Citrus Sinensis ID: 041113
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 983 | 2.2.26 [Sep-21-2011] | |||||||
| Q15KI9 | 1715 | Protein PHYLLO, chloropla | yes | no | 0.990 | 0.567 | 0.604 | 0.0 | |
| B4S4J4 | 578 | 2-succinyl-5-enolpyruvyl- | yes | no | 0.426 | 0.724 | 0.317 | 7e-56 | |
| B3QL00 | 583 | 2-succinyl-5-enolpyruvyl- | yes | no | 0.427 | 0.720 | 0.315 | 4e-53 | |
| Q8KBE8 | 582 | 2-succinyl-5-enolpyruvyl- | yes | no | 0.424 | 0.716 | 0.298 | 7e-53 | |
| Q2S2V6 | 591 | 2-succinyl-5-enolpyruvyl- | yes | no | 0.431 | 0.717 | 0.292 | 4e-52 | |
| Q3B612 | 583 | 2-succinyl-5-enolpyruvyl- | yes | no | 0.423 | 0.713 | 0.292 | 2e-51 | |
| A1BI74 | 587 | 2-succinyl-5-enolpyruvyl- | yes | no | 0.436 | 0.730 | 0.304 | 5e-51 | |
| Q3APX4 | 583 | 2-succinyl-5-enolpyruvyl- | yes | no | 0.418 | 0.704 | 0.307 | 3e-49 | |
| B3EMZ5 | 581 | 2-succinyl-5-enolpyruvyl- | yes | no | 0.435 | 0.736 | 0.305 | 1e-48 | |
| Q1AS21 | 574 | 2-succinyl-5-enolpyruvyl- | yes | no | 0.425 | 0.728 | 0.304 | 3e-48 |
| >sp|Q15KI9|PHYLO_ARATH Protein PHYLLO, chloroplastic OS=Arabidopsis thaliana GN=PHYLLO PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1229 bits (3179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/983 (60%), Positives = 757/983 (77%), Gaps = 9/983 (0%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYI 60
M+LTT+DSA+HWAT S GPVH+NCPFR+PLD SP +W S+CL GLD+W S+ EPFTKY
Sbjct: 503 MVLTTVDSALHWATGSACGPVHLNCPFRDPLDGSPTNWSSNCLNGLDMWMSNAEPFTKYF 562
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
QVQ SH T Q+ E+L++++ KGLLL+GA+H EDEIWA L LA+ + WPVVAD+
Sbjct: 563 QVQ-SHKSDGVTTGQITEILQVIKEAKKGLLLIGAIHTEDEIWASLLLAKELMWPVVADV 621
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSG+RLRKL F+E ++ F+DHLDHAL S+SV++ I+FDV+IQ+GSRITSKR+SQM+
Sbjct: 622 LSGVRLRKLFKPFVEKLTHV-FVDHLDHALFSDSVRNLIEFDVVIQVGSRITSKRVSQML 680
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240
E+CFP YILVD HPCRHDPSH VTHR+QS IVQF + +LK + P R SK L+ALD
Sbjct: 681 EKCFPFAYILVDKHPCRHDPSHLVTHRVQSNIVQFANCVLKSRFPWRRSKLHGHLQALDG 740
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
+A E+SFQI A+ SLTEP+VAH LS+ALTS SALF+GNSM IRD+DMYG + +H V
Sbjct: 741 AIAREMSFQISAESSLTEPYVAHMLSKALTSKSALFIGNSMPIRDVDMYGCSSENSSHVV 800
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
D+ML++E P QWI+V GNRGASGIDGLLS+A GFAVGC K V+CVVGDISFLHDTNGLA
Sbjct: 801 -DMMLSAELPCQWIQVTGNRGASGIDGLLSSATGFAVGCKKRVVCVVGDISFLHDTNGLA 859
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
ILKQR+ RKP+ +LVINN GG IF LLPIA +TEP +L+QYFYT H+ISI+NLCLAHG+
Sbjct: 860 ILKQRIARKPMTILVINNRGGGIFRLLPIAKKTEPSVLNQYFYTAHDISIENLCLAHGVR 919
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNVLSQF 480
+V V TK ELE+AL + D ++EVES I+ANA HS L +FARQ+A+++L ++S
Sbjct: 920 YVHVGTKSELEDALFVPSVEEMDCIVEVESSINANAIVHSTLERFARQAAENSLGIVSAS 979
Query: 481 SVPDTISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVG 540
S + ++ +C++ ++YS YR++LC PT S+F REGFILSL LEDGS+G
Sbjct: 980 SFLHPMIKNVLLCQVSGIQYSQYRVKLCDRPT--ICSDEFSQFHREGFILSLTLEDGSIG 1037
Query: 541 YGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIF 600
YGEVAPL + ENL+D E QL+ +LH M AK SY LPLL GS SSWIWS LGI A IF
Sbjct: 1038 YGEVAPLNSNVENLMDVEGQLQLVLHLMNEAKFSYMLPLLNGSISSWIWSELGITASSIF 1097
Query: 601 PSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVA 660
PSVRCGLEMA+LNA+AV+H SS L IL+ + +E S + S++ICAL+DS +P+EVA
Sbjct: 1098 PSVRCGLEMALLNAMAVRHDSSLLGILH--YQKEENGSAQPHSVQICALLDSEGTPLEVA 1155
Query: 661 SIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
+A LV+EGF+AIKLKV RR ++DA V+QEVR+ VG +IELR DAN WT++EA EF
Sbjct: 1156 YVARKLVQEGFSAIKLKVGRRVSSVQDALVMQEVRRAVGVQIELRADANCRWTFEEAREF 1215
Query: 721 GFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA 780
G L+ C+L+YIEEPVQN++D+I++ EE+GLPVALDET+D F++ PL ML KY HPGIVA
Sbjct: 1216 GLLVNSCNLKYIEEPVQNKDDLIRFHEETGLPVALDETLDDFEECPLRMLTKYTHPGIVA 1275
Query: 781 IVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKV 840
+VIKPSV+GGFENA LIARWAQ+HGKMAV+SAA+ESGLGLSAYI+F+SYLE++N
Sbjct: 1276 VVIKPSVVGGFENAALIARWAQQHGKMAVISAAYESGLGLSAYILFASYLEMENVKASTE 1335
Query: 841 MNRELCPPVAQGLGTYQWLKEDVTTDPISICHNSCRGFVEASVAKATHILQNLQINNDVI 900
+ P VA GLGTY+WL EDV + + I + GFVE +A A+ L++++INNDVI
Sbjct: 1336 QKQGTPPSVAHGLGTYRWLSEDVMMNTLGIFRSPYSGFVEGFIADASRNLKDVKINNDVI 1395
Query: 901 CKTSMEEQVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKA 960
+TS V RY+L V+ F FI+V ++G+ + + ++ LFLHGFLGTGEEWIPIM
Sbjct: 1396 VRTSKGIPVRRYELRVDVDGFSHFIRVHDVGE--NAEGSVALFLHGFLGTGEEWIPIMTG 1453
Query: 961 VSGSARCISIDLPGHGGSKMQNH 983
+SGSARCIS+D+PGHG S++Q+H
Sbjct: 1454 ISGSARCISVDIPGHGRSRVQSH 1476
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Multifunctional enzyme required for phylloquinone (vitamin K1) biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 4EC: .EC: 2EC: .EC: 9EC: 9EC: .EC: 2EC: 0 |
| >sp|B4S4J4|MEND_PROA2 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=menD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (559), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 147/463 (31%), Positives = 226/463 (48%), Gaps = 44/463 (9%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
IL+ +D AV T++P GPVH+N FREPL+ P + S L L W SS P+++ +Q
Sbjct: 148 ILSAIDYAVSTCTANPSGPVHLNIAFREPLEPVPLNENSPWLSSLGKWNSSRAPWSRTLQ 207
Query: 62 VQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADIL 121
Q S S + EV L+ L++ G + + AVL+L++ + + ADI
Sbjct: 208 RQSSPESAS-----VKEVARLLASAENPLIIAGHLDRPADAQAVLNLSKSLNIALYADIS 262
Query: 122 SGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIE 181
S LRL K + L A LS+ + + D+++ G + K+ Q ++
Sbjct: 263 SQLRLHKETVA-------------LQQAWLSDKYVEQHRADLVLHFGGSLVGKKPGQAMK 309
Query: 182 ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMM 241
P I++ NHP R+ P H+VT I++++ F + L K P K + + ++
Sbjct: 310 TWRPDHTIVIKNHPDRYAPDHTVTMSIEASVKAFAEALAKTSQPQ--GKKANPIDEIEQ- 366
Query: 242 VASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVA 301
EI D +TE A +SR + LF+ NSM +RD+DMY T T+
Sbjct: 367 ---EIERFTRPDSPVTEISAARIVSRLIDPGHGLFLANSMPVRDMDMYA---TRSGGTI- 419
Query: 302 DIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAI 361
I A NRGASGIDG++S+A GFA G + V ++GDISFLHD N L +
Sbjct: 420 ------------IPTAMNRGASGIDGIISSAAGFASGLERPVTLLIGDISFLHDMNALCL 467
Query: 362 LKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNH 421
L R P+ ++VINN+GG IFS LPI+D +P + ++ F T +I A + +
Sbjct: 468 L--RSMTVPLTIVVINNNGGGIFSFLPISD--QPDVFEKNFGTPQEFNIAAAATAFSIEY 523
Query: 422 VQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRK 464
+ E+ ++ +IE+ S D N H L +
Sbjct: 524 QCPPSNAAFSESYMAARSSAETSIIEIRSRRDENLALHRKLNQ 566
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Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Prosthecochloris aestuarii (strain DSM 271 / SK 413) (taxid: 290512) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 9 |
| >sp|B3QL00|MEND_CHLP8 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Chlorobaculum parvum (strain NCIB 8327) GN=menD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 210 bits (535), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 146/463 (31%), Positives = 224/463 (48%), Gaps = 43/463 (9%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+L+T+ AV + SP GPVH+N PFREPL+ ++ L W +S +P+ ++ Q
Sbjct: 148 LLSTVGQAVKRSLGSPAGPVHLNLPFREPLEPESHDLAHPWVEPLRNWLASEQPWCRFEQ 207
Query: 62 VQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADIL 121
+ + + T Q +++ + L + G++ D+ AV LA + + AD+
Sbjct: 208 PRTAPDANALTALQ-----QILANAERPLFVAGSMDKADDAEAVASLADSLGILLFADLT 262
Query: 122 SGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIE 181
SGLRL + QN E+ + DV+I G + K+ + +
Sbjct: 263 SGLRLTNKCTPWQLAFQN-------------ETFATSFKPDVVIHFGGALIGKQPAMTLR 309
Query: 182 ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMM 241
+ P Y++V NHP R +P H+VT I+++ V L + + P + AL
Sbjct: 310 KEPPFHYVVVRNHPGRFNPDHNVTLSIEASPAAVVSALSECRKPAEMGGFA----ALFSE 365
Query: 242 VASEISFQICA-DYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
VA I CA D + E +S ALFV NSM RD+D+Y
Sbjct: 366 VAHTIDTAACAPDEPVNEISAPRIVSSLTDGKHALFVANSMPARDMDLY----------A 415
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
A + SE P +RV NRG SGIDG++STA GF+ G +K ++GDISFLHD N L+
Sbjct: 416 APV---SEKP---LRVELNRGVSGIDGIISTAAGFSAGLDKPTTLLIGDISFLHDLNALS 469
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
+L P++++V+NN+GG IFS LPIA +T+ LD+ F T N SI++ L+
Sbjct: 470 LLDN--PTNPLIVIVLNNNGGGIFSFLPIASQTD--RLDECFATPQNFSIESAARTFDLD 525
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLR 463
+ + E E + + VIE+ S AN H L+
Sbjct: 526 YASPASNREFTELYADALKRNKSLVIEIRSNRQANLLLHRTLK 568
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Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Chlorobaculum parvum (strain NCIB 8327) (taxid: 517417) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q8KBE8|MEND_CHLTE 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=menD PE=3 SV=2 | Back alignment and function description |
|---|
Score = 209 bits (533), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 139/466 (29%), Positives = 226/466 (48%), Gaps = 49/466 (10%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDN---SPKH-WMSSCLKGLDIWTSSIEPFT 57
+L+T+D AV + S P GPVH+N PFREPL+ P H W + L+ W +S EP++
Sbjct: 148 LLSTVDHAVRKSLSLPAGPVHLNLPFREPLEPEAPDPGHPWAAP----LETWQASGEPWS 203
Query: 58 KYIQVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVV 117
++ + H + +S + + EL+ + L + G++ N + AV LA + P+
Sbjct: 204 RFARPLHEPSAES-----IVTLRELLAQAERPLFVAGSMSNAADGEAVAALAESLGVPLF 258
Query: 118 ADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRIS 177
AD+ SG+RL + QN F++ Q DV+I G + K+ +
Sbjct: 259 ADLTSGIRLSSDCTPWQLAFQNEAFVERF-------------QPDVVIHFGGHVIGKQPA 305
Query: 178 QMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRA 237
+ + P Y++V HP R DP H+VT ++++ L + P + A
Sbjct: 306 MALRKQPPLHYVVVREHPGRFDPDHNVTLTLEASPAAVASALEGCREPVPGIRCRDAFSA 365
Query: 238 LDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCT 297
++ A ++ P + L+ ALFV NSM RD+D+Y
Sbjct: 366 ASGIIDKMACVPELAVSEISAPRIVSSLA---GDGHALFVANSMPARDMDLYA------- 415
Query: 298 HTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTN 357
+ + ++VA NRG SGIDG++STA GF+ G K ++GDISFLHD N
Sbjct: 416 ---------APVAQKPLQVALNRGVSGIDGIISTAAGFSAGLGKPTTLLIGDISFLHDLN 466
Query: 358 GLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAH 417
L +L P++++V+NNHGG+IFS LPIA +T+ LD+ F T N SI++
Sbjct: 467 ALCLLNHPW--NPLIVIVLNNHGGSIFSFLPIASQTD--RLDECFATPQNFSIESAARTF 522
Query: 418 GLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLR 463
G+++ +T + + + + +IE+ S + N H L+
Sbjct: 523 GIDYACPETNGDFTQLYAEALTTKKSLIIEIRSDREKNLLLHRSLK 568
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Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) (taxid: 194439) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q2S2V6|MEND_SALRD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Salinibacter ruber (strain DSM 13855 / M31) GN=menD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (526), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 135/462 (29%), Positives = 214/462 (46%), Gaps = 38/462 (8%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+LTT D A+H +P GPVH+NC FR+PL+ + +D W EP+T Y
Sbjct: 156 VLTTADQALHQTLRAPAGPVHVNCMFRKPLEPVETEASVAVPTAVDAWARGTEPYTHYPT 215
Query: 62 VQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADIL 121
S ++ + E V+G GL++ G + + A LA H+ WP++ D+
Sbjct: 216 P-----APSPPGPEVDALAETVRGTEHGLVVAGRLDSAAAADATRRLATHLGWPLIPDLT 270
Query: 122 SGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIE 181
S RLR+ E + + + D + L S + ++ ++Q+G R SKR+ +
Sbjct: 271 S--RLRR---GGREQPEQVPYGDLV---LTSAAFREGHPPRAVLQVGGRFASKRLRLFLR 322
Query: 182 ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLL-KVQVPHRSSKWCSFLRALDM 240
+ P + +V P R DP H VTH +++ + VD L+ +++ R + W
Sbjct: 323 DSAPEVWAVVRPDPSRIDPDHRVTHHVEAAVPAAVDALVARLEEGPRGTTWRDDWAGASE 382
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
V + + + +LT+P VA L+ + S AL +SM +RDL+ + T
Sbjct: 383 RVGAVVQAHVQESDALTDPLVAALLTEEMPSEHALVAASSMPVRDLNRHAAPGGTGGPAF 442
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
A NRGASGIDG ++TA G A G + V ++GD++ HD NGLA
Sbjct: 443 A-----------------NRGASGIDGTVATAAGIAEGRDGPVTLLIGDLALQHDLNGLA 485
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
+L+ R P++ +V+NN GG IF LPI E D YF T H ++ L
Sbjct: 486 LLQDR----PVVAIVVNNDGGGIFHFLPIRKHDE---FDPYFTTPHGHDFEHAAALFDLP 538
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSML 462
+ + + L A + + G +IEV + N H L
Sbjct: 539 YHRPDSPSALRSAYAQACRSGESALIEVRTDRATNRQVHDRL 580
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Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Salinibacter ruber (strain DSM 13855 / M31) (taxid: 309807) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q3B612|MEND_PELLD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Pelodictyon luteolum (strain DSM 273) GN=menD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 137/468 (29%), Positives = 227/468 (48%), Gaps = 52/468 (11%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+L+T++ AV + +P GPVH+N PFREP D P L+ L W P T Q
Sbjct: 148 LLSTVEHAVAKSLGAPRGPVHLNQPFREPFDPEPLEGQDPWLEPLQAWKLDGRPRTSSAQ 207
Query: 62 VQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADIL 121
+ ++ MA + EL+ + LL+ G++ + D+ AV LA +R P+ AD+
Sbjct: 208 PERRPDARA-----MATIRELLATARRPLLIAGSIPSPDDARAVASLADDLRIPLYADLS 262
Query: 122 SGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIE 181
SGLRL TE + + A + + + D+++ G R+ ++ S ++
Sbjct: 263 SGLRL---------TEGTLAW----QQAFATPAFLGRFRPDLVVHFGGRLIARHPSAALK 309
Query: 182 ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCS---FLR-- 236
P Y+++ HP R+ P H V+ ++S++ + L+ + + K + FL
Sbjct: 310 AWKPAHYVVIREHPERYAPDHPVSLSLESSLQTAAEGLMGCRSEPSAIKEPAEGFFLHCS 369
Query: 237 -ALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTT 295
ALD + + I L+E A ++S+ +T ALF NSM++R+LD +
Sbjct: 370 GALDDLTEASIP--------LSEISAARQISQLITPGEALFTSNSMSVRELDSF------ 415
Query: 296 CTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHD 355
A + P NRGASGIDG++STA G+ G + V ++GDI+FLHD
Sbjct: 416 -----AAALQPDGLP-----CGLNRGASGIDGIISTAAGYGEGLGRKVTLLIGDIAFLHD 465
Query: 356 TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCL 415
N L++L R +P+ ++++NN+GG IFS LP+A + I +++F T + Q+
Sbjct: 466 LNALSLL--RSLSRPMRIVLLNNNGGGIFSFLPVASCND--IFEEHFATPQHFHAQHAAG 521
Query: 416 AHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLR 463
GL + +T E EE + +IE+ S N H L+
Sbjct: 522 MFGLRYAAPRTNREFEECFLAAGEAPQSTIIEIASSRSENVEQHRTLQ 569
|
Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Pelodictyon luteolum (strain DSM 273) (taxid: 319225) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 9 |
| >sp|A1BI74|MEND_CHLPD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=menD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 203 bits (517), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 147/483 (30%), Positives = 229/483 (47%), Gaps = 54/483 (11%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+L+ +D AV AT +P GPVH+N PFREP + L + W S EP +
Sbjct: 148 VLSAIDHAVEKATGNPPGPVHLNVPFREPFEPELSDLKDPWLAPVAHWIDSAEPLRRC-- 205
Query: 62 VQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADIL 121
SHA + + EL++ + L + G + + ++ AV LA + P+ AD+
Sbjct: 206 ---SHAENVPHPAVIEKTAELIKASRQPLFIAGKLDSREDAIAVGLLAGSLGIPLYADLS 262
Query: 122 SGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIE 181
SGLR + Q+ FL+H + D+++ G ++ S+ I
Sbjct: 263 SGLRYSTHCKPWQLAFQSPAFLEHY-------------RPDMVVHFGGQLISRHPGAAIR 309
Query: 182 ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLK----VQVPHRSSKWCSFLRA 237
P Y++V R+ P H+VT I+++ F D LL+ V +P W +
Sbjct: 310 VSHPGNYLVVKPSANRYAPDHNVTLSIEASPKLFADALLRDLQNVSLP----AWKGPVAD 365
Query: 238 LDMMVASEISFQICAD-YSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTC 296
+ E C D ++E VA +SR + LF+ NSM +RD+D++ T
Sbjct: 366 EFFTFSEEEIEHYCEDDRPVSEISVARIVSRLTGEHDGLFMSNSMPVRDMDLFAAA-TRQ 424
Query: 297 THTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDT 356
T T++ +A NRGASGIDG+LSTA GFA G K V V+GDI+FLHD
Sbjct: 425 TPTIS--------------IAMNRGASGIDGILSTAAGFAEGLQKPVTLVIGDIAFLHDL 470
Query: 357 NGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLA 416
N L++L+ P+ ++V+NN+GG IFS LPIA E + + +F T + SI +
Sbjct: 471 NALSLLES--SSVPLRIIVVNNNGGGIFSFLPIA--AEKDVFETHFATPQHYSIASAAAT 526
Query: 417 HGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNV 476
G+ H KT E + + + VIE+ + N + H L+ HT+N+
Sbjct: 527 FGVAHASPKTNREFADTCTEAFESNESIVIEITGSREDNVSAHRSLQ--------HTINM 578
Query: 477 LSQ 479
L++
Sbjct: 579 LAR 581
|
Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Chlorobium phaeobacteroides (strain DSM 266) (taxid: 290317) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q3APX4|MEND_CHLCH 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Chlorobium chlorochromatii (strain CaD3) GN=menD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (501), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 145/472 (30%), Positives = 222/472 (47%), Gaps = 61/472 (12%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLD------NSPKHWMSSCLKGLDIWTSSIEP 55
+L+T++ AV A ++P G VH+N PFREP + N+ W S+ W +S
Sbjct: 148 LLSTVEYAVAKALNTPAGVVHLNQPFREPFEPESVAANNHAWWQSA-----QQWLAS--- 199
Query: 56 FTKYIQVQHSHACKSYTYCQMAEVLELVQGVNKG---LLLVGAVHNEDEIWAVLHLARHI 112
+ H+ + A + L Q + LL+ G++ +D+ AV LA ++
Sbjct: 200 -----KAAHTTTTVEKKHPNNASITLLRQHLTTAKQPLLIAGSMRCKDDAEAVAALANNL 254
Query: 113 RWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRIT 172
+ P+ AD SGLR++ L L + S + + DV++ G +
Sbjct: 255 KIPLYADFSSGLRMKSNLPP-------------LQLLMQSPAWRAAFHPDVVLHFGGNVV 301
Query: 173 SKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH--RSSK 230
+K ++ + E P Y++V P R P H+VTHR++++I L + R S+
Sbjct: 302 AKHLATALREWQPAHYMVVREEPMRFSPDHNVTHRLEASIAATAHALHNSRSTPLWRESE 361
Query: 231 WCSFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYG 290
F A E+ + AD +TE A +SR + + ALFV NSMA+RD+DMY
Sbjct: 362 ADHFF----AQAAQELEGDVVADQPITEISAARLISRHIGTEQALFVSNSMAVRDMDMYA 417
Query: 291 RNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDI 350
+ I A NRGASGIDG+LSTA GFA G K ++GDI
Sbjct: 418 ----------------ASLHEAGIPTAINRGASGIDGILSTAAGFACGHGKSTTLLIGDI 461
Query: 351 SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISI 410
+FLHD N L++L P+ ++++NN+GG IFS LPIA + + + YF T + SI
Sbjct: 462 AFLHDLNALSLLGSLT--VPLQIVLLNNNGGGIFSFLPIAACDD--LFETYFATPQHYSI 517
Query: 411 QNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSML 462
GL++ T E A +Q +IEV+S N H +L
Sbjct: 518 PLAAETFGLHYANPTTNSEFVAAYHQAQQSPQSTIIEVKSSRTNNLQHHRLL 569
|
Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Chlorobium chlorochromatii (strain CaD3) (taxid: 340177) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 9 |
| >sp|B3EMZ5|MEND_CHLPB 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Chlorobium phaeobacteroides (strain BS1) GN=menD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 145/475 (30%), Positives = 226/475 (47%), Gaps = 47/475 (9%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLD----NSPKHWMSSCLKGLDIWTSSIEPFT 57
+L+T+D AV + SP GPVH+N PFREP D + PK +S L +W + EP
Sbjct: 148 LLSTIDYAVGRSLGSPPGPVHLNIPFREPFDPVNLSGPKPREAS----LTLWKQNNEPLN 203
Query: 58 KYIQVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVV 117
++ + + K + L++ + L++ G + + + A+ LA + P+
Sbjct: 204 RF-----ALSRKIADRAVVDRTKALLKNASSPLIVAGQLDSRTDAEAIGSLAETLDIPLY 258
Query: 118 ADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRIS 177
ADI S LR+ A L LLS+ D+I+ G +I K+++
Sbjct: 259 ADISSQLRMNDTHAP-------------LQPLLLSKRFTASFNPDLILHFGGKIVGKQLA 305
Query: 178 QMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRA 237
I+ P +I+++N R++P H+VT +I++ +F L+ + RS K L+A
Sbjct: 306 ITIKNRAPEHFIVINNSSRRYNPDHNVTLQIEAEPGEFAKLLVPEK--SRSGKHERSLKA 363
Query: 238 LDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCT 297
L + E+ + LTE A LS + + LF+ NSM IRD+D Y
Sbjct: 364 LSDEIEKELDNYCASGKPLTEISTARILSGMIPESHGLFIANSMPIRDMDTY-------- 415
Query: 298 HTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTN 357
A + N P A NRGASGIDG ++TA G A G V ++GDISFLHD N
Sbjct: 416 ---AALRKNGSAP----LCAMNRGASGIDGNIATAAGLAQGLGTPVTLLIGDISFLHDLN 468
Query: 358 GLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAH 417
L +L Q M+ +P+ ++V+NN+GG IFS LP+A TE I + F T N SI+
Sbjct: 469 SLTLL-QGME-QPLHIVVVNNNGGGIFSFLPVA--TEKDIFETNFGTPQNYSIRAAAETF 524
Query: 418 GLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADH 472
G+++ + + + + +IEV + N H + K R D
Sbjct: 525 GISYNSPSSPESFKASYADLSRSAVSGIIEVNGSREENLAEHRRVNKQLRNIIDR 579
|
Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Chlorobium phaeobacteroides (strain BS1) (taxid: 331678) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q1AS21|MEND_RUBXD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=menD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 143/470 (30%), Positives = 217/470 (46%), Gaps = 52/470 (11%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGL-DIWTSSIEPFTKYI 60
+LTT+D AV+ + P GPVH+N FREP P GL D+W P+T+Y
Sbjct: 150 VLTTVDQAVYRSQRPPAGPVHLNLMFREPFLPQPAQ-----PDGLPDLWPGD-GPYTRY- 202
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVN---KGLLLVGAVHNEDEIWAVLHLARHIRWPVV 117
++ AEV EL + +G+++ G + + + A LA + WP++
Sbjct: 203 -------ARAAPVPDEAEVRELASALGAAERGVVVAGRLRSRKQGEAAARLAAALGWPLL 255
Query: 118 ADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRIS 177
DI S RL E + + D L L D ++++G SKR+
Sbjct: 256 PDICSQARLGA------RPEVSAPYHDLL---LAGGRFPGGRAPDAVVRVGGVPVSKRLQ 306
Query: 178 QMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCS-FLR 236
+ + P TY +V +HP R DP H THR+++ + + L + W S +LR
Sbjct: 307 RYVTGRKPATYAVVADHPFRSDPEHLATHRLEADVAELCAALAGRVRRAAAPGWLSGWLR 366
Query: 237 ALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTC 296
A + + L+EP VA +SR + + AL +SM +RDLD +
Sbjct: 367 A-SGEAGRRLEAALRERKGLSEPGVARLVSRLIPEDHALVAASSMPVRDLDTFA------ 419
Query: 297 THTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDT 356
+ E P + VA NRGASGIDG ++TA GFA G + V ++GD++ LHD
Sbjct: 420 ---------DPEGPP--VPVAANRGASGIDGTVATAAGFARGAGRPVTLLIGDLALLHDL 468
Query: 357 NGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLA 416
N LA+L+ P +++V+NN GG IF LP+A+ I + YF T H + +
Sbjct: 469 NSLAMLRG----LPAVVVVLNNDGGGIFHFLPVAEHGG--IFEPYFGTPHGLGFRQAAEM 522
Query: 417 HGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFA 466
GL + +T EL A + G +IEV + N H L + A
Sbjct: 523 FGLGYSGPRTAGELSLAYQRACAEGGPHLIEVVTDRRENLALHRELLRGA 572
|
Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) (taxid: 266117) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 983 | ||||||
| 359473493 | 1614 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.995 | 0.606 | 0.693 | 0.0 | |
| 255546995 | 1679 | menaquinone biosynthesis protein, putati | 0.993 | 0.581 | 0.690 | 0.0 | |
| 449478619 | 1794 | PREDICTED: protein PHYLLO, chloroplastic | 0.994 | 0.545 | 0.617 | 0.0 | |
| 449435274 | 1794 | PREDICTED: protein PHYLLO, chloroplastic | 0.994 | 0.545 | 0.617 | 0.0 | |
| 297838661 | 1716 | 2-oxoglutarate decarboxylase/ hydro-lyas | 0.990 | 0.567 | 0.613 | 0.0 | |
| 71738181 | 1715 | chloroplast Phyllo [Arabidopsis thaliana | 0.990 | 0.567 | 0.604 | 0.0 | |
| 110742201 | 1371 | hypothetical protein [Arabidopsis thalia | 0.990 | 0.710 | 0.604 | 0.0 | |
| 145337303 | 1715 | 2-oxoglutarate decarboxylase/ hydro-lyas | 0.990 | 0.567 | 0.604 | 0.0 | |
| 356555334 | 1614 | PREDICTED: protein PHYLLO, chloroplastic | 0.945 | 0.575 | 0.610 | 0.0 | |
| 242062128 | 1704 | hypothetical protein SORBIDRAFT_04g02416 | 0.991 | 0.572 | 0.512 | 0.0 |
| >gi|359473493|ref|XP_002268761.2| PREDICTED: LOW QUALITY PROTEIN: protein PHYLLO, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1412 bits (3655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 682/983 (69%), Positives = 806/983 (81%), Gaps = 4/983 (0%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYI 60
MILTTLDSAV+WATSSP GPVHINCPFREPL+NSPK WM SCLKGLD W SS EPFTKYI
Sbjct: 394 MILTTLDSAVYWATSSPCGPVHINCPFREPLENSPKEWMLSCLKGLDSWMSSAEPFTKYI 453
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
Q+QHSHA + QMAEV+E++QG +GLLL+GA+ ED+IWA L LA+H+ WPVVADI
Sbjct: 454 QLQHSHAPDD-SQGQMAEVIEVIQGAKRGLLLIGAITTEDDIWAALLLAKHLCWPVVADI 512
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSGLRLRKL SF E E N+LFLDHLDHALLS+ V+ W Q DVIIQIGSRITSKRISQMI
Sbjct: 513 LSGLRLRKLSTSFQEIEDNVLFLDHLDHALLSDFVRVWAQADVIIQIGSRITSKRISQMI 572
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240
E+CFPC+YI+VD HPCRHDPSH +THRIQSTI QF D L K Q P SSKW LRALDM
Sbjct: 573 EDCFPCSYIMVDKHPCRHDPSHLLTHRIQSTITQFADCLCKAQFPLMSSKWSVSLRALDM 632
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
MVA EIS I ++ LTEP+VAH + ALT +SALF+GNSMAIRD DMY RN CTH +
Sbjct: 633 MVAQEISSLIHSESFLTEPYVAHVILEALTCDSALFIGNSMAIRDADMYARNSADCTHRI 692
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
D +L+ P WIRV+GNRGASGIDGLLSTAIGFAVGCNK VLCV+GD+SFL+DTNGL+
Sbjct: 693 GDTVLSLGLPFHWIRVSGNRGASGIDGLLSTAIGFAVGCNKRVLCVIGDVSFLYDTNGLS 752
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
IL QRM+RKP+ +LV+NNHGGAIFSLLPIA+RTE R+LDQYFYT+HN+SI LCLAHG+
Sbjct: 753 ILSQRMRRKPMTILVLNNHGGAIFSLLPIAERTERRVLDQYFYTSHNVSIGKLCLAHGMK 812
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNVLSQF 480
H++V+TK+EL++AL SQ D VIEVESCID+NA FHS LRKFA Q+ADH LN+LS+F
Sbjct: 813 HLEVRTKIELQDALFTSQQENRDCVIEVESCIDSNAAFHSTLRKFACQAADHALNMLSKF 872
Query: 481 SVPDTISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVG 540
S+PD I +CKI MEYS+YRI LCAPPTS+ +++ + F R+GFIL L LE G VG
Sbjct: 873 SIPDFIFHGSFLCKIHGMEYSIYRIPLCAPPTSASVNYKTTTFYRDGFILILSLEGGHVG 932
Query: 541 YGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIF 600
+GEVAPLEIH+E+LLD EEQLRFL H + GAKIS++LPLLKGSFSSWIWS LGIP IF
Sbjct: 933 FGEVAPLEIHEEDLLDVEEQLRFLHHVIKGAKISFYLPLLKGSFSSWIWSCLGIPPSSIF 992
Query: 601 PSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVA 660
PSVRCGLEMAILNAIA + GSS LNIL+P +++EEIS+RS ++ICAL+DSN SP+EVA
Sbjct: 993 PSVRCGLEMAILNAIAAQEGSSLLNILHPY-KVEEEISERSKRVQICALLDSNGSPLEVA 1051
Query: 661 SIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
+A TLVEEGFTAIKLKVARRADPI+DA VIQE+RK VG +IELR DANRNWTY++A++F
Sbjct: 1052 YLAKTLVEEGFTAIKLKVARRADPIEDATVIQEIRKMVGLQIELRADANRNWTYEQAIQF 1111
Query: 721 GFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA 780
+K+CDL+YIEEPV++E+DIIK+CEE+GLPVALDET+DK + PL L K++H GIVA
Sbjct: 1112 SSYVKNCDLKYIEEPVKDEDDIIKFCEETGLPVALDETMDKIGETPLQKLAKFSHSGIVA 1171
Query: 781 IVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKV 840
+VIKPSV+GGFENA LIARWAQ+ GKMAVVSAAFESGL LSAYI SSY ELQ+A +CK+
Sbjct: 1172 VVIKPSVVGGFENAALIARWAQQQGKMAVVSAAFESGLSLSAYIQLSSYFELQSAEICKL 1231
Query: 841 MNRELCPPVAQGLGTYQWLKEDVTTDPISICHNSCRGFVEASVAKATHILQNLQINNDVI 900
MN++L P VA GLGTY+WLKEDVT +P+SI + GF+EASV A ILQ QIN D I
Sbjct: 1232 MNKQLVPSVAHGLGTYRWLKEDVTFEPLSINRSQDSGFIEASVVDADRILQKFQINRDTI 1291
Query: 901 CKTSMEEQVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKA 960
+ EEQV +QL V+S F + V EIG I++++++FLHGFLGTG +WI MKA
Sbjct: 1292 IRIFSEEQVYTHQLAVDSDGFSCLLNVHEIGA--SIENDVVVFLHGFLGTGGDWIATMKA 1349
Query: 961 VSGSARCISIDLPGHGGSKMQNH 983
+SGSARCISIDLPGHGGSK+QNH
Sbjct: 1350 ISGSARCISIDLPGHGGSKIQNH 1372
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546995|ref|XP_002514555.1| menaquinone biosynthesis protein, putative [Ricinus communis] gi|223546159|gb|EEF47661.1| menaquinone biosynthesis protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1387 bits (3590), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 678/982 (69%), Positives = 798/982 (81%), Gaps = 5/982 (0%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYI 60
M+LTTLDSAVHWATSSPYGPVHINCPFREPLD+SP WM SCLKGLDIW SS EPFTKYI
Sbjct: 465 MVLTTLDSAVHWATSSPYGPVHINCPFREPLDDSPDKWMFSCLKGLDIWMSSAEPFTKYI 524
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
++ S C + ++LE+VQ +GLLL+ A+H ED+IWA L LA+H+ WPVVADI
Sbjct: 525 EMPSSLPCDGDNRIALIQILEIVQRAKRGLLLIAAMHTEDDIWAALILAKHLNWPVVADI 584
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSGLRLRKLL+ F E+NILF+DHLDHALLS V+ W+Q DV+IQIGSRITSKRI QM+
Sbjct: 585 LSGLRLRKLLSYFPGVEENILFVDHLDHALLSNFVRGWMQLDVVIQIGSRITSKRIFQML 644
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240
EE +P +YILVDNHPCRHDPSH VTHR+ +I+QFVD L+K ++ +RSS+WC FL ALD
Sbjct: 645 EEHYPFSYILVDNHPCRHDPSHFVTHRVDCSILQFVDSLMKAKLLNRSSEWCGFLSALDR 704
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
MVA IS+QI A+ LTEPHV +S AL+S SALF+GNSMAIRD DMYG ++ + +
Sbjct: 705 MVAWNISYQIYAENLLTEPHVLRAISEALSSESALFIGNSMAIRDADMYGCSYENHSCRI 764
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
AD++LNSE I+VAGNRGASGIDGLLSTAIGFAVGCNK VL ++GD+SFLHDTNGL+
Sbjct: 765 ADMVLNSELQCLGIQVAGNRGASGIDGLLSTAIGFAVGCNKRVLSLIGDVSFLHDTNGLS 824
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
IL R+ RKP+ +LVINNHGGAIFSLLPIA+R + RIL QYFYT+HNISIQ LC+AH +
Sbjct: 825 ILSTRLPRKPMTVLVINNHGGAIFSLLPIANRIDQRILKQYFYTSHNISIQQLCMAHSVR 884
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNVLSQF 480
H+ VKTK ELE+AL SQ TDRVIEVES I AN+ FHS LRK A Q+A+H VLS
Sbjct: 885 HLLVKTKKELEDALLTSQREQTDRVIEVESSISANSAFHSTLRKSACQAANHAFTVLSSL 944
Query: 481 SVPDTISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVG 540
SVP +IS +CKI +MEYSLYRIQLCAPPTS+ +D + + F REG+ILSL LEDGSVG
Sbjct: 945 SVPFSISDGFFLCKILKMEYSLYRIQLCAPPTSAPVDLDTNEFHREGYILSLSLEDGSVG 1004
Query: 541 YGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIF 600
GEVAP+EIHKE++LD EEQLRFLLH + G KIS+ LPLLK SFSSWIW+ LGIP IF
Sbjct: 1005 CGEVAPIEIHKEDMLDVEEQLRFLLHVIKGTKISFSLPLLKESFSSWIWNNLGIPENSIF 1064
Query: 601 PSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVA 660
PSVR GLEMAILNAIA + GSS LNI+ P +E K +++KIC LIDSN SP EVA
Sbjct: 1065 PSVRLGLEMAILNAIAERQGSSLLNIIQPQRGKEEAYEK--SNVKICGLIDSNGSPAEVA 1122
Query: 661 SIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
IA++LV+EGF+A+KLKVARR DPI+DA VIQEVRKKVG +IELRVDANRNW+Y+EA++F
Sbjct: 1123 YIASSLVKEGFSALKLKVARRLDPIQDAAVIQEVRKKVGRQIELRVDANRNWSYEEAIQF 1182
Query: 721 GFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA 780
G L+KDC+LQYIEEPVQ+E+DIIKYCEESGLPVALDETIDKF ++PL+ML KYAHPGIVA
Sbjct: 1183 GSLVKDCNLQYIEEPVQDEDDIIKYCEESGLPVALDETIDKFCENPLHMLVKYAHPGIVA 1242
Query: 781 IVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKV 840
+VIKPSV+GGFE A LIA WA + GKMAVVSAAFESGLGLS YI FSSYLE+QNA LC+V
Sbjct: 1243 VVIKPSVVGGFERAALIAEWAHQLGKMAVVSAAFESGLGLSTYIQFSSYLEVQNADLCRV 1302
Query: 841 MNRELCPPVAQGLGTYQWLKEDVTTDPISICHNSCRGFVEASVAKATHILQNLQINNDVI 900
M+R+L PPVA GLGTYQWLK+DVTT P+ I H C GF+ ASV+ A +Q QIN VI
Sbjct: 1303 MDRKLGPPVAHGLGTYQWLKQDVTTKPLRIRHLPC-GFIGASVSDAIEFVQKFQINQKVI 1361
Query: 901 CKTSMEEQVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKA 960
C+T EQV Y +VNSK F IKVQE+GQ+ D DN++LFLHGFLGTGE+W+PIMKA
Sbjct: 1362 CRTFTGEQVSTYDFSVNSKGFACSIKVQEVGQKND--DNVVLFLHGFLGTGEDWVPIMKA 1419
Query: 961 VSGSARCISIDLPGHGGSKMQN 982
+SGSARCISIDLPGHGGSK+ N
Sbjct: 1420 ISGSARCISIDLPGHGGSKISN 1441
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449478619|ref|XP_004155371.1| PREDICTED: protein PHYLLO, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1264 bits (3271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/986 (61%), Positives = 767/986 (77%), Gaps = 8/986 (0%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYI 60
M+LTTLDSAVHWATSSP GPVHINCPFREPL+NSP W SCL GL IW+SS E FTKYI
Sbjct: 564 MVLTTLDSAVHWATSSPCGPVHINCPFREPLENSPSPWNLSCLNGLHIWSSSTEVFTKYI 623
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
+++ S + T+ MAEVL+++ G G+LL+G++ +EDEIWA LA+HI WP+VAD+
Sbjct: 624 RLEAS-PTSTDTFGHMAEVLKVIHGARNGVLLLGSIQSEDEIWAAFLLAKHISWPIVADV 682
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSGLRLRK L+ FLE + N F+DHLDHALLS+SV+ W++FDVIIQIGSR+TSKR+S+++
Sbjct: 683 LSGLRLRKSLSPFLEMKNNFFFIDHLDHALLSDSVRKWLKFDVIIQIGSRVTSKRVSKLL 742
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240
E+C PC+YI+VD HP RHDPSH VTHRIQST+++FV LLK P SK + LRAL+M
Sbjct: 743 EDCSPCSYIMVDKHPDRHDPSHIVTHRIQSTVLEFVGCLLKASFPLNKSKLTATLRALNM 802
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
MV EI FQI A YSL+EP VA +S AL+ +S LF+GNSM IRD+DMY W+ C +
Sbjct: 803 MVEWEIQFQISAHYSLSEPEVAQVISEALSFDSVLFLGNSMPIRDVDMYAYGWSKCNDSG 862
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
A I LN + P W +GNRGASGIDGLLS+A+GF+VGCNK VLCV+GD+SFLHDTNGLA
Sbjct: 863 AAIPLNLQMPFYWTWTSGNRGASGIDGLLSSAVGFSVGCNKRVLCVLGDVSFLHDTNGLA 922
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
IL +RMKRKP+ ++VINN+GGAIFSLLPI D+ + ILDQ+F+T+H +S++NLC+AHGL
Sbjct: 923 ILNKRMKRKPVTVVVINNNGGAIFSLLPIKDKVDAAILDQFFHTSHQVSLRNLCVAHGLK 982
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNVLSQF 480
H+ V+TK EL++AL MS H D +IEVES IDAN TFHS+LRKF Q+ DH L + S+
Sbjct: 983 HLHVRTKKELQDALFMSHHEENDCIIEVESSIDANTTFHSVLRKFTCQAVDHGLRIFSRL 1042
Query: 481 SVPDTISCSLSICKICRMEYSLYRIQLCAPPT--SSYIDHNRSRFCREGFILSLYLEDGS 538
+++S L +CKI RME +L+RI LCAPPT SS D R F REGFILSL+LEDGS
Sbjct: 1043 YSEESVSPGLFLCKISRMECTLFRIPLCAPPTTSSSSFDQVRREFFREGFILSLFLEDGS 1102
Query: 539 VGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACE 598
+G GEV+PL+IH+ENLLD EEQL L+ + GAKIS +PLL+GSFSSW++ LGIP
Sbjct: 1103 LGLGEVSPLDIHRENLLDVEEQLNCLIPILKGAKISSSIPLLRGSFSSWVFHELGIPPSS 1162
Query: 599 IFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTS-IKICALIDSNKSPV 657
I+PSVRCGLEMA+L+AIA + G L++L ++DEE + ++ S ++IC L+DS +P
Sbjct: 1163 IYPSVRCGLEMAVLHAIAGRKGCGLLDVLQ--HQLDEEKNLKTLSKVQICGLLDSGGTPS 1220
Query: 658 EVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEA 717
EVA +A TLVEEGF AIKLK R+ + + DA V+QEVRKK+G++IELRVDANRNW+Y+EA
Sbjct: 1221 EVALVAKTLVEEGFPAIKLKETRQRNVMYDAAVVQEVRKKLGNQIELRVDANRNWSYEEA 1280
Query: 718 LEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG 777
L F L+KDC LQYIEEPV +E+ IIK+CEESGLPVALDETID+ Q +P+ L KYAHPG
Sbjct: 1281 LLFSSLVKDCGLQYIEEPVMDEDAIIKFCEESGLPVALDETIDRIQDNPVKELAKYAHPG 1340
Query: 778 IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYL 837
IVAIVIKPSV+GGFENA LIARWAQ+HGKMAVVSAAFESG+GLS Y+ S YLELQNA +
Sbjct: 1341 IVAIVIKPSVVGGFENAALIARWAQQHGKMAVVSAAFESGVGLSGYVHLSCYLELQNAEV 1400
Query: 838 CKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICHNSCRGFVEASVAKATHILQNLQINN 897
K+MN + P +A GLGTY+WL+EDVT +P+ + G +EASVA+A +L+N QIN
Sbjct: 1401 RKLMNIQPAPSIAHGLGTYRWLEEDVTVNPLRFRRDPHSGIIEASVAEANQLLENFQINQ 1460
Query: 898 DVICKTSMEEQVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPI 957
++C+ + QV Y+L+V+SK F IKV E+GQR + DN+L FLHG LGTGE+W+ I
Sbjct: 1461 KIVCRKFTDRQVRSYRLSVDSKGFSYSIKVLEVGQRTN--DNVLFFLHGCLGTGEDWLTI 1518
Query: 958 MKAVSGSARCISIDLPGHGGSKMQNH 983
MK VSGSARCIS+DLPGHG S + +
Sbjct: 1519 MKGVSGSARCISLDLPGHGESTTEKN 1544
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435274|ref|XP_004135420.1| PREDICTED: protein PHYLLO, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1264 bits (3270), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/986 (61%), Positives = 767/986 (77%), Gaps = 8/986 (0%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYI 60
M+LTTLDSAVHWATSSP GPVHINCPFREPL+NSP W SCL GL IW+SS E FTKYI
Sbjct: 564 MVLTTLDSAVHWATSSPCGPVHINCPFREPLENSPSPWNLSCLNGLHIWSSSTEVFTKYI 623
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
+++ S + T+ MAEVL+++ G G+LL+G++ +EDEIWA LA+HI WP+VAD+
Sbjct: 624 RLEAS-PTSTDTFGHMAEVLKVIHGARNGVLLLGSIQSEDEIWAAFLLAKHISWPIVADV 682
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSGLRLRK L+ FLE + N F+DHLDHALLS+SV+ W++FDVIIQIGSR+TSKR+S+++
Sbjct: 683 LSGLRLRKSLSPFLEMKNNFFFIDHLDHALLSDSVRKWLKFDVIIQIGSRVTSKRVSKLL 742
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240
E+C PC+YI+VD HP RHDPSH VTHRIQST+++FV LLK P SK + LRAL+M
Sbjct: 743 EDCSPCSYIMVDKHPDRHDPSHIVTHRIQSTVLEFVGCLLKASFPLNKSKLTATLRALNM 802
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
MV EI FQI A YSL+EP VA +S AL+ +S LF+GNSM IRD+DMY W+ C +
Sbjct: 803 MVEWEIQFQISAHYSLSEPEVAQVISEALSFDSVLFLGNSMPIRDVDMYAYGWSKCNDSG 862
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
A I LN + P W +GNRGASGIDGLLS+A+GF+VGCNK VLCV+GD+SFLHDTNGLA
Sbjct: 863 AAIPLNLQMPFYWTWTSGNRGASGIDGLLSSAVGFSVGCNKRVLCVLGDVSFLHDTNGLA 922
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
IL +RMKRKP+ ++VINN+GGAIFSLLPI D+ + ILDQ+F+T+H +S++NLC+AHGL
Sbjct: 923 ILNKRMKRKPVTVVVINNNGGAIFSLLPIKDKVDAAILDQFFHTSHQVSLRNLCVAHGLK 982
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNVLSQF 480
H+ V+TK EL++AL MS H D +IEVES IDAN TFHS+LRKF Q+ DH L + S+
Sbjct: 983 HLHVRTKKELQDALFMSHHEENDCIIEVESSIDANTTFHSVLRKFTCQAVDHGLRIFSRL 1042
Query: 481 SVPDTISCSLSICKICRMEYSLYRIQLCAPPT--SSYIDHNRSRFCREGFILSLYLEDGS 538
+++S L +CKI RME +L+RI LCAPPT SS D R F REGFILSL+LEDGS
Sbjct: 1043 YSEESVSPGLFLCKISRMECTLFRIPLCAPPTTSSSSFDQVRREFFREGFILSLFLEDGS 1102
Query: 539 VGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACE 598
+G GEV+PL+IH+ENLLD EEQL L+ + GAKIS +PLL+GSFSSW++ LGIP
Sbjct: 1103 LGLGEVSPLDIHRENLLDVEEQLNCLIPILKGAKISSSIPLLRGSFSSWVFHELGIPPSS 1162
Query: 599 IFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTS-IKICALIDSNKSPV 657
I+PSVRCGLEMA+L+AIA + G L++L ++DEE + ++ S ++IC L+DS +P
Sbjct: 1163 IYPSVRCGLEMAVLHAIAGRKGCGLLDVLQ--HQLDEEKNLKTLSKVQICGLLDSGGTPS 1220
Query: 658 EVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEA 717
EVA +A TLVEEGF AIKLK R+ + + DA V+QEVRKK+G++IELRVDANRNW+Y+EA
Sbjct: 1221 EVALVAKTLVEEGFPAIKLKETRQRNVMYDAAVVQEVRKKLGNQIELRVDANRNWSYEEA 1280
Query: 718 LEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG 777
L F L+KDC LQYIEEPV +E+ IIK+CEESGLPVALDETID+ Q +P+ L KYAHPG
Sbjct: 1281 LLFSSLVKDCGLQYIEEPVMDEDAIIKFCEESGLPVALDETIDRIQDNPVKELAKYAHPG 1340
Query: 778 IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYL 837
IVAIVIKPSV+GGFENA LIARWAQ+HGKMAVVSAAFESG+GLS Y+ S YLELQNA +
Sbjct: 1341 IVAIVIKPSVVGGFENAALIARWAQQHGKMAVVSAAFESGVGLSGYVHLSCYLELQNAEV 1400
Query: 838 CKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICHNSCRGFVEASVAKATHILQNLQINN 897
K+MN + P +A GLGTY+WL+EDVT +P+ + G +EASVA+A +L+N QIN
Sbjct: 1401 RKLMNIQPAPSIAHGLGTYRWLEEDVTVNPLRFRRDPHSGIIEASVAEANQLLENFQINQ 1460
Query: 898 DVICKTSMEEQVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPI 957
++C+ + QV Y+L+V+SK F IKV E+GQR + DN+L FLHG LGTGE+W+ I
Sbjct: 1461 KIVCRKFTDRQVRSYRLSVDSKGFSYSIKVLEVGQRTN--DNVLFFLHGCLGTGEDWLTI 1518
Query: 958 MKAVSGSARCISIDLPGHGGSKMQNH 983
MK VSGSARCIS+DLPGHG S + +
Sbjct: 1519 MKGVSGSARCISLDLPGHGESTTEKN 1544
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297838661|ref|XP_002887212.1| 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding protein [Arabidopsis lyrata subsp. lyrata] gi|297333053|gb|EFH63471.1| 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1246 bits (3225), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/983 (61%), Positives = 763/983 (77%), Gaps = 9/983 (0%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYI 60
M+LTT+DSA+HWAT S GPVH+NCPFR+PLD SP +W S+CLKGLD+W S+ EPFTKY
Sbjct: 505 MVLTTVDSALHWATGSACGPVHLNCPFRDPLDGSPTNWSSNCLKGLDMWMSNAEPFTKYF 564
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
QVQ SH T Q+ EVL++++ KGLLL+GA+H EDEIWA L LA+ + WPVVAD+
Sbjct: 565 QVQ-SHKSNGVTTGQITEVLQVIKEAKKGLLLIGAIHTEDEIWASLLLAKDLMWPVVADV 623
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSG+RLRKL FLE + +F+DHLDHALLS+SV++ I+FDV+IQ+GSRITSKR+SQ++
Sbjct: 624 LSGVRLRKLFKPFLE-KLTPVFVDHLDHALLSDSVRNLIEFDVVIQVGSRITSKRVSQVL 682
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240
E+CFP YILVD HPCRHDPSH VTHR+QS IVQF D +L Q P R SK L+ALD
Sbjct: 683 EKCFPFAYILVDKHPCRHDPSHLVTHRVQSNIVQFADCVLNSQFPRRRSKLHGHLQALDG 742
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
+A E+SFQI A+ SLTEP++AH LS+ALTS SALF+GNSM IRD+DMYG + +H V
Sbjct: 743 AIAREMSFQISAESSLTEPYIAHMLSKALTSESALFIGNSMPIRDVDMYGCSSENSSHVV 802
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
D+ML++E P QWI+V GNRGASGIDGLLS+A GFAVGC K V+CVVGDISFLHDTNGLA
Sbjct: 803 -DMMLSAELPCQWIQVTGNRGASGIDGLLSSATGFAVGCKKRVVCVVGDISFLHDTNGLA 861
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
ILKQR+ RKP+ +LVINN GG IF LLPIA RTEP +L+QYFYT+H+ISI+NLCLAHG+
Sbjct: 862 ILKQRIARKPMTILVINNRGGGIFRLLPIAKRTEPSVLNQYFYTSHDISIENLCLAHGVR 921
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNVLSQF 480
+V V TK EL++AL + D ++EVES I+ANA HS L +FARQ+A+++L ++S
Sbjct: 922 YVHVGTKSELDDALFVPSVEEMDSIVEVESSINANAIVHSTLERFARQAAENSLGIISTS 981
Query: 481 SVPDTISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVG 540
S+ + ++ +C++ ++YS YR++LC PT S+F REGFILSL LEDGS+G
Sbjct: 982 SLLHPMIGNVLLCQVSGIQYSKYRVKLCDRPT--ICSDEFSQFHREGFILSLTLEDGSIG 1039
Query: 541 YGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIF 600
YGEVAPL+ + ENL+D E QL+ +LH M GAK SY LPLL GS SSWIWS LGI A IF
Sbjct: 1040 YGEVAPLDSNVENLMDVEGQLQLVLHLMNGAKFSYMLPLLNGSISSWIWSELGITASSIF 1099
Query: 601 PSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVA 660
PSVRCGLEMA+LNA+AV+H SS L IL+ + DE S + S +ICAL+DS + +EVA
Sbjct: 1100 PSVRCGLEMALLNAMAVRHDSSLLGILH--YQKDENGSAQPHSAQICALLDSEGTALEVA 1157
Query: 661 SIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
+A LVEEGF+AIKLKV RR + ++DA V+QEVR+ VG +IELR DAN WT++EA EF
Sbjct: 1158 YVARKLVEEGFSAIKLKVGRRVNSVQDALVMQEVRRAVGDQIELRADANCRWTFEEATEF 1217
Query: 721 GFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA 780
G L+K C+L+YIEEPVQN++D+I++ EE+GLPVALDET+D F++ PL ML KY HPGIVA
Sbjct: 1218 GLLVKSCNLKYIEEPVQNKDDLIRFHEETGLPVALDETLDDFEECPLRMLTKYTHPGIVA 1277
Query: 781 IVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKV 840
+VIKPSV+GGFENA LIARWAQ+HGKMAV+SAA+ESGLGLSAYI+F+SYLE+ N
Sbjct: 1278 VVIKPSVVGGFENAALIARWAQKHGKMAVISAAYESGLGLSAYILFASYLEMVNVKASTE 1337
Query: 841 MNRELCPPVAQGLGTYQWLKEDVTTDPISICHNSCRGFVEASVAKATHILQNLQINNDVI 900
+ P VA GLGTY+WL EDV + + I + GFVE VA A+ L++++INN+VI
Sbjct: 1338 QKQGTSPSVAHGLGTYRWLSEDVMMNTLGIFRSPYSGFVEGFVADASINLKDVKINNNVI 1397
Query: 901 CKTSMEEQVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKA 960
+TS E V RY+L V+ F FI+V ++GQ + + ++ LFLHGFLGTGEEWIPIMK
Sbjct: 1398 VRTSKEIPVQRYELRVDVDGFSHFIRVHDVGQ--NAEGSVALFLHGFLGTGEEWIPIMKG 1455
Query: 961 VSGSARCISIDLPGHGGSKMQNH 983
+SGSARCIS+D+PGHG S++Q+H
Sbjct: 1456 ISGSARCISVDIPGHGRSRVQSH 1478
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|71738181|gb|AAZ40195.1| chloroplast Phyllo [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1229 bits (3180), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/983 (60%), Positives = 757/983 (77%), Gaps = 9/983 (0%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYI 60
M+LTT+DSA+HWAT S GPVH+NCPFR+PLD SP +W S+CL GLD+W S+ EPFTKY
Sbjct: 503 MVLTTVDSALHWATGSACGPVHLNCPFRDPLDGSPTNWSSNCLNGLDMWMSNAEPFTKYF 562
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
QVQ SH T Q+ E+L++++ KGLLL+GA+H EDEIWA L LA+ + WPVVAD+
Sbjct: 563 QVQ-SHKSDGVTTGQITEILQVIKEAKKGLLLIGAIHTEDEIWASLLLAKELMWPVVADV 621
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSG+RLRKL F+E ++ F+DHLDHAL S+SV++ I+FDV+IQ+GSRITSKR+SQM+
Sbjct: 622 LSGVRLRKLFKPFVEKLTHV-FVDHLDHALFSDSVRNLIEFDVVIQVGSRITSKRVSQML 680
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240
E+CFP YILVD HPCRHDPSH VTHR+QS IVQF + +LK + P R SK L+ALD
Sbjct: 681 EKCFPFAYILVDKHPCRHDPSHLVTHRVQSNIVQFANCVLKSRFPWRRSKLHGHLQALDG 740
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
+A E+SFQI A+ SLTEP+VAH LS+ALTS SALF+GNSM IRD+DMYG + +H V
Sbjct: 741 AIAREMSFQISAESSLTEPYVAHMLSKALTSKSALFIGNSMPIRDVDMYGCSSENSSHVV 800
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
D+ML++E P QWI+V GNRGASGIDGLLS+A GFAVGC K V+CVVGDISFLHDTNGLA
Sbjct: 801 -DMMLSAELPCQWIQVTGNRGASGIDGLLSSATGFAVGCKKRVVCVVGDISFLHDTNGLA 859
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
ILKQR+ RKP+ +LVINN GG IF LLPIA +TEP +L+QYFYT H+ISI+NLCLAHG+
Sbjct: 860 ILKQRIARKPMTILVINNRGGGIFRLLPIAKKTEPSVLNQYFYTAHDISIENLCLAHGVR 919
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNVLSQF 480
+V V TK ELE+AL + D ++EVES I+ANA HS L +FARQ+A+++L ++S
Sbjct: 920 YVHVGTKSELEDALFVPSVEEMDCIVEVESSINANAIVHSTLERFARQAAENSLGIVSAS 979
Query: 481 SVPDTISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVG 540
S + ++ +C++ ++YS YR++LC PT S+F REGFILSL LEDGS+G
Sbjct: 980 SFLHPMIKNVLLCQVSGIQYSQYRVKLCDRPT--ICSDEFSQFHREGFILSLTLEDGSIG 1037
Query: 541 YGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIF 600
YGEVAPL + ENL+D E QL+ +LH M AK SY LPLL GS SSWIWS LGI A IF
Sbjct: 1038 YGEVAPLNSNVENLMDVEGQLQLVLHLMNEAKFSYMLPLLNGSISSWIWSELGITASSIF 1097
Query: 601 PSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVA 660
PSVRCGLEMA+LNA+AV+H SS L IL+ + +E S + S++ICAL+DS +P+EVA
Sbjct: 1098 PSVRCGLEMALLNAMAVRHDSSLLGILH--YQKEENGSAQPHSVQICALLDSEGTPLEVA 1155
Query: 661 SIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
+A LV+EGF+AIKLKV RR ++DA V+QEVR+ VG +IELR DAN WT++EA EF
Sbjct: 1156 YVARKLVQEGFSAIKLKVGRRVSSVQDALVMQEVRRAVGVQIELRADANCRWTFEEAREF 1215
Query: 721 GFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA 780
G L+ C+L+YIEEPVQN++D+I++ EE+GLPVALDET+D F++ PL ML KY HPGIVA
Sbjct: 1216 GLLVNSCNLKYIEEPVQNKDDLIRFHEETGLPVALDETLDDFEECPLRMLTKYTHPGIVA 1275
Query: 781 IVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKV 840
+VIKPSV+GGFENA LIARWAQ+HGKMAV+SAA+ESGLGLSAYI+F+SYLE++N
Sbjct: 1276 VVIKPSVVGGFENAALIARWAQQHGKMAVISAAYESGLGLSAYILFASYLEMENVKASTE 1335
Query: 841 MNRELCPPVAQGLGTYQWLKEDVTTDPISICHNSCRGFVEASVAKATHILQNLQINNDVI 900
+ P VA GLGTY+WL EDV + + I + GFVE +A A+ L++++INNDVI
Sbjct: 1336 QKQGTPPSVAHGLGTYRWLSEDVMMNTLGIFRSPYSGFVEGFIADASRNLKDVKINNDVI 1395
Query: 901 CKTSMEEQVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKA 960
+TS V RY+L V+ F FI+V ++G+ + + ++ LFLHGFLGTGEEWIPIM
Sbjct: 1396 VRTSKGIPVRRYELRVDVDGFSHFIRVHDVGE--NAEGSVALFLHGFLGTGEEWIPIMTG 1453
Query: 961 VSGSARCISIDLPGHGGSKMQNH 983
+SGSARCIS+D+PGHG S++Q+H
Sbjct: 1454 ISGSARCISVDIPGHGRSRVQSH 1476
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110742201|dbj|BAE99027.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1229 bits (3179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/983 (60%), Positives = 757/983 (77%), Gaps = 9/983 (0%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYI 60
M+LTT+DSA+HWAT S GPVH+NCPFR+PLD SP +W S+CL GLD+W S+ EPFTKY
Sbjct: 159 MVLTTVDSALHWATGSACGPVHLNCPFRDPLDGSPTNWSSNCLNGLDMWMSNAEPFTKYF 218
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
QVQ SH T Q+ E+L++++ KGLLL+GA+H EDEIWA L LA+ + WPVVAD+
Sbjct: 219 QVQ-SHKSDGVTTGQITEILQVIKEAKKGLLLIGAIHTEDEIWASLLLAKELMWPVVADV 277
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSG+RLRKL F+E ++ F+DHLDHAL S+SV++ I+FDV+IQ+GSRITSKR+SQM+
Sbjct: 278 LSGVRLRKLFKPFVEKLTHV-FVDHLDHALFSDSVRNLIEFDVVIQVGSRITSKRVSQML 336
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240
E+CFP YILVD HPCRHDPSH VTHR+QS IVQF + +LK + P R SK L+ALD
Sbjct: 337 EKCFPFAYILVDKHPCRHDPSHLVTHRVQSNIVQFANCVLKSRFPWRRSKLHGHLQALDG 396
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
+A E+SFQI A+ SLTEP+VAH LS+ALTS SALF+GNSM IRD+DMYG + +H V
Sbjct: 397 AIAREMSFQISAESSLTEPYVAHMLSKALTSKSALFIGNSMPIRDVDMYGCSSENSSHVV 456
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
D+ML++E P QWI+V GNRGASGIDGLLS+A GFAVGC K V+CVVGDISFLHDTNGLA
Sbjct: 457 -DMMLSAELPCQWIQVTGNRGASGIDGLLSSATGFAVGCKKRVVCVVGDISFLHDTNGLA 515
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
ILKQR+ RKP+ +LVINN GG IF LLPIA +TEP +L+QYFYT H+ISI+NLCLAHG+
Sbjct: 516 ILKQRIARKPMTILVINNRGGGIFRLLPIAKKTEPSVLNQYFYTAHDISIENLCLAHGVR 575
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNVLSQF 480
+V V TK ELE+AL + D ++EVES I+ANA HS L +FARQ+A+++L ++S
Sbjct: 576 YVHVGTKSELEDALFVPSVEEMDCIVEVESSINANAIVHSTLERFARQAAENSLGIVSAS 635
Query: 481 SVPDTISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVG 540
S + ++ +C++ ++YS YR++LC PT S+F REGFILSL LEDGS+G
Sbjct: 636 SFLHPMIKNVLLCQVSGIQYSQYRVKLCDRPT--ICSDEFSQFHREGFILSLTLEDGSIG 693
Query: 541 YGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIF 600
YGEVAPL + ENL+D E QL+ +LH M AK SY LPLL GS SSWIWS LGI A IF
Sbjct: 694 YGEVAPLNSNVENLMDVEGQLQLVLHLMNEAKFSYMLPLLNGSISSWIWSELGITASSIF 753
Query: 601 PSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVA 660
PSVRCGLEMA+LNA+AV+H SS L IL+ + +E S + S++ICAL+DS +P+EVA
Sbjct: 754 PSVRCGLEMALLNAMAVRHDSSLLGILH--YQKEENGSAQPHSVQICALLDSEGTPLEVA 811
Query: 661 SIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
+A LV+EGF+AIKLKV RR ++DA V+QEVR+ VG +IELR DAN WT++EA EF
Sbjct: 812 YVARKLVQEGFSAIKLKVGRRVSSVQDALVMQEVRRAVGVQIELRADANCRWTFEEAREF 871
Query: 721 GFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA 780
G L+ C+L+YIEEPVQN++D+I++ EE+GLPVALDET+D F++ PL ML KY HPGIVA
Sbjct: 872 GLLVNSCNLKYIEEPVQNKDDLIRFHEETGLPVALDETLDDFEECPLRMLTKYTHPGIVA 931
Query: 781 IVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKV 840
+VIKPSV+GGFENA LIARWAQ+HGKMAV+SAA+ESGLGLSAYI+F+SYLE++N
Sbjct: 932 VVIKPSVVGGFENAALIARWAQQHGKMAVISAAYESGLGLSAYILFASYLEMENVKASTE 991
Query: 841 MNRELCPPVAQGLGTYQWLKEDVTTDPISICHNSCRGFVEASVAKATHILQNLQINNDVI 900
+ P VA GLGTY+WL EDV + + I + GFVE +A A+ L++++INNDVI
Sbjct: 992 QKQGTPPSVAHGLGTYRWLSEDVMMNTLGIFRSPYSGFVEGFIADASRNLKDVKINNDVI 1051
Query: 901 CKTSMEEQVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKA 960
+TS V RY+L V+ F FI+V ++G+ + + ++ LFLHGFLGTGEEWIPIM
Sbjct: 1052 VRTSKGIPVRRYELRVDVDGFSHFIRVHDVGE--NAEGSVALFLHGFLGTGEEWIPIMTG 1109
Query: 961 VSGSARCISIDLPGHGGSKMQNH 983
+SGSARCIS+D+PGHG S++Q+H
Sbjct: 1110 ISGSARCISVDIPGHGRSRVQSH 1132
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145337303|ref|NP_177055.2| 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding protein [Arabidopsis thaliana] gi|341941250|sp|Q15KI9.2|PHYLO_ARATH RecName: Full=Protein PHYLLO, chloroplastic; Includes: RecName: Full=Inactive isochorismate synthase; AltName: Full=MENF; Includes: RecName: Full=2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase; AltName: Full=MEND; Includes: RecName: Full=o-succinylbenzoate synthase; AltName: Full=MENC; Includes: RecName: Full=2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase; AltName: Full=MENH; Flags: Precursor gi|332196734|gb|AEE34855.1| 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1229 bits (3179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/983 (60%), Positives = 757/983 (77%), Gaps = 9/983 (0%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYI 60
M+LTT+DSA+HWAT S GPVH+NCPFR+PLD SP +W S+CL GLD+W S+ EPFTKY
Sbjct: 503 MVLTTVDSALHWATGSACGPVHLNCPFRDPLDGSPTNWSSNCLNGLDMWMSNAEPFTKYF 562
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
QVQ SH T Q+ E+L++++ KGLLL+GA+H EDEIWA L LA+ + WPVVAD+
Sbjct: 563 QVQ-SHKSDGVTTGQITEILQVIKEAKKGLLLIGAIHTEDEIWASLLLAKELMWPVVADV 621
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSG+RLRKL F+E ++ F+DHLDHAL S+SV++ I+FDV+IQ+GSRITSKR+SQM+
Sbjct: 622 LSGVRLRKLFKPFVEKLTHV-FVDHLDHALFSDSVRNLIEFDVVIQVGSRITSKRVSQML 680
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240
E+CFP YILVD HPCRHDPSH VTHR+QS IVQF + +LK + P R SK L+ALD
Sbjct: 681 EKCFPFAYILVDKHPCRHDPSHLVTHRVQSNIVQFANCVLKSRFPWRRSKLHGHLQALDG 740
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
+A E+SFQI A+ SLTEP+VAH LS+ALTS SALF+GNSM IRD+DMYG + +H V
Sbjct: 741 AIAREMSFQISAESSLTEPYVAHMLSKALTSKSALFIGNSMPIRDVDMYGCSSENSSHVV 800
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
D+ML++E P QWI+V GNRGASGIDGLLS+A GFAVGC K V+CVVGDISFLHDTNGLA
Sbjct: 801 -DMMLSAELPCQWIQVTGNRGASGIDGLLSSATGFAVGCKKRVVCVVGDISFLHDTNGLA 859
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
ILKQR+ RKP+ +LVINN GG IF LLPIA +TEP +L+QYFYT H+ISI+NLCLAHG+
Sbjct: 860 ILKQRIARKPMTILVINNRGGGIFRLLPIAKKTEPSVLNQYFYTAHDISIENLCLAHGVR 919
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNVLSQF 480
+V V TK ELE+AL + D ++EVES I+ANA HS L +FARQ+A+++L ++S
Sbjct: 920 YVHVGTKSELEDALFVPSVEEMDCIVEVESSINANAIVHSTLERFARQAAENSLGIVSAS 979
Query: 481 SVPDTISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVG 540
S + ++ +C++ ++YS YR++LC PT S+F REGFILSL LEDGS+G
Sbjct: 980 SFLHPMIKNVLLCQVSGIQYSQYRVKLCDRPT--ICSDEFSQFHREGFILSLTLEDGSIG 1037
Query: 541 YGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIF 600
YGEVAPL + ENL+D E QL+ +LH M AK SY LPLL GS SSWIWS LGI A IF
Sbjct: 1038 YGEVAPLNSNVENLMDVEGQLQLVLHLMNEAKFSYMLPLLNGSISSWIWSELGITASSIF 1097
Query: 601 PSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVA 660
PSVRCGLEMA+LNA+AV+H SS L IL+ + +E S + S++ICAL+DS +P+EVA
Sbjct: 1098 PSVRCGLEMALLNAMAVRHDSSLLGILH--YQKEENGSAQPHSVQICALLDSEGTPLEVA 1155
Query: 661 SIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
+A LV+EGF+AIKLKV RR ++DA V+QEVR+ VG +IELR DAN WT++EA EF
Sbjct: 1156 YVARKLVQEGFSAIKLKVGRRVSSVQDALVMQEVRRAVGVQIELRADANCRWTFEEAREF 1215
Query: 721 GFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA 780
G L+ C+L+YIEEPVQN++D+I++ EE+GLPVALDET+D F++ PL ML KY HPGIVA
Sbjct: 1216 GLLVNSCNLKYIEEPVQNKDDLIRFHEETGLPVALDETLDDFEECPLRMLTKYTHPGIVA 1275
Query: 781 IVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKV 840
+VIKPSV+GGFENA LIARWAQ+HGKMAV+SAA+ESGLGLSAYI+F+SYLE++N
Sbjct: 1276 VVIKPSVVGGFENAALIARWAQQHGKMAVISAAYESGLGLSAYILFASYLEMENVKASTE 1335
Query: 841 MNRELCPPVAQGLGTYQWLKEDVTTDPISICHNSCRGFVEASVAKATHILQNLQINNDVI 900
+ P VA GLGTY+WL EDV + + I + GFVE +A A+ L++++INNDVI
Sbjct: 1336 QKQGTPPSVAHGLGTYRWLSEDVMMNTLGIFRSPYSGFVEGFIADASRNLKDVKINNDVI 1395
Query: 901 CKTSMEEQVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKA 960
+TS V RY+L V+ F FI+V ++G+ + + ++ LFLHGFLGTGEEWIPIM
Sbjct: 1396 VRTSKGIPVRRYELRVDVDGFSHFIRVHDVGE--NAEGSVALFLHGFLGTGEEWIPIMTG 1453
Query: 961 VSGSARCISIDLPGHGGSKMQNH 983
+SGSARCIS+D+PGHG S++Q+H
Sbjct: 1454 ISGSARCISVDIPGHGRSRVQSH 1476
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555334|ref|XP_003545988.1| PREDICTED: protein PHYLLO, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1205 bits (3117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/979 (61%), Positives = 729/979 (74%), Gaps = 50/979 (5%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYI 60
M+LTTLDSAVHWATSSP GPVHINCPFREPL++SP W+SSCL GLD+W ++ EPFTKYI
Sbjct: 458 MVLTTLDSAVHWATSSPCGPVHINCPFREPLESSPCRWLSSCLSGLDLWMANAEPFTKYI 517
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
+Q SH C + +M EVL L+ N LLL GA+H EDE+WA L LA+H++WPVVADI
Sbjct: 518 HMQLSHTCINAP-GEMTEVLNLILRANNSLLLFGAIHTEDEMWAALLLAKHLQWPVVADI 576
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSGLRLRKLL SF + E+N +F+D+LDHALLS+SVK W++ DV+IQIGSRITSKRI Q+I
Sbjct: 577 LSGLRLRKLLTSFPDIERNFIFVDNLDHALLSDSVKGWLEVDVVIQIGSRITSKRICQII 636
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240
E+C P +YI+VD HP RHDPSH VTHRIQ++I +FV +LK VPH S W + L+ L
Sbjct: 637 EDCAPFSYIMVDKHPHRHDPSHIVTHRIQTSIFEFVGCILKAAVPHTRSMWSTSLQLLSK 696
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
MV EI FQI A+ SLTEP+VAH +S AL+S SALF+GNSM IRD ++YG +W+ C +V
Sbjct: 697 MVEWEIKFQITAECSLTEPYVAHVMSEALSSESALFLGNSMPIRDANIYGCSWSICYQSV 756
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
+ ++LNS+ P +RVA NRGASGIDG+LSTAIGFAVGCNK VLCV+GDIS LHDTNGLA
Sbjct: 757 SSLLLNSDLPINLVRVAANRGASGIDGILSTAIGFAVGCNKKVLCVIGDISLLHDTNGLA 816
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
IL QR RKP+ +LVINNHGGAIFS LP+AD+ EP IL QYFYT+HNISI+ LC+AHG+
Sbjct: 817 ILNQRKLRKPMTILVINNHGGAIFSTLPLADKVEPYILHQYFYTSHNISIRQLCMAHGVK 876
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNVLSQF 480
H+ VKTK EL+EA+ ++QH D ++E+ES I+ANA FH
Sbjct: 877 HLHVKTKAELKEAMCVAQHEQMDCMVEIESSINANANFH--------------------- 915
Query: 481 SVPDTISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVG 540
RI L APPTS+++ F REGFILSL LE+GSVG
Sbjct: 916 -----------------------RIALEAPPTSTFVSDGCKEFYREGFILSLVLEEGSVG 952
Query: 541 YGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIF 600
YGEVAP++IH+ENL+DAE QLRFL+H M +S FL LLKGSFS WIW LGI IF
Sbjct: 953 YGEVAPIDIHRENLVDAEYQLRFLIHVMEHVDVSCFLSLLKGSFSYWIWHELGIMPSSIF 1012
Query: 601 PSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVA 660
PSVRCGLEMAILNAIA GS+ LNILYP + + +RS +++ICALIDSN SP EVA
Sbjct: 1013 PSVRCGLEMAILNAIADAKGSNMLNILYPSINGNNK-CERSLNVQICALIDSNGSPTEVA 1071
Query: 661 SIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
++A L EEGF+AIKLKVAR DP+ DA +IQEVRKKVG +I +R DANR WTY+EA++F
Sbjct: 1072 NVAAKLTEEGFSAIKLKVARGGDPMHDAALIQEVRKKVGCQIIIRADANRTWTYEEAMKF 1131
Query: 721 GFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA 780
L+KDC+LQYIEEPVQ+E+DI+K+CEESGLP+ALDETID Q++P+ L K+ HP I A
Sbjct: 1132 SSLVKDCNLQYIEEPVQDEDDILKFCEESGLPIALDETIDNIQENPMEKLAKFTHPAIAA 1191
Query: 781 IVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKV 840
+VIKPSV+GGFENA LIA+WA + GKMAVVSAAFES L LSAY FSSYLEL + KV
Sbjct: 1192 VVIKPSVVGGFENAALIAQWAHQMGKMAVVSAAFESSLSLSAYTQFSSYLELLSLGTFKV 1251
Query: 841 MNRELCPPVAQGLGTYQWLKEDVTTDPISICHNSCRGFVEASVAKATHILQNLQINNDVI 900
++ VA GLGTY+WLKEDVT P+ IC N GFVEASVA A+ ++ + Q+N VI
Sbjct: 1252 LDDAASGTVAHGLGTYRWLKEDVTPSPLLICRNPQTGFVEASVANASRLVHDFQVNQKVI 1311
Query: 901 CKTSMEEQVLRYQLNVNSKDF-CSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMK 959
EEQV RYQ V + CSF +V+E G + + DN+L+FLHGFLGTGE+WI IMK
Sbjct: 1312 SYIIAEEQVHRYQYKVELNNLSCSF-EVRETGLKTN--DNVLVFLHGFLGTGEDWINIMK 1368
Query: 960 AVSGSARCISIDLPGHGGS 978
SGSA+CIS+DLPGHG S
Sbjct: 1369 TFSGSAKCISVDLPGHGKS 1387
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242062128|ref|XP_002452353.1| hypothetical protein SORBIDRAFT_04g024160 [Sorghum bicolor] gi|241932184|gb|EES05329.1| hypothetical protein SORBIDRAFT_04g024160 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 1021 bits (2641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/991 (51%), Positives = 687/991 (69%), Gaps = 16/991 (1%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYI 60
M+LTTLDSA ++A +P GPVHINC FREPLD + +HW CL+GLD W + EP+T+Y+
Sbjct: 497 MVLTTLDSAAYYAMQAPQGPVHINCAFREPLDYTNQHWNVDCLRGLDKWFKNSEPYTRYL 556
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
+++ A +Y+ C + EVLE+++ +GLLLVGA+H ++++WAV LARH+ WPV DI
Sbjct: 557 RMKTVSAFGNYS-CSVMEVLEIIEKAEQGLLLVGAIHTDEDMWAVALLARHLSWPVATDI 615
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSGLRLRK++ S ++NILF+DH+D LLS+S K+WI DVI+QIGSRITSKR+ +
Sbjct: 616 LSGLRLRKVVNSLPGFDKNILFIDHIDQILLSDSAKNWISPDVILQIGSRITSKRVGMFL 675
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240
E FP +YIL+D HPCRHDPSH VTHRIQ+ + +F L + + S+W L L+
Sbjct: 676 ETSFPSSYILIDRHPCRHDPSHIVTHRIQANVAEFAASLRRCTFQRKRSRWTEILTILNS 735
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
+V+ EI FQI A SLTEP+VAH + +L ++ +FVGNSM IRDLDM+G W T
Sbjct: 736 VVSQEIMFQIHAKCSLTEPYVAHVIGESLCGDAVMFVGNSMVIRDLDMFGNGWMDYTTNG 795
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
++M + VAGNRGASGIDGL+STAIGFAVG NKHV CVVGDISFLHDTNGL+
Sbjct: 796 NNVMTHHLPDFVGTAVAGNRGASGIDGLISTAIGFAVGSNKHVFCVVGDISFLHDTNGLS 855
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
+L QR RKP+ ++V+NNHGGAIFS LP+A T P+IL+++FYT+H+ISI LC AH +
Sbjct: 856 LLNQRAWRKPMTIIVVNNHGGAIFSFLPVAKTTSPQILEKFFYTSHDISISELCSAHRVK 915
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNVLSQF 480
H +V+TK EL +AL S D V+EV++ ID+NA FH ++ F+ S L L +
Sbjct: 916 HFRVQTKEELHDALVKSNMEQVDCVVEVDNSIDSNANFHRIMSMFSNYSTSQYLAYLLEA 975
Query: 481 SVPDTISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVG 540
+ ++ + +I +E LYRIQL AP TS D RF EGF+L L ++D VG
Sbjct: 976 PCLKSDVDAIPVDRIDAVECMLYRIQLSAPRTSGLSD---GRFIHEGFVLKLRVDDNIVG 1032
Query: 541 YGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIF 600
+GEVAP+EIH+E+LLD EEQLRFLLH + + + F+PLL+GSFS+WIW++LGIP IF
Sbjct: 1033 FGEVAPIEIHEEDLLDVEEQLRFLLHRVKDSMLD-FIPLLRGSFSNWIWTSLGIPPSSIF 1091
Query: 601 PSVRCGLEMAILNAIAVKHGSSFLNILY---PLTEIDEEI----SKRSTSIKICALIDSN 653
PSV+CGLEMAILN +A + S +L PL DE + S SI+ICAL+D N
Sbjct: 1092 PSVKCGLEMAILNLLASQRKCSLFKVLAGCDPLGR-DENVIEYNQNSSGSIQICALVDCN 1150
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWT 713
SP+EVA L EGFT KLKV RR PI+DA + ++R+ VG++I +RVDAN+ WT
Sbjct: 1151 GSPMEVALAVAKLAAEGFTTFKLKVGRRESPIEDAAALHKIREVVGYQINIRVDANKKWT 1210
Query: 714 YQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKY 773
Y++A+EFG +K L+YIEEPV + D+IK+CE S LPVALDETID + D + L ++
Sbjct: 1211 YEQAVEFGSRVKSLRLEYIEEPVSSVNDLIKFCENSVLPVALDETIDNLKGDIIPKLHQF 1270
Query: 774 AHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQ 833
HPGIVA+VIKPSV+GGFENA IA+WAQ H KMAV+S+ +ES +GL++YI + Y++ Q
Sbjct: 1271 VHPGIVALVIKPSVVGGFENAAHIAKWAQLHDKMAVISSTYESSIGLASYIQLAHYVDQQ 1330
Query: 834 NAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICHNSCRGFVEASVAKATHILQNL 893
N+ + ++ N+ C A GLGTYQWL+EDV+ + I + + ASV A L +L
Sbjct: 1331 NSIVSRIRNKVTCRAAAHGLGTYQWLREDVSEQKLKIHASPLGDGIRASVEDAHGYLHHL 1390
Query: 894 QINNDVICKTSMEEQVLRYQLNVNSKDFCSF-IKVQEIGQRIDIQDNILLFLHGFLGTGE 952
IN+D I +T EE++ Y + V+ D CS+ +K++E G + + ++L LHGFLGT E
Sbjct: 1391 NINDDKIQRTYGEEKLRSYSIQVDVDDDCSYLVKLREAGDHTN--EKVVLLLHGFLGTSE 1448
Query: 953 EWIPIMKAVSGSARCISIDLPGHGGSKMQNH 983
+WIP+M A++ SAR I+IDLPGHG S++ H
Sbjct: 1449 DWIPMMNALAPSARVIAIDLPGHGESQILQH 1479
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 983 | ||||||
| TAIR|locus:2205450 | 1715 | PHYLLO "PHYLLO" [Arabidopsis t | 0.990 | 0.567 | 0.605 | 0.0 | |
| TIGR_CMR|SO_4573 | 573 | SO_4573 "2-succinyl-6-hydroxy- | 0.273 | 0.469 | 0.271 | 1.2e-26 | |
| TIGR_CMR|BA_5111 | 584 | BA_5111 "2-succinyl-6-hydroxy- | 0.144 | 0.243 | 0.350 | 3e-24 | |
| UNIPROTKB|P17109 | 556 | menD "MenD" [Escherichia coli | 0.200 | 0.354 | 0.326 | 5.8e-18 | |
| UNIPROTKB|Q9KQM3 | 570 | menD "2-succinyl-5-enolpyruvyl | 0.275 | 0.475 | 0.286 | 2.9e-17 | |
| TIGR_CMR|VC_1975 | 570 | VC_1975 "2-succinyl-6-hydroxy- | 0.275 | 0.475 | 0.286 | 2.9e-17 | |
| UNIPROTKB|Q9KQM6 | 332 | menC "o-succinylbenzoate synth | 0.162 | 0.481 | 0.307 | 1.6e-16 | |
| TIGR_CMR|VC_1972 | 332 | VC_1972 "O-succinylbenzoate-Co | 0.162 | 0.481 | 0.307 | 1.6e-16 | |
| UNIPROTKB|O06421 | 554 | menD "2-succinyl-5-enolpyruvyl | 0.214 | 0.380 | 0.276 | 2.8e-13 | |
| TIGR_CMR|SO_4575 | 374 | SO_4575 "O-succinylbenzoate-Co | 0.309 | 0.812 | 0.252 | 1.8e-11 |
| TAIR|locus:2205450 PHYLLO "PHYLLO" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3085 (1091.0 bits), Expect = 0., P = 0.
Identities = 595/983 (60%), Positives = 756/983 (76%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYI 60
M+LTT+DSA+HWAT S GPVH+NCPFR+PLD SP +W S+CL GLD+W S+ EPFTKY
Sbjct: 503 MVLTTVDSALHWATGSACGPVHLNCPFRDPLDGSPTNWSSNCLNGLDMWMSNAEPFTKYF 562
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
QVQ SH T Q+ E+L++++ KGLLL+GA+H EDEIWA L LA+ + WPVVAD+
Sbjct: 563 QVQ-SHKSDGVTTGQITEILQVIKEAKKGLLLIGAIHTEDEIWASLLLAKELMWPVVADV 621
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSG+RLRKL F+E ++ F+DHLDHAL S+SV++ I+FDV+IQ+GSRITSKR+SQM+
Sbjct: 622 LSGVRLRKLFKPFVEKLTHV-FVDHLDHALFSDSVRNLIEFDVVIQVGSRITSKRVSQML 680
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240
E+CFP YILVD HPCRHDPSH VTHR+QS IVQF + +LK + P R SK L+ALD
Sbjct: 681 EKCFPFAYILVDKHPCRHDPSHLVTHRVQSNIVQFANCVLKSRFPWRRSKLHGHLQALDG 740
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
+A E+SFQI A+ SLTEP+VAH LS+ALTS SALF+GNSM IRD+DMYG + +H V
Sbjct: 741 AIAREMSFQISAESSLTEPYVAHMLSKALTSKSALFIGNSMPIRDVDMYGCSSENSSHVV 800
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
D+ML++E P QWI+V GNRGASGIDGLLS+A GFAVGC K V+CVVGDISFLHDTNGLA
Sbjct: 801 -DMMLSAELPCQWIQVTGNRGASGIDGLLSSATGFAVGCKKRVVCVVGDISFLHDTNGLA 859
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
ILKQR+ RKP+ +LVINN GG IF LLPIA +TEP +L+QYFYT H+ISI+NLCLAHG+
Sbjct: 860 ILKQRIARKPMTILVINNRGGGIFRLLPIAKKTEPSVLNQYFYTAHDISIENLCLAHGVR 919
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNVLSQF 480
+V V TK ELE+AL + D ++EVES I+ANA HS L +FARQ+A+++L ++S
Sbjct: 920 YVHVGTKSELEDALFVPSVEEMDCIVEVESSINANAIVHSTLERFARQAAENSLGIVSAS 979
Query: 481 SVPDTISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVG 540
S + ++ +C++ ++YS YR++LC PT S+F REGFILSL LEDGS+G
Sbjct: 980 SFLHPMIKNVLLCQVSGIQYSQYRVKLCDRPT--ICSDEFSQFHREGFILSLTLEDGSIG 1037
Query: 541 YGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIF 600
YGEVAPL + ENL+D E QL+ +LH M AK SY LPLL GS SSWIWS LGI A IF
Sbjct: 1038 YGEVAPLNSNVENLMDVEGQLQLVLHLMNEAKFSYMLPLLNGSISSWIWSELGITASSIF 1097
Query: 601 PSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVA 660
PSVRCGLEMA+LNA+AV+H SS L IL+ E E S + S++ICAL+DS +P+EVA
Sbjct: 1098 PSVRCGLEMALLNAMAVRHDSSLLGILHYQKE--ENGSAQPHSVQICALLDSEGTPLEVA 1155
Query: 661 SIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
+A LV+EGF+AIKLKV RR ++DA V+QEVR+ VG +IELR DAN WT++EA EF
Sbjct: 1156 YVARKLVQEGFSAIKLKVGRRVSSVQDALVMQEVRRAVGVQIELRADANCRWTFEEAREF 1215
Query: 721 GFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA 780
G L+ C+L+YIEEPVQN++D+I++ EE+GLPVALDET+D F++ PL ML KY HPGIVA
Sbjct: 1216 GLLVNSCNLKYIEEPVQNKDDLIRFHEETGLPVALDETLDDFEECPLRMLTKYTHPGIVA 1275
Query: 781 IVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKV 840
+VIKPSV+GGFENA LIARWAQ+HGKMAV+SAA+ESGLGLSAYI+F+SYLE++N
Sbjct: 1276 VVIKPSVVGGFENAALIARWAQQHGKMAVISAAYESGLGLSAYILFASYLEMENVKASTE 1335
Query: 841 MNRELCPPVAQGLGTYQWLKEDVTTDPISICHNSCRGFVEASVAKATHILQNLQINNDVI 900
+ P VA GLGTY+WL EDV + + I + GFVE +A A+ L++++INNDVI
Sbjct: 1336 QKQGTPPSVAHGLGTYRWLSEDVMMNTLGIFRSPYSGFVEGFIADASRNLKDVKINNDVI 1395
Query: 901 CKTSMEEQVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKA 960
+TS V RY+L V+ F FI+V ++G+ + + ++ LFLHGFLGTGEEWIPIM
Sbjct: 1396 VRTSKGIPVRRYELRVDVDGFSHFIRVHDVGE--NAEGSVALFLHGFLGTGEEWIPIMTG 1453
Query: 961 VSGSARCISIDLPGHGGSKMQNH 983
+SGSARCIS+D+PGHG S++Q+H
Sbjct: 1454 ISGSARCISVDIPGHGRSRVQSH 1476
|
|
| TIGR_CMR|SO_4573 SO_4573 "2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 83/306 (27%), Positives = 128/306 (41%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWM-----SSCLKGLDIWTSSIEP 55
M+LTTLD AV T PVHINC +REPL S S LK L W P
Sbjct: 149 MLLTTLDEAVANQTR----PVHINCMYREPLYPSELTATILDSESPYLKPLQTWLQQARP 204
Query: 56 FTKY-IQVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRW 114
+T Y + Q SH + ++ V G KG+++ G + E + ++ L++ I W
Sbjct: 205 YTIYGKREQLSHPSED-------AIMRFVHG--KGVIIAGTLTPEQDPQQLIALSQKIGW 255
Query: 115 PVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ-FDVIIQIGSRITS 173
P++ D S LR Q+ + ++D L ++ +Q D ++ G R+ S
Sbjct: 256 PLLTDAQSQLR------------QHPAAIGNIDQLLQHPKARNLLQEADRVLVFGGRLLS 303
Query: 174 KRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCS 233
KR+ + E +Y V R DPSH+ H + QF S+ W +
Sbjct: 304 KRLIAYLAEQNWHSYWQVLPQQDRLDPSHNAKHIWHANAAQFAQLNW---YRSSSANWAN 360
Query: 234 FLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNW 293
L + + + + E V ++ LF+GNS+ +R DMY
Sbjct: 361 TLITYNDDL-HHLFVRNIDQGEFGEAQVIRAIANTRPLEQQLFIGNSLPVRLYDMYAPV- 418
Query: 294 TTCTHT 299
+ CT T
Sbjct: 419 SCCTAT 424
|
|
| TIGR_CMR|BA_5111 BA_5111 "2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 205 (77.2 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 53/151 (35%), Positives = 84/151 (55%)
Query: 314 IRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILM 373
I+V NRG +GIDG++STA+G ++ C+ VL V+GD+SF HD NGL L ++ I +
Sbjct: 424 IQVMANRGVNGIDGIISTALGASMICDPLVL-VIGDLSFYHDLNGL--LAAKLHELNITI 480
Query: 374 LVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEA 433
+V+NN GG IFS LP ++ E + F T + +++ +G + +V + E
Sbjct: 481 VVVNNDGGGIFSFLPQYEKKEH--FESLFGTPIGLDYEHVVTMYGGSFSRVNGWEQFRE- 537
Query: 434 LSMSQHLGTDRVIEVESCI--DANATFHSML 462
+ + + T+ + VE C D N T H L
Sbjct: 538 -EVQKGVTTEGLHVVEICTNRDENLTLHRTL 567
|
|
| UNIPROTKB|P17109 menD "MenD" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 220 (82.5 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 68/208 (32%), Positives = 102/208 (49%)
Query: 259 PHVAHELSRALTSNSALFVGNSMAIRDLDMY---GRNWTTCTHTVADIMLNSEFPHQWIR 315
P +A + +A+ + F +A R D G+ + + V I S+ P +
Sbjct: 350 PRLAEQAMQAVIARRDAFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQLPAGY-P 408
Query: 316 VAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLV 375
V NRGASGIDGLLSTA G K L +VGD+S L+D N LA+L+Q P++++V
Sbjct: 409 VYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQ--VSAPLVLIV 466
Query: 376 INNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALS 435
+NN+GG IFSLLP R ++ N+ ++ L + + + ELE A +
Sbjct: 467 VNNNGGQIFSLLPTPQSERER----FYLMPQNVHFEHAAAMFELKYHRPQNWQELETAFA 522
Query: 436 MSQHLGTDRVIE-VESCIDANATFHSML 462
+ T VIE V + D T +L
Sbjct: 523 DAWRTPTTTVIEMVVNDTDGAQTLQQLL 550
|
|
| UNIPROTKB|Q9KQM3 menD "2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 197 (74.4 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 92/321 (28%), Positives = 150/321 (46%)
Query: 145 HLDHALLSESVKDWI-QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCR-HDPSH 202
H D L ++ + Q ++Q GSRI SKR+ Q +E C L + H H +
Sbjct: 266 HFDLWLQHPKAREQLNQAQCVVQFGSRIVSKRLLQWLEAW--CATGLGEYHYIAPHSARN 323
Query: 203 SVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQICADYSLTEPHVA 262
+ H +Q Q+V ++ H W + L +A + + Q AD
Sbjct: 324 NPWHAMQQ---QWV-----CEISH----WVDAV--LSKRLAGQHTQQGWADELTHYAQSV 369
Query: 263 HELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWI-------- 314
+L++ S+S+L + +A+ LD+ R T AD+ L + + +
Sbjct: 370 RQLAQLHFSSSSL---SEVALA-LDLTERA------TQADLFLGNSLIVRLVDIFSALDG 419
Query: 315 -RVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILM 373
V NRGASGIDGL++TA G K +L ++GD S L+D N LA++ R +P ++
Sbjct: 420 REVFSNRGASGIDGLVATASGVQRARQKPLLMLLGDTSLLYDLNSLALM--RNPAQPTVI 477
Query: 374 LVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEA 433
+V NN GGAIF LLP+ +E R + + H + + GL + +T +E +
Sbjct: 478 VVTNNDGGAIFDLLPVP--SEQR--EALYQMPHGMDFAHAASQFGLAYCAAQT-LEHYQT 532
Query: 434 LSMSQHL----GTDRVIEVES 450
L + +H GT +IEV++
Sbjct: 533 L-VEEHFAHGAGT-LLIEVKT 551
|
|
| TIGR_CMR|VC_1975 VC_1975 "2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase/2-oxoglutarate decarboxylase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 197 (74.4 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 92/321 (28%), Positives = 150/321 (46%)
Query: 145 HLDHALLSESVKDWI-QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCR-HDPSH 202
H D L ++ + Q ++Q GSRI SKR+ Q +E C L + H H +
Sbjct: 266 HFDLWLQHPKAREQLNQAQCVVQFGSRIVSKRLLQWLEAW--CATGLGEYHYIAPHSARN 323
Query: 203 SVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQICADYSLTEPHVA 262
+ H +Q Q+V ++ H W + L +A + + Q AD
Sbjct: 324 NPWHAMQQ---QWV-----CEISH----WVDAV--LSKRLAGQHTQQGWADELTHYAQSV 369
Query: 263 HELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWI-------- 314
+L++ S+S+L + +A+ LD+ R T AD+ L + + +
Sbjct: 370 RQLAQLHFSSSSL---SEVALA-LDLTERA------TQADLFLGNSLIVRLVDIFSALDG 419
Query: 315 -RVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILM 373
V NRGASGIDGL++TA G K +L ++GD S L+D N LA++ R +P ++
Sbjct: 420 REVFSNRGASGIDGLVATASGVQRARQKPLLMLLGDTSLLYDLNSLALM--RNPAQPTVI 477
Query: 374 LVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEA 433
+V NN GGAIF LLP+ +E R + + H + + GL + +T +E +
Sbjct: 478 VVTNNDGGAIFDLLPVP--SEQR--EALYQMPHGMDFAHAASQFGLAYCAAQT-LEHYQT 532
Query: 434 LSMSQHL----GTDRVIEVES 450
L + +H GT +IEV++
Sbjct: 533 L-VEEHFAHGAGT-LLIEVKT 551
|
|
| UNIPROTKB|Q9KQM6 menC "o-succinylbenzoate synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 186 (70.5 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 52/169 (30%), Positives = 88/169 (52%)
Query: 656 PVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQ 715
P E+ + L G K+KV +PI+D ++ + + + LR+DANR WT
Sbjct: 116 PDELLPVLNNL--PGQKVAKVKVGLY-EPIRDGMLVNLFLESMPD-LTLRLDANRAWTPA 171
Query: 716 EALEFGFLIKDC---DLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEK 772
+AL+F + + ++EEP Q+ + I + ++G+ +A DET+ + +D LE
Sbjct: 172 KALKFAQYVAPSLRSRIAFLEEPCQSPSESIAFSIDTGIAIAWDETLQEAVRDADFALEN 231
Query: 773 YAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLS 821
G+ IVIKP++IG + A+ G AV+S++ ES LGL+
Sbjct: 232 LL--GVKTIVIKPTLIGSVYRVEALIEKAKTLGLQAVISSSLESSLGLN 278
|
|
| TIGR_CMR|VC_1972 VC_1972 "O-succinylbenzoate-CoA synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 186 (70.5 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 52/169 (30%), Positives = 88/169 (52%)
Query: 656 PVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQ 715
P E+ + L G K+KV +PI+D ++ + + + LR+DANR WT
Sbjct: 116 PDELLPVLNNL--PGQKVAKVKVGLY-EPIRDGMLVNLFLESMPD-LTLRLDANRAWTPA 171
Query: 716 EALEFGFLIKDC---DLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEK 772
+AL+F + + ++EEP Q+ + I + ++G+ +A DET+ + +D LE
Sbjct: 172 KALKFAQYVAPSLRSRIAFLEEPCQSPSESIAFSIDTGIAIAWDETLQEAVRDADFALEN 231
Query: 773 YAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLS 821
G+ IVIKP++IG + A+ G AV+S++ ES LGL+
Sbjct: 232 LL--GVKTIVIKPTLIGSVYRVEALIEKAKTLGLQAVISSSLESSLGLN 278
|
|
| UNIPROTKB|O06421 menD "2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 200 (75.5 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 68/246 (27%), Positives = 121/246 (49%)
Query: 231 WCSFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYG 290
W A++ + + Q+ A T HVA +S AL L +G S +RD+ + G
Sbjct: 328 WLDRCAAMNRHAIAAVREQLAAHPLTTGLHVAAAVSHALRPGDQLVLGASNPVRDVALAG 387
Query: 291 RNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAV---GCNKHV---- 343
L++ + IRV NRG +GIDG +STAIG A+ G ++
Sbjct: 388 --------------LDT----RGIRVRSNRGVAGIDGTVSTAIGAALAYEGAHERTGSPD 429
Query: 344 -----LCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398
+ ++GD++F+HD++GL I + + ++V N++GG IF LL D +
Sbjct: 430 SPPRTIALIGDLTFVHDSSGLLIGPTEPIPRSLTIVVSNDNGGGIFELLEQGDPRFSDVS 489
Query: 399 DQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEE-ALSMSQHLGTDRVIEVESCIDANAT 457
+ F T H++ + LC A+ HV+ + ++E++E ++ Q RV+EV++ +
Sbjct: 490 SRIFGTPHDVDVGALCRAY---HVESR-QIEVDELGPTLDQPGAGMRVLEVKADRSSLRQ 545
Query: 458 FHSMLR 463
H+ ++
Sbjct: 546 LHAAIK 551
|
|
| TIGR_CMR|SO_4575 SO_4575 "O-succinylbenzoate-CoA synthase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 189 (71.6 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 83/329 (25%), Positives = 159/329 (48%)
Query: 501 SLYRIQLCAPPTSSYIDHNRSRFC-REGFILSLYLE-DGSVGYGEVAPLEIHKENLLDAE 558
SLY +L P S++ + R R+G +L DG V E++ E+ + + E
Sbjct: 7 SLYLYRL---PLDSFLPVGKQRIDHRKGLVLQAKATADGEVCDTEISNAEVTDSEVTEGE 63
Query: 559 -EQLRFLLHFMTGAKISYFLPLLKGSFSSW--IWSTLGIPACEIF-PSVRCGLEMAILNA 614
++ + ++G I PL S S + L + ++ S+ C LE A +
Sbjct: 64 VKESHVEIAPLSGFDIDQ-QPLSGFSRESLDEVQQALTVLLPKLQNQSIDCLLEQAEASP 122
Query: 615 I-AVKHGSSFLNILYPLTEIDEEISKRSTSIK-ICALIDSNKSPVEVASIATTLVEEGFT 672
++ G S L+ L+ + + +T++ I D+ K+ + +A IA+ ++
Sbjct: 123 YPSIAFGLSLLHA--KLSGKLDAVRPLTTAVPLIYQPTDAPKAEL-IAKIAS--LKPSVR 177
Query: 673 AIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732
++K+KVA+ + + +I + + ++LR+DAN ++ ++AL+F + ++YI
Sbjct: 178 SVKVKVAQTSME-DELSLIYGILSQRPD-LKLRLDANCGFSLEQALDFAACLPLDSIEYI 235
Query: 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFE 792
EEP Q+ +D LP ALDE+++ DP + H G+ A++IKP ++G E
Sbjct: 236 EEPCQHPQDNHTLYRAIPLPYALDESLN----DP--DYQFVMHEGLTALIIKPMLLGSIE 289
Query: 793 NAGLIARWAQRHGKMAVVSAAFESGLGLS 821
+ A HG ++S++ ES LG++
Sbjct: 290 KLQRLIDEAHNHGVRCILSSSLESSLGIN 318
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 983 | |||
| PLN02980 | 1655 | PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ | 0.0 | |
| PRK07449 | 568 | PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hyd | 2e-99 | |
| COG1165 | 566 | COG1165, MenD, 2-succinyl-6-hydroxy-2,4-cyclohexad | 9e-84 | |
| TIGR00173 | 430 | TIGR00173, menD, 2-succinyl-5-enolpyruvyl-6-hydrox | 3e-69 | |
| cd02009 | 175 | cd02009, TPP_SHCHC_synthase, Thiamine pyrophosphat | 2e-60 | |
| cd03320 | 263 | cd03320, OSBS, o-Succinylbenzoate synthase (OSBS) | 7e-38 | |
| TIGR01927 | 307 | TIGR01927, menC_gamma/gm+, o-succinylbenzoate synt | 5e-30 | |
| COG4948 | 372 | COG4948, COG4948, L-alanine-DL-glutamate epimerase | 7e-27 | |
| cd03315 | 265 | cd03315, MLE_like, Muconate lactonizing enzyme (ML | 7e-26 | |
| PRK05105 | 322 | PRK05105, PRK05105, O-succinylbenzoate synthase; P | 5e-23 | |
| cd03319 | 316 | cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epi | 5e-23 | |
| COG1441 | 321 | COG1441, MenC, O-succinylbenzoate synthase [Coenzy | 2e-21 | |
| cd03316 | 357 | cd03316, MR_like, Mandelate racemase (MR)-like sub | 7e-18 | |
| smart00922 | 97 | smart00922, MR_MLE, Mandelate racemase / muconate | 1e-17 | |
| cd03317 | 354 | cd03317, NAAAR, N-acylamino acid racemase (NAAAR), | 8e-17 | |
| PRK02901 | 327 | PRK02901, PRK02901, O-succinylbenzoate synthase; P | 2e-16 | |
| PRK02714 | 320 | PRK02714, PRK02714, O-succinylbenzoate synthase; P | 3e-16 | |
| cd00308 | 229 | cd00308, enolase_like, Enolase-superfamily, charac | 9e-15 | |
| TIGR01928 | 324 | TIGR01928, menC_lowGC/arch, o-succinylbenzoate syn | 6e-14 | |
| pfam01188 | 69 | pfam01188, MR_MLE, Mandelate racemase / muconate l | 1e-13 | |
| cd03318 | 365 | cd03318, MLE, Muconate Lactonizing Enzyme (MLE), a | 2e-12 | |
| COG0028 | 550 | COG0028, IlvB, Thiamine pyrophosphate-requiring en | 5e-11 | |
| cd03329 | 368 | cd03329, MR_like_4, Mandelate racemase (MR)-like s | 4e-10 | |
| cd03321 | 355 | cd03321, mandelate_racemase, Mandelate racemase (M | 6e-10 | |
| TIGR03695 | 252 | TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cy | 4e-09 | |
| PRK11126 | 242 | PRK11126, PRK11126, 2-succinyl-6-hydroxy-2,4-cyclo | 1e-08 | |
| cd03328 | 352 | cd03328, MR_like_3, Mandelate racemase (MR)-like s | 3e-08 | |
| TIGR02534 | 368 | TIGR02534, mucon_cyclo, muconate and chloromuconat | 1e-07 | |
| pfam02775 | 151 | pfam02775, TPP_enzyme_C, Thiamine pyrophosphate en | 6e-07 | |
| cd00568 | 168 | cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) | 2e-06 | |
| pfam12697 | 187 | pfam12697, Abhydrolase_6, Alpha/beta hydrolase fam | 2e-06 | |
| cd03324 | 415 | cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS | 6e-06 | |
| cd03323 | 395 | cd03323, D-glucarate_dehydratase, D-Glucarate dehy | 1e-05 | |
| PRK14017 | 382 | PRK14017, PRK14017, galactonate dehydratase; Provi | 7e-05 | |
| cd03327 | 341 | cd03327, MR_like_2, Mandelate racemase (MR)-like s | 3e-04 | |
| cd02002 | 178 | cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) fa | 4e-04 | |
| PRK14875 | 371 | PRK14875, PRK14875, acetoin dehydrogenase E2 subun | 4e-04 | |
| cd02015 | 186 | cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) fa | 6e-04 | |
| TIGR03056 | 278 | TIGR03056, bchO_mg_che_rel, putative magnesium che | 0.001 | |
| cd07037 | 162 | cd07037, TPP_PYR_MenD, Pyrimidine (PYR) binding do | 0.002 | |
| COG0596 | 282 | COG0596, MhpC, Predicted hydrolases or acyltransfe | 0.003 |
| >gnl|CDD|215530 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Score = 1682 bits (4357), Expect = 0.0
Identities = 700/983 (71%), Positives = 817/983 (83%), Gaps = 6/983 (0%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYI 60
M+LTTLDSAVHWATSSP GPVHINCPFREPLD SP +WMSSCLKGLD+W S+ EPFTKYI
Sbjct: 440 MVLTTLDSAVHWATSSPCGPVHINCPFREPLDGSPTNWMSSCLKGLDMWMSNAEPFTKYI 499
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
Q+Q S A T Q+ EVLE++Q +GLLL+GA+H ED+IWA L LA+H+ WPVVADI
Sbjct: 500 QMQSSKADGDTT-GQITEVLEVIQEAKRGLLLIGAIHTEDDIWAALLLAKHLMWPVVADI 558
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSGLRLRKL SF E E NILF+DHLDHALLS+SV++WIQFDV+IQIGSRITSKR+SQM+
Sbjct: 559 LSGLRLRKLFKSFPEFELNILFVDHLDHALLSDSVRNWIQFDVVIQIGSRITSKRVSQML 618
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240
E+CFP +YILVD HPCRHDPSH VTHR+QS IVQF D LLK Q P R SKW L+ALD
Sbjct: 619 EKCFPFSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLKAQFPRRRSKWHGHLQALDG 678
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
MVA EISFQI A+ SLTEP+VAH +S ALTS+SALF+GNSMAIRD DMYG + + +
Sbjct: 679 MVAQEISFQIHAESSLTEPYVAHVISEALTSDSALFIGNSMAIRDADMYGCSSENYSSRI 738
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
D+ML++E P QWI+VAGNRGASGIDGLLSTAIGFAVGCNK VLCVVGDISFLHDTNGL+
Sbjct: 739 VDMMLSAELPCQWIQVAGNRGASGIDGLLSTAIGFAVGCNKRVLCVVGDISFLHDTNGLS 798
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
IL QR+ RKP+ +LVINNHGGAIFSLLPIA RTEPR+L+QYFYT+H+ISI+NLCLAHG+
Sbjct: 799 ILSQRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVLNQYFYTSHDISIENLCLAHGVR 858
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNVLSQF 480
H+ V TK ELE+AL SQ D V+EVES IDANA FHS LRKFA Q+A+H L +LS+
Sbjct: 859 HLHVGTKSELEDALFTSQVEQMDCVVEVESSIDANAAFHSTLRKFACQAAEHALGILSES 918
Query: 481 SVPDTISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVG 540
S +I + +CKI MEYSLYRIQLCAPPTS+ +D + +F REGFILSL LEDGSVG
Sbjct: 919 SCLHSIIDGVFLCKISGMEYSLYRIQLCAPPTSASVDFS--QFHREGFILSLSLEDGSVG 976
Query: 541 YGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIF 600
+GEVAPLEIH+E+LLD EEQLRFLLH + GAKIS+ LPLLKGSFSSWIWS LGIP IF
Sbjct: 977 FGEVAPLEIHEEDLLDVEEQLRFLLHVIKGAKISFMLPLLKGSFSSWIWSELGIPPSSIF 1036
Query: 601 PSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVA 660
PSVRCGLEMAILNAIAV+HGSS LNIL P + DE S++S S++ICAL+DSN SP+EVA
Sbjct: 1037 PSVRCGLEMAILNAIAVRHGSSLLNILDPY-QKDENGSEQSHSVQICALLDSNGSPLEVA 1095
Query: 661 SIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
+A LVEEGF+AIKLKV RR PI+DA VIQEVRK VG++IELR DANRNWTY+EA+EF
Sbjct: 1096 YVARKLVEEGFSAIKLKVGRRVSPIQDAAVIQEVRKAVGYQIELRADANRNWTYEEAIEF 1155
Query: 721 GFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA 780
G L+K C+L+YIEEPVQ+E+D+IK+CEE+GLPVALDETIDKF++ PL ML KY HPGIVA
Sbjct: 1156 GSLVKSCNLKYIEEPVQDEDDLIKFCEETGLPVALDETIDKFEECPLRMLTKYTHPGIVA 1215
Query: 781 IVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKV 840
+VIKPSV+GGFENA LIARWAQ+HGKMAV+SAA+ESGLGLSAYI F+SYLE+QNA +
Sbjct: 1216 VVIKPSVVGGFENAALIARWAQQHGKMAVISAAYESGLGLSAYIQFASYLEMQNAKASRE 1275
Query: 841 MNRELCPPVAQGLGTYQWLKEDVTTDPISICHNSCRGFVEASVAKATHILQNLQINNDVI 900
MN+ CP VA GLGTY+WLKEDVT +P+ I + GF+EASVA A+ LQ QINNDVI
Sbjct: 1276 MNKGTCPSVAHGLGTYRWLKEDVTMNPLGIFRSPYSGFIEASVADASRNLQKFQINNDVI 1335
Query: 901 CKTSMEEQVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKA 960
+T EEQV Y+L V+ F IKV E+GQ + +++LFLHGFLGTGE+WIPIMKA
Sbjct: 1336 VRTFKEEQVRTYELRVDVDGFSCLIKVHEVGQNAE--GSVVLFLHGFLGTGEDWIPIMKA 1393
Query: 961 VSGSARCISIDLPGHGGSKMQNH 983
+SGSARCISIDLPGHGGSK+QNH
Sbjct: 1394 ISGSARCISIDLPGHGGSKIQNH 1416
|
Length = 1655 |
| >gnl|CDD|236020 PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase; Validated | Back alignment and domain information |
|---|
Score = 323 bits (830), Expect = 2e-99
Identities = 142/474 (29%), Positives = 216/474 (45%), Gaps = 61/474 (12%)
Query: 3 LTTLDSAVHWATSSPYGPVHINCPFREPL-----DNSPKHWMSSCLKGLDIWTSSIEPFT 57
+TT+D+A+ A + GPVHINCPFREPL D++ W L L W
Sbjct: 150 VTTIDAALA-AQTLQAGPVHINCPFREPLYPDDDDDTGSPW----LAPLGDWWQDDWLRQ 204
Query: 58 KYIQVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVV 117
++ + +G+++ G + E E A+ LA+ + WP++
Sbjct: 205 TVQPE-----------VTSQRDWDIWRQ-KRGVVIAGRLSAE-EGQAIAALAQLLGWPLL 251
Query: 118 ADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKD-WIQFDVIIQIGSRITSKRI 176
AD LS + + D L + + +Q D++IQ GS TSKR+
Sbjct: 252 ADPLSPRN---------YAPLHPQPIPCYDLWLRNPKAAEELLQPDIVIQFGSPPTSKRL 302
Query: 177 SQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLR 236
Q + +C Y +VD P R DP+H T R+ +++ + L+ + W +
Sbjct: 303 LQWLADC-EPEYWVVDPGPGRLDPAHHATRRLTASVATW----LEAHPAEKRKPWLQEWQ 357
Query: 237 ALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTC 296
AL+ + + A+ + TE VA L+ L LFVGNS+ +RD+D +G
Sbjct: 358 ALNEKAREAVR-EQLAEDTFTEAKVAAALADLLPEGGQLFVGNSLPVRDVDAFG------ 410
Query: 297 THTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDT 356
V NRGASGIDGLLSTA G A K + ++GD+SFLHD
Sbjct: 411 ------------QLPDGYPVYSNRGASGIDGLLSTAAGVARASAKPTVALIGDLSFLHDL 458
Query: 357 NGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLA 416
NGL +LKQ P+ ++V+NN+GG IFSLLP + +++F T H + +
Sbjct: 459 NGLLLLKQV--PAPLTIVVVNNNGGGIFSLLPQPEEEPVF--ERFFGTPHGVDFAHAAAM 514
Query: 417 HGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSA 470
+GL + + +T ELEEAL+ + VIEV++ A L
Sbjct: 515 YGLEYHRPETWAELEEALADALPTPGLTVIEVKTNRSQGAQLLQALLAQVSHLI 568
|
Length = 568 |
| >gnl|CDD|224087 COG1165, MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 281 bits (720), Expect = 9e-84
Identities = 141/463 (30%), Positives = 213/463 (46%), Gaps = 57/463 (12%)
Query: 3 LTTLDS-AVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
L T+ S A A + GPVHIN PFREPL L+ T P +
Sbjct: 149 LRTIASAAAQQARTPHAGPVHINVPFREPL--------VPDLEPEGAGTPWGRPLGHWWF 200
Query: 62 VQHSHACKSYTYCQMAEVLELVQGVN--KGLLLVGAVHNEDEIWAVLHLARHIRWPVVAD 119
+T Q ++L +G+++ G + ++ +L LA + WP++AD
Sbjct: 201 -----YTGPWTVDQGPDLLSEWFFWRQKRGVIVAGRMSAQEGK-GILALANTLGWPILAD 254
Query: 120 ILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQM 179
LS LR ++ D L + + ++ D++IQ GS TSKR+ Q
Sbjct: 255 PLSPLRN---------------YIPCYDLWLANPKAAEKLRPDIVIQFGSPPTSKRLLQW 299
Query: 180 IEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239
+ + P Y +VD DPSH T R+ + + + + + W AL+
Sbjct: 300 LADTEPIEYWVVDPGGGWLDPSHHATTRLSADVATWARSIHPAGRIRKP--WLDEWLALN 357
Query: 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHT 299
+ Q+ A +LTE H+A L+ L LFVGNSM +RD+D G+
Sbjct: 358 EKARQAVRDQL-AAEALTEAHLAAALADLLPPQDQLFVGNSMPVRDVDALGQ-------- 408
Query: 300 VADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGL 359
RV NRGASGIDG +STA+G A K + ++GD+SFLHD NGL
Sbjct: 409 ----------LPAGYRVYSNRGASGIDGTVSTALGIARATQKPTVALIGDLSFLHDLNGL 458
Query: 360 AILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGL 419
+LK+ +P+ ++V+NN+GG IFSLLP A + ++ F T H + +L +GL
Sbjct: 459 LLLKKV--PQPLTIVVVNNNGGGIFSLLPQAQ--SEPVFERLFGTPHGLDFAHLAATYGL 514
Query: 420 NHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSML 462
+ + ++ EL EAL + VIEV++ A H L
Sbjct: 515 EYHRPQSWDELGEALDQAWRRSGTTVIEVKTDRSDGAQLHQAL 557
|
Length = 566 |
| >gnl|CDD|232855 TIGR00173, menD, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase | Back alignment and domain information |
|---|
Score = 237 bits (606), Expect = 3e-69
Identities = 103/336 (30%), Positives = 157/336 (46%), Gaps = 43/336 (12%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYI 60
+ +T+D AV A +P GPVHIN PFREPL P L+ L W
Sbjct: 138 YLRSTVDRAVAQAQGAPPGPVHINVPFREPLYPDP------LLQPLQPW--LRSGVPTVS 189
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
+ ++ + ++ +GL++ G + ++ A+ LA + WP++AD
Sbjct: 190 T-GPPVLDPE----SLDDLWDRLRQAKRGLIIAGPLAGAEDAEALAALAEALGWPLLADP 244
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSGLR + L +DH D L + +++ +Q D++I+ G SKR+ Q +
Sbjct: 245 LSGLR----------GGPHPLVIDHYDLLLANAELREELQPDLVIRFGGPPVSKRLRQWL 294
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240
P Y +VD DP H T R++++ F + L + + ++ W +
Sbjct: 295 AR-QPAEYWVVDPDGGWLDPFHHATTRLEASPAAFAE-ALAGLLKNPAAAWLDRWLEAEA 352
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
A E ++ A+ L+E +A LS+ L SALFVGNSM IRD+D +
Sbjct: 353 -KAREALREVLAEEPLSELSLARALSQLLPEGSALFVGNSMPIRDVDTFASP-------- 403
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFA 336
P + IRV NRGASGIDG LSTA+G A
Sbjct: 404 ---------PDKPIRVFANRGASGIDGTLSTALGIA 430
|
MenD was thought until recently to act as SHCHC synthase, but has recently been shown to act instead as SEPHCHC synthase. Conversion of SEPHCHC into SHCHC and pyruvate may occur spontaneously but is catalyzed efficiently, at least in some organisms, by MenH (see TIGR03695). 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 430 |
| >gnl|CDD|238967 cd02009, TPP_SHCHC_synthase, Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 2e-60
Identities = 79/195 (40%), Positives = 110/195 (56%), Gaps = 21/195 (10%)
Query: 256 LTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIR 315
LTEP +A L L S LFVGNSM IRDLD++ + +R
Sbjct: 1 LTEPALARALPDHLPEGSQLFVGNSMPIRDLDLFA-----------------LPSDKTVR 43
Query: 316 VAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLV 375
V NRGASGIDG LSTA+G A+ +K + + GD+SFLHD NGL + KQ + + ++V
Sbjct: 44 VFANRGASGIDGTLSTALGIALATDKPTVLLTGDLSFLHDLNGLLLGKQ--EPLNLTIVV 101
Query: 376 INNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALS 435
INN+GG IFSLLP A + ++ F T + ++L A+GL + +V + ELE+AL
Sbjct: 102 INNNGGGIFSLLPQASFEDE--FERLFGTPQGLDFEHLAKAYGLEYRRVSSLDELEQALE 159
Query: 436 MSQHLGTDRVIEVES 450
+ VIEV++
Sbjct: 160 SALAQDGPHVIEVKT 174
|
SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity. Length = 175 |
| >gnl|CDD|239436 cd03320, OSBS, o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 7e-38
Identities = 80/331 (24%), Positives = 129/331 (38%), Gaps = 91/331 (27%)
Query: 525 REGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSF 584
R G +L L G VG+GE+APL L F
Sbjct: 24 RRGLLLRLEDLTGPVGWGEIAPLP------------LAF--------------------- 50
Query: 585 SSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSI 644
G+E A+ N A+ G ++ I
Sbjct: 51 ---------------------GIESALANLEALLVGF----------------TRPRNRI 73
Query: 645 KICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIEL 704
+ AL+ + + + A G+ +KLKV +D ++ +R+ + +L
Sbjct: 74 PVNALLPAGDAAALGEAKAA--YGGGYRTVKLKVGAT-SFEEDLARLRALREALPADAKL 130
Query: 705 RVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQK 764
R+DAN W+ +EAL F + ++YIE+P+ ++ +G+P+ALDE++ +
Sbjct: 131 RLDANGGWSLEEALAFLEALAAGRIEYIEQPLPPDDLAELRRLAAGVPIALDESL--RRL 188
Query: 765 DPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYI 824
D L G A+V+KP+++GG +A A+ G AVVS+A ES +GL A
Sbjct: 189 DDPLALAAAGALG--ALVLKPALLGGPRALLELAEEARARGIPAVVSSALESSIGLGALA 246
Query: 825 IFSSYLELQNAYLCKVMNRELCPPVAQGLGT 855
++ L P A GLGT
Sbjct: 247 HLAAALPP--------------LPAACGLGT 263
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 263 |
| >gnl|CDD|233641 TIGR01927, menC_gamma/gm+, o-succinylbenzoate synthase | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 5e-30
Identities = 92/374 (24%), Positives = 151/374 (40%), Gaps = 74/374 (19%)
Query: 503 YRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQL 561
YR Q+ P + + + REG I+ L ++G G+GE+APL E L +A +
Sbjct: 1 YRYQM--PFDAPVVTRHGLLARREGLIVRL-TDEGRTGWGEIAPLPGFGTETLAEALDFC 57
Query: 562 RFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGS 621
R L+ +T I L PSV G E A
Sbjct: 58 RALIEEITRGDIEAIDDQL--------------------PSVAFGFESA----------- 86
Query: 622 SFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR 681
L L +E+ S AL+ P + + + EGF K KV
Sbjct: 87 -----LIELES-GDELPPASNYY--VALL-PAGDPALL--LLRSAKAEGFRTFKWKV-GV 134
Query: 682 ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD------LQYIEEP 735
+ ++ ++ + + + + ELR+DAN + EA +F K D + ++EEP
Sbjct: 135 GELAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFL---KALDPNLRGRIAFLEEP 191
Query: 736 VQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAG 795
+ + +++ + E +G +ALDE++ + P + ++Y A+VIKP++IG
Sbjct: 192 LPDADEMSAFSEATGTAIALDESL---WELP-QLADEYGPGWRGALVIKPAIIGSPAKLR 247
Query: 796 LIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGT 855
+A+ A R G AV S+ FES + L A L ++ P A G T
Sbjct: 248 DLAQKAHRLGLQAVFSSVFESSIALGQL-----------ARLAAKLSP---DPAAVGFTT 293
Query: 856 YQWLKEDVTTDPIS 869
+D+ P S
Sbjct: 294 ALLRAQDLEAWPFS 307
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 307 |
| >gnl|CDD|227284 COG4948, COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 7e-27
Identities = 74/301 (24%), Positives = 121/301 (40%), Gaps = 31/301 (10%)
Query: 529 ILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLP-LLKGSFSSW 587
I+ + +DG VG+GE P + L LL I L + F
Sbjct: 33 IVEITTDDGIVGWGEAVPGGRARYGEEAEAVLLAPLLIGRDPFDIERIWQKLYRAGF--- 89
Query: 588 IWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEIS-KRSTSIKI 646
GI + +++A+ + G +Y L + K ++
Sbjct: 90 -ARRGGI-----TMAAISAVDIALWDLAGKALGVP----VYKL------LGGKVRDEVRA 133
Query: 647 CA-LIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELR 705
A A A LVE GF A+KLKV D +D E ++ +R+ VG + L
Sbjct: 134 YASGGGGEDPEEMAAEAARALVELGFKALKLKVGV-GDGDEDLERVRALREAVGDDVRLM 192
Query: 706 VDANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQ 763
VDAN WT +EA+ +++ L++IEEP+ + E + + + P+A E++
Sbjct: 193 VDANGGWTLEEAIRLARALEEYGLEWIEEPLPPDDLEGLRELRAATSTPIAAGESVYTR- 251
Query: 764 KDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAY 823
D +LE A + + + +GG A IA A+ G M V E + L+A
Sbjct: 252 WDFRRLLEAGA---VDIVQPDLARVGGITEALKIAALAEGFGVM--VGPHVEGPISLAAA 306
Query: 824 I 824
+
Sbjct: 307 L 307
|
Length = 372 |
| >gnl|CDD|239431 cd03315, MLE_like, Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 7e-26
Identities = 58/180 (32%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714
P EVA A +E GF KLKV R DP +D V+ +R+ VG ELRVDANR WT
Sbjct: 85 EPAEVAEEARRALEAGFRTFKLKVGR--DPARDVAVVAALREAVGDDAELRVDANRGWTP 142
Query: 715 QEALEFGFLIKDCDLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEK 772
++A+ ++D L Y+E+P+ + E + P+ DE+ P + +
Sbjct: 143 KQAIRALRALEDLGLDYVEQPLPADDLEGRAALARATDTPIMADESA----FTPHDAFRE 198
Query: 773 YAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLEL 832
A A+ IK + GG A + A+ G +V + ESGLG A ++ L
Sbjct: 199 LALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGLGTLANAHLAAALRA 258
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. Length = 265 |
| >gnl|CDD|235345 PRK05105, PRK05105, O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-23
Identities = 81/338 (23%), Positives = 142/338 (42%), Gaps = 79/338 (23%)
Query: 499 EYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL-EIHKENLLDA 557
LYR Q+ P + + R+G ++ L E G+GE+APL +E L +A
Sbjct: 3 SAQLYRYQI--PMDAGVPLRKQRLKTRDGLVVQL-REGEREGWGEIAPLPGFSQETLEEA 59
Query: 558 EEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAV 617
+E L L ++W+ + +PSV GL A
Sbjct: 60 QEALLAWL-------------------NNWLAGDCDDELSQ-YPSVAFGLSCA------- 92
Query: 618 KHGSSFLNILYPLTEIDEEISKRSTSIKICALI--DSNKSPVEVASIATTLVEEGFTAIK 675
L E+ + + + L D ++ +++A + V K
Sbjct: 93 ------------LAELAGTLPQAANYRTA-PLCYGDPDELILKLADMPGEKV------AK 133
Query: 676 LKVARRADPIKDAEVIQEVRKKVGHRI-------ELRVDANRNWTYQEALEFGFLIKDCD 728
+KV + ++D ++ + + +LR+DANR WT ++A +F +
Sbjct: 134 VKVGL-YEAVRDGMLV--------NLLLEAIPDLKLRLDANRGWTLEKAQQFAKYVPPDY 184
Query: 729 ---LQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKP 785
+ ++EEP + +D + +G+ +A DE++ ++P E A PG+ AIVIKP
Sbjct: 185 RHRIAFLEEPCKTPDDSRAFARATGIAIAWDESL----REPDFQFE--AEPGVRAIVIKP 238
Query: 786 SVIGGFEN-AGLIARWAQRHGKMAVVSAAFESGLGLSA 822
++ G E LI + A G AV+S++ ES LGL+
Sbjct: 239 TLTGSLEKCQELIEQ-AHALGLRAVISSSIESSLGLTQ 275
|
Length = 322 |
| >gnl|CDD|239435 cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 5e-23
Identities = 78/334 (23%), Positives = 128/334 (38%), Gaps = 46/334 (13%)
Query: 497 RMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLL 555
++ R+ L P T + SR E I+ + L DG GYGE AP + E +
Sbjct: 1 KISLRPERLPLKRPFTIAR----GSRTEAENVIVEIEL-DGITGYGEAAPTPRVTGETVE 55
Query: 556 DAEEQLRFLLHFMTGAKISYFLPLLKGSFSSW--IWSTLGIPACEIFPSVRCGLEMAILN 613
+ P L G + L + R +++A+ +
Sbjct: 56 SVLAA------------LKSVRPALIGGDPRLEKLLEALQE-LLPGNGAARAAVDIALWD 102
Query: 614 AIAVKHGSSF--LNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGF 671
A G L + T I S +P +A+ A + GF
Sbjct: 103 LEAKLLGLPLYQLWGGGAPRPL-------ETDYTI-----SIDTPEAMAAAAKKAAKRGF 150
Query: 672 TAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQY 731
+K+K+ D D E I+ +R+ LRVDAN+ WT +EA+E + + ++
Sbjct: 151 PLLKIKLGG--DLEDDIERIRAIREAAPD-ARLRVDANQGWTPEEAVELLRELAELGVEL 207
Query: 732 IEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPSVI 788
IE+PV +++ + ++S LP+ DE+ + + A G + IK
Sbjct: 208 IEQPVPAGDDDGLAYLRDKSPLPIMADESC----FSAAD-AARLAGGGAYDGINIKLMKT 262
Query: 789 GGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
GG A IA A+ G +V ES L ++A
Sbjct: 263 GGLTEALRIADLARAAGLKVMVGCMVESSLSIAA 296
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 316 |
| >gnl|CDD|224358 COG1441, MenC, O-succinylbenzoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 2e-21
Identities = 80/326 (24%), Positives = 133/326 (40%), Gaps = 60/326 (18%)
Query: 500 YSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL-EIHKENLLDAE 558
LYR Q+ P + I +R R+G + L E G+GE+APL +E L A+
Sbjct: 4 AQLYRYQI--PMDAGVILRDRRLKTRDGLYVCLR-EGEREGWGEIAPLPGFSQETLEQAQ 60
Query: 559 EQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVK 618
EQ L+ W P PSV GL A
Sbjct: 61 EQALAWLN---------------------NWLAGHDPLDPQMPSVAFGLSCA-------- 91
Query: 619 HGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKV 678
L L E + + +C P E+ + G K+KV
Sbjct: 92 --------LAELKGTLPEAANYRVA-PLC-----TGDPDELYLKLADM--PGEKVAKVKV 135
Query: 679 ARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIK---DCDLQYIEEP 735
+ ++D ++ + + + + LR+DANR WT +A +F + + ++EEP
Sbjct: 136 GLY-EAVRDGMIVNLLLEAIPD-LHLRLDANRAWTPLKAQQFAKYVNPDYRSRIAFLEEP 193
Query: 736 VQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAG 795
+ + + E+G+ +A DE++ ++ E A PG+ A+VIKP++ G +
Sbjct: 194 CKTRAESRAFARETGIAIAWDESL----READFAFE--AEPGVRAVVIKPTLTGSLQRVR 247
Query: 796 LIARWAQRHGKMAVVSAAFESGLGLS 821
+ + A G AV+S++ ES LGL+
Sbjct: 248 ELVQQAHALGLTAVISSSIESSLGLT 273
|
Length = 321 |
| >gnl|CDD|239432 cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 7e-18
Identities = 59/179 (32%), Positives = 88/179 (49%), Gaps = 21/179 (11%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIK----DAEVIQEVRKKVGHRIELRVDANR 710
SP E+A A V EGFTA+KLKV + D ++ VR+ VG ++L VDAN
Sbjct: 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANG 198
Query: 711 NWTYQEALEFGFLIKDCDLQYIEEPVQNE--EDIIKYCEESGLPVALDE---TIDKFQKD 765
W EA+ +++ DL + EEPV + E + + + + +P+A E T +F+
Sbjct: 199 RWDLAEAIRLARALEEYDLFWFEEPVPPDDLEGLARLRQATSVPIAAGENLYTRWEFRD- 257
Query: 766 PLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
+LE G V I+ P V +GG A IA A+ HG + V +GL+A
Sbjct: 258 ---LLEA----GAVDIIQ-PDVTKVGGITEAKKIAALAEAHG-VRVAPHGAGGPIGLAA 307
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). Length = 357 |
| >gnl|CDD|214914 smart00922, MR_MLE, Mandelate racemase / muconate lactonizing enzyme, C-terminal domain | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 1e-17
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 659 VASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEAL 718
+ + E GF A+K+KV P++D + VR+ VG +L VDAN WT +EA+
Sbjct: 5 AEAARRAVAEAGFRAVKVKVG--GGPLEDLARVAAVREAVGPDADLMVDANGAWTAEEAI 62
Query: 719 EFGFLIKDCDLQYIEEPVQNEED 741
+ + L++IEEPV ++
Sbjct: 63 RALEALDELGLEWIEEPVPPDDL 85
|
Mandelate racemase (MR) and muconate lactonizing enzyme (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyze mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures.. This entry represents the C-terminal region of these proteins. Length = 97 |
| >gnl|CDD|239433 cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 8e-17
Identities = 85/334 (25%), Positives = 122/334 (36%), Gaps = 85/334 (25%)
Query: 525 REGFILSLYLEDGSVGYGEVAPLEI---HKENLLDAEEQLRFLLHFMTGAKISYFLPLLK 581
RE I+ L E+G GYGEV E +E A L+ Y LPLL
Sbjct: 24 REFLIVELTDEEGITGYGEVVAFEGPFYTEETNATAWHILK-----------DYLLPLLL 72
Query: 582 G-------SFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEID 634
G S + G + GLEMA+ + A G S
Sbjct: 73 GREFSHPEEVSERLAPIKG------NNMAKAGLEMAVWDLYAKAQGQS------------ 114
Query: 635 EEISKRSTSIKICALIDSNKSPVEV-------ASIATTL------VEEGFTAIKLKVARR 681
+ + + + V + L +EEG+ IKLK+
Sbjct: 115 -----------LAQYLGGTRDSIPVGVSIGIQDDVEQLLKQIERYLEEGYKRIKLKIK-- 161
Query: 682 ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD---LQYIEEPVQN 738
P D E ++ VR++ I L DAN +T + L+K D L IE+P+
Sbjct: 162 --PGWDVEPLKAVRERFPD-IPLMADANSAYTLADIP----LLKRLDEYGLLMIEQPLA- 213
Query: 739 EEDIIKYCEESGL---PVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENA 794
+D+I + E L P+ LDE+I + K G I+ IKP +GG A
Sbjct: 214 ADDLIDHAELQKLLKTPICLDESIQSAED-----ARKAIELGACKIINIKPGRVGGLTEA 268
Query: 795 GLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSS 828
I Q HG ESG+G + + +S
Sbjct: 269 LKIHDLCQEHGIPVWCGGMLESGIGRAHNVALAS 302
|
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 354 |
| >gnl|CDD|235084 PRK02901, PRK02901, O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 2e-16
Identities = 62/201 (30%), Positives = 96/201 (47%), Gaps = 26/201 (12%)
Query: 670 GFTAIKLKVA-RRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALE-FGFLIKDC 727
G K+KVA D + VR +G +RVDAN W+ EA+ L D
Sbjct: 102 GCRTAKVKVAEPGQTLADDVARVNAVRDALGPDGRVRVDANGGWSVDEAVAAARALDADG 161
Query: 728 DLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSV 787
L+Y+E+P E++ + G+P+A DE+I + +DPL + A VA V+K +
Sbjct: 162 PLEYVEQPCATVEELAELRRRVGVPIAADESIRR-AEDPLRVAR--AGAADVA-VLKVAP 217
Query: 788 IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYL-ELQNAYLCKVMNRELC 846
+GG A A++ G VVS+A ++ +G++A + ++ L EL +A C
Sbjct: 218 LGGVRAA---LDIAEQIGLPVVVSSALDTSVGIAAGLALAAALPELDHA--C-------- 264
Query: 847 PPVAQGLGTYQWLKEDVTTDP 867
GL T +EDV DP
Sbjct: 265 -----GLATGGLFEEDV-ADP 279
|
Length = 327 |
| >gnl|CDD|235061 PRK02714, PRK02714, O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 3e-16
Identities = 79/350 (22%), Positives = 146/350 (41%), Gaps = 81/350 (23%)
Query: 525 REGFILSLYLEDGSVGYGEVAPL-EIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGS 583
REG IL L E G +G+GE+APL E L EE L F L G
Sbjct: 28 REGIILRLTDETGKIGWGEIAPLPWFGSETL---EEAL-------------AFCQQLPGE 71
Query: 584 FSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTS 643
+ IP + P+ + G E A+ N E +
Sbjct: 72 ITPEQ--IFSIP--DALPACQFGFESALEN------------------ESGSRSNVTLNP 109
Query: 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIE 703
+ AL+ + ++ ++ TL ++G+ K K+ ++ ++ +++ +++ +
Sbjct: 110 LSYSALLPAGEAALQQWQ---TLWQQGYRTFKWKIGVD-PLEQELKIFEQLLERLPAGAK 165
Query: 704 LRVDANRNWTYQEALEFGFLIKDCD------LQYIEEP--VQNEEDIIKYCEESGLPVAL 755
LR+DAN + +EA ++ CD +++IE+P +++++ ++ P+AL
Sbjct: 166 LRLDANGGLSLEEAKR---WLQLCDRRLSGKIEFIEQPLPPDQFDEMLQLSQDYQTPIAL 222
Query: 756 DETIDKFQKDPLNMLEKYAH---PGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSA 812
DE++ L L++ GI VIKP++ G + + ++ Q+H AV S+
Sbjct: 223 DESVAN-----LAQLQQCYQQGWRGIF--VIKPAIAG---SPSRLRQFCQQHPLDAVFSS 272
Query: 813 AFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKED 862
FE+ +G A + ++ EL P A G G W ++
Sbjct: 273 VFETAIGRKAALALAA--ELSR------------PDRALGFGVTHWFSDE 308
|
Length = 320 |
| >gnl|CDD|238188 cd00308, enolase_like, Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 9e-15
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 689 EVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNEEDIIKYC 746
E ++ VR+ G L VDAN WT +EA+ ++ L +IEEP + E
Sbjct: 82 ERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGLAWIEEPCAPDDLEGYAALR 141
Query: 747 EESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGK 806
+G+P+A DE++ LE + + IKP+ +GG + A A+ G
Sbjct: 142 RRTGIPIAADESVTTVDD----ALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGI 197
Query: 807 MAVVSAAFESGLGLSA 822
+V ES +G +A
Sbjct: 198 RVMVHGTLESSIGTAA 213
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. Length = 229 |
| >gnl|CDD|213667 TIGR01928, menC_lowGC/arch, o-succinylbenzoate synthase | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 6e-14
Identities = 65/307 (21%), Positives = 117/307 (38%), Gaps = 33/307 (10%)
Query: 525 REGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSF 584
R+ I+ L + G+ G+GEV + E + + H + +F P + F
Sbjct: 21 RDCLIIELIDDKGNAGFGEVVAFQTPWYT----HETIATVKHIIE----DFFEPNINKEF 72
Query: 585 SSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSI 644
+ + + + P + GLEMA+ + S L + +
Sbjct: 73 EHPSEALELVRSLKGTPMAKAGLEMALWDMYHKLPSFS----LAYGQGKLRDKAPAGAVS 128
Query: 645 KICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIEL 704
+ K ++ S L G+ IKLK+ P ++++ R + +I L
Sbjct: 129 GLANDEQMLK---QIES----LKATGYKRIKLKIT----PQIMHQLVKLRRLRF-PQIPL 176
Query: 705 RVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKY---CEESGLPVALDETIDK 761
+DAN ++ Q+ L L YIEEP + + DI + + P+ LDE+I
Sbjct: 177 VIDANESYDLQDFPRLKEL-DRYQLLYIEEPFKID-DISMLDELAKGTITPICLDESITS 234
Query: 762 FQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLS 821
D N++E + I IKP +GG + HG + E+G+ +
Sbjct: 235 LD-DARNLIELGN---VKVINIKPGRLGGLTEVQKAIDTCKEHGAKVWIGGMLETGISRA 290
Query: 822 AYIIFSS 828
+ +S
Sbjct: 291 FNVALAS 297
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 324 |
| >gnl|CDD|201648 pfam01188, MR_MLE, Mandelate racemase / muconate lactonizing enzyme, C-terminal domain | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 1e-13
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 690 VIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNEEDIIKYCE 747
+ VR+ VG ++LRVDAN WT +EA+ ++ L +IEEP+ + E + +
Sbjct: 1 RVAAVREAVGPDVDLRVDANGAWTPEEAIRLARALEPYGLLWIEEPLPPDDLEGLAELRR 60
Query: 748 ESGLPVALD 756
+ +P+A
Sbjct: 61 ATPIPIAAG 69
|
C-terminal domain is TIM barrel fold, dehydratase-like domain. Manganese is associated with this domain. Length = 69 |
| >gnl|CDD|239434 cd03318, MLE, Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 2e-12
Identities = 65/301 (21%), Positives = 116/301 (38%), Gaps = 32/301 (10%)
Query: 529 ILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWI 588
++ L DG VG GE E + Y PLL G ++ I
Sbjct: 32 LVRLTTSDGVVGIGEATTPGGPAWGGESPETIKAIIDR--------YLAPLLIGRDATNI 83
Query: 589 WSTL----GIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSI 644
+ + A +F + +EMA+L+A + G +L + S+
Sbjct: 84 GAAMALLDRAVAGNLF--AKAAIEMALLDAQGRRLGLPVSELLG---------GRVRDSL 132
Query: 645 KICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIEL 704
+ + S + ++A L KLK+ R P D ++ + K +G R +
Sbjct: 133 PVAWTLASGDTERDIAEAEEMLEAGRHRRFKLKMGAR-PPADDLAHVEAIAKALGDRASV 191
Query: 705 RVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKF 762
RVD N+ W A+ ++ ++ IE+PV +N + + + + +P+ DE++
Sbjct: 192 RVDVNQAWDESTAIRALPRLEAAGVELIEQPVPRENLDGLARLRSRNRVPIMADESV--- 248
Query: 763 QKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLS 821
P + E A G + +K + GG A +A A+ G ES +G +
Sbjct: 249 -SGPADAFE-LARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESSIGTA 306
Query: 822 A 822
A
Sbjct: 307 A 307
|
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. Length = 365 |
| >gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 5e-11
Identities = 91/475 (19%), Positives = 160/475 (33%), Gaps = 89/475 (18%)
Query: 5 TLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQH 64
+ A A S GPV ++ P D+ + E +
Sbjct: 138 VVARAFRIALSGRPGPVVVDLP-------------------KDVLAAEAEEPGPEPAILP 178
Query: 65 SHACKSYTYCQMAEVLELVQGVNKGLLLVGA-VHNEDEIWAVLHLARHIRWPVVADILSG 123
+ + + EL+ + ++L G V + LA + PVV L G
Sbjct: 179 PYRPAPPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTT-LMG 237
Query: 124 LRL----RKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQM 179
L L + + L E+ D+++ +G+R R++
Sbjct: 238 KGAVPEDHPLSLGMLG-----MHGTKAANEALEEA-------DLLLAVGAR-FDDRVTGY 284
Query: 180 IEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239
P I +D P ++ V I ++ LL+ ++ + W L
Sbjct: 285 SGFAPPAAIIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLE-ELKPERAAWLEELLEAR 343
Query: 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALF---VGNSM--AIRDLDMYGRNWT 294
++ D + +V L R L + A+ VG A R D Y
Sbjct: 344 AAYRDLALEELADDGIKPQ-YVIKVL-RELLPDDAIVVTDVGQHQMWAARYFDFYR---- 397
Query: 295 TCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFL 353
P +++ +G G G GL AIG + ++ V+ + GD F+
Sbjct: 398 ---------------PRRFL-TSGGLGTMGF-GL-PAAIGAKLAAPDRKVVAIAGDGGFM 439
Query: 354 HDTNGLAILKQRMKRKPILMLVINNHG-GAIFSLLPIADRTEPRIL-DQYFYTTH--NIS 409
+ L + P+ ++V+NN G G + R + + T N
Sbjct: 440 MNGQELETAVR--YGLPVKIVVLNNGGYGMV--------RQWQELFYGGRYSGTDLGNPD 489
Query: 410 IQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDR--VIEVESCIDANATFHSML 462
L A+G ++V+T ELEEAL + L +D +I+V +D M+
Sbjct: 490 FVKLAEAYGAKGIRVETPEELEEAL--EEALASDGPVLIDVV--VDPEEAVPPMV 540
|
Length = 550 |
| >gnl|CDD|239445 cd03329, MR_like_4, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 4e-10
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 4/109 (3%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714
SP A A G+ AIKL +D + VR+ VG + L D ++
Sbjct: 143 SPEAYADFAEECKALGYRAIKLHPWGPGVVRRDLKACLAVREAVGPDMRLMHDGAHWYSR 202
Query: 715 QEALEFGFLIKDCDLQYIEEPVQNEEDIIKY---CEESGLPVALDETID 760
+AL G +++ + E+P++ E I Y E+ +P+ E
Sbjct: 203 ADALRLGRALEELGFFWYEDPLR-EASISSYRWLAEKLDIPILGTEHSR 250
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. Length = 368 |
| >gnl|CDD|239437 cd03321, mandelate_racemase, Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 6e-10
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 20/135 (14%)
Query: 606 GLEMAILNAIAVKHGSSFLNIL----YPLTEIDEEISKRSTSIKICALIDSNKSPVEVAS 661
G++MA +A+A HG +L P+ D S + L
Sbjct: 103 GIDMAAWDALAKVHGLPLAKLLGGNPRPVQAYD------SHGLDGAKL---------ATE 147
Query: 662 IATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFG 721
A T EEGF A+K K+ +D V++ +R+ VG + L VD N++ T EA+E G
Sbjct: 148 RAVTAAEEGFHAVKTKIGY-PTADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERG 206
Query: 722 FLIKDCDLQYIEEPV 736
+ L +IEEP
Sbjct: 207 QALDQEGLTWIEEPT 221
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 355 |
| >gnl|CDD|234315 TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 4e-09
Identities = 20/40 (50%), Positives = 31/40 (77%)
Query: 940 ILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSK 979
+L+FLHGFLG+G +W +++ + RC++IDLPGHG S+
Sbjct: 4 VLVFLHGFLGSGADWQALIELLGPHFRCLAIDLPGHGSSQ 43
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 252 |
| >gnl|CDD|236855 PRK11126, PRK11126, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKM 980
L+FLHG LG+G++W P+ +A+ + IDLPGHGGS
Sbjct: 5 LVFLHGLLGSGQDWQPVGEALPDY-PRLYIDLPGHGGSAA 43
|
Length = 242 |
| >gnl|CDD|239444 cd03328, MR_like_3, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 667 VEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD 726
V +G +K+K+ R DP +D + + R+ +G EL VDAN ++ ++AL D
Sbjct: 150 VAQGIPRVKMKIGR--DPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFAD 207
Query: 727 CDLQYIEEPVQNEE 740
+ + EEPV +++
Sbjct: 208 EGVTWFEEPVSSDD 221
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. Length = 352 |
| >gnl|CDD|162905 TIGR02534, mucon_cyclo, muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 62/287 (21%), Positives = 120/287 (41%), Gaps = 38/287 (13%)
Query: 529 ILSLYLEDGSVGYGE-VAP--LEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFS 585
++ + EDG +GYGE L E+ E ++ + +Y P+L G +
Sbjct: 31 LVRIRTEDGVIGYGEGTTIGGLWWGGESP----ETIKANID-------TYLAPVLVGRDA 79
Query: 586 SWIWSTL----GIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEI-DEEISKR 640
+ I + + + A F + ++ A+ +A A + L + P++E+ +
Sbjct: 80 TEIAAIMADLEKVVAGNRF--AKAAVDTALHDAQARR-----LGV--PVSELLGGRVRD- 129
Query: 641 STSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGH 700
S+ + + S + ++A + E+ + KLK+ R DP D + + K +G
Sbjct: 130 --SVDVTWTLASGDTDRDIAEAEERIEEKRHRSFKLKIGAR-DPADDVAHVVAIAKALGD 186
Query: 701 RIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNEEDIIKYCEESGLPVALDET 758
R +RVD N W + AL + + D ++ IE+P +N E + + +P+ DE+
Sbjct: 187 RASVRVDVNAAWDERTALHYLPQLADAGVELIEQPTPAENREALARLTRRFNVPIMADES 246
Query: 759 IDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHG 805
+ P + L +K + GG + IA A+ G
Sbjct: 247 V----TGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAG 289
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). Length = 368 |
| >gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 6e-07
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 18/114 (15%)
Query: 329 LSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHG-GAIFSL 386
L AIG + ++ V+ + GD F + LA + PI ++V+NN G G
Sbjct: 34 LPAAIGAKLARPDRPVVAIAGDGGFQMNLQELATAVRY--NLPITVVVLNNGGYGMT--- 88
Query: 387 LPIADRTEPRILDQYFYTT------HNISIQNLCLAHGLNHVQVKTKVELEEAL 434
R + Y+ + L A+G +V++ ELEEAL
Sbjct: 89 -----RGQQTPFGGGRYSGPDGKDLPPVDFAKLAEAYGAKGARVESPEELEEAL 137
|
Length = 151 |
| >gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 15/160 (9%)
Query: 297 THTVADIMLNSEFPHQ-WIRVAGNR-GASGIDGLLSTAIGFAVGC-----NKHVLCVVGD 349
V D ++ + ++ G R S G + + A+G ++ V+C+ GD
Sbjct: 14 AIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALAAPDRPVVCIAGD 73
Query: 350 ISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT-HNI 408
F+ LA + P++++V NN G I E + T N
Sbjct: 74 GGFMMTGQELATAVRY--GLPVIVVVFNNGGYGT-----IRMHQEAFYGGRVSGTDLSNP 126
Query: 409 SIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEV 448
L A+G V+V+ +LE AL+ + G +IEV
Sbjct: 127 DFAALAEAYGAKGVRVEDPEDLEAALAEALAAGGPALIEV 166
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. Length = 168 |
| >gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++ LHG G+ E W P+ +A++ R ++ DLPGHG S
Sbjct: 1 VVLLHGAGGSAESWRPLAEALAAGYRVLAPDLPGHGDS 38
|
This family contains alpha/beta hydrolase enzymes of diverse specificity. Length = 187 |
| >gnl|CDD|239440 cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 6e-06
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 667 VEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD 726
+ +GFT KLKV AD D + R+ +G +L +DAN+ W EA+E+ + +
Sbjct: 208 LAQGFTHFKLKVG--ADLEDDIRRCRLAREVIGPDNKLMIDANQRWDVPEAIEWVKQLAE 265
Query: 727 CDLQYIEEP-----VQNEEDIIKYCEESGLPVALDE 757
+IEEP + I K + VA E
Sbjct: 266 FKPWWIEEPTSPDDILGHAAIRKALAPLPIGVATGE 301
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 415 |
| >gnl|CDD|239439 cd03323, D-glucarate_dehydratase, D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 655 SPVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKV-GHRIELRVDANRNW 712
+P V +A ++ GF + KLK ++ E ++ + + G R LR+D N W
Sbjct: 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLP-GEEEIEAVKALAEAFPGAR--LRLDPNGAW 224
Query: 713 TYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVA 754
+ + A+ ++ L Y+E+P E + ++ +GLP+A
Sbjct: 225 SLETAIRLAKELEG-VLAYLEDPCGGREGMAEFRRATGLPLA 265
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. Length = 395 |
| >gnl|CDD|184455 PRK14017, PRK14017, galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 7e-05
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 27/120 (22%)
Query: 656 PVEVASIATTLVEEGFTAIKLKVARRADPIK-----DAEV--IQEVRKKVGHRIELRVD- 707
P +VA A VE GFTA+K+ I DA V + VR+ VG I + VD
Sbjct: 125 PADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDF 184
Query: 708 --------ANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNEEDIIKYCEESGLPVALDE 757
A + LE +IEEPV +N E + + ++ +P+A E
Sbjct: 185 HGRVHKPMAKV---LAKELE------PYRPMFIEEPVLPENAEALPEIAAQTSIPIATGE 235
|
Length = 382 |
| >gnl|CDD|239443 cd03327, MR_like_2, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 24/98 (24%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVAR-RADPI----KDAEVIQEVRKKVGHRIELRVDAN 709
E+ A ++EG+ +K++ +D K+ E+++ +R+ VG+ ++L +D
Sbjct: 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAVGYDVDLMLDCY 179
Query: 710 RNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCE 747
+W A++ ++ +L++IEEP+ +DI Y E
Sbjct: 180 MSWNLNYAIKMARALEKYELRWIEEPLI-PDDIEGYAE 216
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. Length = 341 |
| >gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 10/148 (6%)
Query: 305 LNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILK 363
L P + RG G+ L A+G A+ ++ V+ ++GD SF++ T A+
Sbjct: 35 LPLTRPGSYF---TLRGG-GLGWGLPAAVGAALANPDRKVVAIIGDGSFMY-TIQ-ALWT 88
Query: 364 QRMKRKPILMLVINNHGGAI---FSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
P+ ++++NN G F + D I + A G+
Sbjct: 89 AARYGLPVTVVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVE 148
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEV 448
+V+T EL+EAL + G +IEV
Sbjct: 149 AERVETPEELDEALREALAEGGPALIEV 176
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. Length = 178 |
| >gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++ +HGF G W+ A++ I++DLPGHG S
Sbjct: 134 VVLIHGFGGDLNNWLFNHAALAAGRPVIALDLPGHGAS 171
|
Length = 371 |
| >gnl|CDD|238973 cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 6e-04
Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 41/161 (25%)
Query: 310 PHQWIRVAGNRGASGIDGL------LSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAIL 362
P W+ SG GL L AIG V +K V+C+ GD SF + LA
Sbjct: 40 PRSWL-------TSG--GLGTMGFGLPAAIGAKVARPDKTVICIDGDGSFQMNIQELATA 90
Query: 363 KQRMKRKPILMLVINNHG-GAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCL------ 415
Q P+ ++++NN G + R + FY
Sbjct: 91 AQ--YNLPVKIVILNNGSLGMV------------RQWQELFYEGRYSHTTLDSNPDFVKL 136
Query: 416 --AHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454
A+G+ ++V+ ELE AL + L +D + ++ +D
Sbjct: 137 AEAYGIKGLRVEKPEELEAAL--KEALASDGPVLLDVLVDP 175
|
AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. Length = 186 |
| >gnl|CDD|132100 TIGR03056, bchO_mg_che_rel, putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 940 ILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSK 979
+LL LHG + W +M ++ S R ++ DLPGHG ++
Sbjct: 30 LLLLLHGTGASTHSWRDLMPPLARSFRVVAPDLPGHGFTR 69
|
Members of this family belong to the alpha/beta fold family hydrolases (pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity [Energy metabolism, Photosynthesis]. Length = 278 |
| >gnl|CDD|132920 cd07037, TPP_PYR_MenD, Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1- carboxylate synthase (MenD) and related proteins | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.002
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPF 27
+L + AV A S+P GPVH+N PF
Sbjct: 137 LLRLANRAVLEALSAPPGPVHLNLPF 162
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1- carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Escherichia coli MenD (EcMenD) is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of different subunits. EcMenD catalyzes a Stetter-like conjugate addition of alpha-ketoglutarate to isochorismate, leading to the formation of SEPHCHC and carbon dioxide, this addition is the first committed step in the biosynthesis of vitamin K2 (menaquinone). Length = 162 |
| >gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.4 bits (93), Expect = 0.003
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA---RCISIDLPGHGGS 978
L+ LHGF G+ W P+ K + A R I+ DL GHG S
Sbjct: 24 LVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRGHGRS 64
|
Length = 282 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 983 | |||
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 100.0 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 100.0 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 100.0 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 100.0 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| TIGR02534 | 368 | mucon_cyclo muconate and chloromuconate cycloisome | 100.0 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| cd03318 | 365 | MLE Muconate Lactonizing Enzyme (MLE), an homoocta | 100.0 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 100.0 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 100.0 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 100.0 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 100.0 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 100.0 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PLN02470 | 585 | acetolactate synthase | 100.0 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 100.0 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 100.0 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 100.0 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 100.0 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 100.0 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 100.0 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 100.0 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 100.0 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 100.0 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 100.0 | |
| cd03323 | 395 | D-glucarate_dehydratase D-Glucarate dehydratase (G | 100.0 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 100.0 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 100.0 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 100.0 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 100.0 | |
| cd03328 | 352 | MR_like_3 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 100.0 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 100.0 | |
| cd03321 | 355 | mandelate_racemase Mandelate racemase (MR) catalyz | 100.0 | |
| cd03317 | 354 | NAAAR N-acylamino acid racemase (NAAAR), an octame | 100.0 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 100.0 | |
| PRK14017 | 382 | galactonate dehydratase; Provisional | 100.0 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 100.0 | |
| PRK15072 | 404 | bifunctional D-altronate/D-mannonate dehydratase; | 100.0 | |
| PRK07449 | 568 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 | 100.0 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 100.0 | |
| PLN02573 | 578 | pyruvate decarboxylase | 100.0 | |
| TIGR03393 | 539 | indolpyr_decarb indolepyruvate decarboxylase, Erwi | 100.0 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 100.0 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 100.0 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 100.0 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 100.0 | |
| cd03325 | 352 | D-galactonate_dehydratase D-galactonate dehydratas | 100.0 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 100.0 | |
| cd03326 | 385 | MR_like_1 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 100.0 | |
| KOG1185 | 571 | consensus Thiamine pyrophosphate-requiring enzyme | 100.0 | |
| cd03324 | 415 | rTSbeta_L-fuconate_dehydratase Human rTS beta is e | 100.0 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 100.0 | |
| KOG4166 | 675 | consensus Thiamine pyrophosphate-requiring enzyme | 100.0 | |
| cd03322 | 361 | rpsA The starvation sensing protein RpsA from E.co | 100.0 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 100.0 | |
| COG4948 | 372 | L-alanine-DL-glutamate epimerase and related enzym | 100.0 | |
| cd03329 | 368 | MR_like_4 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| cd03327 | 341 | MR_like_2 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 100.0 | |
| TIGR03247 | 441 | glucar-dehydr glucarate dehydratase. Glucarate deh | 100.0 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 100.0 | |
| TIGR01928 | 324 | menC_lowGC/arch o-succinylbenzoic acid (OSB) synth | 100.0 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 100.0 | |
| PRK15129 | 321 | L-Ala-D/L-Glu epimerase; Provisional | 100.0 | |
| PRK15440 | 394 | L-rhamnonate dehydratase; Provisional | 100.0 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 100.0 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 100.0 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 100.0 | |
| PRK07586 | 514 | hypothetical protein; Validated | 100.0 | |
| cd03320 | 263 | OSBS o-Succinylbenzoate synthase (OSBS) catalyzes | 100.0 | |
| TIGR01927 | 307 | menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthe | 100.0 | |
| PRK02714 | 320 | O-succinylbenzoate synthase; Provisional | 100.0 | |
| COG3961 | 557 | Pyruvate decarboxylase and related thiamine pyroph | 100.0 | |
| PRK05105 | 322 | O-succinylbenzoate synthase; Provisional | 100.0 | |
| COG1165 | 566 | MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car | 100.0 | |
| COG3962 | 617 | Acetolactate synthase [Amino acid transport and me | 100.0 | |
| TIGR01502 | 408 | B_methylAsp_ase methylaspartate ammonia-lyase. Thi | 100.0 | |
| cd03314 | 369 | MAL Methylaspartate ammonia lyase (3-methylasparta | 100.0 | |
| COG3960 | 592 | Glyoxylate carboligase [General function predictio | 100.0 | |
| cd00308 | 229 | enolase_like Enolase-superfamily, characterized by | 100.0 | |
| KOG1184 | 561 | consensus Thiamine pyrophosphate-requiring enzyme | 100.0 | |
| PRK02901 | 327 | O-succinylbenzoate synthase; Provisional | 100.0 | |
| PRK00077 | 425 | eno enolase; Provisional | 100.0 | |
| TIGR00173 | 432 | menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex | 100.0 | |
| TIGR01060 | 425 | eno phosphopyruvate hydratase. Alternate name: eno | 100.0 | |
| cd03313 | 408 | enolase Enolase: Enolases are homodimeric enzymes | 100.0 | |
| cd02013 | 196 | TPP_Xsc_like Thiamine pyrophosphate (TPP) family, | 100.0 | |
| cd02006 | 202 | TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s | 99.98 | |
| cd02009 | 175 | TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa | 99.97 | |
| cd02010 | 177 | TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto | 99.97 | |
| cd02003 | 205 | TPP_IolD Thiamine pyrophosphate (TPP) family, IolD | 99.97 | |
| cd02015 | 186 | TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet | 99.97 | |
| cd02005 | 183 | TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, | 99.97 | |
| cd02004 | 172 | TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam | 99.96 | |
| cd02014 | 178 | TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv | 99.96 | |
| PLN00191 | 457 | enolase | 99.96 | |
| PRK06163 | 202 | hypothetical protein; Provisional | 99.96 | |
| cd02002 | 178 | TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC | 99.95 | |
| cd02001 | 157 | TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil | 99.95 | |
| TIGR03846 | 181 | sulfopy_beta sulfopyruvate decarboxylase, beta sub | 99.94 | |
| COG1441 | 321 | MenC O-succinylbenzoate synthase [Coenzyme metabol | 99.94 | |
| cd03371 | 188 | TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp | 99.94 | |
| PF02775 | 153 | TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter | 99.94 | |
| PTZ00081 | 439 | enolase; Provisional | 99.93 | |
| cd02008 | 178 | TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, | 99.93 | |
| cd03375 | 193 | TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o | 99.92 | |
| cd03372 | 179 | TPP_ComE Thiamine pyrophosphate (TPP) family, ComE | 99.92 | |
| cd02018 | 237 | TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru | 99.92 | |
| cd03376 | 235 | TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam | 99.92 | |
| cd00568 | 168 | TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa | 99.91 | |
| PRK09628 | 277 | oorB 2-oxoglutarate-acceptor oxidoreductase subuni | 99.9 | |
| PRK05778 | 301 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.88 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 99.88 | |
| PRK11867 | 286 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.87 | |
| PRK11869 | 280 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.86 | |
| PRK11866 | 279 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.85 | |
| TIGR02177 | 287 | PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta | 99.84 | |
| PF00205 | 137 | TPP_enzyme_M: Thiamine pyrophosphate enzyme, centr | 99.84 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 99.83 | |
| PF02746 | 117 | MR_MLE_N: Mandelate racemase / muconate lactonizin | 99.75 | |
| TIGR03181 | 341 | PDH_E1_alph_x pyruvate dehydrogenase E1 component, | 99.68 | |
| TIGR03182 | 315 | PDH_E1_alph_y pyruvate dehydrogenase E1 component, | 99.65 | |
| COG0148 | 423 | Eno Enolase [Carbohydrate transport and metabolism | 99.65 | |
| CHL00149 | 341 | odpA pyruvate dehydrogenase E1 component alpha sub | 99.63 | |
| cd02012 | 255 | TPP_TK Thiamine pyrophosphate (TPP) family, Transk | 99.6 | |
| cd02000 | 293 | TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) | 99.6 | |
| PRK08350 | 341 | hypothetical protein; Provisional | 99.6 | |
| PF01188 | 67 | MR_MLE: Mandelate racemase / muconate lactonizing | 99.59 | |
| PF13378 | 111 | MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FC | 99.57 | |
| PLN02374 | 433 | pyruvate dehydrogenase (acetyl-transferring) | 99.49 | |
| PRK05899 | 624 | transketolase; Reviewed | 99.44 | |
| PTZ00378 | 518 | hypothetical protein; Provisional | 99.26 | |
| cd02007 | 195 | TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s | 99.24 | |
| PRK11865 | 299 | pyruvate ferredoxin oxidoreductase subunit beta; P | 99.24 | |
| PRK05444 | 580 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 99.15 | |
| PRK11864 | 300 | 2-ketoisovalerate ferredoxin oxidoreductase subuni | 99.15 | |
| PRK00945 | 171 | acetyl-CoA decarbonylase/synthase complex subunit | 99.12 | |
| KOG2670 | 433 | consensus Enolase [Carbohydrate transport and meta | 99.1 | |
| TIGR00315 | 162 | cdhB CO dehydrogenase/acetyl-CoA synthase complex, | 99.08 | |
| COG3799 | 410 | Mal Methylaspartate ammonia-lyase [Amino acid tran | 98.92 | |
| KOG4178 | 322 | consensus Soluble epoxide hydrolase [Lipid transpo | 98.79 | |
| COG1071 | 358 | AcoA Pyruvate/2-oxoglutarate dehydrogenase complex | 98.77 | |
| PF00676 | 300 | E1_dh: Dehydrogenase E1 component; InterPro: IPR00 | 98.75 | |
| PF07476 | 248 | MAAL_C: Methylaspartate ammonia-lyase C-terminus; | 98.74 | |
| PRK12571 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 98.74 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 98.69 | |
| COG1013 | 294 | PorB Pyruvate:ferredoxin oxidoreductase and relate | 98.69 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 98.66 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 98.65 | |
| PLN02269 | 362 | Pyruvate dehydrogenase E1 component subunit alpha | 98.65 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 98.64 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 98.6 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 98.56 | |
| PLN02790 | 654 | transketolase | 98.55 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 98.54 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 98.54 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 98.54 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 98.43 | |
| PTZ00089 | 661 | transketolase; Provisional | 98.41 | |
| PF13292 | 270 | DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn | 98.39 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 98.37 | |
| PF00113 | 295 | Enolase_C: Enolase, C-terminal TIM barrel domain; | 98.35 | |
| PRK12753 | 663 | transketolase; Reviewed | 98.34 | |
| PRK12754 | 663 | transketolase; Reviewed | 98.33 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 98.33 | |
| PF00456 | 332 | Transketolase_N: Transketolase, thiamine diphospha | 98.33 | |
| TIGR00232 | 653 | tktlase_bact transketolase, bacterial and yeast. T | 98.32 | |
| PLN02578 | 354 | hydrolase | 98.32 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 98.27 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 98.27 | |
| KOG4409 | 365 | consensus Predicted hydrolase/acyltransferase (alp | 98.26 | |
| KOG0225 | 394 | consensus Pyruvate dehydrogenase E1, alpha subunit | 98.24 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 98.2 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 98.19 | |
| cd03377 | 365 | TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), | 98.18 | |
| cd02016 | 265 | TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami | 98.16 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 98.12 | |
| TIGR00204 | 617 | dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s | 98.11 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 98.11 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 98.1 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 98.08 | |
| COG4231 | 640 | Indolepyruvate ferredoxin oxidoreductase, alpha an | 98.06 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 98.01 | |
| PLN02234 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase | 97.99 | |
| PLN02225 | 701 | 1-deoxy-D-xylulose-5-phosphate synthase | 97.97 | |
| COG3959 | 243 | Transketolase, N-terminal subunit [Carbohydrate tr | 97.93 | |
| cd02017 | 386 | TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam | 97.92 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 97.89 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 97.87 | |
| COG0021 | 663 | TktA Transketolase [Carbohydrate transport and met | 97.87 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 97.87 | |
| KOG2564 | 343 | consensus Predicted acetyltransferases and hydrola | 97.86 | |
| cd02011 | 227 | TPP_PK Thiamine pyrophosphate (TPP) family, Phosph | 97.86 | |
| COG1154 | 627 | Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m | 97.82 | |
| PLN02582 | 677 | 1-deoxy-D-xylulose-5-phosphate synthase | 97.81 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 97.8 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 97.78 | |
| TIGR00239 | 929 | 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon | 97.78 | |
| KOG1454 | 326 | consensus Predicted hydrolase/acyltransferase (alp | 97.74 | |
| PRK09404 | 924 | sucA 2-oxoglutarate dehydrogenase E1 component; Re | 97.7 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 97.69 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 97.62 | |
| PRK07581 | 339 | hypothetical protein; Validated | 97.6 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 97.59 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 97.58 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 97.53 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 97.5 | |
| PRK09193 | 1165 | indolepyruvate ferredoxin oxidoreductase; Validate | 97.49 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 97.48 | |
| TIGR03186 | 889 | AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S | 97.46 | |
| PF03952 | 132 | Enolase_N: Enolase, N-terminal domain; InterPro: I | 97.44 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 97.42 | |
| PRK05261 | 785 | putative phosphoketolase; Provisional | 97.4 | |
| KOG0523 | 632 | consensus Transketolase [Carbohydrate transport an | 97.39 | |
| PRK13030 | 1159 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 97.38 | |
| KOG2565 | 469 | consensus Predicted hydrolases or acyltransferases | 97.28 | |
| KOG1182 | 432 | consensus Branched chain alpha-keto acid dehydroge | 97.28 | |
| COG1880 | 170 | CdhB CO dehydrogenase/acetyl-CoA synthase epsilon | 97.25 | |
| PRK13012 | 896 | 2-oxoacid dehydrogenase subunit E1; Provisional | 97.15 | |
| TIGR00759 | 885 | aceE pyruvate dehydrogenase E1 component, homodime | 97.15 | |
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 97.11 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 97.1 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 97.04 | |
| PLN02511 | 388 | hydrolase | 96.95 | |
| PRK13029 | 1186 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 96.94 | |
| PRK10566 | 249 | esterase; Provisional | 96.89 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 96.87 | |
| PRK09405 | 891 | aceE pyruvate dehydrogenase subunit E1; Reviewed | 96.83 | |
| TIGR02176 | 1165 | pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid | 96.67 | |
| PF05034 | 159 | MAAL_N: Methylaspartate ammonia-lyase N-terminus; | 96.58 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 96.56 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 96.47 | |
| KOG2382 | 315 | consensus Predicted alpha/beta hydrolase [General | 96.42 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 96.33 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 96.13 | |
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 96.06 | |
| PF02776 | 172 | TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter | 96.03 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 95.97 | |
| cd07035 | 155 | TPP_PYR_POX_like Pyrimidine (PYR) binding domain o | 95.89 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 95.86 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 95.85 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 95.7 | |
| PLN00021 | 313 | chlorophyllase | 95.64 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 95.64 | |
| KOG2984 | 277 | consensus Predicted hydrolase [General function pr | 95.54 | |
| PLN02872 | 395 | triacylglycerol lipase | 95.53 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 95.16 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 95.11 | |
| PF02552 | 167 | CO_dh: CO dehydrogenase beta subunit/acetyl-CoA sy | 95.08 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 94.93 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 94.68 | |
| cd07039 | 164 | TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | 94.63 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 94.62 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 94.59 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 94.43 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 94.35 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 94.26 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 94.22 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 93.94 | |
| PRK00366 | 360 | ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s | 93.87 | |
| TIGR00612 | 346 | ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho | 93.73 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 93.7 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 93.59 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 93.55 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 93.3 | |
| COG1029 | 429 | FwdB Formylmethanofuran dehydrogenase subunit B [E | 93.28 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 93.17 | |
| PRK13761 | 248 | hypothetical protein; Provisional | 93.13 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 93.1 | |
| cd06586 | 154 | TPP_enzyme_PYR Pyrimidine (PYR) binding domain of | 93.09 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 93.07 | |
| COG0821 | 361 | gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat | 93.02 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 92.87 | |
| PF06441 | 112 | EHN: Epoxide hydrolase N terminus; InterPro: IPR01 | 92.69 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 92.33 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 91.91 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 91.91 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 91.85 | |
| cd07038 | 162 | TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom | 91.78 | |
| PRK11916 | 312 | electron transfer flavoprotein subunit YdiR; Provi | 91.66 | |
| TIGR03845 | 157 | sulfopyru_alph sulfopyruvate decarboxylase, alpha | 91.56 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 91.44 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 91.28 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 91.25 | |
| COG1701 | 256 | Uncharacterized protein conserved in archaea [Func | 91.12 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 91.01 | |
| cd07037 | 162 | TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- | 90.93 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 90.76 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 90.64 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 90.41 | |
| PLN00022 | 356 | electron transfer flavoprotein subunit alpha; Prov | 90.33 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 90.06 | |
| cd01408 | 235 | SIRT1 SIRT1: Eukaryotic group (class1) which inclu | 90.02 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 89.97 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 89.96 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 89.6 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 89.53 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 89.49 | |
| PF09364 | 379 | XFP_N: XFP N-terminal domain; InterPro: IPR018970 | 89.4 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 89.35 | |
| PRK00481 | 242 | NAD-dependent deacetylase; Provisional | 89.32 | |
| PRK14138 | 244 | NAD-dependent deacetylase; Provisional | 89.21 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 88.97 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 88.6 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 88.55 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 88.52 | |
| PRK07586 | 514 | hypothetical protein; Validated | 88.5 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 88.48 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 88.23 | |
| cd01412 | 224 | SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaea | 88.12 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 88.0 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 87.98 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 87.94 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 87.92 | |
| PRK03363 | 313 | fixB putative electron transfer flavoprotein FixB; | 87.91 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 87.66 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 87.56 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 87.35 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 87.28 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 87.22 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 87.09 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 87.0 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 86.94 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 86.77 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 86.74 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 86.7 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 86.57 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 86.41 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 86.39 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 86.29 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 86.25 | |
| PF04083 | 63 | Abhydro_lipase: Partial alpha/beta-hydrolase lipas | 86.22 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 86.14 | |
| PRK05333 | 285 | NAD-dependent deacetylase; Provisional | 86.09 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 86.06 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 86.03 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 86.02 | |
| COG2025 | 313 | FixB Electron transfer flavoprotein, alpha subunit | 85.76 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 85.7 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 85.59 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 85.52 | |
| cd07034 | 160 | TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi | 85.38 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 85.32 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 85.3 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 85.17 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 85.17 | |
| cd07033 | 156 | TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai | 84.87 | |
| PRK09444 | 462 | pntB pyridine nucleotide transhydrogenase; Provisi | 84.83 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 84.82 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 84.74 | |
| PTZ00408 | 242 | NAD-dependent deacetylase; Provisional | 84.1 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 83.75 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 83.58 | |
| PLN02470 | 585 | acetolactate synthase | 83.57 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 83.53 | |
| TIGR00173 | 432 | menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex | 83.47 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 83.41 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 83.41 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 83.21 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 83.16 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 83.15 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 82.91 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 82.82 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 82.58 | |
| cd02761 | 415 | MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the | 82.51 | |
| KOG1552 | 258 | consensus Predicted alpha/beta hydrolase [General | 82.36 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 82.33 | |
| PF04551 | 359 | GcpE: GcpE protein; InterPro: IPR004588 This prote | 82.31 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 82.19 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 82.05 | |
| KOG1838 | 409 | consensus Alpha/beta hydrolase [General function p | 81.57 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 81.38 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 81.37 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 81.3 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 81.19 | |
| cd02768 | 386 | MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The Nuo | 81.17 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 81.16 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 81.08 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 80.95 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 80.94 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 80.78 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 80.77 | |
| PRK12270 | 1228 | kgd alpha-ketoglutarate decarboxylase; Reviewed | 80.76 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 80.6 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 80.55 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 80.48 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 80.37 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 80.34 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 80.28 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 80.04 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 80.03 |
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-127 Score=1243.73 Aligned_cols=972 Identities=71% Similarity=1.145 Sum_probs=778.8
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+++++++|++.|+++|||||||+||+|+|+++...+.+..+.+.++.|.....+........ ..+.+.++++.++++++
T Consensus 441 l~~~v~~A~~~A~s~rpGPVhL~iP~~~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~a~~ 519 (1655)
T PLN02980 441 VLTTLDSAVHWATSSPCGPVHINCPFREPLDGSPTNWMSSCLKGLDMWMSNAEPFTKYIQMQ-SSKADGDTTGQITEVLE 519 (1655)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEECccCCccccccccccccccccchhcccCCCccccccccc-cccccccchhhHHHHHH
Confidence 46899999999999999999999999887765422111011111222211111111110000 00112345678999999
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhh--hccccccccchhhhccCccccccC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLE--TEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~--~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
+|.+||||+||+|+|+......++.+|||++|+||++|+++|+|.+..||+||+ +||++ +|++|..........+.
T Consensus 520 ~L~~AkRPvIvaG~G~~~~~a~~~~~LAe~l~~PV~tt~~sg~~~~~~~g~ipe~~~~pl~--~g~~g~~~~~~~~~~~~ 597 (1655)
T PLN02980 520 VIQEAKRGLLLIGAIHTEDDIWAALLLAKHLMWPVVADILSGLRLRKLFKSFPEFELNILF--VDHLDHALLSDSVRNWI 597 (1655)
T ss_pred HHHhCCCcEEEEcCCCchHHHHHHHHHHHhCCCeEEEeCCCCCCCCccccccccccccccc--cchHHHHhCchhhhccC
Confidence 999999999999999865444466999999999999999877544434599999 88885 78887644344455678
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 239 (983)
++|+||+||+++++..++++...+.+.++||||+|+.++++++..++.|++|++.++++|.+.........|.+.+...+
T Consensus 598 ~aDlVl~iG~rl~s~~~t~~~~~~~~~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 677 (1655)
T PLN02980 598 QFDVVIQIGSRITSKRVSQMLEKCFPFSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLKAQFPRRRSKWHGHLQALD 677 (1655)
T ss_pred CCCEEEEeCCccccHHHHHHHHhCCCCeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhhccCcchhHHHHHHHHHHH
Confidence 99999999999976666555544444569999999999999999999999999999999976433222346776665554
Q ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
...............++++.++++.|++.+|++++|++|+|+++|++++|...++++...+++++.+...|+.++.++++
T Consensus 678 ~~~~~~~~~~~~~~~~l~~~~v~~~L~~~Lp~d~ivv~d~g~~ird~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ 757 (1655)
T PLN02980 678 GMVAQEISFQIHAESSLTEPYVAHVISEALTSDSALFIGNSMAIRDADMYGCSSENYSSRIVDMMLSAELPCQWIQVAGN 757 (1655)
T ss_pred HHHHHHHHhhhhcCCCcchHHHHHHHHHhCCCCCeEEEECcHHHHHHHHcCCccccccccccccccccccccccceEEec
Confidence 43322221111112358899999999999999999999999999999999866554211344444333345556656799
Q ss_pred CCCCCccchHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccc
Q 041113 320 RGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILD 399 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~ 399 (983)
+|+|||||++|+|||+++|.+++||||+|||||+|++|||+|++++.|++|++|||+||++|+|+++++.........++
T Consensus 758 ~G~mG~~G~lpaAIGaala~~r~Vv~i~GDGsF~m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~~~~~~~~~ 837 (1655)
T PLN02980 758 RGASGIDGLLSTAIGFAVGCNKRVLCVVGDISFLHDTNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVLN 837 (1655)
T ss_pred CCccchhhhHHHHHHHhhcCCCCEEEEEehHHHHhhhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCCCCcchhHH
Confidence 99999999999999999998899999999999999999999999822499999999999999999886543211112244
Q ss_pred cccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHHHHHHHHHHHHHHHhhhhc
Q 041113 400 QYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNVLSQ 479 (983)
Q Consensus 400 ~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (983)
+++.+.+++||.++|++||+++.+|++++||+++|+++++.++|+||||.++++++.+.++.+.+++.+.+..||.++..
T Consensus 838 ~~~~~~~~~df~~lA~a~G~~~~rV~~~~eL~~aL~~a~~~~~p~lIEV~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 917 (1655)
T PLN02980 838 QYFYTSHDISIENLCLAHGVRHLHVGTKSELEDALFTSQVEQMDCVVEVESSIDANAAFHSTLRKFACQAAEHALGILSE 917 (1655)
T ss_pred HHhcCCCCCCHHHHHHHcCCceeecCCHHHHHHHHHHhhccCCCEEEEEecChhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55666778999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHH
Q 041113 480 FSVPDTISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEE 559 (983)
Q Consensus 480 ~~~~~~~~~~~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~ 559 (983)
++.++...+....|||++|+++.+++||+.|+.++.+++ +.+.++.++|+|++++|.+||||++|.+++.|++.++.+
T Consensus 918 ~~~~~~~~~~~~~~~I~~i~~~~~~lpl~~p~~~a~g~~--~~~~r~~~lV~l~~ddG~~G~GEa~pl~~~~et~~~~~~ 995 (1655)
T PLN02980 918 SSCLHSIIDGVFLCKISGMEYSLYRIQLCAPPTSASVDF--SQFHREGFILSLSLEDGSVGFGEVAPLEIHEEDLLDVEE 995 (1655)
T ss_pred CCcccccccccccceEeEEEEEEEEeeccCCcEeecccc--ccceeeEEEEEEEECCCCEEEEecCCCCCCccccccHHH
Confidence 999988888744599999999999999999999988653 124589999999999999999999998777777776666
Q ss_pred HHHHHHhHhccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCcccccccc
Q 041113 560 QLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISK 639 (983)
Q Consensus 560 ~l~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~ 639 (983)
++..+...+.+.....+.+++.+.+.++.+..+.......++++++|||||||||+||..|+|||+||||.+. ......
T Consensus 996 ~l~~~~~~l~~~~~~~l~p~l~G~~~~~~~~~l~~~~~~~~psa~~ald~ALwDl~gk~~g~Pl~~LLGg~~~-~~~~~~ 1074 (1655)
T PLN02980 996 QLRFLLHVIKGAKISFMLPLLKGSFSSWIWSELGIPPSSIFPSVRCGLEMAILNAIAVRHGSSLLNILDPYQK-DENGSE 1074 (1655)
T ss_pred HHHHHHHHHhhhhhhhhhHhhcCcchHHHHHHhhccccccchHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCC-Ccceec
Confidence 6666655554433333455555554444444332222245789999999999999999999999999988431 001111
Q ss_pred ccceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 041113 640 RSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALE 719 (983)
Q Consensus 640 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~ 719 (983)
.+.+|++|+.+....+++++++++++++++||++||+|+|...++++|+++|++||+++|+++.||+|||++||+++|++
T Consensus 1075 ~~~~v~v~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KlKvG~~~~~~~D~~~i~alRe~~G~~~~LrlDAN~~ws~~~A~~ 1154 (1655)
T PLN02980 1075 QSHSVQICALLDSNGSPLEVAYVARKLVEEGFSAIKLKVGRRVSPIQDAAVIQEVRKAVGYQIELRADANRNWTYEEAIE 1154 (1655)
T ss_pred cccceeeeeccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHH
Confidence 23568888876555689999999999999999999999986335789999999999999999999999999999999999
Q ss_pred HHhhcccCCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHH
Q 041113 720 FGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIAR 799 (983)
Q Consensus 720 ~~~~l~~~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~ 799 (983)
+++.|++++++|||||+++.+++++|++++++|||+||++.+..+.+...+..+++.+++++++|++++||+++++++++
T Consensus 1155 ~~~~L~~~~i~~iEqPl~~~~~l~~l~~~~~iPIA~DEs~~~~~~~~~~~~~~~i~~~~~~i~iK~~~~GGit~~~~ia~ 1234 (1655)
T PLN02980 1155 FGSLVKSCNLKYIEEPVQDEDDLIKFCEETGLPVALDETIDKFEECPLRMLTKYTHPGIVAVVIKPSVVGGFENAALIAR 1234 (1655)
T ss_pred HHHHHhhcCCCEEECCCCCHHHHHHHHHhCCCCEEeCCCcCCcccchHHHHHHHHHCCCeEEEeChhhhCCHHHHHHHHH
Confidence 99999999999999999988999999999999999999999876423345666776778889999999999999999999
Q ss_pred HHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeeccCCCCee
Q 041113 800 WAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICHNSCRGFV 879 (983)
Q Consensus 800 ~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~~P~~pGl 879 (983)
+|+++|++++++|++||+||+++++|+|+.++..+...++.......++.++|++|+.||.+|+...|+.++.-|.++|.
T Consensus 1235 ~A~~~gi~~~~~s~~es~Ig~aA~~hlaa~~~~~~~~~~~~~~~~~~~~~a~Gl~t~~~~~~d~~~~pl~~~~~~~~~~~ 1314 (1655)
T PLN02980 1235 WAQQHGKMAVISAAYESGLGLSAYIQFASYLEMQNAKASREMNKGTCPSVAHGLGTYRWLKEDVTMNPLGIFRSPYSGFI 1314 (1655)
T ss_pred HHHHcCCeEEecCcccCHHHHHHHHHHHHhchhhcccccccccccCCCCcCCCCchHhHhhccCccCCccccccCCCCce
Confidence 99999999999999999999999999999986443222222223345778999999999999998899999999999999
Q ss_pred eEEecchhhhhhhcccccccccccccccceeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHH
Q 041113 880 EASVAKATHILQNLQINNDVICKTSMEEQVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMK 959 (983)
Q Consensus 880 Gv~~d~a~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~ 959 (983)
++.+.++..++++++++.+.+.+++..++++...+.++..+.+|.+++...|... ++++|||+|||++++..|.++++
T Consensus 1315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~i~~~~~G~~~--~~~~vVllHG~~~s~~~w~~~~~ 1392 (1655)
T PLN02980 1315 EASVADASRNLQKFQINNDVIVRTFKEEQVRTYELRVDVDGFSCLIKVHEVGQNA--EGSVVLFLHGFLGTGEDWIPIMK 1392 (1655)
T ss_pred eeechhhHHHHHHhccCHHHHHHHhccCCCceEEEEEccCceEEEEEEEecCCCC--CCCeEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999989888888988888777521 26899999999999999999999
Q ss_pred HhhCCCEEEEEcCCCCCCCCCC
Q 041113 960 AVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 960 ~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
.|+++|+||++|+||||.|+.+
T Consensus 1393 ~L~~~~rVi~~Dl~G~G~S~~~ 1414 (1655)
T PLN02980 1393 AISGSARCISIDLPGHGGSKIQ 1414 (1655)
T ss_pred HHhCCCEEEEEcCCCCCCCCCc
Confidence 9999999999999999999753
|
|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-63 Score=577.82 Aligned_cols=397 Identities=19% Similarity=0.209 Sum_probs=324.5
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+|++++++||++|.++|||||||+||.|......... .+ .. ...+.+.|...+. +++++++
T Consensus 134 ~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv~~~~~~~~----------------~~-~~-~~~~~~~p~~~~~-~~i~~aa 194 (550)
T COG0028 134 DIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAEEP----------------GP-EP-AILPPYRPAPPPP-EAIRKAA 194 (550)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEcChhHhhcccccc----------------cc-cc-cccccCCCCCCcH-HHHHHHH
Confidence 4789999999999999999999999999654432110 00 00 0001111222222 7899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+|+. .++.+++++|||++++||++|++ | ||++|++||++ +|..|..++..++.+++
T Consensus 195 ~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~-g------kg~~p~~hp~~--lG~~g~~g~~~a~~~~~ 265 (550)
T COG0028 195 ELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTTLM-G------KGAVPEDHPLS--LGMLGMHGTKAANEALE 265 (550)
T ss_pred HHHHhCCCCEEEECCCccccccHHHHHHHHHHHCCCEEEccC-c------CccCCCCCccc--cccccccccHHHHHHhh
Confidence 999999999999999987 45678999999999999999998 7 89999999985 79999888877888899
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 239 (983)
+|||||++|+++++..+. +.....+..+||||+|+.++++++++++.|++|++.+|++|.+.+... ...|.++..+.+
T Consensus 266 ~aDlll~vG~rf~~~~~~-~~~f~~~~~ii~iDidp~ei~k~~~~~~~i~gD~~~~l~~L~~~l~~~-~~~~~~~~~~~~ 343 (550)
T COG0028 266 EADLLLAVGARFDDRVTG-YSGFAPPAAIIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELKPE-RAAWLEELLEAR 343 (550)
T ss_pred cCCEEEEecCCCcccccc-hhhhCCcCCEEEEeCChHHhCCCCCCCeeEeccHHHHHHHHHHhhhhc-chHHHHHHHHHH
Confidence 999999999999887776 443333334999999999999999999999999999999999987543 457877776655
Q ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
..+........ .....+|.++++.|++.+++|+++++|.|+ +.+|..+++++ ++||+|+ .+++
T Consensus 344 ~~~~~~~~~~~-~~~~~~p~~v~~~l~~~~~~daiv~~d~G~----~~~w~a~~~~~-~~p~~~~-----------~s~~ 406 (550)
T COG0028 344 AAYRDLALEEL-ADDGIKPQYVIKVLRELLPDDAIVVTDVGQ----HQMWAARYFDF-YRPRRFL-----------TSGG 406 (550)
T ss_pred Hhhhhhhhhcc-CCCccCHHHHHHHHHHhCCCCeEEEeCCcH----HHHHHHHhccc-CCCCcEE-----------cCCC
Confidence 44433222211 122337999999999999999999999999 89999998886 5776665 3689
Q ss_pred CCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 320 RGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
+|+||| |+|+|||||+|. +++||+|+|||||+|++|||+|++| |++|+++||+||++||++++++... ..
T Consensus 407 ~GtMG~--glPaAIGAkla~P~r~Vv~i~GDG~F~m~~qEL~Ta~r--~~lpv~ivv~nN~~~g~v~~~q~~~-----~~ 477 (550)
T COG0028 407 LGTMGF--GLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQELETAVR--YGLPVKIVVLNNGGYGMVRQWQELF-----YG 477 (550)
T ss_pred Cccccc--hHHHHHHHHhhCCCCcEEEEEcccHHhccHHHHHHHHH--hCCCEEEEEEECCccccchHHHHHh-----cC
Confidence 999999 999999999999 8999999999999999999999999 9999999999999999998753211 11
Q ss_pred ccccccCCCCC-HHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcc
Q 041113 399 DQYFYTTHNIS-IQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCID 453 (983)
Q Consensus 399 ~~~~~~~~~~d-f~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~ 453 (983)
.+++.+..... |+++|++||+++++|++++||+++|+++++.++|+||||.||++
T Consensus 478 ~~~~~~~~~~~~f~klAea~G~~g~~v~~~~el~~al~~al~~~~p~lidv~id~~ 533 (550)
T COG0028 478 GRYSGTDLGNPDFVKLAEAYGAKGIRVETPEELEEALEEALASDGPVLIDVVVDPE 533 (550)
T ss_pred CCcceeecCCccHHHHHHHcCCeeEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCc
Confidence 12233333222 99999999999999999999999999999999999999999988
|
|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-59 Score=555.83 Aligned_cols=410 Identities=15% Similarity=0.188 Sum_probs=315.0
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|+||++.|+++|||||||+||.|.+..+.... ..+...... ..+.++++.+++++
T Consensus 137 ~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~---------------~~~~~~~~~-----~~~~~~~~~i~~~~ 196 (588)
T TIGR01504 137 LVPRVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFD---------------PDTYEPLPV-----YKPAATRAQIEKAV 196 (588)
T ss_pred HHHHHHHHHHHHHccCCCCeEEEEeCcchhhcccCCc---------------ccccccccC-----CCCCCCHHHHHHHH
Confidence 3688999999999999999999999999643222100 000000000 01234667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhh-ccCcccccc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHA-LLSESVKDW 158 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~-~~~~~~~~~ 158 (983)
++|.+||||+||+|+|+. .++.+++.+|||++|+||++|++ | ||+||++||++ +|++|.. ++..++..+
T Consensus 197 ~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~g~PV~tt~~-g------kg~~p~~hpl~--~G~~g~~~~~~~a~~~l 267 (588)
T TIGR01504 197 EMLNAAERPLIVAGGGVINADAADLLQEFAELTGVPVIPTLM-G------WGCIPDDHELM--AGMVGLQTSHRYGNATL 267 (588)
T ss_pred HHHHhCCCcEEEECCCcchhhhHHHHHHHHHHhCCCeEEcCc-c------CCCCCCCChhh--CcCCCCCCCcHHHHHHH
Confidence 999999999999999987 45678999999999999999997 7 89999999995 7888765 344556678
Q ss_pred CCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC-------CCChhH
Q 041113 159 IQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP-------HRSSKW 231 (983)
Q Consensus 159 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~-------~~~~~w 231 (983)
++||+||++|+++++..+..|....+..++||||.|+.++++++..++.|++|++.+|++|.+.+.. .....|
T Consensus 268 ~~aD~iL~lG~~l~~~~t~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~ 347 (588)
T TIGR01504 268 LESDFVFGIGNRWANRHTGSVDVYTEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVAQELKKAGRLPDRSEW 347 (588)
T ss_pred HhCCEEEEECCCCCccccCcccccCCCCeEEEeeCCHHHhcCcCCCCeEEEeCHHHHHHHHHHHhhhhcccccccchHHH
Confidence 9999999999999776654443222334699999999999999999999999999999999886532 112355
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCC
Q 041113 232 CSFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPH 311 (983)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 311 (983)
.+.+...+...... ....+.++++..+++.|++.++++.+|+.|+|+ +..|..+++++ ++|++|+
T Consensus 348 ~~~~~~~~~~~~~~---~~~~~~~l~p~~~~~~l~~~l~~d~ivv~D~G~----~~~~~~~~~~~-~~p~~~~------- 412 (588)
T TIGR01504 348 AADCQQRKRTLLRK---THFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGL----SQIAGAQMLHV-YKPRHWI------- 412 (588)
T ss_pred HHHHHHHHHhCccc---ccCCCCCcCHHHHHHHHHHhCCCCCEEEECCcH----HHHHHHHhccc-cCCCcEE-------
Confidence 54444332211110 011234699999999999999999999999999 67777777664 5555554
Q ss_pred cceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 312 QWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 312 ~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
.++++|+||| |+|+|||+++|. +++||+|+|||||||++|||+|++| |++|+++||+||++|++++..+..
T Consensus 413 ----~~~~~gsmG~--glpaaiGa~lA~pdr~Vv~i~GDG~f~m~~~EL~Ta~r--~~lpvv~iV~NN~~yg~i~~~q~~ 484 (588)
T TIGR01504 413 ----NCGQAGPLGW--TIPAALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQ--HNIPYIHVLVNNAYLGLIRQAQRA 484 (588)
T ss_pred ----eCCccccccc--hHhHHHhhhhhCCCCcEEEEEcchHhhccHHHHHHHHH--hCCCeEEEEEeCCchHHHHHHHHH
Confidence 3578899999 999999999999 9999999999999999999999999 999999999999999998764211
Q ss_pred CCCC---cccccc-cc--ccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc----cCCCEEEEEEcCcccchHHHH
Q 041113 391 DRTE---PRILDQ-YF--YTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH----LGTDRVIEVESCIDANATFHS 460 (983)
Q Consensus 391 ~~~~---~~~~~~-~~--~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~----~~~p~lIeV~~~~~~~~~~~~ 460 (983)
.... ...++. .. ...+++||+++|++||+++.+|++.+||+++|+++++ .++|+||||.+++++.++..+
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~~~~~~~~~ 564 (588)
T TIGR01504 485 FDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEEIAPAFEQAKALMAEHRVPVVVEVILERVTNISMGS 564 (588)
T ss_pred hcccccceeeccccccccccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEeccccCCCCCC
Confidence 0000 000000 00 0112699999999999999999999999999999984 799999999999988764433
Q ss_pred HH
Q 041113 461 ML 462 (983)
Q Consensus 461 ~~ 462 (983)
.+
T Consensus 565 ~~ 566 (588)
T TIGR01504 565 EI 566 (588)
T ss_pred CH
Confidence 33
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-58 Score=544.22 Aligned_cols=395 Identities=14% Similarity=0.111 Sum_probs=309.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
++++|+||++.|+++|+|||||+||.|.+....... ..+.... . . +...++++.++++++
T Consensus 150 ~~~~i~~A~~~A~s~~~GPV~l~iP~Dv~~~~~~~~---------------~~~~~~~-~-~---~~~~~~~~~i~~aa~ 209 (565)
T PRK06154 150 VPELMRRAFTRLRNGRPGPVVLELPVDVLAEELDEL---------------PLDHRPS-R-R---SRPGADPVEVVEAAA 209 (565)
T ss_pred HHHHHHHHHHHHhcCCCceEEEecchHHhhhhcccc---------------cccccCC-C-C---CCCCCCHHHHHHHHH
Confidence 678999999999999999999999999543221100 0000000 0 0 122456778999999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
+|++||||+||+|+|++ .++.+++.+|||++|+||++|++ | ||+||++||++ +|..|..+...++..+++
T Consensus 210 ~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~PV~tt~~-g------kg~~~~~hpl~--~G~~g~~~~~~~~~~~~~ 280 (565)
T PRK06154 210 LLLAAERPVIYAGQGVLYAQATPELKELAELLEIPVMTTLN-G------KSAFPEDHPLA--LGSGGRARPATVAHFLRE 280 (565)
T ss_pred HHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEECCC-c------ccCCCCCCccc--cCCCCCCCcHHHHHHHHh
Confidence 99999999999999987 45678999999999999999997 6 89999999996 676665554456667899
Q ss_pred CCEEEEeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCC------ChhHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHR------SSKWCS 233 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~------~~~w~~ 233 (983)
||+||+||++++...+ ++ .+++ .++||||+|+..++++++.++.|.+|++.+|++|.+.+.... ...|.+
T Consensus 281 aDlvL~lG~~l~~~~~-~~--~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~ 357 (565)
T PRK06154 281 ADVLFGIGCSLTRSYY-GL--PMPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELRRRVGPDRGRAQQVAA 357 (565)
T ss_pred CCEEEEECCCCccccc-Cc--cCCCCCeEEEEECCHHHhccccCCCeeEEcCHHHHHHHHHHHhhhcccccccchHHHHH
Confidence 9999999999975432 22 2333 479999999999999999999999999999999988765421 235766
Q ss_pred HHHHHHHHHHHHHHhhh-cccCCCCHHHHHHHHHhhcC-CCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCC
Q 041113 234 FLRALDMMVASEISFQI-CADYSLTEPHVAHELSRALT-SNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPH 311 (983)
Q Consensus 234 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~-~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 311 (983)
.+...+..+........ ....++++..++++|++.++ ++.+++.|.|+ +..|..+++++ .+|++|+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~~d~iv~~D~G~----~~~~~~~~~~~-~~p~~~~------- 425 (565)
T PRK06154 358 EIEAVRAAWLAKWMPKLTSDSTPINPYRVVWELQHAVDIKTVIITHDAGS----PRDQLSPFYVA-SRPGSYL------- 425 (565)
T ss_pred HHHHHHHHhHHhhhhhccCCCCCcCHHHHHHHHHHhcCCCCEEEEECCcc----cHHHHHHhCCC-CCCCeEE-------
Confidence 55444333322211111 23457999999999999997 47888889999 66777666664 5666554
Q ss_pred cceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 312 QWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 312 ~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
.++++|+||| |+|+|||+++|+ +++||+++|||||+|++|||+|++| ||+|+++||+||++|++++.....
T Consensus 426 ----~~~~~gsmG~--glpaaiGa~la~p~r~Vv~i~GDG~f~m~~~EL~Ta~r--~~lpi~~vV~NN~~yg~~~~~~~~ 497 (565)
T PRK06154 426 ----GWGKTTQLGY--GLGLAMGAKLARPDALVINLWGDAAFGMTGMDFETAVR--ERIPILTILLNNFSMGGYDKVMPV 497 (565)
T ss_pred ----ccCCCccccc--HHHHHHHHHHhCCCCcEEEEEcchHHhccHHHHHHHHH--hCCCeEEEEEECCccceeehhhhh
Confidence 3567899999 999999999999 9999999999999999999999999 999999999999999998764211
Q ss_pred CCCCccccccccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc---cCCCEEEEEEcCccc
Q 041113 391 DRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH---LGTDRVIEVESCIDA 454 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~---~~~p~lIeV~~~~~~ 454 (983)
...++.++..++||+++|++||+++.+|++.+||+++|+++++ .++|+||||.++++.
T Consensus 498 ------~~~~~~~~~~~~df~~lA~a~G~~g~~V~~~~el~~al~~a~~~~~~~~p~lIev~v~~~~ 558 (565)
T PRK06154 498 ------STTKYRATDISGDYAAIARALGGYGERVEDPEMLVPALLRALRKVKEGTPALLEVITSEET 558 (565)
T ss_pred ------hcCcccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhccCCCeEEEEEEeChHH
Confidence 1112223334689999999999999999999999999999985 689999999998764
|
|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-58 Score=549.35 Aligned_cols=401 Identities=18% Similarity=0.186 Sum_probs=313.3
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.|++|++.|+++++|||||+||.|.+......... .+.. .......|...++++.+++++
T Consensus 137 ~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~--------------~~~~--~~~~~~~p~~~~~~~~i~~~~ 200 (572)
T PRK08979 137 DIPEIIKKAFYIASTGRPGPVVIDLPKDCLNPAILHPYE--------------YPES--IKMRSYNPTTSGHKGQIKRGL 200 (572)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEecCHhHhhhhhccccc--------------CCcc--cccccCCCCCCCCHHHHHHHH
Confidence 367899999999999999999999999964322110000 0000 000000012234567899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+||+|+|++ .++.+++.+|||++|+||+||++ | ||+||++||++ +|.+|..++..++..++
T Consensus 201 ~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~-g------kg~~~~~hp~~--~G~~G~~~~~~~~~~~~ 271 (572)
T PRK08979 201 QALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVSTLM-G------LGAFPGTHKNS--LGMLGMHGRYEANMAMH 271 (572)
T ss_pred HHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEccc-c------cccCCCCCccc--ccCCccCCCHHHHHHHH
Confidence 999999999999999986 56678999999999999999997 6 89999999996 78888888877777889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCC-------ChhHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHR-------SSKWC 232 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~-------~~~w~ 232 (983)
+||+||+||+++++..+..|....+..++||||.|+..++++++.++.|++|++.+|++|.+.+.... ...|.
T Consensus 272 ~aD~vl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 351 (572)
T PRK08979 272 NADLIFGIGVRFDDRTTNNLEKYCPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLDESGETNDEAAIASWW 351 (572)
T ss_pred hCCEEEEEcCCCCccccCchhhcCCCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHhhhhccccccccchHHHH
Confidence 99999999999987765444333333479999999999999999999999999999999988664321 13565
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCc
Q 041113 233 SFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQ 312 (983)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 312 (983)
+++...+...... ......++++.++++.|++.++++.+++.|+|+ +..|..+++.+ .+|++|+
T Consensus 352 ~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~l~~~l~~d~ivv~d~G~----~~~~~~~~~~~-~~~~~~~-------- 415 (572)
T PRK08979 352 NEIEVWRSRNCLA---YDKSSERIKPQQVIETLYKLTNGDAYVASDVGQ----HQMFAALYYPF-DKPRRWI-------- 415 (572)
T ss_pred HHHHHHHHhCchh---ccCCCCCcCHHHHHHHHHHhcCCCeEEEECCcH----HHHHHHHhcCc-CCCCeEE--------
Confidence 5444332211100 011234699999999999999999999999998 66777777664 5555554
Q ss_pred ceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC
Q 041113 313 WIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD 391 (983)
Q Consensus 313 ~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~ 391 (983)
.++++|+||| |+|+|||+++|+ +++||+|+|||||+|++|||+|++| |++|+++||+||++|+++++.+...
T Consensus 416 ---~~~~~g~mG~--glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~r--~~lpv~~vV~NN~~y~~i~~~q~~~ 488 (572)
T PRK08979 416 ---NSGGLGTMGF--GLPAAMGVKFAMPDETVVCVTGDGSIQMNIQELSTALQ--YDIPVKIINLNNRFLGMVKQWQDMI 488 (572)
T ss_pred ---ccCCcccccc--hhhHHHhhhhhCCCCeEEEEEcchHhhccHHHHHHHHH--cCCCeEEEEEeCCccHHHHHHHHHH
Confidence 3578899999 999999999999 8999999999999999999999999 9999999999999999997532110
Q ss_pred CCCcccccccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-CCCEEEEEEcCccc
Q 041113 392 RTEPRILDQYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-GTDRVIEVESCIDA 454 (983)
Q Consensus 392 ~~~~~~~~~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-~~p~lIeV~~~~~~ 454 (983)
. ..+.... ..++||+++|++||+++++|++.+||+++|+++++. ++|+||||.+++++
T Consensus 489 ~-----~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lIev~i~~~~ 549 (572)
T PRK08979 489 Y-----QGRHSHSYMDSVPDFAKIAEAYGHVGIRISDPDELESGLEKALAMKDRLVFVDINVDETE 549 (572)
T ss_pred h-----CCcccccCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEeCCcc
Confidence 0 0011111 135899999999999999999999999999999975 99999999999755
|
|
| >TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-57 Score=510.78 Aligned_cols=355 Identities=19% Similarity=0.226 Sum_probs=294.4
Q ss_pred EeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC---cCcccHHHHHHHHH-HHHhHhcc
Q 041113 495 ICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQLR-FLLHFMTG 570 (983)
Q Consensus 495 I~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~---~~~~~~~~~~~~l~-~~~~~l~g 570 (983)
|++|+++.+++|++.||.++.+++ ..++.++|||+|++|++||||+.+.. +++++...+...+. .++|.|+|
T Consensus 1 I~~i~~~~~~~pl~~~~~~~~~~~----~~~~~~~V~v~t~~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 76 (368)
T TIGR02534 1 IQSVETILVDVPTIRPHKLATTTM----TEQTLVLVRIRTEDGVIGYGEGTTIGGLWWGGESPETIKANIDTYLAPVLVG 76 (368)
T ss_pred CeEEEEEEEeccccCceEEeeEEE----eeccEEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcC
Confidence 789999999999999999988764 34889999999999999999998652 34555555555554 58999999
Q ss_pred CcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEee
Q 041113 571 AKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALI 650 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~ 650 (983)
+++.++..++... .... ...+.+++|||+||||++||.+|+|||+||||.. +++|++|+++
T Consensus 77 ~~~~~~~~~~~~~-----~~~~-----~~~~~a~said~AlwDl~gK~~g~Pv~~LLGg~~---------r~~v~~~~~~ 137 (368)
T TIGR02534 77 RDATEIAAIMADL-----EKVV-----AGNRFAKAAVDTALHDAQARRLGVPVSELLGGRV---------RDSVDVTWTL 137 (368)
T ss_pred CChhhHHHHHHHH-----HHHh-----cCCchHHHHHHHHHHHHHHHHcCCcHHHHhCCCC---------CCceEEEEEE
Confidence 9987765544321 1111 0134589999999999999999999999999975 5789999887
Q ss_pred cCCCCHHHHHHHHHHhh-hcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCC
Q 041113 651 DSNKSPVEVASIATTLV-EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729 (983)
Q Consensus 651 ~~~~~~~~~~~~~~~~~-~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i 729 (983)
.. .++++..+++++++ ++||++||+|+|. .++++|+++|+++|+++|+++.|++|+|++||+++|+++++.|+++++
T Consensus 138 ~~-~~~~~~~~~~~~~~~~~Gf~~~KiKvg~-~~~~~d~~~v~~~re~~g~~~~l~~DaN~~~~~~~A~~~~~~l~~~~~ 215 (368)
T TIGR02534 138 AS-GDTDRDIAEAEERIEEKRHRSFKLKIGA-RDPADDVAHVVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGV 215 (368)
T ss_pred eC-CCHHHHHHHHHHHHHhcCcceEEEEeCC-CCcHHHHHHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCh
Confidence 43 44555566677665 4899999999987 378899999999999999999999999999999999999999999999
Q ss_pred ceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCC
Q 041113 730 QYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGK 806 (983)
Q Consensus 730 ~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi 806 (983)
.|||||++ +++++++|++++++||++||++.+..+ +..+++. ++|++|+|++++||++++++++++|+++|+
T Consensus 216 ~~iEeP~~~~d~~~~~~l~~~~~~pia~dE~~~~~~~-----~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi 290 (368)
T TIGR02534 216 ELIEQPTPAENREALARLTRRFNVPIMADESVTGPAD-----ALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGI 290 (368)
T ss_pred hheECCCCcccHHHHHHHHHhCCCCEEeCcccCCHHH-----HHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCC
Confidence 99999998 678899999999999999999998764 5555544 579999999999999999999999999999
Q ss_pred cEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeEE
Q 041113 807 MAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEAS 882 (983)
Q Consensus 807 ~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~ 882 (983)
+++.||+++++|+.++++|++++++|+.+. ..+....++.+|++.+|+.+++ +|++||||++
T Consensus 291 ~~~~~~~~~s~i~~aa~~h~~a~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ 356 (368)
T TIGR02534 291 ALYGGTMLEGPIGTIASAHFFATFPALSFG--------------TELFGPLLLKDEILTEPLQYEDFQLHLPQGPGLGVE 356 (368)
T ss_pred ceeeecchhhHHHHHHHHHHHHhCCCCccc--------------cccccHHHhhhccccCCceeeCCEEecCCCCcCCcc
Confidence 999999999999999999999998864210 1122334556677778888874 9999999999
Q ss_pred ecchhhhhhhccc
Q 041113 883 VAKATHILQNLQI 895 (983)
Q Consensus 883 ~d~a~~~~~~~~~ 895 (983)
+| ++.+++++.
T Consensus 357 ~d--~~~~~~~~~ 367 (368)
T TIGR02534 357 VD--EDKVNFYRR 367 (368)
T ss_pred cC--HHHHHHhhc
Confidence 99 888888764
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). |
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-58 Score=548.86 Aligned_cols=402 Identities=18% Similarity=0.182 Sum_probs=313.4
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.|++||+.|.++++|||||+||.|.+....... + ..+... ......+...++++.+++++
T Consensus 137 ~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv~~~~~~~~-----------~---~~~~~~--~~~~~~~~~~~~~~~i~~a~ 200 (574)
T PRK07979 137 DIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLP-----------Y---VWPESV--SMRSYNPTTQGHKGQIKRAL 200 (574)
T ss_pred HHHHHHHHHHHHHccCCCCcEEEEcChhhhhhhhccc-----------c---ccCccc--ccccCCCCCCCCHHHHHHHH
Confidence 3688999999999999999999999999643211000 0 000000 00000112234667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+|++ .++.++|.+|||++|+||++|++ | ||+||++||++ +|.+|..++..++..++
T Consensus 201 ~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~-g------kg~~p~~hp~~--~G~~G~~~~~~~~~~l~ 271 (574)
T PRK07979 201 QTLVAAKKPVVYVGGGAINAACHQQLKELVEKLNLPVVSSLM-G------LGAFPATHRQS--LGMLGMHGTYEANMTMH 271 (574)
T ss_pred HHHHcCCCCEEEECCCccccchHHHHHHHHHHhCCCEEEccc-c------CCCCCCCCccc--ccCCcCCCCHHHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999996 78888878777878889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-------CChhHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-------RSSKWC 232 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-------~~~~w~ 232 (983)
+||+||+||+++++..+..|....+..++||||.|+..++++++.++.|++|++.+|++|++.+... ....|.
T Consensus 272 ~aDlvl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 351 (574)
T PRK07979 272 NADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWW 351 (574)
T ss_pred hCCEEEEeCCCCcccccCChhhcCCCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhhhhccccccccchHHHH
Confidence 9999999999997776544433333347999999999999999999999999999999998876431 123454
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCc
Q 041113 233 SFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQ 312 (983)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 312 (983)
+.+...+.... ........++++..+++.|++.++++++++.|+|+ +..|..+++++ .+|++|+
T Consensus 352 ~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~~~l~~d~ivv~d~G~----~~~~~~~~~~~-~~p~~~~-------- 415 (574)
T PRK07979 352 QQIEQWRARQC---LKYDTHSEKIKPQAVIETLWRLTKGDAYVTSDVGQ----HQMFAALYYPF-DKPRRWI-------- 415 (574)
T ss_pred HHHHHHHHhCh---hhccCCCCCcCHHHHHHHHHhhcCCCEEEEeCCcH----HHHHHHHhccc-CCCCeEE--------
Confidence 44333222110 01001234699999999999999999999999998 67777777664 5555544
Q ss_pred ceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC
Q 041113 313 WIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD 391 (983)
Q Consensus 313 ~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~ 391 (983)
.++++|+||| |+|+|||+++|+ +++||+|+|||||+|++|||+|++| |++|+++||+||++|+++++.+...
T Consensus 416 ---~~~~~g~mG~--glpaaiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~r--~~l~v~ivV~NN~~yg~i~~~q~~~ 488 (574)
T PRK07979 416 ---NSGGLGTMGF--GLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQ--YELPVLVLNLNNRYLGMVKQWQDMI 488 (574)
T ss_pred ---eCCCccchhh--HHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHH--hCCCeEEEEEeCchhhHHHHHHHHh
Confidence 3578899999 999999999999 9999999999999999999999999 9999999999999999987642110
Q ss_pred CCCcccccccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc---CCCEEEEEEcCcccc
Q 041113 392 RTEPRILDQYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL---GTDRVIEVESCIDAN 455 (983)
Q Consensus 392 ~~~~~~~~~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~---~~p~lIeV~~~~~~~ 455 (983)
. ..+.... ..++||+++|++||+++++|++.+||+++|+++++. ++|+||||.++++++
T Consensus 489 ~-----~~~~~~~~~~~~~d~~~iA~a~G~~g~~v~~~~eL~~al~~a~~~~~~~~p~lIeV~i~~~~~ 552 (574)
T PRK07979 489 Y-----SGRHSQSYMQSLPDFVRLAEAYGHVGIQISHPDELESKLSEALEQVRNNRLVFVDVTVDGSEH 552 (574)
T ss_pred c-----CCccccccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhccCCCCcEEEEEEECCccC
Confidence 0 0111111 135899999999999999999999999999999875 899999999997653
|
|
| >cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-57 Score=510.22 Aligned_cols=352 Identities=19% Similarity=0.221 Sum_probs=294.5
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC---cCcccHHHHHHHHH-HHHhHhc
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQLR-FLLHFMT 569 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~---~~~~~~~~~~~~l~-~~~~~l~ 569 (983)
||++|+++.+++|++.|+.++.+.+ ..++.++|||+|++|++||||+.+.+ ++.++...+...++ .+.|.++
T Consensus 1 ~I~~i~~~~~~lpl~~~~~~~~~~~----~~~~~~~V~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 76 (365)
T cd03318 1 KIEAIETTIVDLPTRRPHQFAGTTM----HTQSLVLVRLTTSDGVVGIGEATTPGGPAWGGESPETIKAIIDRYLAPLLI 76 (365)
T ss_pred CeEEEEEEEEeccccCceEEeeeeE----eecceEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHc
Confidence 6999999999999999999987754 34889999999999999999998764 44555555555554 5789999
Q ss_pred cCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEe
Q 041113 570 GAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICAL 649 (983)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~ 649 (983)
|+++.++..++..+ +... . ..+.+++||||||||++||.+|+|+|+||||.. +++|++|++
T Consensus 77 G~~~~~~~~~~~~l-----~~~~--~---~~~~a~said~AlwDl~gK~~g~Pl~~LLGg~~---------~~~v~~~~~ 137 (365)
T cd03318 77 GRDATNIGAAMALL-----DRAV--A---GNLFAKAAIEMALLDAQGRRLGLPVSELLGGRV---------RDSLPVAWT 137 (365)
T ss_pred CCChHHHHHHHHHH-----HHHh--c---CCccHHHHHHHHHHHHHHhHcCCCHHHHcCCCc---------CCceEEEEE
Confidence 99988765544321 1111 0 135689999999999999999999999999975 478999988
Q ss_pred ecCCCCHHHHHHHHHHhhhcC-CCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCC
Q 041113 650 IDSNKSPVEVASIATTLVEEG-FTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD 728 (983)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~G-~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~ 728 (983)
+. ..+++++.+++++++++| |++||+|+|. .++++|+++|+++|+.+|+++.||+|+|++||.++|+++++.|++++
T Consensus 138 ~~-~~~~~~~~~~~~~~~~~G~f~~~KiKvg~-~~~~~d~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~~~ 215 (365)
T cd03318 138 LA-SGDTERDIAEAEEMLEAGRHRRFKLKMGA-RPPADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAG 215 (365)
T ss_pred Ee-CCCHHHHHHHHHHHHhCCCceEEEEEeCC-CChHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 63 346677888899999999 9999999996 36889999999999999999999999999999999999999999999
Q ss_pred CceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcC
Q 041113 729 LQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHG 805 (983)
Q Consensus 729 i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~g 805 (983)
+.|||||++ +++++++|++++++||++||++.++.+ +..+++.+ +|++|+|++++||++++++++++|+++|
T Consensus 216 ~~~iEeP~~~~~~~~~~~l~~~~~~pia~dE~~~~~~~-----~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~g 290 (365)
T cd03318 216 VELIEQPVPRENLDGLARLRSRNRVPIMADESVSGPAD-----AFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAG 290 (365)
T ss_pred cceeeCCCCcccHHHHHHHHhhcCCCEEcCcccCCHHH-----HHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcC
Confidence 999999998 688899999999999999999998764 66666554 6999999999999999999999999999
Q ss_pred CcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeE
Q 041113 806 KMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEA 881 (983)
Q Consensus 806 i~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv 881 (983)
+++++||+++++|+.++++|++++++|..+ .+.+....++.+|++.+|+.+++ +|++||||+
T Consensus 291 i~~~~~~~~~s~i~~aa~~hlaaa~~~~~~--------------~~e~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv 356 (365)
T cd03318 291 IALYGGTMLESSIGTAASAHLFATLPSLPF--------------GCELFGPLLLAEDLLEEPLAYRDGELHVPTGPGLGV 356 (365)
T ss_pred CceeecCcchhHHHHHHHHHHHHhCCCCcc--------------cccccchHhhhcccccCCceeECCEEeCCCCCcCCc
Confidence 999999999999999999999999885310 01112223455677778888874 999999999
Q ss_pred Eecchhhhhh
Q 041113 882 SVAKATHILQ 891 (983)
Q Consensus 882 ~~d~a~~~~~ 891 (983)
++| ++.++
T Consensus 357 ~~d--~~~l~ 364 (365)
T cd03318 357 RLD--EDKVR 364 (365)
T ss_pred ccC--HHHhc
Confidence 999 66543
|
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-57 Score=544.95 Aligned_cols=400 Identities=14% Similarity=0.154 Sum_probs=311.1
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|++|++.|+++|+|||||+||.|++....... .+... +....+.+.+.++++.+++++
T Consensus 144 ~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~~~~~~~~----------------~~~~~-~~~~~~~~~~~~~~~~l~~a~ 206 (595)
T PRK09107 144 DLARVIHEAFHVATSGRPGPVVVDIPKDVQFATGTYT----------------PPQKA-PVHVSYQPKVKGDAEAITEAV 206 (595)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEecCCChhhcccccc----------------ccccc-ccccCCCCCCCCCHHHHHHHH
Confidence 3688999999999999999999999999643221100 00000 000000112235667899999
Q ss_pred HHHhcCCceEEEEccCCC-hh--HHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccc
Q 041113 81 ELVQGVNKGLLLVGAVHN-ED--EIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKD 157 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~--~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~ 157 (983)
++|++||||+||+|+|+. ++ +.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..++......
T Consensus 207 ~~L~~A~rPvil~G~g~~~~~~~a~~~l~~lae~lg~pv~tt~~-g------kg~~p~~hpl~--~G~~G~~~~~~~~~~ 277 (595)
T PRK09107 207 ELLANAKRPVIYSGGGVINSGPEASRLLRELVELTGFPITSTLM-G------LGAYPASGKNW--LGMLGMHGTYEANMA 277 (595)
T ss_pred HHHHhCCCcEEEECCcccccchhHHHHHHHHHHHHCCCEEECcc-c------cccCCCCCCcc--cCCCCCCccHHHHHH
Confidence 999999999999999986 33 678999999999999999997 6 89999999996 788887777777778
Q ss_pred cCCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCC-------Chh
Q 041113 158 WIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHR-------SSK 230 (983)
Q Consensus 158 ~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~-------~~~ 230 (983)
+++||+||+||+++++..+..|....+..++||||.|+..++++++.++.|++|++.+|++|.+.+.... ...
T Consensus 278 l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~ 357 (595)
T PRK09107 278 MHDCDVMLCVGARFDDRITGRLDAFSPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLWKARGKKPDKEALAD 357 (595)
T ss_pred HHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhhhccccccccchHH
Confidence 8999999999999977665444333334579999999999999999999999999999999988764311 234
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcC-CCceEEEecCcchhhhhhhcCCCcccccccccccccCCC
Q 041113 231 WCSFLRALDMMVASEISFQICADYSLTEPHVAHELSRALT-SNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEF 309 (983)
Q Consensus 231 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 309 (983)
|.+.+.+.+.... ........++++..+++.|++.++ ++.+++.|+|+ +..|..+++++ ++|++|+
T Consensus 358 ~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~l~~~l~~~d~iv~~d~G~----~~~~~~~~~~~-~~p~~~~----- 424 (595)
T PRK09107 358 WWGQIARWRARNS---LAYTPSDDVIMPQYAIQRLYELTKGRDTYITTEVGQ----HQMWAAQFFGF-EEPNRWM----- 424 (595)
T ss_pred HHHHHHHHHHhCh---hhccCCCCCcCHHHHHHHHHHhCCCCCeEEEECCcH----HHHHHHHhccc-CCCCeEE-----
Confidence 5443332222100 010112356999999999999997 57788899998 77788777775 5666555
Q ss_pred CCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCC
Q 041113 310 PHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLP 388 (983)
Q Consensus 310 ~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~ 388 (983)
.++++|+||| |+|+|||+++|. +++||+|+|||||||++|||+|++| |++|+++||+||++|++++..+
T Consensus 425 ------~~~~~gsmG~--glpaaiGa~lA~p~r~Vv~i~GDG~f~m~~~EL~Ta~r--~~lpvi~vV~NN~~y~~i~~~q 494 (595)
T PRK09107 425 ------TSGGLGTMGY--GLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSTAVQ--YNLPVKIFILNNQYMGMVRQWQ 494 (595)
T ss_pred ------cCCCchhhhh--hHHHHHHHHHhCCCCeEEEEEcCchhhccHHHHHHHHH--hCCCeEEEEEeCCccHHHHHHH
Confidence 3578899999 999999999999 9999999999999999999999999 9999999999999999987532
Q ss_pred CCCCCCcccccccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 389 IADRTEPRILDQYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 389 ~~~~~~~~~~~~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
... ...++... ..++||.++|++||+++.+|++.+||+++|+++++.++|+||||.+++.+
T Consensus 495 ~~~-----~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~i~~~~ 557 (595)
T PRK09107 495 QLL-----HGNRLSHSYTEAMPDFVKLAEAYGAVGIRCEKPGDLDDAIQEMIDVDKPVIFDCRVANLE 557 (595)
T ss_pred HHH-----hCCccccccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCcc
Confidence 100 00111111 13589999999999999999999999999999999999999999999755
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=543.68 Aligned_cols=397 Identities=18% Similarity=0.199 Sum_probs=311.5
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++++++|++.|+++|||||||+||.|.+..+.... . . ...+... +.+...+++..+++++
T Consensus 143 ~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~-~----------~-~~~~~~~------~~~~~~~~~~~i~~~~ 204 (566)
T PRK07282 143 DIPRIITEAVHIATTGRPGPVVIDLPKDVSALETDFI-Y----------D-PEVNLPS------YQPTLEPNDMQIKKIL 204 (566)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEeCChhhhhhhhccc-c----------c-ccccccC------CCCCCCCCHHHHHHHH
Confidence 3678999999999999999999999999643221100 0 0 0000000 0012234567899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|.+||||+||+|+|++ .++.+++++|||++|+||++|++ | ||+||++||++ +|.+|..++...+..++
T Consensus 205 ~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~pv~tt~~-g------kg~ip~~hpl~--~G~~G~~~~~~~~~~~~ 275 (566)
T PRK07282 205 KQLSKAKKPVILAGGGINYAEAATELNAFAERYQIPVVTTLL-G------QGTIATSHPLF--LGMGGMHGSYAANIAMT 275 (566)
T ss_pred HHHHcCCCcEEEECCCcCcccHHHHHHHHHHHhCCCEEeccc-c------CCCCCCCChhh--cCCCCCCCCHHHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999996 67888777666777889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-CChhHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-RSSKWCSFLRAL 238 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-~~~~w~~~~~~~ 238 (983)
+||+||+||+++.+..+..+....+..++||||+|+..++++++.++.+++|++.+|++|++.+... ....|.+++...
T Consensus 276 ~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~ 355 (566)
T PRK07282 276 EADFMINIGSRFDDRLTGNPKTFAKNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQMLLAEPTVHNNTEKWIEKVTKD 355 (566)
T ss_pred hCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhcccCChHHHHHHHHHH
Confidence 9999999999997765543333233347999999999999999999999999999999999876432 234676655433
Q ss_pred HHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEee
Q 041113 239 DMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAG 318 (983)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 318 (983)
+.... .......++++.++++.|++.++++++++.|+|+ +..|..+++.+ ++|++|+ .++
T Consensus 356 ~~~~~----~~~~~~~~l~~~~~~~~l~~~~~~~~ivv~d~G~----~~~~~~~~~~~-~~~~~~~-----------~~~ 415 (566)
T PRK07282 356 KNRVR----SYDKKERVVQPQAVIERIGELTNGDAIVVTDVGQ----HQMWAAQYYPY-QNERQLV-----------TSG 415 (566)
T ss_pred HHhch----hccCcCCCcCHHHHHHHHHhhcCCCeEEEECCcH----HHHHHHHhccc-CCCCcEe-----------cCC
Confidence 32211 1111234799999999999999999999999998 66676666664 5555554 357
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
++|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+.. .
T Consensus 416 ~~g~mG~--glpaaiGa~lA~p~~~Vv~i~GDG~f~m~~~eL~Ta~~--~~l~i~~vV~NN~~y~~i~~~q~~------~ 485 (566)
T PRK07282 416 GLGTMGF--GIPAAIGAKIANPDKEVILFVGDGGFQMTNQELAILNI--YKVPIKVVMLNNHSLGMVRQWQES------F 485 (566)
T ss_pred ccccccc--hhhHhheeheecCCCcEEEEEcchhhhccHHHHHHHHH--hCCCeEEEEEeCCCchHHHHHHHH------H
Confidence 8899999 999999999999 9999999999999999999999999 999999999999999999764210 0
Q ss_pred cc-ccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 398 LD-QYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 398 ~~-~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
+. +.... ..++||.++|++||+++.+|++.+||+++|+. +..++|+||||.++++++
T Consensus 486 ~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~-~~~~~p~lIeV~v~~~~~ 545 (566)
T PRK07282 486 YEGRTSESVFDTLPDFQLMAQAYGIKHYKFDNPETLAQDLEV-ITEDVPMLIEVDISRKEH 545 (566)
T ss_pred hCCCcccccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHH-hcCCCCEEEEEEeCCccc
Confidence 11 11111 14689999999999999999999999999985 567999999999997653
|
|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=544.82 Aligned_cols=400 Identities=15% Similarity=0.176 Sum_probs=311.4
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.|+||++.|+++++|||||+||.|.+........ ..+... +.+.+...++++.+++++
T Consensus 154 ~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~--------------~~~~~~----~~~~~~~~~~~~~i~~~~ 215 (587)
T PRK06965 154 DLAETVKKAFYIARTGRPGPVVVDIPKDVSKTPCEYEY--------------PKSVEM----RSYNPVTKGHSGQIRKAV 215 (587)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeChhhhhChhcccc--------------Cccccc----cCCCCCCCCCHHHHHHHH
Confidence 36789999999999999999999999996432221000 000000 000111234667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+||+|+|++ .++.+++.+|+|++|+||++|++ | ||+||++||++ +|.+|..++..++..++
T Consensus 216 ~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~-g------kg~~~~~hpl~--~G~~G~~~~~~a~~~~~ 286 (587)
T PRK06965 216 SLLLSAKRPYIYTGGGVILANASRELRQLADLLGYPVTNTLM-G------LGAYPASDKKF--LGMLGMHGTYEANMAMQ 286 (587)
T ss_pred HHHHhcCCCEEEECCCccccchHHHHHHHHHHhCCCEEEccc-c------CCCCCCCChhh--cCCCCCCCCHHHHHHHH
Confidence 999999999999999987 46678999999999999999997 6 89999999995 78888777777777889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-------CChhH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-------RSSKW 231 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-------~~~~w 231 (983)
+||+||+||+++++..+..+....++ .++||||.|+..++++++.++.+++|++.+|++|++.+... ....|
T Consensus 287 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~ 366 (587)
T PRK06965 287 HCDVLIAIGARFDDRVIGNPAHFASRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQLQTAEHGPDADALAQW 366 (587)
T ss_pred hCCEEEEECCCCcccccCChhhcCCCCceEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhhhccccccccchHHH
Confidence 99999999999976654323222223 47999999999999999999999999999999998866421 12344
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCC
Q 041113 232 CSFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPH 311 (983)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 311 (983)
.+.+...+..... .......++++..+++.|++.+|++++++.|+|+ +..|..+++++ .+|++|+
T Consensus 367 ~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~l~~~l~~d~ii~~d~G~----~~~~~~~~~~~-~~p~~~~------- 431 (587)
T PRK06965 367 WKQIEGWRSRDCL---KYDRESEIIKPQYVVEKLWELTDGDAFVCSDVGQ----HQMWAAQFYRF-NEPRRWI------- 431 (587)
T ss_pred HHHHHHHHHhChh---hccccCCCcCHHHHHHHHHhhCCCCeEEEeCCcH----HHHHHHHhccc-CCCCeEE-------
Confidence 4433322211100 0001234699999999999999999999999998 66777777664 5666555
Q ss_pred cceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 312 QWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 312 ~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
.++++|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|++| |++|+++||+||++|+++++.+..
T Consensus 432 ----~~~~~gsmG~--glpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~eL~Ta~r--~~lpviivV~NN~~~~~i~~~q~~ 503 (587)
T PRK06965 432 ----NSGGLGTMGV--GLPYAMGIKMAHPDDDVVCITGEGSIQMCIQELSTCLQ--YDTPVKIISLNNRYLGMVRQWQEI 503 (587)
T ss_pred ----cCCCcccccc--hHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHH--cCCCeEEEEEECCcchHHHHHHHH
Confidence 3578899999 999999999999 9999999999999999999999999 999999999999999999764211
Q ss_pred CCCCccccccccccC--CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-cCCCEEEEEEcCcccc
Q 041113 391 DRTEPRILDQYFYTT--HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-LGTDRVIEVESCIDAN 455 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~--~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-~~~p~lIeV~~~~~~~ 455 (983)
.. ..++..+. .++||.++|++||+++++|++.+||+++|+++++ .++|+||||.+++++.
T Consensus 504 ~~-----~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lieV~i~~~~~ 566 (587)
T PRK06965 504 EY-----SKRYSHSYMDALPDFVKLAEAYGHVGMRIEKTSDVEPALREALRLKDRTVFLDFQTDPTEN 566 (587)
T ss_pred hc-----CCCccccCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence 10 11111111 3589999999999999999999999999999987 4899999999997664
|
|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-57 Score=538.58 Aligned_cols=399 Identities=15% Similarity=0.214 Sum_probs=314.5
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|++|++.|+++|+|||||+||.|.+..+.... +. ..... ....+...++++.+++++
T Consensus 147 ~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~~~~~~~~-----------~~---~~~~~----~~~~~~~~~~~~~~~~~~ 208 (570)
T PRK06725 147 QLSRIVQEAFYIAESGRPGPVLIDIPKDVQNEKVTSF-----------YN---EVVEI----PGYKPEPRPDSMKLREVA 208 (570)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEccccchhhcccccc-----------cC---ccccc----ccCCCCCCCCHHHHHHHH
Confidence 3688999999999999999999999999643221100 00 00000 000012245667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+|++ .++.++|.+|||++|+||++|++ | ||+||++||++ +|.+|..++...+..++
T Consensus 209 ~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~PV~tt~~-~------kg~~p~~hp~~--~G~~G~~~~~~~~~~l~ 279 (570)
T PRK06725 209 KAISKAKRPLLYIGGGVIHSGGSEELIEFARENRIPVVSTLM-G------LGAYPPGDPLF--LGMLGMHGTYAANMAVT 279 (570)
T ss_pred HHHHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEEECCc-c------CcCCCCCChhh--cCCCCCCCCHHHHHHHH
Confidence 999999999999999986 45678999999999999999997 6 89999999996 78888777777777889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 239 (983)
+|||||+||+++++..+..+....+..++||||.|+..++++++.++.|.+|++.+|++|.+.+.......|.+.+...+
T Consensus 280 ~aDlil~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 359 (570)
T PRK06725 280 ECDLLLALGVRFDDRVTGKLELFSPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMSIHTQTDEWLQKVKTWK 359 (570)
T ss_pred hCCEEEEeCCCCCccccCcccccCCCCeEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhccccCcHHHHHHHHHHH
Confidence 99999999999977665433222223469999999999999999999999999999999988765433455665554433
Q ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
........ ....++++..+++.|++.+|++++++.|+|+ +..|..+++.+ .+|++|+ .+++
T Consensus 360 ~~~~~~~~---~~~~~l~~~~~~~~l~~~l~~d~iiv~d~g~----~~~~~~~~~~~-~~p~~~~-----------~~~~ 420 (570)
T PRK06725 360 EEYPLSYK---QKESELKPQHVINLVSELTNGEAIVTTEVGQ----HQMWAAHFYKA-KNPRTFL-----------TSGG 420 (570)
T ss_pred HhChhhhc---ccCCCcCHHHHHHHHHhhCCCCcEEEeCCcH----HHHHHHHhccc-cCCCeEE-----------ccCC
Confidence 32111111 1235799999999999999999999999998 66666666654 5555544 3578
Q ss_pred CCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 320 RGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
+|+||| |+|+|||+++|. +++||+++|||||+|++|||+|+++ |++|+++||+||++|++++..+.. .+
T Consensus 421 ~gsmG~--~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~Ta~~--~~lpi~~vV~NN~~~~~~~~~q~~------~~ 490 (570)
T PRK06725 421 LGTMGF--GFPAAIGAQLAKEEELVICIAGDASFQMNIQELQTIAE--NNIPVKVFIINNKFLGMVRQWQEM------FY 490 (570)
T ss_pred cccccc--hhhHHHhhHhhcCCCeEEEEEecchhhccHHHHHHHHH--hCCCeEEEEEECCccHHHHHHHHH------hc
Confidence 899999 999999999999 9999999999999999999999999 999999999999999998753211 11
Q ss_pred c-ccccc-CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 399 D-QYFYT-THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 399 ~-~~~~~-~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
+ ++... ..++||.++|++||+++.+|++.+||.++|+++++.++|+||||.+++++.
T Consensus 491 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~~p~liev~id~~~~ 549 (570)
T PRK06725 491 ENRLSESKIGSPDFVKVAEAYGVKGLRATNSTEAKQVMLEAFAHEGPVVVDFCVEEGEN 549 (570)
T ss_pred CCccccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCccc
Confidence 1 11111 236999999999999999999999999999999999999999999997653
|
|
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-57 Score=540.35 Aligned_cols=399 Identities=17% Similarity=0.179 Sum_probs=313.5
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|+||++.|++++||||||+||.|.+....... .+... ....+.+...++++.+++++
T Consensus 140 ~i~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~~----------------~~~~~--~~~~~~~~~~~~~~~i~~~a 201 (561)
T PRK06048 140 DLPRIIKEAFHIASTGRPGPVLIDLPKDVTTAEIDFD----------------YPDKV--ELRGYKPTYKGNPQQIKRAA 201 (561)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEecChhhhhcccccc----------------cCccc--ccccCCCCCCCCHHHHHHHH
Confidence 3688999999999999999999999998643221100 00000 00000112235667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+|++ .++.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..+...++..++
T Consensus 202 ~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~-~------kg~~~~~hpl~--~G~~g~~~~~~~~~~l~ 272 (561)
T PRK06048 202 ELIMKAERPIIYAGGGVISSNASEELVELAETIPAPVTTTLM-G------IGAIPTEHPLS--LGMLGMHGTKYANYAIQ 272 (561)
T ss_pred HHHHhCCCCEEEECCCcccccHHHHHHHHHHHhCCCEEEccc-c------CccCCCCCccc--cCCCCCCCCHHHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999996 68888777666777889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 239 (983)
+||+||++|+++++..+..+....+..++||||.|+..++++++.++.+.+|++.+|++|++.+.......|.+.+....
T Consensus 273 ~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 352 (561)
T PRK06048 273 ESDLIIAVGARFDDRVTGKLASFAPNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYVQYCDRKEWLDKINQWK 352 (561)
T ss_pred hCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEEeCHHHHHHHHHHhccccCcHHHHHHHHHHH
Confidence 99999999999976665444332333579999999999999999999999999999999998775444456766554433
Q ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
...... ......++++..+++.|++.+| +.+++.|+|+ +..|..+++.+ .+|++|+ .+++
T Consensus 353 ~~~~~~---~~~~~~~l~~~~~~~~l~~~~p-~~iiv~d~g~----~~~~~~~~~~~-~~~~~~~-----------~~~~ 412 (561)
T PRK06048 353 KEYPLK---YKEREDVIKPQYVIEQIYELCP-DAIIVTEVGQ----HQMWAAQYFKY-KYPRTFI-----------TSGG 412 (561)
T ss_pred HhChhh---ccCCCCCcCHHHHHHHHHhhCC-CcEEEEcCcH----HHHHHHHhccc-CCCCeEE-----------eCCC
Confidence 221110 0112457999999999999998 7899999998 56666666654 4554444 3578
Q ss_pred CCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 320 RGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
+|+||| |+|+|||+++|+ +++||+++|||||+|++|||+|++| |++|+++||+||++|++++..+... ..
T Consensus 413 ~g~mG~--glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~--~~l~i~~vV~NN~~y~~i~~~~~~~-----~~ 483 (561)
T PRK06048 413 LGTMGY--GFPAAIGAKVGKPDKTVIDIAGDGSFQMNSQELATAVQ--NDIPVIVAILNNGYLGMVRQWQELF-----YD 483 (561)
T ss_pred cccccc--HHHHHHHHHHhCCCCcEEEEEeCchhhccHHHHHHHHH--cCCCeEEEEEECCccHHHHHHHHHH-----cC
Confidence 899999 999999999999 8999999999999999999999999 9999999999999999987532100 01
Q ss_pred ccccccC--CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 399 DQYFYTT--HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 399 ~~~~~~~--~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
.++..+. +++||.++|++||+++.+|++.+||+++|+++++.++|+||||.++++++
T Consensus 484 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~t~~el~~al~~a~~~~~p~liev~~~~~~~ 542 (561)
T PRK06048 484 KRYSHTCIKGSVDFVKLAEAYGALGLRVEKPSEVRPAIEEAVASDRPVVIDFIVECEEN 542 (561)
T ss_pred CcccccCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCccc
Confidence 1111221 57999999999999999999999999999999999999999999997664
|
|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-57 Score=545.91 Aligned_cols=400 Identities=17% Similarity=0.195 Sum_probs=312.2
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|++|++.|++++||||||+||.|.+....... ...+... ......+.+.++++.+++++
T Consensus 155 ~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv~~~~~~~~--------------~~~~~~~--~~~~~~~~~~~~~~~v~~~~ 218 (616)
T PRK07418 155 DMARIVAEAFHIASSGRPGPVLIDIPKDVGQEEFDYV--------------PVEPGSV--KPPGYRPTVKGNPRQINAAL 218 (616)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEecchhhhhchhccc--------------ccCcccc--ccCCCCCCCCCCHHHHHHHH
Confidence 4789999999999999999999999998643221100 0000000 00000011345677899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+|++ .++.++|++|||++|+||++|++ | ||+||++||++ +|.+|..++..++..++
T Consensus 219 ~~L~~AkrPvI~~G~g~~~~~a~~~l~~lae~l~~pV~tt~~-g------kg~~p~~hpl~--~G~~G~~g~~~~~~~l~ 289 (616)
T PRK07418 219 KLIEEAERPLLYVGGGAISAGAHAELKELAERFQIPVTTTLM-G------KGAFDEHHPLS--VGMLGMHGTAYANFAVT 289 (616)
T ss_pred HHHHhCCCCEEEECCCcCcccHHHHHHHHHHHHCCCEEEccC-C------CcCCCCCCccc--ccCCCCCCCHHHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999996 78888777777777889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCC----ChhHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHR----SSKWCSFL 235 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~----~~~w~~~~ 235 (983)
+||+||+||+++++..+..+....+..++||||.|+..+++++..++.|.+|++.+|++|++.+.... ...|.+.+
T Consensus 290 ~aDlvL~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 369 (616)
T PRK07418 290 ECDLLIAVGARFDDRVTGKLDEFASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERSLEPTTPPRTQAWLERI 369 (616)
T ss_pred hCCEEEEEcCCCCccccCChhhcCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhhhccccccchHHHHHHH
Confidence 99999999999976655433222223479999999999999999999999999999999998774322 34565554
Q ss_pred HHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCccee
Q 041113 236 RALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIR 315 (983)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 315 (983)
+..+..... .......++++.+++++|++.++ +++++.|.|+ +..|..+++. .+|++|+
T Consensus 370 ~~~~~~~~~---~~~~~~~~l~~~~v~~~l~~~~~-d~i~~~D~G~----~~~~~~~~~~--~~p~~~~----------- 428 (616)
T PRK07418 370 NRWKQDYPL---VVPPYEGEIYPQEVLLAVRDLAP-DAYYTTDVGQ----HQMWAAQFLR--NGPRRWI----------- 428 (616)
T ss_pred HHHHHhCcc---cccCCCCCcCHHHHHHHHHhhCC-CcEEEECChH----HHHHHHHhhh--cCCCeEE-----------
Confidence 433322110 00112457999999999999998 5899999998 6777766554 2344333
Q ss_pred EeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCC
Q 041113 316 VAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTE 394 (983)
Q Consensus 316 ~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~ 394 (983)
.++++|+||| |+|+||||++|. +|+||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+...
T Consensus 429 ~s~~~g~mG~--glpaAiGA~lA~p~r~Vv~i~GDG~f~m~~~eL~Ta~r--~~lpvi~vV~NN~~~g~i~~~q~~~--- 501 (616)
T PRK07418 429 SSAGLGTMGF--GMPAAMGVKVALPDEEVICIAGDASFLMNIQELGTLAQ--YGINVKTVIINNGWQGMVRQWQESF--- 501 (616)
T ss_pred cCCCcccccc--HHHHHHHHHHhCCCCcEEEEEcchHhhhhHHHHHHHHH--hCCCeEEEEEECCcchHHHHHHHHh---
Confidence 4678999999 999999999999 9999999999999999999999999 9999999999999999987542110
Q ss_pred ccccccccccC---CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 395 PRILDQYFYTT---HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 395 ~~~~~~~~~~~---~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
...++..+. +.+||+++|++||+++++|++++||+++|+++++.++|+||||.++++++
T Consensus 502 --~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V~~~~el~~al~~a~~~~~p~lIeV~i~~~~~ 563 (616)
T PRK07418 502 --YGERYSASNMEPGMPDFVKLAEAFGVKGMVISERDQLKDAIAEALAHDGPVLIDVHVRRDEN 563 (616)
T ss_pred --cCCCceeecCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCccc
Confidence 011122221 35899999999999999999999999999999999999999999997664
|
|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-57 Score=541.32 Aligned_cols=404 Identities=15% Similarity=0.168 Sum_probs=310.9
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++++||++.|+++|||||||+||.|.+......... .+... ......+...++.+.+++++
T Consensus 137 ~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~--------------~~~~~--~~~~~~~~~~~~~~~i~~~~ 200 (574)
T PRK06466 137 EIPEIIKKAFYIAQSGRPGPVVVDIPKDMTNPAEKFEYE--------------YPKKV--KLRSYSPAVRGHSGQIRKAV 200 (574)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCHhHhhhhhccccc--------------cCccc--ccccCCCCCCCCHHHHHHHH
Confidence 367899999999999999999999999953211100000 00000 00000011234566799999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|.+||||+||+|+|++ .++.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..++...+..++
T Consensus 201 ~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~-~------kg~~~~~hp~~--~G~~G~~~~~~~~~~l~ 271 (574)
T PRK06466 201 EMLLAAKRPVIYSGGGVVLGNASALLTELAHLLNLPVTNTLM-G------LGGFPGTDRQF--LGMLGMHGTYEANMAMH 271 (574)
T ss_pred HHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEcCc-c------CCCCCCCChhh--cCCCccccCHHHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999996 78888777666767889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-------CChhHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-------RSSKWC 232 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-------~~~~w~ 232 (983)
+||+||++|+++++..+..|....+..++||||.|+..++++++.++.+.+|++.+|++|.+.+... ....|.
T Consensus 272 ~aD~il~vG~~~~~~~~~~~~~~~~~~~vi~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 351 (574)
T PRK06466 272 HADVILAVGARFDDRVTNGPAKFCPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAILKEIGEKPDKEALAAWW 351 (574)
T ss_pred hCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhCCccCCCeEEecCHHHHHHHHHHHhhhhcccccccchHHHH
Confidence 9999999999998766554433333347999999999999999999999999999999998866321 112454
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCc
Q 041113 233 SFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQ 312 (983)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 312 (983)
+.+...+..... .......+.++++.++++.|++.+|++.+++.|.|+ +..|..+++.+ .+|++|+
T Consensus 352 ~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~l~~~l~~~~iv~~d~g~----~~~~~~~~~~~-~~p~~~~-------- 417 (574)
T PRK06466 352 KQIDEWRGRHGL-FPYDKGDGGIIKPQQVVETLYEVTNGDAYVTSDVGQ----HQMFAAQYYKF-NKPNRWI-------- 417 (574)
T ss_pred HHHHHHHHhCcc-hhcccCCCCCcCHHHHHHHHHhhCCCCeEEEECCcH----HHHHHHHhccc-cCCCcEE--------
Confidence 444332221100 000011234699999999999999999999999998 66677666664 5555554
Q ss_pred ceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC
Q 041113 313 WIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD 391 (983)
Q Consensus 313 ~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~ 391 (983)
.++++|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+...
T Consensus 418 ---~~~~~gsmG~--glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~r--~~lpv~ivV~NN~~y~~i~~~q~~~ 490 (574)
T PRK06466 418 ---NSGGLGTMGF--GLPAAMGVKLAFPDQDVACVTGEGSIQMNIQELSTCLQ--YGLPVKIINLNNGALGMVRQWQDMQ 490 (574)
T ss_pred ---cCCCcchhhc--hHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHH--hCCCeEEEEEeCCccHHHHHHHHHh
Confidence 3578899999 999999999999 9999999999999999999999999 9999999999999999997642110
Q ss_pred CCCcccccccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-CCCEEEEEEcCcccc
Q 041113 392 RTEPRILDQYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-GTDRVIEVESCIDAN 455 (983)
Q Consensus 392 ~~~~~~~~~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-~~p~lIeV~~~~~~~ 455 (983)
. ..++..+ ...+||.++|++||+++.+|++.+||+++|+++++. ++|+||||.+++++.
T Consensus 491 ~-----~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~p~lIev~i~~~~~ 552 (574)
T PRK06466 491 Y-----EGRHSHSYMESLPDFVKLAEAYGHVGIRITDLKDLKPKLEEAFAMKDRLVFIDIYVDRSEH 552 (574)
T ss_pred c-----CCceeecCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEeCCccc
Confidence 0 0111111 235899999999999999999999999999999985 999999999997553
|
|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-57 Score=539.71 Aligned_cols=392 Identities=18% Similarity=0.222 Sum_probs=313.4
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++.+++||++.|++++||||||+||.|++..+.... .+.... . ....++++.+++++
T Consensus 133 ~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~~----------------~~~~~~---~---~~~~~~~~~l~~~~ 190 (548)
T PRK08978 133 ELPEIMAEAFEIASSGRPGPVLVDIPKDIQLAEGELE----------------PHLTTV---E---NEPAFPAAELEQAR 190 (548)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEecChhhhhcccccc----------------cccccc---C---CCCCCCHHHHHHHH
Confidence 3688999999999999999999999999654332100 000000 0 11235667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|.|+. .++.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..+...++..++
T Consensus 191 ~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~-g------kg~~~~~hp~~--~G~~g~~~~~~~~~~l~ 261 (548)
T PRK08978 191 ALLAQAKKPVLYVGGGVGMAGAVPALREFLAATGMPAVATLK-G------LGAVEADHPYY--LGMLGMHGTKAANLAVQ 261 (548)
T ss_pred HHHHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEccc-c------CCCCCCCCccc--cCCCCCCCCHHHHHHHH
Confidence 999999999999999986 45678999999999999999997 6 89999999996 78888766666777889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRAL 238 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~ 238 (983)
+||+||++|+++++..+. +...+.+ .++||||.|+..+++++..++.|.+|++.++++|.+.+. ...|.+.+...
T Consensus 262 ~aD~vl~lG~~~~~~~~~-~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~~~---~~~~~~~~~~~ 337 (548)
T PRK08978 262 ECDLLIAVGARFDDRVTG-KLNTFAPHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPALQQPLN---IDAWRQHCAQL 337 (548)
T ss_pred hCCEEEEEcCCCCccccC-CccccCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc---chHHHHHHHHH
Confidence 999999999998765543 3222333 479999999999999999999999999999999987652 34577666544
Q ss_pred HHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEee
Q 041113 239 DMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAG 318 (983)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 318 (983)
+....... .....++++..++++|++.++++++++.|.|+ +..|...++.+ ++|++|+ .++
T Consensus 338 ~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~iiv~d~g~----~~~~~~~~~~~-~~~~~~~-----------~~~ 398 (548)
T PRK08978 338 RAEHAWRY---DHPGEAIYAPALLKQLSDRKPADTVVTTDVGQ----HQMWVAQHMRF-TRPENFI-----------TSS 398 (548)
T ss_pred HHhCchhc---cCCCCCcCHHHHHHHHHHhCCCCcEEEecCcH----HHHHHHHhccc-CCCCeEE-----------eCC
Confidence 33221111 11234699999999999999999999999998 66676666654 5565554 357
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
++|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|+++ |++|+++||+||++|++++..+... .
T Consensus 399 ~~g~mG~--glpaAiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~--~~l~v~ivV~NN~~~~~~~~~~~~~-----~ 469 (548)
T PRK08978 399 GLGTMGF--GLPAAIGAQVARPDDTVICVSGDGSFMMNVQELGTIKR--KQLPVKIVLLDNQRLGMVRQWQQLF-----F 469 (548)
T ss_pred chhhhhc--hHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHH--hCCCeEEEEEeCCccHHHHHHHHHH-----h
Confidence 8899999 999999999999 9999999999999999999999999 9999999999999999997642110 0
Q ss_pred ccccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 398 LDQYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 398 ~~~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
..++..+ .+++||.++|++||+++++|++.+||+++|+++++.++|.||||.+++++.
T Consensus 470 ~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~id~~~~ 529 (548)
T PRK08978 470 DERYSETDLSDNPDFVMLASAFGIPGQTITRKDQVEAALDTLLNSEGPYLLHVSIDELEN 529 (548)
T ss_pred CCcceecCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCccc
Confidence 1122222 246999999999999999999999999999999999999999999998664
|
|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-57 Score=540.50 Aligned_cols=402 Identities=15% Similarity=0.191 Sum_probs=310.2
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
++++|+||++.|+++|+|||||+||.|++..+.... . ........ ..+.++++.++++++
T Consensus 139 ~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~--~-------------~~~~~~~~-----~~~~~~~~~i~~~~~ 198 (591)
T PRK11269 139 VPRVFQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFD--P-------------DTYEPLPV-----YKPAATRAQIEKALE 198 (591)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEeChhhhhcccccc--c-------------cccccccc-----CCCCCCHHHHHHHHH
Confidence 678999999999999999999999999644332100 0 00000000 012346678999999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhh-ccCccccccC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHA-LLSESVKDWI 159 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~-~~~~~~~~~~ 159 (983)
+|++||||+||+|+|+. .++.+++.+|||++|+||++|++ | ||+||++||++ +|.+|.. +...++..++
T Consensus 199 ~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~PV~tt~~-g------kg~~p~~hpl~--~G~~g~~~~~~~~~~~~~ 269 (591)
T PRK11269 199 MLNAAERPLIVAGGGVINADASDLLVEFAELTGVPVIPTLM-G------WGAIPDDHPLM--AGMVGLQTSHRYGNATLL 269 (591)
T ss_pred HHHhCCCcEEEECCCCcccCHHHHHHHHHHHhCCCeEeccc-c------cCcCCCCChhh--ccCCcCCCCcHHHHHHHH
Confidence 99999999999999986 45678999999999999999996 7 89999999996 7888754 3444556788
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC-------CCChhHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP-------HRSSKWC 232 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~-------~~~~~w~ 232 (983)
+||+||+||+++++..+.+|....+..++||||+|+..++++++.++.+++|++.+|++|.+.+.. .....|.
T Consensus 270 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~Vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 349 (591)
T PRK11269 270 ASDFVLGIGNRWANRHTGSVEVYTKGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVAREWKAAGRLPDRSAWV 349 (591)
T ss_pred hCCEEEEeCCCCCccccCchhhcCCCCeEEEeeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHHhhhhcccccccchHHHH
Confidence 999999999999876664443322334799999999999999999999999999999999886632 1224566
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCc
Q 041113 233 SFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQ 312 (983)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 312 (983)
+.+...+....... ...+.++++..+++.|++.+|++++++.|.|+ +..|..+++++ .+|++|+
T Consensus 350 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~l~~~l~~d~ivv~d~g~----~~~~~~~~~~~-~~p~~~~-------- 413 (591)
T PRK11269 350 ADCQERKRTLLRKT---HFDNVPIKPQRVYEEMNKAFGRDTCYVSTIGL----SQIAAAQFLHV-YKPRHWI-------- 413 (591)
T ss_pred HHHHHHHHhchhhc---cCCCCCcCHHHHHHHHHHhcCCCcEEEECCcH----HHHHHHHhccc-CCCCcEE--------
Confidence 55544433221110 11234699999999999999999999999988 66676666654 4555443
Q ss_pred ceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC
Q 041113 313 WIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD 391 (983)
Q Consensus 313 ~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~ 391 (983)
.++++|+||| |+|+|||+++|. +++||+++|||||+|++|||+|++| |++|+++||+||++||+++..+...
T Consensus 414 ---~~~~~G~mG~--glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~~--~~lpv~~vV~NN~~~g~i~~~~~~~ 486 (591)
T PRK11269 414 ---NCGQAGPLGW--TIPAALGVRAADPDRNVVALSGDYDFQFLIEELAVGAQ--FNLPYIHVLVNNAYLGLIRQAQRAF 486 (591)
T ss_pred ---eCCccccccc--hhhhHHhhhhhCCCCcEEEEEccchhhcCHHHHHHHHH--hCCCeEEEEEeCCchhHHHHHHHHh
Confidence 3577899999 999999999999 9999999999999999999999999 9999999999999999997653210
Q ss_pred CCC---ccccccccc---cCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc----cCCCEEEEEEcCcccc
Q 041113 392 RTE---PRILDQYFY---TTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH----LGTDRVIEVESCIDAN 455 (983)
Q Consensus 392 ~~~---~~~~~~~~~---~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~----~~~p~lIeV~~~~~~~ 455 (983)
... ...++.... ..+++||+++|++||+++.+|++.+||+++|+++++ .++|+||||.++++..
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~~~~gp~lieV~v~~~~~ 560 (591)
T PRK11269 487 DMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVFKPEDIAPALEQAKALMAEFRVPVVVEVILERVTN 560 (591)
T ss_pred ccCccceeeccccccccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEeccccC
Confidence 000 000111000 114699999999999999999999999999999984 7899999999998764
|
|
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-57 Score=537.39 Aligned_cols=401 Identities=17% Similarity=0.174 Sum_probs=314.3
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|++|++.|++++||||||+||.|.+..+.... .+... ..+...+...++++.+++++
T Consensus 136 ~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv~~~~~~~~----------------~~~~~--~~~~~~~~~~~~~~~i~~~~ 197 (563)
T PRK08527 136 ELPRILKEAFYIARSGRPGPVHIDIPKDVTATLGEFE----------------YPKEI--SLKTYKPTYKGNSRQIKKAA 197 (563)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCHhHhhhhhccc----------------ccccc--ccccCCCCCCCCHHHHHHHH
Confidence 3688999999999999999999999999643221000 00000 00000011234567899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|.+||||+|++|+|++ .++.++|++|+|++++||++|++ | ||+||++||++ +|.+|..++...+..+.
T Consensus 198 ~~L~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pV~tt~~-~------kg~~~~~hpl~--~G~~g~~~~~~~~~~l~ 268 (563)
T PRK08527 198 EAIKEAKKPLFYLGGGAILSNASEEIRELVKKTGIPAVETLM-A------RGVLRSDDPLL--LGMLGMHGSYAANMAMS 268 (563)
T ss_pred HHHHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEccc-c------CCCCCCCChhh--cCCCcccCCHHHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999996 78888777777777889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC---CChhHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH---RSSKWCSFLR 236 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~---~~~~w~~~~~ 236 (983)
+||+||+||+++++..+..|....+..++||||.|+..++++++.++.+.+|++.+|++|++.+... ....|.+.+.
T Consensus 269 ~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 348 (563)
T PRK08527 269 ECDLLISLGARFDDRVTGKLSEFAKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEELKEENPTTYKEWREILK 348 (563)
T ss_pred hCCEEEEeCCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhhhccccchHHHHHHHH
Confidence 9999999999997766544433333347999999999999999999999999999999999876432 2245665544
Q ss_pred HHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeE
Q 041113 237 ALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRV 316 (983)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 316 (983)
..+..... ......+++++.++++.|++.+|++++++.|+|+ +..|..+++.+ .+|++|+ .
T Consensus 349 ~~~~~~~~---~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~g~----~~~~~~~~~~~-~~~~~~~-----------~ 409 (563)
T PRK08527 349 RYNELHPL---SYEDSDEVLKPQWVIERVGELLGDDAIISTDVGQ----HQMWVAQFYPF-NYPRQLA-----------T 409 (563)
T ss_pred HHHHhCcc---cccCCCCCcCHHHHHHHHHhhCCCCeEEEECCcH----HHHHHHHhccc-CCCCeEE-----------c
Confidence 33221110 0011235799999999999999999999999998 66676666554 4555544 3
Q ss_pred eecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCc
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEP 395 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~ 395 (983)
++++|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|+++ |++|+++||+||++|++++..+...
T Consensus 410 ~~~~g~mG~--~l~~aiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~--~~lpvi~vV~NN~~~~~i~~~~~~~---- 481 (563)
T PRK08527 410 SGGLGTMGY--GLPAALGAKLAVPDKVVINFTGDGSILMNIQELMTAVE--YKIPVINIILNNNFLGMVRQWQTFF---- 481 (563)
T ss_pred CCCcccccc--hHHHHHHHHHhCCCCcEEEEecCchhcccHHHHHHHHH--hCCCeEEEEEECCcchhHHHHHHhh----
Confidence 688899999 999999999999 8999999999999999999999999 9999999999999999997642110
Q ss_pred cccccccccC--CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccch
Q 041113 396 RILDQYFYTT--HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANA 456 (983)
Q Consensus 396 ~~~~~~~~~~--~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~ 456 (983)
...++..+. +++||.++|++||+++++|++.+||+++|+++++.++|+||||.+++.++.
T Consensus 482 -~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~lieV~v~~~~~~ 543 (563)
T PRK08527 482 -YEERYSETDLSTQPDFVKLAESFGGIGFRVTTKEEFDKALKEALESDKVALIDVKIDRFENV 543 (563)
T ss_pred -cCCceeeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEECCcccc
Confidence 001111221 358999999999999999999999999999999999999999999986643
|
|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-56 Score=538.30 Aligned_cols=404 Identities=16% Similarity=0.183 Sum_probs=311.8
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|++|++.|.++|+|||||+||.|.+....... |.. ..+...... . ....++++.+++++
T Consensus 146 ~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~~~~~~~~-----------~~~-~~~~~~~~~-~---~~~~~~~~~i~~~~ 209 (585)
T PLN02470 146 DIPRVIREAFFLASSGRPGPVLVDIPKDIQQQLAVPN-----------WNQ-PMKLPGYLS-R---LPKPPEKSQLEQIV 209 (585)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEecCchhhhhcccc-----------ccc-cccccccCC-C---CCCCCCHHHHHHHH
Confidence 3788999999999999999999999999643221100 000 000000000 0 01234567899999
Q ss_pred HHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 81 ELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
++|++||||+|++|+|+. .+.+++.+|+|++++||++|++ | ||+||++||++ +|.+|..+...++..+++
T Consensus 210 ~~L~~A~rPvI~~G~g~~-~a~~~l~~lae~~~~pv~tt~~-g------kg~~~~~hpl~--~G~~G~~~~~~~~~~~~~ 279 (585)
T PLN02470 210 RLISESKRPVVYVGGGCL-NSSEELREFVELTGIPVASTLM-G------LGAFPASDELS--LQMLGMHGTVYANYAVDS 279 (585)
T ss_pred HHHHcCCCCEEEECCChh-hhHHHHHHHHHHhCCCEEEccC-c------cccCCCCCccc--ccCCCCCCCHHHHHHHHh
Confidence 999999999999999986 4567999999999999999997 6 89999999996 678887777677778899
Q ss_pred CCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-----CChhHHHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-----RSSKWCSFL 235 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-----~~~~w~~~~ 235 (983)
||+||+||+++++..+..+....+..++||||+|+..++++++.++.|++|++.+|++|++.+... ....|.+.+
T Consensus 280 aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~ 359 (585)
T PLN02470 280 ADLLLAFGVRFDDRVTGKLEAFASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLLEERKAKRPDFSAWRAEL 359 (585)
T ss_pred CCEEEEECCCCcccccCChhhcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhhhccccccchHHHHHHH
Confidence 999999999997665543333223346999999999999999999999999999999998876432 124565544
Q ss_pred HHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCccee
Q 041113 236 RALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIR 315 (983)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 315 (983)
.+.+.+..... .....++++..+++.|++.+|++.+++.|.|+ +..|..+++.+ .+|++|+
T Consensus 360 ~~~~~~~~~~~---~~~~~~l~~~~~~~~l~~~~~~d~iv~~d~G~----~~~~~~~~~~~-~~p~~~~----------- 420 (585)
T PLN02470 360 DEQKEKFPLSY---PTFGDAIPPQYAIQVLDELTDGNAIISTGVGQ----HQMWAAQWYKY-KEPRRWL----------- 420 (585)
T ss_pred HHHHHhChhcc---cCCCCCcCHHHHHHHHHhhCCCCEEEEECCcH----HHHHHHHhccc-CCCCeEE-----------
Confidence 43322211110 01124799999999999999999999999998 67777777664 5555554
Q ss_pred EeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCC
Q 041113 316 VAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTE 394 (983)
Q Consensus 316 ~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~ 394 (983)
.++++|+||| |+|+|||+++|+ +++||+|+|||||+|++|||+|++| |++|+++||+||++|+++++.+.....
T Consensus 421 ~~~~~g~mG~--glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~--~~l~v~ivV~NN~~yg~i~~~~~~~~~- 495 (585)
T PLN02470 421 TSGGLGAMGF--GLPAAIGAAAANPDAIVVDIDGDGSFIMNIQELATIHV--ENLPVKIMVLNNQHLGMVVQWEDRFYK- 495 (585)
T ss_pred cCCccccccc--hHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHH--hCCCeEEEEEeCCcchHHHHHHHHHhC-
Confidence 3588899999 999999999999 9999999999999999999999999 999999999999999998754211000
Q ss_pred ccccccccccC-----CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 395 PRILDQYFYTT-----HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 395 ~~~~~~~~~~~-----~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
.......+..+ ..+||+++|++||+++.+|++.+||+++|+++++.++|+||||.+++++
T Consensus 496 ~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lieV~i~~~~ 560 (585)
T PLN02470 496 ANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVTRKSDLREAIQKMLDTPGPYLLDVIVPHQE 560 (585)
T ss_pred CceeeeecCccccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEeCCcc
Confidence 00011111111 2389999999999999999999999999999999999999999999755
|
|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=536.16 Aligned_cols=399 Identities=16% Similarity=0.208 Sum_probs=315.8
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++..+++|++.|+++|+|||||+||.|++..+.... ..+.... . . +...++++.+++++
T Consensus 146 ~~~~~i~~A~~~a~~~~~GPV~i~iP~Dv~~~~~~~~---------------~~~~~~~-~-~---~~~~~~~~~i~~~~ 205 (564)
T PRK08155 146 ELPQVISDAFRIAQSGRPGPVWIDIPKDVQTAVIELE---------------ALPAPAE-K-D---AAPAFDEESIRDAA 205 (564)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCHhHHhhhcccc---------------cCCCccc-c-C---CCCCCCHHHHHHHH
Confidence 3678999999999999999999999999643332100 0010000 0 0 11234566899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+||+|+|++ .++.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..+....+..++
T Consensus 206 ~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~-~------kg~i~~~hp~~--~G~~g~~~~~~~~~~l~ 276 (564)
T PRK08155 206 AMINAAKRPVLYLGGGVINSGAPARARELAEKAQLPTTMTLM-A------LGMLPKAHPLS--LGMLGMHGARSTNYILQ 276 (564)
T ss_pred HHHHhCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEccc-c------cccCCCCChhh--ccCCCCCCCHHHHHHHH
Confidence 999999999999999986 45678999999999999999997 6 89999999996 78888766666667789
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 239 (983)
+||+||++|+++.+..+..+....+..++||||.|+..++++++.++.+.+|++.+|++|++.+.......|.+.+...+
T Consensus 277 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 356 (564)
T PRK08155 277 EADLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLVEAQPRAEWHQLVADLQ 356 (564)
T ss_pred hCCEEEEECCCCCccccCCHhhcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 99999999999987765444333334579999999999999999999999999999999988765444456766554443
Q ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
+...... ...+.++++..+++.|++.+|++.+++.|+|+ +..|..+++++ .+|++|+ .+++
T Consensus 357 ~~~~~~~---~~~~~~l~~~~v~~~l~~~l~~~~iv~~D~G~----~~~~~~~~~~~-~~~~~~~-----------~~~~ 417 (564)
T PRK08155 357 REFPCPI---PKADDPLSHYGLINAVAACVDDNAIITTDVGQ----HQMWTAQAYPL-NRPRQWL-----------TSGG 417 (564)
T ss_pred HhChhhc---ccCCCCcCHHHHHHHHHHhCCCCeEEEECCch----HHHHHHHhccc-cCCCeEE-----------eCCC
Confidence 3221111 11234799999999999999999999999998 66666666664 4555444 3578
Q ss_pred CCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 320 RGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
+|+||| |+|+|||+++|. +++||+++|||||+|++|||+|+++ |++|+++||+||++|++++..+.. ...
T Consensus 418 ~g~mG~--~lpaaiGa~la~~~~~vv~i~GDGsf~~~~~eL~ta~~--~~lpvi~vV~NN~~~g~~~~~q~~-----~~~ 488 (564)
T PRK08155 418 LGTMGF--GLPAAIGAALANPERKVLCFSGDGSLMMNIQEMATAAE--NQLDVKIILMNNEALGLVHQQQSL-----FYG 488 (564)
T ss_pred cccccc--hhHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHH--hCCCeEEEEEeCCcccccHHHHHH-----hcC
Confidence 899999 999999999999 8999999999999999999999999 999999999999999998753211 011
Q ss_pred cccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccch
Q 041113 399 DQYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANA 456 (983)
Q Consensus 399 ~~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~ 456 (983)
.+++.. ..++||.++|++||+++.+|++.+||.++|+++++.++|+||||.+++++..
T Consensus 489 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~~~~~~~~ 548 (564)
T PRK08155 489 QRVFAATYPGKINFMQIAAGFGLETCDLNNEADPQAALQEAINRPGPALIHVRIDAEEKV 548 (564)
T ss_pred CCeeeccCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCCccc
Confidence 222222 2469999999999999999999999999999999999999999999976543
|
|
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-56 Score=533.11 Aligned_cols=398 Identities=16% Similarity=0.153 Sum_probs=312.2
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.++||++.|++++||||||+||.|++..+.... ..+ ... . . +...++++.+++++
T Consensus 131 ~~~~~~~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~---------------~~~-~~~-~-~---~~~~~~~~~i~~~~ 189 (539)
T TIGR02418 131 ALSEVVANAFRAAESGKPGAAFVSLPQDVVDSPVSVK---------------AIP-ASY-A-P---KLGAAPDDAIDEVA 189 (539)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcChhHhhCccccc---------------ccC-ccc-C-C---CCCCCCHHHHHHHH
Confidence 3678899999999999999999999999643322110 000 000 0 0 11223556799999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhc-cccccccchhhhccCcccccc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETE-QNILFLDHLDHALLSESVKDW 158 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~h-p~~~~~g~~g~~~~~~~~~~~ 158 (983)
++|++||||+|++|.|++ .++.+++++|||++|+||++|++ | ||+||++| |++ +|++|..+....+..+
T Consensus 190 ~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv~tt~~-g------kg~i~~~~~~~~--~G~~G~~~~~~~~~~~ 260 (539)
T TIGR02418 190 EAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPVVETFQ-G------AGAVSRELEDHF--FGRVGLFRNQPGDRLL 260 (539)
T ss_pred HHHHcCCCCEEEECCCcCcccHHHHHHHHHHHhCCCEEEccc-c------CcCCCCCCChhh--cccCcCCCcHHHHHHH
Confidence 999999999999999987 45678999999999999999986 7 89999997 664 7888877766677788
Q ss_pred CCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCC----ChhHHHH
Q 041113 159 IQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHR----SSKWCSF 234 (983)
Q Consensus 159 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~----~~~w~~~ 234 (983)
++||+||++|+++.+..+..|... .+.++||||.|+..++++++.++.|.+|++.+|++|.+.+.... ...|.+.
T Consensus 261 ~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~ 339 (539)
T TIGR02418 261 KQADLVITIGYDPIEYEPRNWNSE-NDATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERIPGYELPPDALAILED 339 (539)
T ss_pred HhCCEEEEecCcccccCccccCcC-CCCeEEEEeCChHHcCCccCCCeEEecCHHHHHHHHHHhhccccCccchHHHHHH
Confidence 999999999999876655444321 13579999999999999999999999999999999998765321 2234443
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcce
Q 041113 235 LRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWI 314 (983)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 314 (983)
++..+....+. .. .....++++.+++++|++.++++++++.|+|+ +..|..+++.. ..|++|+
T Consensus 340 ~~~~~~~~~~~-~~-~~~~~~i~~~~~~~~l~~~l~~~~ii~~d~G~----~~~~~~~~~~~-~~~~~~~---------- 402 (539)
T TIGR02418 340 LKQQREALDRV-PA-TLKQAHLHPLEIIKAMQAIVTDDVTVTVDMGS----HYIWMARYFRS-YRARHLL---------- 402 (539)
T ss_pred HHHHHHHhhhc-cc-cCCCCCcCHHHHHHHHHhhCCCCCEEEECCcH----HHHHHHHhccc-CCCCcee----------
Confidence 33322221110 00 11234699999999999999999999999998 67777666653 4555544
Q ss_pred eEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCC
Q 041113 315 RVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRT 393 (983)
Q Consensus 315 ~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~ 393 (983)
.++++|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+.
T Consensus 403 -~~~~~g~mG~--~lpaaiGa~la~~~~~vv~i~GDGsf~m~~~eL~Ta~~--~~lpi~ivV~NN~~y~~~~~~~~---- 473 (539)
T TIGR02418 403 -ISNGMQTLGV--ALPWAIGAALVRPNTKVVSVSGDGGFLFSSMELETAVR--LKLNIVHIIWNDNGYNMVEFQEE---- 473 (539)
T ss_pred -cCCCcccccc--HHHHHHHHHHhCCCCcEEEEEcchhhhchHHHHHHHHH--hCCCeEEEEEECCcchHHHHHHH----
Confidence 3578899999 999999999999 9999999999999999999999999 99999999999999999865311
Q ss_pred CccccccccccC-CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchH
Q 041113 394 EPRILDQYFYTT-HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANAT 457 (983)
Q Consensus 394 ~~~~~~~~~~~~-~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~ 457 (983)
..+++..++. +++||.++|++||+++.+|++++||+++|+++++.++|+||||.+++++.+.
T Consensus 474 --~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~p~lIev~v~~~~~~~ 536 (539)
T TIGR02418 474 --MKYQRSSGVDFGPIDFVKYAESFGAKGLRVESPDQLEPTLRQAMEVEGPVVVDIPVDYSDNPK 536 (539)
T ss_pred --HhcCCcccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCccccc
Confidence 1122223322 4799999999999999999999999999999999999999999999887654
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-56 Score=540.46 Aligned_cols=405 Identities=17% Similarity=0.208 Sum_probs=311.3
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|++|++.|+++|+|||||+||.|++....... |... .+.... . +...++++.+++++
T Consensus 164 ~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~-----------~~~~-~~~~~~---~---~~~~p~~~~i~~~~ 225 (612)
T PRK07789 164 DIPRVIAEAFHIASTGRPGPVLVDIPKDALQAQTTFS-----------WPPR-MDLPGY---R---PVTKPHGKQIREAA 225 (612)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEccchhhcccccc-----------cCcc-ccccCC---C---CCCCCCHHHHHHHH
Confidence 3688999999999999999999999999643221100 0000 000000 0 11234567899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|.+||||+||+|+|++ .++.+++++|||++|+||++|++ + ||+||++||++ +|.+|..++..++..++
T Consensus 226 ~~L~~AkrPlIl~G~g~~~~~a~~~l~~lae~l~~PV~tt~~-~------kg~~p~~hpl~--~G~~G~~~~~~~~~~l~ 296 (612)
T PRK07789 226 KLIAAARRPVLYVGGGVIRAEASAELRELAELTGIPVVTTLM-A------RGAFPDSHPQH--LGMPGMHGTVAAVAALQ 296 (612)
T ss_pred HHHHhCCCCEEEECCCccccCHHHHHHHHHHHHCCCEEEccc-c------cccCCCCChhh--ccCCcccCcHHHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999996 78888777766777889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-------CChhHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-------RSSKWC 232 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-------~~~~w~ 232 (983)
+|||||++|+++++..+..+....+..++||||.|+..++++++.++.|++|++.+|++|++.+... ....|.
T Consensus 297 ~aDlvL~lG~~l~~~~t~~~~~~~~~~~~i~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~w~ 376 (612)
T PRK07789 297 RSDLLIALGARFDDRVTGKLDSFAPDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAALRAEHAAGGKPDLTAWW 376 (612)
T ss_pred hCCEEEEECCCCCccccCChhhcCCCCcEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhhhcccccccccHHHHH
Confidence 9999999999997655433322223346999999999999999999999999999999999876431 123455
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCc
Q 041113 233 SFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQ 312 (983)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 312 (983)
+.+...+........ ...+.++++..+++.|++.++++++++.|.|+ +..|..+++.+ ..|++|+
T Consensus 377 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~G~----~~~~~~~~~~~-~~p~~~~-------- 441 (612)
T PRK07789 377 AYLDGWRETYPLGYD--EPSDGSLAPQYVIERLGEIAGPDAIYVAGVGQ----HQMWAAQFIDY-EKPRTWL-------- 441 (612)
T ss_pred HHHHHHHHhCccccc--cccCCCcCHHHHHHHHHhhCCCCeEEEECCcH----HHHHHHHhccc-CCCCeEE--------
Confidence 444333221111100 11235699999999999999999999999998 66677776664 5555544
Q ss_pred ceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC
Q 041113 313 WIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD 391 (983)
Q Consensus 313 ~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~ 391 (983)
.++++|+||| |+|+|||+++|+ +++||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+...
T Consensus 442 ---~~~~~G~mG~--glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~--~~lpv~ivV~NN~~~g~i~~~q~~~ 514 (612)
T PRK07789 442 ---NSGGLGTMGY--AVPAAMGAKVGRPDKEVWAIDGDGCFQMTNQELATCAI--EGIPIKVALINNGNLGMVRQWQTLF 514 (612)
T ss_pred ---cCCCcccccc--hhhhHHhhhccCCCCcEEEEEcchhhhccHHHHHHHHH--cCCCeEEEEEECCchHHHHHHHHHh
Confidence 3578899999 999999999999 9999999999999999999999999 9999999999999999987642110
Q ss_pred CCCcccccccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-CCCEEEEEEcCcccc
Q 041113 392 RTEPRILDQYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-GTDRVIEVESCIDAN 455 (983)
Q Consensus 392 ~~~~~~~~~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-~~p~lIeV~~~~~~~ 455 (983)
.. .......+.+ .+.+||.++|++||+++++|++.+||+++|+++++. ++|+||||.++++.+
T Consensus 515 ~~-~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~~p~lIev~i~~~~~ 580 (612)
T PRK07789 515 YE-ERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCEREEDVDAVIEKARAINDRPVVIDFVVGKDAM 580 (612)
T ss_pred hC-CCcceeecCcCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEECCccc
Confidence 00 0000001111 134899999999999999999999999999999984 899999999997553
|
|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-56 Score=533.94 Aligned_cols=403 Identities=15% Similarity=0.107 Sum_probs=315.6
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|++|++.|++++||||||+||.|++..+.... ........ ....++++.+++++
T Consensus 137 ~~~~~i~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~-----------------~~~~~~~~----~~~~~~~~~i~~~~ 195 (552)
T PRK08617 137 NLSEVLANAFRAAESGRPGAAFVSLPQDVVDAPVTSK-----------------AIAPLSKP----KLGPASPEDINYLA 195 (552)
T ss_pred HHHHHHHHHHHHHccCCCCcEEEeChhhhhhcccccc-----------------ccccccCC----CCCCCCHHHHHHHH
Confidence 3678999999999999999999999999654332110 00000000 01123566799999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+|++ .++.+++.+|||++|+||++|++ | ||+||++||+. ++|.+|..+...++..++
T Consensus 196 ~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~-g------kg~~~~~hp~~-~~G~~g~~~~~~~~~~~~ 267 (552)
T PRK08617 196 ELIKNAKLPVLLLGMRASSPEVTAAIRRLLERTNLPVVETFQ-A------AGVISRELEDH-FFGRVGLFRNQPGDELLK 267 (552)
T ss_pred HHHHhCCCCEEEECCCcchhhHHHHHHHHHHHhCCCEEeccc-c------CccCCCCCchh-hccCCcCCCcHHHHHHHH
Confidence 999999999999999986 45678999999999999999997 6 89999999842 378888777666667789
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC----CChhHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH----RSSKWCSFL 235 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~----~~~~w~~~~ 235 (983)
+|||||++|+++.+..+..|.. ....++||||.|+..++++++.++.+.+|++.+|++|++.+... ....|.+.+
T Consensus 268 ~aDlvl~lG~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 346 (552)
T PRK08617 268 KADLVITIGYDPIEYEPRNWNS-EGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKLDGLSLSPQSLEILEEL 346 (552)
T ss_pred hCCEEEEecCcccccccccccc-CCCCcEEEEeCChHHhCCccCCCeEEeCCHHHHHHHHHHhhhcccCccchHHHHHHH
Confidence 9999999999986555433321 12357999999999999999999999999999999998876432 123455555
Q ss_pred HHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCccee
Q 041113 236 RALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIR 315 (983)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 315 (983)
+...+..... .. .....++++..+++.|++.++++.+++.|+|+ +..|..+++.. .+|++|+
T Consensus 347 ~~~~~~~~~~-~~-~~~~~~i~~~~~~~~l~~~l~~~~ii~~d~G~----~~~~~~~~~~~-~~p~~~~----------- 408 (552)
T PRK08617 347 RAQLEELAER-PA-RLEEGAVHPLRIIRALQDIVTDDTTVTVDVGS----HYIWMARYFRS-YEPRHLL----------- 408 (552)
T ss_pred HHHHHHhhhh-hc-ccCCCCcCHHHHHHHHHHhcCCCcEEEeCCcH----HHHHHHHhccc-cCCCeEE-----------
Confidence 4433321111 10 11235699999999999999999999999998 66666665543 4454443
Q ss_pred EeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCC
Q 041113 316 VAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTE 394 (983)
Q Consensus 316 ~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~ 394 (983)
.++++|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|+++ |++|+++||+||++|++++..+.
T Consensus 409 ~~~~~g~mG~--~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~--~~lpv~~vV~NN~~~~~~~~~~~----- 479 (552)
T PRK08617 409 FSNGMQTLGV--ALPWAIAAALVRPGKKVVSVSGDGGFLFSAMELETAVR--LKLNIVHIIWNDGHYNMVEFQEE----- 479 (552)
T ss_pred ecCccccccc--cccHHHhhHhhcCCCcEEEEEechHHhhhHHHHHHHHH--hCCCeEEEEEECCccchHHHHHH-----
Confidence 3567899999 999999999999 9999999999999999999999999 99999999999999999865321
Q ss_pred ccccccccccC-CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHH
Q 041113 395 PRILDQYFYTT-HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSM 461 (983)
Q Consensus 395 ~~~~~~~~~~~-~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~ 461 (983)
..+.+.+++. +++||.++|++||+++++|++++||+++|+++++.++|+||||.+++++.+..++.
T Consensus 480 -~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~liev~~~~~~~~~~~~~ 546 (552)
T PRK08617 480 -MKYGRSSGVDFGPVDFVKYAESFGAKGLRVTSPDELEPVLREALATDGPVVIDIPVDYSDNIKLMEQ 546 (552)
T ss_pred -hhcCCcccCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCcEEEEEEecccccchhhhh
Confidence 1223333333 47999999999999999999999999999999999999999999999887776654
|
|
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-56 Score=532.90 Aligned_cols=416 Identities=13% Similarity=0.132 Sum_probs=318.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+++++++|++.|.++ +|||||+||.|++....... . ..+.... .. +.+.++++.++++++
T Consensus 139 ~~~~l~~A~~~A~~~-~GPV~l~iP~Dv~~~~~~~~-~-------------~~~~~~~---~~--~~~~~~~~~i~~~~~ 198 (576)
T PRK08611 139 LPEIVNQAIRTAYEK-KGVAVLTIPDDLPAQKIKDT-T-------------NKTVDTF---RP--TVPSPKPKDIKKAAK 198 (576)
T ss_pred HHHHHHHHHHHHhhC-CCCEEEEeChhhhhcccccc-c-------------ccccccC---CC--CCCCCCHHHHHHHHH
Confidence 678999999999996 59999999999654332100 0 0000000 00 122456678999999
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQF 161 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~a 161 (983)
+|++||||+||+|+|++ .+.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..+...++..+++|
T Consensus 199 ~L~~AkrPvil~G~g~~-~a~~~l~~lae~~~~PV~tt~~-g------kg~~~~~hp~~--~G~~g~~~~~~a~~~l~~a 268 (576)
T PRK08611 199 LINKAKKPVILAGLGAK-HAKEELLAFAEKAKIPIIHTLP-A------KGIIPDDHPYS--LGNLGKIGTKPAYEAMQEA 268 (576)
T ss_pred HHHcCCCcEEEECcCcc-hHHHHHHHHHHHhCCCEEEccc-c------ccccCCCCccc--cccCCCCCcHHHHHHHHhC
Confidence 99999999999999987 4567999999999999999997 6 89999999996 6888877766676778999
Q ss_pred CEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHHHH
Q 041113 162 DVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMM 241 (983)
Q Consensus 162 Dlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~~~ 241 (983)
|+||+||+++.... |. ....++||||.|+.+++++++.++.|.+|++.+|++|.+.+.......|.+.+......
T Consensus 269 Dlvl~iG~~~~~~~---~~--~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~ 343 (576)
T PRK08611 269 DLLIMVGTNYPYVD---YL--PKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIKHVEDRRFLEACQENMAK 343 (576)
T ss_pred CEEEEeCCCCCccc---cC--CCCCcEEEEeCCHHHcCCccCCCeeEecCHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 99999999974211 21 12357999999999999999999999999999999999877544445677665544433
Q ss_pred HHHHHHhh-hcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecC
Q 041113 242 VASEISFQ-ICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNR 320 (983)
Q Consensus 242 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 320 (983)
+....... ...+.++++..+++.|++.+|++++++.|.|+ +..|..+++.+ ..|++|+ .+.++
T Consensus 344 ~~~~~~~~~~~~~~~i~p~~~~~~l~~~l~~~~ivv~d~G~----~~~~~~~~~~~-~~~~~~~-----------~~~~~ 407 (576)
T PRK08611 344 WWKWMEEDENNASTPIKPERVMAAIQKIADDDAVLSVDVGT----VTVWSARYLNL-GTNQKFI-----------ISSWL 407 (576)
T ss_pred HHHHhhhhccCCCCCcCHHHHHHHHhhhcCCCeEEEEcChH----HHHHHHhcCCc-CCCCeEE-----------eCCCc
Confidence 33222211 12235699999999999999999999999998 66677666664 4444443 35678
Q ss_pred CCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccc
Q 041113 321 GASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILD 399 (983)
Q Consensus 321 G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~ 399 (983)
|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+... ..
T Consensus 408 g~mG~--glpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~r--~~l~~iivV~NN~~~g~i~~~q~~~------~~ 477 (576)
T PRK08611 408 GTMGC--GLPGAIAAKIAFPDRQAIAICGDGGFSMVMQDFVTAVK--YKLPIVVVVLNNQQLAFIKYEQQAA------GE 477 (576)
T ss_pred hhhhh--hHHHHHHHHHhCCCCcEEEEEcccHHhhhHHHHHHHHH--hCCCeEEEEEeCCcchHHHHHHHHh------cC
Confidence 99999 999999999999 9999999999999999999999999 9999999999999999987532111 11
Q ss_pred ccccc-CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHHHHHHHHHHHHHHHhhhh
Q 041113 400 QYFYT-THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNVLS 478 (983)
Q Consensus 400 ~~~~~-~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (983)
..+++ ..++||.++|++||+++.+|++.+||+++|+++++.++|+||||.+++.+.+............+...+++.+.
T Consensus 478 ~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (576)
T PRK08611 478 LEYAIDLSDMDYAKFAEACGGKGYRVEKAEELDPAFEEALAQDKPVIIDVYVDPNAAPLPGKIVNDEALGYSKWAIKSLF 557 (576)
T ss_pred CcccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCcccCCCCcccccchhhhhHHHHHHHH
Confidence 11222 34699999999999999999999999999999999999999999999876442222222333344445555544
|
|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-56 Score=536.03 Aligned_cols=402 Identities=17% Similarity=0.200 Sum_probs=312.6
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.+++|++.|+++++|||||+||.|.+....... . +. ..+... .... ....++++.+++++
T Consensus 138 ~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~-~---------~~--~~~~~~--~~~~--~~~~~~~~~~~~~~ 201 (572)
T PRK06456 138 EIPQWIKNAFYIATTGRPGPVVIDIPRDIFYEKMEEI-K---------WP--EKPLVK--GYRD--FPTRIDRLALKKAA 201 (572)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEecChhHhhcccccc-c---------cc--cccccc--CCCC--CCCCCCHHHHHHHH
Confidence 3678899999999999999999999998532221100 0 00 000000 0000 01234667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+|++ .++.+++++|+|++|+||++|++ | ||+||++||++ +|.+|..++..+...+.
T Consensus 202 ~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~-g------kg~i~~~hp~~--~G~~g~~~~~~~~~~~~ 272 (572)
T PRK06456 202 EILINAERPIILVGTGVVWSNATPEVLELAELLHIPIVSTFP-G------KTAIPHDHPLY--FGPMGYYGRAEASMAAL 272 (572)
T ss_pred HHHHhCCCcEEEECCCCcccchHHHHHHHHHHhCCCEEEcCc-c------CcCCCCCCccc--cccCCCCCCHHHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999995 78888777666667788
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC----CChhHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH----RSSKWCSF 234 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~----~~~~w~~~ 234 (983)
+||+||++|+++++..+..|..... ..++||||+|+..++++++.++.+.+|++.+|++|.+.+... ....|.+.
T Consensus 273 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~ 352 (572)
T PRK06456 273 ESDAMLVVGARFSDRTFTSYDEMVETRKKFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAITELGQKRDRSAWLKR 352 (572)
T ss_pred hCCEEEEECCCCchhhccccccccCCCCeEEEEeCChHHhCCccCCCeEEecCHHHHHHHHHHHhhhcccccccHHHHHH
Confidence 9999999999997766544433222 346999999999999999999999999999999998866431 22457665
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcce
Q 041113 235 LRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWI 314 (983)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 314 (983)
++..++....... ...+.++++..+++.|++.++++++|+.|+|+ +.+|...++.+ .+|++|+
T Consensus 353 ~~~~~~~~~~~~~--~~~~~~i~~~~~~~~l~~~l~~~~ii~~d~g~----~~~~~~~~~~~-~~p~~~~---------- 415 (572)
T PRK06456 353 VKEYKEYYSQFYY--TEENGKLKPWKIMKTIRQALPRDAIVTTGVGQ----HQMWAEVFWEV-LEPRTFL---------- 415 (572)
T ss_pred HHHHHHhchhhcc--cccCCCcCHHHHHHHHHHhCCCCEEEEECCcH----HHHHHHHhcCc-CCCCcEE----------
Confidence 5444332211110 11234699999999999999999999999999 66666655553 4554444
Q ss_pred eEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCC
Q 041113 315 RVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRT 393 (983)
Q Consensus 315 ~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~ 393 (983)
.++++|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+..
T Consensus 416 -~~~~~g~mG~--glpaAiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~--~~l~i~ivV~NN~~yg~i~~~q~~--- 487 (572)
T PRK06456 416 -TSSGMGTMGF--GLPAAMGAKLARPDKVVVDLDGDGSFLMTGTNLATAVD--EHIPVISVIFDNRTLGLVRQVQDL--- 487 (572)
T ss_pred -cCCCcccccc--hhHHHHHHHHhCCCCeEEEEEccchHhcchHHHHHHHH--hCCCeEEEEEECCchHHHHHHHHH---
Confidence 3578899999 999999999999 8999999999999999999999999 999999999999999999764211
Q ss_pred Cccccc-cccccC--CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 394 EPRILD-QYFYTT--HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 394 ~~~~~~-~~~~~~--~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
.+. +...+. +++||+++|++||+++.+|++.+||+++|+++++.++|+||||.+++++.
T Consensus 488 ---~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~v~~~~~ 549 (572)
T PRK06456 488 ---FFGKRIVGVDYGPSPDFVKLAEAFGALGFNVTTYEDIEKSLKSAIKEDIPAVIRVPVDKEEL 549 (572)
T ss_pred ---hhCCCcccccCCCCCCHHHHHHHCCCeeEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 111 111221 35899999999999999999999999999999999999999999997653
|
|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-56 Score=534.45 Aligned_cols=403 Identities=13% Similarity=0.080 Sum_probs=312.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
++++|++|++.|++++ |||||+||.|.+....... .. ............ .+...++++.++++++
T Consensus 139 ~~~~l~~A~~~A~~~~-gPV~i~iP~Dv~~~~~~~~--~~----------~~~~~~~~~~~~--~~~~~~~~~~i~~a~~ 203 (597)
T PRK08273 139 LRHLVDRAVRTALAER-TVTAVILPNDVQELEYEPP--PH----------AHGTVHSGVGYT--RPRVVPYDEDLRRAAE 203 (597)
T ss_pred HHHHHHHHHHHHhhCC-CCEEEEeCcchhhCcccCc--cc----------cccccccccCCC--CCCCCCCHHHHHHHHH
Confidence 6889999999999975 9999999999643221100 00 000000000000 0122356778999999
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQF 161 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~a 161 (983)
+|++||||+|++|+|++ ++.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..++..+++.+++|
T Consensus 204 ~L~~AkrPvi~~G~g~~-~a~~~l~~lae~~~~PV~tt~~-g------kg~~~e~hp~~--~G~~G~~g~~~a~~~~~~a 273 (597)
T PRK08273 204 VLNAGRKVAILVGAGAL-GATDEVIAVAERLGAGVAKALL-G------KAALPDDLPWV--TGSIGLLGTKPSYELMREC 273 (597)
T ss_pred HHhcCCCEEEEECcchH-hHHHHHHHHHHHhCCceeeccc-C------cccCCCCCccc--eecCCCCccHHHHHHHHhC
Confidence 99999999999999986 5678999999999999999997 7 89999999995 7888888877787888999
Q ss_pred CEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHHHH
Q 041113 162 DVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMM 241 (983)
Q Consensus 162 Dlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~~~ 241 (983)
||||+||+++... .+.......++||||+|+..++++++.++.|.+|++.+|++|++.+.......|.+.+...+..
T Consensus 274 Dlvl~lG~~~~~~---~~~~~~~~~~~i~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~ 350 (597)
T PRK08273 274 DTLLMVGSSFPYS---EFLPKEGQARGVQIDIDGRMLGLRYPMEVNLVGDAAETLRALLPLLERKKDRSWRERIEKWVAR 350 (597)
T ss_pred CEEEEeCCCCCHH---hcCCCCCCCeEEEEeCCHHHcCCCCCCCceEecCHHHHHHHHHHhhhccCCHHHHHHHHHHHHH
Confidence 9999999998421 1211122347999999999999999999999999999999999877544445677666555554
Q ss_pred HHHHHHhh-hcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecC
Q 041113 242 VASEISFQ-ICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNR 320 (983)
Q Consensus 242 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 320 (983)
+....... ...+.++++.++++.|++.+|++++++.|+|+ +..|..+++++ +.+++|+ .++++
T Consensus 351 ~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~~~ivv~d~G~----~~~~~~~~~~~-~~~~~~~-----------~s~~~ 414 (597)
T PRK08273 351 WWETLEARAMVPADPVNPQRVFWELSPRLPDNAILTADSGS----CANWYARDLRM-RRGMMAS-----------LSGTL 414 (597)
T ss_pred hHhhhhhhhcCCCCCcCHHHHHHHHHhhCCCCeEEEECCcH----HHHHHHHhCCC-CCCCeEE-----------ecCcc
Confidence 43322211 12245799999999999999999999999998 66677776664 4444433 46889
Q ss_pred CCCCccchHHHHHhhhhcc-CceEEEEEccchhhhc-cchHHHHHhhcc-----CCCEEEEEEeCCCCccccCCCCCCCC
Q 041113 321 GASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHD-TNGLAILKQRMK-----RKPILMLVINNHGGAIFSLLPIADRT 393 (983)
Q Consensus 321 G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~-----~lpv~iiV~NN~g~g~~~~~~~~~~~ 393 (983)
|+||| |+|+||||++|+ +++||+|+|||||+|+ +|||+|++| | ++|+++||+||++|++++..+.....
T Consensus 415 g~mG~--glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~~EL~Ta~r--~~~~~~~lpviivV~NN~~~~~i~~~q~~~~~ 490 (597)
T PRK08273 415 ATMGP--AVPYAIAAKFAHPDRPVIALVGDGAMQMNGMAELITVAK--YWRQWSDPRLIVLVLNNRDLNQVTWEQRVMEG 490 (597)
T ss_pred ccccc--hHHHHHHHHHhCCCCcEEEEEcchhHhccchHHHHHHHH--HhhcccCCCEEEEEEeCCcchHHHHHHHHhcC
Confidence 99999 999999999999 9999999999999999 699999999 8 89999999999999998653210000
Q ss_pred CccccccccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 394 EPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 394 ~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
...+. .....+++||+++|++||+++.+|++.+||+++|+++++.++|+||||.+++++
T Consensus 491 -~~~~~-~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV~~~~~~ 549 (597)
T PRK08273 491 -DPKFE-ASQDLPDVPYARFAELLGLKGIRVDDPEQLGAAWDEALAADRPVVLEVKTDPNV 549 (597)
T ss_pred -CCccc-ccccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEEEeCCCC
Confidence 00010 111225799999999999999999999999999999999999999999999876
|
|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-56 Score=533.17 Aligned_cols=398 Identities=15% Similarity=0.147 Sum_probs=310.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+++++++|++.|+++|+|||||+||.|........ .+...... +...++++.++++++
T Consensus 134 ~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~-----------------~~~~~~~~-----~~~~~~~~~i~~~~~ 191 (547)
T PRK08322 134 IPEVVREAFRLAEEERPGAVHLELPEDIAAEETDG-----------------KPLPRSYS-----RRPYASPKAIERAAE 191 (547)
T ss_pred HHHHHHHHHHHHccCCCCcEEEEcChhhhhCcccc-----------------ccccccCC-----CCCCCCHHHHHHHHH
Confidence 67899999999999999999999999953322100 01010000 112345678999999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
+|.+||||+|++|+|+. .++.+++.+|||++++||++|++ | ||+||++||++ +|.+|..+...++..+++
T Consensus 192 ~l~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~~-g------kg~~~~~hp~~--~G~~G~~~~~~~~~~l~~ 262 (547)
T PRK08322 192 AIQAAKNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQM-G------KGVIPETHPLS--LGTAGLSQGDYVHCAIEH 262 (547)
T ss_pred HHHhCCCcEEEECCCcchhcHHHHHHHHHHHhCCCEEEccc-c------CCcCCCCCchh--ccCCCCCCCHHHHHHHHh
Confidence 99999999999999986 45678999999999999999997 6 89999999996 677876666666778899
Q ss_pred CCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHH-HHHHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCS-FLRALD 239 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~-~~~~~~ 239 (983)
||+||++|+++.+..+..|.. ....++||||.|+..+++++..++.+++|++.++++|.+.+... ..|.. .+...+
T Consensus 263 aDlil~lG~~l~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~--~~~~~~~~~~~~ 339 (547)
T PRK08322 263 ADLIINVGHDVIEKPPFFMNP-NGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERLADQ--PHWDFPRFLKIR 339 (547)
T ss_pred CCEEEEECCCCccccccccCC-CCCCeEEEEeCCHHHcCCCcCCCeEEecCHHHHHHHHHHhcccc--ccccHHHHHHHH
Confidence 999999999998766544431 12346999999999999999999999999999999998876432 12221 122222
Q ss_pred HHHHHHHHhhh-cccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEee
Q 041113 240 MMVASEISFQI-CADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAG 318 (983)
Q Consensus 240 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 318 (983)
+.......... ....++++.++++.|++.++++++++.|+|+ +.+|..++++. .+|++|+ .+.
T Consensus 340 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ii~~d~G~----~~~~~~~~~~~-~~~~~~~-----------~~~ 403 (547)
T PRK08322 340 EAIEAHLEEGADDDRFPMKPQRIVADLRKVMPDDDIVILDNGA----YKIWFARNYRA-YEPNTCL-----------LDN 403 (547)
T ss_pred HHHHHhhhhcccCCCCCcCHHHHHHHHHHHCCCCeEEEECCcH----HHHHHHHhccc-CCCCCEE-----------cCC
Confidence 21111111111 1224689999999999999999999999999 56666665553 4455444 357
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
++|+||| |+|+|||+++|+ +++||+++|||||+|++|||+|+++ |++|+++||+||++|++++..+.. .
T Consensus 404 ~~g~mG~--~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~--~~lpv~iiV~NN~~~g~~~~~~~~------~ 473 (547)
T PRK08322 404 ALATMGA--GLPSAIAAKLVHPDRKVLAVCGDGGFMMNSQELETAVR--LGLPLVVLILNDNAYGMIRWKQEN------M 473 (547)
T ss_pred Ccccccc--hhHHHHHHHHhCCCCcEEEEEcchhHhccHHHHHHHHH--hCCCeEEEEEeCCCcchHHHHHHh------h
Confidence 8899999 999999999999 9999999999999999999999999 999999999999999999753211 1
Q ss_pred cccccc-cCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHH
Q 041113 398 LDQYFY-TTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFH 459 (983)
Q Consensus 398 ~~~~~~-~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~ 459 (983)
+.+.++ +.+++||+++|++||+++.+|++.+||+++|+++++.++|+||||.++++.+.+.+
T Consensus 474 ~~~~~~~~~~~~df~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~v~~~~~~~~~ 536 (547)
T PRK08322 474 GFEDFGLDFGNPDFVKYAESYGAKGYRVESADDLLPTLEEALAQPGVHVIDCPVDYSENDRVL 536 (547)
T ss_pred cCCcccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCccCcchh
Confidence 112222 23579999999999999999999999999999999999999999999987765533
|
|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-56 Score=534.85 Aligned_cols=398 Identities=18% Similarity=0.226 Sum_probs=314.2
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
++++++||++.|+++|||||||+||.|++..+.... +.. ..+... ..+...+++..++++++
T Consensus 149 ~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~-----------~~~-~~~~~~------~~~~~~~~~~~i~~~~~ 210 (571)
T PRK07710 149 LPRIIKEAFHIATTGRPGPVLIDIPKDMVVEEGEFC-----------YDV-QMDLPG------YQPNYEPNLLQIRKLVQ 210 (571)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEcChhHhhcccccc-----------ccc-cccccC------CCCCCCCCHHHHHHHHH
Confidence 678999999999999999999999999653322100 000 000000 00122346677999999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
+|++||||+||+|+|++ .++.+++.+|+|++|+||++|++ | ||+||++||++ +|.+|..+....+..+++
T Consensus 211 ~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~-~------kg~i~~~hpl~--~G~~G~~~~~~~~~~l~~ 281 (571)
T PRK07710 211 AVSVAKKPVILAGAGVLHAKASKELTSYAEQQEIPVVHTLL-G------LGGFPADHPLF--LGMAGMHGTYTANMALYE 281 (571)
T ss_pred HHHhCCCCEEEECCCcCccchHHHHHHHHHHhCCCEEEcCc-c------CccCCCCCccc--cCCCCCCCCHHHHHHHHh
Confidence 99999999999999976 45678999999999999999996 6 89999999996 688887777777778899
Q ss_pred CCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-CChhHHHHHHHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-RSSKWCSFLRALD 239 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-~~~~w~~~~~~~~ 239 (983)
||+||++|+++.+..+..+....+..++||||.|+..++++++.++.+.+|++.+|++|++.+... ....|.+.++..+
T Consensus 282 aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ 361 (571)
T PRK07710 282 CDLLINIGARFDDRVTGNLAYFAKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQEGKKENHHEWLSLLKNWK 361 (571)
T ss_pred CCEEEEeCCCCCccccCchhhcCCCCeEEEEECCHHHhcCcCCCCeEEecCHHHHHHHHHHhhhccCCcHHHHHHHHHHH
Confidence 999999999997655433322233346899999999999999999999999999999998865432 2356766555443
Q ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
.+..... .....++++..+++.|++.+|++++++.|.|+ +..|..+++.+ ++|++|+ .+++
T Consensus 362 ~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~----~~~~~~~~~~~-~~~~~~~-----------~~~~ 422 (571)
T PRK07710 362 EKYPLSY---KRNSESIKPQKAIEMLYEITKGEAIVTTDVGQ----HQMWAAQYYPF-KTPDKWV-----------TSGG 422 (571)
T ss_pred HhChhhh---cCCCCCcCHHHHHHHHHhhCCCCeEEEECCcH----HHHHHHHhccc-CCCCeEE-----------cCCC
Confidence 3221111 11134699999999999999999999999998 66777766664 5555554 3578
Q ss_pred CCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 320 RGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
+|+||| |+|+|||+++|. +++||+++|||||+|++|||+|++| |++|+++||+||++|++++..+. ..+
T Consensus 423 ~g~mG~--glpaAiGaala~p~~~vv~i~GDGsf~m~~~eL~ta~r--~~lpi~ivV~NN~~~~~i~~~~~------~~~ 492 (571)
T PRK07710 423 LGTMGF--GLPAAIGAQLAKPDETVVAIVGDGGFQMTLQELSVIKE--LSLPVKVVILNNEALGMVRQWQE------EFY 492 (571)
T ss_pred cccccc--hHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHH--hCCCeEEEEEECchHHHHHHHHH------HHh
Confidence 899999 999999999999 8999999999999999999999999 99999999999999999975421 111
Q ss_pred cc-cccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 399 DQ-YFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 399 ~~-~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
.. +... ..++||+++|++||+++++|++.+||+++|+++++.++|+||||.++++++
T Consensus 493 ~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~~p~lieV~vd~~~~ 552 (571)
T PRK07710 493 NQRYSHSLLSCQPDFVKLAEAYGIKGVRIDDELEAKEQLQHAIELQEPVVIDCRVLQSEK 552 (571)
T ss_pred CCcceeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCccc
Confidence 11 1111 246999999999999999999999999999999999999999999997664
|
|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-56 Score=534.11 Aligned_cols=402 Identities=20% Similarity=0.233 Sum_probs=309.7
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.++|||+.|+++|||||||+||.|.+..+.... . ..+...........+...++++.+++++
T Consensus 146 ~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~v~~a~ 211 (585)
T CHL00099 146 DISRIVAEAFYIAKHGRPGPVLIDIPKDVGLEKFDYY-P-------------PEPGNTIIKILGCRPIYKPTIKRIEQAA 211 (585)
T ss_pred HHHHHHHHHHHHHccCCCCeEEEecChhhhhhhcccc-c-------------ccccccccccccCCCCCCCCHHHHHHHH
Confidence 3688999999999999999999999999643221100 0 0000000000000012235677899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+||+|+|++ .++.+++++|||++|+||++|++ | ||+||++||++ +|.+|..+...++..+.
T Consensus 212 ~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~PV~tt~~-~------kg~~~~~hpl~--~G~~G~~~~~~~~~~l~ 282 (585)
T CHL00099 212 KLILQSSQPLLYVGGGAIISDAHQEITELAELYKIPVTTTLM-G------KGIFDEDHPLC--LGMLGMHGTAYANFAVS 282 (585)
T ss_pred HHHHcCCCcEEEECCCCchhchHHHHHHHHHHHCCCEEEccc-c------CcCCCCCCCcc--cCCCCCCCCHHHHHHHH
Confidence 999999999999999987 56778999999999999999997 6 89999999996 68887666666667789
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCC-------ChhHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHR-------SSKWC 232 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~-------~~~w~ 232 (983)
+|||||++|+++++..+..+....+..++||||.|+..++++++.++.+.+|++.+|++|.+.+.... ...|.
T Consensus 283 ~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~ 362 (585)
T CHL00099 283 ECDLLIALGARFDDRVTGKLDEFACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLKNSPNLLESEQTQAWR 362 (585)
T ss_pred hCCEEEEECCCCcccccCCHhHcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHHhhhcccccccchHHHHH
Confidence 99999999999977655433322233479999999999999999999999999999999988764321 13455
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCc
Q 041113 233 SFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQ 312 (983)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 312 (983)
+.+...++...... ...+.++++.++++.|++.+| +++++.|.|+ +..|..+++.. .|++|+
T Consensus 363 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~l~~~~~-d~iv~~d~G~----~~~~~~~~~~~--~~~~~~-------- 424 (585)
T CHL00099 363 ERINRWRKEYPLLI---PKPSTSLSPQEVINEISQLAP-DAYFTTDVGQ----HQMWAAQFLKC--KPRKWL-------- 424 (585)
T ss_pred HHHHHHHHhChhhc---cccCCCcCHHHHHHHHHhhCC-CeEEEECCcH----HHHHHHHhccC--CCCcEE--------
Confidence 44433222111100 112457999999999999999 8999999998 66777666552 344443
Q ss_pred ceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC
Q 041113 313 WIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD 391 (983)
Q Consensus 313 ~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~ 391 (983)
.++++|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|+++ |++|+++||+||++|++++..+...
T Consensus 425 ---~~~~~g~mG~--glpaaiGaala~p~~~vv~i~GDG~f~m~~~eL~Ta~~--~~l~~~~vV~NN~~y~~i~~~q~~~ 497 (585)
T CHL00099 425 ---SSAGLGTMGY--GLPAAIGAQIAHPNELVICISGDASFQMNLQELGTIAQ--YNLPIKIIIINNKWQGMVRQWQQAF 497 (585)
T ss_pred ---cCccccchhh--hHHHHHHHHHhCCCCeEEEEEcchhhhhhHHHHHHHHH--hCCCeEEEEEECCcchHHHHHHHHh
Confidence 3588999999 999999999999 9999999999999999999999999 9999999999999999987642110
Q ss_pred CCCccccccccc---cCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 392 RTEPRILDQYFY---TTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 392 ~~~~~~~~~~~~---~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
...++.. ..+++||.++|++||+++++|++.+||+++|+++++.++|+||||.+++++.
T Consensus 498 -----~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~v~~~~~ 559 (585)
T CHL00099 498 -----YGERYSHSNMEEGAPDFVKLAEAYGIKGLRIKSRKDLKSSLKEALDYDGPVLIDCQVIEDEN 559 (585)
T ss_pred -----cCCCcccccCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEECCCcc
Confidence 0111111 1236899999999999999999999999999999999999999999997664
|
|
| >cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-55 Score=494.98 Aligned_cols=356 Identities=17% Similarity=0.198 Sum_probs=284.5
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCcc
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKI 573 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~~ 573 (983)
||++|+++.+.+|++.|+.++.+.. ..++.++|||+||+|++||||+... .++.. .+..+++.++|+++
T Consensus 1 ~I~~i~~~~~~~p~~~p~~~~~~~~----~~~~~~~Vrv~td~G~~G~Ge~~~~---~~~~~----~~~~~~~~llg~~~ 69 (395)
T cd03323 1 KITEMRVTPVAGHDSPLLNLSGAHE----PFFTRNIVELTDDNGNTGVGESPGG---AEALE----ALLEAARSLVGGDV 69 (395)
T ss_pred CeEEEEEEEEeccCCccccccccCC----CcceEEEEEEEECCCCeeccccCCC---HHHHH----HHHHHhHHHhCCCc
Confidence 6999999999999999999866542 2379999999999999999997542 12222 23467888888876
Q ss_pred c-ccccccccCchhhhhhhcCCC-----CCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEE
Q 041113 574 S-YFLPLLKGSFSSWIWSTLGIP-----ACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKIC 647 (983)
Q Consensus 574 ~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~ 647 (983)
. ....++..+.........+.. ......+|++|||||||||+||.+|+|||+||||.. +++|++|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGG~~---------r~~v~~y 140 (395)
T cd03323 70 FGAYLAVLESVRVAFADRDAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLGGGQ---------RDSVPFL 140 (395)
T ss_pred chhhHHHHHHHHHHHhcccccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhCCCc---------cCeEEEE
Confidence 3 333333322111000000000 002357899999999999999999999999999975 4789999
Q ss_pred Eeec--------------------CCCCHHHHHHHHHHhhh-cCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEE
Q 041113 648 ALID--------------------SNKSPVEVASIATTLVE-EGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRV 706 (983)
Q Consensus 648 ~~~~--------------------~~~~~~~~~~~~~~~~~-~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~v 706 (983)
+++. ...+++++.++++++++ +||++||+|+|. .++++|+++|+++|+++ +++.||+
T Consensus 141 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KiKvG~-~~~~~di~~v~avRea~-~~~~l~v 218 (395)
T cd03323 141 AYLFYKGDRHKTDLPYPWFRDRWGEALTPEGVVRLARAAIDRYGFKSFKLKGGV-LPGEEEIEAVKALAEAF-PGARLRL 218 (395)
T ss_pred EEeeeccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCcEEEEecCC-CCHHHHHHHHHHHHHhC-CCCcEEE
Confidence 8742 13478999999999986 699999999987 47899999999999999 5899999
Q ss_pred EcCCCCCHHHHHHHHhhcccCCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcC
Q 041113 707 DANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKP 785 (983)
Q Consensus 707 DaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~ 785 (983)
|||++|++++|+++++.|++ ++.|||||+++++++++|++++++||++||++++..+ +..+++.+ +|++|+|+
T Consensus 219 DaN~~w~~~~A~~~~~~l~~-~l~~iEeP~~d~~~~~~L~~~~~~PIa~dEs~~~~~~-----~~~~i~~~avdil~~d~ 292 (395)
T cd03323 219 DPNGAWSLETAIRLAKELEG-VLAYLEDPCGGREGMAEFRRATGLPLATNMIVTDFRQ-----LGHAIQLNAVDIPLADH 292 (395)
T ss_pred eCCCCcCHHHHHHHHHhcCc-CCCEEECCCCCHHHHHHHHHhcCCCEEcCCcccCHHH-----HHHHHHcCCCcEEeecc
Confidence 99999999999999999999 9999999999999999999999999999999998653 66666554 79999999
Q ss_pred CCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccc-hh-cccccC
Q 041113 786 SVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGT-YQ-WLKEDV 863 (983)
Q Consensus 786 ~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~-~~~~d~ 863 (983)
+++||+|+++|++++|+++|++++.|++.+++|+.++++|++++++|+.. ++++ .. +..+++
T Consensus 293 ~~~GGit~~~kia~~A~~~gi~~~~h~~~e~~i~~aa~~hlaaa~~~~~~----------------~~d~~~~~~~~~~~ 356 (395)
T cd03323 293 HFWGGMRGSVRVAQVCETWGLGWGMHSNNHLGISLAMMTHVAAAAPGLIT----------------ACDTHWIWQDGQVI 356 (395)
T ss_pred ccccCHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHhCCCccc----------------ccccchhhhccccc
Confidence 99999999999999999999999999888999999999999999886411 1111 11 223345
Q ss_pred CCCCceeec----cCCCCeeeEEecchhhhhhhccc
Q 041113 864 TTDPISICH----NSCRGFVEASVAKATHILQNLQI 895 (983)
Q Consensus 864 ~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~ 895 (983)
..+|+.+++ +|++||||+++| ++.+++++.
T Consensus 357 ~~~~~~~~~G~~~vp~~PGLGv~~d--~~~l~~~~~ 390 (395)
T cd03323 357 TGEPLRIKDGKVAVPDKPGLGVELD--RDKLAKAHE 390 (395)
T ss_pred cCCCceeeCCEEECCCCCcCCccCC--HHHHHHHHH
Confidence 556887773 999999999999 888888764
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-56 Score=528.86 Aligned_cols=401 Identities=11% Similarity=0.105 Sum_probs=311.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+++.+++|++.|++ ++|||||+||.|.+....... ..+......... ....++++.++++++
T Consensus 134 ~~~~i~~A~~~A~~-~~GPV~l~iP~Dv~~~~~~~~---------------~~~~~~~~~~~~--~~~~~~~~~v~~~~~ 195 (575)
T TIGR02720 134 LPHVIDEAIRRAYA-HNGVAVVTIPVDFGWQEIPDN---------------DYYASSVSYQTP--LLPAPDVEAVTRAVQ 195 (575)
T ss_pred HHHHHHHHHHHHhh-CCCCEEEEECcchhhcccccc---------------ccccccccccCC--CCCCCCHHHHHHHHH
Confidence 67889999999999 679999999999643222100 000000000000 123456778999999
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQF 161 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~a 161 (983)
+|++||||+|++|+|++ ++.+++.+|||++++||++|++ | ||+||++||++ +|.+|..++..+...+++|
T Consensus 196 ~L~~AkrPvil~G~g~~-~a~~~l~~lae~l~~PV~tt~~-g------kg~~~~~hpl~--~G~~g~~~~~~~~~~l~~a 265 (575)
T TIGR02720 196 TLKAAERPVIYYGIGAR-KAGEELEALSEKLKIPLISTGL-A------KGIIEDRYPAY--LGSAYRVAQKPANEALFQA 265 (575)
T ss_pred HHHcCCCcEEEECcchh-hHHHHHHHHHHHhCCCEEEccc-c------cccCCCCCccc--ccCCcCCCcHHHHHHHHhC
Confidence 99999999999999987 4568999999999999999997 6 89999999996 7888877777777788999
Q ss_pred CEEEEeCCccccHHHHHHHHhcCCce-EEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHHH
Q 041113 162 DVIIQIGSRITSKRISQMIEECFPCT-YILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240 (983)
Q Consensus 162 Dlvl~iG~~~~~~~~~~~~~~~~~~~-~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~~ 240 (983)
|+||++|+++....+ ...+...+ +||||.|+..++++++.++.|.+|++.+|++|++.+.......|...+.....
T Consensus 266 Dlvl~vG~~~~~~~~---~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~ 342 (575)
T TIGR02720 266 DLVLFVGNNYPFAEV---SKAFKNTKYFIQIDIDPAKLGKRHHTDIAVLADAKKALAAILAQVEPRESTPWWQANVANVK 342 (575)
T ss_pred CEEEEeCCCCCcccc---ccccCCCceEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhccccCChHHHHHHHHHHH
Confidence 999999999853322 11233334 59999999999999999999999999999999988755444456544433222
Q ss_pred HHHHHHHhh-hcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 241 MVASEISFQ-ICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 241 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
.+....... ...+.++++..+++.|++.+|++++++.|+|+ +..|..+++++ ..|++|+ .+++
T Consensus 343 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~ii~~D~g~----~~~~~~~~~~~-~~~~~~~-----------~~~~ 406 (575)
T TIGR02720 343 NWRAYLASLEDKTEGPLQAYQVYRAINKIAEDDAIYSIDVGD----ININSNRHLKM-TPKNKWI-----------TSNL 406 (575)
T ss_pred HHHHHhhhhhccCCCCcCHHHHHHHHHHhCCCCcEEEeCCcH----HHHHHHHhCCc-CCCCeEE-----------cCCC
Confidence 222222111 11245799999999999999999999999998 66777666664 5555554 2467
Q ss_pred CCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 320 RGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
+|+||| |+|+|||+++|+ +++||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+.. ..
T Consensus 407 ~gsmG~--glpaAiGa~la~p~r~Vv~i~GDGsf~m~~~eL~Tavr--~~lpi~~VV~NN~~yg~i~~~~~~------~~ 476 (575)
T TIGR02720 407 FATMGV--GVPGAIAAKLNYPDRQVFNLAGDGAFSMTMQDLLTQVQ--YHLPVINIVFSNCTYGFIKDEQED------TN 476 (575)
T ss_pred cchhhc--hHHHHHHHHHhCCCCcEEEEEcccHHHhhHHHHHHHHH--hCCCeEEEEEeCCccHHHHHHHHH------hC
Confidence 899999 999999999999 9999999999999999999999999 999999999999999998653110 01
Q ss_pred cccccc-CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh--ccCCCEEEEEEcCcccchHHH
Q 041113 399 DQYFYT-THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQ--HLGTDRVIEVESCIDANATFH 459 (983)
Q Consensus 399 ~~~~~~-~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~--~~~~p~lIeV~~~~~~~~~~~ 459 (983)
.++..+ ..++||+++|++||+++++|++.+||+++|++++ +.++|+||||.+++++..+..
T Consensus 477 ~~~~~~~~~~~df~~iA~a~G~~~~~v~~~~el~~al~~a~~~~~~~p~liev~i~~~~~~~~~ 540 (575)
T TIGR02720 477 QPLIGVDFNDADFAKIAEGVGAVGFRVNKIEQLPAVFEQAKAIKQGKPVLIDAKITGDRPLPVE 540 (575)
T ss_pred CCcccccCCCCCHHHHHHHCCCEEEEeCCHHHHHHHHHHHHhhCCCCcEEEEEEeCCCCCCCCc
Confidence 112222 2469999999999999999999999999999999 789999999999998755433
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-56 Score=530.46 Aligned_cols=399 Identities=16% Similarity=0.139 Sum_probs=307.3
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.|++|++.|.+++ |||||+||.|.+..+.... .+... .. ....++++.+++++
T Consensus 134 ~~~~~i~~A~~~A~~~~-GPV~l~iP~Dv~~~~~~~~----------------~~~~~--~~----~~~~~~~~~i~~~~ 190 (579)
T TIGR03457 134 RMAEVLNRCFERAWREM-GPAQLNIPRDYFYGEIDVE----------------IPRPV--RL----DRGAGGATSLAQAA 190 (579)
T ss_pred HHHHHHHHHHHHHhcCC-CCEEEEeCcchhhhhcccc----------------cCccc--cc----CCCCCCHHHHHHHH
Confidence 36889999999999985 9999999999643322100 00000 00 01234667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+|++ .++.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..++...+..++
T Consensus 191 ~~L~~A~rP~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt~~-g------kg~~p~~hp~~--~G~~g~~g~~~~~~~l~ 261 (579)
T TIGR03457 191 RLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNSYL-H------NDSFPASHPLW--VGPLGYQGSKAAMKLIS 261 (579)
T ss_pred HHHHhCCCCEEEECcCccccChHHHHHHHHHHhCCCEEEccc-c------cccCCCCCchh--ccCCcCcchHHHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999996 78888777777777889
Q ss_pred CCCEEEEeCCccccHHHHH-HH-HhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC----CChhHH
Q 041113 160 QFDVIIQIGSRITSKRISQ-MI-EECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH----RSSKWC 232 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~-~~-~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~----~~~~w~ 232 (983)
+|||||++|+++++..+.. |. ..+. ..++||||.|+..+++++..++.|.+|++.+|++|.+.+... ....|.
T Consensus 262 ~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~ 341 (579)
T TIGR03457 262 DADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRLAGKAGDANRAERK 341 (579)
T ss_pred hCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHhCCCCCCCeeEecCHHHHHHHHHHhhhhcccccchhhhh
Confidence 9999999999997544321 11 1222 357999999999999999999999999999999999877431 111222
Q ss_pred HHHHHHHHHHHHHHHh----------------hhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCccc
Q 041113 233 SFLRALDMMVASEISF----------------QICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTC 296 (983)
Q Consensus 233 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~ 296 (983)
+.+...+..+.....+ ....+.++++.+++++|++.++++++++.|+|+ +..|..+++++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~iv~~d~G~----~~~~~~~~~~~ 417 (579)
T TIGR03457 342 AKIQAERSAWEQELSEMTHERDPFSLDMIVEQRQEEGNWLHPRQVLRELEKAMPEDAIVSTDIGN----INSVANSYLRF 417 (579)
T ss_pred hhhhhhHHHHHHHHHHHHhhccccccccccccccCCCCCcCHHHHHHHHHHhCCCCeEEEECCch----hHHHHHHhcCc
Confidence 1111111111111100 011234699999999999999999999999998 66677666664
Q ss_pred ccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEE
Q 041113 297 THTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLV 375 (983)
Q Consensus 297 ~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV 375 (983)
+.|++|+ .++++|+||| |+|+|||+++|+ +++||+|+|||||+|++|||+|++| |++|+++||
T Consensus 418 -~~p~~~~-----------~~~~~g~mG~--~lpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Tavr--~~lpvi~vV 481 (579)
T TIGR03457 418 -EKPRKFL-----------APMSFGNCGY--AFPTIIGAKIAAPDRPVVAYAGDGAWGMSMNEIMTAVR--HDIPVTAVV 481 (579)
T ss_pred -CCCCeEE-----------cCCccccccc--hHHHHHhhhhhCCCCcEEEEEcchHHhccHHHHHHHHH--hCCCeEEEE
Confidence 5665554 3578899999 999999999999 9999999999999999999999999 999999999
Q ss_pred EeCCCCccccCCCCCCCCCccccc-ccccc-C-CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc---cCCCEEEEEE
Q 041113 376 INNHGGAIFSLLPIADRTEPRILD-QYFYT-T-HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH---LGTDRVIEVE 449 (983)
Q Consensus 376 ~NN~g~g~~~~~~~~~~~~~~~~~-~~~~~-~-~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~---~~~p~lIeV~ 449 (983)
+||++|++++..+. ..++ ++.++ . ..+||.++|++||+++.+|++++||.++|+++++ .++|+||||.
T Consensus 482 ~NN~~yg~i~~~~~------~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~~~~el~~al~~a~~~~~~~~p~lieV~ 555 (579)
T TIGR03457 482 FRNRQWGAEKKNQV------DFYNNRFVGTELESELSFAGIADAMGAKGVVVDKPEDVGPALKKAIAAQAEGKTTVIEIV 555 (579)
T ss_pred EECcchHHHHHHHH------HhhCCcceeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhCCCCCcEEEEEE
Confidence 99999999875321 1121 12222 1 2379999999999999999999999999999986 5899999999
Q ss_pred cCcccchH
Q 041113 450 SCIDANAT 457 (983)
Q Consensus 450 ~~~~~~~~ 457 (983)
+++++.++
T Consensus 556 v~~~~~~~ 563 (579)
T TIGR03457 556 CTRELGDP 563 (579)
T ss_pred eCCCcCCc
Confidence 99877433
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=524.73 Aligned_cols=391 Identities=15% Similarity=0.127 Sum_probs=305.7
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++++||++.|+++|+|||||+||.|++..+.... . .+.... ... ....++++.+++++
T Consensus 137 ~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~~----------~-----~~~~~~-~~~---~~~~~~~~~i~~~~ 197 (542)
T PRK05858 137 NAGRLVDQALQAAVTPHRGPVFVDFPMDHAFSMADDD----------G-----RPGALT-ELP---AGPTPDPDALARAA 197 (542)
T ss_pred HHHHHHHHHHHHHcCCCCCeEEEEcChhhhhcccccc----------c-----cccccc-cCC---CCCCCCHHHHHHHH
Confidence 3678999999999999999999999999654332110 0 000000 000 11235667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|.+||||+|++|+|++ .++.+++++|||++|+||++|++ | ||+||++||++ +|. .....++
T Consensus 198 ~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~-~------kg~~~~~hpl~--~~~-------~~~~~l~ 261 (542)
T PRK05858 198 GLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGM-G------RGVVPADHPLA--FSR-------ARGKALG 261 (542)
T ss_pred HHHHhCCCcEEEECCCccccChHHHHHHHHHHhCCCEEEcCC-c------CCCCCCCCchh--hhH-------HHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999996 332 2345678
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-CChhHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-RSSKWCSFLRA 237 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-~~~~w~~~~~~ 237 (983)
+||+||+||+++.+..+.++ +. ..++||||.|+..++++++.++.+.+|+++++++|.+.+... ....|.+.++.
T Consensus 262 ~aD~vl~vG~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~ 338 (542)
T PRK05858 262 EADVVLVVGVPMDFRLGFGV---FGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSALAGAGGDRTDHQGWIEELRT 338 (542)
T ss_pred hCCEEEEECCCCcccccccc---cCCCCEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 99999999999865433222 22 357999999999999999999999999999999999877542 33457766655
Q ss_pred HHHHHHHHHHhhh-cccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeE
Q 041113 238 LDMMVASEISFQI-CADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRV 316 (983)
Q Consensus 238 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 316 (983)
.+..+........ ....++++.++++.|++.+|++.+++.|.|+ +..|..+++.+ ..|++|+ .
T Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~g~----~~~~~~~~~~~-~~p~~~~-----------~ 402 (542)
T PRK05858 339 AETAARARDAAELADDRDPIHPMRVYGELAPLLDRDAIVIGDGGD----FVSYAGRYIDP-YRPGCWL-----------D 402 (542)
T ss_pred HHHhhhhhhhhhccCCCCCcCHHHHHHHHHHhcCCCeEEEECCcH----HHHHHHHHccc-cCCCCEE-----------e
Confidence 4433322211111 2345799999999999999999999999998 66666666654 5555544 3
Q ss_pred eecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCc
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEP 395 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~ 395 (983)
++++|+||| |+|+|||+++|. +|+||+++|||||+|++|||+|++| |++|+++||+||++|++++.....
T Consensus 403 ~~~~gsmG~--~lp~aiGa~la~p~r~vv~i~GDG~f~~~~~eL~Ta~~--~~lpi~ivV~NN~~y~~~~~~~~~----- 473 (542)
T PRK05858 403 PGPFGCLGT--GPGYALAARLARPSRQVVLLQGDGAFGFSLMDVDTLVR--HNLPVVSVIGNNGIWGLEKHPMEA----- 473 (542)
T ss_pred CCCcccccc--chhHHHHHHHhCCCCcEEEEEcCchhcCcHHHHHHHHH--cCCCEEEEEEeCCchhhHHHHHHH-----
Confidence 467899999 999999999999 9999999999999999999999999 999999999999999998642111
Q ss_pred cccc-cccc-cCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 396 RILD-QYFY-TTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 396 ~~~~-~~~~-~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
.+. +... ..+++||.++|++||+++.+|++++||+++|+++++.++|+||||.+++++.
T Consensus 474 -~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~~~~~~~ 534 (542)
T PRK05858 474 -LYGYDVAADLRPGTRYDEVVRALGGHGELVTVPAELGPALERAFASGVPYLVNVLTDPSVA 534 (542)
T ss_pred -hcCCccccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCcEEEEEEECCCcC
Confidence 111 1111 2257999999999999999999999999999999999999999999998753
|
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-55 Score=526.34 Aligned_cols=393 Identities=15% Similarity=0.134 Sum_probs=306.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+++.++||++.|.+ ++|||||+||.|......... + ....... . . +...++++.++++++
T Consensus 137 ~~~~i~~A~~~A~~-~~gPV~l~iP~Dv~~~~~~~~-~-------------~~~~~~~-~-~---~~~~~~~~~i~~~~~ 196 (574)
T PRK09124 137 LPRVLAIAMRKAIL-NRGVAVVVLPGDVALKPAPER-A-------------TPHWYHA-P-Q---PVVTPAEEELRKLAA 196 (574)
T ss_pred HHHHHHHHHHHHhc-CCCCEEEEeChhhhhCccccc-c-------------ccccccC-C-C---CCCCCCHHHHHHHHH
Confidence 67889999999998 559999999999643332110 0 0000000 0 0 112245678999999
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQF 161 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~a 161 (983)
+|++||||+||+|+|+. ++.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..+....+..+++|
T Consensus 197 ~L~~AkrPvii~G~g~~-~a~~~l~~lae~l~~PV~tt~~-g------kg~~~~~hp~~--~G~~G~~~~~~~~~~~~~a 266 (574)
T PRK09124 197 LLNGSSNITLLCGSGCA-GAHDELVALAETLKAPIVHALR-G------KEHVEYDNPYD--VGMTGLIGFSSGYHAMMNC 266 (574)
T ss_pred HHHcCCCCEEEECcChH-hHHHHHHHHHHHhCCceEEccc-c------cccCCCCCccc--ccCCccCCCHHHHHHHHhC
Confidence 99999999999999884 4568999999999999999997 6 89999999996 6788877766666778999
Q ss_pred CEEEEeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHHH
Q 041113 162 DVIIQIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240 (983)
Q Consensus 162 Dlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~~ 240 (983)
|+||+||+++... .| +. ..++||||.|+.+++++++.++.|.+|++.++++|.+.+.......|.+.+.....
T Consensus 267 Dlvl~lG~~~~~~---~~---~~~~~~ii~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~ 340 (574)
T PRK09124 267 DTLLMLGTDFPYR---QF---YPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLLEEKTDRKFLDKALEHYR 340 (574)
T ss_pred CEEEEECCCCCcc---cc---cCCCCcEEEeeCCHHHhCCCCCCCeEEEccHHHHHHHHHHhhhccCChHHHHHHHHHHH
Confidence 9999999998521 12 22 34799999999999999999999999999999999887644333457665543333
Q ss_pred HHHHHHHh---hhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEe
Q 041113 241 MVASEISF---QICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVA 317 (983)
Q Consensus 241 ~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 317 (983)
.+...... ......++++..+++.|++.++++++++.|+|+ +..|..+++.. ..|++|+ .+
T Consensus 341 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ivv~d~g~----~~~~~~~~~~~-~~~~~~~-----------~~ 404 (574)
T PRK09124 341 KARKGLDDLAVPSDGGKPIHPQYLARQISEFAADDAIFTCDVGT----PTVWAARYLKM-NGKRRLL-----------GS 404 (574)
T ss_pred HHHHhhhhhhcccCCCCcCCHHHHHHHHHhhcCCCcEEEEcCCH----HHHHHHHhccc-CCCCeEE-----------ec
Confidence 22221111 111235699999999999999999999999999 55566555553 4554444 35
Q ss_pred ecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcc
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPR 396 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~ 396 (983)
+++|+||| |+|+|||+++|+ +++||+|+|||||+|++|||+|++| |++|+++||+||++||+++..... .
T Consensus 405 ~~~G~mG~--~lpaAiGa~la~p~r~vv~i~GDGsf~m~~~eL~Ta~~--~~lpv~ivV~NN~~~g~i~~~~~~-----~ 475 (574)
T PRK09124 405 FNHGSMAN--AMPQALGAQAAHPGRQVVALSGDGGFSMLMGDFLSLVQ--LKLPVKIVVFNNSVLGFVAMEMKA-----G 475 (574)
T ss_pred CCcccccc--hHHHHHHHHHhCCCCeEEEEecCcHHhccHHHHHHHHH--hCCCeEEEEEeCCccccHHHHHHh-----c
Confidence 78999999 999999999999 9999999999999999999999999 999999999999999999643211 0
Q ss_pred cccccccc-CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccch
Q 041113 397 ILDQYFYT-THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANA 456 (983)
Q Consensus 397 ~~~~~~~~-~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~ 456 (983)
.+. .+++ .+++||.++|++||+++++|++.+||+++|+++++.++|+||||.+++++.+
T Consensus 476 ~~~-~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~i~~~~~~ 535 (574)
T PRK09124 476 GYL-TDGTDLHNPDFAAIAEACGITGIRVEKASELDGALQRAFAHDGPALVDVVTAKQELA 535 (574)
T ss_pred CCc-cccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCcccC
Confidence 111 1222 3578999999999999999999999999999999999999999999987643
|
|
| >cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-55 Score=487.76 Aligned_cols=339 Identities=15% Similarity=0.148 Sum_probs=271.1
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHH-HHHHhHhccCc
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQL-RFLLHFMTGAK 572 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l-~~~~~~l~g~~ 572 (983)
||++|+++.+++|++.|+..+...+ ..++.++|||+| +|++||||+.. .++. ...+ +.+.|.|+|++
T Consensus 1 ~I~~i~~~~~~~pl~~p~~~~~~~~----~~~~~v~V~v~~-~G~~G~Ge~~~----~~~~---~~~i~~~~~p~liG~d 68 (352)
T cd03328 1 AVERVEARAYTVPTDAPEADGTLAW----DATTLVLVEVRA-GGRTGLGYTYA----DAAA---AALVDGLLAPVVEGRD 68 (352)
T ss_pred CeeEEEEEEEEccCCCcccCCccce----eeeeEEEEEEEc-CCcEEEeCCCC----hHHH---HHHHHHHHHHHhcCCC
Confidence 7999999999999999985544321 247789999997 79999998642 2222 1222 45889999999
Q ss_pred ccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecC
Q 041113 573 ISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDS 652 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~ 652 (983)
+.+++.++..+... .......+...+|++|||+|||||+||.+|+|||+||||.+ ++|++|++...
T Consensus 69 ~~~~~~l~~~~~~~----~~~~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLGg~~----------~~v~~y~s~~~ 134 (352)
T cd03328 69 ALDPPAAWEAMQRA----VRNAGRPGVAAMAISAVDIALWDLKARLLGLPLARLLGRAH----------DSVPVYGSGGF 134 (352)
T ss_pred cccHHHHHHHHHHH----HHhcCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCC----------CCeEEEEecCC
Confidence 98877665433211 11111223445799999999999999999999999999953 68999987532
Q ss_pred -CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCce
Q 041113 653 -NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQY 731 (983)
Q Consensus 653 -~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~ 731 (983)
..+++++.+++++++++||++||+|+|. ++++|+++|+++|+++|+++.||+|+|++||+++|+++++.|+++++.|
T Consensus 135 ~~~~~e~~~~~a~~~~~~Gf~~~Kikvg~--~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~ 212 (352)
T cd03328 135 TSYDDDRLREQLSGWVAQGIPRVKMKIGR--DPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGVTW 212 (352)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEeecCC--CHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHhCcch
Confidence 3478899999999999999999999985 6899999999999999999999999999999999999999999999999
Q ss_pred eecCCC--ChHHHHHHHhh--cCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCC
Q 041113 732 IEEPVQ--NEEDIIKYCEE--SGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGK 806 (983)
Q Consensus 732 iEeP~~--~~~~~~~l~~~--~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi 806 (983)
||||++ |++++++|+++ +++||++||++++..+ +..+++.+ +|++|+|++++|||+++++++++|+++|+
T Consensus 213 ~EeP~~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~-----~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi 287 (352)
T cd03328 213 FEEPVSSDDLAGLRLVRERGPAGMDIAAGEYAYTLAY-----FRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHV 287 (352)
T ss_pred hhCCCChhhHHHHHHHHhhCCCCCCEEecccccCHHH-----HHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCC
Confidence 999998 78899999999 8899999999999764 66666655 69999999999999999999999999999
Q ss_pred cEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCC-CCeeeE
Q 041113 807 MAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSC-RGFVEA 881 (983)
Q Consensus 807 ~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~-~pGlGv 881 (983)
+++.|++ .++++|++++++|.. . . ++ +....++.++++.+|+.+++ +|+ +|||||
T Consensus 288 ~~~~h~~------~~a~~hl~aa~~n~~--~---~--e~-------~~~~~~~~~~~~~~~~~~~~G~~~~~~~~PGLGv 347 (352)
T cd03328 288 DLSAHCA------PALHAHVACAVPRLR--H---L--EW-------FHDHVRIERMLFDGAPDPSGGALRPDLSRPGLGL 347 (352)
T ss_pred eeccCch------HHHHHHHHHhCCCCc--c---c--ee-------cccchhhhHHhccCCCcccCCEEeCCCCCCccce
Confidence 9776542 468899999998641 1 0 00 00111233455566777763 777 799999
Q ss_pred Eecc
Q 041113 882 SVAK 885 (983)
Q Consensus 882 ~~d~ 885 (983)
++|+
T Consensus 348 ~~d~ 351 (352)
T cd03328 348 ELRA 351 (352)
T ss_pred ecCC
Confidence 9993
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-55 Score=520.71 Aligned_cols=392 Identities=16% Similarity=0.135 Sum_probs=307.9
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++++++|++.|++ +||||||+||.|.+....... ..+.. . ....+...++++.+++++
T Consensus 136 ~~~~~i~~A~~~A~~-~~GPV~l~lP~Dv~~~~~~~~---------------~~~~~-~---~~~~~~~~~~~~~i~~a~ 195 (578)
T PRK06546 136 QAPRVLHSAIQHAVA-GGGVSVVTLPGDIADEPAPEG---------------FAPSV-I---SPRRPTVVPDPAEVRALA 195 (578)
T ss_pred HHHHHHHHHHHHHhc-CCCCEEEEcChhhhhcccccc---------------ccccc-c---ccCCCCCCCCHHHHHHHH
Confidence 367899999999997 679999999999543222100 00000 0 000012245677899999
Q ss_pred HHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 81 ELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
++|++||||+|++|+|++ ++.+++.+|||++|+||++|++ | ||+||++||++ +|+.|..++..++..+++
T Consensus 196 ~~L~~A~rPvii~G~g~~-~a~~~l~~lae~~g~Pv~~t~~-g------kg~~~~~hp~~--~G~~G~~~~~~~~~~l~~ 265 (578)
T PRK06546 196 DAINEAKKVTLFAGAGVR-GAHAEVLALAEKIKAPVGHSLR-G------KEWIQYDNPFD--VGMSGLLGYGAAHEAMHE 265 (578)
T ss_pred HHHHcCCCcEEEECcchH-HHHHHHHHHHHHhCcceEECcc-c------ccCCCCCCccc--cCCCCCCCCHHHHHHHHh
Confidence 999999999999999987 5678999999999999999997 6 89999999996 688887777777778899
Q ss_pred CCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~~ 240 (983)
|||||+||+++... .| .++.++||||.|+..++++++.++.|.+|++.+|++|.+.+.......|.+.+.....
T Consensus 266 aDlvl~lG~~~~~~---~~---~~~~~~I~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~L~~~~~~~~~~~~~~~~~ 339 (578)
T PRK06546 266 ADLLILLGTDFPYD---QF---LPDVRTAQVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLVKEKTDRRFLDRMLKKHA 339 (578)
T ss_pred CCEEEEEcCCCChh---hc---CCCCcEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhcccCChHHHHHHHHHHH
Confidence 99999999998521 12 2334799999999999999889999999999999999988764444567665543333
Q ss_pred HHHHHHH----hhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeE
Q 041113 241 MVASEIS----FQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRV 316 (983)
Q Consensus 241 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 316 (983)
.+..... .......++++..+++.|++.++++++++.|.|+ +..|..+++.. .+|++|+.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~G~----~~~~~~~~~~~-~~~~~~~~----------- 403 (578)
T PRK06546 340 RKLEKVVGAYTRKVEKHTPIHPEYVASILDELAADDAVFTVDTGM----CNVWAARYITP-NGRRRVIG----------- 403 (578)
T ss_pred HHHhhhhhhhccccCCCCCcCHHHHHHHHHHhccCCcEEEECCcH----HHHHHHHhcCC-CCCceEEc-----------
Confidence 2211111 1111235799999999999999999999999998 56666665543 44544442
Q ss_pred eecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCc
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEP 395 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~ 395 (983)
++++|+||| |+|+|||+++|+ +++||+|+|||||+|++|||+|+++ |++|+++||+||++|++++.....
T Consensus 404 s~~~gsmG~--~~paAiGa~la~p~~~vv~i~GDGsf~~~~~el~Ta~~--~~lpv~~vV~NN~~~g~i~~~q~~----- 474 (578)
T PRK06546 404 SFRHGSMAN--ALPHAIGAQLADPGRQVISMSGDGGLSMLLGELLTVKL--YDLPVKVVVFNNSTLGMVKLEMLV----- 474 (578)
T ss_pred cCCcccccc--hhHHHHHHHHhCCCCcEEEEEcCchHhhhHHHHHHHHH--hCCCeEEEEEECCccccHHHHHHh-----
Confidence 467899999 999999999999 9999999999999999999999999 999999999999999998642110
Q ss_pred ccccccccc-CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 396 RILDQYFYT-THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 396 ~~~~~~~~~-~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
...+.+++ .+++||.++|++||+++.+|++++||+++|+++++.++|+||||.+++..
T Consensus 475 -~~~~~~~~~~~~~df~~lA~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIev~~~~~~ 533 (578)
T PRK06546 475 -DGLPDFGTDHPPVDYAAIAAALGIHAVRVEDPKDVRGALREAFAHPGPALVDVVTDPNA 533 (578)
T ss_pred -cCCCcccccCCCCCHHHHHHHCCCeeEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCCc
Confidence 01111222 35799999999999999999999999999999999999999999998765
|
|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=527.26 Aligned_cols=402 Identities=17% Similarity=0.210 Sum_probs=310.2
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|++|++.|+++++|||||+||.|++..+.... ..+.........+.+...++++.+++++
T Consensus 133 ~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 197 (586)
T PRK06276 133 EIPEIFRAAFEIAKTGRPGPVHIDLPKDVQEGELDLE---------------KYPIPAKIDLPGYKPTTFGHPLQIKKAA 197 (586)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEcChhHHhhhhccc---------------cccccccccccCCCCCCCCCHHHHHHHH
Confidence 3688999999999999999999999998543221100 0000000000000112234567899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|.+||||+|++|.|++ .++.+++.+|+|++|+||++|++ | ||+||++||++ +|.+|..+....+..++
T Consensus 198 ~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~-~------kg~~p~~hp~~--~G~~G~~~~~~~~~~l~ 268 (586)
T PRK06276 198 ELIAEAERPVILAGGGVIISGASEELIELSELVKIPVCTTLM-G------KGAFPEDHPLA--LGMVGMHGTKAANYSVT 268 (586)
T ss_pred HHHHcCCCeEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCC-C------CccCCCCCccc--ccCCCCCCCHHHHHHHH
Confidence 999999999999999986 45678999999999999999997 6 89999999996 68887767666667889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC---CChhHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH---RSSKWCSFLR 236 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~---~~~~w~~~~~ 236 (983)
+|||||++|+++++..+..+....+..++||||.|+..+++++..++.|.+|++.+|++|.+.+... ....|.+.+.
T Consensus 269 ~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~ 348 (586)
T PRK06276 269 ESDVLIAIGCRFSDRTTGDISSFAPNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAELMKKEIKNKSEWLERVK 348 (586)
T ss_pred cCCEEEEECCCCCccccCCccccCCCCeEEEEECCHHHhCCcCCCceEEecCHHHHHHHHHHhhhhhcccchHHHHHHHH
Confidence 9999999999997665543432233457999999999999988899999999999999999876431 2345665544
Q ss_pred HHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCC-----CceEEEecCcchhhhhhhcCCCcccccccccccccCCCCC
Q 041113 237 ALDMMVASEISFQICADYSLTEPHVAHELSRALTS-----NSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPH 311 (983)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 311 (983)
..+....... ...+.++++..+++.|++.+++ +++|+.|+|+ +..|...++.+ ++|++|+
T Consensus 349 ~~~~~~~~~~---~~~~~~l~~~~~~~~l~~~l~~~~~~~~~iv~~d~G~----~~~~~~~~~~~-~~p~~~~------- 413 (586)
T PRK06276 349 KLKKESIPRM---DFDDKPIKPQRVIKELMEVLREIDPSKNTIITTDVGQ----NQMWMAHFFKT-SAPRSFI------- 413 (586)
T ss_pred HHHHhccccc---cCCCCCcCHHHHHHHHHHhccccCCCCCeEEEeCCcH----HHHHHHHhccc-CCCCeEE-------
Confidence 3332211110 0123569999999999999999 9999999998 55665555553 5555544
Q ss_pred cceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 312 QWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 312 ~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
.++++|+||| |+|+|||+++|. +++||+++|||||+|++|||+|++| |++|+++||+||++|++++..+..
T Consensus 414 ----~~~~~gsmG~--~lpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~~--~~lpv~~vV~NN~~~g~~~~~~~~ 485 (586)
T PRK06276 414 ----SSGGLGTMGF--GFPAAIGAKVAKPDANVIAITGDGGFLMNSQELATIAE--YDIPVVICIFDNRTLGMVYQWQNL 485 (586)
T ss_pred ----cCCCcccccc--chhHHHhhhhhcCCCcEEEEEcchHhhccHHHHHHHHH--hCCCeEEEEEeCCchHHHHHHHHH
Confidence 3578899999 999999999999 8999999999999999999999999 999999999999999998643211
Q ss_pred CCCCccccccccccC--CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 391 DRTEPRILDQYFYTT--HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~--~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
. ...++..+. +++||.++|++||+++.+|++++||+++|+++++.++|.||||.+++++
T Consensus 486 ~-----~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~i~~~~ 546 (586)
T PRK06276 486 Y-----YGKRQSEVHLGETPDFVKLAESYGVKADRVEKPDEIKEALKEAIKSGEPYLLDIIIDPAE 546 (586)
T ss_pred H-----hCCCcccccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecccc
Confidence 0 011111221 4689999999999999999999999999999998999999999998755
|
|
| >cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=488.32 Aligned_cols=347 Identities=18% Similarity=0.170 Sum_probs=278.5
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAK 572 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~ 572 (983)
|||++|+++.+++|++.|+.++.+.. ..++.++|||+|++|++||||+.. +++++...+...++.+.|.|+|++
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~----~~~~~v~V~v~t~~G~~G~Ge~~~--~~~~~~~~~~~~~~~l~p~LiG~~ 74 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTV----ATAPLVLIDLATDEGVTGHSYLFT--YTPAALKSLKQLLDDMAALLVGEP 74 (355)
T ss_pred CeeEEEEEEEEEccCCCcccccccee----ccCcEEEEEEEECCCCeEEEeeec--CCCCcHHHHHHHHHHHHHHhCCCC
Confidence 69999999999999999999988754 237889999999999999999642 334444445555677999999987
Q ss_pred ccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecC
Q 041113 573 ISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDS 652 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~ 652 (983)
.+ ...++.. ..... ... ...+....|++|||||||||+||.+|+|||+||||.+ ++|++|+++.
T Consensus 75 ~~-~~~~~~~-~~~~~-~~~--~~~~~~~~a~aaid~AlwDl~gk~~g~Pv~~LlGg~~----------~~v~~y~s~~- 138 (355)
T cd03321 75 LA-PAELERA-LAKRF-RLL--GYTGLVRMAAAGIDMAAWDALAKVHGLPLAKLLGGNP----------RPVQAYDSHG- 138 (355)
T ss_pred CC-hHHHHHH-HHHHH-Hhh--cCCcHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC----------CCeeEEEeCC-
Confidence 42 2222211 10100 011 1223456899999999999999999999999999975 5699998863
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..+++++.+++++++++||++||+|+|. .++++|+++++++|+++|+++.|++|+|++|++++|+++++.|+++++.||
T Consensus 139 ~~~~~~~~~~a~~~~~~Gf~~~KiKvg~-~~~~~d~~~v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~i 217 (355)
T cd03321 139 LDGAKLATERAVTAAEEGFHAVKTKIGY-PTADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGLTWI 217 (355)
T ss_pred CChHHHHHHHHHHHHHhhhHHHhhhcCC-CChHhHHHHHHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcCCCCEE
Confidence 4568899999999999999999999986 368899999999999999999999999999999999999999999999999
Q ss_pred ecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEE
Q 041113 733 EEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAV 809 (983)
Q Consensus 733 EeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~ 809 (983)
|||++ +++++++|++++++||++||+++++.+ +..+++. .+|++|+|++++||++++++++++|+++|++++
T Consensus 218 EeP~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~-----~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~ 292 (355)
T cd03321 218 EEPTLQHDYEGHARIASALRTPVQMGENWLGPEE-----MFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMS 292 (355)
T ss_pred ECCCCCcCHHHHHHHHHhcCCCEEEcCCCcCHHH-----HHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeec
Confidence 99998 788999999999999999999998763 5666654 479999999999999999999999999999976
Q ss_pred eCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeEEecc
Q 041113 810 VSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEASVAK 885 (983)
Q Consensus 810 ~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~ 885 (983)
+|.+ + ..++|++++++++.. . . +..+..+++.+|+.+++ +|++||||+++|
T Consensus 293 -~h~~-~----~~~~h~~aa~~~~~~-----~------------e-~~~~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d- 347 (355)
T cd03321 293 -SHLF-Q----EISAHLLAVTPTAHW-----L------------E-YVDWAGAILEPPLKFEDGNAVIPDEPGNGIIWR- 347 (355)
T ss_pred -ccch-H----HHHHHHHHhCCCcce-----e------------e-ccchHHHHhcCCcEEECCEEECCCCCcCCcccC-
Confidence 4432 2 247899998875310 0 0 00122345567788774 899999999999
Q ss_pred hhhhhhhc
Q 041113 886 ATHILQNL 893 (983)
Q Consensus 886 a~~~~~~~ 893 (983)
++.++++
T Consensus 348 -~~~l~~~ 354 (355)
T cd03321 348 -EKAVRKY 354 (355)
T ss_pred -HHHHHhh
Confidence 7777654
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-54 Score=484.90 Aligned_cols=342 Identities=26% Similarity=0.320 Sum_probs=282.4
Q ss_pred EEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCc--C-cCcccHHHHHHHHH-HHHhHhccCcc
Q 041113 498 MEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL--E-IHKENLLDAEEQLR-FLLHFMTGAKI 573 (983)
Q Consensus 498 v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~--~-~~~~~~~~~~~~l~-~~~~~l~g~~~ 573 (983)
|+++.+++|++.|+.++.+++ ..++.++|||+|++|++||||+.+. + ++.++...+...+. .+.|.++|+++
T Consensus 1 ~~~~~~~~pl~~p~~~~~~~~----~~~~~~~Vrv~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~p~l~g~~~ 76 (354)
T cd03317 1 IELFHVRMPLKFPFETSFGTL----NEREFLIVELTDEEGITGYGEVVAFEGPFYTEETNATAWHILKDYLLPLLLGREF 76 (354)
T ss_pred CEEEEEEecccCceEccceEE----EeeeEEEEEEEECCCCeEEEecCCCCCCcccCCCHHHHHHHHHHHHHHHHcCCCC
Confidence 478899999999999998765 3489999999999999999999864 2 34566665555555 47899999988
Q ss_pred cccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCC
Q 041113 574 SYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSN 653 (983)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~ 653 (983)
.+...++.. +.. . ...+++++||||||||++||.+|+|||+||||. ++++++|+++...
T Consensus 77 ~~~~~~~~~-----~~~-~-----~~~~~a~aaid~AlwDl~gk~~g~Pv~~LLGg~----------~~~v~~~~s~~~~ 135 (354)
T cd03317 77 SHPEEVSER-----LAP-I-----KGNNMAKAGLEMAVWDLYAKAQGQSLAQYLGGT----------RDSIPVGVSIGIQ 135 (354)
T ss_pred CCHHHHHHH-----HHH-h-----cCChHHHHHHHHHHHHHHHHHcCCCHHHHhCCC----------CCeEEeeEEEeCC
Confidence 765444321 111 1 124579999999999999999999999999994 3689999887544
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceee
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIE 733 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iE 733 (983)
.+++++.+++++++++||++||+|++ ++.|+++|++||+++| ++.|++|+|++||.++|. +++.|+++++.|||
T Consensus 136 ~~~~~~~~~~~~~~~~Gf~~~KiKv~----~~~d~~~l~~vr~~~g-~~~l~lDaN~~~~~~~a~-~~~~l~~~~i~~iE 209 (354)
T cd03317 136 DDVEQLLKQIERYLEEGYKRIKLKIK----PGWDVEPLKAVRERFP-DIPLMADANSAYTLADIP-LLKRLDEYGLLMIE 209 (354)
T ss_pred CcHHHHHHHHHHHHHcCCcEEEEecC----hHHHHHHHHHHHHHCC-CCeEEEECCCCCCHHHHH-HHHHhhcCCccEEE
Confidence 44588999999999999999999995 3689999999999998 999999999999999985 79999999999999
Q ss_pred cCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEe
Q 041113 734 EPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVV 810 (983)
Q Consensus 734 eP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~ 810 (983)
||++ |++++++|++++++||++||++++..+ +..+++.+ +|++|+|++++||++++++++++|+++|+++++
T Consensus 210 eP~~~~d~~~~~~l~~~~~~pia~dEs~~~~~~-----~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~ 284 (354)
T cd03317 210 QPLAADDLIDHAELQKLLKTPICLDESIQSAED-----ARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWC 284 (354)
T ss_pred CCCChhHHHHHHHHHhhcCCCEEeCCccCCHHH-----HHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEe
Confidence 9998 677899999999999999999999764 66666654 699999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeEEecch
Q 041113 811 SAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEASVAKA 886 (983)
Q Consensus 811 ~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~a 886 (983)
|++++|+++.++++|+++ +++.. ++... .++..++.+|++.+|+.+++ +|++||||+++|
T Consensus 285 g~~~es~l~~~a~~hla~-~~~~~----------~~~~~---~~~~~~~~~dl~~~~~~~~~G~~~~p~~pGlG~~~d-- 348 (354)
T cd03317 285 GGMLESGIGRAHNVALAS-LPNFT----------YPGDI---SASSRYFEEDIITPPFELENGIISVPTGPGIGVTVD-- 348 (354)
T ss_pred cCcccchHHHHHHHHHHh-CCCCC----------Ccccc---CcchhhhhhccccCCeEeeCCEEECCCCCcCceecC--
Confidence 999999999999999964 55321 00010 11234677788878888874 999999999999
Q ss_pred hhhhh
Q 041113 887 THILQ 891 (983)
Q Consensus 887 ~~~~~ 891 (983)
++.++
T Consensus 349 ~~~l~ 353 (354)
T cd03317 349 REALK 353 (354)
T ss_pred HHHhc
Confidence 66544
|
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-54 Score=518.85 Aligned_cols=400 Identities=16% Similarity=0.125 Sum_probs=302.4
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|+||++.|+++|||||||+||.|.+..+..... ...+...... .. +...++++.+++++
T Consensus 137 ~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv~~~~~~~~~-------------~~~~~~~~~~-~~--~~~~~~~~~~~~~~ 200 (554)
T TIGR03254 137 DIGIGIARAIRTAVSGRPGGVYLDLPAAVLGQTMEAEK-------------AKKTLVKVVD-PA--PKQLPSPDSVDRAV 200 (554)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCHHHhhccccccc-------------cccccccccC-CC--CCCCCCHHHHHHHH
Confidence 36789999999999999999999999996433321100 0000000000 00 11234677899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|.|++ .++.+++.+|+|++|+||++|++ | ||+||++||++ +|.. .+..++
T Consensus 201 ~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~-g------kg~~p~~hp~~--~g~~-------~~~~~~ 264 (554)
T TIGR03254 201 ELLKDAKRPLILLGKGAAYAQADEEIREFVEKTGIPFLPMSM-A------KGLLPDTHPQS--AAAA-------RSFALA 264 (554)
T ss_pred HHHHhCCCCEEEECCCccccChHHHHHHHHHHHCCCEEEcCC-c------ceeCCCCCchh--hhHH-------HHHHHh
Confidence 999999999999999987 45678999999999999999997 6 89999999996 4432 235678
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC---CChhHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH---RSSKWCSFL 235 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~---~~~~w~~~~ 235 (983)
+|||||++|+++++..+.++...+. ..++||||.|+..++.+++.++.|.+|++.+|++|.+.+... ....|.+.+
T Consensus 265 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~ 344 (554)
T TIGR03254 265 EADVVMLVGARLNWLLSHGKGKLWGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAAKNGGVKPPADWRNAI 344 (554)
T ss_pred cCCEEEEECCCCchhhccCchhhcCCCCcEEEcCCCHHHhCCCcCCceEEecCHHHHHHHHHHHhhhccccchHHHHHHH
Confidence 9999999999998766654433343 347999999999999999999999999999999999877431 245677655
Q ss_pred HHHHHHHHHHHHhhh-cccCCCCHHHHHHHHHhhcCC--CceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCc
Q 041113 236 RALDMMVASEISFQI-CADYSLTEPHVAHELSRALTS--NSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQ 312 (983)
Q Consensus 236 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~--~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 312 (983)
...+..+........ ....++++..+++.|++.+++ +.+++.|.|+ +..|...++++ .+|++|+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~~ivv~d~~~----~~~~~~~~~~~-~~p~~~~-------- 411 (554)
T TIGR03254 345 KTKSEKNVAKMAERLSASESPMNYHGALEAIRDVLKDNPDIYLVNEGAN----TLDLARNVIDM-YKPRHRL-------- 411 (554)
T ss_pred HHHHHhchhhhhhhcccCCCCcCHHHHHHHHHHhcCCCCCEEEEeCCch----HHHHHHHhccc-CCCCcEe--------
Confidence 544333221111111 123579999999999999975 6667777776 44555555543 4555444
Q ss_pred ceeEeecCCCCCccchHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCC
Q 041113 313 WIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADR 392 (983)
Q Consensus 313 ~~~~~~~~G~mG~~g~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~ 392 (983)
.++++|+||| |+|+|||+++|.+++||+|+|||||||++|||+|++| |++|+++||+||++|..-.+. .
T Consensus 412 ---~~~~~gsmG~--~lpaaiGaala~~~~vv~i~GDGsf~m~~~EL~Ta~r--~~l~v~~vV~NN~~~~~~~~~--~-- 480 (554)
T TIGR03254 412 ---DVGTWGVMGI--GMGYAIAAAVETGKPVVALEGDSAFGFSGMEVETICR--YNLPVCVVIFNNGGIYRGDDV--N-- 480 (554)
T ss_pred ---eCCCCCcCCc--hHHHHHHHHhcCCCcEEEEEcCchhcccHHHHHHHHH--cCCCEEEEEEeChhhhhhhhh--h--
Confidence 3578899999 9999999999989999999999999999999999999 999999999999987211000 0
Q ss_pred CCccccccccc-c-CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHH
Q 041113 393 TEPRILDQYFY-T-THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFH 459 (983)
Q Consensus 393 ~~~~~~~~~~~-~-~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~ 459 (983)
........ + .+++||.++|++||+++++|++.+||+++|+++++.++|+||||.+++++.++.-
T Consensus 481 ---~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIev~id~~~~~~~~ 546 (554)
T TIGR03254 481 ---VVGADPAPTVLVHGARYDKMMKAFGGVGYNVTTPDELKAALNEALASGKPTLINAVIDPSAGTESG 546 (554)
T ss_pred ---hcCCCCCccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEECCCcCCccc
Confidence 00001111 1 1579999999999999999999999999999999899999999999988776653
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >PRK14017 galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=489.28 Aligned_cols=342 Identities=19% Similarity=0.218 Sum_probs=272.3
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAK 572 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~ 572 (983)
|||++|+++.+. + ..++|||+|++|++||||+.... .. ..+...++.+.|.|+|++
T Consensus 1 mkI~~i~~~~~~-----~---------------~~vlV~v~t~dG~~G~GE~~~~~-~~---~~~~~~~~~~~p~l~G~d 56 (382)
T PRK14017 1 MKITKLETFRVP-----P---------------RWLFLKIETDEGIVGWGEPVVEG-RA---RTVEAAVHELADYLIGKD 56 (382)
T ss_pred CeEEEEEEEEEC-----C---------------CEEEEEEEECCCCeEEeccccCC-ch---HHHHHHHHHHHHHhCCCC
Confidence 699999987651 1 13789999999999999986432 11 223344567899999999
Q ss_pred ccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecC
Q 041113 573 ISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDS 652 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~ 652 (983)
+.+++.++..+.. ...........+|++|||||||||+||.+|+|||+||||+. +++|++|+++ +
T Consensus 57 ~~~~~~~~~~l~~-----~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LLGg~~---------r~~i~~~~~~-~ 121 (382)
T PRK14017 57 PRRIEDHWQVMYR-----GGFYRGGPILMSAIAGIDQALWDIKGKALGVPVHELLGGLV---------RDRIRVYSWI-G 121 (382)
T ss_pred HHHHHHHHHHHHH-----hcccCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCc---------cceeeEeEeC-C
Confidence 9887665543211 00011122356799999999999999999999999999975 5789999876 3
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCC-------CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcc
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARR-------ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIK 725 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~-------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~ 725 (983)
..+++++.+++++++++||++||+|+|.. .++++|+++|+++|+++|+++.|++|||++||.++|+++++.|+
T Consensus 122 ~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~ 201 (382)
T PRK14017 122 GDRPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFHGRVHKPMAKVLAKELE 201 (382)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 46889999999999999999999999631 13578999999999999999999999999999999999999999
Q ss_pred cCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHH
Q 041113 726 DCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQ 802 (983)
Q Consensus 726 ~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~ 802 (983)
++++.|||||++ +++++++|++++++||++|||+++..+ +..+++.+ +|++|+|++++||++++++++++|+
T Consensus 202 ~~~~~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~-----~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~ 276 (382)
T PRK14017 202 PYRPMFIEEPVLPENAEALPEIAAQTSIPIATGERLFSRWD-----FKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAE 276 (382)
T ss_pred ccCCCeEECCCCcCCHHHHHHHHhcCCCCEEeCCccCCHHH-----HHHHHHcCCCCeEecCccccCCHHHHHHHHHHHH
Confidence 999999999998 788999999999999999999999764 66666655 7999999999999999999999999
Q ss_pred HcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccch-----hcccccCCC-CCceee----c
Q 041113 803 RHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTY-----QWLKEDVTT-DPISIC----H 872 (983)
Q Consensus 803 ~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~d~~~-~p~~~~----~ 872 (983)
++|+++++|++.+ ++++++++|+++++++.. . .+ +++++. .++ +.+.. +|+.++ .
T Consensus 277 ~~gi~~~~h~~~~-~i~~aa~~hl~aa~~~~~--~---~e--------~~l~~~~~~~~~~~-~~~~~~~~~~~~dG~~~ 341 (382)
T PRK14017 277 AYDVALAPHCPLG-PIALAACLQVDAVSPNAF--I---QE--------QSLGIHYNQGADLL-DYVKNKEVFAYEDGFVA 341 (382)
T ss_pred HcCCeEeecCCCC-HHHHHHHHHHHHhCccce--e---ee--------ecccccccchhhHH-HhcccCCCCcccCCeEE
Confidence 9999988877665 899999999999988531 0 01 111111 111 11111 466666 3
Q ss_pred cCCCCeeeEEecchhhhhhhccc
Q 041113 873 NSCRGFVEASVAKATHILQNLQI 895 (983)
Q Consensus 873 ~P~~pGlGv~~d~a~~~~~~~~~ 895 (983)
+|++|||||++| ++.++++..
T Consensus 342 vp~~PGLGv~~d--~~~l~~~~~ 362 (382)
T PRK14017 342 IPTGPGLGIEID--EAKVRERAK 362 (382)
T ss_pred CCCCCcCCcCCC--HHHHHHhhh
Confidence 999999999999 888888864
|
|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-55 Score=524.14 Aligned_cols=400 Identities=18% Similarity=0.211 Sum_probs=310.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+++.++||++.|.++++|||||+||.|.+......... .+... ......+...++++.++++++
T Consensus 138 ~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~--------------~~~~~--~~~~~~~~~~~~~~~i~~~~~ 201 (574)
T PRK06882 138 IPSTIKKAFYIASTGRPGPVVIDIPKDMVNPANKFTYE--------------YPEEV--SLRSYNPTVQGHKGQIKKALK 201 (574)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEecCHHHhhhhcccccc--------------cCccc--ccccCCCCCCCCHHHHHHHHH
Confidence 67899999999999999999999999953211100000 00000 000000112245678999999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
+|.+||||+||+|+|++ .++.+++.+|+|++|+||++|++ | ||+||++||++ +|.+|..++..++..+++
T Consensus 202 ~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~-g------kg~~~~~hp~~--~G~~G~~~~~~~~~~l~~ 272 (574)
T PRK06882 202 ALLVAKKPVLFVGGGVITAECSEQLTQFAQKLNLPVTSSLM-G------LGAYPSTDKQF--LGMLGMHGTYEANNAMHE 272 (574)
T ss_pred HHHhCCCCEEEECCCccccchHHHHHHHHHHhCCCEEEcCc-c------CcCCCCCChhh--cCCCcccccHHHHHHHHh
Confidence 99999999999999987 45678999999999999999996 7 89999999996 688887777777778899
Q ss_pred CCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-------CChhHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-------RSSKWCS 233 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-------~~~~w~~ 233 (983)
|||||+||+++++..+..|....+..++||||.|+..++++++.++.|.+|++.+|++|.+.+... ....|.+
T Consensus 273 aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~ 352 (574)
T PRK06882 273 SDLILGIGVRFDDRTTNNLAKYCPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLLEEENLAKSQTDLTAWWQ 352 (574)
T ss_pred CCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhcCccCCceEEecCHHHHHHHHHHHhhhhcccccccccHHHHH
Confidence 999999999998776654433333347999999999999999999999999999999998866321 2245555
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcc
Q 041113 234 FLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQW 313 (983)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 313 (983)
.+...+........ ....++++..+++.|++.++++.+++.|+|+ +..|..+++.+ ..|++|+
T Consensus 353 ~~~~~~~~~~~~~~---~~~~~i~~~~~~~~l~~~l~~~~ii~~d~g~----~~~~~~~~~~~-~~p~~~~--------- 415 (574)
T PRK06882 353 QINEWKAKKCLEFD---RTSDVIKPQQVVEAIYRLTNGDAYVASDVGQ----HQMFAALHYPF-DKPRRWI--------- 415 (574)
T ss_pred HHHHHHHhChhhhc---cCCCCcCHHHHHHHHHhhcCCCeEEEecCch----hHHHHHHhccc-cCCCcEE---------
Confidence 44333221111100 1134689999999999999999999999998 66777666664 5555544
Q ss_pred eeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCC
Q 041113 314 IRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADR 392 (983)
Q Consensus 314 ~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~ 392 (983)
.++++|+||| |+|+|||+++|. +++||+++|||||+|++|||+|+++ |++|+++||+||++|++++..+..
T Consensus 416 --~~~~~g~mG~--~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~--~~lpv~~vV~NN~~~~~i~~~q~~-- 487 (574)
T PRK06882 416 --NSGGAGTMGF--GLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELSTAKQ--YDIPVVIVSLNNRFLGMVKQWQDL-- 487 (574)
T ss_pred --eCCCcccccc--hhHHHHHHHhhcCCCcEEEEEcchhhhccHHHHHHHHH--hCCCeEEEEEECchhHHHHHHHHH--
Confidence 3578899999 999999999999 8999999999999999999999999 999999999999999998754211
Q ss_pred CCccccc-ccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-CCCEEEEEEcCcccc
Q 041113 393 TEPRILD-QYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-GTDRVIEVESCIDAN 455 (983)
Q Consensus 393 ~~~~~~~-~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-~~p~lIeV~~~~~~~ 455 (983)
.+. +.... ..++||.++|++||+++++|++.+||+++|+++++. ++|+||||.++++++
T Consensus 488 ----~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~liev~i~~~~~ 550 (574)
T PRK06882 488 ----IYSGRHSQVYMNSLPDFAKLAEAYGHVGIQIDTPDELEEKLTQAFSIKDKLVFVDVNVDETEH 550 (574)
T ss_pred ----hcCCcccccCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhcCCCcEEEEEEecCccc
Confidence 011 11111 135899999999999999999999999999999874 899999999997654
|
|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-55 Score=521.03 Aligned_cols=400 Identities=20% Similarity=0.238 Sum_probs=311.2
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|+||++.|+++++|||||+||.|.+..+... +.......+...+...+++..+++++
T Consensus 134 ~~~~~v~~A~~~A~~~~~GPV~i~iP~dv~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~i~~~~ 195 (558)
T TIGR00118 134 DIPRIIKEAFHIATTGRPGPVLVDLPKDVTTAEIEY------------------PYPEKVNLPGYRPTVKGHPLQIKKAA 195 (558)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEcChhhhhhhccc------------------cccccccccCCCCCCCCCHHHHHHHH
Confidence 367899999999999999999999999964322110 00000000000011234556799999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|.+||||+||+|+|++ .++.++|.+|+|++|+||++|++ | ||+||++||++ +|.+|..+...++..+.
T Consensus 196 ~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~pv~tt~~-~------kg~~~e~hp~~--~G~~g~~~~~~~~~~l~ 266 (558)
T TIGR00118 196 ELINLAKKPVILVGGGVIIAGASEELKELAERIQIPVTTTLM-G------LGSFPEDHPLS--LGMLGMHGTKTANLAVH 266 (558)
T ss_pred HHHHhCCCcEEEECCCccccchHHHHHHHHHHhCCCEEEccc-c------CCCCCCCCccc--cCCCCCCCCHHHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999996 78888777666677889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC---CChhHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH---RSSKWCSFLR 236 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~---~~~~w~~~~~ 236 (983)
+||+||+||+++++..+..|...++..++||||.|+..++.++..++.+.+|++.+|++|.+.+... ....|.+.++
T Consensus 267 ~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 346 (558)
T TIGR00118 267 ECDLIIAVGARFDDRVTGNLAKFAPNAKIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKLFELKERKESAWLEQIN 346 (558)
T ss_pred hCCEEEEECCCCCccccCchhhcCCCCcEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhhhccccCcHHHHHHHH
Confidence 9999999999997765544433333457999999999999888899999999999999999876431 2345665544
Q ss_pred HHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeE
Q 041113 237 ALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRV 316 (983)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 316 (983)
..+...... ....+.++++..++++|++.+|++++++.|+|+ +..|..+++.+ ++|++|+ .
T Consensus 347 ~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~----~~~~~~~~~~~-~~p~~~~-----------~ 407 (558)
T TIGR00118 347 KWKKEYPLK---MDYTEEGIKPQQVIEELSRVTKDEAIVTTDVGQ----HQMWAAQFYPF-RKPRRFI-----------T 407 (558)
T ss_pred HHHHhChhh---ccCCCCCcCHHHHHHHHHhhCCCCeEEEeCCcH----HHHHHHHhccc-CCCCeEE-----------e
Confidence 333221110 011245799999999999999999999999998 55666666553 4555444 3
Q ss_pred eecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCc
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEP 395 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~ 395 (983)
++++|+||| ++|+|||+++|. +++||+++|||||+|++|||+|+++ |++|+++||+||++|++++..+....
T Consensus 408 ~~~~g~mG~--~l~aaiGa~la~~~~~vv~~~GDG~f~~~~~eL~ta~~--~~l~~~~vv~NN~~~~~~~~~q~~~~--- 480 (558)
T TIGR00118 408 SGGLGTMGF--GLPAAIGAKVAKPESTVICITGDGSFQMNLQELSTAVQ--YDIPVKILILNNRYLGMVRQWQELFY--- 480 (558)
T ss_pred CCccccccc--hhhHHHhhhhhCCCCcEEEEEcchHHhccHHHHHHHHH--hCCCeEEEEEeCCchHHHHHHHHHhc---
Confidence 578899999 999999999999 8999999999999999999999999 99999999999999999864321000
Q ss_pred ccccccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 396 RILDQYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 396 ~~~~~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
..++..+ .+++||.++|++||+++.+|++.+||+++|+++++.++|+||||.+++++.
T Consensus 481 --~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~~p~liev~~~~~~~ 540 (558)
T TIGR00118 481 --EERYSHTHMGSLPDFVKLAEAYGIKGIRIEKPEELDEKLKEALSSNEPVLLDVVVDKPEN 540 (558)
T ss_pred --CCceeeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEeCCccc
Confidence 0111111 236899999999999999999999999999999999999999999997553
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=485.81 Aligned_cols=346 Identities=16% Similarity=0.151 Sum_probs=275.0
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHH-HHHHhHhccC
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQL-RFLLHFMTGA 571 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l-~~~~~~l~g~ 571 (983)
|||++|+++.+ .| .++.++|||+|++|++||||+.+.. ++. .+...+ +.++|.|+|+
T Consensus 1 mkI~~v~~~~~-----~~-------------~~~~vlVri~td~G~~G~GE~~~~~---~~~-~~~~~~~~~l~p~l~G~ 58 (404)
T PRK15072 1 MKIVDAEVIVT-----CP-------------GRNFVTLKITTDDGVTGLGDATLNG---REL-AVASYLQDHVCPLLIGR 58 (404)
T ss_pred CeeEEEEEEEE-----CC-------------CCcEEEEEEEeCCCCeEEEecccCC---chH-HHHHHHHHHHHHHcCCC
Confidence 69999998643 11 1356899999999999999986432 111 223333 4689999999
Q ss_pred cccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeec
Q 041113 572 KISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALID 651 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~ 651 (983)
++.+++.++..+ +.............|++|||||||||+||.+|+|||+||||.. +++|++|++.
T Consensus 59 d~~~~e~~~~~l-----~~~~~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LLGG~~---------r~~v~~y~~~- 123 (404)
T PRK15072 59 DAHRIEDIWQYL-----YRGAYWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLLGGAS---------REGVMVYGHA- 123 (404)
T ss_pred ChhHHHHHHHHH-----HHhcccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcCCCc---------cCceEEEEeC-
Confidence 998876555322 1111011222456799999999999999999999999999975 5789999764
Q ss_pred CCCCHHHHHHHHHHhhhcCCCEEEEeccCCC---------------------------------ChHHHHHHHHHHHHHc
Q 041113 652 SNKSPVEVASIATTLVEEGFTAIKLKVARRA---------------------------------DPIKDAEVIQEVRKKV 698 (983)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~---------------------------------~~~~d~~~v~~vr~~~ 698 (983)
...+++++.+++++++++||++||+|+|.+. .++.|+++|++||+++
T Consensus 124 ~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~ 203 (404)
T PRK15072 124 NGRDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKF 203 (404)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhh
Confidence 3457888999999999999999999997310 0134578999999999
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 699 GHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 699 g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
|+++.|++|+|++||+++|+++++.|+++++.|||||++ +.+++++|++++++||++||++++..+ +..+++.
T Consensus 204 G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~iPIa~dEs~~~~~~-----~~~li~~ 278 (404)
T PRK15072 204 GFDLHLLHDVHHRLTPIEAARLGKSLEPYRLFWLEDPTPAENQEAFRLIRQHTTTPLAVGEVFNSIWD-----CKQLIEE 278 (404)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhccccCCcEEECCCCccCHHHHHHHHhcCCCCEEeCcCccCHHH-----HHHHHHc
Confidence 999999999999999999999999999999999999998 788999999999999999999998764 6666665
Q ss_pred C-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCcc
Q 041113 777 G-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLG 854 (983)
Q Consensus 777 ~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~ 854 (983)
+ +|++|+|++++|||++++|++++|+++|++++.|++. +|+++.++++|++++++|+.+ +.+.
T Consensus 279 ~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~~~s~l~~aa~~hlaaa~~~~~~---------------~e~~ 343 (404)
T PRK15072 279 QLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPTDLSPVCMAAALHFDLWVPNFGI---------------QEYM 343 (404)
T ss_pred CCCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCcccchHHHHHHHHHHHhccccce---------------eeec
Confidence 5 6999999999999999999999999999998876554 699999999999999886421 0011
Q ss_pred chhcccccCCCCCceeec----cCCCCeeeEEecchhhhhhhccccc
Q 041113 855 TYQWLKEDVTTDPISICH----NSCRGFVEASVAKATHILQNLQINN 897 (983)
Q Consensus 855 ~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~~ 897 (983)
.+..+..|++.+|+.+++ +|++||||+++| ++.++++...+
T Consensus 344 ~~~~~~~~~~~~~~~~~~G~l~vpd~PGLGi~~d--~~~l~~~~~~~ 388 (404)
T PRK15072 344 GHSEETLEVFPHSYTFEDGYLHPGDAPGLGVDFD--EKLAAKYPYEP 388 (404)
T ss_pred ccchhhHhhcCCCCeEECCEEECCCCCCCCeeEC--HHHHhhCCCcc
Confidence 111233466667888773 999999999999 88888886543
|
|
| >PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-53 Score=509.20 Aligned_cols=409 Identities=30% Similarity=0.460 Sum_probs=307.6
Q ss_pred HHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccc-cccccccchhhHHHHHHHHhcC
Q 041113 8 SAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQH-SHACKSYTYCQMAEVLELVQGV 86 (983)
Q Consensus 8 ~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~L~~A 86 (983)
+|+..|.++++|||||+||.|++..+........ .+ ..+... .... ..+...+++..+++++++|++
T Consensus 154 ~a~~~a~~~~~GPV~i~iP~Dv~~~~~~~~~~~~------~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~- 221 (568)
T PRK07449 154 DAALAAQTLQAGPVHINCPFREPLYPDDDDDTGS------PW---LAPLGD--WWQDDWLRQTVQPEVTSQRDWDIWRQ- 221 (568)
T ss_pred HHHHHhcCCCCCCEEEeCCCCCCCCCCCcccccc------cc---cccccc--cccccccccccCccccchhhhhhhcc-
Confidence 4444588999999999999997544321000000 00 000000 0000 000122445678999999998
Q ss_pred CceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhh-ccCccccccCCCCEEE
Q 041113 87 NKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHA-LLSESVKDWIQFDVII 165 (983)
Q Consensus 87 krPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~-~~~~~~~~~~~aDlvl 165 (983)
|||+||+|+|++.. .+++.+|||++|+||++|++ + |+.+|++||++ +|.+|.. +.......+++||+||
T Consensus 222 krPvii~G~g~~~~-~~~l~~lae~~g~PV~tt~~-~------~~~~~~~hp~~--~G~~g~~~~~~~~~~~l~~aD~vl 291 (568)
T PRK07449 222 KRGVVIAGRLSAEE-GQAIAALAQLLGWPLLADPL-S------PRNYAPLHPQP--IPCYDLWLRNPKAAEELLQPDIVI 291 (568)
T ss_pred CCeEEEECCCChHH-HHHHHHHHHHCCCeEEEecC-C------CCCCCCCCccc--cchHHHHhcCchhhhhcCCCCEEE
Confidence 99999999998743 38999999999999999997 5 79999999995 7888866 4445556788999999
Q ss_pred EeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHH
Q 041113 166 QIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASE 245 (983)
Q Consensus 166 ~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~~~~~~~ 245 (983)
++|+++++..+..|.... ..++||||.|+..+++++..++.+.+|++.+|++ ... .....|...++..++.+...
T Consensus 292 ~vG~~l~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~-~~~---~~~~~~~~~~~~~~~~~~~~ 366 (568)
T PRK07449 292 QFGSPPTSKRLLQWLADC-EPEYWVVDPGPGRLDPAHHATRRLTASVATWLEA-HPA---EKRKPWLQEWQALNEKAREA 366 (568)
T ss_pred EeCCCCCchhHHHHHhcC-CCCEEEECCCCCcCCCCCCceEEEEEcHHHHHHh-ccc---ccchHHHHHHHHHHHHHHHH
Confidence 999999777666664332 3379999999999999999999999999999999 322 12346776665544443322
Q ss_pred HHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCc
Q 041113 246 ISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGI 325 (983)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~ 325 (983)
..... .+.++++..+++.|++.+|++++|++|+|++++... .++.. ..++++ + ...++|+|||
T Consensus 367 ~~~~~-~~~~i~~~~~~~~l~~~l~~~~iv~~~~g~~~~~~~----~~~~~-~~~~~~----------~-~~~g~~~~G~ 429 (568)
T PRK07449 367 VREQL-AEDTFTEAKVAAALADLLPEGGQLFVGNSLPVRDVD----AFGQL-PDGYPV----------Y-SNRGASGIDG 429 (568)
T ss_pred HHHHh-ccCCccHHHHHHHHHHhCCCCCeEEEECcHHHHHHH----HccCc-CCCceE----------E-ecCCccchhh
Confidence 22111 245799999999999999999999999998544332 22221 222222 2 2456788999
Q ss_pred cchHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 326 DGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 326 ~g~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
++|+|||+++|.+++||+|+|||||+|++|||+|++| |++|+++||+||++|++++++..... .....+++.+.
T Consensus 430 --~lpaaiGaala~~~~vv~i~GDGsf~~~~~eL~Ta~r--~~l~i~ivVlNN~g~~~~~~~~~~~~--~~~~~~~~~~~ 503 (568)
T PRK07449 430 --LLSTAAGVARASAKPTVALIGDLSFLHDLNGLLLLKQ--VPAPLTIVVVNNNGGGIFSLLPQPEE--EPVFERFFGTP 503 (568)
T ss_pred --HHHHHHHHHhcCCCCEEEEechHHhhcCcHHHHhhcc--cCCCeEEEEEECCCCccccCCCCCCC--cchhhHhhcCC
Confidence 9999999999988999999999999999999999998 99999999999999998876532211 11223445555
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHHHHHHH
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFA 466 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~~~~~~ 466 (983)
.++||+++|++||+++++|++++||+++|+++++.++|+||||.+++++.++.++++...+
T Consensus 504 ~~~df~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~p~lIev~id~~~~~~~~~~~~~~~ 564 (568)
T PRK07449 504 HGVDFAHAAAMYGLEYHRPETWAELEEALADALPTPGLTVIEVKTNRSQGAQLLQALLAQV 564 (568)
T ss_pred CCCCHHHHHHHcCCCccCCCCHHHHHHHHHHHhcCCCCEEEEEeCChhhhHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999999999998887644
|
|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=520.26 Aligned_cols=396 Identities=18% Similarity=0.165 Sum_probs=304.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
++++++||++.|+++ +|||||+||.|.+....... .+... .. ....+++..++++++
T Consensus 139 ~~~~i~rA~~~A~~~-~GPV~i~iP~Dv~~~~~~~~----------------~~~~~--~~----~~~~~~~~~i~~a~~ 195 (588)
T PRK07525 139 MAEVLNRVFDKAKRE-SGPAQINIPRDYFYGVIDVE----------------IPQPV--RL----ERGAGGEQSLAEAAE 195 (588)
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEcChhHhhhhcccc----------------cCccc--cC----CCCCCCHHHHHHHHH
Confidence 688999999999997 69999999999643221100 00000 00 012346678999999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
+|.+||||+|++|+|++ .++.+++++|||++|+||++|++ | ||+||++||++ +|.+|..++...++.+++
T Consensus 196 ~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tT~~-g------kg~~p~~hpl~--~G~~g~~g~~~~~~~~~~ 266 (588)
T PRK07525 196 LLSEAKFPVILSGAGVVLSDAIEECKALAERLDAPVACGYL-H------NDAFPGSHPLW--VGPLGYNGSKAAMELIAK 266 (588)
T ss_pred HHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCeEEccc-c------cccCCCCCccc--cccCcccCcHHHHHHHHh
Confidence 99999999999999986 45678999999999999999997 6 89999999996 788876666666677899
Q ss_pred CCEEEEeCCccccHHHHHHH--Hhc-CCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-----CChhHH
Q 041113 161 FDVIIQIGSRITSKRISQMI--EEC-FPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-----RSSKWC 232 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~--~~~-~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-----~~~~w~ 232 (983)
||+||+||+++++..+..+. ..+ +..++||||.|+..++++++.++.|++|++.+|++|.+.+... ....|.
T Consensus 267 aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~ 346 (588)
T PRK07525 267 ADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVARELLARLAERLAGDAGREERK 346 (588)
T ss_pred CCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCCceEecCHHHHHHHHHHhhhhhccccccchhhh
Confidence 99999999999765432111 122 2357999999999999999999999999999999998877431 122333
Q ss_pred HHHHHHHHHHHHHHH---h-hh------------cccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCccc
Q 041113 233 SFLRALDMMVASEIS---F-QI------------CADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTC 296 (983)
Q Consensus 233 ~~~~~~~~~~~~~~~---~-~~------------~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~ 296 (983)
+.+......+..... . .. ...+++++.++++.|++.+|++++++.|.|+ +..|..+++++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~ivv~d~G~----~~~~~~~~~~~ 422 (588)
T PRK07525 347 ALIAAEKSAWEQELSSWDHEDDDPGTDWNEEARARKPDYMHPRQALREIQKALPEDAIVSTDIGN----NCSIANSYLRF 422 (588)
T ss_pred hhhhhhHHHHHHHHHHHHhccccccccccccccccCCCCcCHHHHHHHHHHhCCCCcEEEECCcc----cHHHHHHhccc
Confidence 222211111111110 0 00 1135799999999999999999999999999 66677666664
Q ss_pred ccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEE
Q 041113 297 THTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLV 375 (983)
Q Consensus 297 ~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV 375 (983)
.+|++|+ .++++|+||| |+|+|||+++|. +++||+++|||||+|++|||+|+++ |++|+++||
T Consensus 423 -~~p~~~~-----------~~~~~g~mG~--glp~aiGa~la~p~r~vv~i~GDG~f~~~~~el~Ta~~--~~lpv~ivV 486 (588)
T PRK07525 423 -EKGRKYL-----------APGSFGNCGY--AFPAIIGAKIACPDRPVVGFAGDGAWGISMNEVMTAVR--HNWPVTAVV 486 (588)
T ss_pred -CCCCeEE-----------cccccccccc--HHHHHHHHHHhCCCCcEEEEEcCchHhccHHHHHHHHH--hCCCeEEEE
Confidence 5666555 3578899999 999999999999 9999999999999999999999999 999999999
Q ss_pred EeCCCCccccCCCCCCCCCcccccccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc---CCCEEEEEEc
Q 041113 376 INNHGGAIFSLLPIADRTEPRILDQYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL---GTDRVIEVES 450 (983)
Q Consensus 376 ~NN~g~g~~~~~~~~~~~~~~~~~~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~---~~p~lIeV~~ 450 (983)
+||++|++++..+.. .+..++.++ .+++||.++|++||+++++|++.+||+++|+++++. ++|+||||.+
T Consensus 487 ~NN~~y~~~~~~~~~-----~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~p~lIev~~ 561 (588)
T PRK07525 487 FRNYQWGAEKKNQVD-----FYNNRFVGTELDNNVSYAGIAEAMGAEGVVVDTQEELGPALKRAIDAQNEGKTTVIEIMC 561 (588)
T ss_pred EeCchhHHHHHHHHH-----HhCCCcccccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCCCcEEEEEEe
Confidence 999999998753211 011112222 235899999999999999999999999999999864 5999999999
Q ss_pred Cccc
Q 041113 451 CIDA 454 (983)
Q Consensus 451 ~~~~ 454 (983)
++..
T Consensus 562 ~~~~ 565 (588)
T PRK07525 562 NQEL 565 (588)
T ss_pred cccc
Confidence 8654
|
|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-55 Score=518.87 Aligned_cols=405 Identities=14% Similarity=0.098 Sum_probs=303.4
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.+++|++.|+++| |||||+||.|.+...... ... ...+.. . .... +...+++..+++++
T Consensus 156 ~~~~~l~~A~~~A~~~~-gPV~l~iP~Dv~~~~~~~-~~~-----------~~~~~~-~-~~~~--~~~~~~~~~~~~a~ 218 (578)
T PLN02573 156 DAHELIDTAISTALKES-KPVYISVSCNLAAIPHPT-FSR-----------EPVPFF-L-TPRL--SNKMSLEAAVEAAA 218 (578)
T ss_pred HHHHHHHHHHHHHHhcC-CCEEEEeehhhhcCcccc-ccC-----------CCCCcc-c-ccCC--CChHHHHHHHHHHH
Confidence 36789999999999975 999999999964322110 000 000000 0 0000 01124567899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccch-hhhccCcccccc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHL-DHALLSESVKDW 158 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~-g~~~~~~~~~~~ 158 (983)
++|++||||+||+|+|++ .++.+++++|||++|+||+||++ | ||+||++||++ +|.+ |..+++..+..+
T Consensus 219 ~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~PV~tt~~-g------kg~~pe~hpl~--~G~~~G~~~~~~~~~~~ 289 (578)
T PLN02573 219 EFLNKAVKPVLVGGPKLRVAKACKAFVELADASGYPVAVMPS-A------KGLVPEHHPHF--IGTYWGAVSTPFCAEIV 289 (578)
T ss_pred HHHHhCCCCEEEEChhhcccchHHHHHHHHHHhCCCEEECcc-c------CCCCCCcCCCc--eEEeeCCCCCHHHHHHH
Confidence 999999999999999986 55678999999999999999997 7 89999999996 7887 666777777788
Q ss_pred CCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHH
Q 041113 159 IQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRAL 238 (983)
Q Consensus 159 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~ 238 (983)
++||+||++|+++++..+.+|....++.++||||.|+..+++++ ++.+. |++.++++|++.+.... ..|.. +...
T Consensus 290 ~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~--~~~~~-~~~~~l~~L~~~l~~~~-~~~~~-~~~~ 364 (578)
T PLN02573 290 ESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVTIGNGP--AFGCV-LMKDFLEALAKRVKKNT-TAYEN-YKRI 364 (578)
T ss_pred HhCCEEEEECCccCCcccccccccCCCCcEEEEeCCEEEECCcc--eECCc-CHHHHHHHHHHHhhccc-ccccc-cccc
Confidence 99999999999998766654433333457999999999998764 34444 89999999998774321 12321 1100
Q ss_pred HHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEee
Q 041113 239 DMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAG 318 (983)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 318 (983)
.. ............++++.++++.|++.++++++++.|+|+. +|...++++ .++..| ..++
T Consensus 365 ~~--~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iiv~D~G~~-----~~~~~~~~~-~~~~~~-----------~~~~ 425 (578)
T PLN02573 365 FV--PEGEPLKSEPGEPLRVNVLFKHIQKMLSGDTAVIAETGDS-----WFNCQKLKL-PEGCGY-----------EFQM 425 (578)
T ss_pred cc--CcccCCCCCCCCccCHHHHHHHHHHhcCCCCEEEEecccc-----hhhHHhccC-CCCCeE-----------Eeec
Confidence 00 0000000112346999999999999999999999999983 222222221 222222 2467
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
++|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|++| |++|+++||+||++|++++....
T Consensus 426 ~~gsmG~--glpaaiGa~lA~p~r~vv~i~GDG~f~m~~~EL~Ta~r--~~lpvv~vV~NN~~yg~~~~~~~-------- 493 (578)
T PLN02573 426 QYGSIGW--SVGATLGYAQAAPDKRVIACIGDGSFQVTAQDVSTMIR--CGQKSIIFLINNGGYTIEVEIHD-------- 493 (578)
T ss_pred chhhhhh--hhhHHHHHHHhCCCCceEEEEeccHHHhHHHHHHHHHH--cCCCCEEEEEeCCceeEEEeecc--------
Confidence 8999999 999999999999 9999999999999999999999999 99999999999999999875311
Q ss_pred cccccccCCCCCHHHHHHHcC-----CceeeeCCHHHHHHHHHhhhc--cCCCEEEEEEcCcccchHHHHHHHHHHHHH
Q 041113 398 LDQYFYTTHNISIQNLCLAHG-----LNHVQVKTKVELEEALSMSQH--LGTDRVIEVESCIDANATFHSMLRKFARQS 469 (983)
Q Consensus 398 ~~~~~~~~~~~df~~la~a~G-----~~~~~v~~~~eL~~aL~~a~~--~~~p~lIeV~~~~~~~~~~~~~~~~~~~~~ 469 (983)
..+...+++||.++|++|| +++.+|++.+||+++|+++++ .++|+||||.+++++....+..+..++++.
T Consensus 494 --~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~~~eL~~al~~a~~~~~~~p~lieV~v~~~~~~~~~~~~~~~~~~~ 570 (578)
T PLN02573 494 --GPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEKKDCLCFIEVIVHKDDTSKELLEWGSRVSAA 570 (578)
T ss_pred --cCccccCCCCHHHHHHHhcCcCCceeEEEecCHHHHHHHHHHHHhhCCCCcEEEEEEcCcCCCCHHHHHHHHHHhhc
Confidence 1123336799999999996 899999999999999999984 699999999999988877777777766553
|
|
| >TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-55 Score=517.73 Aligned_cols=391 Identities=15% Similarity=0.130 Sum_probs=302.3
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+++.+++|++.|.+++ |||||+||.|.+....... ..+.... ... +....+...++++++
T Consensus 141 ~~~~i~~a~~~A~~~~-gPv~l~iP~Dv~~~~~~~~---------------~~~~~~~---~~~-~~~~~~~~~i~~a~~ 200 (539)
T TIGR03393 141 ATAEIDRVITTALRER-RPGYLMLPVDVAAKAVTPP---------------VNPLVTH---KPA-HADSALRAFRDAAEN 200 (539)
T ss_pred hHHHHHHHHHHHHhcC-CCEEEEecccccCCccCCC---------------CcccCcC---CCC-CChHHHHHHHHHHHH
Confidence 5788999999999864 9999999999643322110 0000000 000 011112345899999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccC-ccccccC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLS-ESVKDWI 159 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~-~~~~~~~ 159 (983)
+|++||||+|++|+|++ .++.+++.+|||++++||++|++ | ||+||++||++ +|.++..++. .++..++
T Consensus 201 ~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~-g------kg~~~~~hpl~--lG~~~g~~~~~~~~~~~~ 271 (539)
T TIGR03393 201 KLAMAKRVSLLADFLALRHGLKHALQKWVKEVPMPHATLLM-G------KGILDEQQAGF--YGTYSGSASTGAVKEAIE 271 (539)
T ss_pred HHHhCCCCEEEeChhhcccChHHHHHHHHHHhCCCEEECcc-c------CccccCcCCCe--EEEEeCCCCCHHHHHHHh
Confidence 99999999999999986 55678999999999999999997 7 89999999996 7887544444 5667889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 239 (983)
+||+||++|+++++..+.+|...+.+.++||||.|+..+++++..++.+ +|++.+|++|++.+.. .|....
T Consensus 272 ~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~~~~~~~~~i-~D~~~~l~~l~~~l~~----~~~~~~---- 342 (539)
T TIGR03393 272 GADAVICVGVRFTDTITAGFTHQLTPEQTIDVQPHAARVGNVWFTGIPM-NDAIETLVELCEHAGL----MWSSSG---- 342 (539)
T ss_pred hCCEEEEECCcccccccceeeccCCcccEEEEcCCeEEECceEeCCcCH-HHHHHHHHHHhhhccc----cccccc----
Confidence 9999999999998766655533344556899999999998888888887 9999999999886532 232110
Q ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
.... ........++++..+++.|++.+|++++|+.|.|+ +. |..+++.+ ..+++|+ .+++
T Consensus 343 -~~~~--~~~~~~~~~l~~~~~~~~l~~~l~~~~iiv~d~G~----~~-~~~~~~~~-~~~~~~~-----------~~~~ 402 (539)
T TIGR03393 343 -AIPF--PQPDESRSALSQENFWQTLQTFLRPGDIILADQGT----SA-FGAADLRL-PADVNFI-----------VQPL 402 (539)
T ss_pred -ccCc--CCCCCCCCccCHHHHHHHHHHhcCCCCEEEEccCc----hh-hhhhhccC-CCCCeEE-----------echh
Confidence 0000 00001224699999999999999999999999998 33 44445443 3343333 3578
Q ss_pred CCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 320 RGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
+|+||| |+|+||||++|+ +++||||+|||||+|++|||+|++| |++|+++||+||++|++++.... .
T Consensus 403 ~g~mG~--glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~~--~~lpi~~vV~NN~~y~~i~~~~~--------~ 470 (539)
T TIGR03393 403 WGSIGY--TLPAAFGAQTACPNRRVILLIGDGSAQLTIQELGSMLR--DKQHPIILVLNNEGYTVERAIHG--------A 470 (539)
T ss_pred hhhhhh--HHHHHHHHHhcCCCCCeEEEEcCcHHHhHHHHHHHHHH--cCCCCEEEEEeCCceEEEEeecC--------C
Confidence 899999 999999999999 9999999999999999999999999 99999999999999999975321 1
Q ss_pred ccccccCCCCCHHHHHHHcCCc----eeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHHH
Q 041113 399 DQYFYTTHNISIQNLCLAHGLN----HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSML 462 (983)
Q Consensus 399 ~~~~~~~~~~df~~la~a~G~~----~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~~ 462 (983)
+..+....++||+++|++||++ +.+|++.+||+++|+++++.++|+||||.+++++.++.+.++
T Consensus 471 ~~~~~~~~~~df~~la~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~p~liev~i~~~~~p~~~~~~ 538 (539)
T TIGR03393 471 EQRYNDIALWNWTHLPQALSLDPQSECWRVSEAEQLADVLEKVAAHERLSLIEVVLPKADIPPLLGAL 538 (539)
T ss_pred CCCcCcCCCCCHHHHHHHcCCCCccceEEeccHHHHHHHHHHHhccCCeEEEEEEcCcccCCHHHHhc
Confidence 1112233569999999999995 899999999999999999999999999999999888877664
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria. |
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-54 Score=515.66 Aligned_cols=396 Identities=17% Similarity=0.155 Sum_probs=307.5
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++++||++.|+++|+|||||+||.|....+... ...... . . +...++++.+++++
T Consensus 141 ~~~~~~~~A~~~A~~~~~GPV~l~iP~dl~~~~~~~-----------------~~~~~~-~-~---~~~~~~~~~i~~~~ 198 (557)
T PRK08199 141 RIPELVSRAFHVATSGRPGPVVLALPEDVLSETAEV-----------------PDAPPY-R-R---VAAAPGAADLARLA 198 (557)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCHhHhhCcccc-----------------cccCCc-C-C---CCCCCCHHHHHHHH
Confidence 367899999999999999999999999853222100 000000 0 0 12235667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|.+||||+|++|+|+. .++.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..++...+..++
T Consensus 199 ~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~-~------kg~~~~~hp~~--~G~~g~~~~~~~~~~l~ 269 (557)
T PRK08199 199 ELLARAERPLVILGGSGWTEAAVADLRAFAERWGLPVACAFR-R------QDLFDNRHPNY--AGDLGLGINPALAARIR 269 (557)
T ss_pred HHHHhCCCCEEEECCCcCchhHHHHHHHHHHHhCCCEEEcCC-c------CCCCCCCChhh--ccCCcCcCCHHHHHHHH
Confidence 999999999999999986 45678999999999999999997 6 89999999996 67887666666667788
Q ss_pred CCCEEEEeCCccccHHHHHHHHhc---CCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEEC---FPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLR 236 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~---~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~ 236 (983)
+|||||++|+++++..+..|.... ++.++||||.|+..+++++..++.|++|++.+|++|.+.... ....|.+.+.
T Consensus 270 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~~~~-~~~~~~~~~~ 348 (557)
T PRK08199 270 EADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPDLAIVADPAAFAAALAALEPP-ASPAWAEWTA 348 (557)
T ss_pred hCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHhcccc-cchhHHHHHH
Confidence 999999999999766654332211 234799999999999999999999999999999999886432 2345765544
Q ss_pred HHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeE
Q 041113 237 ALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRV 316 (983)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 316 (983)
..+..+.... .......++++..+++.|++.+|++++++.|+|+ +..|..+++.. .+|++|+
T Consensus 349 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~ii~~d~g~----~~~~~~~~~~~-~~~~~~~------------ 410 (557)
T PRK08199 349 AAHADYLAWS-APLPGPGAVQLGEVMAWLRERLPADAIITNGAGN----YATWLHRFFRF-RRYRTQL------------ 410 (557)
T ss_pred HHHHHHHhhc-cccCCCCCcCHHHHHHHHHHhCCCCeEEEECChH----HHHHHHHhcCc-CCCCeEE------------
Confidence 4333222111 1112234799999999999999999999999998 55555444443 3333332
Q ss_pred eecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCc
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEP 395 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~ 395 (983)
..++|+||| |+|+|||+++++ +++||+|+|||||+|++|||+|+++ |++|+++||+||++|++++..+..
T Consensus 411 ~~~~g~mG~--glpaaiGa~la~p~~~vv~i~GDGsf~~~~~el~ta~~--~~l~i~~vv~nN~~~~~~~~~~~~----- 481 (557)
T PRK08199 411 APTSGSMGY--GLPAAIAAKLLFPERTVVAFAGDGCFLMNGQELATAVQ--YGLPIIVIVVNNGMYGTIRMHQER----- 481 (557)
T ss_pred CCCCccccc--hHHHHHHHHHhCCCCcEEEEEcchHhhccHHHHHHHHH--hCCCeEEEEEeCCcchHHHHHHHH-----
Confidence 245699999 999999999999 9999999999999999999999999 999999999999999998653110
Q ss_pred cccccccccC-CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 396 RILDQYFYTT-HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 396 ~~~~~~~~~~-~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
....++..+. .++||.++|++||+++.+|++.+||+++|+++++.++|+||||.+++++.
T Consensus 482 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~li~v~~~~~~~ 542 (557)
T PRK08199 482 EYPGRVSGTDLTNPDFAALARAYGGHGETVERTEDFAPAFERALASGKPALIEIRIDPEAI 542 (557)
T ss_pred hcCCccccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCHHHc
Confidence 1112222332 46899999999999999999999999999999989999999999997654
|
|
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-54 Score=510.96 Aligned_cols=385 Identities=16% Similarity=0.164 Sum_probs=296.6
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+++++++|++.|+++ +|||||+||.|++.... + .+...... . ........++++++
T Consensus 135 ~~~~i~~A~~~a~~~-~GPV~l~iP~Dv~~~~~-~-----------------~~~~~~~~-~----~~~~~~~~i~~~~~ 190 (549)
T PRK06457 135 AEYIIRRAIREAISK-RGVAHINLPVDILRKSS-E-----------------YKGSKNTE-V----GKVKYSIDFSRAKE 190 (549)
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEeCHhHhhccc-c-----------------cccccccC-C----CCCCCHHHHHHHHH
Confidence 678999999999996 59999999999632211 0 00000000 0 00111247889999
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQF 161 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~a 161 (983)
+|++||||+||+|+|++ ++.+++++|||++|+||++|++ | ||+||++||++ +|.+|..++..++..+++|
T Consensus 191 ~L~~AkrPvii~G~g~~-~a~~~l~~lAe~~~~PV~tt~~-g------kg~~~~~hp~~--~G~~g~~~~~~~~~~l~~a 260 (549)
T PRK06457 191 LIKESEKPVLLIGGGTR-GLGKEINRFAEKIGAPIIYTLN-G------KGILPDLDPKV--MGGIGLLGTKPSIEAMDKA 260 (549)
T ss_pred HHHcCCCcEEEECcchh-hHHHHHHHHHHHHCCCEEEccc-c------cccCCCCChhh--ccCCCCCCCHHHHHHHHhC
Confidence 99999999999999987 4568999999999999999986 7 89999999995 7888877777777788999
Q ss_pred CEEEEeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHHH
Q 041113 162 DVIIQIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240 (983)
Q Consensus 162 Dlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~~ 240 (983)
|+||++|+++.... | +. ..++||||.|+..+++++..++.|.+|++.+++.+... ....|.+.+.....
T Consensus 261 Dlvl~lG~~~~~~~---~---~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~~~~~----~~~~~~~~~~~~~~ 330 (549)
T PRK06457 261 DLLIMLGTSFPYVN---F---LNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAEFLNIDIEE----KSDKFYEELKGKKE 330 (549)
T ss_pred CEEEEECCCCChhh---c---CCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHhhc----ccchhHHHHHHHHH
Confidence 99999999985221 2 22 34799999999999999999999999999999654321 11234333332222
Q ss_pred HHHHHHHhh-hcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 241 MVASEISFQ-ICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 241 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
.|....... ...+.++++.+++++|++.+|++++++.|.|+ +.+|..+++.. ..|++|+ .+++
T Consensus 331 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~g~----~~~~~~~~~~~-~~~~~~~-----------~~~~ 394 (549)
T PRK06457 331 DWLDSISKQENSLDKPMKPQRVAYIVSQKCKKDAVIVTDTGN----VTMWTARHFRA-SGEQTFI-----------FSAW 394 (549)
T ss_pred HHHHHHHHhhcCCCCCcCHHHHHHHHHhhCCCCeEEEECCcH----HHHHHHHhCCC-CCCCeEE-----------eCCC
Confidence 232222111 11235799999999999999999999999998 56666655553 4444443 3578
Q ss_pred CCCCCccchHHHHHhhhhcc--CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 320 RGASGIDGLLSTAIGFAVGC--NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~--~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
+|+||| |+|+||||++|+ +++||+|+|||||+|++|||+|+++ |++|+++||+||++|++++..+.. ..
T Consensus 395 ~g~mG~--glpaaiGa~la~p~~~~Vv~i~GDGsf~~~~~eL~Ta~~--~~lpi~ivV~NN~~~g~i~~~q~~-----~~ 465 (549)
T PRK06457 395 LGSMGI--GVPGSVGASFAVENKRQVISFVGDGGFTMTMMELITAKK--YDLPVKIIIYNNSKLGMIKFEQEV-----MG 465 (549)
T ss_pred cchhhh--hHHHHHHHHhcCCCCCeEEEEEcccHHhhhHHHHHHHHH--HCCCeEEEEEECCccchHHHHHHH-----hc
Confidence 999999 999999999997 6999999999999999999999999 999999999999999999753210 00
Q ss_pred cccccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 398 LDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 398 ~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
+.....+.+++||+++|++||+++.+|++++||+++|+++++.++|+||||.+++++.
T Consensus 466 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~i~~~~~ 523 (549)
T PRK06457 466 YPEWGVDLYNPDFTKIAESIGFKGFRLEEPKEAEEIIEEFLNTKGPAVLDAIVDPNER 523 (549)
T ss_pred CCcccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 1111112246899999999999999999999999999999999999999999997664
|
|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-54 Score=513.90 Aligned_cols=398 Identities=16% Similarity=0.128 Sum_probs=299.1
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.|+|||+.|+++|||||||+||.|.+......... ..+........ ....++++.+++++
T Consensus 144 ~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~-------------~~~~~~~~~~~---~~~~~~~~~l~~~~ 207 (569)
T PRK09259 144 DIGIGVARAIRTAVSGRPGGVYLDLPAKVLAQTMDADEA-------------LTSLVKVVDPA---PAQLPAPEAVDRAL 207 (569)
T ss_pred HHHHHHHHHHHHhhhCCCCcEEEEeCHHHhhCccccccc-------------ccccccccCCC---CCCCCCHHHHHHHH
Confidence 368899999999999999999999999954322210000 00000000000 11235667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+|++ .++.+++.+|||++++||++|++ | ||+||++||++ +|.. .+..++
T Consensus 208 ~~L~~AkrPvIi~G~g~~~~~a~~~l~~lae~l~iPV~tt~~-g------kg~~~e~hpl~--~G~~-------~~~~l~ 271 (569)
T PRK09259 208 DLLKKAKRPLIILGKGAAYAQADEQIREFVEKTGIPFLPMSM-A------KGLLPDTHPQS--AAAA-------RSLALA 271 (569)
T ss_pred HHHHhCCCCEEEECcCccccChHHHHHHHHHHHCCCEEeccc-c------cccCCCCChhh--hhHH-------HHHHHh
Confidence 999999999999999987 45678999999999999999998 6 89999999996 5532 234578
Q ss_pred CCCEEEEeCCccccHHHHHHHHhc-CCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC---CCChhHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEEC-FPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP---HRSSKWCSFL 235 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~---~~~~~w~~~~ 235 (983)
+||+||+||+++++..+.++...+ +..++||||.|+..++.+++.++.+.+|++.+|++|.+.+.. .....|.+.+
T Consensus 272 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~w~~~~ 351 (569)
T PRK09259 272 NADVVLLVGARLNWLLSHGKGKTWGADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGLKQNTFKAPAEWLDAL 351 (569)
T ss_pred cCCEEEEeCCCCchhcccCchhccCCCCcEEEecCChHHhcCCccCceeEecCHHHHHHHHHHHhhhccccchHHHHHHH
Confidence 999999999999765543332233 335799999999999999999999999999999999987753 2345676665
Q ss_pred HHHHHHHHHHHHhhh-cccCCCCHHHHHHHHHhhcC--CCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCc
Q 041113 236 RALDMMVASEISFQI-CADYSLTEPHVAHELSRALT--SNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQ 312 (983)
Q Consensus 236 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~--~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 312 (983)
...+..+........ ....++++..+++.|++.++ ++.+++.+.+. +..|...++.+ ..|++|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~d~iv~~~~~~----~~~~~~~~~~~-~~p~~~~-------- 418 (569)
T PRK09259 352 AERKEKNAAKMAEKLSTDTQPMNFYNALGAIRDVLKENPDIYLVNEGAN----TLDLARNIIDM-YKPRHRL-------- 418 (569)
T ss_pred HHHHHhChhhhhhhhcCCCCCcCHHHHHHHHHHHhCCCCCEEEEeCchH----HHHHHHHhccc-CCCCceE--------
Confidence 544433222221111 12357999999999999995 47777777665 33454444443 4454443
Q ss_pred ceeEeecCCCCCccchHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCc--cccCCCCC
Q 041113 313 WIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGA--IFSLLPIA 390 (983)
Q Consensus 313 ~~~~~~~~G~mG~~g~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g--~~~~~~~~ 390 (983)
.++++|+||| |+|+|||+++|.+++||+|+|||||+|++|||+|++| |++|+++||+||++|. +.+....
T Consensus 419 ---~~~~~gsmG~--glpaaiGa~la~~~~vv~i~GDG~f~m~~~EL~Ta~r--~~lpi~~vV~NN~~~~~~~~~~~~~- 490 (569)
T PRK09259 419 ---DCGTWGVMGI--GMGYAIAAAVETGKPVVAIEGDSAFGFSGMEVETICR--YNLPVTVVIFNNGGIYRGDDVNLSG- 490 (569)
T ss_pred ---eCCCCccccc--cHHHHHHHHhcCCCcEEEEecCccccccHHHHHHHHH--cCCCEEEEEEeChhHHHHHHHHhhc-
Confidence 3577899999 9999999999988999999999999999999999999 9999999999999861 1110000
Q ss_pred CCCCcccccccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHH
Q 041113 391 DRTEPRILDQYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATF 458 (983)
Q Consensus 391 ~~~~~~~~~~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~ 458 (983)
......+ .+++||.++|++||+++.+|++.+||+++|+++++.++|+||||.+++++.++.
T Consensus 491 -------~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIev~id~~~~~~~ 553 (569)
T PRK09259 491 -------AGDPSPTVLVHHARYDKMMEAFGGVGYNVTTPDELRHALTEAIASGKPTLINVVIDPAAGTES 553 (569)
T ss_pred -------CCCccccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEECCCCCCCc
Confidence 0011111 247999999999999999999999999999999999999999999998776553
|
|
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-54 Score=511.92 Aligned_cols=390 Identities=18% Similarity=0.162 Sum_probs=298.9
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.|+||++.|+++|+|||||+||.|++..+.... .+...... ....++++.+++++
T Consensus 137 ~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~----------------~~~~~~~~-----~~~~~~~~~i~~~~ 195 (535)
T PRK07524 137 DLPEVLARAFAVFDSARPRPVHIEIPLDVLAAPADHL----------------LPAPPTRP-----ARPGPAPAALAQAA 195 (535)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCHhHHhcccccc----------------cCcccccC-----CCCCCCHHHHHHHH
Confidence 3678999999999999999999999999643332110 00000000 11235677899999
Q ss_pred HHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 81 ELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
++|++||||+|++|+|++ ++.+++.+|||++++||++|++ | ||.||++||++ +|..+ ++..++..+++
T Consensus 196 ~~L~~AkrPvil~G~g~~-~a~~~l~~lae~l~~pV~tt~~-~------kg~~p~~hp~~--~G~~~--~~~~~~~~~~~ 263 (535)
T PRK07524 196 ERLAAARRPLILAGGGAL-AAAAALRALAERLDAPVALTIN-A------KGLLPAGHPLL--LGASQ--SLPAVRALIAE 263 (535)
T ss_pred HHHHhCCCcEEEECCChH-HHHHHHHHHHHHHCCCEEEccc-c------cccCCCCChhh--ccCCC--CCHHHHHHHHh
Confidence 999999999999999987 4678999999999999999997 6 89999999996 56554 34456667889
Q ss_pred CCEEEEeCCccccHHHHH-HHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCC-ChhHHHH-HH
Q 041113 161 FDVIIQIGSRITSKRISQ-MIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHR-SSKWCSF-LR 236 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~-~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~-~~~w~~~-~~ 236 (983)
|||||++|+++.+..+.. |...+. +.++||||.|+.+++++++.++.|.+|++.+|++|.+.+.... ...|... ++
T Consensus 264 aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~ 343 (535)
T PRK07524 264 ADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLARNYPPALALVGDARAALEALLARLPGQAAAADWGAARVA 343 (535)
T ss_pred CCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhCCCcCCCceEecCHHHHHHHHHHhccccCCchhhHHHHHH
Confidence 999999999986544321 112233 3469999999999999999999999999999999999875432 2345422 21
Q ss_pred HHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeE
Q 041113 237 ALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRV 316 (983)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 316 (983)
..+.. ..... .+...++..+++.|++.+| +.+++.|.|. +.+|..++++. ++|++|+. .
T Consensus 344 ~~~~~----~~~~~-~~~~~~~~~~~~~l~~~l~-~~~i~~d~g~----~~~~~~~~~~~-~~p~~~~~----------~ 402 (535)
T PRK07524 344 ALRQA----LRAEW-DPLTAAQVALLDTILAALP-DAIFVGDSTQ----PVYAGNLYFDA-DAPRRWFN----------A 402 (535)
T ss_pred HHHHh----chhhc-cccccCHHHHHHHHHHhCC-CCEEEeCCcH----HHHHHHHhccc-CCCCceEe----------C
Confidence 21111 11111 1234667889999999998 6888889888 55565555553 45554442 1
Q ss_pred eecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCc
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEP 395 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~ 395 (983)
++++|+||| ++|+|||+++|+ +++||+++|||||+|++|||+|+++ |++|+++||+||++|++++..+...
T Consensus 403 ~~~~g~mG~--~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~ta~~--~~lpi~~vV~NN~~~g~i~~~~~~~---- 474 (535)
T PRK07524 403 STGYGTLGY--GLPAAIGAALGAPERPVVCLVGDGGLQFTLPELASAVE--ADLPLIVLLWNNDGYGEIRRYMVAR---- 474 (535)
T ss_pred CCCcccccc--hHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHH--hCCCeEEEEEECCchHHHHHHHHHh----
Confidence 578899999 999999999999 9999999999999999999999999 9999999999999999987532110
Q ss_pred cccccccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcc
Q 041113 396 RILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCID 453 (983)
Q Consensus 396 ~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~ 453 (983)
.......+.+++||.++|++||+++.+|++.+||+++|+++++.++|+||||.+++-
T Consensus 475 -~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~~~~~ 531 (535)
T PRK07524 475 -DIEPVGVDPYTPDFIALARAFGCAAERVADLEQLQAALRAAFARPGPTLIEVDQACW 531 (535)
T ss_pred -cCCccccCCCCCCHHHHHHHCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEEECCcc
Confidence 011111223579999999999999999999999999999999999999999999864
|
|
| >cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-53 Score=474.27 Aligned_cols=338 Identities=17% Similarity=0.175 Sum_probs=265.5
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCcc
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKI 573 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~~ 573 (983)
||++|+++.+. ++.++|||+|++|++||||+.+.. .. ..+...++.+.|.|+|+++
T Consensus 1 ~I~~i~~~~~~--------------------~~~~~V~i~~~~G~~G~GE~~~~~-~~---~~~~~~~~~l~p~l~G~d~ 56 (352)
T cd03325 1 KITKIETFVVP--------------------PRWLFVKIETDEGVVGWGEPTVEG-KA---RTVEAAVQELEDYLIGKDP 56 (352)
T ss_pred CeEEEEEEEEC--------------------CCEEEEEEEECCCCEEEeccccCC-cc---hHHHHHHHHHHHHhCCCCH
Confidence 68888876541 235799999999999999997532 11 2234455679999999999
Q ss_pred cccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCC
Q 041113 574 SYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSN 653 (983)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~ 653 (983)
.+++.++..+. ............++++|||||||||+||.+|+|||+||||.. +.+|++|+++. .
T Consensus 57 ~~~~~~~~~~~-----~~~~~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LLGg~~---------~~~i~~~~~~~-~ 121 (352)
T cd03325 57 MNIEHHWQVMY-----RGGFYRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLGGQV---------RDRVRVYSWIG-G 121 (352)
T ss_pred HHHHHHHHHHH-----HhcCcCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCc---------cceeEEEEeCC-C
Confidence 87665553221 110011122246799999999999999999999999999975 47899998764 4
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccCC-------CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhccc
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVARR-------ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD 726 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~~-------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~ 726 (983)
.+++++.+++++++++||++||+|+|.. .++++|+++|+++|+++|+++.||||+|++||+++|+++++.|++
T Consensus 122 ~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~ 201 (352)
T cd03325 122 DRPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHGRVSKPMAKDLAKELEP 201 (352)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 5788899999999999999999999841 146789999999999999999999999999999999999999999
Q ss_pred CCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHH
Q 041113 727 CDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQR 803 (983)
Q Consensus 727 ~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~ 803 (983)
+++.|||||++ +++++++|++++++||++||++++..+ +..+++. .+|++|+|++++||++++++++++|++
T Consensus 202 ~~i~~iEeP~~~~d~~~~~~L~~~~~~pia~dEs~~~~~~-----~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~ 276 (352)
T cd03325 202 YRLLFIEEPVLPENVEALAEIAARTTIPIATGERLFSRWD-----FKELLEDGAVDIIQPDISHAGGITELKKIAAMAEA 276 (352)
T ss_pred cCCcEEECCCCccCHHHHHHHHHhCCCCEEecccccCHHH-----HHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHH
Confidence 99999999998 788999999999999999999998764 5555544 579999999999999999999999999
Q ss_pred cCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCee
Q 041113 804 HGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFV 879 (983)
Q Consensus 804 ~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGl 879 (983)
+|++++.|+ +++++++++++|+++++++.. . .++.+... . .....++...+..+|+.+++ +|++|||
T Consensus 277 ~gi~~~~h~-~~s~i~~~a~~hlaa~~~~~~--~---~e~~l~~~--~-~~~~~~~~~~~~~~~~~~~~G~l~vp~~pGL 347 (352)
T cd03325 277 YDVALAPHC-PLGPIALAASLHVDASTPNFL--I---QEQSLGIH--Y-NEGDDLLDYLVDPEVFDMENGYVKLPTGPGL 347 (352)
T ss_pred cCCcEeccC-CCChHHHHHHHHHHHhcccHH--h---hhcccccC--c-ccchhhhhhhccCCCCeeeCCEEECCCCCcc
Confidence 999987554 699999999999999988642 1 01100000 0 00112232223336787773 9999999
Q ss_pred eEEec
Q 041113 880 EASVA 884 (983)
Q Consensus 880 Gv~~d 884 (983)
|+++|
T Consensus 348 Gi~~d 352 (352)
T cd03325 348 GIEID 352 (352)
T ss_pred CeeeC
Confidence 99986
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-54 Score=514.35 Aligned_cols=386 Identities=18% Similarity=0.204 Sum_probs=298.9
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
++++|+||++.|.++++|||||+||.|++....... ..... . . . +...++++.++++++
T Consensus 140 ~~~~i~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~---------------~~~~~-~-~-~---~~~~~~~~~i~~~~~ 198 (544)
T PRK07064 140 ALATIREAVRVALTAPTGPVSVEIPIDIQAAEIELP---------------DDLAP-V-H-V---AVPEPDAAAVAELAE 198 (544)
T ss_pred HHHHHHHHHHHhccCCCCcEEEEeCHhHhhcccccc---------------ccccc-c-c-C---CCCCCCHHHHHHHHH
Confidence 678999999999999999999999999643322100 00000 0 0 0 122356678999999
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQF 161 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~a 161 (983)
+|.+||||+|++|+|++ .+.+++.+||| +|+||++|++ | ||+||++||++ +|.++ ++..++..+++|
T Consensus 199 ~l~~AkrPvi~~G~g~~-~a~~~l~~lae-~~~pv~~t~~-~------kg~~~~~hp~~--~G~~~--~~~~~~~~~~~a 265 (544)
T PRK07064 199 RLAAARRPLLWLGGGAR-HAGAEVKRLVD-LGFGVVTSTQ-G------RGVVPEDHPAS--LGAFN--NSAAVEALYKTC 265 (544)
T ss_pred HHHhCCCCEEEECCChH-hHHHHHHHHHH-cCCCEEEccC-c------cccCCCCChhh--cccCC--CCHHHHHHHHhC
Confidence 99999999999999986 45678999999 9999999997 6 89999999995 67776 445555677899
Q ss_pred CEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC--CChhHHHHHHHHH
Q 041113 162 DVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH--RSSKWCSFLRALD 239 (983)
Q Consensus 162 Dlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~--~~~~w~~~~~~~~ 239 (983)
||||+||+++++..+..|.. ..+.++||||.|+..++++++.++.+.+|++.+|++|.+.+... ....|.+.+...+
T Consensus 266 Dlvl~iG~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~ 344 (544)
T PRK07064 266 DLLLVVGSRLRGNETLKYSL-ALPRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLEGRLSVDPAFAADLRAAR 344 (544)
T ss_pred CEEEEecCCCCccccccccc-CCCCceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHhhhhccccchHHHHHHHHHH
Confidence 99999999998777655532 22457999999999999999999999999999999998876432 2345766554443
Q ss_pred HHHHHHHHhhhcccCCCCH-HHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEee
Q 041113 240 MMVASEISFQICADYSLTE-PHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAG 318 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 318 (983)
..+... . ...+.+ ..+++.|++.+|++++++.|.|.. ...|..+++++ ..|+++ + ++
T Consensus 345 ~~~~~~----~--~~~~~~~~~~~~~l~~~l~~~~ii~~d~~~~---~~~~~~~~~~~-~~p~~~----------~--~~ 402 (544)
T PRK07064 345 EAAVAD----L--RKGLGPYAKLVDALRAALPRDGNWVRDVTIS---NSTWGNRLLPI-FEPRAN----------V--HA 402 (544)
T ss_pred Hhhhhh----c--ccccCcHHHHHHHHHHhCCCCCEEEeCCccc---hHHHHHHhcCc-cCCCce----------e--cc
Confidence 322111 1 123554 469999999999999999998741 24454444443 333332 2 24
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
+.|+||| ++|+|||+++|+ +++||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+.... .
T Consensus 403 ~~g~mG~--~lpaAiGa~lA~p~~~vv~i~GDGsf~m~~~eL~Ta~~--~~lpv~ivV~NN~~yg~~~~~~~~~~----~ 474 (544)
T PRK07064 403 LGGGIGQ--GLAMAIGAALAGPGRKTVGLVGDGGLMLNLGELATAVQ--ENANMVIVLMNDGGYGVIRNIQDAQY----G 474 (544)
T ss_pred CCCcccc--ccchhhhhhhhCcCCcEEEEEcchHhhhhHHHHHHHHH--hCCCeEEEEEeCChhHHHHHHHHHhc----C
Confidence 4499999 999999999999 9999999999999999999999999 99999999999999999976432110 0
Q ss_pred cccccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCc
Q 041113 398 LDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCI 452 (983)
Q Consensus 398 ~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~ 452 (983)
....+.+.+++||+++|++||+++.+|++++||+++|+++++.++|+||||.++.
T Consensus 475 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV~~~~ 529 (544)
T PRK07064 475 GRRYYVELHTPDFALLAASLGLPHWRVTSADDFEAVLREALAKEGPVLVEVDMLS 529 (544)
T ss_pred CccccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEEEEccc
Confidence 1112223357999999999999999999999999999999999999999999974
|
|
| >cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-53 Score=473.31 Aligned_cols=357 Identities=15% Similarity=0.137 Sum_probs=270.8
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECC---C--CEEEEeecCcCcCcccHHHHHHHHHHHHhHh
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLED---G--SVGYGEVAPLEIHKENLLDAEEQLRFLLHFM 568 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~---G--~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l 568 (983)
||.+ ++.+++|+++||.++.+++ ..++.++|+|+||+ | ++||||+.. + +.... ....+.++|.|
T Consensus 1 ~~~~--~~~~~~Pl~~p~~~a~~~~----~~~~~~lV~v~td~~~~G~~~~G~Ge~~~-~---~~~~~-~~i~~~~~p~L 69 (385)
T cd03326 1 RIVA--IREKAIPLSSPIANAYVDF----SGLTTSLVAVVTDVVRDGRPVVGYGFDSI-G---RYAQG-GLLRERFIPRL 69 (385)
T ss_pred Ccee--eEEEecCCCCCccCceeee----eccEEEEEEEEeccccCCCceeEEEeccC-C---chhHH-HHHHHHHHHHh
Confidence 3544 4588899999999998765 34888999999999 9 999999862 1 11111 11224588999
Q ss_pred ccCccccc-ccccccCchhhhhhhcC----CCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccce
Q 041113 569 TGAKISYF-LPLLKGSFSSWIWSTLG----IPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTS 643 (983)
Q Consensus 569 ~g~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~ 643 (983)
+|+++.++ +.+......+.+|+.+. ....+....|++|||||||||+||.+|+|||+||||..+ .-..+++
T Consensus 70 iG~dp~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~~----~~~~~~~ 145 (385)
T cd03326 70 LAAAPDSLLDDAGGNLDPARAWAAMMRNEKPGGHGERAVAVGALDMAVWDAVAKIAGLPLYRLLARRYG----RGQADPR 145 (385)
T ss_pred cCCChHHhhhcccccCCHHHHHHHHHhcCccCCCCHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCccc----CCCCCCe
Confidence 99999855 22222112222222221 112223457999999999999999999999999998630 0001368
Q ss_pred eEEEEeec---CCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 041113 644 IKICALID---SNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720 (983)
Q Consensus 644 i~~~~~~~---~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~ 720 (983)
|++|++.. ...+++++.+++++++++||++||+|+|. .++++|+++|+++|+++|+++.||+|+|++||.++|+++
T Consensus 146 v~~y~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~-~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~ 224 (385)
T cd03326 146 VPVYAAGGYYYPGDDLGRLRDEMRRYLDRGYTVVKIKIGG-APLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAY 224 (385)
T ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEeCCC-CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHH
Confidence 99998642 13468889999999999999999999986 368899999999999999999999999999999999999
Q ss_pred HhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-c----eEEEEcCCCcCCHHH
Q 041113 721 GFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-I----VAIVIKPSVIGGFEN 793 (983)
Q Consensus 721 ~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~----~~i~~k~~~~GGl~~ 793 (983)
++.|+++++.|||||++ |++++++|++++++||++||+++++.+ +..+++.+ + |++|+|++++||+|+
T Consensus 225 ~~~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~iPIa~gEs~~~~~~-----~~~li~~~a~~~~~div~~d~~~~GGit~ 299 (385)
T cd03326 225 AKALAPYGLRWYEEPGDPLDYALQAELADHYDGPIATGENLFSLQD-----ARNLLRYGGMRPDRDVLQFDPGLSYGLPE 299 (385)
T ss_pred HHHhhCcCCCEEECCCCccCHHHHHHHHhhCCCCEEcCCCcCCHHH-----HHHHHHhCCccccCCEEEeCchhhCCHHH
Confidence 99999999999999998 789999999999999999999999864 66666544 3 999999999999999
Q ss_pred HHHHHHHHHHcCCcE--EeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceee
Q 041113 794 AGLIARWAQRHGKMA--VVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISIC 871 (983)
Q Consensus 794 ~~~~~~~A~~~gi~~--~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~ 871 (983)
+++++++|+++|+++ +.+|. +..+++|+++++++. .. +. + +. ++.. .+.+.+++.++
T Consensus 300 ~~kia~lA~a~gi~~~~~~pH~-----~~~a~lhl~aa~~~~--~~----e~-~-~~----~~~~----~~~~~~~~~~~ 358 (385)
T cd03326 300 YLRMLDVLEAHGWSRRRFFPHG-----GHLMSLHIAAGLGLG--GN----ES-Y-PD----VFQP----FGGFADGCKVE 358 (385)
T ss_pred HHHHHHHHHHcCCCCceeecch-----HHHHHHHHHhcCCCc--ee----EE-e-cc----ccch----hhhcCCCCcee
Confidence 999999999999982 44553 456889999987741 11 00 0 00 0010 12223455555
Q ss_pred ----ccCCCCeeeEEecchhhhhhhcc
Q 041113 872 ----HNSCRGFVEASVAKATHILQNLQ 894 (983)
Q Consensus 872 ----~~P~~pGlGv~~d~a~~~~~~~~ 894 (983)
.+|++||||+++| ++.+++++
T Consensus 359 ~G~i~~p~~PGlGield--~~~~~~~~ 383 (385)
T cd03326 359 NGYVRLPDAPGIGFEGK--AELAAEMR 383 (385)
T ss_pred CCEEECCCCCCCCcccC--HHHHHHHh
Confidence 3999999999999 87777654
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-53 Score=510.62 Aligned_cols=405 Identities=17% Similarity=0.130 Sum_probs=304.9
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccc-cccccccccccccchhhHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTK-YIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++.+++|++.|+++++|||||+||.|.+..+.... ..+... ...... ....+++..+++++
T Consensus 145 ~~~~i~~A~~~A~~~~~GPv~l~iP~Dv~~~~~~~~---------------~~~~~~~~~~~~~--~~~~~~~~~i~~~~ 207 (578)
T PRK06112 145 IDDYVDQAFTAATSGRPGPVVLLLPADLLTAAAAAP---------------AAPRSNSLGHFPL--DRTVPAPQRLAEAA 207 (578)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEcCHhHhhCccccc---------------cCcccccccCCCC--CCCCCCHHHHHHHH
Confidence 678899999999999999999999999543222100 000000 000000 01235667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccC-----cc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLS-----ES 154 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~-----~~ 154 (983)
++|++||||+||+|+|+. +++.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..+.. .+
T Consensus 208 ~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~~t~~-~------kg~~p~~hp~~--~G~~g~~~~~~~~~~~~ 278 (578)
T PRK06112 208 SLLAQAQRPVVVAGGGVHISGASAALAALQSLAGLPVATTNM-G------KGAVDETHPLS--LGVVGSLMGPRSPGRHL 278 (578)
T ss_pred HHHHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEEEccc-c------cccCCCCCccc--cccccccCCCccchHHH
Confidence 999999999999999876 45678999999999999999997 6 89999999996 6777654322 34
Q ss_pred ccccCCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-------C
Q 041113 155 VKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-------R 227 (983)
Q Consensus 155 ~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-------~ 227 (983)
...+++||+||+||+++++..+.+|....+..++||||.|+.++++++. ++.|.+|++.+|++|++.+... .
T Consensus 279 ~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~-~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~ 357 (578)
T PRK06112 279 RDLVREADVVLLVGTRTNQNGTDSWSLYPEQAQYIHIDVDGEEVGRNYE-ALRLVGDARLTLAALTDALRGRDLAARAGR 357 (578)
T ss_pred HHHHHhCCEEEEECCCCCccccccccccCCCCeEEEEECChHHhCcccc-ceEEEeCHHHHHHHHHHhhhhccccccccc
Confidence 5567899999999999987776555332233579999999999988776 6899999999999998866421 1
Q ss_pred ChhHHHHHHHHHHHHHHHHHh-hhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCccccccccccccc
Q 041113 228 SSKWCSFLRALDMMVASEISF-QICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLN 306 (983)
Q Consensus 228 ~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~ 306 (983)
...|...+......+...... ......++++.++++.|++.+|++++++.|+|+ +.+|...++.. ..|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~l~~~~ivv~d~g~----~~~~~~~~~~~-~~~------ 426 (578)
T PRK06112 358 RAALEPAIAAGREAHREDSAPVALSDASPIRPERIMAELQAVLTGDTIVVADASY----SSIWVANFLTA-RRA------ 426 (578)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhcCCCCCcCHHHHHHHHHHhCCCCCEEEEcccH----HHHHHHHhcCc-cCC------
Confidence 234544333222221111111 112235799999999999999999999999998 55666554442 222
Q ss_pred CCCCCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCcccc
Q 041113 307 SEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFS 385 (983)
Q Consensus 307 ~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~ 385 (983)
+..+..+.++|+||+ ++|+|||+++|+ +++|||++|||||+|++|||+|+++ |++|+++||+||++|++++
T Consensus 427 ----~~~~~~~~g~gsmG~--~l~~aiGa~la~~~~~vv~i~GDGsf~~~~~el~ta~~--~~l~~~~vv~NN~~~g~~~ 498 (578)
T PRK06112 427 ----GMRFLTPRGLAGLGW--GVPMAIGAKVARPGAPVICLVGDGGFAHVWAELETARR--MGVPVTIVVLNNGILGFQK 498 (578)
T ss_pred ----CceEECCCCcccccc--HHHHHHHHHhhCCCCcEEEEEcchHHHhHHHHHHHHHH--hCCCeEEEEEeCCccCCEE
Confidence 222223578899999 999999999999 8999999999999999999999999 9999999999999999876
Q ss_pred CCCCCCCCCcccccc-ccc-cCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHH
Q 041113 386 LLPIADRTEPRILDQ-YFY-TTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATF 458 (983)
Q Consensus 386 ~~~~~~~~~~~~~~~-~~~-~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~ 458 (983)
+.+.. .+.. ... ...++||.++|++||+++++|++.+||+++|+++++.++|+||||.+++++.++.
T Consensus 499 ~~~~~------~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIev~~~~~~~p~~ 567 (578)
T PRK06112 499 HAETV------KFGTHTDACHFAAVDHAAIARACGCDGVRVEDPAELAQALAAAMAAPGPTLIEVITDPSAFPPI 567 (578)
T ss_pred ecccc------ccCCccccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEcCcccCCCc
Confidence 43211 1111 111 1246999999999999999999999999999999999999999999998876653
|
|
| >KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-53 Score=453.05 Aligned_cols=405 Identities=20% Similarity=0.162 Sum_probs=305.0
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+|+..+++|++.|++|+|||||+++|.|..+.....+.+ .+ -..+.+..+. + +.+.|++..|++++
T Consensus 146 ~I~~~i~kA~r~a~~G~PG~~yvD~P~d~v~~~~~~e~~------~~----~~~p~~~~p~-P---~i~~p~~s~i~~av 211 (571)
T KOG1185|consen 146 DIPPTIRKAVRAAMSGRPGPVYVDLPADVVLPSKMVEKE------ID----VSEPQPPIPL-P---PIPGPPPSQIQKAV 211 (571)
T ss_pred hccHHHHHHHHHHhcCCCCceEEecccceeeeecccccc------cc----cCCCCCCCCC-C---CCCCCCHHHHHHHH
Confidence 478899999999999999999999999943322111000 00 0011111111 1 24567888999999
Q ss_pred HHHhcCCceEEEEccCCCh-hHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHNE-DEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~~-~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+||+|.|+.. .+.++|++|.|++|+|++.|+| | ||++|++||+++ +.+...+++
T Consensus 212 ~llk~AKrPLlvvGkgAa~~~ae~~l~~~Ve~~glPflptpM-g------KGll~d~hPl~v---------~~aRS~ALk 275 (571)
T KOG1185|consen 212 QLLKSAKRPLLVVGKGAAYAPAEDQLRKFVETTGLPFLPTPM-G------KGLLPDNHPLNV---------SSARSLALK 275 (571)
T ss_pred HHHHhcCCcEEEEecccccCccHHHHHHHHHhcCCCcccCcc-c------ccCCCCCCchhh---------hHHHHHHHh
Confidence 9999999999999999864 4567999999999999999999 7 899999999962 234456789
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCCCC-CCeeEEEEcCHHHHHHHHHhccCCC-----CChhHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPS-HSVTHRIQSTIVQFVDFLLKVQVPH-----RSSKWC 232 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~-~~~~~~i~~d~~~~l~~L~~~~~~~-----~~~~w~ 232 (983)
.||+||++|+|++..-..+..+.+.+ .++||||+++++++.+ ..+++.|.+|++.++.+|.+.+... ..++|.
T Consensus 276 ~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~L~e~l~~~~~~~~~s~~w~ 355 (571)
T KOG1185|consen 276 KADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDINPEELGNNFVKPDVAIQGDIGLFVLQLVEELQDQPWTWGPSTDWV 355 (571)
T ss_pred hCCEEEEecceeeEEEecCCCCccCCCceEEEEeCCHHHHhcccCCCCceeeecHHHHHHHHHHHhcCCCcccCCchhHH
Confidence 99999999999974333333233433 3799999999999888 7899999999999999999988652 234899
Q ss_pred HHHHHHHHHHHHHHHhh-hcccCCCCHHHHHHHHHhhcC-CCceEEEecCcchhhhhhhcCCCcccccccccccccCCCC
Q 041113 233 SFLRALDMMVASEISFQ-ICADYSLTEPHVAHELSRALT-SNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFP 310 (983)
Q Consensus 233 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~-~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 310 (983)
+.+++..++.+....+. .....++++.++++.|++.|| ++.|+|.+.++.+.... ..+. .+.|+
T Consensus 356 k~Lrek~~~ne~~~~~~~~~~~~pLN~~~~~~~vre~L~~~d~ilVsEGantmdigr----~~l~-~~~Pr--------- 421 (571)
T KOG1185|consen 356 KELREKDKQNEAAVEEKAAKKSTPLNYYQVLQTVRELLPNDDTILVSEGANTMDIGR----TLLP-PRGPR--------- 421 (571)
T ss_pred HHHHHHHHhhHHHHHHHhhccCCCCcHHHHHHHHHHhcCCCCcEEEecCCcchhhhh----hhcc-CCCcc---------
Confidence 99888777665544432 233567999999999999999 77788887777322111 1111 13444
Q ss_pred CcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCC-CccccCCC
Q 041113 311 HQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHG-GAIFSLLP 388 (983)
Q Consensus 311 ~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g-~g~~~~~~ 388 (983)
+++. .+.||+||. |+++|||||++. +++|+|+.||++|.|+.+|++|++| ||+|+++||+||+| ||.-..-.
T Consensus 422 -~rLD-aGtfgTMGV--G~Gfalaaa~~~P~~~V~~veGDsaFGfSaME~ET~vR--~~Lpvv~vV~NN~Giyg~d~~~~ 495 (571)
T KOG1185|consen 422 -RRLD-AGTFGTMGV--GLGFALAAALAAPDRKVVCVEGDSAFGFSAMELETFVR--YKLPVVIVVGNNNGIYGLDDDGW 495 (571)
T ss_pred -cccC-Ccccccccc--chhHHHHHHhhCCCCeEEEEecCcccCcchhhHHHHHH--hcCCeEEEEecCCcccccCcccH
Confidence 4443 688999999 999999999999 9999999999999999999999999 99999999997765 55432210
Q ss_pred CCC-CCCccccc-cccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-CCCEEEEEEcCcccch
Q 041113 389 IAD-RTEPRILD-QYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-GTDRVIEVESCIDANA 456 (983)
Q Consensus 389 ~~~-~~~~~~~~-~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-~~p~lIeV~~~~~~~~ 456 (983)
... .+. ...+ .......+.+|.+++++||.+++.|++++||..+++++++. ++|+||+|.|++.+..
T Consensus 496 ~~I~e~~-~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~t~~el~~~l~~a~q~~~~psvINVlI~p~~~r 565 (571)
T KOG1185|consen 496 KQISEQD-PTLDLPPTALLANTRYDKVAKAFGGKGYFVSTVEELLAALQQACQDTDKPSVINVLIGPTAFR 565 (571)
T ss_pred HHHhhcC-cccCCCcccccccccHHHHHHHcCCCceeeCCHHHHHHHHHHHHhcCCCCeEEEEEecccccc
Confidence 000 000 0000 00111247899999999999999999999999999999875 4999999999987643
|
|
| >cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=472.70 Aligned_cols=365 Identities=17% Similarity=0.143 Sum_probs=269.5
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECC-CCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccC
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLED-GSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGA 571 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~-G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~ 571 (983)
+||++|+++.+++|++.|+..+.... .....+.++|||+||+ |++||||+.+..... ..+...++.++|.++|+
T Consensus 1 ~kI~~i~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~V~i~td~~G~~G~Ge~~~~~~~~---~~~~~~~~~lap~liG~ 75 (415)
T cd03324 1 IKITALEVRDVRFPTSLELDGSDAMN--PDPDYSAAYVVLRTDAAGLKGHGLTFTIGRGN---EIVCAAIEALAHLVVGR 75 (415)
T ss_pred CeEEEEEEEEEEeecCccCCCccccc--CCCCceEEEEEEEecCCCCEEEEEeccCCCch---HHHHHHHHHHHHHhCCC
Confidence 48999999999999999985543321 0122578999999999 999999986432122 22333456789999999
Q ss_pred cccccccccccCchhhhhhh---cCCC-CCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccc-------ccc---
Q 041113 572 KISYFLPLLKGSFSSWIWST---LGIP-ACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEID-------EEI--- 637 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~-------~~~--- 637 (983)
++.+++..+.... ..+... .... ..+....|++|||+|||||+||.+|+|||+||||..+.+ .+.
T Consensus 76 d~~~i~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLGg~~~~~~~~~~~~~~~~~~ 154 (415)
T cd03324 76 DLESIVADMGKFW-RRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLVDMTPEELVSCIDFRYITDA 154 (415)
T ss_pred CHHHHHHHHHHHH-HHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCHHHhhhcccceeeccc
Confidence 9987644332111 111100 0000 122335799999999999999999999999999953100 000
Q ss_pred ----------------c------cccceeEEEEee--cCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHH
Q 041113 638 ----------------S------KRSTSIKICALI--DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQE 693 (983)
Q Consensus 638 ----------------~------~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~ 693 (983)
. -.++++|+|++. +...+++++.+++++++++||++||+|+|. ++++|+++|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~--~~~~d~~~v~a 232 (415)
T cd03324 155 LTPEEALEILRRGQPGKAAREADLLAEGYPAYTTSAGWLGYSDEKLRRLCKEALAQGFTHFKLKVGA--DLEDDIRRCRL 232 (415)
T ss_pred cCHHHHHHHhhhcccchhhhhhhhhccCCceeecCCcccCCCHHHHHHHHHHHHHcCCCEEEEeCCC--CHHHHHHHHHH
Confidence 0 001578998642 123578899999999999999999999986 78999999999
Q ss_pred HHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhc---CCcEEeCCCccCcCCChHH
Q 041113 694 VRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEES---GLPVALDETIDKFQKDPLN 768 (983)
Q Consensus 694 vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~---~ipIa~dEs~~~~~~~~~~ 768 (983)
+|+++|+++.||+|+|++|++++|+++++.|+++++.|||||++ +++++++|++++ ++||++||++++.++
T Consensus 233 vRe~vG~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~iEEP~~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~---- 308 (415)
T cd03324 233 AREVIGPDNKLMIDANQRWDVPEAIEWVKQLAEFKPWWIEEPTSPDDILGHAAIRKALAPLPIGVATGEHCQNRVV---- 308 (415)
T ss_pred HHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhccCCCEEECCCCCCcHHHHHHHHHhcccCCCceecCCccCCHHH----
Confidence 99999999999999999999999999999999999999999998 788999999988 699999999999764
Q ss_pred HHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCC
Q 041113 769 MLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCP 847 (983)
Q Consensus 769 ~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~ 847 (983)
+..+++. .+|++|+|++++||++++++++++|+++|++++.| . ++++.++++|+++++.++.... ..+
T Consensus 309 -~~~ll~~~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~~pH-~--s~~~~~a~~~~~~~~~~~~~~~-------~~~ 377 (415)
T cd03324 309 -FKQLLQAGAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPVCPH-A--GGVGLCELVQHLSMIDYICVSG-------SKE 377 (415)
T ss_pred -HHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEc-C--CHHHHHHHHHHhhcccccccCC-------ccc
Confidence 6666654 47999999999999999999999999999997654 3 6888888777665432110000 000
Q ss_pred CCccCccchhcccccCCCCCceeec----cCCCCeeeEEe
Q 041113 848 PVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEASV 883 (983)
Q Consensus 848 ~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~ 883 (983)
.. .+....++. +++.+|+.+++ +|++|||||++
T Consensus 378 ~~--~~e~~~~~~-~~~~~~~~~~dG~l~lp~~PGLGve~ 414 (415)
T cd03324 378 GR--VIEYVDHLH-EHFVYPVVIQNGAYMPPTDPGYSIEM 414 (415)
T ss_pred cc--hhhhHHHHH-hhccCCCeeeCCEEECCCCCccCeee
Confidence 00 001011233 34457788774 99999999986
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-54 Score=507.36 Aligned_cols=391 Identities=14% Similarity=0.086 Sum_probs=296.3
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.++||++.|++ +||||||+||.|.+..+.... ...... + +...+....+++++
T Consensus 139 ~~~~~~~~A~~~a~~-~~gPv~i~iP~Dv~~~~~~~~----------------~~~~~~---~---~~~~~~~~~v~~~~ 195 (535)
T TIGR03394 139 TAPAEIARVLGSARE-LSRPVYLEIPRDMVNAEVEPV----------------PDDPAW---P---VDRDALDACADEVL 195 (535)
T ss_pred HhHHHHHHHHHHHHH-CCCCEEEEechhhccCccCCC----------------CCCCCC---C---CChHHHHHHHHHHH
Confidence 368899999999998 679999999999644332110 000000 0 01123456789999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccc-hhhhccCcccccc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDH-LDHALLSESVKDW 158 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~-~g~~~~~~~~~~~ 158 (983)
++|++||||+|++|+|++ +++.+++++|||++|+||+||++ | ||+||++||++ +|. .|..+++..+..+
T Consensus 196 ~~l~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tT~~-g------kg~~pe~hpl~--~G~~~G~~~~~~~~~~l 266 (535)
T TIGR03394 196 ARMRSATSPVMMVCVEVRRYGLEAKVAELAQRLGVPVVTTFM-G------RGLLADAPTPP--LGTYLGVAGDAELSRLV 266 (535)
T ss_pred HHHHhCCCCEEEEChhhcccCcHHHHHHHHHHhCCCEEEccc-c------CcCCCCCCccc--cccccCCCCCHHHHHHH
Confidence 999999999999999986 45678999999999999999997 7 89999999996 674 5656666677788
Q ss_pred CCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHH
Q 041113 159 IQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRAL 238 (983)
Q Consensus 159 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~ 238 (983)
++|||||+||+++++..+..+....++.++||||.|+..++++++.++.+ +|+..+|.+|++.+.......|...+..
T Consensus 267 ~~aDliL~iG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~~~~~~~~~i-~d~~~~L~~l~~~~~~~~~~~~~~~~~~- 344 (535)
T TIGR03394 267 EESDGLLLLGVILSDTNFAVSQRKIDLRRTIHAFDRAVTLGYHVYADIPL-AGLVDALLALLCGLPPSDRTTRGKGPHA- 344 (535)
T ss_pred HhCCEEEEECCcccccccccccccCCCCcEEEEeCCEEEECCeeECCccH-HHHHHHHHHhhhcccccccccccccccc-
Confidence 99999999999997654322212223457999999999999988888888 7888888888775432111111111110
Q ss_pred HHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCC--ceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeE
Q 041113 239 DMMVASEISFQICADYSLTEPHVAHELSRALTSN--SALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRV 316 (983)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 316 (983)
... .......++++.++++.|++.++++ .+++.|+|+ +.+|...+ ++++|+ .
T Consensus 345 ---~~~---~~~~~~~~i~p~~~~~~l~~~l~~~~~~ii~~D~G~----~~~~~~~~-----~~~~~~-----------~ 398 (535)
T TIGR03394 345 ---YPR---GLQADAEPIAPMDIARAVNDRFARHGQMPLAADIGD----CLFTAMDM-----DDAGLM-----------A 398 (535)
T ss_pred ---ccc---ccCCCCCCcCHHHHHHHHHHHhCCCCCEEEEEccCH----HHHHHHhc-----CCCcEE-----------C
Confidence 000 0001234699999999999999976 468899998 33343221 133333 3
Q ss_pred eecCCCCCccchHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcc
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPR 396 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~ 396 (983)
++++|+||| |+|+|||+++|..+++|+|+|||||+|++|||+|++| |++|+++||+||++|++++..+.. .
T Consensus 399 ~~~~g~mG~--glpaaiGa~lA~~~r~v~i~GDG~f~m~~~EL~Ta~r--~~lpv~~vV~NN~~y~~~~~~~~~-----~ 469 (535)
T TIGR03394 399 PGYYAGMGF--GVPAGIGAQCTSGKRILTLVGDGAFQMTGWELGNCRR--LGIDPIVILFNNASWEMLRVFQPE-----S 469 (535)
T ss_pred cCccchhhh--HHHHHHHHHhCCCCCeEEEEeChHHHhHHHHHHHHHH--cCCCcEEEEEECCccceeehhccC-----C
Confidence 578899999 9999999999986677899999999999999999999 999999999999999999765311 0
Q ss_pred ccccccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-CCCEEEEEEcCcccchHHHHHHHH
Q 041113 397 ILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-GTDRVIEVESCIDANATFHSMLRK 464 (983)
Q Consensus 397 ~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-~~p~lIeV~~~~~~~~~~~~~~~~ 464 (983)
. +....++||+++|++||+++.+|++.+||+++|+++++. ++|.||||.+++.+.++.++++.+
T Consensus 470 ~----~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lIev~i~~~~~~~~~~~~~~ 534 (535)
T TIGR03394 470 A----FNDLDDWRFADMAAGMGGDGVRVRTRAELAAALDKAFATRGRFQLIEAMLPRGVLSDTLARFVQ 534 (535)
T ss_pred C----cccCCCCCHHHHHHHcCCCceEeCCHHHHHHHHHHHHhcCCCeEEEEEECCcccCCHHHHHHhc
Confidence 1 112246999999999999999999999999999999875 458999999999999988877653
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=444.97 Aligned_cols=400 Identities=17% Similarity=0.197 Sum_probs=318.9
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccch---hhHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTY---CQMA 77 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~---~~i~ 77 (983)
|||+-|++||.+|++||||||.+++|.|+......++++.. ...|--.+-.. ....++. ..++
T Consensus 224 dlPrrI~EAFeiATSGRPGPVLVDlPKDvta~~l~~pip~~----------~~lPsn~~m~~----~~~~~~~~v~~~i~ 289 (675)
T KOG4166|consen 224 DLPRRIEEAFEIATSGRPGPVLVDLPKDVTAQLLIPPIPQA----------MRLPSNAYMSR----MPKPPEDFVMSHIE 289 (675)
T ss_pred HhhHHHHHHhhhhccCCCCCeEeeCcHHHHHHHhcCCchhh----------hcCCchhhHhh----CCCCchhhHHHHHH
Confidence 58999999999999999999999999995322221111100 01111001000 0112233 5799
Q ss_pred HHHHHHhcCCceEEEEccCCC-hh-HHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccc
Q 041113 78 EVLELVQGVNKGLLLVGAVHN-ED-EIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESV 155 (983)
Q Consensus 78 ~~~~~L~~AkrPvIl~G~g~~-~~-~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~ 155 (983)
+++++|+.||||||.+|+|+. +. .-.+|.+|+|+++|||.+|.+ |+ |.++.+++++ +.++|++|+..++
T Consensus 290 ~~a~Li~laKKPVlyvG~G~Ln~~d~p~lL~~fser~qIPVtttL~-GL------Gs~d~~d~lS--LhMLGMHG~~yAN 360 (675)
T KOG4166|consen 290 QIARLISLAKKPVLYVGGGCLNSSDGPRLLGRFSERTQIPVTTTLM-GL------GSYDCDDELS--LHMLGMHGTVYAN 360 (675)
T ss_pred HHHHHHHhccCceEEeCcccccCCcchHHHHHHHHhhcCcceehhh-cc------cCcCCCCchh--hhhhcccccceeh
Confidence 999999999999999999986 33 345999999999999999999 84 9999999997 6899999999999
Q ss_pred cccCCCCEEEEeCCccccHHHHHHHHhcCCc----------eEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC
Q 041113 156 KDWIQFDVIIQIGSRITSKRISQMIEECFPC----------TYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP 225 (983)
Q Consensus 156 ~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~----------~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~ 225 (983)
.+++++||||++|.||.+..|+ ....|.+. .+||+|++|..|++..++++.++||+...|..+...++.
T Consensus 361 ~Avq~aDLilA~GvRFDDRVTG-n~s~FAp~Ar~aaae~rggIiHfdispknIgKvvqp~~aveGDv~~~L~~m~s~~kn 439 (675)
T KOG4166|consen 361 YAVQHADLILAFGVRFDDRVTG-NLSAFAPRARRAAAEGRGGIIHFDISPKNIGKVVQPHVAVEGDVKLALQGMNSVLKN 439 (675)
T ss_pred hhhhccceeEEecceecccccc-chhhhChhhhhhhhcccCceEEEecCHHHhCcccCcceeeeccHHHHHHHHHhHhhc
Confidence 9999999999999999765554 44444432 299999999999999999999999999999998876643
Q ss_pred C---CChhHHHHHHHHHHHHHHHHHhhhc---ccCCCCHHHHHHHHHhhcCC---CceEEEecCcchhhhhhhcCCCccc
Q 041113 226 H---RSSKWCSFLRALDMMVASEISFQIC---ADYSLTEPHVAHELSRALTS---NSALFVGNSMAIRDLDMYGRNWTTC 296 (983)
Q Consensus 226 ~---~~~~w~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~---~~iv~~d~g~~~~~~~~~~~~~~~~ 296 (983)
. .+..|..++..+++. .+..+. ..+.+.|+.+++.|.+...+ ..+|..+.|+ ++||+.+++..
T Consensus 440 ~~~~~r~dW~~qin~wK~~----fP~sf~~~tpGe~ikPQ~vIk~Ldk~t~d~~~kviitTGVGq----HQMWAAqfy~w 511 (675)
T KOG4166|consen 440 RAEELRLDWRNQINVWKQK----FPLSFKEETPGEAIKPQYVIKVLDKLTDDTGRKVIITTGVGQ----HQMWAAQFYNW 511 (675)
T ss_pred ccchhhhhHHHHHHHHHHh----CCeeeeccCCccccChHHHHHHHHHhccCcCceEEEeccccH----HHHHHHHHhcc
Confidence 2 344677666655543 222222 23569999999999998876 6677789999 99999988774
Q ss_pred ccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEE
Q 041113 297 THTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLV 375 (983)
Q Consensus 297 ~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV 375 (983)
++|++|+ +++++|+||| |+|+||||++|+ +.-||-|-||+||.|+.+||.|+.+ .++|++|++
T Consensus 512 -~kP~~~~-----------tSGGLGtMGf--GLPAAIGAsVA~P~~iViDIDGDaSF~Mt~~ELat~rq--~~~PVKiLi 575 (675)
T KOG4166|consen 512 -KKPRQWL-----------TSGGLGTMGF--GLPAAIGASVANPDAIVIDIDGDASFIMTVQELATIRQ--ENLPVKILI 575 (675)
T ss_pred -cCcccee-----------ecCCcccccc--CcchhhcccccCcccEEEeccCCceeeeehHhhhhhhh--cCCceEEEE
Confidence 6666655 4799999999 999999999999 9999999999999999999999998 999999999
Q ss_pred EeCCCCccccCCCCCCCCCcccccc-ccccC-CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcc
Q 041113 376 INNHGGAIFSLLPIADRTEPRILDQ-YFYTT-HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCID 453 (983)
Q Consensus 376 ~NN~g~g~~~~~~~~~~~~~~~~~~-~~~~~-~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~ 453 (983)
+||...||+-+|+. ..|+. +..+. .+|||.++|+|||+++.+|++.+||++.+++.+..+||+|+||.++.+
T Consensus 576 LNNeeqGMVtQWq~------lFYe~rysHThQ~nPnf~klA~AmGikalRV~K~edL~~k~keflsTkGPvLleV~v~~k 649 (675)
T KOG4166|consen 576 LNNEEQGMVTQWQD------LFYEARYSHTHQENPNFLKLAAAMGIKALRVTKKEDLREKIKEFLSTKGPVLLEVIVPHK 649 (675)
T ss_pred ecchhhhhHHHHHH------HHHHhhhccccccCccHHHHHHhcCCchheeehHHHHHHHHHHHhCCCCCeEEEEEccCc
Confidence 99999999866521 12222 22232 489999999999999999999999999999999999999999999986
Q ss_pred c
Q 041113 454 A 454 (983)
Q Consensus 454 ~ 454 (983)
+
T Consensus 650 e 650 (675)
T KOG4166|consen 650 E 650 (675)
T ss_pred c
Confidence 5
|
|
| >cd03322 rpsA The starvation sensing protein RpsA from E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-52 Score=469.40 Aligned_cols=335 Identities=17% Similarity=0.201 Sum_probs=267.9
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHH-HHHhHhccCc
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLR-FLLHFMTGAK 572 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~-~~~~~l~g~~ 572 (983)
||++|+++.. .|. ++.++|||+|++|++||||+.+.. .. ..+...++ .+.|.|+|++
T Consensus 1 kI~~ie~~~~-----~~~-------------~~~vlV~v~td~G~~G~GE~~~~~-~~---~~~~~~i~~~l~p~l~G~d 58 (361)
T cd03322 1 KITAIEVIVT-----CPG-------------RNFVTLKITTDQGVTGLGDATLNG-RE---LAVKAYLREHLKPLLIGRD 58 (361)
T ss_pred CeEEEEEEEE-----CCC-------------CCEEEEEEEeCCCCeEEEecccCC-CH---HHHHHHHHHHHHHHcCCCC
Confidence 7999998544 221 346899999999999999986422 11 22333443 5899999999
Q ss_pred ccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecC
Q 041113 573 ISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDS 652 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~ 652 (983)
+.+++.++..+ +.............|++|||+|||||+||.+|+|||+||||.. ++++++|++. .
T Consensus 59 ~~~~~~~~~~~-----~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LLGg~~---------r~~v~~ya~~-~ 123 (361)
T cd03322 59 ANRIEDIWQYL-----YRGAYWRRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLLGGKS---------RDGIMVYSHA-S 123 (361)
T ss_pred hhHHHHHHHHH-----HHhcccCCchHHHHHHHHHHHHHHHHhHhhcCCcHHHHcCCCc---------cCeeeEEEeC-C
Confidence 98765544321 1111011122356789999999999999999999999999975 5789999765 3
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..+++++.+++++++++||++||+|+ +++|+++|+++|+++.||+|||++||+++|+++++.|+++++.||
T Consensus 124 ~~~~~~~~~~a~~~~~~Gf~~~KiKv---------~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~i 194 (361)
T cd03322 124 GRDIPELLEAVERHLAQGYRAIRVQL---------PKLFEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEPYRLFWM 194 (361)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEeeCH---------HHHHHHHHhccCCCceEEEECCCCCCHHHHHHHHHHhhhcCCCEE
Confidence 45778899999999999999999997 779999999999999999999999999999999999999999999
Q ss_pred ecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEE
Q 041113 733 EEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAV 809 (983)
Q Consensus 733 EeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~ 809 (983)
|||++ +++++++|++++++||++||++++..+ +..+++.+ +|++|+|++++||++++++++++|+++|++++
T Consensus 195 EeP~~~~d~~~~~~L~~~~~~pia~gE~~~~~~~-----~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~ 269 (361)
T cd03322 195 EDPTPAENQEAFRLIRQHTATPLAVGEVFNSIWD-----WQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTG 269 (361)
T ss_pred ECCCCcccHHHHHHHHhcCCCCEEeccCCcCHHH-----HHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeee
Confidence 99998 788999999999999999999998764 66666544 79999999999999999999999999999988
Q ss_pred eCCCC-chHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeEEec
Q 041113 810 VSAAF-ESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEASVA 884 (983)
Q Consensus 810 ~~~~~-es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d 884 (983)
.|++. +++++.++++|+++++++.. + . . ......+..|++.+|+.+++ +|++||||+++|
T Consensus 270 ~h~~~~~s~i~~aa~~~laa~~~~~~--~---~------e----~~~~~~~~~~~~~~~~~~~dG~i~~p~~PGlGi~~d 334 (361)
T cd03322 270 WHGPTDLSPVGMAAALHLDLWVPNFG--I---Q------E----YMRHAEETLEVFPHSVRFEDGYLHPGEEPGLGVEID 334 (361)
T ss_pred ccCCCCcchHHHHHHHHHHhhcCcce--E---E------E----eccccchHHHhcCCCCeecCCeEeCCCCCccCceEC
Confidence 87776 69999999999999887531 0 0 0 00111122355566777763 999999999999
Q ss_pred chhhhhhhcccc
Q 041113 885 KATHILQNLQIN 896 (983)
Q Consensus 885 ~a~~~~~~~~~~ 896 (983)
++.++.+...
T Consensus 335 --~~~l~~~~~~ 344 (361)
T cd03322 335 --EKAAAKFPYV 344 (361)
T ss_pred --HHHHhhCCCC
Confidence 8888888654
|
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad. |
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-52 Score=471.59 Aligned_cols=341 Identities=23% Similarity=0.279 Sum_probs=279.0
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHH-HHhHhccCc
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRF-LLHFMTGAK 572 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~-~~~~l~g~~ 572 (983)
||++|+++.+++|++.| .+.. ..++.++|||+|++|++||||+.+.+. ...+...+.. ++|.|+|++
T Consensus 1 kI~~i~~~~~~~p~~~~----~~~~----~~~~~~~V~v~~~~G~~G~GE~~~~~~----~~~~~~~l~~~~~p~l~G~~ 68 (357)
T cd03316 1 KITDVETFVLRVPLPEP----GGAV----TWRNLVLVRVTTDDGITGWGEAYPGGR----PSAVAAAIEDLLAPLLIGRD 68 (357)
T ss_pred CeeEEEEEEEecCCccc----cccc----ccceEEEEEEEeCCCCEEEEeccCCCC----chHHHHHHHHHHHHHccCCC
Confidence 69999999999999988 2221 348899999999999999999987542 1223444555 899999999
Q ss_pred ccccccccccCchhhhhhhc-CCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeec
Q 041113 573 ISYFLPLLKGSFSSWIWSTL-GIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALID 651 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~ 651 (983)
+.++..++..+ .... .....+..+++++|||+||||++||.+|+|||+||||.. +.+||+|+++.
T Consensus 69 ~~~~~~~~~~l-----~~~~~~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llGg~~---------~~~v~~~~~~~ 134 (357)
T cd03316 69 PLDIERLWEKL-----YRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLGGKV---------RDRVRVYASGG 134 (357)
T ss_pred hHHHHHHHHHH-----HHhcccCCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccCCcc---------CCceeeEEecC
Confidence 88765554321 1111 111122357899999999999999999999999999974 46899999875
Q ss_pred CCC-CHHHHHHHHHHhhhcCCCEEEEeccCCCC-----hHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcc
Q 041113 652 SNK-SPVEVASIATTLVEEGFTAIKLKVARRAD-----PIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIK 725 (983)
Q Consensus 652 ~~~-~~~~~~~~~~~~~~~G~~~~KiKig~~~~-----~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~ 725 (983)
... +++++.+++++++++||+.||+|+|.. + ++.|+++|+++|+++|+++.|++|+|++|+.++|+++++.|+
T Consensus 135 ~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~-~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~ 213 (357)
T cd03316 135 GYDDSPEELAEEAKRAVAEGFTAVKLKVGGP-DSGGEDLREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALE 213 (357)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC-CcchHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 444 799999999999999999999999862 4 689999999999999999999999999999999999999999
Q ss_pred cCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHH
Q 041113 726 DCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQ 802 (983)
Q Consensus 726 ~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~ 802 (983)
++++.|+|||++ +++++++|++++++||++||++.++.+ +..+++. .+|++|+|++++||++++++++++|+
T Consensus 214 ~~~i~~iEqP~~~~~~~~~~~l~~~~~ipi~~dE~~~~~~~-----~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~ 288 (357)
T cd03316 214 EYDLFWFEEPVPPDDLEGLARLRQATSVPIAAGENLYTRWE-----FRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAE 288 (357)
T ss_pred ccCCCeEcCCCCccCHHHHHHHHHhCCCCEEeccccccHHH-----HHHHHHhCCCCEEecCccccCCHHHHHHHHHHHH
Confidence 999999999998 688899999999999999999998764 5566654 47999999999999999999999999
Q ss_pred HcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccc-hhcccccCCCCCceeec----cCCCC
Q 041113 803 RHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGT-YQWLKEDVTTDPISICH----NSCRG 877 (983)
Q Consensus 803 ~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~d~~~~p~~~~~----~P~~p 877 (983)
++|+++++|++.+ +|+.++++|++++++|... .++.. ...+..|+..+|+.+++ +|++|
T Consensus 289 ~~g~~~~~~~~~~-~i~~aa~~hla~a~~~~~~---------------~e~~~~~~~~~~~~~~~~~~~~~G~~~~p~~p 352 (357)
T cd03316 289 AHGVRVAPHGAGG-PIGLAASLHLAAALPNFGI---------------LEYHLDDLPLREDLFKNPPEIEDGYVTVPDRP 352 (357)
T ss_pred HcCCeEeccCCCC-HHHHHHHHHHHHhCcChhe---------------EEeecccchhhHhhccCCCeeeCCEEECCCCC
Confidence 9999999888766 9999999999999886421 01111 12234456677888873 99999
Q ss_pred eeeEE
Q 041113 878 FVEAS 882 (983)
Q Consensus 878 GlGv~ 882 (983)
|||++
T Consensus 353 GlGv~ 357 (357)
T cd03316 353 GLGVE 357 (357)
T ss_pred CCCCC
Confidence 99985
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=474.51 Aligned_cols=361 Identities=21% Similarity=0.274 Sum_probs=283.9
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAK 572 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~ 572 (983)
|+|.+|+.+.+.+|+..|+.++.... ..+..++|+|+|++|++||||+.+.......... .. ..+.+.++|++
T Consensus 1 ~~i~~i~~~~~~~~~~~~~~~~~~~~----~~~~~v~v~i~~d~G~~G~GE~~~~~~~~~~~~~-~~--~~~~~~l~g~d 73 (372)
T COG4948 1 MKIMKITVIPVAVPLSPPFVTSGGTV----RFFTRVIVEITTDDGIVGWGEAVPGGRARYGEEA-EA--VLLAPLLIGRD 73 (372)
T ss_pred CCceeEEEEEeeeecCCccccccccc----ccceEEEEEEEECCCceeeccccCcccccchhhh-hH--HHHHHHhcCCC
Confidence 46788888889999999999887433 3488999999999999999999886432211111 11 15788999999
Q ss_pred ccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecC
Q 041113 573 ISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDS 652 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~ 652 (983)
+.++..++...+. .... ...+...+|++|||+|||||+||.+|+|||+||||.. +++|++|.+...
T Consensus 74 ~~~i~~~~~~~~~----~~~~-~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLGg~~---------r~~v~~y~~~~~ 139 (372)
T COG4948 74 PFDIERIWQKLYR----AGFA-RRGGITMAAISAVDIALWDLAGKALGVPVYKLLGGKV---------RDEVRAYASGGG 139 (372)
T ss_pred HHHHHHHHHHHHH----hccc-ccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCce---------eeeEEEEEecCC
Confidence 9887664432221 1111 1233456899999999999999999999999999987 578999988743
Q ss_pred -CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCce
Q 041113 653 -NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQY 731 (983)
Q Consensus 653 -~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~ 731 (983)
..+++...+.++.+.+.||+.+|+|+|.. +.+.|+++|+++|+++|++++|++|+|++||+++|+++++.|+++++.|
T Consensus 140 ~~~~~e~~~~~~~~~~~~G~~~~Klk~g~~-~~~~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~~~~l~~~~l~~ 218 (372)
T COG4948 140 GEDPEEMAAEAARALVELGFKALKLKVGVG-DGDEDLERVRALREAVGDDVRLMVDANGGWTLEEAIRLARALEEYGLEW 218 (372)
T ss_pred CCCCHHHHHHHHHHHHhcCCceEEecCCCC-chHHHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHHHHHhcccCcce
Confidence 24566666777777779999999999983 6679999999999999999999999999999999999999999999999
Q ss_pred eecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcE
Q 041113 732 IEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMA 808 (983)
Q Consensus 732 iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~ 808 (983)
||||++ |.+++++|++.+.+|||+||++++..+ ++.+++.+ +|++|+|++++|||+++++++++|+.+++.+
T Consensus 219 iEeP~~~~d~~~~~~l~~~~~~PIa~gEs~~~~~~-----~~~l~~~~a~div~~d~~~~GGite~~kia~~A~~~~~~v 293 (372)
T COG4948 219 IEEPLPPDDLEGLRELRAATSTPIAAGESVYTRWD-----FRRLLEAGAVDIVQPDLARVGGITEALKIAALAEGFGVMV 293 (372)
T ss_pred EECCCCccCHHHHHHHHhcCCCCEecCcccccHHH-----HHHHHHcCCCCeecCCccccCCHHHHHHHHHHHHHhCCce
Confidence 999999 788999999988899999999999864 77777766 7999999999999999999999999888863
Q ss_pred EeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceee----ccCCCCeeeEEec
Q 041113 809 VVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISIC----HNSCRGFVEASVA 884 (983)
Q Consensus 809 ~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~----~~P~~pGlGv~~d 884 (983)
+++.++++++++++|++++.+|. .. ..... .+ ....+..+++.+|+.++ .+|++||||+++|
T Consensus 294 --~~h~~~~i~~aa~~hla~~~~~~--~~-------~~~~~--~~-~~~~~~~~~~~~~~~~~~g~~~~p~~PGlGv~~~ 359 (372)
T COG4948 294 --GPHVEGPISLAAALHLAAALPNF--GD-------LEGPL--AL-ADDDWYDDLVEEPLIVRGGLVHVPDGPGLGVELD 359 (372)
T ss_pred --eccCchHHHHHHHHHHhhccchh--hh-------ccccc--cc-cccchhhhhccCCccccCCeEeCCCCCCCCcccc
Confidence 44455999999999999997642 11 10000 00 01112234677775554 3999999999999
Q ss_pred chhhhhhhcccc
Q 041113 885 KATHILQNLQIN 896 (983)
Q Consensus 885 ~a~~~~~~~~~~ 896 (983)
++.++++...
T Consensus 360 --~~~~~~~~~~ 369 (372)
T COG4948 360 --EDALAKYRVR 369 (372)
T ss_pred --HHHHHhcccc
Confidence 7777776643
|
|
| >cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-52 Score=469.59 Aligned_cols=349 Identities=16% Similarity=0.122 Sum_probs=269.4
Q ss_pred eEeEEEEEEEEeeCCCCCcc----ccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhc
Q 041113 494 KICRMEYSLYRIQLCAPPTS----SYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMT 569 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~----~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~ 569 (983)
||++|+++.+++|++.|+.+ +.++. ..++.++|||+|++|++||||+.+. . . ......+.+.|.|+
T Consensus 1 ~I~~i~~~~~~~pl~~~~~~~~~~~~~~~----~~~~~~~Vri~td~G~~G~G~~~~~-~--~---~~~~~~~~l~p~li 70 (368)
T cd03329 1 KITDVEVTVFEYPTQPVSFDGGHHHPGPA----GTRKLALLTIETDEGAKGHAFGGRP-V--T---DPALVDRFLKKVLI 70 (368)
T ss_pred CeEEEEEEEEEeecCcccccccccCCCCC----ccceEEEEEEEECCCCeEEEecCCc-h--h---HHHHHHHHHHHhcC
Confidence 69999999999999998765 34433 3488999999999999999996431 1 1 11223456899999
Q ss_pred cCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEe
Q 041113 570 GAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICAL 649 (983)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~ 649 (983)
|+++.+++.++..+. .... +....|++||||||||++||.+|+|||+||||.+ ++|++|++
T Consensus 71 G~d~~~~~~~~~~~~-----~~~~----~~~~~A~said~AlwDl~gk~~g~Pl~~LLGg~~----------~~v~~y~s 131 (368)
T cd03329 71 GQDPLDRERLWQDLW-----RLQR----GLTDRGLGLVDIALWDLAGKYLGLPVHRLLGGYR----------EKIPAYAS 131 (368)
T ss_pred CCChhHHHHHHHHHH-----HHhc----CcchhHHHHHHHHHHHHhhhhcCCcHHHHhhccc----------cceeEEEe
Confidence 999988766554221 1110 1234689999999999999999999999999954 68999987
Q ss_pred ecCC------CCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhh
Q 041113 650 IDSN------KSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFL 723 (983)
Q Consensus 650 ~~~~------~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~ 723 (983)
+... .+++++.+.+++++++||++||+|+|...++++|++++++||+++|+++.|++|+|++||.++|+++++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~ 211 (368)
T cd03329 132 TMVGDDLEGLESPEAYADFAEECKALGYRAIKLHPWGPGVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRA 211 (368)
T ss_pred cCCCcccccCCCHHHHHHHHHHHHHcCCCEEEEecCCchhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHH
Confidence 6322 3889999999999999999999998752236889999999999999999999999999999999999999
Q ss_pred cccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccC-cCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHH
Q 041113 724 IKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDK-FQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIAR 799 (983)
Q Consensus 724 l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~-~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~ 799 (983)
|+++++.|+|||++ +++++++|++++++||++||++.+ +.+ +..+++.+ +|++|+|++++||+++++++++
T Consensus 212 l~~~~l~~iEeP~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~-----~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~ 286 (368)
T cd03329 212 LEELGFFWYEDPLREASISSYRWLAEKLDIPILGTEHSRGALES-----RADWVLAGATDFLRADVNLVGGITGAMKTAH 286 (368)
T ss_pred hhhcCCCeEeCCCCchhHHHHHHHHhcCCCCEEccCcccCcHHH-----HHHHHHhCCCCEEecCccccCCHHHHHHHHH
Confidence 99999999999998 678899999999999999999998 653 55555544 7999999999999999999999
Q ss_pred HHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceee----ccCC
Q 041113 800 WAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISIC----HNSC 875 (983)
Q Consensus 800 ~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~----~~P~ 875 (983)
+|+++|++++.|++ .++++|++++++|..+ .+.++..+. .....+.......+++.++ .+|+
T Consensus 287 ~a~~~gi~~~~h~~------~~a~~hlaaa~~~~~~-----~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~G~~~~p~ 352 (368)
T cd03329 287 LAEAFGLDVELHGN------GAANLHVIAAIRNTRY-----YERGLLHPS---QKYDVYAGYLSVLDDPVDSDGFVHVPK 352 (368)
T ss_pred HHHHcCCEEEEECh------HHHHHHHHhcCCCcee-----EEEeccccc---ccccccccchhccCCCcCCCCeEECCC
Confidence 99999999876553 5789999999986421 121110000 0000000001111223333 3899
Q ss_pred CCeeeEEecchhhhhhh
Q 041113 876 RGFVEASVAKATHILQN 892 (983)
Q Consensus 876 ~pGlGv~~d~a~~~~~~ 892 (983)
+|||||++| ++.+++
T Consensus 353 ~PGlGv~~d--~~~l~~ 367 (368)
T cd03329 353 GPGLGVEID--FDYIER 367 (368)
T ss_pred CCcCCccCC--HHHHhh
Confidence 999999999 666553
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-52 Score=463.85 Aligned_cols=318 Identities=16% Similarity=0.183 Sum_probs=249.5
Q ss_pred EEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCcccccccccccCchhhhhhhc-CCCCCcchhhHHH
Q 041113 527 GFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTL-GIPACEIFPSVRC 605 (983)
Q Consensus 527 ~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~ 605 (983)
.++|||+||+|++||||+.+. ... .....+.+.|.|+|+++.+++.++..++ +.. .....+....|++
T Consensus 11 ~v~V~i~td~Gi~G~GE~~~~---~~~---~~~i~~~l~p~liG~dp~~~~~~~~~l~-----~~~~~~~~~~~~~~a~s 79 (341)
T cd03327 11 WLFVEIETDDGTVGYANTTGG---PVA---CWIVDQHLARFLIGKDPSDIEKLWDQMY-----RATLAYGRKGIAMAAIS 79 (341)
T ss_pred EEEEEEEECCCCeEEecCCCc---hHH---HHHHHHHHHHHhCCCCchHHHHHHHHHH-----hhccccCCccHHHhHHH
Confidence 468999999999999998532 111 1122346899999999988766654321 111 1112233457899
Q ss_pred HHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC----
Q 041113 606 GLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR---- 681 (983)
Q Consensus 606 aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~---- 681 (983)
||||||||++||.+|+|||+||||+. +++|++|++.....+++++.+++++++++||++||+|+|..
T Consensus 80 aid~AlwDl~gK~~g~Pv~~LLGG~~---------r~~i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~ 150 (341)
T cd03327 80 AVDLALWDLLGKIRGEPVYKLLGGRT---------RDKIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGPSDG 150 (341)
T ss_pred HHHHHHHHhcccccCCCHHHHcCCCc---------CCceEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCcc
Confidence 99999999999999999999999975 57899998753346889999999999999999999999741
Q ss_pred -CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCC
Q 041113 682 -ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDET 758 (983)
Q Consensus 682 -~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs 758 (983)
.++++|+++|+++|+++|+++.||+|+|++|++++|+++++.|+++++.|||||++ +++++++|++++++||++||+
T Consensus 151 ~~~~~~d~~~v~avr~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~pIa~gE~ 230 (341)
T cd03327 151 HAGLRKNVELVRAIREAVGYDVDLMLDCYMSWNLNYAIKMARALEKYELRWIEEPLIPDDIEGYAELKKATGIPISTGEH 230 (341)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhhcCCccccCCCCccCHHHHHHHHhcCCCCeEeccC
Confidence 13578999999999999999999999999999999999999999999999999998 788999999999999999999
Q ss_pred ccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhh
Q 041113 759 IDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYL 837 (983)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~ 837 (983)
+++..+ +..+++. .+|++|+|++++||++++++++++|+++|++++. |. +.++++|++++++|+. .
T Consensus 231 ~~~~~~-----~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~-h~-----~~~a~~hlaaa~~~~~--~ 297 (341)
T cd03327 231 EYTVYG-----FKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVP-HA-----SQIYNYHFIMSEPNSP--F 297 (341)
T ss_pred ccCHHH-----HHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeecc-cc-----HHHHHHHHHHhCcCce--e
Confidence 998764 6666654 4799999999999999999999999999999664 43 3568999999988642 1
Q ss_pred hhhccccCCCCCccCccchhcccccCCCCCceee----ccCCCCeeeEEec
Q 041113 838 CKVMNRELCPPVAQGLGTYQWLKEDVTTDPISIC----HNSCRGFVEASVA 884 (983)
Q Consensus 838 ~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~----~~P~~pGlGv~~d 884 (983)
.++ ...... .....++ .+++.+|+.++ .+|++|||||++|
T Consensus 298 ---~e~--~~~~~~-~~~~~~~-~~~~~~~~~~~~G~~~~p~~PGLGve~d 341 (341)
T cd03327 298 ---AEY--LPNSPD-EVGNPLF-YYIFLNEPVPVNGYFDLSDKPGFGLELN 341 (341)
T ss_pred ---EEe--cccccc-cccchhH-HHhccCCCcccCCeEECCCCCccCeecC
Confidence 111 000000 0011223 34555666665 3999999999986
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-52 Score=498.72 Aligned_cols=384 Identities=18% Similarity=0.151 Sum_probs=296.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
++++|++|++.|+++++|||||+||.|++....... ..+... .. ....++++.++++++
T Consensus 142 ~~~~l~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~---------------~~~~~~--~~----~~~~~~~~~i~~~~~ 200 (542)
T PRK08266 142 APALVAEAFQQMLSGRPRPVALEMPWDVFGQRAPVA---------------AAPPLR--PA----PPPAPDPDAIAAAAA 200 (542)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEeCHhHhhCccccc---------------cccccc--CC----CCCCCCHHHHHHHHH
Confidence 678999999999999999999999999533221100 000000 00 122456678999999
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQF 161 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~a 161 (983)
+|++||||+|++|+|+. ++.+++.+|||++|+||++|+. | ||+||++||++ .|.. .++..+.+|
T Consensus 201 ~L~~AkrPvIv~G~g~~-~a~~~l~~lae~~g~pv~tt~~-~------kg~~~~~hp~~--~g~~------~~~~~~~~a 264 (542)
T PRK08266 201 LIAAAKNPMIFVGGGAA-GAGEEIRELAEMLQAPVVAFRS-G------RGIVSDRHPLG--LNFA------AAYELWPQT 264 (542)
T ss_pred HHHhCCCCEEEECCChh-hHHHHHHHHHHHHCCCEEEecc-c------cccCCCCCccc--cCCH------HHHHHHHhC
Confidence 99999999999999964 4577999999999999999996 6 89999999996 4543 233567899
Q ss_pred CEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC--CCChhHHHHHHHHH
Q 041113 162 DVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP--HRSSKWCSFLRALD 239 (983)
Q Consensus 162 Dlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~--~~~~~w~~~~~~~~ 239 (983)
|+||+||+++.+. +..|....+..++||||.|+..+++ +..++.|.+|++.+|++|.+.+.. .....|...+...+
T Consensus 265 Dlvl~lG~~~~~~-~~~~~~~~~~~~~i~id~d~~~~~~-~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~ 342 (542)
T PRK08266 265 DVVIGIGSRLELP-TFRWPWRPDGLKVIRIDIDPTEMRR-LKPDVAIVADAKAGTAALLDALSKAGSKRPSRRAELRELK 342 (542)
T ss_pred CEEEEeCCCcCcc-cccccccCCCCcEEEEECCHHHhCC-cCCCceEecCHHHHHHHHHHhhhhcccCchHHHHHHHHHH
Confidence 9999999999766 4444222223479999999999988 888999999999999999987753 12345655544333
Q ss_pred HHHHHHHHhhhcccCCCCHH-HHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEee
Q 041113 240 MMVASEISFQICADYSLTEP-HVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAG 318 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 318 (983)
..+... ...+++. .+++.|++.+|++++++.|+|+ +.+|...++++ ..|++|+ .++
T Consensus 343 ~~~~~~-------~~~~~~~~~~~~~l~~~lp~d~ivv~d~g~----~~~~~~~~~~~-~~~~~~~-----------~~~ 399 (542)
T PRK08266 343 AAARQR-------IQAVQPQASYLRAIREALPDDGIFVDELSQ----VGFASWFAFPV-YAPRTFV-----------TCG 399 (542)
T ss_pred Hhhhhc-------cccCCHHHHHHHHHHHhcCCCcEEEeCCcH----HHHHHHHhccc-CCCCcEE-----------eCC
Confidence 221111 1235665 4799999999999999999888 55555544443 3444443 356
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
++|+||| ++|+|||++++. +++|||++|||||+|++|||+|+++ |++|+++||+||++|++++..+.. ..
T Consensus 400 ~~GsmG~--~lp~aiGa~la~p~~~vv~v~GDG~f~~~~~eL~ta~~--~~lpv~ivv~NN~~y~~~~~~~~~-----~~ 470 (542)
T PRK08266 400 YQGTLGY--GFPTALGAKVANPDRPVVSITGDGGFMFGVQELATAVQ--HNIGVVTVVFNNNAYGNVRRDQKR-----RF 470 (542)
T ss_pred CCccccc--HHHHHHHHHHhCCCCcEEEEEcchhhhccHHHHHHHHH--hCCCeEEEEEeCCcchHHHHHHHH-----hc
Confidence 7899999 999999999999 8999999999999999999999999 999999999999999998653211 00
Q ss_pred cccccccC-CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccch
Q 041113 398 LDQYFYTT-HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANA 456 (983)
Q Consensus 398 ~~~~~~~~-~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~ 456 (983)
..+++++. +++||.++|++||+++.+|++.+||+++|+++++.++|+||||.|++.+..
T Consensus 471 ~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~i~~~~~~ 530 (542)
T PRK08266 471 GGRVVASDLVNPDFVKLAESFGVAAFRVDSPEELRAALEAALAHGGPVLIEVPVPRGSEA 530 (542)
T ss_pred CCCcccCCCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCcEEEEEEecCCCCc
Confidence 12223332 468999999999999999999999999999999889999999999887644
|
|
| >TIGR03247 glucar-dehydr glucarate dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-51 Score=461.29 Aligned_cols=355 Identities=15% Similarity=0.163 Sum_probs=271.8
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAK 572 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~ 572 (983)
..||++++.++... ..+..+..+.+ +. ..+.++|+|+||+|++||||+.+ .++ +...++.++|.|+|++
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~iV~v~Td~Gi~G~GEa~~----~~~---~~~~l~~lap~LiG~d 72 (441)
T TIGR03247 4 PVVTEMRVIPVAGH-DSMLLNLSGAH--AP-FFTRNIVILTDSSGNTGVGEVPG----GEK---IRATLEDARPLVVGKP 72 (441)
T ss_pred CEEeEEEEEeeccc-cchhccccccC--CC-cceEEEEEEEECCCCeEEEeCCC----cHH---HHHHHHHHHHHhcCCC
Confidence 35777777766432 22344444444 22 48899999999999999999854 122 2334567899999999
Q ss_pred ccccccccccCchhhhhh-hcCCCCC-----cchhhHHHHHHHHHHHHHHHHcCCChhhhcC-CCCccccccccccceeE
Q 041113 573 ISYFLPLLKGSFSSWIWS-TLGIPAC-----EIFPSVRCGLEMAILNAIAVKHGSSFLNILY-PLTEIDEEISKRSTSIK 645 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~a~~aid~AlwDl~gk~~g~pv~~lLG-g~~~~~~~~~~~~~~i~ 645 (983)
+.+++.++..+.. ..+. ..+.... ....+|++|||||||||+||.+|+|||+||| |.. +++|+
T Consensus 73 p~~~e~i~~~m~~-~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLGgg~~---------r~~vp 142 (441)
T TIGR03247 73 LGEYQNVLNDVRA-TFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLGEGQQ---------RDEVE 142 (441)
T ss_pred HHHHHHHHHHHHH-HhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhCCCCc---------cceEE
Confidence 9887766543211 1100 0000000 1235799999999999999999999999999 544 46788
Q ss_pred EEEeecC----------------------------CCCHHHHHHHHHHhhh-cCCCEEEEeccCCCChHHHHHHHHHHHH
Q 041113 646 ICALIDS----------------------------NKSPVEVASIATTLVE-EGFTAIKLKVARRADPIKDAEVIQEVRK 696 (983)
Q Consensus 646 ~~~~~~~----------------------------~~~~~~~~~~~~~~~~-~G~~~~KiKig~~~~~~~d~~~v~~vr~ 696 (983)
+|++..+ ..++++++++++++++ +||++||+|+|.. ++++|+++|+++|+
T Consensus 143 ~y~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~a~KiKvG~~-~~~~Di~~v~avRe 221 (441)
T TIGR03247 143 MLGYLFFIGDRKRTSLPYRSGPQDDDDWFRLRHEEALTPEAVVRLAEAAYDRYGFRDFKLKGGVL-RGEEEIEAVTALAK 221 (441)
T ss_pred EeeeeeeccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCCEEEEecCCC-ChHHHHHHHHHHHH
Confidence 8864210 1368889999998876 5999999999862 56899999999999
Q ss_pred HcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--C----hHHHHHHHhhcCCcEEeCCCccCcCCChHHHH
Q 041113 697 KVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--N----EEDIIKYCEESGLPVALDETIDKFQKDPLNML 770 (983)
Q Consensus 697 ~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~----~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~ 770 (983)
++ +++.|++|+|++||.++|++++++|+++ +.|||||++ + ++++++|++++++||++||++++..+ +
T Consensus 222 a~-~d~~L~vDAN~~wt~~~Ai~~~~~Le~~-~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~-----~ 294 (441)
T TIGR03247 222 RF-PQARITLDPNGAWSLDEAIALCKDLKGV-LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQ-----M 294 (441)
T ss_pred hC-CCCeEEEECCCCCCHHHHHHHHHHhhhh-hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHH-----H
Confidence 98 8999999999999999999999999999 999999998 5 67899999999999999999998753 6
Q ss_pred HhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCC
Q 041113 771 EKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPV 849 (983)
Q Consensus 771 ~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~ 849 (983)
+.+++.+ +|++++|+. +|||++++|++++|+++|++++.+++++++|+.++++|++++++|..
T Consensus 295 ~~li~~~avdi~~~d~~-~gGIt~~~kIa~lA~a~Gi~v~~h~~~~~~i~~aa~~hlaaa~p~~~--------------- 358 (441)
T TIGR03247 295 GHALQLQAVDIPLADPH-FWTMQGSVRVAQMCHDWGLTWGSHSNNHFDISLAMFTHVAAAAPGKI--------------- 358 (441)
T ss_pred HHHHHhCCCCEEeccCC-cchHHHHHHHHHHHHHcCCEEEEeCCccCHHHHHHHHHHHHhCCCCc---------------
Confidence 6666554 699999995 67899999999999999999877666789999999999999887420
Q ss_pred ccCccchhccc--ccCCCCCceeec----cCCCCeeeEEecchhhhhhhccc
Q 041113 850 AQGLGTYQWLK--EDVTTDPISICH----NSCRGFVEASVAKATHILQNLQI 895 (983)
Q Consensus 850 ~~g~~~~~~~~--~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~ 895 (983)
.++++..++. ++++.+|+.+++ +|++|||||++| ++.++++-.
T Consensus 359 -~~~d~~~~~~~~~~l~~~p~~~~dG~i~vp~~PGLGve~d--~~~l~~~~~ 407 (441)
T TIGR03247 359 -TAIDTHWIWQDGQRLTKEPLEIKGGKIQVPDKPGLGVEID--MDAVDAAHE 407 (441)
T ss_pred -cccCcchhhhcccccccCCceeECCEEecCCCCCCCceeC--HHHHHHHHH
Confidence 0112221211 356677888773 999999999999 887777643
|
Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized. |
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=489.80 Aligned_cols=390 Identities=16% Similarity=0.144 Sum_probs=288.8
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|++|++.|.++|||||||+||.|.+..+.... ..+.... ... ..+.++++.+++++
T Consensus 154 ~~~~~l~~A~~~a~~~~~GPV~i~iP~Dv~~~~~~~~---------------~~~~~~~--~~~--~~~~~~~~~~~~~~ 214 (569)
T PRK08327 154 QIGEVVARAIQIAMSEPKGPVYLTLPREVLAEEVPEV---------------KADAGRQ--MAP--APPAPDPEDIARAA 214 (569)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEECcHHHHhhhcccc---------------ccCcccc--CCC--CCCCCCHHHHHHHH
Confidence 3678999999999999999999999998533222100 0000000 000 11235677899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+|++ .++.+++.+|||++++||++|++ | ||+||++||++ +|.+ ++..++
T Consensus 215 ~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~-g------kg~~~~~hp~~--~G~~-------~~~~~~ 278 (569)
T PRK08327 215 EMLAAAERPVIITWRAGRTAEGFASLRRLAEELAIPVVEYAG-E------VVNYPSDHPLH--LGPD-------PRADLA 278 (569)
T ss_pred HHHHhCCCCEEEEecccCCcccHHHHHHHHHHhCCCEEecCC-C------ceeCCCCCccc--cccc-------cchhhh
Confidence 999999999999999987 45678999999999999999997 6 89999999996 4543 456778
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCC---CCCCeeEEEEcCHHHHHHHHHhccCCCCCh-------
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHD---PSHSVTHRIQSTIVQFVDFLLKVQVPHRSS------- 229 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~---~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~------- 229 (983)
+|||||++|+++....+. + ...+..++||||.|+..++ ++++.++.|++|++.++++|++.+......
T Consensus 279 ~aDlvl~lG~~l~~~~~~-~-~~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~ 356 (569)
T PRK08327 279 EADLVLVVDSDVPWIPKK-I-RPDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLKSLASAERRRARR 356 (569)
T ss_pred hCCEEEEeCCCCCCcccc-c-cCCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHHhhcccchhhhhhh
Confidence 999999999998644332 1 1112347999999998875 478899999999999999999877532211
Q ss_pred ---hHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCccccccccccccc
Q 041113 230 ---KWCSFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLN 306 (983)
Q Consensus 230 ---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~ 306 (983)
.|.....+.+........ ....+.++++.+++++|++.+|++++++.+.+ |..+++++ .+|++|+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~~~l~~~~~vv~~~~--------~~~~~~~~-~~~~~~~-- 424 (569)
T PRK08327 357 RRAAVRELRIRQEAAKRAEIE-RLKDRGPITPAYLSYCLGEVADEYDAIVTEYP--------FVPRQARL-NKPGSYF-- 424 (569)
T ss_pred hHHHHHHHHHHhhhhhhhhhh-ccCCCCCcCHHHHHHHHHHhcCccceEEeccH--------HHHHhcCc-cCCCCee--
Confidence 233222221111111110 01234579999999999999999998885543 33444443 4444443
Q ss_pred CCCCCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccch--HHHHHhhccCCCEEEEEEeCCCCcc
Q 041113 307 SEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNG--LAILKQRMKRKPILMLVINNHGGAI 383 (983)
Q Consensus 307 ~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~e--L~Ta~~~~~~lpv~iiV~NN~g~g~ 383 (983)
.++++|+||| |+|+|+|+++|+ +++||+|+|||||+|+++| |+|++| |++|+++||+||++|++
T Consensus 425 ---------~~~~~gsmG~--~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~e~~l~ta~~--~~l~~~ivv~NN~~yg~ 491 (569)
T PRK08327 425 ---------GDGSAGGLGW--ALGAALGAKLATPDRLVIATVGDGSFIFGVPEAAHWVAER--YGLPVLVVVFNNGGWLA 491 (569)
T ss_pred ---------eCCCCCCCCc--chHHHHHHhhcCCCCeEEEEecCcceeecCcHHHHHHHHH--hCCCEEEEEEeCccccc
Confidence 3678999999 999999999999 9999999999999999987 899999 99999999999999999
Q ss_pred ccCCCCCCCCC--ccccccccccC--CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc----CCCEEEEEEcCc
Q 041113 384 FSLLPIADRTE--PRILDQYFYTT--HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL----GTDRVIEVESCI 452 (983)
Q Consensus 384 ~~~~~~~~~~~--~~~~~~~~~~~--~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~----~~p~lIeV~~~~ 452 (983)
++......... .........+. +++||.++|++||+++++|++.+||+++|+++++. ++|+||||.+++
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~~~~gp~liev~v~~ 568 (569)
T PRK08327 492 VKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVEDPEELKGALRRALAAVRKGRRSAVLDVIVDR 568 (569)
T ss_pred chhHHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEeCCHHHHHHHHHHHHHHHhcCCCcEEEEEEccC
Confidence 87542110000 00001111221 56899999999999999999999999999999875 789999999975
|
|
| >TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-51 Score=451.03 Aligned_cols=317 Identities=20% Similarity=0.246 Sum_probs=262.7
Q ss_pred EEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCc--C-cCcccHHHHHHHHHH-HHhHhccCccccc
Q 041113 501 SLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL--E-IHKENLLDAEEQLRF-LLHFMTGAKISYF 576 (983)
Q Consensus 501 ~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~--~-~~~~~~~~~~~~l~~-~~~~l~g~~~~~~ 576 (983)
+.+++|++.|+.++.+++ ..++.++|||+|++|++||||+.+. + ++.++...+...++. +.|.++| ++.+.
T Consensus 1 ~~~~lp~~~p~~~a~~~~----~~~~~~lV~v~~~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~g-~~~~~ 75 (324)
T TIGR01928 1 YHVSEPFKSPFKTSKGTL----NHRDCLIIELIDDKGNAGFGEVVAFQTPWYTHETIATVKHIIEDFFEPNINK-EFEHP 75 (324)
T ss_pred CeecccCcCCEEcCCeeE----ecCcEEEEEEEECCCCeEEEeccccCCCCcCcccHHHHHHHHHHHHHHHhcC-CCCCH
Confidence 357899999999988764 3489999999999999999999864 2 345666555555554 6788998 77665
Q ss_pred ccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCCCH
Q 041113 577 LPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSP 656 (983)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~~ 656 (983)
..++.. +... ...+++++||||||||++||..|+|||+||||.+ ++|++|+++ +..++
T Consensus 76 ~~~~~~-----~~~~------~~~~~a~said~AlwDl~gk~~g~Pl~~llGg~~----------~~i~~y~~~-~~~~~ 133 (324)
T TIGR01928 76 SEALEL-----VRSL------KGTPMAKAGLEMALWDMYHKLPSFSLAYGQGKLR----------DKAPAGAVS-GLAND 133 (324)
T ss_pred HHHHHH-----HHHc------cCCcHHHHHHHHHHHHHHHhhhCCcHHHHhCCCC----------CeEEEeEEc-CCCCH
Confidence 444321 1111 1245799999999999999999999999999853 789999886 34678
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCC
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV 736 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~ 736 (983)
+++.+++++++++||++||+|++ ++.|+++++++|+++ +++.||+|+|++|+.+++ ++++.|+++++.|||||+
T Consensus 134 ~~~~~~a~~~~~~Gf~~~KiKv~----~~~d~~~v~~vr~~~-~~~~l~vDaN~~~~~~~a-~~~~~l~~~~~~~iEeP~ 207 (324)
T TIGR01928 134 EQMLKQIESLKATGYKRIKLKIT----PQIMHQLVKLRRLRF-PQIPLVIDANESYDLQDF-PRLKELDRYQLLYIEEPF 207 (324)
T ss_pred HHHHHHHHHHHHcCCcEEEEEeC----CchhHHHHHHHHHhC-CCCcEEEECCCCCCHHHH-HHHHHHhhCCCcEEECCC
Confidence 99999999999999999999996 357899999999999 799999999999999986 568999999999999999
Q ss_pred C--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCC
Q 041113 737 Q--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAA 813 (983)
Q Consensus 737 ~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~ 813 (983)
+ +++++++|++++++||++||++++..+ +..+++.+ +|++|+|++++||++++++++++|+++|+++++||+
T Consensus 208 ~~~~~~~~~~l~~~~~~pia~dEs~~~~~~-----~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~ 282 (324)
T TIGR01928 208 KIDDLSMLDELAKGTITPICLDESITSLDD-----ARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGM 282 (324)
T ss_pred ChhHHHHHHHHHhhcCCCEeeCCCcCCHHH-----HHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcce
Confidence 8 688899999999999999999999764 66666554 699999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCce
Q 041113 814 FESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPIS 869 (983)
Q Consensus 814 ~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~ 869 (983)
+|++|+.++++|+|++.++. + +. ..+++..||..|++.+|++
T Consensus 283 ~es~i~~aa~~hla~~~~~~-----------~-~~--~~~~~~~~~~~d~~~~~~~ 324 (324)
T TIGR01928 283 LETGISRAFNVALASLGGND-----------Y-PG--DVSPSGYYFDQDIVAPSIR 324 (324)
T ss_pred EcccHHHHHHHHHHhCCCCC-----------C-CC--CCCCccccccccccCCCCC
Confidence 99999999999999886531 0 11 1145667888898887763
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase. |
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=487.85 Aligned_cols=382 Identities=17% Similarity=0.167 Sum_probs=293.6
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
++++|+||++.|+++|+|||||+||.|++..+... .+ ... .. +...++++.++++++
T Consensus 145 ~~~~i~~A~~~A~~~~~GPv~l~iP~d~~~~~~~~-----------------~~-~~~--~~---~~~~~~~~~~~~~~~ 201 (530)
T PRK07092 145 VPAAIARAYHIAMQPPRGPVFVSIPYDDWDQPAEP-----------------LP-ART--VS---SAVRPDPAALARLGD 201 (530)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEccHHHhhCcccc-----------------cc-cCC--CC---CCCCCCHHHHHHHHH
Confidence 67899999999999999999999999964333210 00 000 00 122456678999999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
+|.+||||+|++|.|++ .++.+++.+|||++|+||++|++++ ||+||++||++ +|.++.. .......+++
T Consensus 202 ~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~~------kg~~~~~hp~~--~G~~g~~-~~~~~~~l~~ 272 (530)
T PRK07092 202 ALDAARRPALVVGPAVDRAGAWDDAVRLAERHRAPVWVAPMSG------RCSFPEDHPLF--AGFLPAS-REKISALLDG 272 (530)
T ss_pred HHHcCCCcEEEECCCcchhhhHHHHHHHHHHHCCcEEEecCCC------cCcCCCCCccc--cCcCCcc-HHHHHHHHhh
Confidence 99999999999999987 4566799999999999999998766 79999999996 6777632 2344567789
Q ss_pred CCEEEEeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 239 (983)
||+||++|+++.+..+.+|...+.+ .++||||.|+..++. ++.++.|.+|++.++++|++.+.......+.. +
T Consensus 273 aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~-~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~-----~ 346 (530)
T PRK07092 273 HDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPGEAAW-APMGDAIVGDIRLALRDLLALLPPSARPAPPA-----R 346 (530)
T ss_pred CCEEEEECCcccccccCCccccCCCCCeEEEEeCChHHhcC-CCCCCcccCCHHHHHHHHHHhhccccccchhh-----h
Confidence 9999999998655544334333333 468999999988766 45788999999999999998775322211110 0
Q ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
.. .........++++..+++.|++.+|++++++.|+|+ +..|..+++++ ..|++|+ .+.
T Consensus 347 ~~----~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~g~----~~~~~~~~~~~-~~~~~~~------------~~~ 405 (530)
T PRK07092 347 PM----PPPAPAPGEPLSVAFVLQTLAALRPADAIVVEEAPS----TRPAMQEHLPM-RRQGSFY------------TMA 405 (530)
T ss_pred hc----cccccCCCCCcCHHHHHHHHHHhCCCCeEEEeCCCc----cHHHHHHhcCc-CCCCceE------------ccC
Confidence 00 000011245699999999999999999999999998 55566665553 4444443 234
Q ss_pred CCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 320 RGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
+|+||+ ++|+|+|+++|. +++|||++|||+|+|+++||+|+++ |++|+++||+||++|++++..+... ..
T Consensus 406 ~g~mG~--~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~--~~lp~~~vv~NN~~~~~~~~~~~~~-----~~ 476 (530)
T PRK07092 406 SGGLGY--GLPAAVGVALAQPGRRVIGLIGDGSAMYSIQALWSAAQ--LKLPVTFVILNNGRYGALRWFAPVF-----GV 476 (530)
T ss_pred CCcccc--hHHHHHHHHHhCCCCeEEEEEeCchHhhhHHHHHHHHH--hCCCcEEEEEeChHHHHHHHHHHhh-----CC
Confidence 599999 999999999999 8999999999999999999999999 9999999999999999986532110 00
Q ss_pred ccc-cccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcC
Q 041113 399 DQY-FYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESC 451 (983)
Q Consensus 399 ~~~-~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~ 451 (983)
.+. ....+++||.++|++||+++.+|++.+||.++|+++++.++|.||||.+|
T Consensus 477 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~~~~~l~~al~~a~~~~~p~liev~~d 530 (530)
T PRK07092 477 RDVPGLDLPGLDFVALARGYGCEAVRVSDAAELADALARALAADGPVLVEVEVA 530 (530)
T ss_pred CCCCCCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 111 11225799999999999999999999999999999998899999999985
|
|
| >PRK15129 L-Ala-D/L-Glu epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=437.83 Aligned_cols=286 Identities=18% Similarity=0.204 Sum_probs=243.1
Q ss_pred eEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhc-cCccc
Q 041113 496 CRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMT-GAKIS 574 (983)
Q Consensus 496 ~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~-g~~~~ 574 (983)
++|+++.+++|++.||.++.++. ..++.++|+|+ ++|.+||||+.|.+.++++...+...+..+.|.++ +.+..
T Consensus 2 ~~i~~~~~~lpl~~p~~~a~g~~----~~~~~~lv~l~-~~G~~G~GE~~p~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 76 (321)
T PRK15129 2 RTVKVYEEAWPLHTPFVIARGSR----SEARVVVVELE-EEGIKGTGECTPYPRYGESDASVMAQIMSVVPQLEKGLTRE 76 (321)
T ss_pred ceEEEEEEEeeccCCEEccCceE----EeeeEEEEEEE-eCCeEEEEeeCCcCCCCCCHHHHHHHHHHHHHHHhCCCCHH
Confidence 47999999999999999998865 45899999998 68999999999876556777766677777888876 32111
Q ss_pred ccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCC
Q 041113 575 YFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNK 654 (983)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~ 654 (983)
.+...+ ..+++++||||||||++||..|+|||+||||.. ++++++|+++. ..
T Consensus 77 ------------~~~~~~------~~~~a~~aid~AlwDl~gk~~~~pl~~llGg~~---------~~~i~~~~~~~-~~ 128 (321)
T PRK15129 77 ------------ALQKLL------PAGAARNAVDCALWDLAARQQQQSLAQLIGITL---------PETVTTAQTVV-IG 128 (321)
T ss_pred ------------HHHhhc------cChHHHHHHHHHHHHHHHHHcCCcHHHHcCCCC---------CCceeEEEEec-CC
Confidence 111111 136799999999999999999999999999975 46799988873 46
Q ss_pred CHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeec
Q 041113 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEE 734 (983)
Q Consensus 655 ~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEe 734 (983)
+++++.+++++++++||++||+|+|. +.|+++|+++|+++ +++.||+|||++||.++|+++++.|+++++.||||
T Consensus 129 ~~~~~~~~~~~~~~~G~~~~KlKv~~----~~d~~~v~avr~~~-~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i~~iEq 203 (321)
T PRK15129 129 TPEQMANSASALWQAGAKLLKVKLDN----HLISERMVAIRSAV-PDATLIVDANESWRAEGLAARCQLLADLGVAMLEQ 203 (321)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC----chHHHHHHHHHHhC-CCCeEEEECCCCCCHHHHHHHHHHHHhcCceEEEC
Confidence 88999999999999999999999963 46899999999999 58999999999999999999999999999999999
Q ss_pred CCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCC
Q 041113 735 PVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSA 812 (983)
Q Consensus 735 P~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~ 812 (983)
|++ +.+++++++ +++||++|||+++..| +..+. ..+|++|+|++++||++++++++++|+++|+++++|+
T Consensus 204 P~~~~~~~~l~~~~--~~~pia~dEs~~~~~d-----~~~~~-~~~d~v~~k~~~~GGi~~a~~i~~~a~~~gi~~~~g~ 275 (321)
T PRK15129 204 PLPAQDDAALENFI--HPLPICADESCHTRSS-----LKALK-GRYEMVNIKLDKTGGLTEALALATEARAQGFALMLGC 275 (321)
T ss_pred CCCCCcHHHHHHhc--cCCCEecCCCCCCHHH-----HHHHH-hhCCEEEeCchhhCCHHHHHHHHHHHHHcCCcEEEec
Confidence 998 444555443 5799999999999764 44443 4579999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHH
Q 041113 813 AFESGLGLSAYIIFS 827 (983)
Q Consensus 813 ~~es~ig~~a~~~la 827 (983)
|+||+++.++++|++
T Consensus 276 ~~es~i~~~a~~~l~ 290 (321)
T PRK15129 276 MLCTSRAISAALPLV 290 (321)
T ss_pred chHHHHHHHHHHHHh
Confidence 999999999999994
|
|
| >PRK15440 L-rhamnonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=444.40 Aligned_cols=315 Identities=17% Similarity=0.139 Sum_probs=238.1
Q ss_pred eeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCcccccccccccCchhhhhhhcCCCCCcchhhH
Q 041113 524 CREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSV 603 (983)
Q Consensus 524 ~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 603 (983)
.++.++|||+|++|++||||+.+.. .. .....+.+.|.|+|+++.+++.++..++.. .......+....|
T Consensus 55 ~~~~vlVrI~td~G~~G~Ge~~~~~----~~--~~~v~~~l~p~LiG~dp~~~e~l~~~m~~~----~~~~g~~g~~~~A 124 (394)
T PRK15440 55 VLGTLVVEVEAENGQVGFAVSTAGE----MG--AFIVEKHLNRFIEGKCVSDIELIWDQMLNA----TLYYGRKGLVMNT 124 (394)
T ss_pred ccceEEEEEEECCCCEEEEeCCCcH----HH--HHHHHHHHHHHcCCCChhhHHHHHHHHHhh----ccccCCccHhhhH
Confidence 3678999999999999999975321 11 122234689999999999877665433211 0001122334569
Q ss_pred HHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC--
Q 041113 604 RCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR-- 681 (983)
Q Consensus 604 ~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~-- 681 (983)
++|||+|||||+||.+|+|||+||||.. +++|++|++. ..++ . + .++||++||+|++..
T Consensus 125 ~saIDiALwDl~gK~~g~Pv~~LLGG~~---------r~~v~~y~~~---~~~~-~---a---~~~Gf~~~Kik~~~g~~ 185 (394)
T PRK15440 125 ISCVDLALWDLLGKVRGLPVYKLLGGAV---------RDELQFYATG---ARPD-L---A---KEMGFIGGKMPLHHGPA 185 (394)
T ss_pred HHHHHHHHHHHhhhHcCCcHHHHcCCCC---------CCeeEEEecC---CChH-H---H---HhCCCCEEEEcCCcCcc
Confidence 9999999999999999999999999975 5789998753 2232 1 1 257999999999531
Q ss_pred ---CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcC--CcEE
Q 041113 682 ---ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESG--LPVA 754 (983)
Q Consensus 682 ---~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~--ipIa 754 (983)
.++++|+++|+++|+++|+++.||+|+|++||+++|++++++|+++++.|||||++ |++++++|+++++ +||+
T Consensus 186 ~g~~~~~~di~~v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l~wiEEPl~~~d~~~~~~L~~~~~~~i~ia 265 (394)
T PRK15440 186 DGDAGLRKNAAMVADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGLKWIEECLPPDDYWGYRELKRNAPAGMMVT 265 (394)
T ss_pred cchHHHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCcceeCCCCcccHHHHHHHHHhCCCCCcee
Confidence 13588999999999999999999999999999999999999999999999999998 7889999999866 8899
Q ss_pred eCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhh
Q 041113 755 LDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQ 833 (983)
Q Consensus 755 ~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~ 833 (983)
+||+++++.+ ++.+++.+ +|++|+|++++||||+++|++++|+++|++++ +|. +.++++|++++.+|+
T Consensus 266 ~gE~~~~~~~-----~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~-pH~-----~~~~~~hl~aa~~n~ 334 (394)
T PRK15440 266 SGEHEATLQG-----FRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVV-PHG-----SSVYSHHFVITRTNS 334 (394)
T ss_pred cCCCccCHHH-----HHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeec-ccC-----HHHHHHHHHhhCcCc
Confidence 9999998764 66666655 79999999999999999999999999999965 553 246889999999974
Q ss_pred hhhhhhhccccC-CCCCccCccc-hhcccccCCCCCceee----ccC--CCCeeeEEecchhhhh
Q 041113 834 NAYLCKVMNREL-CPPVAQGLGT-YQWLKEDVTTDPISIC----HNS--CRGFVEASVAKATHIL 890 (983)
Q Consensus 834 ~~~~~~~~~~~~-~~~~~~g~~~-~~~~~~d~~~~p~~~~----~~P--~~pGlGv~~d~a~~~~ 890 (983)
.+ .++.. .+. .+. ..++..+++.+ +.++ .+| ++||||+++| ++.+
T Consensus 335 ~~-----~E~~~~~~~----~~~~~~~~~~~~~~~-~~~~~G~l~vp~~~~PGlGveld--~~~~ 387 (394)
T PRK15440 335 PF-----SEFLMMSPD----ADTVVPQFDPILLDE-PVPVNGRIHKSVLDKPGFGVELN--RDCN 387 (394)
T ss_pred ee-----EEecccCcc----ccccccchhhhhcCC-CeeeCCEEECCCCCCCccCcccC--HHHH
Confidence 21 11100 000 000 12223334333 3333 399 9999999999 5554
|
|
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=433.79 Aligned_cols=300 Identities=24% Similarity=0.297 Sum_probs=259.5
Q ss_pred EEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCc-CcccHHHHHHHHHHHHhHhccCcccc
Q 041113 497 RMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEI-HKENLLDAEEQLRFLLHFMTGAKISY 575 (983)
Q Consensus 497 ~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~-~~~~~~~~~~~l~~~~~~l~g~~~~~ 575 (983)
.|+++.+++|++.|+.++.++. ..++.++|||+|+ |++||||+.|.++ ++++...+...++.+.|.++|+++.
T Consensus 1 ~i~~~~~~~p~~~p~~~~~~~~----~~~~~~~v~v~t~-G~~G~GE~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~- 74 (316)
T cd03319 1 KISLRPERLPLKRPFTIARGSR----TEAENVIVEIELD-GITGYGEAAPTPRVTGETVESVLAALKSVRPALIGGDPR- 74 (316)
T ss_pred CeEEEEEEeeccccEEeeCceE----EeeeEEEEEEEEC-CEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHhcCCCch-
Confidence 3788899999999999998765 3488999999999 9999999988754 4555555666677789999999887
Q ss_pred cccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCCC
Q 041113 576 FLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKS 655 (983)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~ 655 (983)
+..++..+ .... ...+++++|||+||||++||.+|+|||+||||.. +.++++|+++. ..+
T Consensus 75 ~~~~~~~l-----~~~~-----~~~~~a~~aid~AlwDl~gk~~g~pv~~ll~g~~---------~~~~~~~~~~~-~~~ 134 (316)
T cd03319 75 LEKLLEAL-----QELL-----PGNGAARAAVDIALWDLEAKLLGLPLYQLWGGGA---------PRPLETDYTIS-IDT 134 (316)
T ss_pred HHHHHHHH-----HHhc-----cCChHHHHHHHHHHHHHHHHHcCCcHHHHcCCCC---------CCCceeEEEEe-CCC
Confidence 65544321 1111 1146799999999999999999999999976655 46788887764 467
Q ss_pred HHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecC
Q 041113 656 PVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEP 735 (983)
Q Consensus 656 ~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP 735 (983)
++++.+.+++++++||++||+|+|. +++.|+++|+++|+++| ++.|++|+|++|+.++|+++++.|+++++.|||||
T Consensus 135 ~~~~~~~~~~~~~~Gf~~iKik~g~--~~~~d~~~v~~lr~~~g-~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iEeP 211 (316)
T cd03319 135 PEAMAAAAKKAAKRGFPLLKIKLGG--DLEDDIERIRAIREAAP-DARLRVDANQGWTPEEAVELLRELAELGVELIEQP 211 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCC--ChhhHHHHHHHHHHhCC-CCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECC
Confidence 8999999999999999999999986 67899999999999999 99999999999999999999999999999999999
Q ss_pred CC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCC
Q 041113 736 VQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSA 812 (983)
Q Consensus 736 ~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~ 812 (983)
++ +++++++|++.+++||++||++.+..+ ++.+++ .++|++|+|++++||++++++++++|+++|+++++|+
T Consensus 212 ~~~~d~~~~~~L~~~~~ipIa~~E~~~~~~~-----~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~ 286 (316)
T cd03319 212 VPAGDDDGLAYLRDKSPLPIMADESCFSAAD-----AARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGC 286 (316)
T ss_pred CCCCCHHHHHHHHhcCCCCEEEeCCCCCHHH-----HHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 98 788999999999999999999998753 666665 4579999999999999999999999999999999998
Q ss_pred CCchHHHHHHHHHHHhhc
Q 041113 813 AFESGLGLSAYIIFSSYL 830 (983)
Q Consensus 813 ~~es~ig~~a~~~laa~~ 830 (983)
+++++|++++++|+++++
T Consensus 287 ~~~~~i~~~a~~hl~a~~ 304 (316)
T cd03319 287 MVESSLSIAAAAHLAAAK 304 (316)
T ss_pred chhhHHHHHHHHHHHhhc
Confidence 899999999999999985
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-48 Score=416.80 Aligned_cols=254 Identities=28% Similarity=0.397 Sum_probs=232.7
Q ss_pred EEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCcccccc
Q 041113 498 MEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFL 577 (983)
Q Consensus 498 v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~~~~~~ 577 (983)
|+++.+++||+.||.++.++. ..++.++|+|+|++|.+||||+.
T Consensus 1 i~~~~~~lpl~~~~~~~~~~~----~~~~~~~v~l~~~~G~~G~GE~~-------------------------------- 44 (265)
T cd03315 1 VEAIPVRLPLKRPLKWASGTL----TTADHVLLRLHTDDGLVGWAEAT-------------------------------- 44 (265)
T ss_pred CEEEEEeecccCceEecceeE----eccceEEEEEEECCCCEEEeccH--------------------------------
Confidence 578899999999999988764 34899999999999999999986
Q ss_pred cccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCCCHH
Q 041113 578 PLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPV 657 (983)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 657 (983)
++|||+||||+.||.+|+||++|+|+.+ ++||+|+++. ..+++
T Consensus 45 --------------------------~~aid~Al~Dl~gk~~g~pv~~llG~~~----------~~i~~~~~~~-~~~~~ 87 (265)
T cd03315 45 --------------------------KAAVDMALWDLWGKRLGVPVYLLLGGYR----------DRVRVAHMLG-LGEPA 87 (265)
T ss_pred --------------------------HHHHHHHHHHHHHHHcCCcHHHHcCCCC----------CceEEEEEec-CCCHH
Confidence 3789999999999999999999999854 6799998874 35789
Q ss_pred HHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC
Q 041113 658 EVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ 737 (983)
Q Consensus 658 ~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~ 737 (983)
++.+++++++++||++||+|+|. ++++|+++|++||+++|+++.|++|+|++||.++|+++++.|+++++.|||||++
T Consensus 88 ~~~~~~~~~~~~G~~~~KiKvg~--~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP~~ 165 (265)
T cd03315 88 EVAEEARRALEAGFRTFKLKVGR--DPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVEQPLP 165 (265)
T ss_pred HHHHHHHHHHHCCCCEEEEecCC--CHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECCCC
Confidence 99999999999999999999996 6789999999999999999999999999999999999999999999999999998
Q ss_pred --ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC
Q 041113 738 --NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF 814 (983)
Q Consensus 738 --~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~ 814 (983)
+++++++|++++++||++||++.+..+ +..+++ ..+|++++|++++||++++++++++|+++|+++++|+++
T Consensus 166 ~~d~~~~~~l~~~~~ipia~dE~~~~~~~-----~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~ 240 (265)
T cd03315 166 ADDLEGRAALARATDTPIMADESAFTPHD-----AFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMI 240 (265)
T ss_pred cccHHHHHHHHhhCCCCEEECCCCCCHHH-----HHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCcc
Confidence 688999999999999999999998753 555554 457999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhch
Q 041113 815 ESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 815 es~ig~~a~~~laa~~~ 831 (983)
+|+|++++++|++++++
T Consensus 241 ~s~i~~~a~~hlaa~~~ 257 (265)
T cd03315 241 ESGLGTLANAHLAAALR 257 (265)
T ss_pred chHHHHHHHHHHHHhCC
Confidence 99999999999999987
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-49 Score=464.25 Aligned_cols=365 Identities=12% Similarity=0.069 Sum_probs=264.5
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|+||++.|.++|+|||||+||.|.+....... ..+.... +.+.++++.+++++
T Consensus 138 ~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv~~~~~~~~---------------~~~~~~~-------~~~~~~~~~i~~~~ 195 (518)
T PRK12474 138 AVDSDVARAVQAAQSAPGGIATLIMPADVAWNEAAYA---------------AQPLRGI-------GPAPVAAETVERIA 195 (518)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEechhhhcccccCC---------------cCCCCCC-------CCCCCCHHHHHHHH
Confidence 3788999999999999999999999999643221000 0000000 01235667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEecccc-----Cccchhhhhhhhh-hccccccccchhhhccCc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILS-----GLRLRKLLASFLE-TEQNILFLDHLDHALLSE 153 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~s-----g~~~~~~kg~~~~-~hp~~~~~g~~g~~~~~~ 153 (983)
++|++||||+|++|+|+. .++.+++++|||++|+||++|..+ | ||+||+ +||++ . ..
T Consensus 196 ~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~~t~~~~~~~~g------kg~~~~~~~~~~--~--------~~ 259 (518)
T PRK12474 196 ALLRNGKKSALLLRGSALRGAPLEAAGRIQAKTGVRLYCDTFAPRIERG------AGRVPIERIPYF--H--------EQ 259 (518)
T ss_pred HHHHcCCCcEEEECCccchhhHHHHHHHHHHHHCCCEEEecCcccccCC------CCCCCCcccccc--h--------HH
Confidence 999999999999999986 456789999999999999976432 5 899995 55663 1 12
Q ss_pred cccccCCCCEEEEeCCccccHH-HH-H-HHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCCh
Q 041113 154 SVKDWIQFDVIIQIGSRITSKR-IS-Q-MIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSS 229 (983)
Q Consensus 154 ~~~~~~~aDlvl~iG~~~~~~~-~~-~-~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~ 229 (983)
....+++|||||++|++++... +. . +...+. +.++++++.. .+|++.++++|.+.+....
T Consensus 260 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------~~d~~~~l~~L~~~l~~~~-- 323 (518)
T PRK12474 260 ITAFLKDVEQLVLVGAKPPVSFFAYPGKPSWGAPPGCEIVYLAQP--------------DEDLAQALQDLADAVDAPA-- 323 (518)
T ss_pred HHHHHhhCCEEEEECCCCCccccccCCCccccCCCCCEEEEECCC--------------CcCHHHHHHHHHHhccccc--
Confidence 2356789999999999963111 00 0 111111 2346666531 1699999999988664311
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCC
Q 041113 230 KWCSFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEF 309 (983)
Q Consensus 230 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 309 (983)
.+.... ...... ....++++.+++++|++.++++++++.|.|+ +..|...+++. .+|++|+
T Consensus 324 ~~~~~~-------~~~~~~--~~~~~i~~~~~~~~l~~~l~~d~iv~~d~g~----~~~~~~~~~~~-~~p~~~~----- 384 (518)
T PRK12474 324 EPAART-------PLALPA--LPKGALNSLGVAQLIAHRTPDQAIYADEALT----SGLFFDMSYDR-ARPHTHL----- 384 (518)
T ss_pred cccccc-------cccccC--CCCCCcCHHHHHHHHHHHCCCCeEEEECCCc----CHHHHHHhhcc-cCCCCEE-----
Confidence 111100 000000 1235699999999999999999999999998 56666666553 4454443
Q ss_pred CCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCC
Q 041113 310 PHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLP 388 (983)
Q Consensus 310 ~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~ 388 (983)
.+++|+||| |+|+|||+++|+ +++||||+|||||+|++|||+|++| |++|+++||+||++|+++++..
T Consensus 385 -------~~~~gsmG~--glpaAiGa~lA~p~r~vv~i~GDG~f~m~~qEL~Ta~r--~~lpv~iiV~NN~~y~~i~~~~ 453 (518)
T PRK12474 385 -------PLTGGSIGQ--GLPLAAGAAVAAPDRKVVCPQGDGGAAYTMQALWTMAR--ENLDVTVVIFANRSYAILNGEL 453 (518)
T ss_pred -------ccCCCccCc--cHHHHHHHHHHCCCCcEEEEEcCchhcchHHHHHHHHH--HCCCcEEEEEcCCcchHHHHHH
Confidence 234499999 999999999999 9999999999999999999999999 9999999999999999987532
Q ss_pred CCCCCCccccc---cccc-cCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEc
Q 041113 389 IADRTEPRILD---QYFY-TTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVES 450 (983)
Q Consensus 389 ~~~~~~~~~~~---~~~~-~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~ 450 (983)
+.... ..... .... ..+++||.++|++||+++.+|++.+||.++|+++++.++|+||||.+
T Consensus 454 ~~~~~-~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~~~~eL~~al~~a~~~~~p~liev~~ 518 (518)
T PRK12474 454 QRVGA-QGAGRNALSMLDLHNPELNWMKIAEGLGVEASRATTAEEFSAQYAAAMAQRGPRLIEAMI 518 (518)
T ss_pred HhhcC-CCCCccccccccCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 11000 00000 0111 12458999999999999999999999999999999999999999975
|
|
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=461.87 Aligned_cols=371 Identities=15% Similarity=0.078 Sum_probs=264.2
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.|+||++.|+++|||||||+||.|.+....... ..+.. . . +...++++.+++++
T Consensus 134 ~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~---------------~~~~~---~-~---~~~~~~~~~v~~~~ 191 (514)
T PRK07586 134 DVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPP---------------APPPP---A-P---APAAVDPAAVEAAA 191 (514)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccc---------------cccCC---C-C---CCCCCCHHHHHHHH
Confidence 3688999999999999999999999999643222100 00000 0 0 12245678899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEecccc-----CccchhhhhhhhhhccccccccchhhhccCcc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILS-----GLRLRKLLASFLETEQNILFLDHLDHALLSES 154 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~s-----g~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~ 154 (983)
++|++||||+||+|+|++ .++.+++.+|||++|+||+++..+ | ||+||++|+.+ .+ +.+
T Consensus 192 ~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~g------kg~~~~~~~~~--~~-------~~~ 256 (514)
T PRK07586 192 AALRSGEPTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERG------AGRPAVERLPY--FA-------EQA 256 (514)
T ss_pred HHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccC------CCCCCcccccc--hH-------HHH
Confidence 999999999999999987 456789999999999999987532 4 89999888764 11 233
Q ss_pred ccccCCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHH
Q 041113 155 VKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSF 234 (983)
Q Consensus 155 ~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~ 234 (983)
+..+++|||||++|+++... ...+ ...+..+++.+.+...+. ...+|++.++++|.+.+....... .
T Consensus 257 ~~~~~~aDlvl~vG~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~-------~~~~d~~~~l~~L~~~l~~~~~~~---~ 323 (514)
T PRK07586 257 LAQLAGVRHLVLVGAKAPVA-FFAY--PGKPSRLVPEGCEVHTLA-------GPGEDAAAALEALADALGAKPAAP---P 323 (514)
T ss_pred HHHHhcCCEEEEECCCCccc-cccc--CCCccccCCCCceEEEEC-------CCcccHHHHHHHHHHhhcccccch---h
Confidence 45678999999999996211 1101 001111111111110000 013799999999988764321110 1
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcce
Q 041113 235 LRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWI 314 (983)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 314 (983)
.... ......+.++++.++++.|++.+|++++++.|+|+ +.+|...++.. ..|++|+
T Consensus 324 ~~~~--------~~~~~~~~~i~~~~~~~~l~~~l~~~~ivv~d~g~----~~~~~~~~~~~-~~~~~~~---------- 380 (514)
T PRK07586 324 LAAP--------ARPPLPTGALTPEAIAQVIAALLPENAIVVDESIT----SGRGFFPATAG-AAPHDWL---------- 380 (514)
T ss_pred hhhc--------cccCCCCCCcCHHHHHHHHHHhCCCCeEEEeCCCc----CHHHHHHhccc-cCCCCEE----------
Confidence 1000 00111245699999999999999999999999998 56666655553 4444443
Q ss_pred eEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCC
Q 041113 315 RVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRT 393 (983)
Q Consensus 315 ~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~ 393 (983)
.+. .|+||| |+|+|||+++|. +++|||++|||||+|++|||+|++| |++|+++||+||++|++++..+.....
T Consensus 381 -~~~-~g~mG~--~lpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~EL~Ta~~--~~lpv~ivV~NN~~y~~~~~~~~~~~~ 454 (514)
T PRK07586 381 -TLT-GGAIGQ--GLPLATGAAVACPDRKVLALQGDGSAMYTIQALWTQAR--ENLDVTTVIFANRAYAILRGELARVGA 454 (514)
T ss_pred -ccC-Cccccc--HHHHHHHHHHhCCCCeEEEEEechHHHhHHHHHHHHHH--cCCCCEEEEEeCchhHHHHHHHHHhcC
Confidence 233 499999 999999999999 9999999999999999999999999 999999999999999999763210000
Q ss_pred Ccc-cc-ccccc-cCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEc
Q 041113 394 EPR-IL-DQYFY-TTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVES 450 (983)
Q Consensus 394 ~~~-~~-~~~~~-~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~ 450 (983)
... .+ ..+.. ..+++||.++|++||+++++|++.+||+++|+++++.++|+||||.+
T Consensus 455 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~el~~al~~a~~~~~p~liev~~ 514 (514)
T PRK07586 455 GNPGPRALDMLDLDDPDLDWVALAEGMGVPARRVTTAEEFADALAAALAEPGPHLIEAVV 514 (514)
T ss_pred CCCCccccccccCCCCCCCHHHHHHHCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 000 00 00111 12468999999999999999999999999999999999999999975
|
|
| >cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-47 Score=409.93 Aligned_cols=250 Identities=30% Similarity=0.451 Sum_probs=221.7
Q ss_pred EEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCccccccc
Q 041113 499 EYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLP 578 (983)
Q Consensus 499 ~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~~~~~~~ 578 (983)
+++.+++|++.||.++.+++ ..++.++|+|+|++|.+||||+.|.+
T Consensus 2 ~~~~~~lpl~~~~~~~~~~~----~~~~~~~v~l~~~~G~~G~GE~~p~~------------------------------ 47 (263)
T cd03320 2 RLYPYSLPLSRPLGTSRGRL----TRRRGLLLRLEDLTGPVGWGEIAPLP------------------------------ 47 (263)
T ss_pred ccEEEEeecCCcccccCceE----EEEeEEEEEEecCCCCeeEEeccchH------------------------------
Confidence 46789999999999998765 44899999999999999999998642
Q ss_pred ccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCCCHHH
Q 041113 579 LLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVE 658 (983)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 658 (983)
+++||||||||+.||..| ||.. +.+|++|+++. ..++ +
T Consensus 48 ------------------------a~aaid~AlwDl~gk~~g-------gg~~---------~~~v~~~~~~~-~~~~-~ 85 (263)
T cd03320 48 ------------------------LAFGIESALANLEALLVG-------FTRP---------RNRIPVNALLP-AGDA-A 85 (263)
T ss_pred ------------------------HHHHHHHHHhcccccccC-------CCCC---------ccCcceeEEec-CCCH-H
Confidence 458999999999999999 6654 46799998874 3455 5
Q ss_pred HHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC-
Q 041113 659 VASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ- 737 (983)
Q Consensus 659 ~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~- 737 (983)
..+++++++++||++||+|+|.. ++++|+++|+++|+.+|+++.|++|+|++|+.++|+++++.|+++++.|||||++
T Consensus 86 ~~~~~~~~~~~Gf~~~KiKvg~~-~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i~~iEqP~~~ 164 (263)
T cd03320 86 ALGEAKAAYGGGYRTVKLKVGAT-SFEEDLARLRALREALPADAKLRLDANGGWSLEEALAFLEALAAGRIEYIEQPLPP 164 (263)
T ss_pred HHHHHHHHHhCCCCEEEEEECCC-ChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhhcccCCceEECCCCh
Confidence 66778888899999999999873 6789999999999999999999999999999999999999999999999999998
Q ss_pred -ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCc
Q 041113 738 -NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFE 815 (983)
Q Consensus 738 -~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~e 815 (983)
+++.+++++ +++||++||+++++.+ +..+++. .+|++|+|++++||++++++++++|+++|+++++|+++|
T Consensus 165 ~d~~~~~~l~--~~~PIa~dEs~~~~~~-----~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~e 237 (263)
T cd03320 165 DDLAELRRLA--AGVPIALDESLRRLDD-----PLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALE 237 (263)
T ss_pred HHHHHHHHhh--cCCCeeeCCccccccC-----HHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchh
Confidence 556666666 7899999999999875 5555554 479999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhchh
Q 041113 816 SGLGLSAYIIFSSYLEL 832 (983)
Q Consensus 816 s~ig~~a~~~laa~~~~ 832 (983)
++|++++++|+++++++
T Consensus 238 s~ig~aa~~hlaa~~~~ 254 (263)
T cd03320 238 SSIGLGALAHLAAALPP 254 (263)
T ss_pred hHHHHHHHHHHHHhCCC
Confidence 99999999999999884
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=411.93 Aligned_cols=278 Identities=28% Similarity=0.412 Sum_probs=234.5
Q ss_pred EEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHHHHHhHhccCcccccccc
Q 041113 501 SLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLRFLLHFMTGAKISYFLPL 579 (983)
Q Consensus 501 ~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~~~~~~l~g~~~~~~~~~ 579 (983)
+.+++||+.||.++.+++ ..++.++|+|+ ++|++|||||.|.+ +++|+..++...++.+.+.+.++++..+.
T Consensus 1 ~~~~lpl~~p~~~a~g~~----~~~~~~iv~l~-~~G~~G~GE~~p~~~~~~et~~~~~~~l~~l~~~l~~~~~~~~~-- 73 (307)
T TIGR01927 1 YRYQMPFDAPVVTRHGLL----ARREGLIVRLT-DEGRTGWGEIAPLPGFGTETLAEALDFCRALIEEITRGDIEAID-- 73 (307)
T ss_pred CcEeccCCCCcCcCceeE----EeeeEEEEEEE-ECCcEEEEEeecCCCCCcccHHHHHHHHHHHHHHhcccchhhcc--
Confidence 357899999999999865 45999999999 56999999999886 56888888877787888888876654221
Q ss_pred cccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCCCHHHH
Q 041113 580 LKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEV 659 (983)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 659 (983)
...+++++|||+||||+.||. +.|. . ..++. ..+ ...+++++
T Consensus 74 ------------------~~~~~~~~aie~Al~Dl~~k~-~~~~------~-----------~~~~~-~~l-~~~~~~~~ 115 (307)
T TIGR01927 74 ------------------DQLPSVAFGFESALIELESGD-ELPP------A-----------SNYYV-ALL-PAGDPALL 115 (307)
T ss_pred ------------------ccCcHHHHHHHHHHHHHhcCC-CCCc------c-----------cccce-eec-cCCCHHHH
Confidence 113567999999999999997 1111 1 11222 222 24567887
Q ss_pred HHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhccc---CCCceeecCC
Q 041113 660 ASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD---CDLQYIEEPV 736 (983)
Q Consensus 660 ~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~---~~i~~iEeP~ 736 (983)
.+++.+ ++||++||+|+|. .++++|+++|++||+++|+++.||+|+|++||.++|+++++.|++ +++.|||||+
T Consensus 116 ~~~~~~--~~Gf~~~KiKvG~-~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i~~iEqP~ 192 (307)
T TIGR01927 116 LLRSAK--AEGFRTFKWKVGV-GELAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDPNLRGRIAFLEEPL 192 (307)
T ss_pred HHHHHH--hCCCCEEEEEeCC-CChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhcccccCCCceEEeCCC
Confidence 777765 7899999999986 368999999999999999999999999999999999999999998 9999999999
Q ss_pred CChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCc
Q 041113 737 QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFE 815 (983)
Q Consensus 737 ~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~e 815 (983)
+..+++++|++++++||++|||+.+..| +..+++.+ +|++|+|++++||++++++++++|+++|+++++||++|
T Consensus 193 ~~~~~~~~l~~~~~~Pia~dEs~~~~~d-----~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~e 267 (307)
T TIGR01927 193 PDADEMSAFSEATGTAIALDESLWELPQ-----LADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFE 267 (307)
T ss_pred CCHHHHHHHHHhCCCCEEeCCCcCChHH-----HHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccc
Confidence 9558999999999999999999999764 66666655 59999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhch
Q 041113 816 SGLGLSAYIIFSSYLE 831 (983)
Q Consensus 816 s~ig~~a~~~laa~~~ 831 (983)
|+|++++++|++++++
T Consensus 268 s~i~~aa~~hlaa~~~ 283 (307)
T TIGR01927 268 SSIALGQLARLAAKLS 283 (307)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999999876
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error. |
| >PRK02714 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=415.40 Aligned_cols=297 Identities=25% Similarity=0.406 Sum_probs=243.8
Q ss_pred EEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHHHHHhHhccCcccc
Q 041113 497 RMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLRFLLHFMTGAKISY 575 (983)
Q Consensus 497 ~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~~~~~~l~g~~~~~ 575 (983)
+++++.+++||+.||.++.+++ ..++.++|+|+|++|++||||++|.+ +++|+..++...++.+.|.+.++++..
T Consensus 4 ~~~~~~~~lpl~~p~~~a~g~~----~~~~~~iV~l~~~~G~~G~GE~~p~p~~~~et~~~~~~~l~~l~~~l~~~~~~~ 79 (320)
T PRK02714 4 RFAFRPYQRPFRQPLQTAHGLW----RIREGIILRLTDETGKIGWGEIAPLPWFGSETLEEALAFCQQLPGEITPEQIFS 79 (320)
T ss_pred EEEEEEEEEecCCceEeccceE----EEeEEEEEEEEeCCCCeEEEEecCCCCCCcccHHHHHHHHHhccccCCHHHHHh
Confidence 5779999999999999999865 45999999999999999999999876 567887777666655555544322110
Q ss_pred cccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHH-HHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCC
Q 041113 576 FLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILN-AIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNK 654 (983)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwD-l~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~ 654 (983)
+ . ...+++++|||+| || +.+|..+. .. ..++++..+ .
T Consensus 80 ---~---------~--------~~~~~~~~aie~A-~d~~~~~~~~~--------~~----------~~~~~~~~i---~ 117 (320)
T PRK02714 80 ---I---------P--------DALPACQFGFESA-LENESGSRSNV--------TL----------NPLSYSALL---P 117 (320)
T ss_pred ---h---------h--------hcCCHHHHHHHHH-HHHHhcccccC--------Cc----------CCCceeeec---C
Confidence 0 0 1134779999999 65 54443211 11 235666655 3
Q ss_pred CHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhccc---CCCce
Q 041113 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD---CDLQY 731 (983)
Q Consensus 655 ~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~---~~i~~ 731 (983)
+++++.+++++++++||++||+|+|. .++++|+++|+++|+++|+++.|++|+|++|+.++|+++++.|++ +++.|
T Consensus 118 ~~~~~~~~a~~~~~~G~~~~KvKvG~-~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~l~~~~i~~ 196 (320)
T PRK02714 118 AGEAALQQWQTLWQQGYRTFKWKIGV-DPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQLCDRRLSGKIEF 196 (320)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEECC-CChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCCccE
Confidence 45788899999999999999999997 357899999999999999999999999999999999999999987 79999
Q ss_pred eecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcE
Q 041113 732 IEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMA 808 (983)
Q Consensus 732 iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~ 808 (983)
||||++ +++++++|++++++||++|||+.++.| +..+++.+ +|++|+|++++||++++ .++|+++|+++
T Consensus 197 iEqP~~~~~~~~~~~l~~~~~~Pia~DEs~~~~~d-----~~~~~~~~a~d~v~ik~~k~GGi~~~---~~~a~~~gi~~ 268 (320)
T PRK02714 197 IEQPLPPDQFDEMLQLSQDYQTPIALDESVANLAQ-----LQQCYQQGWRGIFVIKPAIAGSPSRL---RQFCQQHPLDA 268 (320)
T ss_pred EECCCCcccHHHHHHHHHhCCCCEEECCccCCHHH-----HHHHHHcCCCCEEEEcchhcCCHHHH---HHHHHHhCCCE
Confidence 999998 789999999999999999999999864 66666654 68899999999999865 46789999999
Q ss_pred EeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhccccc
Q 041113 809 VVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKED 862 (983)
Q Consensus 809 ~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d 862 (983)
++||++||+||+++++|+++++++ +..++|++++.||.++
T Consensus 269 ~~~~~~es~ig~aa~~hlaa~~~~--------------~~~~~g~~~~~~~~~~ 308 (320)
T PRK02714 269 VFSSVFETAIGRKAALALAAELSR--------------PDRALGFGVTHWFSDE 308 (320)
T ss_pred EEEechhhHHHHHHHHHHHHhCCC--------------CCCCCCCCCccccccC
Confidence 999999999999999999999873 4678999999998765
|
|
| >COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=414.08 Aligned_cols=398 Identities=16% Similarity=0.125 Sum_probs=307.2
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
.+..|+|+++.|.. .++||||.+|.|..-.+.... ..|...... . ..+....+.++.+++
T Consensus 145 A~~eIDrvi~~~~~-~~RPvYI~lP~dva~~~~~~p---------------~~Pl~~~~~-~---sd~e~~~e~i~~i~~ 204 (557)
T COG3961 145 APREIDRVIRTALK-QRRPVYIGLPADVADLPIEAP---------------LTPLDLQLK-T---SDPEALSEVIDTIAE 204 (557)
T ss_pred hHHHHHHHHHHHHH-hcCCeEEEcchHHhcCcCCCC---------------CCccccccC-C---CCHHHHHHHHHHHHH
Confidence 46789999999998 458999999998533222110 011111100 0 112334467889999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccc-cccC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESV-KDWI 159 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~-~~~~ 159 (983)
+|.++|||+||+|..+. .+..+++.+|++++++|+++++| | ||+|+|.||.| +|.|.+..+.... ..++
T Consensus 205 lI~~ak~p~ILad~~~~r~~~~~~~~~l~~~t~~p~~~~pm-G------Kg~idEs~P~y--~GvY~G~~s~~~vre~vE 275 (557)
T COG3961 205 LINKAKKPVILADALVSRFGLEKELKKLINATGFPVATLPM-G------KGVIDESHPNY--LGVYNGKLSEPEVREAVE 275 (557)
T ss_pred HHhccCCcEEecchhhhhhhhHHHHHHHHHhcCCCeEEeec-c------cccccccCCCe--eeEEecccCCHHHHHHhh
Confidence 99999999999999876 56778999999999999999999 7 99999999995 7888655444444 4569
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 239 (983)
.||+||.+|+.+++..+.+|...+++.++|+++.+...+.......+ .++.+|+.|.+.+..+....-..
T Consensus 276 ~aD~il~iG~~ltD~~Tg~Ft~~~~~~~~i~~~~~~v~I~~~~f~~l----~m~~~L~~L~~~i~~~~~~~~~~------ 345 (557)
T COG3961 276 SADLILTIGVLLTDFNTGGFTYQYKPANIIEIHPDSVKIKDAVFTNL----SMKDALQELAKKIDKRNLSAPPV------ 345 (557)
T ss_pred cCCEEEEeceEEeeccccceeeecCcccEEEeccCeeEecccccCCe----eHHHHHHHHHHHhhhcccCCCCc------
Confidence 99999999999999999999988888889999988876654433333 57899999987764432110000
Q ss_pred HHHHHHHHh--hhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEe
Q 041113 240 MMVASEISF--QICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVA 317 (983)
Q Consensus 240 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 317 (983)
+.....++ ......+++...+++.+++++.++++|++|.|. ..|+..-..+ ++..+|+ ..
T Consensus 346 -~~~~~~p~~~~~~~~~pLtq~~~w~~~~~fl~p~dviiaetGt-----S~FG~~~~~l-P~~~~~i-----------~Q 407 (557)
T COG3961 346 -AYPARTPPTPYPPANEPLTQEWLWNTVQNFLKPGDVIIAETGT-----SFFGALDIRL-PKGATFI-----------SQ 407 (557)
T ss_pred -cCCCCCCCCCCCCCCCcccHHHHHHHHHhhCCCCCEEEEcccc-----ccccceeeec-CCCCeEE-----------cc
Confidence 00000010 123456799999999999999999999999998 4455443332 3434443 45
Q ss_pred ecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcc
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPR 396 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~ 396 (983)
..||++|| ++|+++|+++|. +||||+++||||||||.||++|+.| ++++++|+|+||+||.|+|.++...
T Consensus 408 ~lWGSIG~--t~pAalGa~~A~~drR~IL~iGDGs~QlTvQEiStmiR--~gl~p~ifvlNN~GYTIEr~IHg~~----- 478 (557)
T COG3961 408 PLWGSIGY--TLPAALGAALAAPDRRVILFIGDGSLQLTVQEISTMIR--WGLKPIIFVLNNDGYTIERAIHGPT----- 478 (557)
T ss_pred cchhhccc--ccHhhhhhhhcCCCccEEEEEcCchhhhhHHHHHHHHH--cCCCcEEEEEcCCCcEEEehhcCCC-----
Confidence 88999999 999999999999 9999999999999999999999999 9999999999999999999885432
Q ss_pred ccccccccCCCCCHHHHHHHcCCc----eeeeCCHHHHHHHHHhhhc-cCCCEEEEEEcCcccchHHHHHHHHHHHH
Q 041113 397 ILDQYFYTTHNISIQNLCLAHGLN----HVQVKTKVELEEALSMSQH-LGTDRVIEVESCIDANATFHSMLRKFARQ 468 (983)
Q Consensus 397 ~~~~~~~~~~~~df~~la~a~G~~----~~~v~~~~eL~~aL~~a~~-~~~p~lIeV~~~~~~~~~~~~~~~~~~~~ 468 (983)
..|.+..+|||.++.++||+. ..++++.++|..+++.+++ .+++.+|||.++..+.++.+.++.+....
T Consensus 479 ---~~YNdI~~Wd~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~lIEv~lp~~D~P~~L~~~~~~~a~ 552 (557)
T COG3961 479 ---APYNDIQSWDYTALPEAFGAKNGEAKFRATTGEELALALDVAFANNDRIRLIEVMLPVLDAPELLIDQAKATAA 552 (557)
T ss_pred ---cCcccccccchhhhhhhcCCCCceEEEeecChHHHHHHHHHHhcCCCceEEEEEecCcccCCHHHHHHHHhhhh
Confidence 123445789999999999984 2678999999999999986 46899999999999999988887766544
|
|
| >PRK05105 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-46 Score=409.53 Aligned_cols=297 Identities=26% Similarity=0.417 Sum_probs=248.6
Q ss_pred eEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHHHHHhHhccCccc
Q 041113 496 CRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLRFLLHFMTGAKIS 574 (983)
Q Consensus 496 ~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~~~~~~l~g~~~~ 574 (983)
++|+++.+++||+.||.++.+++ ..++.++|+|+ ++|++|||||+|.+ +++|+..++...+..+.+.+.+.+..
T Consensus 2 ~~i~~~~~~lpl~~p~~~a~g~~----~~~~~viV~l~-d~G~~G~GE~~p~~~~~~et~~~~~~~l~~~~~~~~~~~~~ 76 (322)
T PRK05105 2 RSAQLYRYQIPMDAGVPLRKQRL----KTRDGLVVQLR-EGEREGWGEIAPLPGFSQETLEEAQEALLAWLNNWLAGDCD 76 (322)
T ss_pred cceEEEEEEEecCCCceecceEE----EEeeeEEEEEE-ECCcEEEEEeCCCCCCCccCHHHHHHHHHHHHHHhhcCccc
Confidence 57999999999999999999865 45999999997 88999999999876 56788877766665533333333222
Q ss_pred ccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCC
Q 041113 575 YFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNK 654 (983)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~ 654 (983)
.+ ....+++++++++|+||+.||..+.|++. .+++ +..
T Consensus 77 ~~--------------------~~~~~~a~~~i~~Al~dl~gk~~~~~~~~-----------------~~~l-----~~~ 114 (322)
T PRK05105 77 DE--------------------LSQYPSVAFGLSCALAELAGTLPQAANYR-----------------TAPL-----CYG 114 (322)
T ss_pred cc--------------------cccCcHHHHHHHHHHHHhcCCCCCCCCcc-----------------eeee-----ecC
Confidence 10 01246788999999999999988888752 1222 125
Q ss_pred CHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhccc---CCCce
Q 041113 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD---CDLQY 731 (983)
Q Consensus 655 ~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~---~~i~~ 731 (983)
++++++++++++ +||++||+|+|. .++++|+++|++||+++ +++.||+|||++||+++|+++++.|++ +++.|
T Consensus 115 ~~~~~~~~a~~~--~Gf~~~KvKvG~-~~~~~d~~~i~~vr~~~-~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i~~ 190 (322)
T PRK05105 115 DPDELILKLADM--PGEKVAKVKVGL-YEAVRDGMLVNLLLEAI-PDLKLRLDANRGWTLEKAQQFAKYVPPDYRHRIAF 190 (322)
T ss_pred CHHHHHHHHHHc--CCCCEEEEEECC-CCHHHHHHHHHHHHHhC-CCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCccE
Confidence 788899888887 899999999996 26889999999999999 799999999999999999999999999 99999
Q ss_pred eecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeC
Q 041113 732 IEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVS 811 (983)
Q Consensus 732 iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~ 811 (983)
||||+++.++++++++++++||++|||+.+.. +......+++++|+|++++||++++++++++|+++|+++++|
T Consensus 191 iEqP~~~~~~~~~l~~~~~~PIa~DEs~~~~~------~~~~~~~~~d~i~ik~~k~GGi~~a~~i~~~A~~~gi~~~~~ 264 (322)
T PRK05105 191 LEEPCKTPDDSRAFARATGIAIAWDESLREPD------FQFEAEPGVRAIVIKPTLTGSLEKCQELIEQAHALGLRAVIS 264 (322)
T ss_pred EECCCCCHHHHHHHHHhCCCCEEECCCCCchh------hhhhhcCCCCEEEECccccCCHHHHHHHHHHHHHcCCcEEEE
Confidence 99999878899999999999999999998863 223335568999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCC
Q 041113 812 AAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVT 864 (983)
Q Consensus 812 ~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~ 864 (983)
||+||+|+.++++|++++++ +...+|++++.+|.+|+.
T Consensus 265 ~~~es~i~~aa~~hla~~~~---------------~~~~~~l~t~~~~~~d~~ 302 (322)
T PRK05105 265 SSIESSLGLTQLARLAAWLT---------------PDTIPGLDTLDLMQAQLV 302 (322)
T ss_pred CchhHHHHHHHHHHHHHhcC---------------CCCCCCCChHHHHhhccc
Confidence 99999999999999999974 134567889999998864
|
|
| >COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=397.82 Aligned_cols=411 Identities=34% Similarity=0.488 Sum_probs=325.5
Q ss_pred HHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCc-cc-ccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 4 TTLDSAVHWATSSPYGPVHINCPFREPLDNSPKH-WM-SSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 4 ~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~-~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
..-.++...|++..+||||||||+++|+.+.... .+ .++.+.+..|.-...+.... .. .+.+.+ .+
T Consensus 151 ~~~~~~~~~a~~~~~GpVHiN~PfrePL~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~-~~ 218 (566)
T COG1165 151 TIASAAAQQARTPHAGPVHINVPFREPLVPDLEPEGAGTPWGRPLGHWWFYTGPWTVD----------QG-PDLLSE-WF 218 (566)
T ss_pred HHHHHHHHhccCCCCCceEecCCCCccCCCCCCccccccccccccCchhhcCCceeee----------cc-cccccc-hh
Confidence 4456778888889999999999999999887432 01 11111111121111111100 00 112222 33
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQF 161 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~a 161 (983)
. -.+||++||+|..... +.+.+.++|+.+|+|+++++.|++|. ++..|+.+......+.-...
T Consensus 219 ~-~~~~rgviv~G~~~~~-e~~~i~~~a~~lg~PilaDplS~lr~---------------~i~~yD~~L~~~~~~~~L~~ 281 (566)
T COG1165 219 F-WRQKRGVIVAGRMSAQ-EGKGILALANTLGWPILADPLSPLRN---------------YIPCYDLWLANPKAAEKLRP 281 (566)
T ss_pred h-hcccCceEEEecCchh-hhHHHHHHHHHhCCceecccccccCC---------------CcccchhhhcCchhhhhcCc
Confidence 3 3579999999986543 34569999999999999999998641 13445544433322222344
Q ss_pred CEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHHHH
Q 041113 162 DVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMM 241 (983)
Q Consensus 162 Dlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~~~ 241 (983)
|.||.||.++.++++..|+....+.+++.||..+.+.++.+..+..+.+++..+++.+.... ..+..|.++|....+.
T Consensus 282 d~VI~fG~~~~SK~l~qwl~~~~~~~~~vvd~~~~~~Dp~~~~~~~~~~~v~~~~~~~~~~~--~~~~~Wl~~~~~~~~~ 359 (566)
T COG1165 282 DIVIQFGSPPTSKRLLQWLADTEPIEYWVVDPGGGWLDPSHHATTRLSADVATWARSIHPAG--RIRKPWLDEWLALNEK 359 (566)
T ss_pred cEEEEeCCCcccHHHHHHHhccCCCcEEEEcCCCCcCCcccccceEEEeehhHhHHHhcccc--ccccHHHHHHHHHHHH
Confidence 99999999999999999998777678888999999999998888889999999997765432 1256899999888777
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCC
Q 041113 242 VASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRG 321 (983)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G 321 (983)
.++.......+. .++..++..+|.+.+|+++.+|++||++||+.+.|.... ..+++++|+|
T Consensus 360 ~~~~v~~~~~~~-~~~e~~~a~~l~~~lp~~~~LFvgNSmpVRdvd~~~~~~------------------~~~~v~sNRG 420 (566)
T COG1165 360 ARQAVRDQLAAE-ALTEAHLAAALADLLPPQDQLFVGNSMPVRDVDALGQLP------------------AGYRVYSNRG 420 (566)
T ss_pred HHHHHHHHhccc-CchhhHHHHHHHHhCCCCCeEEEecCchhhhHHHhccCc------------------cCceeecCCC
Confidence 666554444333 788999999999999999999999999999999987531 3456789999
Q ss_pred CCCccchHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccc
Q 041113 322 ASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQY 401 (983)
Q Consensus 322 ~mG~~g~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~ 401 (983)
+.|+||.+++|+|++.|.++|+|+++||.||+|+++.|....+ ...|++|||+||+|+|||+++|+... ...++++
T Consensus 421 A~GIDG~vSTA~Gi~~a~~~ptv~liGDLS~lhD~NgLl~~k~--~~~~ltIvv~NNnGGgIF~~Lp~~~~--~~~fe~~ 496 (566)
T COG1165 421 ASGIDGTVSTALGIARATQKPTVALIGDLSFLHDLNGLLLLKK--VPQPLTIVVVNNNGGGIFSLLPQAQS--EPVFERL 496 (566)
T ss_pred ccccchhHHHHhhhhhhcCCceEEEEechhhhhccchHhhcCC--CCCCeEEEEEeCCCceeeeeccCCCC--cchHHHh
Confidence 9999999999999999998999999999999999999998655 89999999999999999999998754 2368999
Q ss_pred cccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHHHHHHHHH
Q 041113 402 FYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQ 468 (983)
Q Consensus 402 ~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~~~~~~~~ 468 (983)
|+++++.||+.+|+.||+++.++.+.+||+++++.+....|..||||++++++....++++.+.+..
T Consensus 497 F~tPh~ldF~~la~~y~l~y~~~~s~~~l~~~~~~~~~~~g~~viEvkt~r~~~~~~~q~l~~~~~~ 563 (566)
T COG1165 497 FGTPHGLDFAHLAATYGLEYHRPQSWDELGEALDQAWRRSGTTVIEVKTDRSDGAQLHQALLAQVSH 563 (566)
T ss_pred cCCCCCCCHHHHHHHhCccccccCcHHHHHHHHhhhccCCCcEEEEEecChhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999888999999999999999999999988764
|
|
| >COG3962 Acetolactate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=385.38 Aligned_cols=404 Identities=15% Similarity=0.129 Sum_probs=315.4
Q ss_pred HHHHHHHHHHHccCC-CCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 2 ILTTLDSAVHWATSS-PYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 2 i~~~i~~A~~~a~~~-~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
|...+.||++.++.+ ..|||.|.+|.|++-.-. +++ .++| ....... ..+.|+...++.++
T Consensus 162 l~sal~rA~~VmTDPA~~GpvTl~l~QDVq~eA~----Dyp-~~FF----------~~rv~~~---rR~~Pd~~eL~~A~ 223 (617)
T COG3962 162 LMSALPRAMRVMTDPADCGPVTLALCQDVQAEAY----DYP-ESFF----------EKRVWRI---RRPPPDERELADAA 223 (617)
T ss_pred HHHHHHHHHHHhCChhhcCceEEEechhhhhhhc----CCc-HHhh----------hhhhhhc---cCCCCCHHHHHHHH
Confidence 567889999999886 569999999999643221 110 0111 1110101 13467888999999
Q ss_pred HHHhcCCceEEEEccCCCh-hHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHNE-DEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~~-~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|+++|||+||+|+|+.+ ++.++|++|+|..|+||+.|-. | ||.++.+||++ +|.+|..|..++++..+
T Consensus 224 ~lik~ak~PlIvaGGGv~YS~A~~~L~af~E~~~iPv~ETQa-G------Ksal~~dhplN--lG~vGvTGt~AAN~~A~ 294 (617)
T COG3962 224 ALIKSAKKPLIVAGGGVLYSGAREALRAFAETHGIPVVETQA-G------KSALAWDHPLN--LGGVGVTGTLAANRAAE 294 (617)
T ss_pred HHHHhcCCCEEEecCceeechHHHHHHHHHHhcCCceEeccC-C------cccccccCccc--cccccccchHHHHhhhh
Confidence 9999999999999999985 5667999999999999999984 8 89999999997 68888888999999999
Q ss_pred CCCEEEEeCCccccHHHHHHHHh-cCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC-CCChhHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEE-CFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP-HRSSKWCSFLRA 237 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~-~~~~~w~~~~~~ 237 (983)
+|||||.||+|+.++.|..|.-. .+..++|.++..+- +....-...+++|++..|++|.+.+.. +....|.++..+
T Consensus 295 ~ADlVigiGTR~~DFTTgS~alF~~~~~k~l~lNV~~~--da~K~~a~~lvaDAr~~L~~L~~~L~g~~~~~~w~~~~~~ 372 (617)
T COG3962 295 EADLVIGIGTRLQDFTTGSKALFKNPGVKFLNLNVQPF--DAYKHDALPLVADARAGLEALSEALGGYRTAAGWTDERER 372 (617)
T ss_pred hcCEEEEecccccccccccHHHhcCCCceEEEeecccc--cccccccceehhHHHHHHHHHHHHhcccccchhHHHHHHH
Confidence 99999999999999988877543 23346887776654 433345578899999999999998865 345568877766
Q ss_pred HHHHHHHHHHhhhcc----cCCCCHHHHHHHHHhhcCCCceEEEecCcch-hhhhhhcCCCcccccccccccccCCCCCc
Q 041113 238 LDMMVASEISFQICA----DYSLTEPHVAHELSRALTSNSALFVGNSMAI-RDLDMYGRNWTTCTHTVADIMLNSEFPHQ 312 (983)
Q Consensus 238 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 312 (983)
....|..+....... +.-.+..+++-.+++..+++++|++..|.-. -.+.+|-. ..|++
T Consensus 373 ~~~~w~~~~~~~~a~~~~lnt~ptq~~vigav~~~~~~~svvvcAAGsLPGdLhkLW~~------~~p~~---------- 436 (617)
T COG3962 373 LKAAWDAEADAPTAKNHFLNTLPTQTQVIGAVQRTISDDSVVVCAAGSLPGDLHKLWRA------GVPGT---------- 436 (617)
T ss_pred hhhhhhhhcccccccccccccCccchhHHHHHHhhcCCCcEEEEeCCCCcHHHHHHhcc------CCCCc----------
Confidence 655554433222111 1335678999999999999999997776644 34456653 34443
Q ss_pred ceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC
Q 041113 313 WIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD 391 (983)
Q Consensus 313 ~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~ 391 (983)
+|.-.+|.+||| -+..+||+|+|. ++.|++++|||||||--.||.|.+. +++.|+|++++|.|||.|..++...
T Consensus 437 -YH~EYgfSCMGY--EiaG~lG~K~a~pdreV~vmVGDGSymMlnSEL~Tsv~--~g~Ki~Vvl~DN~GyGCIn~LQm~~ 511 (617)
T COG3962 437 -YHLEYGFSCMGY--EIAGGLGAKAAEPDREVYVMVGDGSYMMLNSELATSVM--LGKKIIVVLLDNRGYGCINRLQMAT 511 (617)
T ss_pred -eeeeeccccccc--ccccccccccCCCCCeEEEEEcccchhhhhHHHHHHHH--cCCeEEEEEECCCCcchhhhhhhhc
Confidence 446789999999 899999999998 8999999999999999999999998 9999999999999999998875432
Q ss_pred CCCccccccccc------cCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchH
Q 041113 392 RTEPRILDQYFY------TTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANAT 457 (983)
Q Consensus 392 ~~~~~~~~~~~~------~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~ 457 (983)
.. ..|+..+. ...++||++.|++||++.++|.+.+||+.+|+++.++.+++||++.+++.....
T Consensus 512 Gg--~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~~i~eL~aAL~~Ak~~~~ttvi~I~t~P~~~t~ 581 (617)
T COG3962 512 GG--ASFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVGTIEELEAALADAKASDRTTVIVIDTDPKTTTD 581 (617)
T ss_pred Cc--chhhhhhhhhcccCCCCcccHHHHHhhcCceeEecCCHHHHHHHHHHHHhCCCCEEEEEecCCccccC
Confidence 21 22333222 235799999999999999999999999999999999999999999999965544
|
|
| >TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=393.34 Aligned_cols=299 Identities=15% Similarity=0.188 Sum_probs=237.4
Q ss_pred CCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCccc-------HHHHHHHHH-HHHhHhccCccccccccc
Q 041113 509 APPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN-------LLDAEEQLR-FLLHFMTGAKISYFLPLL 580 (983)
Q Consensus 509 ~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~-------~~~~~~~l~-~~~~~l~g~~~~~~~~~~ 580 (983)
.|.+.++.+. +...+.++|+|+|++|.+|||||+|..|++++ ..++...++ .++|.|+|+++.+++.++
T Consensus 36 ~~~t~~~~~~---~~~~~~vlV~i~tddG~~G~GE~~~~~ysg~~g~~~~~~~~~~~~~i~~~laP~LiG~d~~~~~~l~ 112 (408)
T TIGR01502 36 SPVTEGFTQI---RQPGESLSVLLVLEDGQVVHGDCAAVQYSGAGGRDPLFLAKDFIPVIEKEVAPKLIGRDITNFKDMA 112 (408)
T ss_pred CCCCCchhhh---eecCcEEEEEEEECCCCEEEEEeecceeccCccccccccHHHHHHHHHHHhhHHHcCCCccCHHHHH
Confidence 3555555543 24488999999999999999999876454443 455555565 589999999998866554
Q ss_pred ccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecC--CCCHHH
Q 041113 581 KGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDS--NKSPVE 658 (983)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~ 658 (983)
..+ ..... ... .+.++++|||+||||++||.+|+|+|+|||+.... ...+++||+|+++.. ..++++
T Consensus 113 ~~~-----~~~~~-~~~-~~~a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~----~~~~~~vp~~~s~g~~~~~~~d~ 181 (408)
T TIGR01502 113 EVF-----EKMTV-NRN-LHTAIRYGVSQALLDAAAKTRKTTMAEVIRDEYNP----GAETNAVPVFAQSGDDRYDNVDK 181 (408)
T ss_pred HHH-----HHHhh-cCc-chhHHHHHHHHHHHHHHHHHcCCcHHHHhCccccc----CCcCCceeEEEEeeccCCCCHHH
Confidence 321 11111 111 45678899999999999999999999999952100 001467999988632 356899
Q ss_pred HHHHHHHhhhcC-CCEEEEeccCCCChHHHH-------HHHHHHHHHcCCCcEEEEEcCC------CCCHHHHHHHHhhc
Q 041113 659 VASIATTLVEEG-FTAIKLKVARRADPIKDA-------EVIQEVRKKVGHRIELRVDANR------NWTYQEALEFGFLI 724 (983)
Q Consensus 659 ~~~~~~~~~~~G-~~~~KiKig~~~~~~~d~-------~~v~~vr~~~g~~~~l~vDaN~------~~~~~~a~~~~~~l 724 (983)
++.++++++++| |+.|| |+|. +..+|. ++|+++|+. |++..|++|+|+ +||+++|+++++.|
T Consensus 182 m~~~a~~~~~~G~~~~~K-kvG~--~~~k~~~~~~~~~~ri~~lr~~-g~~~~l~vDaN~~~~~~~~~~~~~ai~~l~~l 257 (408)
T TIGR01502 182 MILKEVDVLPHGLINSVE-ELGL--DGEKLLEYVKWLRDRIIKLGRE-GYAPIFHIDVYGTIGEAFGVDIKAMADYIQTL 257 (408)
T ss_pred HHHHHHHHHhccCcccee-eecC--CHHHhhhhHHHHHHHHHHhhcc-CCCCeEEEEcCCCcccccCCCHHHHHHHHHHH
Confidence 999999999998 99999 8997 444444 566666643 778899999998 99999999999999
Q ss_pred cc----CCCceeecCCC--C----hHHHHHHHhh-----cCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCc
Q 041113 725 KD----CDLQYIEEPVQ--N----EEDIIKYCEE-----SGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVI 788 (983)
Q Consensus 725 ~~----~~i~~iEeP~~--~----~~~~~~l~~~-----~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~ 788 (983)
++ +++ |||||++ + ++++++|+++ +++||++||++.++.| +..+++. .+|++|+|++++
T Consensus 258 ~~~~~~~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d-----~~~~i~~~a~d~v~iK~~k~ 331 (408)
T TIGR01502 258 AEAAKPFHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVED-----VKFFTDAKAGHMVQIKTPDV 331 (408)
T ss_pred HHhCccCCe-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHH-----HHHHHHhCCCCEEEeCcccc
Confidence 85 888 9999997 3 7888999987 6999999999999864 5555654 479999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhch
Q 041113 789 GGFENAGLIARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 789 GGl~~~~~~~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~ 831 (983)
|||+++++++++|+++|+++++|+++ ||+++.++++|++++.+
T Consensus 332 GGIt~a~kia~lA~~~Gi~~~~g~~~~es~I~~aa~~Hlaaa~~ 375 (408)
T TIGR01502 332 GGVNNIARAIMYCKANGMGAYVGGTCNETNRSAEVTTHVGMATG 375 (408)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999886 99999999999999876
|
This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation. |
| >cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-44 Score=392.63 Aligned_cols=287 Identities=17% Similarity=0.233 Sum_probs=223.4
Q ss_pred eeEEEEEEEECCCCEEEEeecCcCc---CcccH----HHHHHHH-HHHHhHhccCcccccccccccCchhhhhhhcCCCC
Q 041113 525 REGFILSLYLEDGSVGYGEVAPLEI---HKENL----LDAEEQL-RFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPA 596 (983)
Q Consensus 525 ~~~~lv~v~t~~G~~G~GE~~~~~~---~~~~~----~~~~~~l-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (983)
-+.++|||+||+|++||||+.|..+ ++++. ..+...+ +.++|.|+|+++.+++.++..+.. .. ...
T Consensus 12 ~~~vlV~I~tddG~~G~GEa~~~~~~~~~g~~~~~~~~~~~~~i~~~lap~LiG~d~~~i~~i~~~m~~-----~~-~~g 85 (369)
T cd03314 12 GEAISVMLVLEDGQVAVGDCAAVQYSGAGGRDPLFLAADFIPVIEKVIAPALVGRDVANFRPAAAVLDK-----MR-LDG 85 (369)
T ss_pred CcEEEEEEEECCCCEEEEecccccccCcCCcccccchHHHHHHHHHhhhhHhcCCCHHHHHHHHHHHHH-----Hh-hcC
Confidence 4688999999999999999875322 12212 2233344 358999999999987776643321 11 011
Q ss_pred CcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCC--CCHHHHHHHHHHhhh------
Q 041113 597 CEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSN--KSPVEVASIATTLVE------ 668 (983)
Q Consensus 597 ~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~------ 668 (983)
.....++++|||+|||||+||.+|+|||+||||... .-..+++|++|.++... ...+++.++++++++
T Consensus 86 ~~~~~aaksAIDiALwDl~gK~~g~Pv~~LLGg~~~----~g~~r~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (369)
T cd03314 86 NRLHTAIRYGVSQALLDAVALAQRRTMAEVLCDEYG----LPLADEPVPIFAQSGDDRYINVDKMILKGADVLPHALINN 161 (369)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhCCcHHHHcCCccc----CCCcccceEEEEEecCcccccHHHHHHHHHhhhhhhhhhh
Confidence 223457889999999999999999999999994310 00015789999875321 345777777666653
Q ss_pred ---cCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCC----C--CHHHHHHHHhhcccC-C--CceeecCC
Q 041113 669 ---EGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRN----W--TYQEALEFGFLIKDC-D--LQYIEEPV 736 (983)
Q Consensus 669 ---~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~----~--~~~~a~~~~~~l~~~-~--i~~iEeP~ 736 (983)
+||+.+|+|+ +.++|.++++++| ++|+++.|++|+|++ | |+++|+++++.|+++ + +.|||||+
T Consensus 162 ~k~kG~~~~K~~~----~~~~~~~~v~avr-~~G~~~~l~vDaN~~w~~~~~~~~~~A~~~~~~Le~~~~~~~~~iEqP~ 236 (369)
T cd03314 162 VEEKGPKGEKLLE----YVKWLSDRIRKLG-RPGYHPILHIDVYGTIGQAFDPDPDRAADYLATLEEAAAPFPLRIEGPM 236 (369)
T ss_pred HhhcCccHHHHHH----hHHHHHHHHHHHh-hcCCCCEEEEEcCCccccccCCCHHHHHHHHHHHHHhcCCCcEEEecCC
Confidence 3666666654 3567899999999 889999999999986 6 999999999999875 3 78999999
Q ss_pred C--C----hHHHHHHHhh-----cCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHc
Q 041113 737 Q--N----EEDIIKYCEE-----SGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRH 804 (983)
Q Consensus 737 ~--~----~~~~~~l~~~-----~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~ 804 (983)
+ | ++++++|+++ +++||++||+++++.+ ++.+++. .+|++|+|++++|||+++++++++|+++
T Consensus 237 ~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d-----~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~ 311 (369)
T cd03314 237 DAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLED-----IRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEH 311 (369)
T ss_pred CCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHH-----HHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHc
Confidence 8 3 5889999988 5899999999999764 6666654 4799999999999999999999999999
Q ss_pred CCcEEeCCC-CchHHHHHHHHHHHhhch
Q 041113 805 GKMAVVSAA-FESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 805 gi~~~~~~~-~es~ig~~a~~~laa~~~ 831 (983)
|+++++||+ ++++++.++++|++++++
T Consensus 312 Gi~~~~h~~~~es~I~~aa~lHlaaa~~ 339 (369)
T cd03314 312 GVGAYLGGSCNETDISARVTVHVALATR 339 (369)
T ss_pred CCcEEEeCCCCCchHHHHHHHHHHHhcC
Confidence 999998877 599999999999999977
|
This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >COG3960 Glyoxylate carboligase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=356.46 Aligned_cols=403 Identities=16% Similarity=0.204 Sum_probs=311.8
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+|.++++||+.++|+|||||.|++|+|+++.... ++. +.+ .|.+. + .+.....+.+++..
T Consensus 139 vp~v~qkafhlmrs~rpgpvlidlp~dvq~aeie--fd~------d~y----epl~~------~--kpaatr~qaekala 198 (592)
T COG3960 139 VPRVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIE--FDP------DMY----EPLPV------Y--KPAATRVQAEKALA 198 (592)
T ss_pred hHHHHHHHHHHHhcCCCCCeEEecccceEEEEEe--cCc------ccc----CcCCc------C--CchhHHHHHHHHHH
Confidence 5788999999999999999999999997665431 000 000 12211 1 23445567788999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhc-cCccccccC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHAL-LSESVKDWI 159 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~-~~~~~~~~~ 159 (983)
+|..|+||+|++|+|.. .++++.+.+|||..|+||+.|.| |. |++|++||+. .|+.|... +...+..+.
T Consensus 199 ml~~aerplivagggiinadaa~l~~efael~gvpviptlm-gw------g~ipddhplm--agm~glqtshrygnatll 269 (592)
T COG3960 199 MLIQAERPLIVAGGGVINADAAALLQEFAELTGVPVIPTLM-GW------GCIPDDHPLM--AGMVGLQTSHRYGNATLL 269 (592)
T ss_pred HHhhccCcEEEecCceecccHHHHHHHHHHHcCCcccchhc-cc------cccCCcchhh--cccccceecccccchhhh
Confidence 99999999999999976 45778999999999999999999 74 9999999995 67777543 345667788
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccC-------CCCChhH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQV-------PHRSSKW 231 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~-------~~~~~~w 231 (983)
.+|+|+-||.|+....| +....+. .+++||+|+.|..+++.+.+++.|++|.++.|+.+++... -+.+..|
T Consensus 270 ~sd~vfgignrwanrht-gsv~vyt~gr~fihvdieptqigrvf~pdlgivsda~aal~~~ldva~ewk~agkl~~~~aw 348 (592)
T COG3960 270 ASDMVFGIGNRWANRHT-GSVEVYTEGRKFIHVDIEPTQIGRVFCPDLGIVSDAKAALTLLLDVAQEWKKAGKLPCRKAW 348 (592)
T ss_pred hhhheeeccchhhhccc-CceeeeecCceEEEEeccccccceeecCccceeechHHHHHHHHHHHHHHHHcCCCccHHHH
Confidence 99999999999854443 3333343 3579999999999999999999999999999999887531 1345667
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCC
Q 041113 232 CSFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPH 311 (983)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 311 (983)
.+.+++++...... ..-++-|+.|.++.+++++..+.|...|...|. .++.+.+++++ ++||.|
T Consensus 349 ~~~cq~rkrtl~rk---thfd~vp~kpqrvyeemn~~fgrd~~yvstigl----sqia~aqflhv-~~pr~w-------- 412 (592)
T COG3960 349 VADCQQRKRTLLRK---THFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGL----SQIAAAQFLHV-FKPRHW-------- 412 (592)
T ss_pred HHHHHHHHHHHhhh---cccccCCCCHHHHHHHHHhhcCCceeEEEeccH----HHHhhhhhhhh-cCCcce--------
Confidence 77666655433221 112356899999999999999999999988888 77777787775 665554
Q ss_pred cceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 312 QWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 312 ~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
+. .+.-|.+|| .+|+|+|...|. ++.||++.||-.|+|-+.||...++ +++|-+-||+||...|.+++.+.+
T Consensus 413 --in-cgqagplgw--tipaalgv~~adp~r~vvalsgdydfqfmieelavgaq--~k~pyihv~vnnaylglirqaqr~ 485 (592)
T COG3960 413 --IN-CGQAGPLGW--TIPAALGVCAADPKRNVVAISGDYDFQFLIEELAVGAQ--FKIPYIHVLVNNAYLGLIRQAQRA 485 (592)
T ss_pred --ee-cCccCCccc--ccchhhceeecCCCCceEEeecCchHHHHHHHHhhhhc--ccCceEEEEecchHHHHHHHHHhc
Confidence 43 467799999 999999999999 9999999999999999999999998 999999999999999999874221
Q ss_pred CCC---Ccccccccccc---CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEEcCcccchH
Q 041113 391 DRT---EPRILDQYFYT---THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVESCIDANAT 457 (983)
Q Consensus 391 ~~~---~~~~~~~~~~~---~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~~~~~~~~~ 457 (983)
-.+ ..-.|++.... .-.+|-.++++++||+..+|.+++|+..+++++. +..-|+|+|+..++-.+-.
T Consensus 486 f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~~p~e~a~af~~a~~lm~eh~vpvvve~ilervtnis 562 (592)
T COG3960 486 FDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQHRVPVVVEVILERVTNIS 562 (592)
T ss_pred CCccceeeehhhccCCccccccCccceeehhccCceeEEecChHHhhHHHHHHHHHHHhcCCCeeeehHHHHhhccc
Confidence 100 00011111111 1258999999999999999999999999999874 3578999999988755443
|
|
| >cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=364.80 Aligned_cols=221 Identities=24% Similarity=0.361 Sum_probs=201.3
Q ss_pred EEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCcccccc
Q 041113 498 MEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFL 577 (983)
Q Consensus 498 v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~~~~~~ 577 (983)
|+++.+++|++.||.++.++. ..++.++|+|+|++|++||||+
T Consensus 1 i~~~~~~~p~~~~~~~~~~~~----~~~~~~iv~l~~~~G~~G~Ge~--------------------------------- 43 (229)
T cd00308 1 VEVYAVRLPTSRPFYLAGGTA----DTNDTVLVKLTTDSGVVGWGEV--------------------------------- 43 (229)
T ss_pred CEEEEEEeecCCceEecCceE----eeceeEEEEEEECCCCcchhhH---------------------------------
Confidence 467889999999999988764 4489999999999999999998
Q ss_pred cccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCCCHH
Q 041113 578 PLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPV 657 (983)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 657 (983)
++|||+||||++||.+|+|||+||||.. +.+||+|++
T Consensus 44 --------------------------~~aid~Al~Dl~gk~~~~pl~~llgg~~---------~~~v~~~~~-------- 80 (229)
T cd00308 44 --------------------------ISGIDMALWDLAAKALGVPLAELLGGGS---------RDRVPAYGS-------- 80 (229)
T ss_pred --------------------------HHHHHHHHHHHhHhHcCCcHHHHcCCCC---------CCceeccHH--------
Confidence 3889999999999999999999999975 467888754
Q ss_pred HHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC
Q 041113 658 EVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ 737 (983)
Q Consensus 658 ~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~ 737 (983)
+++|+++|+++|+++.|++|+|++|+.++|+++++.|+++++.|||||++
T Consensus 81 ------------------------------~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~ 130 (229)
T cd00308 81 ------------------------------IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGLAWIEEPCA 130 (229)
T ss_pred ------------------------------HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCeEECCCC
Confidence 77899999999999999999999999999999999999999999999998
Q ss_pred --ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC
Q 041113 738 --NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF 814 (983)
Q Consensus 738 --~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~ 814 (983)
+++++++|++.+++||++||++.+..+ +..+++ ..+|++|+|++++||++++++++++|+++|+++++|+++
T Consensus 131 ~~d~~~~~~L~~~~~~pIa~dEs~~~~~~-----~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~ 205 (229)
T cd00308 131 PDDLEGYAALRRRTGIPIAADESVTTVDD-----ALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTL 205 (229)
T ss_pred ccCHHHHHHHHhhCCCCEEeCCCCCCHHH-----HHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCC
Confidence 688999999999999999999998753 434444 457999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhchhh
Q 041113 815 ESGLGLSAYIIFSSYLELQ 833 (983)
Q Consensus 815 es~ig~~a~~~laa~~~~~ 833 (983)
+|+++.++++|++++++|.
T Consensus 206 ~s~i~~~a~~hlaa~~~~~ 224 (229)
T cd00308 206 ESSIGTAAALHLAAALPND 224 (229)
T ss_pred CCHHHHHHHHHHHHhCCCc
Confidence 9999999999999998863
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. |
| >KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=348.94 Aligned_cols=402 Identities=17% Similarity=0.134 Sum_probs=297.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
.++.|++|++.|.. ...||||.||.|..-.+.+.... -..|..-. +.. .......+.++.+++
T Consensus 145 A~~~ID~aI~~~~~-~~rPVYi~iP~n~~~~~~~~~~l------------~~~p~~~~--~~~--s~~e~~~~~v~~i~e 207 (561)
T KOG1184|consen 145 APEQIDKAIRTALK-ESKPVYIGVPANLADLPVPAFGL------------LPVPLDLS--PKP--SNKEGLEEAVDAILE 207 (561)
T ss_pred hHHHHHHHHHHHHH-hcCCeEEEeecccccCcCCcccC------------CCCCcccC--CCC--CcHHHHHHHHHHHHH
Confidence 57899999999997 55899999999854333211000 00111110 000 112334567888999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccc-cccC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESV-KDWI 159 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~-~~~~ 159 (983)
++.++++|+|++|.-.+ .....+..+|+++++.|++.|++ | ||.++|+||.| .|.|.+..+.... ..++
T Consensus 208 ~i~~~~~Pvil~~~~~~r~~~~~~~~~l~~~~~~p~~vtp~-g------Kg~i~E~hp~y--~Gvy~G~vs~~~~~e~ve 278 (561)
T KOG1184|consen 208 LINKAKKPVILGDPKLRRAKAESAFVELADATGFPVFVTPM-G------KGFIPESHPHY--GGVYWGAVSTPFVKEIVE 278 (561)
T ss_pred HhhhccCCeeeccccccHHHHHHHHHHHHHhhCCCeeEeec-c------cccccCcCCce--eeEEecccccHhHHHHHh
Confidence 99999999999999876 45667999999999999999998 7 99999999995 7887544444333 3568
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 239 (983)
.||+||.+|..+++..+.+|...++...+|+++.|...+.. ...-. -+++.+++.|++.+.....+ +.. ..+
T Consensus 279 saDlil~~G~~~sd~ss~~~~~~~k~~~~i~~~~d~v~i~~--~~f~~--v~mk~~l~~Lak~I~~~~~~-~~~---y~~ 350 (561)
T KOG1184|consen 279 SADLIIFAGPLFNDYSSGGFSYLYKKKNAIEFHSDRVKIRN--ATFGG--VLMKDFLQELAKRIKKNKTS-YEN---YVR 350 (561)
T ss_pred hcCeEEEecccccccccceeEeecCccceEEEecceEEecc--ccccc--eeHHHHHHHHHHhhcccccc-hhc---ccc
Confidence 99999999999999999888877776678888877755532 11112 27899999999887543211 100 000
Q ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
.....-.........++....++++++..+.++++++.++|.+ .|......+ + .+..+.....
T Consensus 351 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~d~v~~ETG~S-----~F~~~~~~f-P-----------~g~~~~~q~~ 413 (561)
T KOG1184|consen 351 IPVPEPKPLACPPNAPLRQEWMWNHIQKFLSSGDVVIAETGDS-----WFGINQTKF-P-----------KGCGYESQMQ 413 (561)
T ss_pred cCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCCceEEEecccc-----eecceeecc-c-----------cccceEEEEE
Confidence 0000000001123456889999999999999999999988882 233332222 2 2233335688
Q ss_pred CCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 320 RGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
||++|| ++|+++|+++|. +++|++++||||||+|+||++|+.| .++|+.|+|+||+||.+.+.++.
T Consensus 414 wgsIG~--svga~lG~a~a~~e~rvilfiGDGs~qlTvQeiStmir--~gl~~~if~~NN~GYTIE~~IH~--------- 480 (561)
T KOG1184|consen 414 WGSIGW--SVGATLGYAQAAPEKRVILFIGDGSFQLTVQEISTMIR--WGLKPIIFLINNGGYTIEVEIHD--------- 480 (561)
T ss_pred Eeeccc--cchhhhhhhhccCCceEEEEecCccceeeHHHHHHHHh--cCCCcEEEEEeCCceEEEEeecC---------
Confidence 999999 999999999999 9999999999999999999999999 99999999999999999987632
Q ss_pred ccccccCCCCCHHHHHHHcCC-----ceeeeCCHHHHHHHHHhhh--ccCCCEEEEEEcCcccchHHHHHHHHHHHH
Q 041113 399 DQYFYTTHNISIQNLCLAHGL-----NHVQVKTKVELEEALSMSQ--HLGTDRVIEVESCIDANATFHSMLRKFARQ 468 (983)
Q Consensus 399 ~~~~~~~~~~df~~la~a~G~-----~~~~v~~~~eL~~aL~~a~--~~~~p~lIeV~~~~~~~~~~~~~~~~~~~~ 468 (983)
.. +....+|||..+.++||. +..+|.+.+|+.++++.+. +.+++.+|||.++.++.++.+-.+++....
T Consensus 481 ~~-Yn~I~~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~~~~~~i~liEv~l~~~D~p~~L~~~~~~~a~ 556 (561)
T KOG1184|consen 481 GP-YNDIQNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATFEKNDKIRLIEVILPVDDAPKELLEWGSLVAA 556 (561)
T ss_pred CC-ccccccchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhhcccCceEEEEEecCcccChHHHHHHHHHhhh
Confidence 12 334567999999999985 4678999999999999876 357899999999999999988887776554
|
|
| >PRK02901 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=334.55 Aligned_cols=224 Identities=25% Similarity=0.360 Sum_probs=192.6
Q ss_pred cceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC-CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 041113 641 STSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR-ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALE 719 (983)
Q Consensus 641 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~-~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~ 719 (983)
+++|++|+++. ..+++++.+.++++ .||+++|+|+|.. .++++|+++|++||+++|+++.|++|+|++||+++|++
T Consensus 76 r~~vp~~~tv~-~~~~e~~~~~~~~~--~G~~~~KvKVg~~~~~~~~Di~rv~avRe~lGpd~~LrvDAN~~ws~~~Ai~ 152 (327)
T PRK02901 76 RDRVPVNATVP-AVDAAQVPEVLARF--PGCRTAKVKVAEPGQTLADDVARVNAVRDALGPDGRVRVDANGGWSVDEAVA 152 (327)
T ss_pred CCeEEeeEEeC-CCCHHHHHHHHHHh--CCCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 57899998863 34677776666654 6999999999852 26789999999999999999999999999999999999
Q ss_pred HHhhc-ccCCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHH
Q 041113 720 FGFLI-KDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLI 797 (983)
Q Consensus 720 ~~~~l-~~~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~ 797 (983)
+++.| +++++.||||||++.+++++|++++++|||+|||+++..| +..+++ .++|++++|++++||++++++
T Consensus 153 ~~~~L~e~~~l~~iEqP~~~~~~la~Lr~~~~vPIA~DEs~~~~~d-----~~~l~~~~a~dvi~ik~~~~GGit~~lk- 226 (327)
T PRK02901 153 AARALDADGPLEYVEQPCATVEELAELRRRVGVPIAADESIRRAED-----PLRVARAGAADVAVLKVAPLGGVRAALD- 226 (327)
T ss_pred HHHHhhhccCceEEecCCCCHHHHHHHHHhCCCCEEeCCCCCCHHH-----HHHHHHcCCCCEEEeCcchhCCHHHHHH-
Confidence 99999 7899999999999999999999999999999999999764 444554 457999999999999999888
Q ss_pred HHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----c
Q 041113 798 ARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----N 873 (983)
Q Consensus 798 ~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~ 873 (983)
+|+++|+++++||+++|+||+++++|++++++|. ...+|+++..++..|+ .+|+.+++ +
T Consensus 227 --iA~~~gi~v~v~s~~es~ig~aA~lhlaaalp~~--------------~~~~gl~t~~~~~~dl-~~~l~~~dG~i~v 289 (327)
T PRK02901 227 --IAEQIGLPVVVSSALDTSVGIAAGLALAAALPEL--------------DHACGLATGGLFEEDV-ADPLLPVDGFLPV 289 (327)
T ss_pred --HHHHcCCcEEEeCCcccHHHHHHHHHHHHhCCCC--------------CcccccCchhhhhhcc-CCCceeeCCEEeC
Confidence 5789999999999999999999999999999853 3345677777888888 77888773 6
Q ss_pred CCCCeeeEEecchhhhhhhccccc
Q 041113 874 SCRGFVEASVAKATHILQNLQINN 897 (983)
Q Consensus 874 P~~pGlGv~~d~a~~~~~~~~~~~ 897 (983)
|+ +++| ++.++++..+.
T Consensus 290 p~-----v~~d--~~~l~~~~~~~ 306 (327)
T PRK02901 290 RR-----VTPD--PARLAALAADP 306 (327)
T ss_pred CC-----CCCC--HHHHHhccCCH
Confidence 66 7888 88998988754
|
|
| >PRK00077 eno enolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=319.85 Aligned_cols=306 Identities=19% Similarity=0.175 Sum_probs=222.8
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-----------------cCcccHH
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-----------------IHKENLL 555 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-----------------~~~~~~~ 555 (983)
|||++|+.+.+- .+. .+++|.|+|+|++|.+|+|++.... |.+.++.
T Consensus 2 ~~I~~v~~r~i~--------dsr--------g~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~ 65 (425)
T PRK00077 2 SKIEDIIAREIL--------DSR--------GNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVL 65 (425)
T ss_pred CeEEEEEEEEEE--------cCC--------CCeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHH
Confidence 699999988872 222 2688999999999999999874211 2233333
Q ss_pred HHHHHH-HHHHhHhccCcccccccccccCchhhhhhhcCCC-CCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCcc
Q 041113 556 DAEEQL-RFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIP-ACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEI 633 (983)
Q Consensus 556 ~~~~~l-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~ 633 (983)
...+.+ +.+.|.|+|+++.+.+.++.. +....+.. .......|++|||+|+||+.||.+|+|||+||||...
T Consensus 66 ~av~~v~~~iap~LiG~d~~d~~~id~~-----l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLGG~~~- 139 (425)
T PRK00077 66 KAVENVNEEIAPALIGLDALDQRAIDKA-----MIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLYRYLGGPNA- 139 (425)
T ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHHH-----HHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCc-
Confidence 333334 468999999999875544321 11111100 0111247999999999999999999999999999641
Q ss_pred ccccccccceeEEEEeecCCC------CHHHH---------HHHHHHhhhcCCCEEEE---------eccCC----CChH
Q 041113 634 DEEISKRSTSIKICALIDSNK------SPVEV---------ASIATTLVEEGFTAIKL---------KVARR----ADPI 685 (983)
Q Consensus 634 ~~~~~~~~~~i~~~~~~~~~~------~~~~~---------~~~~~~~~~~G~~~~Ki---------Kig~~----~~~~ 685 (983)
.+.++|+|..++++. +..+. .+++.+....+|+.+|. ++|.. .+.+
T Consensus 140 ------~~~pvp~~n~i~GG~ha~~~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~g~~~~vGdeGg~~p~~~ 213 (425)
T PRK00077 140 ------KVLPVPMMNIINGGAHADNNVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEKGLSTAVGDEGGFAPNLK 213 (425)
T ss_pred ------ccccceeEEEEcccccccCchhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCcCCcCCCcc
Confidence 124577776543211 11121 14444555567888886 34521 2457
Q ss_pred HHHHHHHHHHHHc-------CCCcEEEEEcC-------CC-------CCHHHHHHH-HhhcccCCCceeecCCC--ChHH
Q 041113 686 KDAEVIQEVRKKV-------GHRIELRVDAN-------RN-------WTYQEALEF-GFLIKDCDLQYIEEPVQ--NEED 741 (983)
Q Consensus 686 ~d~~~v~~vr~~~-------g~~~~l~vDaN-------~~-------~~~~~a~~~-~~~l~~~~i~~iEeP~~--~~~~ 741 (983)
.|.++|+++|+++ |+++.|+||+| +. ||.++++++ .+.+++|++.|||||++ |+++
T Consensus 214 ~~~e~l~~lreAi~~ag~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i~~iEdPl~~~D~~g 293 (425)
T PRK00077 214 SNEEALDLILEAIEKAGYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPIVSIEDGLDENDWEG 293 (425)
T ss_pred chHHHHHHHHHHHHHhcCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCcEEEEcCCCCccHHH
Confidence 8999999999996 99999999993 44 466777766 44557799999999998 7899
Q ss_pred HHHHHhhc--CCcEEeCCCcc-CcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEe-CCCCch
Q 041113 742 IIKYCEES--GLPVALDETID-KFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVV-SAAFES 816 (983)
Q Consensus 742 ~~~l~~~~--~ipIa~dEs~~-~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~-~~~~es 816 (983)
+++|++++ .+||++||+.. +.. .+..+++. .++++++|++++||||++++++++|+++|+.+++ |++.||
T Consensus 294 ~~~L~~~~~~~ipI~gdE~~~t~~~-----~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt 368 (425)
T PRK00077 294 WKLLTEKLGDKVQLVGDDLFVTNTK-----RLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSGET 368 (425)
T ss_pred HHHHHHhcCCCCeEEcCCCccCCHH-----HHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcc
Confidence 99999998 69999999854 443 46666654 4799999999999999999999999999999887 555699
Q ss_pred HHHHHHHHHHHhhch
Q 041113 817 GLGLSAYIIFSSYLE 831 (983)
Q Consensus 817 ~ig~~a~~~laa~~~ 831 (983)
+.+..+.+|++...+
T Consensus 369 ~d~~~a~lava~~~~ 383 (425)
T PRK00077 369 EDTTIADLAVATNAG 383 (425)
T ss_pred hHHHHHHHHHHhCCc
Confidence 999999999988765
|
|
| >TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=322.99 Aligned_cols=292 Identities=29% Similarity=0.432 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+++.|++|++.|++++||||||+||+|++........+ ...|... +.... .. +...++++.++++++
T Consensus 140 ~~~~i~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~~~------~~~~~~~--~~~~~---~~--~~~~~~~~~i~~~~~ 206 (432)
T TIGR00173 140 LRSTVDRAVAQAQGPPPGPVHINVPFREPLYPDPLLQP------LQPWLRS--GVPTV---TT--GPPVLDPESLDELWD 206 (432)
T ss_pred HHHHHHHHHHHhhCCCCCCEEEeCCCCCCCCCCCcccc------ccccccc--ccccc---cC--CCCCCChhhHHHHHH
Confidence 67899999999999999999999999975433210000 0001000 00000 00 112345668999999
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchh-hhccCccccccCC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLD-HALLSESVKDWIQ 160 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g-~~~~~~~~~~~~~ 160 (983)
+|++||||+||+|+|+...+.+++.+|+|++++||++|++ | ||.+ ++| ++ +|.++ ..++...++.+ +
T Consensus 207 ~l~~AkrPvi~~G~g~~~~a~~~l~~lae~~~~PV~tt~~-~------~~~~-~~~-~~--~G~~~~~~~~~~~~~~~-~ 274 (432)
T TIGR00173 207 RLNQAKRGVIVAGPLPPAEDAEALAALAEALGWPLLADPL-S------GLRG-GPH-LV--IDHYDLLLANPELREEL-Q 274 (432)
T ss_pred HHhhcCCcEEEEcCCCcHHHHHHHHHHHHhCCCeEEEeCC-C------CCCC-CCC-CC--cCHHHHHhcCCchhhhC-C
Confidence 9999999999999998754678999999999999999998 5 7999 778 75 67775 45555565666 9
Q ss_pred CCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~~ 240 (983)
||+||+||+++.+..+..|... ++.++||||.|+..++++++.++.|++|++.++++|.+.+.. ....|.+.+.+...
T Consensus 275 aDlvl~lG~~~~~~~~~~~~~~-~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~~~~-~~~~~~~~~~~~~~ 352 (432)
T TIGR00173 275 PDLVIRFGGPPVSKRLRQWLAR-QPAEYWVVDPDPGWLDPSHHATTRLEASPAEFAEALAGLLKN-PDAAWLDRWLEAEA 352 (432)
T ss_pred CCEEEEeCCCcchhHHHHHHhC-CCCcEEEECCCCCccCCCCCceEEEEECHHHHHHHhhhccCC-CChHHHHHHHHHHH
Confidence 9999999999988777766322 235799999999999999999999999999999999888754 34467777766554
Q ss_pred HHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecC
Q 041113 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNR 320 (983)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 320 (983)
.+........ .+.++++.+++++|++.+|++.+|+.|+|++++... .++.....|++|+ .+.++
T Consensus 353 ~~~~~~~~~~-~~~~i~p~~~~~~l~~~lp~d~ivv~d~g~~~~~~~----~~~~~~~~~~~~~-----------~~~g~ 416 (432)
T TIGR00173 353 KAREALREVL-AEEPLSELSLARALSQLLPEGAALFVGNSMPIRDLD----TFAQPPDKPIRVF-----------ANRGA 416 (432)
T ss_pred HHHHHHHHHh-ccCCccHHHHHHHHHHhCCCCCeEEEECCHHHHHHH----hcCCcCCCCceEE-----------ecCch
Confidence 4433222211 235699999999999999999999999999555443 3433211455554 35788
Q ss_pred CCCCccchHHHHHhhhhc
Q 041113 321 GASGIDGLLSTAIGFAVG 338 (983)
Q Consensus 321 G~mG~~g~lpaaiGaalA 338 (983)
|+||+ |+|+|||+++.
T Consensus 417 g~mG~--glp~aiGa~~~ 432 (432)
T TIGR00173 417 SGIDG--TLSTALGIALA 432 (432)
T ss_pred hhHHH--HHHHHHHhhcC
Confidence 99999 99999999873
|
2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis. |
| >TIGR01060 eno phosphopyruvate hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=313.82 Aligned_cols=288 Identities=20% Similarity=0.186 Sum_probs=207.4
Q ss_pred eeEEEEEEEECCCCEEEEeecCcC-----------------cCcccHHHHHHHH-HHHHhHhccCcccccccccccCchh
Q 041113 525 REGFILSLYLEDGSVGYGEVAPLE-----------------IHKENLLDAEEQL-RFLLHFMTGAKISYFLPLLKGSFSS 586 (983)
Q Consensus 525 ~~~~lv~v~t~~G~~G~GE~~~~~-----------------~~~~~~~~~~~~l-~~~~~~l~g~~~~~~~~~~~~~~~~ 586 (983)
++++.|+|+|++|..|++++.... |.+..+....+.+ +.+.|.|+|+++.+...++..+
T Consensus 15 ~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~d~~~id~~l--- 91 (425)
T TIGR01060 15 NPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALIGMDAFDQREIDQIM--- 91 (425)
T ss_pred CceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH---
Confidence 688999999999999999864321 1111223333334 4589999999998765544321
Q ss_pred hhhhhcCCCCCc-chhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEE--EeecCC------CCHH
Q 041113 587 WIWSTLGIPACE-IFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKIC--ALIDSN------KSPV 657 (983)
Q Consensus 587 ~~~~~~~~~~~~-~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~--~~~~~~------~~~~ 657 (983)
....+..... ....|++|||||+||+.||.+|+|||+||||.. ++++|++ ..++++ .+.+
T Consensus 92 --~~~d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLGG~~---------~~~lPvp~~n~i~GG~~a~~~~~~q 160 (425)
T TIGR01060 92 --IELDGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLYRYLGGKN---------AYVLPVPMMNIINGGAHADNNLDFQ 160 (425)
T ss_pred --HhcCCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCC---------CCceeeEEEEeecccccccCccCHH
Confidence 1111111111 234799999999999999999999999999965 3455554 332211 1344
Q ss_pred HHH---------HHHHHhhhcCCCEEE--Ee-------ccCC----CChH---HH----HHHHHHHHHHcCCCcEEEEEc
Q 041113 658 EVA---------SIATTLVEEGFTAIK--LK-------VARR----ADPI---KD----AEVIQEVRKKVGHRIELRVDA 708 (983)
Q Consensus 658 ~~~---------~~~~~~~~~G~~~~K--iK-------ig~~----~~~~---~d----~~~v~~vr~~~g~~~~l~vDa 708 (983)
++. +++.+....||+++| +| +|.. .+.+ ++ .+.+++++..+|+++.|++|+
T Consensus 161 e~~i~p~~a~~~~e~~~~~~~g~~~lK~~l~~~~~~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~~G~di~l~lD~ 240 (425)
T TIGR01060 161 EFMIMPVGAKSFREALRMGAEVFHALKKLLKEKGLATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGEDVALALDC 240 (425)
T ss_pred HHhccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCCccccHHHHHHHHHHHHHHhhccCCceEEEEEc
Confidence 432 333333347899999 44 4520 1112 22 344555555689999999999
Q ss_pred CCC------------------CCHHHHHHHHhh-cccCCCceeecCCC--ChHHHHHHHhhc--CCcEEeCCCccC-cCC
Q 041113 709 NRN------------------WTYQEALEFGFL-IKDCDLQYIEEPVQ--NEEDIIKYCEES--GLPVALDETIDK-FQK 764 (983)
Q Consensus 709 N~~------------------~~~~~a~~~~~~-l~~~~i~~iEeP~~--~~~~~~~l~~~~--~ipIa~dEs~~~-~~~ 764 (983)
|.+ ||.++++++++. +++|++.|||||++ |++++++|++++ ++||++||+..+ ..
T Consensus 241 aas~~~~~~~~~y~~~~~~~~~s~~eai~~~~~lle~~~i~~iEdPl~~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~- 319 (425)
T TIGR01060 241 AASEFYDEEDGKYVYKGENKQLTSEEMIEYYKELVEKYPIVSIEDGLSEEDWEGWAELTKELGDKVQIVGDDLFVTNTE- 319 (425)
T ss_pred cccccccccCceeeecCcccccCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhcCCCCeEEeCCCcccCHH-
Confidence 732 466799999995 68899999999998 789999999999 899999998654 44
Q ss_pred ChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCC-CchHHHHHHHHHHHhhch
Q 041113 765 DPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAA-FESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 765 ~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~-~es~ig~~a~~~laa~~~ 831 (983)
.+..+++. .+|++++|++++||||++++++++|+++|+.++++|. .||+++.++.+|++...+
T Consensus 320 ----~~~~~i~~~a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~lava~~~~ 384 (425)
T TIGR01060 320 ----ILREGIEMGVANSILIKPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADLAVALNAG 384 (425)
T ss_pred ----HHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHHHHHhCcC
Confidence 36666654 4799999999999999999999999999999777666 799999999999998765
|
Alternate name: enolase |
| >cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=308.96 Aligned_cols=290 Identities=18% Similarity=0.221 Sum_probs=215.4
Q ss_pred eeEEEEEEEECCCCEEEEeecCcC-----------------cCcccHHHHHHHH-HHHHhHhccCcccccccccccCchh
Q 041113 525 REGFILSLYLEDGSVGYGEVAPLE-----------------IHKENLLDAEEQL-RFLLHFMTGAKISYFLPLLKGSFSS 586 (983)
Q Consensus 525 ~~~~lv~v~t~~G~~G~GE~~~~~-----------------~~~~~~~~~~~~l-~~~~~~l~g~~~~~~~~~~~~~~~~ 586 (983)
++++.|+|+|++|.+|+|++.... |.++++......+ ..+.|.|+|+++.+...+..
T Consensus 13 ~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~dq~~id~----- 87 (408)
T cd03313 13 NPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALIGMDVTDQRAIDK----- 87 (408)
T ss_pred CceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHcCCChhhHHHHHH-----
Confidence 788999999999999999975421 2344455554555 46889999999887543322
Q ss_pred hhhhhcCCC-CCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCC----C--C----
Q 041113 587 WIWSTLGIP-ACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSN----K--S---- 655 (983)
Q Consensus 587 ~~~~~~~~~-~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~----~--~---- 655 (983)
.+....+.. ......+|++|||||+||+.||.+|+|||++|||... .+-++|+|..+.++ . +
T Consensus 88 ~l~~~dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lgg~~~-------~~lpvp~~nvi~GG~ha~~~~~iqe~ 160 (408)
T cd03313 88 LLIELDGTPNKSKLGANAILGVSLAVAKAAAAALGLPLYRYLGGLAA-------YVLPVPMFNVINGGAHAGNKLDFQEF 160 (408)
T ss_pred HHHHhcCCCcccccchHHHHHHHHHHHHHHHHHcCCcHHHHhcCCCC-------cccceeeEEEecCcccccCccccccc
Confidence 111111111 1122257999999999999999999999999999641 12345555433211 0 1
Q ss_pred ---H--HHHHHHHHHhhhcCCCEEEE-----------eccCC----CChHHHHHHHHHHHHHc-------CCCcEEEEEc
Q 041113 656 ---P--VEVASIATTLVEEGFTAIKL-----------KVARR----ADPIKDAEVIQEVRKKV-------GHRIELRVDA 708 (983)
Q Consensus 656 ---~--~~~~~~~~~~~~~G~~~~Ki-----------Kig~~----~~~~~d~~~v~~vr~~~-------g~~~~l~vDa 708 (983)
| ++..+++.++...||+.+|- ++|.. .+.+.|.++|+.+|+++ |+++.|++|+
T Consensus 161 ~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~ 240 (408)
T cd03313 161 MIVPVGAPSFSEALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIALDV 240 (408)
T ss_pred cccccCccCHHHHHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCCCeEEEEEeh
Confidence 1 22335667777889999883 33310 24578999999999999 8899999999
Q ss_pred -----------------CCCCCHHHHHHHHhhc-ccCCCceeecCCC--ChHHHHHHHhhc--CCcEEeCCCc-cCcCCC
Q 041113 709 -----------------NRNWTYQEALEFGFLI-KDCDLQYIEEPVQ--NEEDIIKYCEES--GLPVALDETI-DKFQKD 765 (983)
Q Consensus 709 -----------------N~~~~~~~a~~~~~~l-~~~~i~~iEeP~~--~~~~~~~l~~~~--~ipIa~dEs~-~~~~~~ 765 (983)
|+.||+++++++++.| ++|++.|||||++ |++++++|++++ ++||++||+. .++.
T Consensus 241 aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~D~eg~~~L~~~~g~~ipi~gdE~~~~~~~-- 318 (408)
T cd03313 241 AASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDEDDWEGWAKLTAKLGDKIQIVGDDLFVTNPE-- 318 (408)
T ss_pred hhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCcCHHHHHHHHHhcCCCCeEEcCCcccCCHH--
Confidence 4557889999988886 6799999999998 889999999997 8999999975 4554
Q ss_pred hHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCC-CchHHHHHHHHHHHhhch
Q 041113 766 PLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAA-FESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 766 ~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~-~es~ig~~a~~~laa~~~ 831 (983)
.+..+++. .++++++|++++||+|++++++++|+++|++++++|. .|+.....+.+|++...+
T Consensus 319 ---~~~~~i~~~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~adlava~~~~ 383 (408)
T cd03313 319 ---RLKKGIEKKAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAG 383 (408)
T ss_pred ---HHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHHHHHHHHhCcC
Confidence 35666654 4799999999999999999999999999999988554 489888888777776654
|
The reaction is facilitated by the presence of metal ions. |
| >cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=284.51 Aligned_cols=184 Identities=15% Similarity=0.179 Sum_probs=154.7
Q ss_pred CCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHH
Q 041113 254 YSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAI 333 (983)
Q Consensus 254 ~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaai 333 (983)
+++++.++++.|++.+|++++++.|+|+ +..|..+++++ .+|++|+ .++++|+||| ++|+||
T Consensus 2 ~~l~~~~~~~~l~~~l~~~~ivv~d~G~----~~~~~~~~~~~-~~~~~~~-----------~~~~~g~mG~--~lpaai 63 (196)
T cd02013 2 NPMHPRQVLRELEKAMPEDAIVSTDIGN----ICSVANSYLRF-EKPRSFI-----------APLSFGNCGY--ALPAII 63 (196)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCcH----HHHHHHHhcCc-CCCCeEE-----------cCCCCccccc--HHHHHH
Confidence 4689999999999999999999999998 66777777664 5565554 3578899999 999999
Q ss_pred hhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccccccccc-CCCCCHH
Q 041113 334 GFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYT-THNISIQ 411 (983)
Q Consensus 334 GaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~-~~~~df~ 411 (983)
|+++|. +++|||++|||||+|++|||+|+++ |++|+++||+||++|++++..+.. ....++.++ .+++||+
T Consensus 64 Ga~la~p~r~vv~i~GDG~f~m~~~eL~Ta~~--~~lpvi~vV~NN~~yg~~~~~q~~-----~~~~~~~~~~~~~~d~~ 136 (196)
T cd02013 64 GAKAAAPDRPVVAIAGDGAWGMSMMEIMTAVR--HKLPVTAVVFRNRQWGAEKKNQVD-----FYNNRFVGTELESESFA 136 (196)
T ss_pred HHHHhCCCCcEEEEEcchHHhccHHHHHHHHH--hCCCeEEEEEECchhHHHHHHHHH-----HcCCCcccccCCCCCHH
Confidence 999999 9999999999999999999999999 999999999999999998753211 011112222 2469999
Q ss_pred HHHHHcCCceeeeCCHHHHHHHHHhhhc---cCCCEEEEEEcCcccchHHHHHH
Q 041113 412 NLCLAHGLNHVQVKTKVELEEALSMSQH---LGTDRVIEVESCIDANATFHSML 462 (983)
Q Consensus 412 ~la~a~G~~~~~v~~~~eL~~aL~~a~~---~~~p~lIeV~~~~~~~~~~~~~~ 462 (983)
++|++||+++.+|++++||+++|+++++ .++|+||||.++++...+..+.+
T Consensus 137 ~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~p~liev~v~~~~~~~~~~~~ 190 (196)
T cd02013 137 KIAEACGAKGITVDKPEDVGPALQKAIAMMAEGKTTVIEIVCDQELGDPFRRDA 190 (196)
T ss_pred HHHHHCCCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEEEeCcccCCchHHHh
Confidence 9999999999999999999999999987 89999999999988865544433
|
Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. |
| >cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-32 Score=284.35 Aligned_cols=183 Identities=17% Similarity=0.203 Sum_probs=150.4
Q ss_pred cCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHH
Q 041113 253 DYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTA 332 (983)
Q Consensus 253 ~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaa 332 (983)
+.++++.+++++|++.+|++++++.|.|+ +.+|..+++++ .+|++|+ .++++|+||| ++|+|
T Consensus 5 ~~~l~~~~~~~~l~~~l~~d~iiv~d~G~----~~~~~~~~~~~-~~~~~~~-----------~~~~~GsmG~--~lpaa 66 (202)
T cd02006 5 DVPIKPQRVYEEMNKAFGRDVRYVTTIGL----SQIAGAQMLHV-YKPRHWI-----------NCGQAGPLGW--TVPAA 66 (202)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEECCcH----HHHHHHHhcCc-CCCCeEE-----------ccCCccchhh--hhHHH
Confidence 34699999999999999999999999998 77777777664 5555554 3577899999 99999
Q ss_pred Hhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCC---cccccccc---ccC
Q 041113 333 IGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTE---PRILDQYF---YTT 405 (983)
Q Consensus 333 iGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~---~~~~~~~~---~~~ 405 (983)
|||++|+ +++||||+|||||+|++|||+|++| |++|+++||+||++|+++++.+...... ...+.... ...
T Consensus 67 iGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~--~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 144 (202)
T cd02006 67 LGVAAADPDRQVVALSGDYDFQFMIEELAVGAQ--HRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGG 144 (202)
T ss_pred HhHHhhCCCCeEEEEEeChHhhccHHHHHHHHH--hCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCC
Confidence 9999999 9999999999999999999999999 9999999999999999987532110000 00000000 112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc----cCCCEEEEEEcCcccc
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH----LGTDRVIEVESCIDAN 455 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~----~~~p~lIeV~~~~~~~ 455 (983)
+++||.++|++||+++.+|++.+||+++|+++++ .++|+||||.+++.+.
T Consensus 145 ~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev~i~~~~~ 198 (202)
T cd02006 145 YGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEAILERVTN 198 (202)
T ss_pred CCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEEEeccccc
Confidence 3699999999999999999999999999999984 6899999999998765
|
E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors. |
| >cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=269.39 Aligned_cols=174 Identities=36% Similarity=0.463 Sum_probs=142.9
Q ss_pred CHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhh
Q 041113 257 TEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFA 336 (983)
Q Consensus 257 ~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaa 336 (983)
+...++++|++.+|++++++.|+|+ +..|...+++..+.|++|+ ...++|+||+ ++|++||++
T Consensus 2 ~~~~~~~~l~~~l~~~~ivv~d~g~----~~~~~~~~~~~~~~~~~~~-----------~~~g~g~mG~--~l~~aiGa~ 64 (175)
T cd02009 2 TEPALARALPDHLPEGSQLFVGNSM----PIRDLDLFALPSDKTVRVF-----------ANRGASGIDG--TLSTALGIA 64 (175)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCH----HHHHHHHccCccCCCceEE-----------ecCCccchhh--HHHHHHHHH
Confidence 4567899999999999999999999 5556555554213444443 3577899999 999999999
Q ss_pred hccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHH
Q 041113 337 VGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLA 416 (983)
Q Consensus 337 lA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a 416 (983)
+|.+++||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+.... ...+...+..++++||.++|++
T Consensus 65 la~~~~Vv~i~GDGsf~m~~~eL~ta~~--~~l~v~ivVlNN~~~g~~~~~~~~~~--~~~~~~~~~~~~~~d~~~lA~a 140 (175)
T cd02009 65 LATDKPTVLLTGDLSFLHDLNGLLLGKQ--EPLNLTIVVINNNGGGIFSLLPQASF--EDEFERLFGTPQGLDFEHLAKA 140 (175)
T ss_pred hcCCCCEEEEEehHHHHHhHHHHHhccc--cCCCeEEEEEECCCCchheeccCCcc--cchhhhhhcCCCCCCHHHHHHH
Confidence 9988999999999999999999999998 99999999999999999876532111 0112222222247999999999
Q ss_pred cCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcC
Q 041113 417 HGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESC 451 (983)
Q Consensus 417 ~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~ 451 (983)
||+++.+|++++||+++|+++++.++|+||||.++
T Consensus 141 ~G~~~~~v~~~~el~~al~~a~~~~~p~lIev~v~ 175 (175)
T cd02009 141 YGLEYRRVSSLDELEQALESALAQDGPHVIEVKTD 175 (175)
T ss_pred cCCCeeeCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 99999999999999999999999999999999985
|
SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity. |
| >cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=268.57 Aligned_cols=171 Identities=14% Similarity=0.217 Sum_probs=144.9
Q ss_pred HHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhc
Q 041113 259 PHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVG 338 (983)
Q Consensus 259 ~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA 338 (983)
.+++++|++.+|+++++++|.|. +..|..++++. .+|++|+ .++++|+||| ++|+|||+++|
T Consensus 2 ~~~~~~l~~~l~~~~ii~~d~G~----~~~~~~~~~~~-~~~~~~~-----------~~~~~g~mG~--~lp~aiGa~la 63 (177)
T cd02010 2 QRIVHDLRAVMGDDDIVLLDVGA----HKIWMARYYRT-YAPNTCL-----------ISNGLATMGV--ALPGAIGAKLV 63 (177)
T ss_pred HHHHHHHHHHCCCCcEEEecCcH----HHHHHHHhCCc-CCCCCEE-----------eCCCChhhhh--HHHHHHHHHHh
Confidence 56899999999999999999998 66777766664 4444443 3578899999 99999999999
Q ss_pred c-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccc-cCCCCCHHHHHHH
Q 041113 339 C-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFY-TTHNISIQNLCLA 416 (983)
Q Consensus 339 ~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~-~~~~~df~~la~a 416 (983)
+ +++||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+.. .+.+... +..++||.++|++
T Consensus 64 ~~~~~vv~i~GDG~f~m~~~eL~ta~~--~~l~vi~vV~NN~~~g~~~~~~~~------~~~~~~~~~~~~~d~~~~a~a 135 (177)
T cd02010 64 YPDRKVVAVSGDGGFMMNSQELETAVR--LKIPLVVLIWNDNGYGLIKWKQEK------EYGRDSGVDFGNPDFVKYAES 135 (177)
T ss_pred CCCCcEEEEEcchHHHhHHHHHHHHHH--HCCCeEEEEEECCcchHHHHHHHH------hcCCcccCcCCCCCHHHHHHH
Confidence 9 8999999999999999999999999 999999999999999998653211 1111122 2246899999999
Q ss_pred cCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 417 HGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 417 ~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
||+++.+|++++||+++|+++++.++|+||||.+++.+.
T Consensus 136 ~G~~~~~v~~~~el~~al~~a~~~~~p~liev~~~~~~~ 174 (177)
T cd02010 136 FGAKGYRIESADDLLPVLERALAADGVHVIDCPVDYSEN 174 (177)
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEEEeccccc
Confidence 999999999999999999999999999999999987543
|
ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. |
| >cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=276.71 Aligned_cols=183 Identities=16% Similarity=0.149 Sum_probs=150.4
Q ss_pred HHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhc
Q 041113 259 PHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVG 338 (983)
Q Consensus 259 ~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA 338 (983)
.+++++|++.+|++++++.|.|+ +.+|..+++++ ++|++|+ .++++|+||| |+|+|||+++|
T Consensus 2 ~~~~~~l~~~l~~~~ivv~d~G~----~~~~~~~~~~~-~~~~~~~-----------~~~~~gsmG~--~lpaAiGa~la 63 (205)
T cd02003 2 TEVLGALNEAIGDDDVVINAAGS----LPGDLHKLWRA-RTPGGYH-----------LEYGYSCMGY--EIAAGLGAKLA 63 (205)
T ss_pred hhHHHHHHHhCCCCCEEEECCCc----chHHHHHhCCc-CCCCcEE-----------cCCCcchhhh--HHHHHHHHHHh
Confidence 35789999999999999999998 66777766664 5555554 3578899999 99999999999
Q ss_pred c-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccccccc-----------ccCC
Q 041113 339 C-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYF-----------YTTH 406 (983)
Q Consensus 339 ~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~-----------~~~~ 406 (983)
+ +++||+++|||+|+|+.+||+|+++ |++|+++||+||++|++++.++..... ..+...+ ...+
T Consensus 64 ~p~~~vv~i~GDGsf~m~~~eL~Ta~~--~~lpv~ivV~NN~~~g~~~~~q~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 139 (205)
T cd02003 64 KPDREVYVLVGDGSYLMLHSEIVTAVQ--EGLKIIIVLFDNHGFGCINNLQESTGS--GSFGTEFRDRDQESGQLDGALL 139 (205)
T ss_pred CCCCeEEEEEccchhhccHHHHHHHHH--cCCCCEEEEEECCccHHHHHHHHHhcC--ccccchhcccccccccccCCCC
Confidence 9 9999999999999999999999999 999999999999999999864321100 0111111 1235
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHHHH
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLR 463 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~~~ 463 (983)
++||.++|++||+++.+|++++||+++|+++++.++|+||||.+++++..+..+.++
T Consensus 140 ~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~v~~~~~~~~~~~~~ 196 (205)
T cd02003 140 PVDFAANARSLGARVEKVKTIEELKAALAKAKASDRTTVIVIKTDPKSMTPGYGSWW 196 (205)
T ss_pred CCCHHHHHHhCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEEEeeccccCCCCCCeE
Confidence 699999999999999999999999999999999999999999999877665554443
|
viciae IolD. IolD plays an important role in myo-inositol catabolism. |
| >cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-31 Score=269.01 Aligned_cols=175 Identities=22% Similarity=0.272 Sum_probs=147.2
Q ss_pred CCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhh
Q 041113 256 LTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGF 335 (983)
Q Consensus 256 ~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGa 335 (983)
+++.+++++|++.+|++++++.|+|. +..|..+++.+ +.|++|+ .++++|+||| ++|+|||+
T Consensus 1 ~~~~~~~~~l~~~l~~~~iiv~d~g~----~~~~~~~~~~~-~~~~~~~-----------~~~~~g~mG~--~lp~aiGa 62 (186)
T cd02015 1 IKPQEVIKELSELTPGDAIVTTDVGQ----HQMWAAQYYRF-KKPRSWL-----------TSGGLGTMGF--GLPAAIGA 62 (186)
T ss_pred CCHHHHHHHHHhhCCCCeEEEeCCcH----HHHHHHHhccc-CCCCeEE-----------eCCCccchhc--hHHHHHHH
Confidence 46788999999999999999999998 56676666664 4555544 3578899999 99999999
Q ss_pred hhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccc--cCCCCCHHH
Q 041113 336 AVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFY--TTHNISIQN 412 (983)
Q Consensus 336 alA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~--~~~~~df~~ 412 (983)
++|. +++||+++|||+|+|++|||+|+++ |++|+++||+||++|++++..+... ..++... ..+++||.+
T Consensus 63 ~la~~~~~vv~i~GDG~f~~~~~eL~ta~~--~~lpi~ivV~nN~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~~ 135 (186)
T cd02015 63 KVARPDKTVICIDGDGSFQMNIQELATAAQ--YNLPVKIVILNNGSLGMVRQWQELF-----YEGRYSHTTLDSNPDFVK 135 (186)
T ss_pred HHhCCCCeEEEEEcccHHhccHHHHHHHHH--hCCCeEEEEEECCccHHHHHHHHHH-----cCCceeeccCCCCCCHHH
Confidence 9999 8999999999999999999999999 9999999999999999987642110 0111111 124689999
Q ss_pred HHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 413 LCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 413 la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
+|++||+++.+|++.+||+++|+++++.++|+||||.+++++.
T Consensus 136 ~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~~~~~~~ 178 (186)
T cd02015 136 LAEAYGIKGLRVEKPEELEAALKEALASDGPVLLDVLVDPEEN 178 (186)
T ss_pred HHHHCCCceEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCCcc
Confidence 9999999999999999999999999988999999999997654
|
AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. |
| >cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=263.43 Aligned_cols=175 Identities=22% Similarity=0.208 Sum_probs=147.9
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHh
Q 041113 255 SLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIG 334 (983)
Q Consensus 255 ~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiG 334 (983)
++++.++++.|++.++++++++.|.|+ .. |...++.. .+|++|+ .++++|+||+ ++|+|+|
T Consensus 1 ~l~~~~~~~~l~~~l~~~~iiv~d~g~----~~-~~~~~~~~-~~~~~~~-----------~~~~~g~mG~--~l~~aiG 61 (183)
T cd02005 1 PLTQARLWQQVQNFLKPNDILVAETGT----SW-FGALDLKL-PKGTRFI-----------SQPLWGSIGY--SVPAALG 61 (183)
T ss_pred CCCHHHHHHHHHHhcCCCCEEEECCch----HH-HhhhhccC-CCCCEEE-----------eccchhhHhh--hHHHHHH
Confidence 478899999999999999999999998 32 44444443 4444443 3578899999 9999999
Q ss_pred hhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHH
Q 041113 335 FAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNL 413 (983)
Q Consensus 335 aalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~l 413 (983)
+++|. +++|++++|||+|+|++|||+|+++ |++|+++||+||++|++++..+... ..+....++||.++
T Consensus 62 aala~~~~~vv~i~GDG~f~~~~~el~ta~~--~~~p~~ivV~nN~~~~~~~~~~~~~--------~~~~~~~~~d~~~i 131 (183)
T cd02005 62 AALAAPDRRVILLVGDGSFQMTVQELSTMIR--YGLNPIIFLINNDGYTIERAIHGPE--------ASYNDIANWNYTKL 131 (183)
T ss_pred HHHhCCCCeEEEEECCchhhccHHHHHHHHH--hCCCCEEEEEECCCcEEEEEeccCC--------cCcccCCCCCHHHH
Confidence 99999 8999999999999999999999999 9999999999999999987643211 11122246899999
Q ss_pred HHHcC----CceeeeCCHHHHHHHHHhhhc-cCCCEEEEEEcCcccchHH
Q 041113 414 CLAHG----LNHVQVKTKVELEEALSMSQH-LGTDRVIEVESCIDANATF 458 (983)
Q Consensus 414 a~a~G----~~~~~v~~~~eL~~aL~~a~~-~~~p~lIeV~~~~~~~~~~ 458 (983)
|++|| +++.+|++.+||+++|+++++ .++|+||||.++++++++.
T Consensus 132 a~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~liev~~~~~~~~~~ 181 (183)
T cd02005 132 PEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLIEVILPKDDAPEA 181 (183)
T ss_pred HHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEEEEEcCcccCCcc
Confidence 99999 799999999999999999998 8999999999999887754
|
PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors. |
| >cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-29 Score=256.01 Aligned_cols=171 Identities=23% Similarity=0.119 Sum_probs=142.8
Q ss_pred HHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhh
Q 041113 258 EPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAV 337 (983)
Q Consensus 258 ~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaal 337 (983)
|.+++++|++.+|++++++.|+|. +..|..+++++ +.|++|+ .++++|+||+ ++|+|||+++
T Consensus 1 p~~~~~~l~~~l~~~~iiv~d~g~----~~~~~~~~~~~-~~p~~~~-----------~~~~~g~mG~--~lp~AiGa~l 62 (172)
T cd02004 1 PYRVLHELQEALPDDAIIVSDGGN----TMDWARYILRP-RKPRHRL-----------DAGTFGTLGV--GLGYAIAAAL 62 (172)
T ss_pred CHHHHHHHHHHCCCCcEEEEcCch----HHHHHHHHccc-cCCCcEe-----------cCCCCCcccc--hHHHHHHHHH
Confidence 357899999999999999999998 66677666654 5555544 3578899999 9999999999
Q ss_pred cc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHH
Q 041113 338 GC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLA 416 (983)
Q Consensus 338 A~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a 416 (983)
|. +++|+|++|||+|+|+.+||+|+++ +++|+++||+||++|++++..+.... ..........+.+||.++|++
T Consensus 63 a~~~~~vv~i~GDG~f~~~~~el~ta~~--~~lpv~ivv~NN~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~~la~a 137 (172)
T cd02004 63 ARPDKRVVLVEGDGAFGFSGMELETAVR--YNLPIVVVVGNNGGWYQGLDGQQLSY---GLGLPVTTLLPDTRYDLVAEA 137 (172)
T ss_pred hCCCCeEEEEEcchhhcCCHHHHHHHHH--cCCCEEEEEEECcccccchhhhhhhc---cCCCceeccCCCCCHHHHHHH
Confidence 99 8999999999999999999999999 99999999999999999976532110 000111112357999999999
Q ss_pred cCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcC
Q 041113 417 HGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESC 451 (983)
Q Consensus 417 ~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~ 451 (983)
||+++.+|++.+||+++|+++++.++|.||||.++
T Consensus 138 ~G~~~~~v~~~~el~~al~~a~~~~~p~liev~i~ 172 (172)
T cd02004 138 FGGKGELVTTPEELKPALKRALASGKPALINVIID 172 (172)
T ss_pred CCCeEEEECCHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 99999999999999999999998899999999985
|
Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. |
| >cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-30 Score=258.09 Aligned_cols=174 Identities=18% Similarity=0.217 Sum_probs=147.7
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHh
Q 041113 255 SLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIG 334 (983)
Q Consensus 255 ~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiG 334 (983)
++++..++++|++.++++++++.|.|. +..|..+++.. .+|++|+ .++++|+||| ++|+|+|
T Consensus 1 ~~~~~~~~~~l~~~~~~~~ii~~d~g~----~~~~~~~~~~~-~~~~~~~-----------~~~~~g~mG~--~~~~aiG 62 (178)
T cd02014 1 PIHPERVAAELNKRAPDDAIFTIDVGN----VTVWAARHLRM-NGKQRFI-----------LSGLLATMGN--GLPGAIA 62 (178)
T ss_pred CCCHHHHHHHHHhHCCCCeEEEEcCcH----HHHHHHHhccc-CCCCcEE-----------cCCCCchhhh--HHHHHHH
Confidence 367899999999999999999999998 56666666553 5555554 3578899999 9999999
Q ss_pred hhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccccccccc-CCCCCHHH
Q 041113 335 FAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYT-THNISIQN 412 (983)
Q Consensus 335 aalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~-~~~~df~~ 412 (983)
+++|. +++||+++|||||+|++|||+|+++ +++|+++||+||++|++++..+.. .....+.+ .+++||.+
T Consensus 63 a~~a~~~~~vv~i~GDG~f~~~~~el~t~~~--~~lp~~~iv~NN~~~~~~~~~~~~------~~~~~~~~~~~~~d~~~ 134 (178)
T cd02014 63 AKLAYPDRQVIALSGDGGFAMLMGDLITAVK--YNLPVIVVVFNNSDLGFIKWEQEV------MGQPEFGVDLPNPDFAK 134 (178)
T ss_pred HHHhCCCCcEEEEEcchHHHhhHHHHHHHHH--hCCCcEEEEEECCchhHHHHHHHH------hcCCceeccCCCCCHHH
Confidence 99999 8999999999999999999999999 999999999999999998643110 11122232 24789999
Q ss_pred HHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 413 LCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 413 la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
+|++||+++.++++++||+++|+++++.++|+||||.+++++
T Consensus 135 la~a~G~~~~~v~~~~el~~~l~~a~~~~~p~liev~~~~~~ 176 (178)
T cd02014 135 IAEAMGIKGIRVEDPDELEAALDEALAADGPVVIDVVTDPNE 176 (178)
T ss_pred HHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCCC
Confidence 999999999999999999999999999999999999998765
|
POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. |
| >PLN00191 enolase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-27 Score=266.62 Aligned_cols=300 Identities=13% Similarity=0.116 Sum_probs=212.6
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCC----------EEEEeecCcC-----cCcccHHH-
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGS----------VGYGEVAPLE-----IHKENLLD- 556 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~----------~G~GE~~~~~-----~~~~~~~~- 556 (983)
|+|++|+.+.+- .+. .+++|.|+|+|++|. +|++|+.-.. |.+..+..
T Consensus 26 ~~I~~v~~r~il--------dsr--------G~PtVeveV~~~~G~~~a~~psgastG~~Ea~elrd~~~~~~g~gv~~A 89 (457)
T PLN00191 26 ATITKVKARQII--------DSR--------GNPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGDKDYLGKGVLKA 89 (457)
T ss_pred CeeeEEEEEEEE--------cCC--------CCeEEEEEEEECCCCEEEEeccCCCCCcceeeeccCCCcccCCccHHHH
Confidence 699999998872 222 268899999999997 7888874321 22333333
Q ss_pred HHHHHHHHHhHhccCccccc---ccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhc---CCC
Q 041113 557 AEEQLRFLLHFMTGAKISYF---LPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNIL---YPL 630 (983)
Q Consensus 557 ~~~~l~~~~~~l~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lL---Gg~ 630 (983)
+......+.|.|+|.++.+. ..++...+.+.. .......|+.||++|+|++.|+..|+|||++| ||.
T Consensus 90 v~~v~~~ia~~LiG~~~~dq~~iD~~l~~ldgt~n-------k~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~gg~ 162 (457)
T PLN00191 90 VKNVNEIIAPALIGMDPTDQTQIDNFMLELDGTPN-------KGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGN 162 (457)
T ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHccCCCC-------ccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhhCCC
Confidence 33333568999999998763 222322221111 11234678999999999999999999999999 664
Q ss_pred CccccccccccceeEEEE--eecCC-------------------CCHHHHH-------HHHHHhhhc--CCCEEEEeccC
Q 041113 631 TEIDEEISKRSTSIKICA--LIDSN-------------------KSPVEVA-------SIATTLVEE--GFTAIKLKVAR 680 (983)
Q Consensus 631 ~~~~~~~~~~~~~i~~~~--~~~~~-------------------~~~~~~~-------~~~~~~~~~--G~~~~KiKig~ 680 (983)
. ...+|++. .++++ .+..+.+ ..+++.++. |.... .+|.
T Consensus 163 ~---------~~~lP~p~~niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~--~vgd 231 (457)
T PLN00191 163 K---------KLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDAC--NVGD 231 (457)
T ss_pred C---------CccccceeEEeecCccccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcC--ccCC
Confidence 3 12344332 22111 1222211 111222211 33211 2332
Q ss_pred ----CCChHHHHHHHHHHHHHcC-----CCcEEEEEcCCC--------C---------------CHHHHHHHHhhc-ccC
Q 041113 681 ----RADPIKDAEVIQEVRKKVG-----HRIELRVDANRN--------W---------------TYQEALEFGFLI-KDC 727 (983)
Q Consensus 681 ----~~~~~~d~~~v~~vr~~~g-----~~~~l~vDaN~~--------~---------------~~~~a~~~~~~l-~~~ 727 (983)
.++.+.+.+.|+.++++++ +++.|.+|+..+ | |.++++++.+.| ++|
T Consensus 232 eGg~ap~~~~~~eal~ll~eAi~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y 311 (457)
T PLN00191 232 EGGFAPNIQDNKEGLELLKEAIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDY 311 (457)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcC
Confidence 1234567788888888876 679999998443 3 788999999996 559
Q ss_pred CCceeecCCC--ChHHHHHHHhhcCCcEEeCCCc-cCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHH
Q 041113 728 DLQYIEEPVQ--NEEDIIKYCEESGLPVALDETI-DKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQR 803 (983)
Q Consensus 728 ~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~-~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~ 803 (983)
++.|||||++ |++++++|+++..+||++||+. .++. .+..+++.+ ++++++|++++||++++++++++|++
T Consensus 312 ~I~~IEDPl~~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~-----~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~ 386 (457)
T PLN00191 312 PIVSIEDPFDQDDWEHWAKLTSLEDVQIVGDDLLVTNPK-----RVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKA 386 (457)
T ss_pred CcEEEECCCCcccHHHHHHHHccCCCcEEccCcccCCHH-----HHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHH
Confidence 9999999998 8999999999999999999996 5554 355666544 79999999999999999999999999
Q ss_pred cCCcEEeCC-CCchHHHHHHHHHHHhhch
Q 041113 804 HGKMAVVSA-AFESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 804 ~gi~~~~~~-~~es~ig~~a~~~laa~~~ 831 (983)
+|++++++| +.||+++.++.+|+++..+
T Consensus 387 ~G~~~~ishrsgET~d~~~Adlava~~~~ 415 (457)
T PLN00191 387 AGWGVMTSHRSGETEDSFIADLAVGLATG 415 (457)
T ss_pred CCCEEEeCCCCccchHHHHHHHHHHhCCC
Confidence 999999988 9999999999999999876
|
|
| >PRK06163 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=249.08 Aligned_cols=164 Identities=16% Similarity=0.206 Sum_probs=137.1
Q ss_pred CCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHH
Q 041113 254 YSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAI 333 (983)
Q Consensus 254 ~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaai 333 (983)
..++..++++.|++.+++++++++|.|++. +.+|..+ ..|+ .++ .+|+||| |+|+||
T Consensus 11 ~~~~~~~~i~~l~~~l~~~~~iv~D~G~~~--~~~~~~~-----~~~~----------~~~----~~GsMG~--glpaAi 67 (202)
T PRK06163 11 KVMNRFDLTCRLVAKLKDEEAVIGGIGNTN--FDLWAAG-----QRPQ----------NFY----MLGSMGL--AFPIAL 67 (202)
T ss_pred CCcCHHHHHHHHHHhcCCCCEEEECCCccH--HHHHHhh-----cCCC----------CeE----eeccccc--HHHHHH
Confidence 468889999999999999999999999622 2345542 1222 222 3799999 999999
Q ss_pred hhhhcc-CceEEEEEccchhhhccchHHHHHhhcc-CCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHH
Q 041113 334 GFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMK-RKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQ 411 (983)
Q Consensus 334 GaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~-~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~ 411 (983)
|+++|+ +++||||+|||||+|++|||+|+++ | ++|+++||+||++|++.... . +.+.+++||.
T Consensus 68 GaalA~p~r~Vv~i~GDG~f~m~~~eL~Ta~~--~~~lpi~ivV~NN~~yg~~~~~--------~-----~~~~~~~Df~ 132 (202)
T PRK06163 68 GVALAQPKRRVIALEGDGSLLMQLGALGTIAA--LAPKNLTIIVMDNGVYQITGGQ--------P-----TLTSQTVDVV 132 (202)
T ss_pred HHHHhCCCCeEEEEEcchHHHHHHHHHHHHHH--hcCCCeEEEEEcCCchhhcCCc--------c-----CCCCCCCCHH
Confidence 999999 9999999999999999999999987 6 68999999999999986321 0 1122569999
Q ss_pred HHHHHcCCc-eeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 412 NLCLAHGLN-HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 412 ~la~a~G~~-~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
++|++||++ +++|++.+||+++|+++++.++|.||||.+++...
T Consensus 133 ~lA~a~G~~~~~~v~~~~el~~al~~a~~~~~p~lIeV~i~~~~~ 177 (202)
T PRK06163 133 AIARGAGLENSHWAADEAHFEALVDQALSGPGPSFIAVRIDDKPG 177 (202)
T ss_pred HHHHHCCCceEEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCCCC
Confidence 999999998 68999999999999999999999999999997654
|
|
| >cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=243.66 Aligned_cols=174 Identities=22% Similarity=0.222 Sum_probs=139.9
Q ss_pred CCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhh
Q 041113 256 LTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGF 335 (983)
Q Consensus 256 ~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGa 335 (983)
+++.+++++|++.+|++++++.|.|. +..|...+++. ..|++|+ .+++ |+||+ ++|+|||+
T Consensus 1 ~~~~~~~~~l~~~l~~~~~iv~d~g~----~~~~~~~~~~~-~~~~~~~-----------~~~~-g~mG~--~lp~aiGa 61 (178)
T cd02002 1 LTPEYLAAALAAALPEDAIIVDEAVT----NGLPLRDQLPL-TRPGSYF-----------TLRG-GGLGW--GLPAAVGA 61 (178)
T ss_pred CCHHHHHHHHHhhCCCCeEEEecCCc----ccHHHHHhccc-CCCCCee-----------ccCC-ccccc--hHHHHHHH
Confidence 46788999999999999999999988 45566555543 4454443 3466 99999 99999999
Q ss_pred hhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccc---cCCCCCHH
Q 041113 336 AVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFY---TTHNISIQ 411 (983)
Q Consensus 336 alA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~---~~~~~df~ 411 (983)
++|. +++|++++|||+|+|+.+||+|+++ +++|+++||+||++|++++..+...........+++. ..+.+||.
T Consensus 62 ala~~~~~vv~i~GDG~f~~~~~el~ta~~--~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 139 (178)
T cd02002 62 ALANPDRKVVAIIGDGSFMYTIQALWTAAR--YGLPVTVVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFA 139 (178)
T ss_pred HhcCCCCeEEEEEcCchhhccHHHHHHHHH--hCCCeEEEEEcCccHHHHHHHHHHHcCCCcccccccccccCCCCCCHH
Confidence 9998 8999999999999999999999999 8999999999999999986542110000000001111 12468999
Q ss_pred HHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEc
Q 041113 412 NLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVES 450 (983)
Q Consensus 412 ~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~ 450 (983)
++|++||+++.+|++.+||+++|+++.+.++|.||||.+
T Consensus 140 ~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~vi~v~v 178 (178)
T cd02002 140 AIAKAFGVEAERVETPEELDEALREALAEGGPALIEVVV 178 (178)
T ss_pred HHHHHcCCceEEeCCHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 999999999999999999999999999889999999975
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. |
| >cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-27 Score=232.95 Aligned_cols=155 Identities=14% Similarity=0.118 Sum_probs=128.8
Q ss_pred HHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhc
Q 041113 259 PHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVG 338 (983)
Q Consensus 259 ~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA 338 (983)
..+++.|.+.+ ++.+|+.|.|. +..|. +... ..|++ ++ . +|+||+ ++|+|||+++|
T Consensus 2 ~~~~~~l~~~l-~d~~vv~d~G~----~~~~~--~~~~-~~~~~----------~~---~-~gsmG~--~lp~AiGa~~a 57 (157)
T cd02001 2 IAAIAEIIEAS-GDTPIVSTTGY----ASREL--YDVQ-DRDGH----------FY---M-LGSMGL--AGSIGLGLALG 57 (157)
T ss_pred HHHHHHHHHhC-CCCEEEeCCCH----hHHHH--HHhh-cCCCC----------EE---e-ecchhh--HHHHHHHHHhc
Confidence 35788999999 79999999998 33343 1110 23332 22 2 899999 99999999999
Q ss_pred cCceEEEEEccchhhhccchHHHHHhhcc-CCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHHc
Q 041113 339 CNKHVLCVVGDISFLHDTNGLAILKQRMK-RKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAH 417 (983)
Q Consensus 339 ~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~-~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~ 417 (983)
..++||+|+|||||+|+++||+|+++ | ++|+++||+||++|+++... .. . ..++||.++|++|
T Consensus 58 ~~~~Vv~i~GDG~f~m~~~el~t~~~--~~~~~i~~vV~nN~~~g~~~~~--------~~----~--~~~~d~~~lA~a~ 121 (157)
T cd02001 58 LSRKVIVVDGDGSLLMNPGVLLTAGE--FTPLNLILVVLDNRAYGSTGGQ--------PT----P--SSNVNLEAWAAAC 121 (157)
T ss_pred CCCcEEEEECchHHHhcccHHHHHHH--hcCCCEEEEEEeCccccccCCc--------CC----C--CCCCCHHHHHHHC
Confidence 88899999999999999999999998 8 59999999999999998531 00 1 1268999999999
Q ss_pred CCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcc
Q 041113 418 GLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCID 453 (983)
Q Consensus 418 G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~ 453 (983)
|+++.+|++++||+++|+++++.++|.||||.++++
T Consensus 122 G~~~~~v~~~~el~~al~~a~~~~gp~vi~v~i~~~ 157 (157)
T cd02001 122 GYLVLSAPLLGGLGSEFAGLLATTGPTLLHAPIAPG 157 (157)
T ss_pred CCceEEcCCHHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 999999999999999999999999999999999763
|
Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors. |
| >TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-27 Score=235.21 Aligned_cols=157 Identities=16% Similarity=0.266 Sum_probs=128.8
Q ss_pred HHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhc
Q 041113 259 PHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVG 338 (983)
Q Consensus 259 ~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA 338 (983)
..++++|++.+| +++++.|.|.... .++ ...+.|++| + .+|+||+ |+|+|||+++|
T Consensus 2 ~~~~~~l~~~l~-d~iiv~d~G~~~~--~~~-----~~~~~~~~~----------~----~~gsmG~--~lpaAiGa~la 57 (181)
T TIGR03846 2 IDAIRAIASYLE-DELVVSNIGVPSK--ELY-----AIRDRPLNF----------Y----MLGSMGL--ASSIGLGLALA 57 (181)
T ss_pred HHHHHHHHHhCC-CCEEEecCCHhHH--HHH-----hhhcCCCCe----------e----ecccccc--HHHHHHHHHHc
Confidence 457899999998 9999999997321 111 100223222 2 2799999 99999999999
Q ss_pred cCceEEEEEccchhhhccchHHHHHhhccC-CCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHHc
Q 041113 339 CNKHVLCVVGDISFLHDTNGLAILKQRMKR-KPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAH 417 (983)
Q Consensus 339 ~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~-lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~ 417 (983)
++++|||++|||+|+|++|||+|+++ |+ +|+++||+||++|++++.. . . .+.+++||+++|++|
T Consensus 58 ~~~~Vv~i~GDG~f~m~~~el~ta~~--~~~~pv~~vV~NN~~yg~~~~q--~------~-----~~~~~~d~~~lA~a~ 122 (181)
T TIGR03846 58 TDRTVIVIDGDGSLLMNLGVLPTIAA--ESPKNLILVILDNGAYGSTGNQ--P------T-----PASRRTDLELVAKAA 122 (181)
T ss_pred CCCcEEEEEcchHHHhhhhHHHHHHH--hCCCCeEEEEEeCCccccccCc--C------C-----CCCCCCCHHHHHHHC
Confidence 98999999999999999999999998 89 5999999999999998521 0 0 111468999999999
Q ss_pred CCceee-eCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 418 GLNHVQ-VKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 418 G~~~~~-v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
|+++.+ |++++||+++|+ +++.++|+||||.+++++.
T Consensus 123 G~~~~~~v~~~~~l~~al~-a~~~~~p~li~v~~~~~~~ 160 (181)
T TIGR03846 123 GIRNVEKVADEEELRDALK-ALAMKGPTFIHVKVKPGNA 160 (181)
T ss_pred CCCeEEEeCCHHHHHHHHH-HHcCCCCEEEEEEeCCCCC
Confidence 999999 999999999997 8888999999999998764
|
Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-26 Score=221.47 Aligned_cols=294 Identities=26% Similarity=0.430 Sum_probs=223.7
Q ss_pred EEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHH-HHHhHhccCccc
Q 041113 497 RMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLR-FLLHFMTGAKIS 574 (983)
Q Consensus 497 ~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~-~~~~~l~g~~~~ 574 (983)
+.++|.|.+|+..-....... ...|++++|++. +++..||||.+|.+ ++.|++++...+.. .+-.++.|..
T Consensus 3 sa~lYry~iPmdsgviLR~r~----Lk~RdGl~V~l~-~~~r~gwGEIaPLPgFSqETleqAq~~a~~wl~~W~~g~~-- 75 (321)
T COG1441 3 SAQLYRYQIPMDAGVILRDRR----LKTRDGLYVCLR-EGEREGWGEIAPLPGFSQETLEQAQEQALAWLNNWLAGHD-- 75 (321)
T ss_pred ccceEEEecccccceeeehhh----hcccccEEEEEe-eCCcccccccCCCCCcCHHHHHHHHHHHHHHHHHHHccCC--
Confidence 567788888886654333322 245999999998 56789999999987 56677765544322 1222233321
Q ss_pred ccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCC
Q 041113 575 YFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNK 654 (983)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~ 654 (983)
+.....++..+|+.||+..+.+-.-. .+.+ ..-|. ..+
T Consensus 76 --------------------~~d~~~PSVAFGlScA~aEl~~~Lp~-------~~nY----------~~APL-----C~G 113 (321)
T COG1441 76 --------------------PLDPQMPSVAFGLSCALAELKGTLPE-------AANY----------RVAPL-----CTG 113 (321)
T ss_pred --------------------cccccCchhHHHHHHHHHHHhhhchh-------hcCc----------ccccC-----cCC
Confidence 11234678889999999888654211 1221 01121 457
Q ss_pred CHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhccc---CCCce
Q 041113 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD---CDLQY 731 (983)
Q Consensus 655 ~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~---~~i~~ 731 (983)
+|+++......+ .|-+.-|+|+|. ...-+|=-.+..+-+++ ||..||+|||.+||+..|..|++-... ..|.|
T Consensus 114 DPDeL~~~L~~m--pGeKvAKvKVGl-YEa~RDGmivnllLEai-PDL~LRLDANRaWtp~Ka~~FAkyV~p~~R~RIaF 189 (321)
T COG1441 114 DPDELYLKLADM--PGEKVAKVKVGL-YEAVRDGMIVNLLLEAI-PDLHLRLDANRAWTPLKAQQFAKYVNPDYRSRIAF 189 (321)
T ss_pred CHHHHHHHHhcC--Ccceeeeeeeee-eeccccchHHHHHHHhC-ccceeeecccccCChHHHHHHHHhcCHHHHHHHHH
Confidence 899888776665 699999999996 34456666777788898 999999999999999999999998865 36999
Q ss_pred eecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeC
Q 041113 732 IEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVS 811 (983)
Q Consensus 732 iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~ 811 (983)
+||||...++-+++++.++|-||-|||+.... |..-.+.|+..|+|||+.+|++.++.++++.|+++|+..+++
T Consensus 190 LEEPCkt~aeSr~Fa~eTgIAIAWDEs~read------F~~e~e~gv~avVIKPTL~GSl~r~~eli~qAh~lGl~AVIS 263 (321)
T COG1441 190 LEEPCKTRAESRAFARETGIAIAWDESLREAD------FAFEAEPGVRAVVIKPTLTGSLQRVRELVQQAHALGLTAVIS 263 (321)
T ss_pred HhcccCChHHHHHHHHhcCeeEeecchhcccc------cccccCCCceEEEecccchhhHHHHHHHHHHHHhcCceeEee
Confidence 99999988888999999999999999998742 443446788999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCC
Q 041113 812 AAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVT 864 (983)
Q Consensus 812 ~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~ 864 (983)
++.||++|+...+.+|+.+. |+...|+||..++..-++
T Consensus 264 SSiESSLGLtQLARiA~~lt---------------P~tvPGLDTldLm~aQ~~ 301 (321)
T COG1441 264 SSIESSLGLTQLARIAAWLT---------------PNTVPGLDTLDLMQAQVV 301 (321)
T ss_pred chhhhhcCHHHHHHHHHHhC---------------CCCCCCcchHhHhHHhhc
Confidence 99999999999999998753 466678888766655443
|
|
| >cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-26 Score=231.04 Aligned_cols=164 Identities=18% Similarity=0.260 Sum_probs=131.4
Q ss_pred HHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhc
Q 041113 259 PHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVG 338 (983)
Q Consensus 259 ~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA 338 (983)
..++++|++.+|++.+++.|.|...+ .+|... ..|.. ..+..++ +.|+||| ++|+|||+++|
T Consensus 2 ~~~~~~l~~~l~~d~ivv~d~G~~~~--~~~~~~-----~~~~~-----~~~~~~~----~~g~mG~--~lpaAiGaala 63 (188)
T cd03371 2 EDAIEIVLSRAPATAAVVSTTGMTSR--ELFELR-----DRPGG-----GHAQDFL----TVGSMGH--ASQIALGIALA 63 (188)
T ss_pred HHHHHHHHhhcCCCCEEEECCCcchH--HHHHhh-----cCCCC-----CccCcee----ecCcccc--HHHHHHHHHHh
Confidence 35789999999999999999998543 223211 01100 0012222 2399999 99999999999
Q ss_pred c-CceEEEEEccchhhhccchHHHHHhhccCC-CEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHH
Q 041113 339 C-NKHVLCVVGDISFLHDTNGLAILKQRMKRK-PILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLA 416 (983)
Q Consensus 339 ~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~l-pv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a 416 (983)
. +++||+|+|||+|+|+++||+|+++ |++ |+++||+||++|++++.. . ....++||.++|++
T Consensus 64 ~p~~~Vv~i~GDG~f~m~~~eL~ta~~--~~l~~i~ivV~NN~~yg~~~~~----------~----~~~~~~d~~~~A~a 127 (188)
T cd03371 64 RPDRKVVCIDGDGAALMHMGGLATIGG--LAPANLIHIVLNNGAHDSVGGQ----------P----TVSFDVSLPAIAKA 127 (188)
T ss_pred CCCCcEEEEeCCcHHHhhccHHHHHHH--cCCCCcEEEEEeCchhhccCCc----------C----CCCCCCCHHHHHHH
Confidence 9 8999999999999999999999998 886 799999999999997421 0 11246899999999
Q ss_pred cCCce-eeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccch
Q 041113 417 HGLNH-VQVKTKVELEEALSMSQHLGTDRVIEVESCIDANA 456 (983)
Q Consensus 417 ~G~~~-~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~ 456 (983)
||+.+ .+|++.+||+++|+++++.++|+||||.+++...+
T Consensus 128 ~G~~~~~~v~~~~el~~al~~a~~~~~p~lIev~~~~~~~~ 168 (188)
T cd03371 128 CGYRAVYEVPSLEELVAALAKALAADGPAFIEVKVRPGSRS 168 (188)
T ss_pred cCCceEEecCCHHHHHHHHHHHHhCCCCEEEEEEecCCCCC
Confidence 99997 58999999999999999889999999999987653
|
PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors. |
| >PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-27 Score=231.50 Aligned_cols=146 Identities=28% Similarity=0.323 Sum_probs=118.7
Q ss_pred hhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHh
Q 041113 286 LDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQ 364 (983)
Q Consensus 286 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~ 364 (983)
+.+|..+++++ .+|++|+ .+.++|+||+ ++|+|+|+++|. +++||+++|||+|+|+++||+|+++
T Consensus 5 ~~~~~~~~~~~-~~p~~~~-----------~~~~~g~mG~--~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~~el~ta~~ 70 (153)
T PF02775_consen 5 HTMWAAQYLRV-RRPRRFL-----------TSGGFGSMGY--ALPAAIGAALARPDRPVVAITGDGSFLMSLQELATAVR 70 (153)
T ss_dssp HHHHHHHHSCC-SSTTEEE-----------ESTTTT-TTT--HHHHHHHHHHHSTTSEEEEEEEHHHHHHHGGGHHHHHH
T ss_pred hHHHHHHhcCc-CCCCeEE-----------cCCCccccCC--HHHhhhHHHhhcCcceeEEecCCcceeeccchhHHHhh
Confidence 66677666664 5555554 3578899999 999999999998 9999999999999999999999999
Q ss_pred hccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeCCH--HHHHHHHHhhhccCC
Q 041113 365 RMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTK--VELEEALSMSQHLGT 442 (983)
Q Consensus 365 ~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~--~eL~~aL~~a~~~~~ 442 (983)
+++|+++||+||++|++++..+...... ..........+++||.++|++||+++.+|++. +||+++|+++++.++
T Consensus 71 --~~~~v~~vv~nN~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~~~g 147 (153)
T PF02775_consen 71 --YGLPVVIVVLNNGGYGMTGGQQTPFGGG-RFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALESGG 147 (153)
T ss_dssp --TTSSEEEEEEESSBSHHHHHHHHHTTST-CHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHHSSS
T ss_pred --ccceEEEEEEeCCcceEeccccccCcCc-ccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999997742111100 00011111356899999999999999999999 999999999999999
Q ss_pred CEEEEE
Q 041113 443 DRVIEV 448 (983)
Q Consensus 443 p~lIeV 448 (983)
|+||||
T Consensus 148 p~vIeV 153 (153)
T PF02775_consen 148 PAVIEV 153 (153)
T ss_dssp EEEEEE
T ss_pred cEEEEc
Confidence 999998
|
It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A .... |
| >PTZ00081 enolase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=241.59 Aligned_cols=307 Identities=17% Similarity=0.150 Sum_probs=204.3
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCC----------EEEEeecCcC------cCcccHHH
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGS----------VGYGEVAPLE------IHKENLLD 556 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~----------~G~GE~~~~~------~~~~~~~~ 556 (983)
|||++|+.+.+- .+. .+++|.|+|+|++|. +|++|+.... |.+..+..
T Consensus 2 ~~I~~v~~r~i~--------dSr--------g~ptvev~v~~~~G~~~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~ 65 (439)
T PTZ00081 2 STIKSIKAREIL--------DSR--------GNPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLK 65 (439)
T ss_pred cEEEEEEEEEEe--------cCC--------CCceEEEEEEECCCCEEEecccCCCCceeeEeeccCCCccccCCccHHH
Confidence 799999988862 222 268899999999998 9999984321 32333333
Q ss_pred -HHHHHHHHHhHhccCccccc---cccccc-CchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhc---C
Q 041113 557 -AEEQLRFLLHFMTGAKISYF---LPLLKG-SFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNIL---Y 628 (983)
Q Consensus 557 -~~~~l~~~~~~l~g~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lL---G 628 (983)
+....+.+.|.|+|+++.+. ..++.. .+.+.. ..++....+...|+.|+++|+|++.|+..|+|||++| |
T Consensus 66 Av~~v~~~i~~~LiG~d~~dq~~iD~~l~~~ldgt~n--~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~ 143 (439)
T PTZ00081 66 AVENVNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKN--EWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLA 143 (439)
T ss_pred HHHHHHHHHHHHHcCCChhhHHHHHHHHHHhccCCcc--cccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhc
Confidence 33333568999999998763 223322 211110 0011112234688999999999999999999999999 5
Q ss_pred CCCccccccccccceeEEEEeecCC-------------------CCHHHHH-------HHHHHhhhc--CCCEEEEeccC
Q 041113 629 PLTEIDEEISKRSTSIKICALIDSN-------------------KSPVEVA-------SIATTLVEE--GFTAIKLKVAR 680 (983)
Q Consensus 629 g~~~~~~~~~~~~~~i~~~~~~~~~-------------------~~~~~~~-------~~~~~~~~~--G~~~~KiKig~ 680 (983)
|... . ...-++|++..++++ .+..+.+ ..+++.++. |... .-+|.
T Consensus 144 g~~~--~---~~~lP~P~~niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgd 216 (439)
T PTZ00081 144 GKPT--D---KFVLPVPCFNVINGGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDA--TNVGD 216 (439)
T ss_pred CCcc--C---CccccceeEEeccCcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--ccccc
Confidence 5410 0 012446777644321 1111111 122222211 3321 12221
Q ss_pred ----CCChHHHHHHHHHHHHHcC-----CCcEEEEEcCC------------------------CCCHHHHHHHH-hhccc
Q 041113 681 ----RADPIKDAEVIQEVRKKVG-----HRIELRVDANR------------------------NWTYQEALEFG-FLIKD 726 (983)
Q Consensus 681 ----~~~~~~d~~~v~~vr~~~g-----~~~~l~vDaN~------------------------~~~~~~a~~~~-~~l~~ 726 (983)
.++.+.+.+.++.+++++. +++.|.+|+.. .+|.++.+++. +.+++
T Consensus 217 eGgfap~~~~~eeal~ll~eAi~~ag~~~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~ 296 (439)
T PTZ00081 217 EGGFAPNIKDPEEALDLLVEAIKKAGYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKK 296 (439)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHcCCcCceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhc
Confidence 1133455666777777664 56888888733 25666666654 57899
Q ss_pred CCCceeecCCC--ChHHHHHHHhhc--CCcEEeCCCc-cCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHH
Q 041113 727 CDLQYIEEPVQ--NEEDIIKYCEES--GLPVALDETI-DKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARW 800 (983)
Q Consensus 727 ~~i~~iEeP~~--~~~~~~~l~~~~--~ipIa~dEs~-~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~ 800 (983)
|++.|||||++ |+++|++|++++ .+||++||.. .+.. .+...++. .++++++|++++||||++++++++
T Consensus 297 y~I~~IEDPl~~~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~-----~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~l 371 (439)
T PTZ00081 297 YPIVSIEDPFDQDDWEAYAKLTAAIGQKVQIVGDDLLVTNPT-----RIKKAIEKKACNALLLKVNQIGTVTEAIEAAKL 371 (439)
T ss_pred CCcEEEEcCCCcccHHHHHHHHHhhCCCceEEcCCcccCCHH-----HHHHHHHhCCCCEEEeccccccCHHHHHHHHHH
Confidence 99999999998 899999999999 8999999985 4443 35566654 479999999999999999999999
Q ss_pred HHHcCCcEEeCCCC-chHHHHHHHHHHHhhch
Q 041113 801 AQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 801 A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~ 831 (983)
|+++|+.++++|.. ||- -...+|||.++.
T Consensus 372 A~~~Gi~~iishrsgETe--d~~iadLAVa~~ 401 (439)
T PTZ00081 372 AQKNGWGVMVSHRSGETE--DTFIADLVVGLG 401 (439)
T ss_pred HHHcCCcEEEeCCCchhH--HHHHHHHHHHcC
Confidence 99999999998887 655 456668887765
|
|
| >cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-25 Score=226.39 Aligned_cols=163 Identities=21% Similarity=0.196 Sum_probs=133.1
Q ss_pred CCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhh
Q 041113 256 LTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGF 335 (983)
Q Consensus 256 ~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGa 335 (983)
....-++++|++.+|++.+|+.|.|. +.+|... | ... ..++|+||+ ++|+|+|+
T Consensus 10 c~~~~~~~~l~~~l~~~~iv~~D~G~----~~~~~~~-------~----------~~~---~~~~g~mG~--gl~~AiGa 63 (178)
T cd02008 10 CPHRPSFYALRKAFKKDSIVSGDIGC----YTLGALP-------P----------LNA---IDTCTCMGA--SIGVAIGM 63 (178)
T ss_pred CCChHHHHHHHHHhcCCeEEecCcCc----ccccccC-------C----------hhh---ccccccCcc--HHHHHhhH
Confidence 45567899999999999999999998 5556532 1 111 136899999 99999999
Q ss_pred hhcc-CceEEEEEccchhhhc-cchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHH
Q 041113 336 AVGC-NKHVLCVVGDISFLHD-TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNL 413 (983)
Q Consensus 336 alA~-~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~l 413 (983)
++|. +++||+|+|||+|+|+ ++||.|+++ |++|+++||+||++|++++..+... ..+ .......++||+++
T Consensus 64 ~la~p~~~Vv~i~GDG~f~~~g~~eL~ta~~--~~l~i~vvV~nN~~~g~~~~~~~~~----~~~-~~~~~~~~~d~~~~ 136 (178)
T cd02008 64 AKASEDKKVVAVIGDSTFFHSGILGLINAVY--NKANITVVILDNRTTAMTGGQPHPG----TGK-TLTEPTTVIDIEAL 136 (178)
T ss_pred HhhCCCCCEEEEecChHHhhccHHHHHHHHH--cCCCEEEEEECCcceeccCCCCCCC----Ccc-cccCCCCccCHHHH
Confidence 9999 9999999999999999 699999998 9999999999999999987532211 000 11122246899999
Q ss_pred HHHcCCceeeeCCHHHHH---HHHHhhhccCCCEEEEEEcC
Q 041113 414 CLAHGLNHVQVKTKVELE---EALSMSQHLGTDRVIEVESC 451 (983)
Q Consensus 414 a~a~G~~~~~v~~~~eL~---~aL~~a~~~~~p~lIeV~~~ 451 (983)
|++||+++.+|++.+||+ ++|+++++.++|.||+|...
T Consensus 137 a~a~G~~~~~v~~~~~l~~~~~al~~a~~~~gp~lI~v~~~ 177 (178)
T cd02008 137 VRAIGVKRVVVVDPYDLKAIREELKEALAVPGVSVIIAKRP 177 (178)
T ss_pred HHHCCCCEEEecCccCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 999999999999988888 88899988899999999753
|
IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA. |
| >cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-25 Score=223.83 Aligned_cols=165 Identities=16% Similarity=0.076 Sum_probs=126.2
Q ss_pred HHHHHHHh--hcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhh
Q 041113 260 HVAHELSR--ALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAV 337 (983)
Q Consensus 260 ~~~~~l~~--~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaal 337 (983)
.+.+++.+ ..|++++++.|.|. + .|..++++ ....+|+||+ ++|+|||+++
T Consensus 13 ~~~~~~~~~~~~~~d~ii~~D~G~----~-~~~~~~~~--------------------~~~~~g~mG~--glpaAiGa~l 65 (193)
T cd03375 13 ALAKALAELGIDPEKVVVVSGIGC----S-SRLPYYFN--------------------TYGFHTLHGR--ALAVATGVKL 65 (193)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCh----h-ceehhhcc--------------------ccchhhhhcc--HHHHHHHHHH
Confidence 34444443 24778899999998 3 34433322 1234599999 9999999999
Q ss_pred cc-CceEEEEEccch-hhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC-CCCcccccccccc-CCCCCHHHH
Q 041113 338 GC-NKHVLCVVGDIS-FLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD-RTEPRILDQYFYT-THNISIQNL 413 (983)
Q Consensus 338 A~-~~~vv~i~GDGs-f~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~-~~~~~~~~~~~~~-~~~~df~~l 413 (983)
|+ +++||+|+|||| |+|++|||+|+++ |++|+++||+||++|++++..+... ..........++. .+.+||.++
T Consensus 66 a~p~r~Vv~i~GDGs~f~m~~~eL~ta~~--~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i 143 (193)
T cd03375 66 ANPDLTVIVVSGDGDLAAIGGNHFIHAAR--RNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLAL 143 (193)
T ss_pred hCCCCeEEEEeccchHhhccHHHHHHHHH--hCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHH
Confidence 99 999999999999 6899999999999 9999999999999999997532111 0000000111111 235899999
Q ss_pred HHHcCCcee---eeCCHHHHHHHHHhhhccCCCEEEEEEcCcc
Q 041113 414 CLAHGLNHV---QVKTKVELEEALSMSQHLGTDRVIEVESCID 453 (983)
Q Consensus 414 a~a~G~~~~---~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~ 453 (983)
|++||+++. +|++++||+++|+++++.++|+||||.++.-
T Consensus 144 A~a~G~~~~~~~~v~~~~el~~al~~al~~~gp~vIev~~~C~ 186 (193)
T cd03375 144 ALAAGATFVARGFSGDIKQLKEIIKKAIQHKGFSFVEVLSPCP 186 (193)
T ss_pred HHHCCCCEEEEEecCCHHHHHHHHHHHHhcCCCEEEEEECCCC
Confidence 999999984 7999999999999999999999999998754
|
In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity. |
| >cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-25 Score=220.25 Aligned_cols=156 Identities=16% Similarity=0.211 Sum_probs=127.8
Q ss_pred HHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhc
Q 041113 259 PHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVG 338 (983)
Q Consensus 259 ~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA 338 (983)
..+++.|++.+| +++++.|.|+. ..+.... . ..|++ ++ .+|+||+ ++|+|+|+++|
T Consensus 2 ~~~~~~l~~~~~-~~~vv~d~G~~----~~~~~~~-~--~~~~~----------~~----~~g~mG~--~lp~AiGaala 57 (179)
T cd03372 2 RDAIKTLIADLK-DELVVSNIGFP----SKELYAA-G--DRPLN----------FY----MLGSMGL--ASSIGLGLALA 57 (179)
T ss_pred HHHHHHHHHhCC-CCeEEeCCCHh----HHHHHHc-c--Ccccc----------cc----cccchhh--HHHHHHHHHhc
Confidence 467899999999 99999999983 2221111 0 12222 11 3799999 99999999999
Q ss_pred cCceEEEEEccchhhhccchHHHHHhhccCC-CEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHHc
Q 041113 339 CNKHVLCVVGDISFLHDTNGLAILKQRMKRK-PILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAH 417 (983)
Q Consensus 339 ~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~l-pv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~ 417 (983)
..++|||++|||+|+|+++||+|+++ +++ |+++||+||++|+++...+ ....+++||.++|++|
T Consensus 58 ~~~~vv~i~GDG~f~m~~~el~ta~~--~~~~~l~vvV~NN~~~~~~~~~~-------------~~~~~~~d~~~lA~a~ 122 (179)
T cd03372 58 QPRKVIVIDGDGSLLMNLGALATIAA--EKPKNLIIVVLDNGAYGSTGNQP-------------THAGKKTDLEAVAKAC 122 (179)
T ss_pred CCCcEEEEECCcHHHhCHHHHHHHHH--cCCCCEEEEEEcCccccccCCCC-------------CCCCCCCCHHHHHHHc
Confidence 76899999999999999999999998 885 7999999999999984310 0122479999999999
Q ss_pred CCceeeeC-CHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 418 GLNHVQVK-TKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 418 G~~~~~v~-~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
|+++.+|+ +.+||+++|++++ ++|+||||.+++++.
T Consensus 123 G~~~~~v~~~~~el~~al~~a~--~gp~lIev~~~~~~~ 159 (179)
T cd03372 123 GLDNVATVASEEAFEKAVEQAL--DGPSFIHVKIKPGNT 159 (179)
T ss_pred CCCeEEecCCHHHHHHHHHHhc--CCCEEEEEEEcCCCC
Confidence 99999999 9999999999998 899999999988664
|
M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors. |
| >cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=228.32 Aligned_cols=181 Identities=11% Similarity=0.026 Sum_probs=139.9
Q ss_pred CCCHHHHHHHHHhhcC--CCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeE-eecCCCCCccchHHH
Q 041113 255 SLTEPHVAHELSRALT--SNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRV-AGNRGASGIDGLLST 331 (983)
Q Consensus 255 ~~~~~~~~~~l~~~l~--~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~G~mG~~g~lpa 331 (983)
.+...-++++|.+.++ ++.+++.|.|. +.+|..++... ..|+ .++.. ..+.|+||+ |+|+
T Consensus 10 gc~~~~~~~~l~~~l~~p~d~ivv~d~G~----~~~~~~~~~~~-~~~~----------~~~~~~~~~~g~mG~--Glpa 72 (237)
T cd02018 10 GCGEVTAVRVVLAALPAPEDTVIANSTGC----SSVYASTAPFN-SWAV----------PWVNSLFEDANAVAS--GLKR 72 (237)
T ss_pred CCCcHHHHHHHHHHhCCCCCEEEEeCCCc----cceecccCcCc-ccCC----------CeeeccccCHHHHHH--HHHH
Confidence 3566778999999999 99999999999 77777665221 1222 22221 124599999 9999
Q ss_pred HHhhhhc-----c-CceEEEEEccchhh-hccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC-CCCcc-cccccc
Q 041113 332 AIGFAVG-----C-NKHVLCVVGDISFL-HDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD-RTEPR-ILDQYF 402 (983)
Q Consensus 332 aiGaalA-----~-~~~vv~i~GDGsf~-~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~-~~~~~-~~~~~~ 402 (983)
||||++| . +++||+|+|||+|+ |++|+|+|+++ +++|+++||+||++|++.+..+... ..... ......
T Consensus 73 AiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g~~~l~ta~~--~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~ 150 (237)
T cd02018 73 GLKARFPKDRELDKKKDVVVIGGDGATYDIGFGALSHSLF--RGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAG 150 (237)
T ss_pred HHHhhcccccccCCCCcEEEEeCchHHHhccHHHHHHHHH--cCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCC
Confidence 9999999 7 89999999999997 89999999998 9999999999999999875321110 00000 000111
Q ss_pred ccCCCCCHHHHHHHcCCceee---eCCHHHHHHHHHhhhc-cCCCEEEEEEcCccc
Q 041113 403 YTTHNISIQNLCLAHGLNHVQ---VKTKVELEEALSMSQH-LGTDRVIEVESCIDA 454 (983)
Q Consensus 403 ~~~~~~df~~la~a~G~~~~~---v~~~~eL~~aL~~a~~-~~~p~lIeV~~~~~~ 454 (983)
....++||+++|++||+.+++ |+++++|+++|+++++ .++|+||||.++...
T Consensus 151 ~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v~i~c~~ 206 (237)
T cd02018 151 KKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHAYTPCIT 206 (237)
T ss_pred CcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 123569999999999999986 9999999999999997 999999999988654
|
Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors. |
| >cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=225.92 Aligned_cols=178 Identities=11% Similarity=0.018 Sum_probs=135.4
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcC----CCcccccccccccccCCCCCcceeEeecCCCCCccchHH
Q 041113 255 SLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGR----NWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLS 330 (983)
Q Consensus 255 ~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lp 330 (983)
......+++.|++.+|++.+++.|+|. +..|.. .+++. ..+.++ .++.|+||+ |+|
T Consensus 10 gC~~~~~~~~l~~~lp~d~iiv~D~G~----~~~~~~~~~~~~~~~-~~~~~~-------------~~~~gsmG~--Glp 69 (235)
T cd03376 10 GCGAALALRHVLKALGPDTVVVNPTGC----LEVITTPYPYTAWRV-PWIHVA-------------FENAAAVAS--GIE 69 (235)
T ss_pred CCccHHHHHHHHHHhhcCeEEEeCCCc----ccccCCcCCCccccc-cceehh-------------hcCHHHHHH--HHH
Confidence 366788999999999999999999998 444332 22221 111111 234479999 999
Q ss_pred HHHhhhhcc-CceEEEEEccch-hhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCC-CCccccccccc----
Q 041113 331 TAIGFAVGC-NKHVLCVVGDIS-FLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADR-TEPRILDQYFY---- 403 (983)
Q Consensus 331 aaiGaalA~-~~~vv~i~GDGs-f~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~-~~~~~~~~~~~---- 403 (983)
+|||++++. +++||+++|||+ |+|++|||+|+++ +++|+++||+||++|++......... .........++
T Consensus 70 aAiGa~~a~p~r~VV~i~GDG~~~~m~~~eL~ta~~--~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~ 147 (235)
T cd03376 70 AALKALGRGKDITVVAFAGDGGTADIGFQALSGAAE--RGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSF 147 (235)
T ss_pred HHHHHhccCCCCeEEEEEcCchHHhhHHHHHHHHHH--cCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCcccc
Confidence 999999998 999999999999 5899999999999 99999999999999997543211100 00000000111
Q ss_pred --cCCCCCHHHHHHHcCCcee---eeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 404 --TTHNISIQNLCLAHGLNHV---QVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 404 --~~~~~df~~la~a~G~~~~---~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
....+||.++|++||++++ +|++++||+++|+++++.++|+||||.++.-.
T Consensus 148 ~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~~~gP~lIev~~~C~~ 203 (235)
T cd03376 148 GKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALSIEGPAYIHILSPCPT 203 (235)
T ss_pred ccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence 2245899999999999986 59999999999999999999999999998753
|
PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity. |
| >cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-24 Score=216.56 Aligned_cols=166 Identities=23% Similarity=0.254 Sum_probs=133.1
Q ss_pred HHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhcc-
Q 041113 261 VAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC- 339 (983)
Q Consensus 261 ~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~- 339 (983)
+++.|.+.++++++++.|+|. ...|...++.. .+|.++ ....++|+||+ ++|+|+|++++.
T Consensus 2 ~~~~l~~~~~~~~~i~~d~g~----~~~~~~~~~~~-~~~~~~-----------~~~~~~g~~G~--~~~~a~Gaa~a~~ 63 (168)
T cd00568 2 VLAALRAALPEDAIVVNDAGN----SAYWAYRYLPL-RRGRRF-----------LTSTGFGAMGY--GLPAAIGAALAAP 63 (168)
T ss_pred HHHHHHHHCCCCCEEEeCCcH----HHHHHHHheee-CCCCcE-----------EeCCCchhhhh--hHHHHHHHHHhCC
Confidence 577899999999999999998 33333332221 222222 23577899999 999999999999
Q ss_pred CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCC
Q 041113 340 NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGL 419 (983)
Q Consensus 340 ~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~ 419 (983)
+++|++++|||+|+|+++||+|+++ +++|+++||+||++|++++..+.... .........+.+||.+++++||+
T Consensus 64 ~~~vv~~~GDG~~~~~~~~l~ta~~--~~~~~~~iv~nN~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~~~a~~~G~ 137 (168)
T cd00568 64 DRPVVCIAGDGGFMMTGQELATAVR--YGLPVIVVVFNNGGYGTIRMHQEAFY----GGRVSGTDLSNPDFAALAEAYGA 137 (168)
T ss_pred CCcEEEEEcCcHHhccHHHHHHHHH--cCCCcEEEEEECCccHHHHHHHHHHc----CCCcccccCCCCCHHHHHHHCCC
Confidence 8999999999999999999999998 99999999999999999865321100 01111223357899999999999
Q ss_pred ceeeeCCHHHHHHHHHhhhccCCCEEEEEEc
Q 041113 420 NHVQVKTKVELEEALSMSQHLGTDRVIEVES 450 (983)
Q Consensus 420 ~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~ 450 (983)
++.+|++++||+++++++++.++|+||||.+
T Consensus 138 ~~~~v~~~~~l~~a~~~a~~~~~p~~i~v~~ 168 (168)
T cd00568 138 KGVRVEDPEDLEAALAEALAAGGPALIEVKT 168 (168)
T ss_pred eEEEECCHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 9999999999999999999889999999975
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. |
| >PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-23 Score=220.66 Aligned_cols=172 Identities=15% Similarity=0.100 Sum_probs=133.5
Q ss_pred CCCCHHHHHHHHHhh--cCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHH
Q 041113 254 YSLTEPHVAHELSRA--LTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLST 331 (983)
Q Consensus 254 ~~~~~~~~~~~l~~~--l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpa 331 (983)
..+.+..++++|.+. ++++.+++.|.|. +..+.. ++. + ....++||+ |+|+
T Consensus 24 ~~i~~~~v~~al~e~~~~~~d~ivvsdiGc----~~~~~~-~~~--------------~------~~~~~~~G~--alPa 76 (277)
T PRK09628 24 DGVILKSIIRAIDKLGWNMDDVCVVSGIGC----SGRFSS-YVN--------------C------NTVHTTHGR--AVAY 76 (277)
T ss_pred CchHHHHHHHHHHHhcCCCCCEEEEeCcCH----HHHhhc-cCC--------------C------Cceeecccc--HHHH
Confidence 457789999999998 5888999999998 332221 211 1 122258999 9999
Q ss_pred HHhhhhcc-CceEEEEEccchhhh-ccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC-CCCcccccccccc-CCC
Q 041113 332 AIGFAVGC-NKHVLCVVGDISFLH-DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD-RTEPRILDQYFYT-THN 407 (983)
Q Consensus 332 aiGaalA~-~~~vv~i~GDGsf~~-~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~-~~~~~~~~~~~~~-~~~ 407 (983)
|+|+++|+ +++||+++|||+|+| +.+|+.|++| +++|+++||+||+.||+++..+... ..........++. .++
T Consensus 77 AiGaklA~Pdr~VV~i~GDG~f~~~g~~el~ta~r--~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~ 154 (277)
T PRK09628 77 ATGIKLANPDKHVIVVSGDGDGLAIGGNHTIHGCR--RNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPT 154 (277)
T ss_pred HHHHHHHCCCCeEEEEECchHHHHhhHHHHHHHHH--hCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCC
Confidence 99999999 999999999999974 8899999999 9999999999999999987422110 0000001011111 356
Q ss_pred CCHHHHHHHcCCcee---eeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 408 ISIQNLCLAHGLNHV---QVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 408 ~df~~la~a~G~~~~---~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
+||.++|++||+.++ +|++++||+++|+++++.+||+||||.++...
T Consensus 155 ~D~~~lA~a~G~~~va~~~v~~~~el~~al~~Al~~~Gp~lIeV~~~c~~ 204 (277)
T PRK09628 155 FDACKLATAAGASFVARESVIDPQKLEKLLVKGFSHKGFSFFDVFSNCHI 204 (277)
T ss_pred CCHHHHHHHCCCceEEEEccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 799999999999984 89999999999999999999999999999874
|
|
| >PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-22 Score=215.04 Aligned_cols=168 Identities=15% Similarity=0.057 Sum_probs=129.7
Q ss_pred CCHHHHHHHHHhh-c-CCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHH
Q 041113 256 LTEPHVAHELSRA-L-TSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAI 333 (983)
Q Consensus 256 ~~~~~~~~~l~~~-l-~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaai 333 (983)
+-...++++|.+. + |++.+++.|.|. +. +...++. +.+..|+||+ ++|+|+
T Consensus 28 ~i~~~i~~al~~l~l~p~d~vivsdiG~----s~-~~~~yl~--------------------~~~~~g~mG~--alpaAi 80 (301)
T PRK05778 28 GILNAIIQALAELGLDPDKVVVVSGIGC----SS-KIPGYFL--------------------SHGLHTLHGR--AIAFAT 80 (301)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCcH----hh-hhhhhcc--------------------cCccchhhcc--HHHHHH
Confidence 4456777888876 4 778888999998 32 2222211 2233489999 999999
Q ss_pred hhhhcc-CceEEEEEccchh-hhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCC-Ccccccccccc-CCCCC
Q 041113 334 GFAVGC-NKHVLCVVGDISF-LHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRT-EPRILDQYFYT-THNIS 409 (983)
Q Consensus 334 GaalA~-~~~vv~i~GDGsf-~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~-~~~~~~~~~~~-~~~~d 409 (983)
|+++|+ +++||+++|||+| +|++|||+|++| +|+|+++||+||++||+++........ ........++. ..++|
T Consensus 81 GaklA~pd~~VV~i~GDG~~~~mg~~eL~tA~r--~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d 158 (301)
T PRK05778 81 GAKLANPDLEVIVVGGDGDLASIGGGHFIHAGR--RNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPID 158 (301)
T ss_pred HHHHHCCCCcEEEEeCccHHHhccHHHHHHHHH--HCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCC
Confidence 999999 9999999999997 599999999999 999999999999999999753111000 00000001111 24689
Q ss_pred HHHHHHHcCCcee---eeCCHHHHHHHHHhhhccCCCEEEEEEcCc
Q 041113 410 IQNLCLAHGLNHV---QVKTKVELEEALSMSQHLGTDRVIEVESCI 452 (983)
Q Consensus 410 f~~la~a~G~~~~---~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~ 452 (983)
|.++|+++|+.++ ++.++++|+++|+++++.+||+||||.++.
T Consensus 159 ~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~~~GpalIeV~~~C 204 (301)
T PRK05778 159 PCALALAAGATFVARSFAGDVKQLVELIKKAISHKGFAFIDVLSPC 204 (301)
T ss_pred HHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 9999999999987 799999999999999999999999999885
|
|
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-22 Score=220.92 Aligned_cols=167 Identities=20% Similarity=0.288 Sum_probs=135.3
Q ss_pred CCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhh
Q 041113 256 LTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGF 335 (983)
Q Consensus 256 ~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGa 335 (983)
+++..+++.|.+.++++++|+.+.|...+. +|.......-..|+ .++ ..|+||+ ++|+|+|+
T Consensus 172 ~~r~~ai~~i~~~l~~~~iVV~~~G~~s~e--l~~~~~~~~~~~~~----------~f~----~~GsMG~--a~p~AlG~ 233 (361)
T TIGR03297 172 MTREEAIAAILDHLPDNTVIVSTTGKTSRE--LYELRDRIGQGHAR----------DFL----TVGSMGH--ASQIALGL 233 (361)
T ss_pred CCHHHHHHHHHHhCCCCCEEEECCCCCcHH--HHHhhcccccCCCC----------ceE----eechhhh--HHHHHHHH
Confidence 899999999999999999999999985443 23221100000022 222 2499999 99999999
Q ss_pred hhcc-CceEEEEEccchhhhccchHHHHHhhccCC-CEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHH
Q 041113 336 AVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRK-PILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNL 413 (983)
Q Consensus 336 alA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~l-pv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~l 413 (983)
++|. +++||||+|||+|+|+++||.|+++ +++ |+++||+||++|+++... . ....++||.++
T Consensus 234 ala~p~r~Vv~i~GDGsflm~~~eL~t~~~--~~~~nli~VVlNNg~~~~~g~q----------~----~~~~~~d~~~i 297 (361)
T TIGR03297 234 ALARPDQRVVCLDGDGAALMHMGGLATIGT--QGPANLIHVLFNNGAHDSVGGQ----------P----TVSQHLDFAQI 297 (361)
T ss_pred HHHCCCCCEEEEEChHHHHHHHHHHHHHHH--hCCCCeEEEEEcCccccccCCc----------C----CCCCCCCHHHH
Confidence 9998 9999999999999999999999998 886 899999999999876321 0 11246999999
Q ss_pred HHHcCC-ceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccch
Q 041113 414 CLAHGL-NHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANA 456 (983)
Q Consensus 414 a~a~G~-~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~ 456 (983)
|++||+ .+.+|++.+||+++|+++.+.++|+||||.+++...+
T Consensus 298 A~a~G~~~~~~v~~~~eL~~al~~a~~~~gp~lIeV~v~~g~~~ 341 (361)
T TIGR03297 298 AKACGYAKVYEVSTLEELETALTAASSANGPRLIEVKVRPGSRA 341 (361)
T ss_pred HHHCCCceEEEeCCHHHHHHHHHHHHhCCCcEEEEEEecCCCcc
Confidence 999996 6899999999999999999889999999999986543
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.4e-22 Score=210.85 Aligned_cols=170 Identities=16% Similarity=0.098 Sum_probs=132.1
Q ss_pred CCCHHHHHHHHHhhc------CCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecC-CCCCccc
Q 041113 255 SLTEPHVAHELSRAL------TSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNR-GASGIDG 327 (983)
Q Consensus 255 ~~~~~~~~~~l~~~l------~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-G~mG~~g 327 (983)
.+....+++.|.+.+ |++.+++.|.|. +..+.. + + .+.++ |+||+
T Consensus 22 GCg~~~il~~l~~al~~l~~~p~d~vvvsdiGc----~~~~~~-~--------------------~-~~~~~~g~mG~-- 73 (286)
T PRK11867 22 GCGDGSILAALQRALAELGLDPENVAVVSGIGC----SGRLPG-Y--------------------I-NTYGFHTIHGR-- 73 (286)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCcEEEEeCCcc----ccccCc-c--------------------c-cccchhhhhhc--
Confidence 355567888888888 788999999998 333221 1 1 12344 89999
Q ss_pred hHHHHHhhhhcc-CceEEEEEccch-hhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC-CCCcccccccccc
Q 041113 328 LLSTAIGFAVGC-NKHVLCVVGDIS-FLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD-RTEPRILDQYFYT 404 (983)
Q Consensus 328 ~lpaaiGaalA~-~~~vv~i~GDGs-f~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~-~~~~~~~~~~~~~ 404 (983)
|+|+|+|+++|+ +++||+++|||+ |+|+++||+|++| +|+|+++||+||++||+++...... ..........++.
T Consensus 74 alpaAiGaklA~Pd~~VV~i~GDG~~f~mg~~eL~tA~r--~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~ 151 (286)
T PRK11867 74 ALAIATGLKLANPDLTVIVVTGDGDALAIGGNHFIHALR--RNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGS 151 (286)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCccHHHhCCHHHHHHHHH--hCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCC
Confidence 999999999999 999999999995 9999999999999 9999999999999999997531110 0000000011121
Q ss_pred -CCCCCHHHHHHHcCCceee---eCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 405 -THNISIQNLCLAHGLNHVQ---VKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 405 -~~~~df~~la~a~G~~~~~---v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
.+++||.++|+++|+.++. +.+++||+++|+++++.++|+||||.++.-.
T Consensus 152 ~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~~~Gp~lIev~~~C~~ 205 (286)
T PRK11867 152 IEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAINHKGFSFVEILQPCPT 205 (286)
T ss_pred CCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCC
Confidence 2358999999999998873 7799999999999999999999999998754
|
|
| >PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-21 Score=205.51 Aligned_cols=158 Identities=14% Similarity=0.058 Sum_probs=121.7
Q ss_pred hcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEE
Q 041113 268 ALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCV 346 (983)
Q Consensus 268 ~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i 346 (983)
.+|++.+++.|.|. +..+. .++. ..+..+.||+ ++|+|+|+++|+ +++||++
T Consensus 32 ~~p~d~ivvsdiG~----~~~~~-~~~~--------------------~~~~~~~mG~--alp~AiGaklA~pd~~VVai 84 (280)
T PRK11869 32 LKPRQVVIVSGIGQ----AAKMP-HYIN--------------------VNGFHTLHGR--AIPAATAVKATNPELTVIAE 84 (280)
T ss_pred CCCCCEEEEeCchH----hhhHH-HHcc--------------------CCCCCccccc--HHHHHHHHHHHCCCCcEEEE
Confidence 45778899999888 33331 1211 1244477999 999999999999 9999999
Q ss_pred Eccchhhhc-cchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCC-Ccccccccccc-CCCCCHHHHHHHcCCceee
Q 041113 347 VGDISFLHD-TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRT-EPRILDQYFYT-THNISIQNLCLAHGLNHVQ 423 (983)
Q Consensus 347 ~GDGsf~~~-~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~-~~~~~~~~~~~-~~~~df~~la~a~G~~~~~ 423 (983)
+|||+|+|. +|||+|++| +|+|+++||+||++|++++........ .........+. ...+||.++|+++|+.++.
T Consensus 85 ~GDG~~~~iG~~eL~tA~r--~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va 162 (280)
T PRK11869 85 GGDGDMYAEGGNHLIHAIR--RNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVA 162 (280)
T ss_pred ECchHHhhCcHHHHHHHHH--hCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEE
Confidence 999999976 999999999 999999999999999998642211000 00000001122 2358999999999999988
Q ss_pred ---eCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 424 ---VKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 424 ---v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
+.++++|+++|++|++.+||+||||.+..-.
T Consensus 163 ~~~~~~~~~l~~~i~~Al~~~Gp~lIeV~~pC~~ 196 (280)
T PRK11869 163 RTFSGDIEETKEILKEAIKHKGLAIVDIFQPCVS 196 (280)
T ss_pred EeCCCCHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence 8899999999999999999999999988643
|
|
| >PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.3e-21 Score=201.19 Aligned_cols=170 Identities=17% Similarity=0.081 Sum_probs=129.1
Q ss_pred CCHHHHHHHHHhhc------CCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchH
Q 041113 256 LTEPHVAHELSRAL------TSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLL 329 (983)
Q Consensus 256 ~~~~~~~~~l~~~l------~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~l 329 (983)
+....++..|++.+ |++.+++.|.|. +. |...++. ++...|+||+ ++
T Consensus 13 Cg~~~il~al~~al~~l~~~~~~~ivvsdiGc----~~-~~~~~~~--------------------~~~~~~~~G~--al 65 (279)
T PRK11866 13 CGNYGILEALRKALAELGIPPENVVVVSGIGC----SS-NLPEFLN--------------------TYGIHGIHGR--VL 65 (279)
T ss_pred CCChHHHHHHHHHHHHhcCCCCCEEEEECCch----hh-hhhhhcc--------------------CCCccccccc--HH
Confidence 45566667777666 778888999998 33 3332222 1234589999 99
Q ss_pred HHHHhhhhcc-CceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCC-CccccccccccC-
Q 041113 330 STAIGFAVGC-NKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRT-EPRILDQYFYTT- 405 (983)
Q Consensus 330 paaiGaalA~-~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~-~~~~~~~~~~~~- 405 (983)
|+|+|+++|+ +++||+++||| +|+|++|||.|++| +|+|+++||+||+.||+.+........ ........++..
T Consensus 66 p~A~GaklA~Pd~~VV~i~GDG~~f~ig~~eL~tA~r--rn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~ 143 (279)
T PRK11866 66 PIATGVKWANPKLTVIGYGGDGDGYGIGLGHLPHAAR--RNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIE 143 (279)
T ss_pred HHHHHHHHHCCCCcEEEEECChHHHHccHHHHHHHHH--HCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCC
Confidence 9999999999 99999999999 79999999999999 899999999999999999743211100 000000111111
Q ss_pred CCCCHHHHHHHcCCceeee---CCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 406 HNISIQNLCLAHGLNHVQV---KTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v---~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
..+||.++|+++|+.++.. .++++|.++|++|++.+||++|||....-.
T Consensus 144 ~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~~~Gps~I~v~~pC~~ 195 (279)
T PRK11866 144 EPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIKHKGFSFIDVLSPCVT 195 (279)
T ss_pred CCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCC
Confidence 2359999999999987655 789999999999999999999999987643
|
|
| >TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=200.50 Aligned_cols=158 Identities=13% Similarity=0.096 Sum_probs=118.5
Q ss_pred hcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEE
Q 041113 268 ALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCV 346 (983)
Q Consensus 268 ~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i 346 (983)
..|++.+++.|.|.. .. . | +++...+..++||+ ++|+|+|+++|+ +++||++
T Consensus 25 ~~p~d~iivsdiGc~----~~-~---------~-----------~~l~~~~~~t~mG~--alPaAiGaklA~Pd~~VVai 77 (287)
T TIGR02177 25 LDPEQVVVVSGIGCS----AK-T---------P-----------HYVNVNGFHGLHGR--ALPVATGIKLANPHLKVIVV 77 (287)
T ss_pred CCCCCEEEEECCCcc----cc-c---------C-----------CeEecCCccccccc--HHHHHHHHHHHCCCCcEEEE
Confidence 346788899999982 11 1 1 12222233356899 999999999999 9999999
Q ss_pred Eccchhh-hccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCC-cccccccccc---CCCCCHHHHHHHcCCce
Q 041113 347 VGDISFL-HDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTE-PRILDQYFYT---THNISIQNLCLAHGLNH 421 (983)
Q Consensus 347 ~GDGsf~-~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~-~~~~~~~~~~---~~~~df~~la~a~G~~~ 421 (983)
+|||+|+ |+++||.|++| +|+|+++||+||+.||+++......... .......++. +.+++|..+|+++|+.+
T Consensus 78 ~GDG~f~~mg~~eL~tA~r--~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va 155 (287)
T TIGR02177 78 GGDGDLYGIGGNHFVAAGR--RNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVA 155 (287)
T ss_pred eCchHHHhccHHHHHHHHH--hCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEE
Confidence 9999986 99999999999 8999999999999999997532111000 0000000111 23677888999998877
Q ss_pred ee-eCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 422 VQ-VKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 422 ~~-v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
.. +.++++|+++|++|++.+||+||||.+..-.
T Consensus 156 ~~~~~~~~eL~~ai~~Al~~~GpslIeV~~pC~t 189 (287)
T TIGR02177 156 RGFSGDVAHLKEIIKEAINHKGYALVDILQPCVT 189 (287)
T ss_pred EEecCCHHHHHHHHHHHHhCCCCEEEEEeCCCCC
Confidence 76 6999999999999999999999999988543
|
Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes. |
| >PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-22 Score=191.29 Aligned_cols=135 Identities=19% Similarity=0.233 Sum_probs=116.7
Q ss_pred HHHHHHHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCcc
Q 041113 76 MAEVLELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSES 154 (983)
Q Consensus 76 i~~~~~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~ 154 (983)
|++++++|.+||||+|++|.+++ .++.+++++|+|++|+||++|++ + ||+||++||+| +|..|..+++..
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~-~------kg~i~~~hp~~--~G~~g~~~~~~~ 71 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPM-G------KGVIPEDHPLF--LGYLGLFGSPAA 71 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGG-G------TTSSTTTSTTE--EEESCGGSCHHH
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCc-c------ccccCCCCchh--cccCCccCCHHH
Confidence 57899999999999999999876 45678999999999999999998 5 89999999996 788887777777
Q ss_pred ccccCCCCEEEEeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHH
Q 041113 155 VKDWIQFDVIIQIGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFL 219 (983)
Q Consensus 155 ~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L 219 (983)
...+++||+||++|+++++..+.++...+.+ .++||||.|+.++++++.+++.+++|++.+|++|
T Consensus 72 ~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 72 NEALEQADLVLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp HHHHHHSSEEEEESSSSSTTTTTTTTGCSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred HHHhcCCCEEEEECCCCccccccccccccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 7888999999999999987676654344444 3799999999999999999999999999999986
|
It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C .... |
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-20 Score=223.08 Aligned_cols=168 Identities=16% Similarity=0.166 Sum_probs=134.7
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHh
Q 041113 255 SLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIG 334 (983)
Q Consensus 255 ~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiG 334 (983)
......++++|++.+|++.+++.|.|. +.+|.. .|.+ .+ ..+|+||+ ++|+|+|
T Consensus 361 GCp~~~~~~~l~~~l~~d~ivv~D~G~----~~~~~~-------~p~~----------~~---~~~~~mG~--~~~~AiG 414 (595)
T TIGR03336 361 GCPHRATFYAMKKVADREAIFPSDIGC----YTLGIQ-------PPLG----------TV---DTTLCMGA--SIGVASG 414 (595)
T ss_pred CCCChHHHHHHHHhccCCcEEecCcch----hhcccc-------CCcc----------cc---ceeeccCc--hHHHHhh
Confidence 366778999999999999999999998 444431 1211 22 22489999 9999999
Q ss_pred hhhcc-CceEEEEEccchhhhc-cchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHH
Q 041113 335 FAVGC-NKHVLCVVGDISFLHD-TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQN 412 (983)
Q Consensus 335 aalA~-~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~ 412 (983)
+++|. +++||+++|||+|+|+ ++||+|+++ +++|+++||+||++|++++..+... ..+.......+++||++
T Consensus 415 a~~a~p~~~Vv~i~GDG~f~~~g~~eL~tav~--~~~~i~~vVlnN~~~g~~~~q~~~~----~~~~~~~~~~~~~d~~~ 488 (595)
T TIGR03336 415 LSKAGEKQRIVAFIGDSTFFHTGIPGLINAVY--NKANITVVILDNRITAMTGHQPNPG----TGVTGMGEATKEISIEE 488 (595)
T ss_pred hhhcCCCCCEEEEeccchhhhcCHHHHHHHHH--cCCCeEEEEEcCcceeccCCCCCCC----CCCCCCCCcCCCcCHHH
Confidence 99999 9999999999999997 999999999 9999999999999999987532111 01111111235799999
Q ss_pred HHHHcCCceeeeCCH---HHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 413 LCLAHGLNHVQVKTK---VELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 413 la~a~G~~~~~v~~~---~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
+|++||+++.+|.++ +|+.++|+++++.++|+||++..+...
T Consensus 489 ia~a~G~~~~~v~~~~~l~~l~~al~~a~~~~gp~li~v~~~C~l 533 (595)
T TIGR03336 489 LCRASGVEFVEVVDPLNVKETIEVFKAALAAEGVSVIIAKQPCVL 533 (595)
T ss_pred HHHHcCCCEEEEeCcCCHHHHHHHHHHHHhcCCCEEEEEcccCcc
Confidence 999999999999988 456899999998899999999887653
|
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. |
| >PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5 | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-18 Score=159.53 Aligned_cols=115 Identities=18% Similarity=0.283 Sum_probs=90.1
Q ss_pred eEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHH-HHHhHhccCccc
Q 041113 496 CRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLR-FLLHFMTGAKIS 574 (983)
Q Consensus 496 ~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~-~~~~~l~g~~~~ 574 (983)
++|+++.+++||+ ||.++.++. ..++.++|||+|++|++||||+.+.+...+ .+...+. .+.|.++|+++.
T Consensus 2 ~ev~v~~v~~~l~-Pf~~a~~t~----~~~~~v~V~l~t~~G~~G~Ge~~~~~~~~~---~~~~~~~~~l~~~l~g~~~~ 73 (117)
T PF02746_consen 2 IEVRVRHVPLPLK-PFKTARGTV----SEREFVLVRLETDDGVVGWGEAFPSPGTAE---TVASALEDYLAPLLIGQDPD 73 (117)
T ss_dssp EEEEEEEEEEEEE-EEEETTEEE----EEEEEEEEEEEETTSEEEEEEEESSSSSHH---HHHHHHHHTHHHHHTTSBTT
T ss_pred EEEEEEEeccCcC-CEEeeCEEE----EEeEEEEEEEEECCCCEEEEEeeCCcchhH---HHHHHHHHHHHHHHhcCCHH
Confidence 5788889999999 999999865 458999999999999999999988754222 2333333 488999999988
Q ss_pred ccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcC
Q 041113 575 YFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILY 628 (983)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLG 628 (983)
.+..++.. +.... ...++|++|||+||||++||.+|+|||+|||
T Consensus 74 ~~~~~~~~-----~~~~~-----~~~~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 74 DIEDIWQE-----LYRLI-----KGNPAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp GHHHHHHH-----HHHHT-----SSHHHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred HHHHHHHH-----HHHhc-----cchHHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 76554431 11111 1278999999999999999999999999998
|
1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A .... |
| >TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-16 Score=175.41 Aligned_cols=150 Identities=19% Similarity=0.150 Sum_probs=121.4
Q ss_pred eecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhhc--cchHHHHHhhccCCCEEEEEEeCCCCccccCCCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLHD--TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPI 389 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~~--~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~ 389 (983)
.+..+++|+ ++|.|+|+++|. +++|||++|||+|+|+ .++|.|+++ +++|+++||+||+ |++....
T Consensus 118 ~g~~~~vG~--~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~--~~LPvi~Vv~NN~-~~~~~~~-- 190 (341)
T TIGR03181 118 LPPNIPIGT--QYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGV--FKAPVVFFVQNNQ-WAISVPR-- 190 (341)
T ss_pred cCCCchHhc--chhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhc--cCCCEEEEEECCC-Cccccch--
Confidence 455578888 999999999985 6899999999999998 588999998 9999999999996 6654210
Q ss_pred CCCCCccccccccccCCCCCHHHHHHHcCCceeeeCCHHHH------HHHHHhhhccCCCEEEEEEcCccc---------
Q 041113 390 ADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVEL------EEALSMSQHLGTDRVIEVESCIDA--------- 454 (983)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL------~~aL~~a~~~~~p~lIeV~~~~~~--------- 454 (983)
.. ....+||.++|++||+++.+|+..+++ +++++++++.++|+||||.+.+..
T Consensus 191 --------~~----~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~~gH~~~D~~~ 258 (341)
T TIGR03181 191 --------SK----QTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTADDPT 258 (341)
T ss_pred --------hh----hhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeecCCCCCCCCCCc
Confidence 00 113579999999999999999998886 888888888899999999987610
Q ss_pred ------------------------------chHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 455 ------------------------------NATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 455 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
....+.++.+++.+.+..++..+..++.|+.
T Consensus 259 ~YR~~~e~~~~~~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~a~~~p~P~~ 319 (341)
T TIGR03181 259 RYRTKEEEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALALPPPPV 319 (341)
T ss_pred cCCCHHHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 1334445667788889999999998888875
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.2e-16 Score=169.48 Aligned_cols=151 Identities=15% Similarity=0.184 Sum_probs=117.9
Q ss_pred EeecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhhcc--chHHHHHhhccCCCEEEEEEeCCCCccccCCC
Q 041113 316 VAGNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLHDT--NGLAILKQRMKRKPILMLVINNHGGAIFSLLP 388 (983)
Q Consensus 316 ~~~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~~~--~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~ 388 (983)
+.++.|+||+ ++|.|+|+++|. ++.||+++|||+|++.. .+|.++.. +++|+++||+||+ |++....
T Consensus 105 ~~~~~g~~G~--~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~--~~lPvi~vv~NN~-yg~s~~~- 178 (315)
T TIGR03182 105 FYGGHGIVGA--QVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAAL--WKLPVIFVIENNL-YAMGTSV- 178 (315)
T ss_pred cccCcCcccc--cccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhc--cCcCEEEEEEcCC-ccccCCH-
Confidence 4577899999 999999999996 67999999999998653 66999988 9999999999995 9987432
Q ss_pred CCCCCCccccccccccCCCCCHHHHHHHcCCceeeeCCHH--H----HHHHHHhhhccCCCEEEEEEcCcc---------
Q 041113 389 IADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKV--E----LEEALSMSQHLGTDRVIEVESCID--------- 453 (983)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~--e----L~~aL~~a~~~~~p~lIeV~~~~~--------- 453 (983)
.. ....+||.++|++||+++++|+..+ + +++|++++.+.++|+||||.+.+-
T Consensus 179 ----------~~---~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~ 245 (315)
T TIGR03182 179 ----------ER---SSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHSMSDPA 245 (315)
T ss_pred ----------HH---HhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCCCCCcc
Confidence 00 1135799999999999999999744 4 455555555678999999998761
Q ss_pred -----------------------------cchHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 454 -----------------------------ANATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 454 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
-+...+.++.+++.+.+.+++..+.+.+.|+.
T Consensus 246 ~Yr~~~e~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a~~~p~p~~ 306 (315)
T TIGR03182 246 KYRSKEEVEEWRKRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPEPPV 306 (315)
T ss_pred ccCCHHHHHHHHhcCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 01333445667777888888888888887764
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >COG0148 Eno Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=154.47 Aligned_cols=297 Identities=20% Similarity=0.198 Sum_probs=192.9
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCc-----------------ccHH-
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHK-----------------ENLL- 555 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~-----------------~~~~- 555 (983)
+|++|..+.+- .+.+ .+++-|+|+|++|..|++ +.|.+++. ..+.
T Consensus 3 ~I~~i~aReIl--------DSRG--------npTVEveV~~~~g~~g~a-~vPSGAStG~~EavElrdgd~ry~gkGV~~ 65 (423)
T COG0148 3 AIEDVIAREIL--------DSRG--------NPTVEVEVTLEDGFGGRA-AVPSGASTGEHEAVELRDGDSRYLGKGVLK 65 (423)
T ss_pred ccceeEEEEEE--------cCCC--------CceEEEEEEEcCCCccee-ecCCCCCCCCceeEEecCCccccccccHHH
Confidence 78888887762 2222 688999999999999988 34443221 1111
Q ss_pred HHHHHHHHHHhHhccCcccc---cccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCc
Q 041113 556 DAEEQLRFLLHFMTGAKISY---FLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTE 632 (983)
Q Consensus 556 ~~~~~l~~~~~~l~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~ 632 (983)
.+...-..++|.|+|.+..+ +..++...+.+..++ .+...++-||.+|+--+.|..+|+|||++|||...
T Consensus 66 AV~nVn~~Iap~LiG~da~dQ~~ID~~lielDGT~Nks-------~lGaNailgVSlAvAkAAA~~l~~PLy~YlGG~~a 138 (423)
T COG0148 66 AVANVNEIIAPALIGLDATDQALIDSLLIELDGTENKS-------KLGANAILGVSLAVAKAAAASLGIPLYRYLGGLNA 138 (423)
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCCCccc-------ccccHHHHHHHHHHHHHHHHhcCCcHHHHhcCccc
Confidence 23333356889999988765 333333332222222 23467889999999999999999999999999641
Q ss_pred cccccccccceeEEEEeecCCC----------------CHH----------HHHHHHHHhh-hcCCCEEEEeccCC----
Q 041113 633 IDEEISKRSTSIKICALIDSNK----------------SPV----------EVASIATTLV-EEGFTAIKLKVARR---- 681 (983)
Q Consensus 633 ~~~~~~~~~~~i~~~~~~~~~~----------------~~~----------~~~~~~~~~~-~~G~~~~KiKig~~---- 681 (983)
...++|+...++++. ..+ ++-..+.+++ +.|..+- +|..
T Consensus 139 -------~~lPvPm~NvinGG~HA~n~~d~QEFmI~p~ga~sf~ealr~~~ev~h~lk~~l~~~g~~t~---vGDEGgfA 208 (423)
T COG0148 139 -------LVLPVPMMNVINGGAHADNNLDIQEFMIMPVGAESFKEALRAGAEVFHHLKKLLKEKGLSTG---VGDEGGFA 208 (423)
T ss_pred -------cccccceeeeecccccCCCCccceeEEEeecChHHHHHHHHHHHHHHHHHHHHHhhcCcccc---ccCCcccC
Confidence 134567666553211 111 1222222222 2344333 2321
Q ss_pred CCh---HHHHHHH-HHHHHH---cCCCcEEEEEcCC--------------CCCHHHHHHHHhhc-ccCCCceeecCCC--
Q 041113 682 ADP---IKDAEVI-QEVRKK---VGHRIELRVDANR--------------NWTYQEALEFGFLI-KDCDLQYIEEPVQ-- 737 (983)
Q Consensus 682 ~~~---~~d~~~v-~~vr~~---~g~~~~l~vDaN~--------------~~~~~~a~~~~~~l-~~~~i~~iEeP~~-- 737 (983)
++. ++-++.+ +++.++ .|.++.|.+|+-. .+|.++-+++...| ++|+|..||+|+.
T Consensus 209 P~l~~~eeald~i~~Aie~agy~~g~~i~~alD~Aasefy~~~~Y~~~~~~~~~~e~i~~~~~Lv~~YpivsiEDpl~E~ 288 (423)
T COG0148 209 PNLKSNEEALDILVEAIEEAGYEPGEDIALALDVAASEFYKDGKYVLEGESLTSEELIEYYLELVKKYPIVSIEDPLSED 288 (423)
T ss_pred CCCCccHHHHHHHHHHHHHhCCCCCcceeeeehhhhhhhccCCeeeecCcccCHHHHHHHHHHHHHhCCEEEEcCCCCch
Confidence 122 2333433 333332 2456888999732 34555666666555 8899999999999
Q ss_pred ChHHHHHHHhhcC--CcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC
Q 041113 738 NEEDIIKYCEESG--LPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF 814 (983)
Q Consensus 738 ~~~~~~~l~~~~~--ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~ 814 (983)
||+++++|.+..+ +.|++|.-..+-. ..++.-++.+ ++.+-+|+..+|.+|++++.+.+|+++|+..+++|..
T Consensus 289 Dweg~~~lt~~~g~kvqivGDDLfvTN~----~~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~gy~~viSHRS 364 (423)
T COG0148 289 DWEGFAELTKRLGDKVQIVGDDLFVTNP----KRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAGYTAVISHRS 364 (423)
T ss_pred hHHHHHHHHHhhCCeEEEECCcceecCH----HHHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCCCeEEEecCC
Confidence 8999999999887 6888888766632 3566667666 5889999999999999999999999999999999965
Q ss_pred -chHHHHHHHHHHHhhc
Q 041113 815 -ESGLGLSAYIIFSSYL 830 (983)
Q Consensus 815 -es~ig~~a~~~laa~~ 830 (983)
||-=.+-| |||-++
T Consensus 365 GETeD~tIA--dLAVa~ 379 (423)
T COG0148 365 GETEDTTIA--DLAVAT 379 (423)
T ss_pred CCcccchHH--HHHHHh
Confidence 44333333 444443
|
|
| >CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=167.02 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=119.4
Q ss_pred ecCCCCCccchHHHHHhhhhcc------------CceEEEEEccchhhhccc---hHHHHHhhccCCCEEEEEEeCC-CC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC------------NKHVLCVVGDISFLHDTN---GLAILKQRMKRKPILMLVINNH-GG 381 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~------------~~~vv~i~GDGsf~~~~~---eL~Ta~~~~~~lpv~iiV~NN~-g~ 381 (983)
+++|+||+ ++|.|+|+++|. ++.|||++|||+|+ ..+ +|.|+++ +++|+++||.||+ ++
T Consensus 125 ~~~g~lG~--~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~-~G~~~Ealn~A~~--~~LPvifvv~NN~~~i 199 (341)
T CHL00149 125 GGFAFIGE--GIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTN-NGQFFECLNMAVL--WKLPIIFVVENNQWAI 199 (341)
T ss_pred CCChhhhc--cHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhh-hcHHHHHHHHHhh--cCCCEEEEEEeCCeee
Confidence 67799999 999999999993 67899999999997 444 6899998 9999999999999 56
Q ss_pred ccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeCCHHHH------HHHHHhhhccCCCEEEEEEcCcc--
Q 041113 382 AIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVEL------EEALSMSQHLGTDRVIEVESCID-- 453 (983)
Q Consensus 382 g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL------~~aL~~a~~~~~p~lIeV~~~~~-- 453 (983)
++.... . ...+||.++|++||+.+.+|+..+.+ ++|++++.+.++|+||||.|.+-
T Consensus 200 ~~~~~~---------~-------~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIev~tyR~~g 263 (341)
T CHL00149 200 GMAHHR---------S-------TSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTLIEALTYRFRG 263 (341)
T ss_pred ecchhh---------e-------eCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEEecCCC
Confidence 554210 0 12579999999999999999988764 77888888889999999999540
Q ss_pred ------------------------------------cchHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 454 ------------------------------------ANATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 454 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
-+...+.++.+++.+.+..++.++.+++.|+.
T Consensus 264 Hs~~D~~~YR~~~e~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~ 331 (341)
T CHL00149 264 HSLADPDELRSKQEKEAWVARDPIKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPEPNI 331 (341)
T ss_pred cCCCCCccCCCHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 12344556778888889999999999988875
|
|
| >cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.5e-15 Score=160.03 Aligned_cols=119 Identities=18% Similarity=0.159 Sum_probs=103.5
Q ss_pred ecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
...|+||+ |+|+|+|+++|. +++|+|++|||+|++ +.++|.|+.+ +++|.+++|+||++|++....
T Consensus 102 ~~~GslG~--gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~--~~l~~li~vvdnN~~~~~~~~--- 174 (255)
T cd02012 102 VTTGSLGQ--GLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGH--YKLDNLIAIVDSNRIQIDGPT--- 174 (255)
T ss_pred eCCcchhh--HHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHH--cCCCcEEEEEECCCccccCcH---
Confidence 45599999 999999999984 689999999999998 6899999999 999999999999999875321
Q ss_pred CCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhhcc-CCCEEEEEEcCccc
Q 041113 391 DRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQHL-GTDRVIEVESCIDA 454 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~~~-~~p~lIeV~~~~~~ 454 (983)
. ......||.+++++||+++.+|+ +.++|.++|+++.+. ++|++|+|.|.+..
T Consensus 175 -------~----~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~t~kg~ 230 (255)
T cd02012 175 -------D----DILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAKTIKGK 230 (255)
T ss_pred -------h----hccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEEeeccc
Confidence 0 11245799999999999999999 999999999999876 89999999998754
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. |
| >cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.5e-15 Score=160.60 Aligned_cols=118 Identities=22% Similarity=0.252 Sum_probs=97.1
Q ss_pred EeecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhhc--cchHHHHHhhccCCCEEEEEEeCCCCccccCCC
Q 041113 316 VAGNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLHD--TNGLAILKQRMKRKPILMLVINNHGGAIFSLLP 388 (983)
Q Consensus 316 ~~~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~~--~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~ 388 (983)
+.++.|+||+ ++|+|+|+++|. +++||+++|||+|+|+ .++|.|+++ +++|+++||.||+ |++....
T Consensus 99 ~~~~~g~lG~--~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~--~~lPvi~vv~NN~-~~i~~~~- 172 (293)
T cd02000 99 FFGGNGIVGG--QVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAAL--WKLPVIFVCENNG-YAISTPT- 172 (293)
T ss_pred cccccccccc--chhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHh--hCCCEEEEEeeCC-eeccCCH-
Confidence 3577799999 999999999985 6899999999999987 367999998 9999999999985 9886431
Q ss_pred CCCCCCccccccccccCCCCCHHHHHHHcCCceeeeCC--HHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 389 IADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKT--KVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~--~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
+. ....+||.+++++||+++.+|+. ++++.+++++++ +.++|+||||.+.+
T Consensus 173 ----------~~---~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r 229 (293)
T cd02000 173 ----------SR---QTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYR 229 (293)
T ss_pred ----------HH---HhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Confidence 00 01458999999999999999984 567777777665 55899999999876
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). |
| >PRK08350 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-13 Score=142.96 Aligned_cols=285 Identities=14% Similarity=0.089 Sum_probs=186.9
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC----cCcccHH-HHHHHHHHHHhH
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE----IHKENLL-DAEEQLRFLLHF 567 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~----~~~~~~~-~~~~~l~~~~~~ 567 (983)
++|++|..+.+- .+.| .++|-|+|+|++| .|.+-+.... |. ..+. .+...-..+.|.
T Consensus 2 ~~I~~i~aReIl--------DSRG--------nPTVEveV~~~~g-~gra~vPSD~d~~ry~-~gV~~AV~nVn~~Iap~ 63 (341)
T PRK08350 2 TVIENIIGRVAV--------LRGG--------KYSVEVDVITDSG-FGRFAAPIDENPSLYI-AEAHRAVSEVDEIIGPE 63 (341)
T ss_pred ceeEEEEEEEEE--------cCCC--------CceEEEEEEECCc-EEEEEecCCCCccccc-chHHHHHHHHHHHHHHH
Confidence 479999988762 2332 6889999999999 7877443211 22 2222 233333458999
Q ss_pred hccCcccc---cccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCcccccccccccee
Q 041113 568 MTGAKISY---FLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSI 644 (983)
Q Consensus 568 l~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i 644 (983)
|+|.++.+ +..++...+.+..++. +...|+-|+.+|+.-+.|...|+|||++|||... ..-++
T Consensus 64 LiG~d~~dQ~~ID~~mielDGT~nKs~-------lGaNAiLavS~A~akAaA~~~~~PLy~ylgg~~~-------~~lPv 129 (341)
T PRK08350 64 LIGFDASEQELIDSYLWEIDGTEDFSH-------IGANTALAVSVAVAKAAANSKNMPLYSYIGGTFT-------TELPV 129 (341)
T ss_pred HcCCCHHHHHHHHHHHHhccCCccccc-------cCchhhHHHHHHHHHHHHHHcCCcHHHHhcCCCC-------CccCc
Confidence 99998875 3334433333322222 2357889999999999999999999999988431 13456
Q ss_pred EEEEeecCCCC-----HHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcC----CCcEEEEEcCCCCCHH
Q 041113 645 KICALIDSNKS-----PVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVG----HRIELRVDANRNWTYQ 715 (983)
Q Consensus 645 ~~~~~~~~~~~-----~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g----~~~~l~vDaN~~~~~~ 715 (983)
|+...++++.- |.+..+-++ =|..+|--+-. +.++-++.+...-+..| .++.+.+|+...+|.+
T Consensus 130 P~~NiiNGG~~EFmI~p~ea~~~~e-----v~~~lk~il~~--~~eeaL~ll~eAi~~aGy~~g~dv~~~lD~~~~~t~~ 202 (341)
T PRK08350 130 PILEFAEDENFEYYVLVRDLMEITD-----VVDAVNKILEN--SKEVSLEGLSKASEKAGDELGLEVALGIAQKREMETE 202 (341)
T ss_pred cceeeecCCceEEEECchHhhhhHH-----HHHHHHHHHhh--ChHHHHHHHHHHHHHhCCCccccEEEeeccCCCCCHH
Confidence 76666543311 111111111 12222211111 34455555544444444 4688999997558888
Q ss_pred HHHHHHhhcccCCCceeecCCCChHHHHHHHhh-cCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHH
Q 041113 716 EALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEE-SGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENA 794 (983)
Q Consensus 716 ~a~~~~~~l~~~~i~~iEeP~~~~~~~~~l~~~-~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~ 794 (983)
+.+ +.+++|+|.+|| |+.+.++|++|.++ ..+.|.+|.-..+-.. . ....|+.+.+|+..+|.+|++
T Consensus 203 eli---~l~~kYPIvsIE-p~~E~~gw~~lt~~g~~iqiVGDDLfvTN~~-----~---~~~~~NaiLiK~NQIGTltEt 270 (341)
T PRK08350 203 KVL---NLVEDNNIAYIK-PIGDEELFLELIAGTHGVFIDGEYLFRTRNI-----L---DRRYYNALSIKPINLGTLTDL 270 (341)
T ss_pred HHH---HHHHHCCEEEEE-cCCcchHHHHHHhcCCceEEEcccccccChh-----H---hhCccceEEEeeccceeHHHH
Confidence 877 667899999999 99933999999877 3478999988777321 1 233468899999999999999
Q ss_pred HHHHHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhc
Q 041113 795 GLIARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYL 830 (983)
Q Consensus 795 ~~~~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~ 830 (983)
++.+.+|+++|+.++++|-. ||-=.. .+|||-++
T Consensus 271 ~~ai~~A~~~g~~~vvSHRSGETeD~~--IAdLaVa~ 305 (341)
T PRK08350 271 YNLVNDVKSERITPILAEAKYESADEA--LPHLAVGL 305 (341)
T ss_pred HHHHHHHHHcCCeEEeecCCCCCcchh--HHHHHHHh
Confidence 99999999999999999976 443333 34444443
|
|
| >PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5 | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-15 Score=124.93 Aligned_cols=65 Identities=35% Similarity=0.680 Sum_probs=61.3
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeC
Q 041113 690 VIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALD 756 (983)
Q Consensus 690 ~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~d 756 (983)
||+++|+++||++.|++|+|++||.++|+++++.|+++ .|||||++ +++++++|++++++||++|
T Consensus 1 ri~avr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~--~~iEeP~~~~d~~~~~~l~~~~~~pia~d 67 (67)
T PF01188_consen 1 RIRAVREAVGPDIDLMVDANQAWTLEEAIRLARALEDY--EWIEEPLPPDDLDGLAELRQQTSVPIAAD 67 (67)
T ss_dssp HHHHHHHHHSTTSEEEEE-TTBBSHHHHHHHHHHHGGG--SEEESSSSTTSHHHHHHHHHHCSSEEEES
T ss_pred CHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHcChh--heeecCCCCCCHHHHHHHHHhCCCCEEeC
Confidence 68999999999999999999999999999999999995 99999999 6899999999999999987
|
1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C .... |
| >PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-15 Score=139.90 Aligned_cols=102 Identities=24% Similarity=0.354 Sum_probs=81.5
Q ss_pred CCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhh
Q 041113 756 DETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQN 834 (983)
Q Consensus 756 dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~ 834 (983)
||+++++.+ ++++++.+ +|++|+|++++|||+++++++++|+++|++++++++ +++|+.++++|++++++|+.
T Consensus 1 gE~~~~~~~-----~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~i~~aa~~hlaaa~~~~~ 74 (111)
T PF13378_consen 1 GESLFSLHD-----FRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESGIGLAASLHLAAALPNCD 74 (111)
T ss_dssp STTSSSHHH-----HHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSHHHHHHHHHHHHTSTTBS
T ss_pred CCCCCCHHH-----HHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCcHHHHHHHHHHHhcCCCC
Confidence 799998764 66666555 699999999999999999999999999999998887 99999999999999998631
Q ss_pred hhhhhhccccCCCCCccCccchhcccccCCC---CCceee----ccCC-CCeeeEE
Q 041113 835 AYLCKVMNRELCPPVAQGLGTYQWLKEDVTT---DPISIC----HNSC-RGFVEAS 882 (983)
Q Consensus 835 ~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~---~p~~~~----~~P~-~pGlGv~ 882 (983)
+..++++.+|++. +|+. + .+|+ +||||||
T Consensus 75 ------------------~~e~~~~~~dl~~~~~~p~~-~~G~v~vp~~~PGlGve 111 (111)
T PF13378_consen 75 ------------------WLEYPYFEEDLVTGPPEPLV-ENGRVTVPDDGPGLGVE 111 (111)
T ss_dssp ------------------EEEEGGGTHHSBSSSSSSEE-ETTEEEGGSSSSBTSBE
T ss_pred ------------------cccccchhhhhcCCCCCcee-ECCEEECCCCCCcccCC
Confidence 1111444467666 3555 5 3999 9999996
|
... |
| >PLN02374 pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=154.85 Aligned_cols=150 Identities=19% Similarity=0.173 Sum_probs=117.1
Q ss_pred EeecCCCCCccchHHHHHhhhhcc------------CceEEEEEccchhhhc--cchHHHHHhhccCCCEEEEEEeCC-C
Q 041113 316 VAGNRGASGIDGLLSTAIGFAVGC------------NKHVLCVVGDISFLHD--TNGLAILKQRMKRKPILMLVINNH-G 380 (983)
Q Consensus 316 ~~~~~G~mG~~g~lpaaiGaalA~------------~~~vv~i~GDGsf~~~--~~eL~Ta~~~~~~lpv~iiV~NN~-g 380 (983)
+.+++|.||+ ++|.|+|+++|. ++.|+|++|||+++.. ..+|.+++. +++|+++||.||+ +
T Consensus 189 ~~g~~g~lG~--~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~--~~LPvIfVV~NN~ya 264 (433)
T PLN02374 189 LLGGFAFIGE--GIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAAL--WKLPIVFVVENNLWA 264 (433)
T ss_pred CCCCceeccC--chhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHH--hCCCEEEEEeCCCEe
Confidence 3577789999 999999999993 5789999999999754 348999998 9999999998887 4
Q ss_pred CccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeCCHHHH------HHHHHhhhccCCCEEEEEEcCcc-
Q 041113 381 GAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVEL------EEALSMSQHLGTDRVIEVESCID- 453 (983)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL------~~aL~~a~~~~~p~lIeV~~~~~- 453 (983)
++.... . ....+|+.+.|++||+++++|+..+.+ +++++++.+.++|+|||+.+.+-
T Consensus 265 ig~~~~-----------~-----~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~LIe~~tyR~~ 328 (433)
T PLN02374 265 IGMSHL-----------R-----ATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 328 (433)
T ss_pred ecceee-----------e-----ccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEecC
Confidence 444311 0 013579999999999999999977655 57778787788999999998541
Q ss_pred -------------------------------------cchHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 454 -------------------------------------ANATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 454 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
-....+.++.+++++.+.+++..+.+++.|+.
T Consensus 329 GHs~~D~~~YR~~~e~~~~~~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~ 397 (433)
T PLN02374 329 GHSLADPDELRDPAEKAHYAARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPLPPR 397 (433)
T ss_pred CcCCCCccccCCHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 02344456677888889999999988887764
|
|
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-13 Score=162.90 Aligned_cols=117 Identities=14% Similarity=0.189 Sum_probs=102.3
Q ss_pred ecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhhhcc-ch-HHHHHhhccCCCEEEEEEeCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFLHDT-NG-LAILKQRMKRKPILMLVINNHG 380 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~~~~-~e-L~Ta~~~~~~lpv~iiV~NN~g 380 (983)
...|+||+ |+|+|+|+++|. +++|+|++|||+|+|+. +| |.|+++ +++|.+++|+|||+
T Consensus 115 ~~~G~lG~--gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~--~~L~~li~v~dnN~ 190 (624)
T PRK05899 115 TTTGPLGQ--GLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGH--LKLGNLIVIYDDNR 190 (624)
T ss_pred eCCcchhh--hHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHH--hCCCCEEEEEECCC
Confidence 45799999 999999999985 46899999999999985 55 999998 99999999999999
Q ss_pred CccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhhccCCCEEEEEEcCcc
Q 041113 381 GAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQHLGTDRVIEVESCID 453 (983)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~~~~~p~lIeV~~~~~ 453 (983)
|++.... .. ....||..++++||+++.+|+ +.++|.++|+++.+.++|++|+|.|.+.
T Consensus 191 ~~~~~~~-----------~~----~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~~~~P~vI~v~t~kg 250 (624)
T PRK05899 191 ISIDGPT-----------EG----WFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKASTKPTLIIAKTIIG 250 (624)
T ss_pred Ccccccc-----------cc----cccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHhcCCCEEEEEEeEec
Confidence 9886321 11 124799999999999999999 9999999999998888999999999763
|
|
| >PTZ00378 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.6e-10 Score=127.88 Aligned_cols=305 Identities=12% Similarity=0.035 Sum_probs=180.5
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCE-----EEEeecCcC-------c-CcccHHHHHH
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSV-----GYGEVAPLE-------I-HKENLLDAEE 559 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~-----G~GE~~~~~-------~-~~~~~~~~~~ 559 (983)
++|++|..+.+- .+.| +++|-|+|++++|.. -.||+.-.. + .+..+.....
T Consensus 49 ~~I~~i~areIl--------DSrG--------nPTVev~v~l~~G~~vPSGAStGEA~elRDgd~~~~~g~gkgV~~Av~ 112 (518)
T PTZ00378 49 DEIRALVHNEVL--------SPAG--------ETVLRFTLELLNGMEVSSGALLSPSHGERDGEADATLDPAEYTTEALQ 112 (518)
T ss_pred CeeeEEEEEEEE--------cCCC--------CeeEEEEEEECCCCEECCCCcccceeeeecCCcccccCCCccHHHHHH
Confidence 579999988872 2222 678888999999843 012443221 1 1112222122
Q ss_pred HHHHHHhHhccCcccc---cccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccc
Q 041113 560 QLRFLLHFMTGAKISY---FLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEE 636 (983)
Q Consensus 560 ~l~~~~~~l~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~ 636 (983)
..+.|.|+|.++.+ +...+...+.+.... .+..+++-|+.+|+.-+.|+..++|||++||+.......
T Consensus 113 --~~i~p~Lig~~~~dQ~~iD~~Li~lDGT~nks-------~lGaNailavS~A~akAAA~~~~~PLy~yL~~~~~~~~~ 183 (518)
T PTZ00378 113 --NSYFPRLLQLGARDQREFDSTLRAALSTSPLA-------NVGSAVQWALSIVASLAAARCRSVPLFQYLRALFGSLTS 183 (518)
T ss_pred --hhhHHHHcCCChHhHHHHHHHHHHhcCCCccc-------chhhHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccccc
Confidence 56899999988765 223332222222111 234678999999999999999999999999873100000
Q ss_pred cccccceeEEEEeecC---------------------CCCHHHHHHHHHHh---hhcCCCEEEEeccCC-----C---Ch
Q 041113 637 ISKRSTSIKICALIDS---------------------NKSPVEVASIATTL---VEEGFTAIKLKVARR-----A---DP 684 (983)
Q Consensus 637 ~~~~~~~i~~~~~~~~---------------------~~~~~~~~~~~~~~---~~~G~~~~KiKig~~-----~---~~ 684 (983)
.....-++|+...+++ +.+..+..+...+. +..|+. .-+|.. . +.
T Consensus 184 ~~~~~lP~P~~NiinGG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh~L~~~~~---t~vGDEGGfaap~~~~~ 260 (518)
T PTZ00378 184 VETFSMPQLCITFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHHFCQSHN---SSVRSDGSLHWDGFANL 260 (518)
T ss_pred CCCcccCccceEeecCccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHHHHhhccc---CccCCCcCcCCCCCCCH
Confidence 0000122333222211 02222222211111 111221 112210 1 23
Q ss_pred HHHHHHHHHHHHHcC----CCcEEEEEcC--C--------------------------------CCCHHHHHHHHhhc-c
Q 041113 685 IKDAEVIQEVRKKVG----HRIELRVDAN--R--------------------------------NWTYQEALEFGFLI-K 725 (983)
Q Consensus 685 ~~d~~~v~~vr~~~g----~~~~l~vDaN--~--------------------------------~~~~~~a~~~~~~l-~ 725 (983)
++-++.|...-+..| .++.|-+|+- . ..|.+|.+++.+.+ +
T Consensus 261 eeAL~li~eAi~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~~~~~~~t~~elieyy~~li~ 340 (518)
T PTZ00378 261 TDAVKLATEALRAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLFPGEPDVTGDQLSEYVREQLQ 340 (518)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeecCCCCCCCHHHHHHHHHHHHH
Confidence 333444433333333 3466666641 1 13567777776655 8
Q ss_pred cCC--CceeecCCC--ChHHHHHHHhhc--CCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHH
Q 041113 726 DCD--LQYIEEPVQ--NEEDIIKYCEES--GLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIA 798 (983)
Q Consensus 726 ~~~--i~~iEeP~~--~~~~~~~l~~~~--~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~ 798 (983)
+|. |.+||+|+. |+++|++|.+++ .+.|.+|.-..+.. ...++.-++.+ ++.+.+|++.+|.++++++.+
T Consensus 341 kYP~iIvsIEDp~~E~D~~gw~~lt~~lG~~iqivGDDL~vT~n---~~ri~~gi~~~~~NaiLIK~NQIGTlSEtieav 417 (518)
T PTZ00378 341 AVPDIVVYVEDTHCDEDTFGLQRLQAALGDSIVLSGVDVYARSE---YKKVESGLRGLWTSNIVLNPCAIGTLSDVVEIV 417 (518)
T ss_pred HCCCceEEEecCCCchHHHHHHHHHHHhCCeEEEECCCcCcCCC---HHHHHHHHhcCCCceEEEccccceeHHHHHHHH
Confidence 898 999999999 899999999887 47888888776621 12455555544 688999999999999999999
Q ss_pred HHHHHcCCcEE---eCCCCchHHHHHHHHHHHhhch
Q 041113 799 RWAQRHGKMAV---VSAAFESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 799 ~~A~~~gi~~~---~~~~~es~ig~~a~~~laa~~~ 831 (983)
.+|+++|..++ ++|-.+ -=...+|||-++.
T Consensus 418 ~lA~~~g~~~v~v~vShRSG---eD~~IAdLAVa~g 450 (518)
T PTZ00378 418 RAVGEDEGRAVTVLVQTLAG---NAATAAHLAVAMG 450 (518)
T ss_pred HHHHHcCCcEEccccCCCcC---CccHHHHHHHHcC
Confidence 99999999987 787543 3455666766554
|
|
| >cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-11 Score=123.70 Aligned_cols=111 Identities=20% Similarity=0.238 Sum_probs=90.5
Q ss_pred ecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
.+.|++|. ++|.|+|+++|. +++|+|++|||+|+ +...+|.++++ ++.|+++ |+|||+|++...
T Consensus 72 ~~~G~lG~--gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~--~~~~li~-vvdnN~~~~~~~---- 142 (195)
T cd02007 72 FGTGHSST--SISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGY--LKSNMIV-ILNDNEMSISPN---- 142 (195)
T ss_pred ECCCchhh--hHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHH--hCCCEEE-EEECCCcccCCC----
Confidence 45689999 999999999985 47999999999998 88899999998 7889866 666677765421
Q ss_pred CCCCccccccccccCCCCCHHHHHHHcCCceee-e--CCHHHHHHHHHhhhccCCCEEEEEEcCcc
Q 041113 391 DRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQ-V--KTKVELEEALSMSQHLGTDRVIEVESCID 453 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~-v--~~~~eL~~aL~~a~~~~~p~lIeV~~~~~ 453 (983)
.+ +...+++++|..... | .+.+++.++++++.+.++|++|++.|.+.
T Consensus 143 -------~~---------~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~~~~~P~~I~~~T~kg 192 (195)
T cd02007 143 -------VG---------TPGNLFEELGFRYIGPVDGHNIEALIKVLKEVKDLKGPVLLHVVTKKG 192 (195)
T ss_pred -------CC---------CHHHHHHhcCCCccceECCCCHHHHHHHHHHHHhCCCCEEEEEEEecc
Confidence 00 477888899987653 4 58999999999998888999999998753
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). |
| >PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-10 Score=122.17 Aligned_cols=177 Identities=14% Similarity=0.084 Sum_probs=124.8
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHh
Q 041113 255 SLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIG 334 (983)
Q Consensus 255 ~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiG 334 (983)
.+....+++.|.+.+.++.+++.+.|- ...+...+.. .| +.+...-+.||- +.+.|.|
T Consensus 23 GCg~~~~~~~l~~a~g~~~vi~~~iGC----~s~~~~~~p~---~~-------------~~~~~~~~~fg~--~~a~a~G 80 (299)
T PRK11865 23 GCGAAIAMRLALKALGKNTVIVVATGC----LEVITTPYPE---TA-------------WNVPWIHVAFEN--AAAVASG 80 (299)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEeCCCc----ccccCccCcC---Cc-------------cccccchhhhcc--hHHHHHH
Confidence 467788899999999888888888887 4444322110 01 111122256677 8888888
Q ss_pred hhhcc-----CceEEEEEccchhhh-ccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC-CCCC-ccccc----ccc
Q 041113 335 FAVGC-----NKHVLCVVGDISFLH-DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA-DRTE-PRILD----QYF 402 (983)
Q Consensus 335 aalA~-----~~~vv~i~GDGsf~~-~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~-~~~~-~~~~~----~~~ 402 (983)
.+.|. +.+||++.|||+|.. .++.|.-+++ .+.++++||+||..|++.-..+-. .... ..... ...
T Consensus 81 i~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~~a~~--r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~ 158 (299)
T PRK11865 81 IERAVKALGKKVNVVAIGGDGGTADIGFQSLSGAME--RGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTSPAGKYSR 158 (299)
T ss_pred HHHHHHHhcCCCeEEEEeCCchHhhccHHHHHHHHH--cCCCeEEEEECCccccCCCCCCCCCCCCCcccccCCCCcccC
Confidence 88873 458999999998854 6899999998 799999999999999987432110 0000 00000 001
Q ss_pred c-cCCCCCHHHHHHHcCCcee---eeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 403 Y-TTHNISIQNLCLAHGLNHV---QVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 403 ~-~~~~~df~~la~a~G~~~~---~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
+ ..+..|+..++.++|+.++ .+.++.++.++|++|.+.+||++|+|....-..
T Consensus 159 G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~~Gps~I~v~sPC~~~ 215 (299)
T PRK11865 159 GEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKEVEGPAYIQVLQPCPTG 215 (299)
T ss_pred CCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEECCCCCC
Confidence 1 1236899999999999876 456899999999999999999999999886553
|
|
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-10 Score=140.00 Aligned_cols=123 Identities=19% Similarity=0.240 Sum_probs=98.6
Q ss_pred eecCCCCCccchHHHHHhhhhcc------CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeCCCCccccCCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC------NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLP 388 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~------~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~ 388 (983)
..+.|.+|. |+|.|+|+++|. +++|+|++|||+++ |+.++|.|+++ ++.|+ ++|+|||+|++-...
T Consensus 113 ~~~~G~lG~--gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~--~~~nl-i~IvdnN~~~i~~~~- 186 (580)
T PRK05444 113 TFGAGHSST--SISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGD--LKSDL-IVILNDNEMSISPNV- 186 (580)
T ss_pred eECCChHHH--HHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHh--hCCCE-EEEEECCCCcCCCcc-
Confidence 356699999 999999999985 46899999999995 99999999998 89998 688999999753211
Q ss_pred CCCCCCccccccccccCCCCCHHHHHHHcCCceeee---CCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 389 IADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQV---KTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v---~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
...... ....+..+++++||+++..+ ++.+++.++|+++.+.++|++|++.|.+..-
T Consensus 187 -------~~~~~~---~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~~T~kg~G 246 (580)
T PRK05444 187 -------GALSNY---LARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAKDLKGPVLLHVVTKKGKG 246 (580)
T ss_pred -------hhhhhh---hccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCcC
Confidence 000000 11246778999999999864 6999999999999888899999999988654
|
|
| >PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=117.25 Aligned_cols=175 Identities=13% Similarity=0.047 Sum_probs=119.9
Q ss_pred CCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhh
Q 041113 256 LTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGF 335 (983)
Q Consensus 256 ~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGa 335 (983)
....-+++.+.+.+.++.+++.|.|- .......+ + ...+.+..--..+|- +.+.|.|+
T Consensus 24 CG~~~~~~~l~~~lg~~~v~~~~iGC----~~~~~g~~-p---------------~~~~~~~~i~~~~G~--~~~~A~G~ 81 (300)
T PRK11864 24 CGAPLGLRYLLKALGEKTVLVIPASC----STVIQGDT-P---------------KSPLTVPVLHTAFAA--TAAVASGI 81 (300)
T ss_pred CCCHHHHHHHHHHhCCCeEEEeCCCc----cceecCCC-C---------------cccccccceeehhhC--hHHHHHHH
Confidence 44556668888888888888888887 22221111 1 011112222356777 99999999
Q ss_pred hhcc------CceEEEEEccchhh-hccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC-CCC-ccccccccccCC
Q 041113 336 AVGC------NKHVLCVVGDISFL-HDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD-RTE-PRILDQYFYTTH 406 (983)
Q Consensus 336 alA~------~~~vv~i~GDGsf~-~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~-~~~-~~~~~~~~~~~~ 406 (983)
+.|. +..|+++.|||++. ..++.|.-++. .++|+++||+||..|++.-...... ... .......-....
T Consensus 82 a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l~~A~~--~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~ 159 (300)
T PRK11864 82 EEALKARGEKGVIVVGWAGDGGTADIGFQALSGAAE--RNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREH 159 (300)
T ss_pred HHHHHhhCCCCcEEEEEEccCccccccHHHHHHHHH--hCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCC
Confidence 9984 24577799999984 46788888888 7999999999999998874421110 000 000001111124
Q ss_pred CCCHHHHHHHcCCcee---eeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 407 NISIQNLCLAHGLNHV---QVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 407 ~~df~~la~a~G~~~~---~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
..|...++.++|+.++ .+.++.++.+++++|++.+||++|++....-.
T Consensus 160 kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~~~Gps~I~~~spC~~ 210 (300)
T PRK11864 160 KKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKEIRGFKFIHLLAPCPP 210 (300)
T ss_pred CCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCC
Confidence 6899999999999776 34478899999999999999999999987654
|
|
| >PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-10 Score=111.41 Aligned_cols=111 Identities=17% Similarity=0.135 Sum_probs=84.4
Q ss_pred HHHHHHHhcCCceEEEEccCCCh--hHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCcc
Q 041113 77 AEVLELVQGVNKGLLLVGAVHNE--DEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSES 154 (983)
Q Consensus 77 ~~~~~~L~~AkrPvIl~G~g~~~--~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~ 154 (983)
+.++++|++||||+|++|.+++. .+.+++.+|+|++++||++|++ +.+.--.||++|+ |. ++|.+|..+..++
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~-~~~~~~~kgv~~~--~~--~lg~lg~~~~~p~ 99 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGG-SYKGLIDKGVDAK--YI--NLHELTNYLKDPN 99 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccc-cccccccCCccCC--cc--cHHHHHhhccCch
Confidence 57788999999999999999864 3567999999999999999997 2222222789988 76 4789999999888
Q ss_pred cccc---CCCCEEEEeCCccccHH-HHHHHHhcCCceEEEEc
Q 041113 155 VKDW---IQFDVIIQIGSRITSKR-ISQMIEECFPCTYILVD 192 (983)
Q Consensus 155 ~~~~---~~aDlvl~iG~~~~~~~-~~~~~~~~~~~~~i~id 192 (983)
.+.+ .++|+||.+|+++.-.. ...-+.++.+.+.|-++
T Consensus 100 ~e~~~g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~~~~~~~~ 141 (171)
T PRK00945 100 WKGLDGNGNYDLVIFIGVTYYYASQGLSALKHFSPLKTITID 141 (171)
T ss_pred hhhhcCCCCcCEEEEecCCchhHHHHHHHHhhcCCceEEEec
Confidence 8888 79999999999974221 11223456565555444
|
|
| >KOG2670 consensus Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-09 Score=110.99 Aligned_cols=275 Identities=16% Similarity=0.179 Sum_probs=162.1
Q ss_pred eeEEEEEEEECCCCEEEEeecCcCcC------------------cccHHH-HHHHHHHHHhHhccCccc--c---ccccc
Q 041113 525 REGFILSLYLEDGSVGYGEVAPLEIH------------------KENLLD-AEEQLRFLLHFMTGAKIS--Y---FLPLL 580 (983)
Q Consensus 525 ~~~~lv~v~t~~G~~G~GE~~~~~~~------------------~~~~~~-~~~~l~~~~~~l~g~~~~--~---~~~~~ 580 (983)
.++|-|.++|+.|+. .. +.|.+.+ +..+.. +...-+.+.|.+++...+ + +..++
T Consensus 17 nPTVEVdL~T~~G~f-Ra-avPSGAStGi~EAlELrDgdK~~y~GkgV~kaV~niN~~i~pali~~~~dv~~Q~~iD~~m 94 (433)
T KOG2670|consen 17 NPTVEVDLTTEKGVF-RA-AVPSGASTGIYEALELRDGDKSKYMGKGVLKAVGNINNTIAPALIKKNLDVTDQKAIDNFM 94 (433)
T ss_pred CCceeEEEEecCcce-Ee-ecCCCCccchhhhhheecCCcceecchhHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHH
Confidence 678899999998842 22 2232211 222221 222224578888887433 2 22233
Q ss_pred ccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCC------
Q 041113 581 KGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNK------ 654 (983)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~------ 654 (983)
..++.+...+. ....|+-||.+|+--+-|-..|+|||+.+..-..-.. ...-+||.+..++++.
T Consensus 95 i~LDGTeNKsk-------lGaNaIlgvSlavckagAa~k~vplykhia~lag~~~---~~vlPVPaFNVlNGGsHAGn~l 164 (433)
T KOG2670|consen 95 IELDGTENKSK-------LGANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQ---PYVLPVPAFNVLNGGSHAGNKL 164 (433)
T ss_pred HhccCCccccc-------ccchhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCC---ceEecccceeeecCCccccchh
Confidence 32222222222 2357889999999999999999999998853220000 0123455554442211
Q ss_pred -------------CHHH-------HHHHHHHhhhcCCCEEEEeccCC----CC---hHHHHHHHHHHHHHcC--CCcEEE
Q 041113 655 -------------SPVE-------VASIATTLVEEGFTAIKLKVARR----AD---PIKDAEVIQEVRKKVG--HRIELR 705 (983)
Q Consensus 655 -------------~~~~-------~~~~~~~~~~~G~~~~KiKig~~----~~---~~~d~~~v~~vr~~~g--~~~~l~ 705 (983)
+-++ +-..++..+..-|-.----||.. ++ .++-++.|...-+..| .++.|-
T Consensus 165 AmQEfMIlP~ga~sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E~L~Li~~Ai~kagyt~kikIg 244 (433)
T KOG2670|consen 165 AMQEFMILPVGADSFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEALDLIKEAINKAGYTGKVKIG 244 (433)
T ss_pred hhhhheecccCchhHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHHHHHHHHHHHHhcCCCCceEEE
Confidence 0011 11111112221222111223321 12 2344444433323334 357777
Q ss_pred EEcCC---------------------C-CCHHHHHHH-HhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCcc
Q 041113 706 VDANR---------------------N-WTYQEALEF-GFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETID 760 (983)
Q Consensus 706 vDaN~---------------------~-~~~~~a~~~-~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~ 760 (983)
+|.-. . ++.++..++ -+.+.+|.+.-||+|+. ||+.|..+....++.|.+|.-..
T Consensus 245 mDvAaseF~~dgkYDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPivSiEDPFdqdDw~~w~~~~~~~~iqiVgDDLtv 324 (433)
T KOG2670|consen 245 MDVAASEFYKDGKYDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPIVSIEDPFDQDDWEAWSKFFKEVGIQIVGDDLTV 324 (433)
T ss_pred EeechhhhhcCCcccccCcCCCCCcccccCHHHHHHHHHHHHhcCCeeeecCCcchhhHHHHHHHhhccceEEecCcccc
Confidence 77521 2 356665444 44568999999999998 78888888888999999999877
Q ss_pred CcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC
Q 041113 761 KFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF 814 (983)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~ 814 (983)
+- +.+....+.+..|+.+-+|+..+|.+|++++.+.+|++.|..+|++|-.
T Consensus 325 Tn---pkri~~Ai~~k~cN~LLlKvNQIGtvtEsiea~~~a~~~gwgvmvSHRS 375 (433)
T KOG2670|consen 325 TN---PKRIATAIEEKACNALLLKVNQIGTVTESIEAAKLARSAGWGVMVSHRS 375 (433)
T ss_pred cC---HHHHHHHHHHhhccceEeeccccccHHHHHHHHHHHHhcCceEEEeccC
Confidence 63 3333344445568889999999999999999999999999999999974
|
|
| >TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit | Back alignment and domain information |
|---|
Probab=99.08 E-value=5e-10 Score=108.74 Aligned_cols=90 Identities=19% Similarity=0.238 Sum_probs=75.1
Q ss_pred HHHHHHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccc
Q 041113 77 AEVLELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESV 155 (983)
Q Consensus 77 ~~~~~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~ 155 (983)
++++++|++||||+|++|+++. ..+.+++++|+|++|+||++|++ +.+.-.-||++ +||. .+|.++..+..++.
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~-~~~~~~~kgv~--~~~~--~lg~~g~~~~~p~~ 92 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATAD-TYRALIEAGIE--SEEM--NLHEITQFLADPSW 92 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCc-cccccccCCee--cCCC--CHHHHHHhccCchh
Confidence 5788899999999999999986 45678999999999999999997 42111126888 6776 37889999988888
Q ss_pred ccc---CCCCEEEEeCCcc
Q 041113 156 KDW---IQFDVIIQIGSRI 171 (983)
Q Consensus 156 ~~~---~~aDlvl~iG~~~ 171 (983)
+.+ .++|+||.+|+++
T Consensus 93 e~~~g~g~~DlvlfvG~~~ 111 (162)
T TIGR00315 93 EGFDGEGNYDLVLFLGIIY 111 (162)
T ss_pred hhccCCCCcCEEEEeCCcc
Confidence 888 8999999999998
|
Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis. |
| >COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.6e-08 Score=100.31 Aligned_cols=289 Identities=16% Similarity=0.216 Sum_probs=178.1
Q ss_pred eeEEEEEEEECCCCEEEEeecCcCcCcc----cHHH---HHHHH-HHHHhHhccCcccccccccccCchhhhhhhcCCCC
Q 041113 525 REGFILSLYLEDGSVGYGEVAPLEIHKE----NLLD---AEEQL-RFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPA 596 (983)
Q Consensus 525 ~~~~lv~v~t~~G~~G~GE~~~~~~~~~----~~~~---~~~~l-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (983)
-+.+.|.+..++|.+-||.|....|++. .+.. ....+ ..+.|.|+|++...+.+.- ..+..+ +..
T Consensus 50 ge~lsv~lvLsdg~vv~GdcaaVQYSGAGgRDpLF~a~~~~~~~~~~v~p~LvgrDv~~~ldnA------~vfe~l-~d~ 122 (410)
T COG3799 50 GECLSVQLVLSDGAVVVGDCAAVQYSGAGGRDPLFLAEHFIPFLNDHVKPLLVGRDVDAFLDNA------RVFEKL-IDG 122 (410)
T ss_pred cceeeEEEEEecCceeeccceeeEecCCCCCCchhhhhhhHHHHhhhhhhhhhCccHHhhcchh------HHhHhh-ccC
Confidence 5678888889999999999976544321 1111 11122 3477888998876543321 112222 123
Q ss_pred CcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCC--CCHHHHHHHHHHhhhcC-CCE
Q 041113 597 CEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSN--KSPVEVASIATTLVEEG-FTA 673 (983)
Q Consensus 597 ~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~G-~~~ 673 (983)
..++.+.+.++..||.|+.+.+.+.--.+.+-.... ++....+||+|+..+.. ...++|+-.....+.+| |..
T Consensus 123 ~~LhtAvrYGvSQALl~Aaa~a~~tt~tevvcde~~----lp~~te~vP~fgQSGd~R~~~vdkMiLK~vdVLPHgLiNs 198 (410)
T COG3799 123 NLLHTAVRYGVSQALLDAAALATGTTKTEVVCDEWQ----LPRVTESVPLFGQSGDDRYIAVDKMILKGVDVLPHGLINS 198 (410)
T ss_pred CcchHHHHhhHHHHHHHHHHHhhccchheeehhhhC----CCCccccccccccCcchhhhhHHHHHHhhcCccchhhhhh
Confidence 456778899999999999998888664444432210 01124678998765211 11222222111111122 111
Q ss_pred EEEeccCC-----CChHHHHHHHHHHHHHcCCCcEEEEEcCCC------CCHHHHHHHHhhcccC--C-CceeecCCC--
Q 041113 674 IKLKVARR-----ADPIKDAEVIQEVRKKVGHRIELRVDANRN------WTYQEALEFGFLIKDC--D-LQYIEEPVQ-- 737 (983)
Q Consensus 674 ~KiKig~~-----~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~------~~~~~a~~~~~~l~~~--~-i~~iEeP~~-- 737 (983)
+ -|+|.. +-++|=.+|+..++. -|..-.|-+|..+. +++.....+...|++. + ..+||-|+.
T Consensus 199 v-e~~G~dG~~l~Eyv~Wls~R~~~~g~-~gYhP~lH~DVYG~iGe~fg~dp~r~a~yi~~l~~~a~~~pL~IEgP~DaG 276 (410)
T COG3799 199 V-EELGFDGEKLREYVRWLSDRILSKGT-SGYHPTLHIDVYGTIGEIFGMDPLRCAQYIASLEKEAQGLPLYIEGPVDAG 276 (410)
T ss_pred H-HHhCCchHHHHHHHHHHHHHHHhcCC-CCCCccEEEeehhhhHHHhCCCHHHHHHHHHHHHhhCCCCceeeeccccCC
Confidence 1 123320 011222233333221 24566788998874 5665555666666542 1 469999997
Q ss_pred ----ChHHHHHHHh-----hcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCc
Q 041113 738 ----NEEDIIKYCE-----ESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKM 807 (983)
Q Consensus 738 ----~~~~~~~l~~-----~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~ 807 (983)
.++.|+++++ -+++.|..||.|.+..| ...+.+.+ ++.+|+|..-+|||.+..+.+.+|+.+.+.
T Consensus 277 s~~aQI~~~a~i~~~L~~~Gs~v~IVaDEwCnt~~D-----i~~F~dA~a~h~VQiKTPDvGsi~~~~rAvlyC~~~~~~ 351 (410)
T COG3799 277 SKPAQIRLLAAITKELTRLGSGVKIVADEWCNTYQD-----IVDFTDAAACHMVQIKTPDVGSIHNIVRAVLYCNSHSME 351 (410)
T ss_pred CCHHHHHHHHHHHHHHhhcCCcceEeehhhcccHHH-----HHHHHhhccccEEEecCCCcchHHHHHHHHhhhccCccc
Confidence 3455555543 36799999999999865 33444443 688999999999999999999999999999
Q ss_pred EEeCCCC-chHHHHHHHHHHHhhch
Q 041113 808 AVVSAAF-ESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 808 ~~~~~~~-es~ig~~a~~~laa~~~ 831 (983)
.++++.. |+.++...++|++-+..
T Consensus 352 AYvGGtCnETdvSAr~cvHValAt~ 376 (410)
T COG3799 352 AYVGGTCNETDVSARTCVHVALATR 376 (410)
T ss_pred eeecccccccchhhhhhhhhhhhhc
Confidence 8887766 89999999999997754
|
|
| >KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-08 Score=108.33 Aligned_cols=69 Identities=25% Similarity=0.295 Sum_probs=56.5
Q ss_pred ceeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCCCCCC
Q 041113 908 QVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSKMQNH 983 (983)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~~~~ 983 (983)
.+..+.+++++ +.+ ++...|.+. +|.|+|+|||+.++.+|+.++..|+.. |||+|+|+||||.|+.|.+
T Consensus 21 ~~~hk~~~~~g--I~~--h~~e~g~~~---gP~illlHGfPe~wyswr~q~~~la~~~~rviA~DlrGyG~Sd~P~~ 90 (322)
T KOG4178|consen 21 AISHKFVTYKG--IRL--HYVEGGPGD---GPIVLLLHGFPESWYSWRHQIPGLASRGYRVIAPDLRGYGFSDAPPH 90 (322)
T ss_pred hcceeeEEEcc--EEE--EEEeecCCC---CCEEEEEccCCccchhhhhhhhhhhhcceEEEecCCCCCCCCCCCCC
Confidence 35666666655 333 445556554 899999999999999999999999988 9999999999999999864
|
|
| >COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.2e-08 Score=106.03 Aligned_cols=150 Identities=20% Similarity=0.211 Sum_probs=100.0
Q ss_pred ecCCCCCccchHHHHHhhhhcc---C---ceEEEEEccchhhh-ccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC---N---KHVLCVVGDISFLH-DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~---~---~~vv~i~GDGsf~~-~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
+..|..|- .+|-|.|+++|. + +-++|++|||+.-- ++.|-.+.+- -+++|+ |++++||+|+|- .+..
T Consensus 133 ~~~~iVg~--Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~-v~klPv-vf~ieNN~yAiS--vp~~ 206 (358)
T COG1071 133 GGSGIVGT--QIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAA-VWKLPV-VFVIENNQYAIS--VPRS 206 (358)
T ss_pred CCCceecc--cccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHH-HhcCCE-EEEEecCCceee--cchh
Confidence 34455555 999999999996 2 26889999999632 1222222222 279998 556667778875 1110
Q ss_pred CCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHH----HHHHHhhhccCCCEEEEEEcCc------------
Q 041113 391 DRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVEL----EEALSMSQHLGTDRVIEVESCI------------ 452 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL----~~aL~~a~~~~~p~lIeV~~~~------------ 452 (983)
. +.....+..=|.+||+.+++|+ ++..+ ++|.+++.+.+||+|||+.+.+
T Consensus 207 -------~-----q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~ 274 (358)
T COG1071 207 -------R-----QTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSK 274 (358)
T ss_pred -------h-----cccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccc
Confidence 0 0112346668899999999998 44444 4455555667899999999987
Q ss_pred ---------------------------ccchHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 453 ---------------------------DANATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 453 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
--+...+.++.+++.+.+.+|+.+++.++.|+.
T Consensus 275 YRskeE~~~~~~~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ea~e~a~~~p~P~~ 334 (358)
T COG1071 275 YRSKEEVEEWKKRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVDEAVEFAEASPYPDV 334 (358)
T ss_pred cCCHHHHHHHhccChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCh
Confidence 012334456677788888888888998887765
|
|
| >PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.9e-08 Score=107.58 Aligned_cols=151 Identities=18% Similarity=0.192 Sum_probs=98.0
Q ss_pred eecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhh-ccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLH-DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~-~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
.+..+.+|- .+|.+.|.++|. +.-++|++|||+..- .+.|-..++. .+++||++||-|| +|++--.
T Consensus 97 ~~~~~~vg~--~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~-~~~lPvifvveNN-~~aist~---- 168 (300)
T PF00676_consen 97 LGASSPVGA--QVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAA-LWKLPVIFVVENN-QYAISTP---- 168 (300)
T ss_dssp EEEESSTTT--HHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHH-HTTTSEEEEEEEE-SEETTEE----
T ss_pred eeccccccc--cCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHh-hccCCeEEEEecC-CcccccC----
Confidence 455577777 889999999985 467889999999542 2333333333 2899996655555 5666421
Q ss_pred CCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhh----ccCCCEEEEEEcCc------cc----
Q 041113 391 DRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQ----HLGTDRVIEVESCI------DA---- 454 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~----~~~~p~lIeV~~~~------~~---- 454 (983)
... .....++...|++||+++++|+ ++.++-++.++|+ +.+||+|||+.+.+ .+
T Consensus 169 ------~~~----~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~ 238 (300)
T PF00676_consen 169 ------TEE----QTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTF 238 (300)
T ss_dssp ------HHH----HCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGG
T ss_pred ------ccc----cccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCccc
Confidence 010 1134568889999999999998 5666666655554 45899999999965 00
Q ss_pred ------------------------------chHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 455 ------------------------------NATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 455 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
+...+.++.+++.+.+..|+..+.+++.|++
T Consensus 239 yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~ 299 (300)
T PF00676_consen 239 YRSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVEFAEASPEPDP 299 (300)
T ss_dssp TSHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHSHBC-G
T ss_pred cCCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 1233445556667777888888888777765
|
Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A .... |
| >PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4 | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.5e-08 Score=96.72 Aligned_cols=181 Identities=14% Similarity=0.200 Sum_probs=101.5
Q ss_pred ceeEEEEeecCCC--CHHHHHHHHHHhhhcC-CCEEEEeccCCCChHHHHHHHHHHHH----Hc--CCCcEEEEEcCCC-
Q 041113 642 TSIKICALIDSNK--SPVEVASIATTLVEEG-FTAIKLKVARRADPIKDAEVIQEVRK----KV--GHRIELRVDANRN- 711 (983)
Q Consensus 642 ~~i~~~~~~~~~~--~~~~~~~~~~~~~~~G-~~~~KiKig~~~~~~~d~~~v~~vr~----~~--g~~~~l~vDaN~~- 711 (983)
.+||+++..+... ..+++.-.-....-+| |..+. |+|. +-+.=.+.++-+++ .- +..-.|-+|..+.
T Consensus 4 ~pvpif~QsGddry~n~DKmIlK~~dvlPH~linnve-klG~--~Ge~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVYGti 80 (248)
T PF07476_consen 4 EPVPIFAQSGDDRYTNVDKMILKGVDVLPHALINNVE-KLGP--DGEKLLEYVKWLKDRIRELGDEDYRPVLHIDVYGTI 80 (248)
T ss_dssp ----EE---TT-TTHHHHHHHHTT-SEEEETT---CC-CC-T--TSHHHHHHHHHHHHHHHHHSSTT---EEEEE-TTHH
T ss_pred CCCcccccCCchhhhhHHHHHHhCCCcCchHhhhCHH-HhCc--chHHHHHHHHHHHHHHHHhcCCCCCccEEEEccchH
Confidence 4578887753211 2333332222223355 77888 9987 33333444433333 22 2345788999875
Q ss_pred ---C--CHHHHHHHHhhccc----CCCceeecCCC------ChHHHHHHHh-----hcCCcEEeCCCccCcCCChHHHHH
Q 041113 712 ---W--TYQEALEFGFLIKD----CDLQYIEEPVQ------NEEDIIKYCE-----ESGLPVALDETIDKFQKDPLNMLE 771 (983)
Q Consensus 712 ---~--~~~~a~~~~~~l~~----~~i~~iEeP~~------~~~~~~~l~~-----~~~ipIa~dEs~~~~~~~~~~~~~ 771 (983)
| +++....++..|++ |. ..||.|+. +.+.+++|++ .+++.|.+||-|.++.| .+
T Consensus 81 G~~f~~d~~~~adYl~~l~~aA~P~~-L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eD-----I~ 154 (248)
T PF07476_consen 81 GLAFDNDPDRMADYLAELEEAAAPFK-LRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLED-----IR 154 (248)
T ss_dssp HHHTTT-HHHHHHHHHHHHHHHTTS--EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHH-----HH
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCCe-eeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHH-----HH
Confidence 2 56666666666644 54 48999997 3555666654 35689999999999875 44
Q ss_pred hhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhch
Q 041113 772 KYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 772 ~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~ 831 (983)
.+.+. .+|.+|||..-+||+.++.+.+-+|+++|+..+.+++. ||.++...++|+|-+..
T Consensus 155 ~F~da~A~dmVQIKtPDLGgi~ntieAvlyCk~~gvgaY~GGtCNETd~SArv~~hvalAt~ 216 (248)
T PF07476_consen 155 EFADAKAADMVQIKTPDLGGINNTIEAVLYCKEHGVGAYLGGTCNETDRSARVCVHVALATR 216 (248)
T ss_dssp HHHHTT-SSEEEE-GGGGSSTHHHHHHHHHHHHTT-EEEE---TTS-HHHHHHHHHHHHHCT
T ss_pred HHHhcCCcCEEEecCCCccchhhHHHHHHHHHhcCCceeecccccccchhHHHHHHHHHhcC
Confidence 44444 46999999999999999999999999999999988777 89999999999998754
|
3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A. |
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.7e-08 Score=119.90 Aligned_cols=131 Identities=15% Similarity=0.093 Sum_probs=91.8
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchh--hhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC-----
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISF--LHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA----- 390 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf--~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~----- 390 (983)
+.|+||+ ++++|+|++++. +++|+|++|||+| .|...++.++.+ +++|+ ++|+|||+|.+-.....-
T Consensus 121 ~~gslg~--a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal~~a~~--~~~~l-i~I~dnN~~~i~~~~~~~~~~l~ 195 (641)
T PRK12571 121 SSTSISA--ALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEALNNAGA--ADRRL-IVILNDNEMSIAPPVGALAAYLS 195 (641)
T ss_pred CcChHHH--HHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHHHHHHH--hCCCE-EEEEECCCeeecCCccHHHHHHH
Confidence 4577888 899999999888 8999999999999 678899999998 89988 558888888764321000
Q ss_pred CCCCccccc-------cccc-cCCC---------------CCHHHHHHHcCCcee-eeC--CHHHHHHHHHhhhc-cCCC
Q 041113 391 DRTEPRILD-------QYFY-TTHN---------------ISIQNLCLAHGLNHV-QVK--TKVELEEALSMSQH-LGTD 443 (983)
Q Consensus 391 ~~~~~~~~~-------~~~~-~~~~---------------~df~~la~a~G~~~~-~v~--~~~eL~~aL~~a~~-~~~p 443 (983)
+......+. +... .+.. .-....=++||+++. .|+ +.++|.++|+++.+ .++|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~~~~P 275 (641)
T PRK12571 196 TLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARARADGP 275 (641)
T ss_pred HHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhCCCCC
Confidence 000000000 0000 0000 001356689999999 677 89999999998876 5899
Q ss_pred EEEEEEcCccc
Q 041113 444 RVIEVESCIDA 454 (983)
Q Consensus 444 ~lIeV~~~~~~ 454 (983)
.+|.+.|-+..
T Consensus 276 ~~I~~~T~kGk 286 (641)
T PRK12571 276 VLVHVVTEKGR 286 (641)
T ss_pred EEEEEEecCcc
Confidence 99999998754
|
|
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.3e-08 Score=108.11 Aligned_cols=70 Identities=19% Similarity=0.166 Sum_probs=56.9
Q ss_pred eeEEEEEEcc-cCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 909 VLRYQLNVNS-KDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 909 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
...+.+++.. ++..++++|...|.+. +|+|||+||+++++..|..+++.|++ +|+|+++|+||||.|+++
T Consensus 19 ~~~~~~~~~~~~~~~~~i~y~~~G~~~---~~~lvliHG~~~~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~ 90 (302)
T PRK00870 19 FAPHYVDVDDGDGGPLRMHYVDEGPAD---GPPVLLLHGEPSWSYLYRKMIPILAAAGHRVIAPDLIGFGRSDKP 90 (302)
T ss_pred CCceeEeecCCCCceEEEEEEecCCCC---CCEEEEECCCCCchhhHHHHHHHHHhCCCEEEEECCCCCCCCCCC
Confidence 3455566665 4455677777777644 78999999999999999999999985 599999999999999864
|
|
| >COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.3e-07 Score=98.87 Aligned_cols=129 Identities=17% Similarity=0.114 Sum_probs=97.4
Q ss_pred CCCccchHHHHHhhhhcc-CceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC-CCCc-cc
Q 041113 322 ASGIDGLLSTAIGFAVGC-NKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD-RTEP-RI 397 (983)
Q Consensus 322 ~mG~~g~lpaaiGaalA~-~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~-~~~~-~~ 397 (983)
.-|- +.+.|.|.++|+ +..||++.||| ++-...+.|.-+.+ .|.+|++||+||..|+.-.-..-.. .... ..
T Consensus 71 ~~gr--a~a~atGik~A~~~l~Viv~gGDG~~~dIG~~~l~h~~~--Rn~dit~iv~DNevYgnTggQ~S~tTp~G~~t~ 146 (294)
T COG1013 71 LHGR--AAAVATGIKLANPALSVIVIGGDGDAYDIGGNHLIHALR--RNHDITYIVVDNEVYGNTGGQASPTTPKGAKTK 146 (294)
T ss_pred ccCc--chhhHHHHHHhccCCeEEEEecchhHhhhhhHHHHHHHH--cCCCeEEEEECCeecccCCCccCCCCCCCceee
Confidence 3445 899999999999 89999999999 77788999999998 7999999999999999864311000 0000 00
Q ss_pred cccccccC-CCCCHHHHHHHcCCcee---eeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 398 LDQYFYTT-HNISIQNLCLAHGLNHV---QVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 398 ~~~~~~~~-~~~df~~la~a~G~~~~---~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
....-... ...|...+|-++|+.++ .+..+.++.+.+++|.+..||++|+|..+.-.
T Consensus 147 t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~~Gps~I~v~sPC~t 207 (294)
T COG1013 147 TTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEHKGPSFIDVLSPCPT 207 (294)
T ss_pred ecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhccCCeEEEEecCCCC
Confidence 00000011 34599999999998765 46689999999999999999999999987643
|
|
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.7e-08 Score=108.90 Aligned_cols=64 Identities=25% Similarity=0.380 Sum_probs=51.1
Q ss_pred eEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 910 LRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+.+++++.+..+ +|...|+. +|+|||+|||++++.+|+.+++.|+++|+||++|+||||.|+.+
T Consensus 9 ~~~~~~~~~~~i----~y~~~G~~----~~~vlllHG~~~~~~~w~~~~~~L~~~~~vi~~DlpG~G~S~~~ 72 (294)
T PLN02824 9 ETRTWRWKGYNI----RYQRAGTS----GPALVLVHGFGGNADHWRKNTPVLAKSHRVYAIDLLGYGYSDKP 72 (294)
T ss_pred CCceEEEcCeEE----EEEEcCCC----CCeEEEECCCCCChhHHHHHHHHHHhCCeEEEEcCCCCCCCCCC
Confidence 344555544333 34555632 68999999999999999999999999999999999999999865
|
|
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.2e-07 Score=107.20 Aligned_cols=127 Identities=20% Similarity=0.228 Sum_probs=89.8
Q ss_pred cCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD 391 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~ 391 (983)
..|..|- ++|.|+|+++|. ++.|+|++|||+++- ....|..|.. ++.|+ |+|+|||+|++-.......
T Consensus 111 ~~g~~~~--~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~--~k~~l-i~Ii~dN~~si~~~~~~~~ 185 (581)
T PRK12315 111 TVGHTST--SIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAE--LKSNL-IIIVNDNQMSIAENHGGLY 185 (581)
T ss_pred CCCcHHH--HHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHh--hCCCE-EEEEECCCCcCCCCCchhh
Confidence 3455555 999999999985 468999999999975 4555666666 78887 5555666676653211000
Q ss_pred CCCccccccccccCCCCCHHHHHHHcCCceeee-C--CHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 392 RTEPRILDQYFYTTHNISIQNLCLAHGLNHVQV-K--TKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 392 ~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v-~--~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
..... .......+...++++||+++..| + +.+++.++++++.+.++|+||++.|.+..-
T Consensus 186 ----~~l~~-~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~~~gP~~i~~~T~kG~G 247 (581)
T PRK12315 186 ----KNLKE-LRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKDIDHPIVLHIHTLKGKG 247 (581)
T ss_pred ----hhhhh-hhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHhCCCCEEEEEEeecCCC
Confidence 00000 01112356778999999999998 5 899999999998877899999999997643
|
|
| >PLN02269 Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.8e-07 Score=104.19 Aligned_cols=148 Identities=14% Similarity=0.145 Sum_probs=96.7
Q ss_pred eecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhhc-cchHH-HHHhhccCCCEEEEEEeCCCCccccCCCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLHD-TNGLA-ILKQRMKRKPILMLVINNHGGAIFSLLPI 389 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~~-~~eL~-Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~ 389 (983)
.+..+.+|. ++|.|+|+++|. +..++|++|||+..-. +.|-. .+.. +++|+++||-||+ |++-...
T Consensus 134 ~~~~~~vG~--~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~--~~lPvvfvveNN~-~aist~~-- 206 (362)
T PLN02269 134 YGGHGIVGA--QVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAAL--WDLPVIFVCENNH-YGMGTAE-- 206 (362)
T ss_pred cccCchhhc--cccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhc--cCcCEEEEEeCCC-EeccCch--
Confidence 355577777 999999999985 4679999999996532 22222 2333 7999766666655 8764211
Q ss_pred CCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhhc---cCCCEEEEEEcCcc------c----
Q 041113 390 ADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQH---LGTDRVIEVESCID------A---- 454 (983)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~~---~~~p~lIeV~~~~~------~---- 454 (983)
.. .....+|. .+++++++++|+ ++.++.++++.+.+ .++|+|||+.+.+. +
T Consensus 207 ---------~~---~~~~~~~~--~~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~~gP~lIe~~tyR~~gHs~~D~~~~ 272 (362)
T PLN02269 207 ---------WR---AAKSPAYY--KRGDYVPGLKVDGMDVLAVKQACKFAKEHALSNGPIVLEMDTYRYHGHSMSDPGST 272 (362)
T ss_pred ---------hh---hccchHHH--HhhcCCCeEEECCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCcCCCcCCCCCCcc
Confidence 00 01223444 356788888887 67777776666542 28999999987651 0
Q ss_pred ------------------------------chHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 455 ------------------------------NATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 455 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
+...+.++.+++.+.+..|+.++.+++.|+.
T Consensus 273 YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~A~~~p~P~~ 333 (362)
T PLN02269 273 YRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAKAKESPMPDP 333 (362)
T ss_pred cCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 1222334556677778888899888888764
|
|
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-07 Score=106.20 Aligned_cols=122 Identities=21% Similarity=0.285 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhhhcCCCEEEEeccCC----------CChHH-------------HHHHHHHHHHHcCCCcEEEEEcC---
Q 041113 656 PVEVASIATTLVEEGFTAIKLKVARR----------ADPIK-------------DAEVIQEVRKKVGHRIELRVDAN--- 709 (983)
Q Consensus 656 ~~~~~~~~~~~~~~G~~~~KiKig~~----------~~~~~-------------d~~~v~~vr~~~g~~~~l~vDaN--- 709 (983)
.+++++.++.+++.||..|+|+.+.. .+... .++.+++||+++|+++.|.+|.|
T Consensus 153 i~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~ 232 (336)
T cd02932 153 VDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATD 232 (336)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccc
Confidence 34567777788889999999998641 11222 37999999999999999999955
Q ss_pred ---CCCCHHHHHHHHhhcccCCCceee-----------cCCC---ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHh
Q 041113 710 ---RNWTYQEALEFGFLIKDCDLQYIE-----------EPVQ---NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEK 772 (983)
Q Consensus 710 ---~~~~~~~a~~~~~~l~~~~i~~iE-----------eP~~---~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~ 772 (983)
++|+.++++++++.|+++++.||| .|+. +.+..+++++.+++||++++.+.+..+ +..
T Consensus 233 ~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~-----a~~ 307 (336)
T cd02932 233 WVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQ-----AEA 307 (336)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHH-----HHH
Confidence 889999999999999999999999 4663 346678899999999999999998753 556
Q ss_pred hcCCC-ceEEE
Q 041113 773 YAHPG-IVAIV 782 (983)
Q Consensus 773 ~~~~~-~~~i~ 782 (983)
+++.+ +|.|.
T Consensus 308 ~l~~g~aD~V~ 318 (336)
T cd02932 308 ILESGRADLVA 318 (336)
T ss_pred HHHcCCCCeeh
Confidence 66555 67764
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=9e-08 Score=105.83 Aligned_cols=53 Identities=30% Similarity=0.575 Sum_probs=47.0
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
++|...|+ +++|||+||++++...|+.+++.|+++|+||++|+||||.|+++.
T Consensus 19 i~y~~~G~-----g~~vvllHG~~~~~~~w~~~~~~L~~~~~via~D~~G~G~S~~~~ 71 (295)
T PRK03592 19 MAYIETGE-----GDPIVFLHGNPTSSYLWRNIIPHLAGLGRCLAPDLIGMGASDKPD 71 (295)
T ss_pred EEEEEeCC-----CCEEEEECCCCCCHHHHHHHHHHHhhCCEEEEEcCCCCCCCCCCC
Confidence 33456665 789999999999999999999999999999999999999998764
|
|
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-07 Score=107.75 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=42.1
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||||||++++..|.++++.|+++|+||++|+||||.|+++
T Consensus 88 gp~lvllHG~~~~~~~w~~~~~~L~~~~~via~Dl~G~G~S~~~ 131 (360)
T PLN02679 88 GPPVLLVHGFGASIPHWRRNIGVLAKNYTVYAIDLLGFGASDKP 131 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCCCCCCCC
Confidence 58999999999999999999999999999999999999999875
|
|
| >PLN02790 transketolase | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.5e-07 Score=112.01 Aligned_cols=117 Identities=15% Similarity=0.204 Sum_probs=93.2
Q ss_pred eecCCCCCccchHHHHHhhhhccC---------------ceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGCN---------------KHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNH 379 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~~---------------~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~ 379 (983)
....|.+|. |+|.|+|.|+|.. ..|+|++|||+++= ..-.+..|.. +++|-+|+|+|||
T Consensus 101 ~~~tG~lG~--gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~--~~L~nli~i~d~N 176 (654)
T PLN02790 101 EVTTGPLGQ--GIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGH--WGLGKLIVLYDDN 176 (654)
T ss_pred cccCCchhc--hHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHH--hCCCCEEEEEecC
Confidence 355688999 9999999999852 46999999999864 4556666776 8999889999999
Q ss_pred CCccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeee----CCHHHHHHHHHhhhc-cCCCEEEEEEcCc
Q 041113 380 GGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQV----KTKVELEEALSMSQH-LGTDRVIEVESCI 452 (983)
Q Consensus 380 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v----~~~~eL~~aL~~a~~-~~~p~lIeV~~~~ 452 (983)
+|.+-.... . ...-+..+..++||+++..| ++.++|.++++++.+ .++|++|++.|.+
T Consensus 177 ~~~i~~~~~-----------~----~~~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~~~~P~lI~~~T~k 239 (654)
T PLN02790 177 HISIDGDTE-----------I----AFTEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAVTDKPTLIKVTTTI 239 (654)
T ss_pred CccccCCcc-----------c----ccchhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeEEEEEEEee
Confidence 997753210 0 01246788999999999999 578899999999886 6899999999975
|
|
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-07 Score=103.37 Aligned_cols=64 Identities=20% Similarity=0.217 Sum_probs=52.1
Q ss_pred eeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 909 VLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
++++.+++.+.. ++|...|+ +|+||||||++.++..|+.+++.|.++|+||++|+||||.|+.+
T Consensus 14 ~~~~~~~~~~~~----i~y~~~G~-----~~~iv~lHG~~~~~~~~~~~~~~l~~~~~vi~~D~~G~G~S~~~ 77 (286)
T PRK03204 14 FESRWFDSSRGR----IHYIDEGT-----GPPILLCHGNPTWSFLYRDIIVALRDRFRCVAPDYLGFGLSERP 77 (286)
T ss_pred ccceEEEcCCcE----EEEEECCC-----CCEEEEECCCCccHHHHHHHHHHHhCCcEEEEECCCCCCCCCCC
Confidence 455566554433 33456665 68999999999999999999999999999999999999999865
|
|
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-07 Score=102.79 Aligned_cols=44 Identities=30% Similarity=0.453 Sum_probs=41.7
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
++||||+||+++++..|.++++.|+++|+||++|+||||+|+.+
T Consensus 25 ~~plvllHG~~~~~~~w~~~~~~L~~~~~vi~~Dl~G~G~S~~~ 68 (276)
T TIGR02240 25 LTPLLIFNGIGANLELVFPFIEALDPDLEVIAFDVPGVGGSSTP 68 (276)
T ss_pred CCcEEEEeCCCcchHHHHHHHHHhccCceEEEECCCCCCCCCCC
Confidence 47999999999999999999999999999999999999999865
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-07 Score=106.66 Aligned_cols=56 Identities=21% Similarity=0.266 Sum_probs=48.9
Q ss_pred eEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 923 SFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 923 ~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
++++|...|+.. +|+|||||||+.++..|+.+++.|+++|+||++|+||||.|+++
T Consensus 115 ~~~~y~~~G~~~---~~~ivllHG~~~~~~~w~~~~~~L~~~~~Via~DlpG~G~S~~p 170 (383)
T PLN03084 115 FRWFCVESGSNN---NPPVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSDKP 170 (383)
T ss_pred eEEEEEecCCCC---CCeEEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCCCCCCCC
Confidence 444556667543 78999999999999999999999999999999999999999876
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-06 Score=92.33 Aligned_cols=134 Identities=22% Similarity=0.314 Sum_probs=108.9
Q ss_pred ceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC--------------CChHHHHHHHHHHHHHcCCCcEEEEE
Q 041113 642 TSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR--------------ADPIKDAEVIQEVRKKVGHRIELRVD 707 (983)
Q Consensus 642 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~--------------~~~~~d~~~v~~vr~~~g~~~~l~vD 707 (983)
..+|+..++ .+.+++++.+.++.+.+.||..+++++|.+ .+++...+.++++|+.++ +.+.++
T Consensus 53 ~~~p~~~qi-~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~--~~v~vk 129 (231)
T cd02801 53 EERPLIVQL-GGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP--IPVTVK 129 (231)
T ss_pred cCCCEEEEE-cCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC--CCEEEE
Confidence 456777777 356799999999999889999999999863 145667889999999986 788999
Q ss_pred cCCCCCHH-HHHHHHhhcccCCCcee-------ec-CCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 708 ANRNWTYQ-EALEFGFLIKDCDLQYI-------EE-PVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 708 aN~~~~~~-~a~~~~~~l~~~~i~~i-------Ee-P~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
.|.+|+.+ ++.++++.+++.++.+| ++ +.. +++.++++++..++||.++..+.+..+ +..+++.
T Consensus 130 ~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d-----~~~~l~~ 204 (231)
T cd02801 130 IRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLED-----ALRCLEQ 204 (231)
T ss_pred EeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHH-----HHHHHHh
Confidence 99999776 89999999999999999 76 553 688888999999999999999998754 4445544
Q ss_pred -CceEEEE
Q 041113 777 -GIVAIVI 783 (983)
Q Consensus 777 -~~~~i~~ 783 (983)
++|.+.+
T Consensus 205 ~gad~V~i 212 (231)
T cd02801 205 TGVDGVMI 212 (231)
T ss_pred cCCCEEEE
Confidence 7888765
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-06 Score=106.65 Aligned_cols=116 Identities=17% Similarity=0.226 Sum_probs=91.7
Q ss_pred ecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHG 380 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g 380 (983)
..-|.+|. |++.|+|.|+|. +.+|+|++|||+++= ..-.+..+.. +++|-+|+|+|||+
T Consensus 113 ~~tG~lG~--gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~--~~L~nLi~i~d~N~ 188 (661)
T PTZ00089 113 VTTGPLGQ--GIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGH--LGLEKLIVLYDDNK 188 (661)
T ss_pred cCCcchhh--hHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHH--hCCCCEEEEEECCC
Confidence 34588999 999999999985 235999999999864 4555666666 89998899999999
Q ss_pred CccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC----CHHHHHHHHHhhhcc-CCCEEEEEEcCc
Q 041113 381 GAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK----TKVELEEALSMSQHL-GTDRVIEVESCI 452 (983)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~----~~~eL~~aL~~a~~~-~~p~lIeV~~~~ 452 (983)
+.+-... . . ...-++.+..++||+++..|. +.++|.++++++.+. ++|++|++.|-+
T Consensus 189 ~~i~~~~----------~-~----~~~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~~~~P~~I~~~T~k 250 (661)
T PTZ00089 189 ITIDGNT----------D-L----SFTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKSKGKPKLIIVKTTI 250 (661)
T ss_pred cccccCc----------c-c----ccCccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEEeee
Confidence 9775321 0 0 013478899999999999992 799999999998764 799999999875
|
|
| >PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.7e-06 Score=84.74 Aligned_cols=188 Identities=15% Similarity=0.133 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHhhc-CCCceEEEecCcchhhhhhhcCCCcccccccccccccCCC--CCcceeEeecCCCCCccchHHHH
Q 041113 256 LTEPHVAHELSRAL-TSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEF--PHQWIRVAGNRGASGIDGLLSTA 332 (983)
Q Consensus 256 ~~~~~~~~~l~~~l-~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~G~mG~~g~lpaa 332 (983)
+....+.-+|-..+ .+.+-++-|.|--...+.+.+.+.-.+ ..-|++-.-+.. +...-+-..+-|-.|. ++++|
T Consensus 44 LGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTGR~~~f-~TlRq~gGlSGF~~r~ES~~D~f~~GHsst--siSaa 120 (270)
T PF13292_consen 44 LGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTGRRDRF-HTLRQYGGLSGFPKRSESEYDAFGAGHSST--SISAA 120 (270)
T ss_dssp HCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTTTCCCG-GGTTSTTS--SS--TTT-TT--S--SSSS---HHHHH
T ss_pred ccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccCcHHHh-chhhhcCCcCCCCCcccCCCCcccCCccHh--HHHHH
Confidence 33445555565544 355667778887555566666554433 222222110000 1111111233366677 99999
Q ss_pred Hhhhhcc-----CceEEEEEccchh--hhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCC-----CCCCCcccccc
Q 041113 333 IGFAVGC-----NKHVLCVVGDISF--LHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPI-----ADRTEPRILDQ 400 (983)
Q Consensus 333 iGaalA~-----~~~vv~i~GDGsf--~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~-----~~~~~~~~~~~ 400 (983)
+|.+.|+ ++.||+++|||++ .|..-.|-.+.. .+-++ +||+|+|+..|-...-. ......+.|.+
T Consensus 121 ~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~--~~~~l-iVILNDN~mSIs~nvGals~~L~~l~~~~~y~~ 197 (270)
T PF13292_consen 121 LGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGH--LKSNL-IVILNDNEMSISPNVGALSKYLSKLRSSPTYNK 197 (270)
T ss_dssp HHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHH--HT-SE-EEEEEE-SBSSSB--SSHCCC------------
T ss_pred HHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHh--cCCCE-EEEEeCCCcccCCCcchHHHHHHhccchhHHHH
Confidence 9999997 5899999999998 577777877776 56665 77788888766543100 00000001110
Q ss_pred cc-------cc-CC-------------CCCHHHHHHHcCCceeeeC---CHHHHHHHHHhhhccCCCEEEEEEc
Q 041113 401 YF-------YT-TH-------------NISIQNLCLAHGLNHVQVK---TKVELEEALSMSQHLGTDRVIEVES 450 (983)
Q Consensus 401 ~~-------~~-~~-------------~~df~~la~a~G~~~~~v~---~~~eL~~aL~~a~~~~~p~lIeV~~ 450 (983)
.- .. .. .. ...+=+.+|+.|.-+- +.++|.++|+++.+.++|+||+|.|
T Consensus 198 ~k~~~~~~l~~~~~~~~~~~r~~~s~K~~-~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~~~gPvllHV~T 270 (270)
T PF13292_consen 198 LKEDVKSLLKKIPPIEEFAKRIKESLKGF-SPNLFEELGFDYIGPIDGHDLEELIEVLENAKDIDGPVLLHVIT 270 (270)
T ss_dssp --------------------------------CCCHHCT-EEEEEEETT-HHHHHHHHHHHCCSSSEEEEEEE-
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhhh-hHHHHHHcCCeEEeccCCCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 00 00 00 00 1123356688887543 7899999999999899999999986
|
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.5e-06 Score=95.74 Aligned_cols=123 Identities=19% Similarity=0.231 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhhhcCCCEEEEeccCC-------------------CCh----HHHHHHHHHHHHHcCCCcEEEEEcC---
Q 041113 656 PVEVASIATTLVEEGFTAIKLKVARR-------------------ADP----IKDAEVIQEVRKKVGHRIELRVDAN--- 709 (983)
Q Consensus 656 ~~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~----~~d~~~v~~vr~~~g~~~~l~vDaN--- 709 (983)
.+++.+.++.+++.||..|-|+.+.. .++ .-.++.|++||+++|+++.|.+|.|
T Consensus 148 i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~ 227 (338)
T cd04733 148 IDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSAD 227 (338)
T ss_pred HHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHH
Confidence 35567777778889999999998741 122 2236899999999999999999998
Q ss_pred ---CCCCHHHHHHHHhhcccCCCceee-------cCCCC--------------hHHHHHHHhhcCCcEEeCCCccCcCCC
Q 041113 710 ---RNWTYQEALEFGFLIKDCDLQYIE-------EPVQN--------------EEDIIKYCEESGLPVALDETIDKFQKD 765 (983)
Q Consensus 710 ---~~~~~~~a~~~~~~l~~~~i~~iE-------eP~~~--------------~~~~~~l~~~~~ipIa~dEs~~~~~~~ 765 (983)
++|+.++++++++.|++.++.||| +|... .+..+++++.+++||++++.+.+..
T Consensus 228 ~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~-- 305 (338)
T cd04733 228 FQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRA-- 305 (338)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHH--
Confidence 579999999999999999999999 55521 2344688999999999999998865
Q ss_pred hHHHHHhhcCCC-ceEEEE
Q 041113 766 PLNMLEKYAHPG-IVAIVI 783 (983)
Q Consensus 766 ~~~~~~~~~~~~-~~~i~~ 783 (983)
.+..+++.+ +|.|.+
T Consensus 306 ---~a~~~l~~g~aD~V~l 321 (338)
T cd04733 306 ---AMEQALASGAVDGIGL 321 (338)
T ss_pred ---HHHHHHHcCCCCeeee
Confidence 355556544 787653
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.5e-06 Score=89.84 Aligned_cols=162 Identities=17% Similarity=0.172 Sum_probs=105.9
Q ss_pred CCCHHHHHHHHHHhhh-cCCCEEEEeccCCCChHHHHHHHHHHHHHc-CCCcEEEEEcCC-------CCCHHHHHHHHhh
Q 041113 653 NKSPVEVASIATTLVE-EGFTAIKLKVARRADPIKDAEVIQEVRKKV-GHRIELRVDANR-------NWTYQEALEFGFL 723 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~-~G~~~~KiKig~~~~~~~d~~~v~~vr~~~-g~~~~l~vDaN~-------~~~~~~a~~~~~~ 723 (983)
..++++.++.+.+.++ .||.- +++++. |.+.. +-+ ..+-.-.++... ..|.++.+++...
T Consensus 76 ~~~~eeaL~ll~~Ai~~aGy~~-~v~ial--D~AAs--------efyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~ 144 (295)
T PF00113_consen 76 IDDNEEALDLLMEAIKEAGYEP-DVAIAL--DVAAS--------EFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKD 144 (295)
T ss_dssp BSSHHHHHHHHHHHHHHTT-TT-TBEEEE--E--GG--------GGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHccccc-eeeeec--cccHH--------HhhhccCCeEEEeecccccccccccCHHHHHHHHHH
Confidence 3577888887777765 89988 888875 22211 112 011233333322 3588888877665
Q ss_pred c-ccCCCceeecCCC--ChHHHHHHHhhcC--CcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHH
Q 041113 724 I-KDCDLQYIEEPVQ--NEEDIIKYCEESG--LPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLI 797 (983)
Q Consensus 724 l-~~~~i~~iEeP~~--~~~~~~~l~~~~~--ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~ 797 (983)
| ++|.|.+||+|+. |+++|++|.++++ +-|.+|.-..+- + .++...++. .++.+.+|+..+|.+|++++.
T Consensus 145 li~~YPIvsIEDpf~edD~e~w~~lt~~~g~~~~iVGDDl~vTn---~-~ri~~~i~~~~~na~llK~NQigTvte~lea 220 (295)
T PF00113_consen 145 LIKKYPIVSIEDPFDEDDWEGWAKLTKRLGDKIQIVGDDLFVTN---P-KRIKKGIEKKACNALLLKPNQIGTVTETLEA 220 (295)
T ss_dssp HHHHS-EEEEESSS-TT-HHHHHHHHHHHTTTSEEEESTTTTT----H-HHHHHHHHCT--SEEEE-HHHHSSHHHHHHH
T ss_pred HHHhcCeEEEEccccccchHHHHHHHHhhhcceeeecccccccc---h-hhhhccchhhhccchhhhhhhhHHHHHHHHH
Confidence 5 8899999999999 8999999999887 899999876652 2 345554544 478999999999999999999
Q ss_pred HHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhch
Q 041113 798 ARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 798 ~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~ 831 (983)
+++|+++|..++++|.. ||-= ...+|||-++.
T Consensus 221 ~~~a~~~g~~~vvS~rsgEteD--~~iadLaVg~~ 253 (295)
T PF00113_consen 221 VKLAKSAGWGVVVSHRSGETED--TFIADLAVGLG 253 (295)
T ss_dssp HHHHHHTT-EEEEE--SS--S----HHHHHHHHTT
T ss_pred HHHHHHCCceeeccCCCCCcCc--hhHHHHHhccC
Confidence 99999999999999976 3422 24455555543
|
In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E .... |
| >PRK12753 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-06 Score=104.94 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=92.3
Q ss_pred ecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHG 380 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g 380 (983)
...|.+|. |++.|+|.|+|. +.+|+|++|||+++= ..-.+..|.. +++|-+|+|+|||+
T Consensus 111 ~~tG~lG~--gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~--~kL~nLi~ivd~N~ 186 (663)
T PRK12753 111 TTTGPLGQ--GLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGT--LGLGKLIGFYDHNG 186 (663)
T ss_pred cCCCcccc--cHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHH--HCCCCEEEEEECCC
Confidence 45689999 999999999984 257999999999874 3455556666 89998899999999
Q ss_pred CccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceee-eC--CHHHHHHHHHhhhc-cCCCEEEEEEcCcc
Q 041113 381 GAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQ-VK--TKVELEEALSMSQH-LGTDRVIEVESCID 453 (983)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~-v~--~~~eL~~aL~~a~~-~~~p~lIeV~~~~~ 453 (983)
+.+-... ... .+-|+.+..++||+++.. |+ +.++|.++++++.+ .++|++|++.|-+-
T Consensus 187 ~~i~~~~-----------~~~----~~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~~~~P~~I~~~T~kG 248 (663)
T PRK12753 187 ISIDGET-----------EGW----FTDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSVKDKPSLIICRTIIG 248 (663)
T ss_pred CcCCCCh-----------hhh----cChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHHCCCCeEEEEEEEeec
Confidence 8775321 111 124788999999999985 77 78899999998875 48999999998863
|
|
| >PRK12754 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.4e-06 Score=102.64 Aligned_cols=116 Identities=12% Similarity=0.188 Sum_probs=91.6
Q ss_pred ecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhhhc--cchHHHHHhhccCCCEEEEEEeCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFLHD--TNGLAILKQRMKRKPILMLVINNHG 380 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~~~--~~eL~Ta~~~~~~lpv~iiV~NN~g 380 (983)
..-|.+|. |++.|+|.|+|. +.+|+|++|||+++=. .-.+..|.. ++||.+|+|++||+
T Consensus 111 ~stG~LGq--Gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~--~kL~nLi~ivD~N~ 186 (663)
T PRK12754 111 TTTGPLGQ--GIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGT--LKLGKLIAFYDDNG 186 (663)
T ss_pred ccCCcccc--hHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHH--hCCCCEEEEEEcCC
Confidence 45589999 999999999984 3579999999999852 344555665 89998899999999
Q ss_pred CccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceee-eC--CHHHHHHHHHhhhc-cCCCEEEEEEcCc
Q 041113 381 GAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQ-VK--TKVELEEALSMSQH-LGTDRVIEVESCI 452 (983)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~-v~--~~~eL~~aL~~a~~-~~~p~lIeV~~~~ 452 (983)
+++--. .... ...|+.+-.++||.++.+ |+ +.+++.+|++++.+ .++|++|++.|-+
T Consensus 187 ~~idg~-----------~~~~----~~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~Pt~I~~~T~~ 247 (663)
T PRK12754 187 ISIDGH-----------VEGW----FTDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAVTDKPSLLMCKTII 247 (663)
T ss_pred CccCcc-----------hhhc----cCccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Confidence 876521 1111 135899999999999998 66 78999999998875 5899999999886
|
|
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-06 Score=96.01 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=49.3
Q ss_pred eEEEEEEcccCce-eEEEEeecCCccCCCCceEEEeCCCCCChhhHHHH---HHHh-hCCCEEEEEcCCCCCCCCCC
Q 041113 910 LRYQLNVNSKDFC-SFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPI---MKAV-SGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 910 ~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~---~~~l-~~~~~vi~~Dl~G~G~S~~~ 981 (983)
..+.+.++..+.. ++++|...|+ +|+|||+|||+.+...|..+ +..| .++|+|+++|+||||+|+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~y~~~g~-----~~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~ 77 (282)
T TIGR03343 6 TSKFVKINEKGLSNFRIHYNEAGN-----GEAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAV 77 (282)
T ss_pred cceEEEcccccccceeEEEEecCC-----CCeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCC
Confidence 3455556554442 5566676665 78999999999998888643 4445 45699999999999999864
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2 | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.1e-06 Score=96.91 Aligned_cols=115 Identities=20% Similarity=0.229 Sum_probs=84.4
Q ss_pred cCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCC
Q 041113 319 NRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGG 381 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~ 381 (983)
.-|++|. |++.|+|.|+|. +.+|+||+|||.++= +.-.+..|.+ ++|+=+|+|+++|+.
T Consensus 109 stGsLGq--Gl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~--~~L~nLi~i~D~N~~ 184 (332)
T PF00456_consen 109 STGSLGQ--GLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGH--YKLDNLIVIYDSNGI 184 (332)
T ss_dssp --SSTTH--HHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHH--TT-TTEEEEEEEESE
T ss_pred eccchhc--chhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHH--hCCCCEEEEEecCCc
Confidence 4589999 999999999984 357999999999986 3556677777 899877777777766
Q ss_pred ccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeee---CCHHHHHHHHHhhhcc-CCCEEEEEEcCc
Q 041113 382 AIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQV---KTKVELEEALSMSQHL-GTDRVIEVESCI 452 (983)
Q Consensus 382 g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v---~~~~eL~~aL~~a~~~-~~p~lIeV~~~~ 452 (983)
.+--. .+.. ..-|..+--++||.+..+| ++.++|.+||+++... ++|++|.+.|-.
T Consensus 185 q~dg~-----------~~~~----~~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~Tvk 244 (332)
T PF00456_consen 185 QIDGP-----------TDIV----FSEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKASKGKPTVIIARTVK 244 (332)
T ss_dssp ETTEE-----------GGGT----HHSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHSTSS-EEEEEEE-T
T ss_pred ccCCC-----------cccc----cchHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhcCCCCceeecceEE
Confidence 44311 1111 1246788889999999999 5899999999999765 899999999875
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A .... |
| >TIGR00232 tktlase_bact transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.7e-06 Score=103.06 Aligned_cols=117 Identities=16% Similarity=0.217 Sum_probs=91.4
Q ss_pred eecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNH 379 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~ 379 (983)
....|++|. |+|.|+|+|+|. +.+|+|++|||+++= ..-.+..|.. ++||-+|+|++||
T Consensus 106 ~~~tG~lG~--gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~--~~L~nLi~ivd~N 181 (653)
T TIGR00232 106 EATTGPLGQ--GIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGH--LKLGKLIVLYDSN 181 (653)
T ss_pred eeCCcchhc--cHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHH--hCCCcEEEEEeCC
Confidence 355689999 999999999974 245999999999875 2344555555 8999889999999
Q ss_pred CCccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeee-C--CHHHHHHHHHhhhcc-CCCEEEEEEcCc
Q 041113 380 GGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQV-K--TKVELEEALSMSQHL-GTDRVIEVESCI 452 (983)
Q Consensus 380 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v-~--~~~eL~~aL~~a~~~-~~p~lIeV~~~~ 452 (983)
+|.+-... +.. ...++.+..++||.++.+| + +.+++.+|++++.+. ++|++|++.|-+
T Consensus 182 ~~~i~~~~-----------~~~----~~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a~~~~~~P~~I~~~T~~ 243 (653)
T TIGR00232 182 RISIDGAV-----------DGS----FTEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKASKDKPTLIEVTTTI 243 (653)
T ss_pred Ceeecccc-----------ccc----cCccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeee
Confidence 98775221 111 1247899999999999999 4 688999999988765 489999999865
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. |
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.8e-07 Score=100.20 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=45.1
Q ss_pred EeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 927 VQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 927 ~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
|...|+ +|||||+||+++++..|..+++.|+++|+|+++|+||||.|+++
T Consensus 80 Y~~~g~-----g~~vvliHG~~~~~~~w~~~~~~l~~~~~v~~~D~~G~G~S~~~ 129 (354)
T PLN02578 80 YVVQGE-----GLPIVLIHGFGASAFHWRYNIPELAKKYKVYALDLLGFGWSDKA 129 (354)
T ss_pred EEEcCC-----CCeEEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCCCCCCCc
Confidence 355564 78999999999999999999999999999999999999999875
|
|
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-06 Score=94.78 Aligned_cols=54 Identities=33% Similarity=0.609 Sum_probs=46.7
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+++...|... +|+|||+||++++...|..+++.|+++|+|+++|+||||.|+.+
T Consensus 18 ~~~~~~g~~~---~~~vv~~hG~~~~~~~~~~~~~~l~~~~~vi~~D~~G~G~S~~~ 71 (278)
T TIGR03056 18 WHVQDMGPTA---GPLLLLLHGTGASTHSWRDLMPPLARSFRVVAPDLPGHGFTRAP 71 (278)
T ss_pred EEEEecCCCC---CCeEEEEcCCCCCHHHHHHHHHHHhhCcEEEeecCCCCCCCCCc
Confidence 3345556543 78999999999999999999999999999999999999999864
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-06 Score=93.81 Aligned_cols=45 Identities=18% Similarity=0.388 Sum_probs=42.5
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
+|+|||+||++++...|..+...|+++|+||++|+||||.|..+.
T Consensus 16 ~~~iv~lhG~~~~~~~~~~~~~~l~~~~~vi~~D~~G~G~s~~~~ 60 (255)
T PRK10673 16 NSPIVLVHGLFGSLDNLGVLARDLVNDHDIIQVDMRNHGLSPRDP 60 (255)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHhhCCeEEEECCCCCCCCCCCC
Confidence 799999999999999999999999999999999999999998653
|
|
| >KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-06 Score=92.81 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=52.9
Q ss_pred EEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 911 RYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
.+.+.+......+++...... . +++|+|||||+|++...|-..++.|++.++|+++|+||+|+|++|.
T Consensus 67 ~~~v~i~~~~~iw~~~~~~~~-~---~~~plVliHGyGAg~g~f~~Nf~~La~~~~vyaiDllG~G~SSRP~ 134 (365)
T KOG4409|consen 67 KKYVRIPNGIEIWTITVSNES-A---NKTPLVLIHGYGAGLGLFFRNFDDLAKIRNVYAIDLLGFGRSSRPK 134 (365)
T ss_pred eeeeecCCCceeEEEeecccc-c---CCCcEEEEeccchhHHHHHHhhhhhhhcCceEEecccCCCCCCCCC
Confidence 344445444444544433322 2 2789999999999999999999999999999999999999999985
|
|
| >KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.4e-06 Score=86.29 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=96.6
Q ss_pred eecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhhc-cchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLHD-TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
++|.|-.|- .+|.+.|+++|. +.-++++-|||+..-. +-|--.++. -++||++ +|..||.|||=-...
T Consensus 161 yGGnGIVGA--QiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~-LW~LP~I-FvCENN~yGMGTs~~-- 234 (394)
T KOG0225|consen 161 YGGNGIVGA--QIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAA-LWKLPVI-FVCENNHYGMGTSAE-- 234 (394)
T ss_pred cCccceecc--CCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHH-HhCCCEE-EEEccCCCccCcchh--
Confidence 466677777 899999999996 3567789999997532 112112222 1689985 555556687742210
Q ss_pred CCCCccccccccccCCCCCHHHHHHHcCCceeeeCC--HHHHHHHHHhh----hccCCCEEEEEEcCc------------
Q 041113 391 DRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKT--KVELEEALSMS----QHLGTDRVIEVESCI------------ 452 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~--~~eL~~aL~~a----~~~~~p~lIeV~~~~------------ 452 (983)
+ ....+||=+=. .| +++.+|+- .-.+++|.+.| ++.+||.|+|+.|-+
T Consensus 235 ---------R---asa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~s 300 (394)
T KOG0225|consen 235 ---------R---ASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTS 300 (394)
T ss_pred ---------h---hhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCcc
Confidence 0 01233433322 22 67777773 33344554444 455899999999877
Q ss_pred ----------------------------ccchHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 453 ----------------------------DANATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 453 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
-.....++++-.++++.+++|+.++..+++|+.
T Consensus 301 YRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai~k~irkeVdeav~~A~~~p~p~~ 361 (394)
T KOG0225|consen 301 YRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAFATASPEPEP 361 (394)
T ss_pred cchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 123556777889999999999999999999975
|
|
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.2e-06 Score=97.59 Aligned_cols=44 Identities=32% Similarity=0.441 Sum_probs=37.8
Q ss_pred CceEEEeCCCCCChhhHH--HHHHHh--------hCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWI--PIMKAV--------SGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~--~~~~~l--------~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||+++++..|. .+.+.| +++|+||++|+||||+|+.+
T Consensus 69 gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p 122 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKP 122 (360)
T ss_pred CCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCC
Confidence 589999999999998886 555544 67899999999999999865
|
|
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.9e-06 Score=96.55 Aligned_cols=44 Identities=30% Similarity=0.603 Sum_probs=38.7
Q ss_pred CceEEEeCCCCCChhhHHH-HHHHhh----CCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIP-IMKAVS----GSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~-~~~~l~----~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+|||+++..+|.. +++.|+ ++|+||++|+||||+|+++
T Consensus 201 k~~VVLlHG~~~s~~~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p 249 (481)
T PLN03087 201 KEDVLFIHGFISSSAFWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKP 249 (481)
T ss_pred CCeEEEECCCCccHHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCC
Confidence 5799999999999999986 456665 5799999999999999876
|
|
| >cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.5e-05 Score=81.03 Aligned_cols=111 Identities=14% Similarity=0.014 Sum_probs=80.7
Q ss_pred ceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC-CCCC-ccccccccccCCCCCHHHHHHHc
Q 041113 341 KHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA-DRTE-PRILDQYFYTTHNISIQNLCLAH 417 (983)
Q Consensus 341 ~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~-~~~~-~~~~~~~~~~~~~~df~~la~a~ 417 (983)
..|+++.||| ++-..++.|.-+.+ -+.+|++||+||..|++-....-. .... .......-......|...++.++
T Consensus 152 ~~v~v~gGDG~~ydIG~~~l~ha~~--r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIGYGGLDHVLA--SGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccchhhHHHHHH--cCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 5899999999 56788999988887 688999999999999986321000 0000 00000100112357999999999
Q ss_pred CCcee-e--eC-CHHHHHHHHHhhhccCCCEEEEEEcCcc
Q 041113 418 GLNHV-Q--VK-TKVELEEALSMSQHLGTDRVIEVESCID 453 (983)
Q Consensus 418 G~~~~-~--v~-~~~eL~~aL~~a~~~~~p~lIeV~~~~~ 453 (983)
|+.|+ + +. ++.++.+++++|.+.+||.+|+|..+.-
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~~~~Gps~I~v~sPC~ 269 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAEAYDGPSLIIAYSPCI 269 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHhcCCCCEEEEEEccCc
Confidence 98765 3 43 7899999999999999999999998764
|
This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra |
| >cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.9e-06 Score=87.89 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=83.0
Q ss_pred EeecCCCCCccchHHHHHhhhhcc---C-------ceEEEEEccchh--hhccchHHHHHhhccCCC---EEEEEEeCCC
Q 041113 316 VAGNRGASGIDGLLSTAIGFAVGC---N-------KHVLCVVGDISF--LHDTNGLAILKQRMKRKP---ILMLVINNHG 380 (983)
Q Consensus 316 ~~~~~G~mG~~g~lpaaiGaalA~---~-------~~vv~i~GDGsf--~~~~~eL~Ta~~~~~~lp---v~iiV~NN~g 380 (983)
..++-+-+|. ..|.|+|++.|. + .-+|++.|||+| +=.+.|-..+++ -.++| +++||.| |+
T Consensus 108 l~~npS~l~~--~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~-l~~lp~gg~ifvveN-Nq 183 (265)
T cd02016 108 LAPNPSHLEA--VNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSN-LPGYTTGGTIHIVVN-NQ 183 (265)
T ss_pred ecCCCccccc--ccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHH-hcCCCCCCEEEEEEe-CC
Confidence 4456677777 899999999986 2 245789999997 334555555444 26787 5555555 56
Q ss_pred CccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhh----ccCCCEEEEEEcCcc
Q 041113 381 GAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQ----HLGTDRVIEVESCID 453 (983)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~----~~~~p~lIeV~~~~~ 453 (983)
|++--.. .. .....+..+.|++||+++++|+ +++++.++.+.|. +.++|+|||+.+.+.
T Consensus 184 ~g~sT~~-----------~~---~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~ 248 (265)
T cd02016 184 IGFTTDP-----------RD---SRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRR 248 (265)
T ss_pred EEEEecH-----------HH---hcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Confidence 7765211 00 0124578899999999999998 6777766666554 458999999999873
|
OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle. |
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.5e-06 Score=70.77 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=39.9
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~ 980 (983)
+..|+++||++.++..|..+++.|.+. |.|+++|+||||+|+.
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S~g 59 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDHRGHGRSEG 59 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECCCcCCCCCC
Confidence 678999999999999999999999775 9999999999999984
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=96.98 Aligned_cols=132 Identities=17% Similarity=0.283 Sum_probs=88.0
Q ss_pred cCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD 391 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~ 391 (983)
+-|..|. ++|.|+|.++|. +..|+|++|||+++- ..-.+..+.. +++|+ ++|+|||+|++-.......
T Consensus 109 ~~G~~g~--~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~--~~l~~-i~ii~~N~~~i~~~~~~~~ 183 (617)
T TIGR00204 109 SAGHSST--SISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGD--LKTDM-IVILNDNEMSISENVGALS 183 (617)
T ss_pred CCCchHh--HHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHh--cCCCE-EEEEECCCcccCCCchHHH
Confidence 4577788 999999999985 468999999999864 4555666666 89998 8888999987653210000
Q ss_pred -----CCCccccc-------cccccCCC-CC-H-H-------------HHHHHcCCcee-eeC--CHHHHHHHHHhhhcc
Q 041113 392 -----RTEPRILD-------QYFYTTHN-IS-I-Q-------------NLCLAHGLNHV-QVK--TKVELEEALSMSQHL 440 (983)
Q Consensus 392 -----~~~~~~~~-------~~~~~~~~-~d-f-~-------------~la~a~G~~~~-~v~--~~~eL~~aL~~a~~~ 440 (983)
.+..+.|. ......+. .+ + . .+-++||+.+. .|+ +.++|.++|+.+.+.
T Consensus 184 ~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~~ 263 (617)
T TIGR00204 184 NHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIETLKNAKKL 263 (617)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHHHHHHHhcC
Confidence 00000000 00000000 01 1 1 13677999888 666 899999999988777
Q ss_pred CCCEEEEEEcCcccc
Q 041113 441 GTDRVIEVESCIDAN 455 (983)
Q Consensus 441 ~~p~lIeV~~~~~~~ 455 (983)
++|++|+|.|.+-.-
T Consensus 264 ~~P~~i~~~T~KGkG 278 (617)
T TIGR00204 264 KGPVFLHIQTKKGKG 278 (617)
T ss_pred CCCEEEEEEecCCCC
Confidence 899999999987554
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.5e-05 Score=89.46 Aligned_cols=122 Identities=19% Similarity=0.198 Sum_probs=94.0
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CCh----HHHHHHHHHHHHHcCCCcEEEEEcC----
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADP----IKDAEVIQEVRKKVGHRIELRVDAN---- 709 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~----~~d~~~v~~vr~~~g~~~~l~vDaN---- 709 (983)
+++.+.++.+.+.||..|+|+.+.+ .++ ....+.+++||+++|+++.|.++.|
T Consensus 141 ~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~ 220 (327)
T cd02803 141 EDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDF 220 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhcc
Confidence 4566777777889999999998731 011 1226899999999999999998887
Q ss_pred --CCCCHHHHHHHHhhcccCCCceee-------cCCC-----------ChHHHHHHHhhcCCcEEeCCCccCcCCChHHH
Q 041113 710 --RNWTYQEALEFGFLIKDCDLQYIE-------EPVQ-----------NEEDIIKYCEESGLPVALDETIDKFQKDPLNM 769 (983)
Q Consensus 710 --~~~~~~~a~~~~~~l~~~~i~~iE-------eP~~-----------~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~ 769 (983)
++|+.++++++++.|+++++.||+ +|.. +.+..+.+++.+++||++.+.+.+..+
T Consensus 221 ~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~----- 295 (327)
T cd02803 221 VPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEV----- 295 (327)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHH-----
Confidence 457999999999999999999994 5432 345567888889999999999988653
Q ss_pred HHhhcCC-CceEEEE
Q 041113 770 LEKYAHP-GIVAIVI 783 (983)
Q Consensus 770 ~~~~~~~-~~~~i~~ 783 (983)
+..+++. ++|.|.+
T Consensus 296 a~~~l~~g~aD~V~i 310 (327)
T cd02803 296 AEEILAEGKADLVAL 310 (327)
T ss_pred HHHHHHCCCCCeeee
Confidence 5555555 6787654
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.7e-06 Score=100.82 Aligned_cols=52 Identities=23% Similarity=0.416 Sum_probs=45.2
Q ss_pred EeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 927 VQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 927 ~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+...|.+. +|+|||+|||++++..|.++++.|.++|+|+++|+||||.|+.+
T Consensus 17 ~~~~g~~~---~~~ivllHG~~~~~~~w~~~~~~L~~~~~Vi~~D~~G~G~S~~~ 68 (582)
T PRK05855 17 VYEWGDPD---RPTVVLVHGYPDNHEVWDGVAPLLADRFRVVAYDVRGAGRSSAP 68 (582)
T ss_pred EEEcCCCC---CCeEEEEcCCCchHHHHHHHHHHhhcceEEEEecCCCCCCCCCC
Confidence 34445433 78999999999999999999999988899999999999999864
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.4e-06 Score=90.05 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=38.2
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
.+.|+|+|||++++..|..+++.|.+ +|+|+++|+||||.|+.
T Consensus 25 ~~~v~llHG~~~~~~~~~~~~~~l~~~g~~via~D~~G~G~S~~ 68 (276)
T PHA02857 25 KALVFISHGAGEHSGRYEELAENISSLGILVFSHDHIGHGRSNG 68 (276)
T ss_pred CEEEEEeCCCccccchHHHHHHHHHhCCCEEEEccCCCCCCCCC
Confidence 45666779999999999999999976 59999999999999974
|
|
| >COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.4e-05 Score=91.62 Aligned_cols=118 Identities=24% Similarity=0.293 Sum_probs=90.1
Q ss_pred CCccchHHHHHhhhhccCceEEEEEccchhhhc-cchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccc
Q 041113 323 SGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHD-TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQY 401 (983)
Q Consensus 323 mG~~g~lpaaiGaalA~~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~ 401 (983)
||- +++.|-|+.++..+++|+++|||+|.|+ +..|..|+. .+.+++++|++|..=.|--..+... .++ ..
T Consensus 430 mGs--sig~a~g~~~~~~k~~va~iGDsTF~HsGi~~l~nAV~--n~~~~~~vvLdN~~tAMTGgQp~pg----~~~-~~ 500 (640)
T COG4231 430 MGS--SIGIAGGLSFASTKKIVAVIGDSTFFHSGILALINAVY--NKANILVVVLDNRTTAMTGGQPHPG----TGV-AA 500 (640)
T ss_pred ccc--hhhhccccccccCCceEEEeccccccccCcHHHHHHHh--cCCCeEEEEEeccchhccCCCCCCC----ccc-cc
Confidence 444 6777777777778999999999999996 788999997 7899999999999887764322111 011 11
Q ss_pred ccc-CCCCCHHHHHHHcCCceeee---CCHHHHHHHHHhhhccCCCEEEEEE
Q 041113 402 FYT-THNISIQNLCLAHGLNHVQV---KTKVELEEALSMSQHLGTDRVIEVE 449 (983)
Q Consensus 402 ~~~-~~~~df~~la~a~G~~~~~v---~~~~eL~~aL~~a~~~~~p~lIeV~ 449 (983)
.++ ...++.+.+++++|+..+.+ -+.+++.++++++++..+|+||=..
T Consensus 501 ~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~~gpsViiak 552 (640)
T COG4231 501 EGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEVPGPSVIIAK 552 (640)
T ss_pred CCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcCCCceEEEEc
Confidence 122 24689999999999987654 3688999999999999999887654
|
|
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.9e-05 Score=87.66 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CC----hHHHHHHHHHHHHHcCCCcEEE-----EEc
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------AD----PIKDAEVIQEVRKKVGHRIELR-----VDA 708 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~----~~~d~~~v~~vr~~~g~~~~l~-----vDa 708 (983)
+++.+.++.+++.||..++|+.+.+ .+ ....++.|++||+++|+++.+. .|.
T Consensus 137 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~ 216 (353)
T cd02930 137 EDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDL 216 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEeccccc
Confidence 4566677777889999999987421 11 3445789999999999997765 565
Q ss_pred C-CCCCHHHHHHHHhhcccCCC-------ceeecCCCC----------hHHHHHHHhhcCCcEEeCCCccCcCCChHHHH
Q 041113 709 N-RNWTYQEALEFGFLIKDCDL-------QYIEEPVQN----------EEDIIKYCEESGLPVALDETIDKFQKDPLNML 770 (983)
Q Consensus 709 N-~~~~~~~a~~~~~~l~~~~i-------~~iEeP~~~----------~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~ 770 (983)
+ ++|+.++++++++.|+++++ .|.|+|++. .+..+++++.+++||+..+.+.+.. .+
T Consensus 217 ~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~-----~a 291 (353)
T cd02930 217 VEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPE-----VA 291 (353)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHH-----HH
Confidence 4 66899999999999999885 456777651 2234688999999999999999875 35
Q ss_pred HhhcCCC-ceEEE
Q 041113 771 EKYAHPG-IVAIV 782 (983)
Q Consensus 771 ~~~~~~~-~~~i~ 782 (983)
..+++.+ +|.+.
T Consensus 292 ~~~i~~g~~D~V~ 304 (353)
T cd02930 292 ERLLADGDADMVS 304 (353)
T ss_pred HHHHHCCCCChhH
Confidence 5666544 67765
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PLN02234 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.9e-05 Score=91.37 Aligned_cols=134 Identities=19% Similarity=0.214 Sum_probs=88.1
Q ss_pred eecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeCCCCccccCCCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPI 389 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~ 389 (983)
..+-|.+|. ||++|+|.|+|. +.+|+|++|||+++ +.+-.+..+.+ ++-+ ++||+|+|+..+....+.
T Consensus 173 ~~~tGslg~--glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~--~~~n-livIlddN~~~~~~~~q~ 247 (641)
T PLN02234 173 SFGTGHSST--TLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGY--LHSN-MIVILNDNKQVSLPTANL 247 (641)
T ss_pred EECCCchHH--HHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhh--hCCC-EEEEEECCCCCccccccc
Confidence 355689999 999999999986 46899999999986 45566666664 4545 567777777643321000
Q ss_pred CCCCCc-cccccccc---cCCC---CCHHHHHHHcCCcee-eeC--CHHHHHHHHHhhhcc--CCCEEEEEEcCcccc
Q 041113 390 ADRTEP-RILDQYFY---TTHN---ISIQNLCLAHGLNHV-QVK--TKVELEEALSMSQHL--GTDRVIEVESCIDAN 455 (983)
Q Consensus 390 ~~~~~~-~~~~~~~~---~~~~---~df~~la~a~G~~~~-~v~--~~~eL~~aL~~a~~~--~~p~lIeV~~~~~~~ 455 (983)
...... ....++.. .... -+....-++||+++. .|+ +.++|.++|+++.+. ++|.+|.+.|-+..-
T Consensus 248 ~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGkG 325 (641)
T PLN02234 248 DGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRG 325 (641)
T ss_pred CCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCCC
Confidence 000000 00000000 0000 145678899999999 787 899999999987643 589999999987653
|
|
| >PLN02225 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00017 Score=86.12 Aligned_cols=192 Identities=11% Similarity=0.106 Sum_probs=112.8
Q ss_pred CCHHHHHHHHHhhc-CCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCC--cceeEeecCCCCCccchHHHH
Q 041113 256 LTEPHVAHELSRAL-TSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPH--QWIRVAGNRGASGIDGLLSTA 332 (983)
Q Consensus 256 ~~~~~~~~~l~~~l-~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~G~mG~~g~lpaa 332 (983)
+....+.-+|-..+ .+.+-|+-|.|--...+.+.+.+...+ .. |++-.-+..+. ..-+-..+-|-.+. ++++|
T Consensus 123 LGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKiLTGR~~~f-~~-Rq~~GlsGf~~r~ES~~D~f~~GHssT--SiSaa 198 (701)
T PLN02225 123 FAAIELTLALHYVFRAPVDNILWDAVEQTYAHKVLTRRWSAI-PS-RQKNGISGVTSQLESEYDSFGTGHGCN--SISAG 198 (701)
T ss_pred ccHHHHHHHHHHHhCCCCCceeeccccccchhhHhcCChhhc-Cc-cccCCcCCCCCCCCCCCCCCCCChHHH--HHHHH
Confidence 45556655665544 345566668876444455555554443 22 44321111111 11111223355566 89999
Q ss_pred Hhhhhcc-----CceEEEEEccchh--hhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCC----ccccccc
Q 041113 333 IGFAVGC-----NKHVLCVVGDISF--LHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTE----PRILDQY 401 (983)
Q Consensus 333 iGaalA~-----~~~vv~i~GDGsf--~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~----~~~~~~~ 401 (983)
+|.+.|+ ++.||+++|||++ .|..-.|-.+.. .+-+ +|||+|+|..+|-+....+.... ..+..+.
T Consensus 199 lG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~--~~~~-livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l 275 (701)
T PLN02225 199 LGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGY--LDSN-MIVILNDSRHSLHPNMEEGSKASISALSSIMSKI 275 (701)
T ss_pred HHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhc--cCCC-EEEEEeCCCCCCCCCCCCccCCccchHHHHHHHH
Confidence 9999996 5689999999998 566677777765 4556 58889999988876511000000 0000000
Q ss_pred -----cc-----------cCCCC--CH---------------H-HHHHHcCCceeeeC---CHHHHHHHHHhhhccC--C
Q 041113 402 -----FY-----------TTHNI--SI---------------Q-NLCLAHGLNHVQVK---TKVELEEALSMSQHLG--T 442 (983)
Q Consensus 402 -----~~-----------~~~~~--df---------------~-~la~a~G~~~~~v~---~~~eL~~aL~~a~~~~--~ 442 (983)
|. ..+.. .+ . .+=+.||++|.-+- +.++|.++|+++.+.+ +
T Consensus 276 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~~~~~ 355 (701)
T PLN02225 276 QSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMG 355 (701)
T ss_pred hccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcCCCCC
Confidence 00 00000 00 1 24467788887543 7899999999987765 9
Q ss_pred CEEEEEEcCccc
Q 041113 443 DRVIEVESCIDA 454 (983)
Q Consensus 443 p~lIeV~~~~~~ 454 (983)
|+||+|.|.+..
T Consensus 356 PvlvHv~T~KGk 367 (701)
T PLN02225 356 PVLVHVITEENR 367 (701)
T ss_pred CEEEEEEecCCC
Confidence 999999998874
|
|
| >COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.6e-05 Score=74.68 Aligned_cols=116 Identities=19% Similarity=0.220 Sum_probs=83.9
Q ss_pred ecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
.+-|++|. |+|.|+|.+++. +.+|++++|||-..- ++-...++++ |+|.=+|.+++-|.... .
T Consensus 116 ~stGSLGq--GLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah--~~L~NLiaivD~N~~Ql----d-- 185 (243)
T COG3959 116 VSTGSLGQ--GLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAH--YKLDNLIAIVDRNKLQL----D-- 185 (243)
T ss_pred ecCCcccc--cchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHH--hccCcEEEEEecCCccc----C--
Confidence 44588898 888888888874 579999999999864 4566778887 99965555554443211 0
Q ss_pred CCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhhcc-CCCEEEEEEcC
Q 041113 391 DRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQHL-GTDRVIEVESC 451 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~~~-~~p~lIeV~~~ 451 (983)
...+.. .+.-++..-=+|||.+..+|+ +.+++.++|+.+... ++|.+|=+.+-
T Consensus 186 -----G~t~~i---~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa~Tv 241 (243)
T COG3959 186 -----GETEEI---MPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIAKTV 241 (243)
T ss_pred -----Cchhhc---cCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhccCCCCeEEEEecc
Confidence 011111 123468888899999999998 699999999999764 49999987654
|
|
| >cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.6e-05 Score=84.23 Aligned_cols=91 Identities=14% Similarity=0.069 Sum_probs=64.7
Q ss_pred ecCCCCCccchHHHHHhhhhcc------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCCcc
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGGAI 383 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~ 383 (983)
..-|++|. |++.|+|.|+|. +.+|+||+|||.++= ..-.+..+.+ ++++=+|+|+|+|+..+
T Consensus 115 ~sTGSLGq--GLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~--~kL~NLivIvD~N~~qi 190 (386)
T cd02017 115 FPTVSMGL--GPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAR--EKLDNLIFVVNCNLQRL 190 (386)
T ss_pred eCCchHHH--HHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHH--hCCCCEEEEEECCCCcc
Confidence 45589999 999999988853 367999999999974 4555666666 89866777888777644
Q ss_pred ccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC
Q 041113 384 FSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK 425 (983)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~ 425 (983)
--. .+.. . ...-|+.+.-+|||.+...|+
T Consensus 191 dG~-----------t~~v-~-~~~e~l~~kf~AfGW~vi~V~ 219 (386)
T cd02017 191 DGP-----------VRGN-G-KIIQELEGIFRGAGWNVIKVI 219 (386)
T ss_pred CCc-----------cccc-c-cCchhHHHHHHhcCCEEEEEe
Confidence 311 0000 0 012478888999999999884
|
coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme. |
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.5e-05 Score=87.02 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=39.6
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
+|+|||+||++.++..|.+++..|.+ +|+|+++|+||||.|..
T Consensus 18 ~p~vvliHG~~~~~~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~ 61 (273)
T PLN02211 18 PPHFVLIHGISGGSWCWYKIRCLMENSGYKVTCIDLKSAGIDQS 61 (273)
T ss_pred CCeEEEECCCCCCcCcHHHHHHHHHhCCCEEEEecccCCCCCCC
Confidence 78999999999999999999999975 69999999999998753
|
|
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.3e-05 Score=90.30 Aligned_cols=44 Identities=27% Similarity=0.434 Sum_probs=41.6
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||++.+...|..+++.|+++|+|+++|+||||.|+++
T Consensus 105 ~p~vvllHG~~~~~~~~~~~~~~L~~~~~vi~~D~rG~G~S~~~ 148 (402)
T PLN02894 105 APTLVMVHGYGASQGFFFRNFDALASRFRVIAIDQLGWGGSSRP 148 (402)
T ss_pred CCEEEEECCCCcchhHHHHHHHHHHhCCEEEEECCCCCCCCCCC
Confidence 78999999999999999999999998999999999999999865
|
|
| >COG0021 TktA Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.9e-05 Score=85.70 Aligned_cols=118 Identities=18% Similarity=0.206 Sum_probs=90.0
Q ss_pred ecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhhhc-cchHHHHHhhccCCCEEEEEEeCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFLHD-TNGLAILKQRMKRKPILMLVINNHGG 381 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~~lpv~iiV~NN~g~ 381 (983)
..-|.+|. |++.|+|.++|. +..|+||+|||++|=. .+|-...+- .++|.=+|++.++|..
T Consensus 113 ~TTGPLGQ--GianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG-~l~L~kLIvlyD~N~I 189 (663)
T COG0021 113 ATTGPLGQ--GLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAG-HLKLGKLIVLYDSNDI 189 (663)
T ss_pred eccCccch--hHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHh-hcCCCcEEEEEeCCCc
Confidence 44599999 999999999972 3689999999999975 344443332 3899888999998877
Q ss_pred ccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC---CHHHHHHHHHhhhc-cCCCEEEEEEcCcc
Q 041113 382 AIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK---TKVELEEALSMSQH-LGTDRVIEVESCID 453 (983)
Q Consensus 382 g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~---~~~eL~~aL~~a~~-~~~p~lIeV~~~~~ 453 (983)
.|--. .+.. .+-|..+=-+|||.+..++. +.+++.+|+++|.+ .++|++|+|+|-..
T Consensus 190 siDG~-----------~~~~----f~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~~dkPtlI~~kTiIG 250 (663)
T COG0021 190 SIDGD-----------TSLS----FTEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKASTDKPTLIIVKTIIG 250 (663)
T ss_pred eeccC-----------cccc----cchhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCCeEEEEEeeee
Confidence 65421 1111 13467778899999999665 49999999999987 67999999998753
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.8e-05 Score=87.10 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=38.6
Q ss_pred CceEEEeCCCCCChh-hHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGE-EWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~-~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
+++|||+|||+++.. .|..+.+.|++ +|+|+++|+||||.|+.+
T Consensus 87 ~~~iv~lHG~~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~ 132 (349)
T PLN02385 87 KAAVCFCHGYGDTCTFFFEGIARKIASSGYGVFAMDYPGFGLSEGL 132 (349)
T ss_pred CeEEEEECCCCCccchHHHHHHHHHHhCCCEEEEecCCCCCCCCCC
Confidence 678999999999876 47899999976 699999999999999864
|
|
| >KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.5e-05 Score=80.58 Aligned_cols=68 Identities=22% Similarity=0.418 Sum_probs=52.4
Q ss_pred EEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCC--CEEEEEcCCCCCCCCCC
Q 041113 911 RYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGS--ARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~--~~vi~~Dl~G~G~S~~~ 981 (983)
...+.+++....++.++....... +|.++|+||.|.|..+|..+...|..+ .+|+|+||||||+|...
T Consensus 50 kedv~i~~~~~t~n~Y~t~~~~t~---gpil~l~HG~G~S~LSfA~~a~el~s~~~~r~~a~DlRgHGeTk~~ 119 (343)
T KOG2564|consen 50 KEDVSIDGSDLTFNVYLTLPSATE---GPILLLLHGGGSSALSFAIFASELKSKIRCRCLALDLRGHGETKVE 119 (343)
T ss_pred ccccccCCCcceEEEEEecCCCCC---ccEEEEeecCcccchhHHHHHHHHHhhcceeEEEeeccccCccccC
Confidence 444566666655555555443323 899999999999999999999988654 89999999999998754
|
|
| >cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.9e-05 Score=77.18 Aligned_cols=107 Identities=19% Similarity=0.172 Sum_probs=72.5
Q ss_pred ecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhcc-chHHHHHh--hccCCCEEEEEEeCCCCccccCCCCCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDT-NGLAILKQ--RMKRKPILMLVINNHGGAIFSLLPIADRT 393 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~-~eL~Ta~~--~~~~lpv~iiV~NN~g~g~~~~~~~~~~~ 393 (983)
..-|.+|+ +++.|+|+++.+ +..|+|++|||.+.=.. ...|-+.+ ..+++.-++.|++||+|.|-...
T Consensus 59 ~~~G~LG~--gLs~A~G~a~d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt------ 130 (227)
T cd02011 59 HEGGELGY--SLSHAYGAVFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPT------ 130 (227)
T ss_pred ecccchhh--HHHHHHHhhhcCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCc------
Confidence 44589999 999999999987 88999999999965321 22233221 01456566777788888775221
Q ss_pred CccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhhc
Q 041113 394 EPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQH 439 (983)
Q Consensus 394 ~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~~ 439 (983)
.. .....-++.+..++||.+.+.|+ +++++.++++++++
T Consensus 131 ---~~----~~~~~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~ 171 (227)
T cd02011 131 ---IL----ARISHEELEALFRGYGYEPYFVEGDDPETMHQAMAATLD 171 (227)
T ss_pred ---cc----cccCchhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHH
Confidence 00 11124578999999999999997 55566666665553
|
This enzyme requires divalent magnesium ions and TPP for activity. |
| >COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0003 Score=80.67 Aligned_cols=194 Identities=14% Similarity=0.065 Sum_probs=106.8
Q ss_pred CCHHHHHHHHHhhc-CCCceEEEecCcchhhhhhhcCCCcccccccccccccC-CC-CCcceeEeecCCCCCccchHHHH
Q 041113 256 LTEPHVAHELSRAL-TSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNS-EF-PHQWIRVAGNRGASGIDGLLSTA 332 (983)
Q Consensus 256 ~~~~~~~~~l~~~l-~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~-~~~~~~~~~~~G~mG~~g~lpaa 332 (983)
+-...+.-+|-... .+.+.++-|.|--..-+.+.+.+.-.+ ..=|++-.-+ +. +...-+-..+-|-.+. ++++|
T Consensus 48 LGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKiLTGR~e~f-~tlRq~~GlsGf~~r~ESe~D~f~~GHsST--SiSaa 124 (627)
T COG1154 48 LGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKILTGRREQF-DTLRQKDGLSGFPKREESEHDWFGVGHSST--SISAA 124 (627)
T ss_pred cChhhhhHHHHHHhCCCCCCeEEecCcccchhHHhcCchhhc-chhhhcCCCCCCCCcccCCCcccccCchHH--HHHHH
Confidence 44455555565544 345666667776333344444332221 1111111000 00 1111111223355556 89999
Q ss_pred Hhhhhcc-----CceEEEEEccchh--hhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCC-----CCCCCccccc-
Q 041113 333 IGFAVGC-----NKHVLCVVGDISF--LHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPI-----ADRTEPRILD- 399 (983)
Q Consensus 333 iGaalA~-----~~~vv~i~GDGsf--~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~-----~~~~~~~~~~- 399 (983)
+|.+.|. ++.||+++|||++ .|.+-.|-.+-. +.+-| .|||+|+|...|-.+.-. ........|+
T Consensus 125 lG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~ag~-~~~~~-~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~ 202 (627)
T COG1154 125 LGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAGA-DLKSN-LIVILNDNEMSISPNVGALSKHLARLRSGPFYQS 202 (627)
T ss_pred hhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhhhh-ccCCC-EEEEEeCCCcccCCCccHHHHHHHHHhccchHHH
Confidence 9999884 5789999999997 566666666542 12344 588889998776533100 0000000000
Q ss_pred ------cc---cccC---------CC----CCHHHHHHHcCCceeeeC---CHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 400 ------QY---FYTT---------HN----ISIQNLCLAHGLNHVQVK---TKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 400 ------~~---~~~~---------~~----~df~~la~a~G~~~~~v~---~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
+. ++.. .+ .....+=+.||++|.-.- +.++|..+|+.+.+.++|+||+|.|.+..
T Consensus 203 ~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd~~gPvllHv~T~KGK 282 (627)
T COG1154 203 LREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTLKNAKDLKGPVLLHVVTKKGK 282 (627)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence 00 0000 00 111236677899887543 79999999999999999999999998753
|
|
| >PLN02582 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.6e-05 Score=89.77 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=81.8
Q ss_pred ecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeCCCC-cc------
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINNHGG-AI------ 383 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN~g~-g~------ 383 (983)
.+-|.+|. +++.|+|.|+|. ++.|+|++|||++. +..-.|-.+.. +++|+++||-|| +. .+
T Consensus 141 ~~~G~~g~--~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ealn~a~~--~~~~li~iv~~N-~~~s~~~~~~~ 215 (677)
T PLN02582 141 FGTGHSST--TISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGY--LDSDMIVILNDN-KQVSLPTATLD 215 (677)
T ss_pred eccchhhh--hHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHHHHHHHHh--hCcCEEEEEECC-CCccccccccC
Confidence 45588899 999999999985 56899999999986 44556666665 788865555444 44 11
Q ss_pred --ccCCCCCCC-------CCccccc-------cccccCCCC--CH-H---------------HHHHHcCCcee-eeC--C
Q 041113 384 --FSLLPIADR-------TEPRILD-------QYFYTTHNI--SI-Q---------------NLCLAHGLNHV-QVK--T 426 (983)
Q Consensus 384 --~~~~~~~~~-------~~~~~~~-------~~~~~~~~~--df-~---------------~la~a~G~~~~-~v~--~ 426 (983)
-+.. +.. +....+. +.....+.. ++ . .+-++||+.|. .|+ +
T Consensus 216 s~~~~v--g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd 293 (677)
T PLN02582 216 GPAPPV--GALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHN 293 (677)
T ss_pred CCCCCc--cHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCC
Confidence 1110 000 0000000 000000000 00 0 24678999987 555 8
Q ss_pred HHHHHHHHHhhhcc--CCCEEEEEEcCccc
Q 041113 427 KVELEEALSMSQHL--GTDRVIEVESCIDA 454 (983)
Q Consensus 427 ~~eL~~aL~~a~~~--~~p~lIeV~~~~~~ 454 (983)
.++|.++|+++.+. ++|+||.|.|-+..
T Consensus 294 ~~~L~~al~~~k~~~~~~P~vihv~T~KGk 323 (677)
T PLN02582 294 IDDLVTILREVKSTKTTGPVLIHVVTEKGR 323 (677)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEecCCC
Confidence 99999999998764 69999999998854
|
|
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.8e-05 Score=85.52 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=38.8
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhh-CCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVS-GSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~-~~~~vi~~Dl~G~G~S~~~ 981 (983)
+++|||+||++.+...|..++..|. .+|+|+++|+||||.|+++
T Consensus 54 ~~~vll~HG~~~~~~~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~ 98 (330)
T PRK10749 54 DRVVVICPGRIESYVKYAELAYDLFHLGYDVLIIDHRGQGRSGRL 98 (330)
T ss_pred CcEEEEECCccchHHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCC
Confidence 5799999999999999999987664 5699999999999999753
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.1e-05 Score=87.60 Aligned_cols=50 Identities=30% Similarity=0.593 Sum_probs=43.7
Q ss_pred eecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCC
Q 041113 928 QEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKM 980 (983)
Q Consensus 928 ~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~ 980 (983)
...|.+. +++|||+|||+++...|..+.+.|.+.|+|+++|+||||.|..
T Consensus 124 ~~~g~~~---~~~vl~~HG~~~~~~~~~~~~~~l~~~~~v~~~d~~g~G~s~~ 173 (371)
T PRK14875 124 LRLGEGD---GTPVVLIHGFGGDLNNWLFNHAALAAGRPVIALDLPGHGASSK 173 (371)
T ss_pred ecccCCC---CCeEEEECCCCCccchHHHHHHHHhcCCEEEEEcCCCCCCCCC
Confidence 4445433 7899999999999999999999999889999999999999954
|
|
| >TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00018 Score=88.50 Aligned_cols=121 Identities=13% Similarity=0.074 Sum_probs=85.0
Q ss_pred eEeecCCCCCccchHHHHHhhhhcc----C-------ceEEEEEccchh--hhccchHHHHHhhccCCCE--EEEEEeCC
Q 041113 315 RVAGNRGASGIDGLLSTAIGFAVGC----N-------KHVLCVVGDISF--LHDTNGLAILKQRMKRKPI--LMLVINNH 379 (983)
Q Consensus 315 ~~~~~~G~mG~~g~lpaaiGaalA~----~-------~~vv~i~GDGsf--~~~~~eL~Ta~~~~~~lpv--~iiV~NN~ 379 (983)
....|-+-++. -.|.+.|.+.|. + .-+|++.|||+| +=.+.|--.++. -+++|+ +|+|+.||
T Consensus 309 ~l~~npSHLea--v~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~-l~~lPvGGtIfvveNN 385 (929)
T TIGR00239 309 ALAFNPSHLEI--VSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSK-LRGYSVGGTIHIIINN 385 (929)
T ss_pred eecCCCccccc--ccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHH-hcCCCCCCEEEEEEeC
Confidence 34566677888 899999999985 2 245889999998 334445444443 278998 66666667
Q ss_pred CCccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 380 GGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 380 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
+|++--.. .. ........+.|++||+++++|+ +++....+.+.|. +.+||+|||+.+.+
T Consensus 386 qyg~tT~~-----------~~---~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR 450 (929)
T TIGR00239 386 QIGFTTNP-----------LD---ARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYR 450 (929)
T ss_pred CEEEEEcH-----------HH---hcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEecc
Confidence 78775210 00 0123467889999999999998 6777766666654 45799999999976
|
The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase. |
| >KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=2e-05 Score=87.61 Aligned_cols=42 Identities=38% Similarity=0.680 Sum_probs=39.4
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC--CEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS--ARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~--~~vi~~Dl~G~G~S~ 979 (983)
+|||||+|||+++..+|+.+++.|++. ++|+++|++|||.|+
T Consensus 58 ~~pvlllHGF~~~~~~w~~~~~~L~~~~~~~v~aiDl~G~g~~s 101 (326)
T KOG1454|consen 58 KPPVLLLHGFGASSFSWRRVVPLLSKAKGLRVLAIDLPGHGYSS 101 (326)
T ss_pred CCcEEEeccccCCcccHhhhccccccccceEEEEEecCCCCcCC
Confidence 799999999999999999999999988 999999999999444
|
|
| >PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00018 Score=88.99 Aligned_cols=116 Identities=14% Similarity=0.071 Sum_probs=79.7
Q ss_pred cCCCCCccchHHHHHhhhhcc-----C------ceEEEEEccchh--hhccchHHHHHhhccCCC---EEEEEEeCCCCc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-----N------KHVLCVVGDISF--LHDTNGLAILKQRMKRKP---ILMLVINNHGGA 382 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-----~------~~vv~i~GDGsf--~~~~~eL~Ta~~~~~~lp---v~iiV~NN~g~g 382 (983)
+.+.+|. ..|.+.|++.|. + .-+|++.|||+| +=.+.|-..++. -+++| +++||.| |+|+
T Consensus 312 npShlea--v~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~-l~~lp~ggvIfvveN-Nq~g 387 (924)
T PRK09404 312 NPSHLEI--VNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQ-LRGYRTGGTIHIVIN-NQIG 387 (924)
T ss_pred Ccccccc--ccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHH-hcCCCCCCEEEEEEe-CCEE
Confidence 3456777 899999999986 3 356889999998 334455444443 25776 6555555 5676
Q ss_pred cccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 383 IFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
+--.. .. .....+..++|++||+++++|+ +++.+..+.+.|+ +.+||+|||+.+.+
T Consensus 388 ~tT~~-----------~~---~~s~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR 449 (924)
T PRK09404 388 FTTSP-----------PD---DRSTPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYR 449 (924)
T ss_pred EeeCH-----------HH---hccchhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEec
Confidence 65211 00 0123457889999999999988 6777766666654 45899999999987
|
|
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.8e-05 Score=83.92 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=39.1
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHh-hCCCEEEEEcCCCCCCCCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAV-SGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l-~~~~~vi~~Dl~G~G~S~~~ 981 (983)
++|...|.+. +++|||+||+++++..| .+...+ .++|+||++|+||||+|+.+
T Consensus 17 l~y~~~g~~~---~~~lvllHG~~~~~~~~-~~~~~~~~~~~~vi~~D~~G~G~S~~~ 70 (306)
T TIGR01249 17 LYYEQSGNPD---GKPVVFLHGGPGSGTDP-GCRRFFDPETYRIVLFDQRGCGKSTPH 70 (306)
T ss_pred EEEEECcCCC---CCEEEEECCCCCCCCCH-HHHhccCccCCEEEEECCCCCCCCCCC
Confidence 3445556533 68999999998887655 344444 35799999999999999854
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=97.62 E-value=9.2e-05 Score=83.25 Aligned_cols=43 Identities=21% Similarity=0.452 Sum_probs=35.5
Q ss_pred CceEEEeCCCCCChh-hHHHHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGE-EWIPIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~-~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
++.|||+|||+.+.. .|..+...|.+ +|+|+++|+||||.|+.
T Consensus 59 ~~~VvllHG~~~~~~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~~ 103 (330)
T PLN02298 59 RALIFMVHGYGNDISWTFQSTAIFLAQMGFACFALDLEGHGRSEG 103 (330)
T ss_pred ceEEEEEcCCCCCcceehhHHHHHHHhCCCEEEEecCCCCCCCCC
Confidence 567999999987653 56777777875 59999999999999974
|
|
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.60 E-value=6.9e-05 Score=84.64 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=35.2
Q ss_pred CceEEEeCCCCCChhhHHHHH---HHhh-CCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIM---KAVS-GSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~---~~l~-~~~~vi~~Dl~G~G~S~~~ 981 (983)
.|+|||+||+++++..|..++ +.|. ++|+||++|+||||.|+.+
T Consensus 41 ~~~vll~~~~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~ 88 (339)
T PRK07581 41 DNAILYPTWYSGTHQDNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSP 88 (339)
T ss_pred CCEEEEeCCCCCCcccchhhccCCCccCcCceEEEEecCCCCCCCCCC
Confidence 456777788887888887665 4675 5799999999999999865
|
|
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=5.3e-05 Score=85.67 Aligned_cols=52 Identities=21% Similarity=0.382 Sum_probs=39.1
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChh------------hHHHHHH---Hh-hCCCEEEEEcCCCCCCCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGE------------EWIPIMK---AV-SGSARCISIDLPGHGGSKM 980 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~------------~w~~~~~---~l-~~~~~vi~~Dl~G~G~S~~ 980 (983)
++|...|+. ++|+|||||+++++. .|..+++ .| +++|+||++|+||||.|..
T Consensus 48 l~y~~~G~~----~~p~vll~g~~~~~~~~~~~~~~~~~~~w~~~v~~~~~L~~~~~~Vi~~Dl~G~g~s~~ 115 (343)
T PRK08775 48 LRYELIGPA----GAPVVFVAGGISAHRHVAATATFPEKGWWEGLVGSGRALDPARFRLLAFDFIGADGSLD 115 (343)
T ss_pred EEEEEeccC----CCCEEEEecCCCcccccccccCCCCCCcchhccCCCCccCccccEEEEEeCCCCCCCCC
Confidence 334555642 457888887777766 7999996 57 5789999999999998853
|
|
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00016 Score=82.79 Aligned_cols=44 Identities=25% Similarity=0.477 Sum_probs=40.0
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
+++|||+||++++...|..+.+.|.+ .|+|+++|+||||+|+..
T Consensus 136 ~~~Vl~lHG~~~~~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~ 180 (395)
T PLN02652 136 RGILIIIHGLNEHSGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGL 180 (395)
T ss_pred ceEEEEECCchHHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC
Confidence 57899999999999999999999965 699999999999999864
|
|
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=9.7e-05 Score=84.65 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=39.1
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChhh-------------HHHHH----HHhhCCCEEEEEcCCCC-CCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGEE-------------WIPIM----KAVSGSARCISIDLPGH-GGSK 979 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~~-------------w~~~~----~~l~~~~~vi~~Dl~G~-G~S~ 979 (983)
++|...|..+...+|+|||+||+++++.. |..++ ..++++|+||++|+||+ |.|+
T Consensus 35 ~~y~~~G~~~~~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~ 107 (379)
T PRK00175 35 LAYETYGTLNADRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGST 107 (379)
T ss_pred EEEEeccccCCCCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCC
Confidence 34455554211126899999999999984 77876 34478899999999993 5454
|
|
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00016 Score=78.66 Aligned_cols=44 Identities=25% Similarity=0.222 Sum_probs=35.8
Q ss_pred CceEEEeCCCCCChh-hHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGE-EWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~-~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
+++|||+||+++++. .|..+...|.+ +|+|+++|+||||.|+.+
T Consensus 25 ~~~vl~~hG~~g~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~ 70 (288)
T TIGR01250 25 KIKLLLLHGGPGMSHEYLENLRELLKEEGREVIMYDQLGCGYSDQP 70 (288)
T ss_pred CCeEEEEcCCCCccHHHHHHHHHHHHhcCCEEEEEcCCCCCCCCCC
Confidence 689999999876654 55666677765 699999999999999865
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00044 Score=86.97 Aligned_cols=112 Identities=18% Similarity=0.078 Sum_probs=83.0
Q ss_pred CCCCccchHHHHHhhhhcc-CceEEEEEccchhhhc-cchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 321 GASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHD-TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 321 G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
-.||- ....++|.+-.. +++||+.+|||.|+|+ +..|-.++. .+.+++++|+.|..=+|--..+
T Consensus 481 ~~MG~--eg~~~~G~a~f~~~~hv~a~iGDgTffHSG~~al~~AV~--~~~nit~~IL~N~~vAMTGgQ~---------- 546 (1165)
T PRK09193 481 TQMGG--EGVPWIGQAPFTDEKHVFQNLGDGTYFHSGLLAIRAAVA--AGVNITYKILYNDAVAMTGGQP---------- 546 (1165)
T ss_pred eccCC--cchhhceeccccCCCcEEEEeccccchhcCHHHHHHHHh--cCCCeEEEEEeCCcccccCCCC----------
Confidence 45666 678888887776 7899999999999996 788888887 7999999999999887763211
Q ss_pred ccccccCCCCCHHHHHHHcCCceeeeC--CHHHH-----------------HHHHHhhh-ccCCCEEEEE
Q 041113 399 DQYFYTTHNISIQNLCLAHGLNHVQVK--TKVEL-----------------EEALSMSQ-HLGTDRVIEV 448 (983)
Q Consensus 399 ~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL-----------------~~aL~~a~-~~~~p~lIeV 448 (983)
.-++...++..+++++.|++.+.|- ++.++ .+++++.+ +.+|++||=.
T Consensus 547 --~~g~~~~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~ 614 (1165)
T PRK09193 547 --VDGGLSVPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIY 614 (1165)
T ss_pred --CCCCcchhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 1112246789999999999887665 44444 34455555 5678776643
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00024 Score=76.36 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=36.5
Q ss_pred CceEEEeCCCCCC----hhhHHHHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGT----GEEWIPIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~----~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
.++|||+|||+.+ ...|..+.+.|++ +|+|+++|+||||.|+.
T Consensus 25 ~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g 72 (266)
T TIGR03101 25 RGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAG 72 (266)
T ss_pred ceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
Confidence 4689999999864 4578888999975 59999999999999964
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00059 Score=83.49 Aligned_cols=118 Identities=19% Similarity=0.110 Sum_probs=88.1
Q ss_pred ecCCCCCccchHHHHHhhhhcc------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCCcc
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGGAI 383 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~ 383 (983)
..-|+||. |++.|+|.|++. +++|+||+|||.++= +...+..|.+ ++|+=+|+|+|+|...+
T Consensus 186 ~sTGSLGq--Gl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~--~kLdNLi~IvD~N~~ql 261 (889)
T TIGR03186 186 FPTGSMGI--GPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAAR--ERLDNLVFVINCNLQRL 261 (889)
T ss_pred cCCCCchH--HHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHH--hCCCCEEEEEeCCCCcc
Confidence 45599999 999999999851 478999999999975 4566777777 89977788888887543
Q ss_pred ccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--------------------------------------
Q 041113 384 FSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK-------------------------------------- 425 (983)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~-------------------------------------- 425 (983)
--. ... . ....-++.+.-++||.+..+|.
T Consensus 262 DG~----------t~~-~--~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga 328 (889)
T TIGR03186 262 DGP----------VRG-N--GRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGA 328 (889)
T ss_pred CCc----------ccc-c--cccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchH
Confidence 211 000 0 0012368888899999988882
Q ss_pred ---------------------------------CHHHHHHHHHhhhcc-CCCEEEEEEcCc
Q 041113 426 ---------------------------------TKVELEEALSMSQHL-GTDRVIEVESCI 452 (983)
Q Consensus 426 ---------------------------------~~~eL~~aL~~a~~~-~~p~lIeV~~~~ 452 (983)
+++++.+|+++|.+. ++|+||.+.|-+
T Consensus 329 ~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~~~~PTvIla~Tvk 389 (889)
T TIGR03186 329 YNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRHEGRPTVILAKTMK 389 (889)
T ss_pred HHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeee
Confidence 788899999888754 699999999876
|
Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component. |
| >PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00064 Score=64.28 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=69.0
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-----------------cCcccHHH
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-----------------IHKENLLD 556 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-----------------~~~~~~~~ 556 (983)
||++|..+.+= .+.| ++++-|+|.+++|..|.+-+.... |.+..+..
T Consensus 1 ~I~~v~~r~Il--------DsrG--------~PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~ 64 (132)
T PF03952_consen 1 TITKVKAREIL--------DSRG--------NPTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSK 64 (132)
T ss_dssp BEEEEEEEEEE---------TTS---------EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHH
T ss_pred CeEEEEEEEEE--------cCCC--------CceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccch
Confidence 58888877762 2222 789999999999988888543211 11122333
Q ss_pred HHHHH-HHHHhHhccCcccc---cccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhc
Q 041113 557 AEEQL-RFLLHFMTGAKISY---FLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNIL 627 (983)
Q Consensus 557 ~~~~l-~~~~~~l~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lL 627 (983)
..+.+ ..+.|.|+|.++.+ +..+|...+.+..++ ..-..+..|+.+|++-+.|+..|+|||++|
T Consensus 65 Av~~vn~~i~~~L~g~~~~dQ~~iD~~L~~lDgT~nk~-------~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 65 AVENVNEIIAPALIGLDPTDQEEIDQILIELDGTPNKS-------RLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp HHHHHHHTHHHHHTTSBTT-HHHHHHHHHHHHTSTTST-------TT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred hhhhHHHHHHHHHHhcchhhHHHhCccceeccCChhhh-------cccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 33444 35789999998876 333333222211111 233578899999999999999999999875
|
In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A .... |
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00016 Score=82.05 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=39.0
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChh-----------hHHHHH----HHhhCCCEEEEEcCCC--CCCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGE-----------EWIPIM----KAVSGSARCISIDLPG--HGGSK 979 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~-----------~w~~~~----~~l~~~~~vi~~Dl~G--~G~S~ 979 (983)
++|...|..+...+++|||+||++++++ .|+.++ ..++++|+||++|+|| ||.|.
T Consensus 18 ~~y~~~g~~~~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~ 89 (351)
T TIGR01392 18 VAYETYGTLNAERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTG 89 (351)
T ss_pred EEEEeccccCCCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCC
Confidence 3445555311011579999999999874 488887 4447789999999999 56554
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >PRK05261 putative phosphoketolase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00075 Score=81.55 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=79.2
Q ss_pred ecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhcc-chHHHHHh--hccCCCEEEEEEeCCCCccccCCCCCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDT-NGLAILKQ--RMKRKPILMLVINNHGGAIFSLLPIADRT 393 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~-~eL~Ta~~--~~~~lpv~iiV~NN~g~g~~~~~~~~~~~ 393 (983)
..-|.+|+ |++.|+|++++. +..|+|++|||.+.=.. ...|-+.+ ..+++.-++.|+++|+|.|-...
T Consensus 139 ~~~G~LG~--gls~A~G~Al~~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng~~Is~pt------ 210 (785)
T PRK05261 139 HEGGELGY--SLSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKIANPT------ 210 (785)
T ss_pred eCCCchhh--HHHHHHHHHHcCCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecCCcCCCCc------
Confidence 34589999 999999999998 88999999999954321 11122111 01345555667777888775321
Q ss_pred CccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHH--------HH-------hhhcc---CCCE--EEEEEcC
Q 041113 394 EPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEA--------LS-------MSQHL---GTDR--VIEVESC 451 (983)
Q Consensus 394 ~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~a--------L~-------~a~~~---~~p~--lIeV~~~ 451 (983)
.. .....-++.+..++||.+.+.|+ +++++.++ ++ +|... .+|. +|.+.+.
T Consensus 211 ---~~----~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~ 283 (785)
T PRK05261 211 ---IL----ARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTP 283 (785)
T ss_pred ---cc----cccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECC
Confidence 00 01123478999999999999987 55565555 22 22222 4888 9999988
Q ss_pred c
Q 041113 452 I 452 (983)
Q Consensus 452 ~ 452 (983)
+
T Consensus 284 k 284 (785)
T PRK05261 284 K 284 (785)
T ss_pred c
Confidence 7
|
|
| >KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00097 Score=76.05 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=87.5
Q ss_pred eecCCCCCccchHHHHHhhhhcc------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCCccccCCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLP 388 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~ 388 (983)
..+-|.+|. |+++|+|.|++. +.+|+|++|||+.+= .......|.. |+++-+|++++|+..++--.-
T Consensus 114 ~v~TG~lgQ--gis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~--l~ldnLVai~D~n~is~~g~t- 188 (632)
T KOG0523|consen 114 EVATGPLGQ--GISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGH--LKLDNLVAIYDNNKISIDGAT- 188 (632)
T ss_pred eeccCCccc--hHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhh--cccCCEEEEEccccccCCCCC-
Confidence 344589999 999999999975 469999999999874 3344555555 899988999988866543110
Q ss_pred CCCCCCccccccccccCCCCCHHH-HHHHcCCceeeeC--CHHHHHHHHHhhhc-cCCCEEEEEEcCcc
Q 041113 389 IADRTEPRILDQYFYTTHNISIQN-LCLAHGLNHVQVK--TKVELEEALSMSQH-LGTDRVIEVESCID 453 (983)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~df~~-la~a~G~~~~~v~--~~~eL~~aL~~a~~-~~~p~lIeV~~~~~ 453 (983)
...+..|..+ =.++||++...|+ +.++|.+++..+.. .++|..|-+.+-..
T Consensus 189 --------------~~~~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~~k~kpt~i~~~t~~g 243 (632)
T KOG0523|consen 189 --------------SLGFDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKSVKGKPTAIKATTFIG 243 (632)
T ss_pred --------------cccccccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhhccCCceeeeeeeeee
Confidence 0124566666 6799999999887 67888888888763 57899988887653
|
|
| >PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00083 Score=84.86 Aligned_cols=109 Identities=18% Similarity=0.113 Sum_probs=80.3
Q ss_pred CCCCccchHHHHHhhhhcc-CceEEEEEccchhhhc-cchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 321 GASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHD-TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 321 G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
-.||- ....++|.+-+. +++||+++|||.|+|+ +..|-.++. .+.|++++|++|..=.|--..
T Consensus 468 ~~MG~--~g~~~~G~a~~~~~~~v~a~iGDgTf~HSG~~al~~AV~--~~~nit~~IL~N~~tAMTGgQ----------- 532 (1159)
T PRK13030 468 TQMGG--EGVDWIGHAPFTETKHVFQNLGDGTYFHSGSLAIRQAVA--AGANITYKILYNDAVAMTGGQ----------- 532 (1159)
T ss_pred eccCc--cchhhceeccccCCCCEEEEeccchhhhcCHHHHHHHHh--cCCCeEEEEEeCCcccccCCC-----------
Confidence 45776 778899988877 7899999999999996 788888887 799999999999987775221
Q ss_pred ccccccCCCCCHHH---HHHHcCCceeeeC--CHHH----------------HHHHHHhhh-ccCCCEEEEE
Q 041113 399 DQYFYTTHNISIQN---LCLAHGLNHVQVK--TKVE----------------LEEALSMSQ-HLGTDRVIEV 448 (983)
Q Consensus 399 ~~~~~~~~~~df~~---la~a~G~~~~~v~--~~~e----------------L~~aL~~a~-~~~~p~lIeV 448 (983)
.. +..++..+ ++++.|++.+.|- ++.+ ..+++++.+ +.+|++||=.
T Consensus 533 -p~---~g~i~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~~~~GvsViI~ 600 (1159)
T PRK13030 533 -PV---DGSISVPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELRETPGVTVLIY 600 (1159)
T ss_pred -CC---CCCCCHHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 00 12467777 6679999887764 3333 334556665 6678777643
|
|
| >KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00021 Score=76.56 Aligned_cols=45 Identities=29% Similarity=0.462 Sum_probs=40.1
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC----------CEEEEEcCCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS----------ARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~----------~~vi~~Dl~G~G~S~~~~ 982 (983)
--||+++|||++|-..|-.+++.|.+. |.||+|-+||||.|+.+.
T Consensus 152 v~PlLl~HGwPGsv~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPGygwSd~~s 206 (469)
T KOG2565|consen 152 VKPLLLLHGWPGSVREFYKFIPLLTDPKRHGNESDYAFEVIAPSLPGYGWSDAPS 206 (469)
T ss_pred ccceEEecCCCchHHHHHhhhhhhcCccccCCccceeEEEeccCCCCcccCcCCc
Confidence 358999999999999999999988642 899999999999999875
|
|
| >KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00077 Score=70.18 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=73.1
Q ss_pred cceeEeecCCCCCccchHHHHHhhhhcc------CceEEEEEccchhhhc--cchHHHHHhhccCCCEEEEEEeCCCCcc
Q 041113 312 QWIRVAGNRGASGIDGLLSTAIGFAVGC------NKHVLCVVGDISFLHD--TNGLAILKQRMKRKPILMLVINNHGGAI 383 (983)
Q Consensus 312 ~~~~~~~~~G~mG~~g~lpaaiGaalA~------~~~vv~i~GDGsf~~~--~~eL~Ta~~~~~~lpv~iiV~NN~g~g~ 383 (983)
+++++++ .+-. .+|-|+|++.|. ++-+||..|||+.--. -..|--++- ...|+ |++..|+||.|
T Consensus 187 nf~tiss---plat--qlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAt--le~Pv-if~CRNNG~AI 258 (432)
T KOG1182|consen 187 NFVTISS---PLAT--QLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAAT--LECPV-IFFCRNNGWAI 258 (432)
T ss_pred ceEEecc---hhhh--ccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHH--hCCCE-EEEEcCCCeee
Confidence 3444443 3444 899999998874 4789999999985311 012222332 57897 45556667877
Q ss_pred ccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeCCHHHH--HHHHHh----hhccCCCEEEEEEcCc
Q 041113 384 FSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVEL--EEALSM----SQHLGTDRVIEVESCI 452 (983)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL--~~aL~~----a~~~~~p~lIeV~~~~ 452 (983)
-... .+.+-++. .+.-..+||+.+++|+--+-| -.|.++ ++..++|+|||..+-+
T Consensus 259 STpt----------seQyr~DG----Ia~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYR 319 (432)
T KOG1182|consen 259 STPT----------SEQYRGDG----IAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYR 319 (432)
T ss_pred cccc----------HHHhcCCc----eEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhh
Confidence 5321 12221211 222345899999999965554 334444 4567899999998876
|
|
| >COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0017 Score=61.12 Aligned_cols=89 Identities=19% Similarity=0.214 Sum_probs=56.6
Q ss_pred HHHHHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCcccc
Q 041113 78 EVLELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVK 156 (983)
Q Consensus 78 ~~~~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~ 156 (983)
-++.++++||||++|+|..+. .+..+.+.+|+|+.++|+++|..+ .+.--=+|+=.+.|- +..++.+..++...
T Consensus 27 v~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~-~~~~~~~~i~~~~~~----lh~it~~l~Dp~w~ 101 (170)
T COG1880 27 VVAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASS-MGNLIGRGIGSEYIN----LHAITQYLTDPNWP 101 (170)
T ss_pred HHHHHHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEecchh-hcchhhcccccchhH----HHHHHHHhcCCCCC
Confidence 456789999999999999776 445678899999999999999853 100000122222211 12233333333222
Q ss_pred cc---CCCCEEEEeCCcc
Q 041113 157 DW---IQFDVIIQIGSRI 171 (983)
Q Consensus 157 ~~---~~aDlvl~iG~~~ 171 (983)
-+ -+.|+||.+|+..
T Consensus 102 G~dg~g~yDlviflG~~~ 119 (170)
T COG1880 102 GFDGNGNYDLVIFLGSIY 119 (170)
T ss_pred CcCCCCCcceEEEEeccH
Confidence 22 3689999999985
|
|
| >PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0022 Score=79.07 Aligned_cols=117 Identities=19% Similarity=0.110 Sum_probs=87.7
Q ss_pred ecCCCCCccchHHHHHhhhhcc------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCCcc
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGGAI 383 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~ 383 (983)
..-|+||. |++.|||.|++. +++|+|++|||.++= +...+..+.+ ++|.=+|+|+|+|...+
T Consensus 200 ~~TGSlG~--G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~--~~LdNLi~ivD~N~~~l 275 (896)
T PRK13012 200 FPTGSMGI--GPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAR--EGLDNLVFVINCNLQRL 275 (896)
T ss_pred cCCCCchH--HHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHH--hCCCcEEEEEECCCccc
Confidence 34589999 999999998862 478999999999974 5666777777 89977788888876533
Q ss_pred ccCCCCCCCCCccccccccccCC-CCCHHHHHHHcCCceeee--------------------------C-----------
Q 041113 384 FSLLPIADRTEPRILDQYFYTTH-NISIQNLCLAHGLNHVQV--------------------------K----------- 425 (983)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~-~~df~~la~a~G~~~~~v--------------------------~----------- 425 (983)
--. .. .... --++...-+++|.+..+| +
T Consensus 276 DG~----------v~----~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g 341 (896)
T PRK13012 276 DGP----------VR----GNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDG 341 (896)
T ss_pred cCc----------cc----cccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcch
Confidence 210 00 0001 126888889999999888 4
Q ss_pred ----------------------------------CHHHHHHHHHhhhc-cCCCEEEEEEcCc
Q 041113 426 ----------------------------------TKVELEEALSMSQH-LGTDRVIEVESCI 452 (983)
Q Consensus 426 ----------------------------------~~~eL~~aL~~a~~-~~~p~lIeV~~~~ 452 (983)
+.+++.+|++++.+ .++|+||-+.|-+
T Consensus 342 ~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~~~~PtvIla~Tvk 403 (896)
T PRK13012 342 AYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRHKGQPTVILAKTKK 403 (896)
T ss_pred HHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeee
Confidence 78899999988774 4689999999876
|
|
| >TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0029 Score=76.70 Aligned_cols=117 Identities=17% Similarity=0.099 Sum_probs=86.4
Q ss_pred ecCCCCCccchHHHHHhhhhcc------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCCcc
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGGAI 383 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~ 383 (983)
..-|+||. |++.|+|.|++. +++|+||+|||-++= +...+..|.+ ++|+=+|+|+|+|...+
T Consensus 186 ~sTGSLG~--Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~--~kLdNLi~IVD~N~~ql 261 (885)
T TIGR00759 186 FPTVSMGL--GPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAR--EKLDNLTFVINCNLQRL 261 (885)
T ss_pred eCCCCccH--HHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHH--hCCCCEEEEEeCCCCcc
Confidence 45589999 999999998852 478999999999974 4566777777 89977788888877543
Q ss_pred ccCCCCCCCCCccccccccccCC-CCCHHHHHHHcCCceeeeC-------------------------------------
Q 041113 384 FSLLPIADRTEPRILDQYFYTTH-NISIQNLCLAHGLNHVQVK------------------------------------- 425 (983)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~-~~df~~la~a~G~~~~~v~------------------------------------- 425 (983)
--.- . +... .-++...-+++|.+..+|.
T Consensus 262 DG~v----------~----~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~G 327 (885)
T TIGR00759 262 DGPV----------R----GNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDG 327 (885)
T ss_pred CCcc----------c----cccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcch
Confidence 2110 0 0000 1257788888888888872
Q ss_pred ----------------------------------CHHHHHHHHHhhhcc-CCCEEEEEEcCc
Q 041113 426 ----------------------------------TKVELEEALSMSQHL-GTDRVIEVESCI 452 (983)
Q Consensus 426 ----------------------------------~~~eL~~aL~~a~~~-~~p~lIeV~~~~ 452 (983)
+.++|.+|++++.+. ++|+||-+.|-+
T Consensus 328 a~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~~grPTvIlA~TvK 389 (885)
T TIGR00759 328 AYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEHKGQPTVILAKTIK 389 (885)
T ss_pred HHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhCCCCCEEEEEeeee
Confidence 788889999887754 589999999876
|
WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. |
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00055 Score=83.09 Aligned_cols=43 Identities=23% Similarity=0.465 Sum_probs=39.2
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhh-CCCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVS-GSARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~-~~~~vi~~Dl~G~G~S~~ 980 (983)
.|+|||+||++++...|..+.+.|. ..|+||++|+||||+|..
T Consensus 449 ~P~VVllHG~~g~~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~ 492 (792)
T TIGR03502 449 WPVVIYQHGITGAKENALAFAGTLAAAGVATIAIDHPLHGARSF 492 (792)
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEeCCCCCCcccc
Confidence 3689999999999999999999997 469999999999999943
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0011 Score=72.90 Aligned_cols=41 Identities=20% Similarity=0.450 Sum_probs=38.1
Q ss_pred ceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCC
Q 041113 939 NILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSK 979 (983)
Q Consensus 939 ~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~ 979 (983)
..||++||++.++.-|..++..|.. .|.|+++|+||||+|.
T Consensus 35 g~Vvl~HG~~Eh~~ry~~la~~l~~~G~~V~~~D~RGhG~S~ 76 (298)
T COG2267 35 GVVVLVHGLGEHSGRYEELADDLAARGFDVYALDLRGHGRSP 76 (298)
T ss_pred cEEEEecCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCC
Confidence 5899999999999999999998865 5999999999999996
|
|
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0019 Score=70.52 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=35.1
Q ss_pred CceEEEeCCCCC----ChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLG----TGEEWIPIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~----~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
++++|++||++. +...|..+.+.|++ .|+|+++|+||||.|..
T Consensus 26 ~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~ 73 (274)
T TIGR03100 26 TTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEG 73 (274)
T ss_pred CCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCC
Confidence 578999998763 44567778888876 59999999999999864
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0011 Score=76.24 Aligned_cols=43 Identities=21% Similarity=0.392 Sum_probs=34.5
Q ss_pred CceEEEeCCCCCChhh-H-HHHHH-HhhCCCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEE-W-IPIMK-AVSGSARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~-w-~~~~~-~l~~~~~vi~~Dl~G~G~S~~ 980 (983)
+|+|||+||+++++.. | ..++. .+.++|+|+++|+||||.|..
T Consensus 100 ~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~ 145 (388)
T PLN02511 100 APVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPV 145 (388)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCC
Confidence 6899999999877643 5 44554 456779999999999999974
|
|
| >PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0033 Score=79.16 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=79.3
Q ss_pred CCCCccchHHHHHhhhhcc-CceEEEEEccchhhhc-cchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 321 GASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHD-TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 321 G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
-.||- ....++|.+-.. +++||+.+|||.|+|+ +..|-.++. .+.+++++|+.|..=.|--..+
T Consensus 495 ~~MGg--eg~~~~G~a~f~~~~hv~aniGDgTffHSG~~alr~AV~--~~~nit~kIL~N~avAMTGgQp---------- 560 (1186)
T PRK13029 495 SQMGG--EGVAWIGQMPFSRRRHVFQNLGDGTYFHSGLLAIRQAIA--AGVNITYKILYNDAVAMTGGQP---------- 560 (1186)
T ss_pred eccCc--chhhheeecccCCCCCEEEEeccccchhcCHHHHHHHHh--cCCCEEEEEEeCcchhccCCCC----------
Confidence 45776 778889988777 7899999999999996 778888887 7899999999999877752211
Q ss_pred ccccccCCCCCHHH---HHHHcCCceeeeCC--HHHH-----------------HHHHHhhh-ccCCCEEEEE
Q 041113 399 DQYFYTTHNISIQN---LCLAHGLNHVQVKT--KVEL-----------------EEALSMSQ-HLGTDRVIEV 448 (983)
Q Consensus 399 ~~~~~~~~~~df~~---la~a~G~~~~~v~~--~~eL-----------------~~aL~~a~-~~~~p~lIeV 448 (983)
.+..++..+ ++++.|++.+.|-+ +.++ .+++++.+ +.+|++||=.
T Consensus 561 -----~~G~~~v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~ 628 (1186)
T PRK13029 561 -----VDGVLTVPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIY 628 (1186)
T ss_pred -----CCCcCCHHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 012466777 66999998877644 4222 34455555 5678776643
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0023 Score=68.60 Aligned_cols=42 Identities=26% Similarity=0.333 Sum_probs=38.1
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~ 979 (983)
.|.|||+||++++...|..+...|.+ .|+|+++|+||||.|.
T Consensus 27 ~p~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~ 69 (249)
T PRK10566 27 LPTVFFYHGFTSSKLVYSYFAVALAQAGFRVIMPDAPMHGARF 69 (249)
T ss_pred CCEEEEeCCCCcccchHHHHHHHHHhCCCEEEEecCCcccccC
Confidence 68999999999999999999999976 4999999999999763
|
|
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.00098 Score=67.10 Aligned_cols=42 Identities=26% Similarity=0.443 Sum_probs=38.4
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~ 979 (983)
+..|+|||||.++.+..+.+.+.|.++ |+|++|-+||||-..
T Consensus 15 ~~AVLllHGFTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~ 57 (243)
T COG1647 15 NRAVLLLHGFTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLP 57 (243)
T ss_pred CEEEEEEeccCCCcHHHHHHHHHHHHCCceEecCCCCCCCCCH
Confidence 458999999999999999999999765 999999999999764
|
|
| >PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0063 Score=74.81 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=86.5
Q ss_pred cCCCCCccchHHHHHhhhhcc------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGGAIF 384 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~ 384 (983)
.-|+||. |++.|+|.+++. +++|+|++|||.++= +...+..+.+ ++|.=+|+|+|.|...+-
T Consensus 193 ~tgS~G~--G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~--~~LdNLi~ivD~N~q~lD 268 (891)
T PRK09405 193 PTVSMGL--GPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAR--EKLDNLIFVINCNLQRLD 268 (891)
T ss_pred Cccccch--hHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHH--hCCCCEEEEEECCCcccC
Confidence 3489999 999999988853 478999999999975 5666777777 899777888887764332
Q ss_pred cCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeee--------------------------C-------------
Q 041113 385 SLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQV--------------------------K------------- 425 (983)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v--------------------------~------------- 425 (983)
.. .... . ...-++.+.-++||.+..+| +
T Consensus 269 G~----------v~~~--~-~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~ 335 (891)
T PRK09405 269 GP----------VRGN--G-KIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAY 335 (891)
T ss_pred Cc----------cccc--c-ccchhHHHHHhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHH
Confidence 10 0000 0 00136888888999988888 2
Q ss_pred --------------------------------CHHHHHHHHHhhhcc-CCCEEEEEEcCc
Q 041113 426 --------------------------------TKVELEEALSMSQHL-GTDRVIEVESCI 452 (983)
Q Consensus 426 --------------------------------~~~eL~~aL~~a~~~-~~p~lIeV~~~~ 452 (983)
+.++|.+|++++.+. ++|+||-+.|-+
T Consensus 336 ~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~~~~PtvIia~Tvk 395 (891)
T PRK09405 336 VREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEHKGQPTVILAKTIK 395 (891)
T ss_pred HHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhCCCCCEEEEEecee
Confidence 788999999888764 789999999765
|
|
| >TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0094 Score=76.90 Aligned_cols=111 Identities=16% Similarity=0.060 Sum_probs=80.8
Q ss_pred ceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCC-CCCCCc-cccccccccCCCCCHHHHHHHc
Q 041113 341 KHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPI-ADRTEP-RILDQYFYTTHNISIQNLCLAH 417 (983)
Q Consensus 341 ~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~-~~~~~~-~~~~~~~~~~~~~df~~la~a~ 417 (983)
+.|+++.||| ++-..++.|.-+.+ -|.++++||+||..|+.-....- ...... ..+...-.....-|...+|.++
T Consensus 952 ~sv~~~~GDG~~~diG~~~l~~~~~--r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGYGGLDHVLA--SGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCccchHHHHH--cCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 5799999999 56788899999988 69999999999999987632100 000000 0000000112457899999999
Q ss_pred CCcee-eeC---CHHHHHHHHHhhhccCCCEEEEEEcCcc
Q 041113 418 GLNHV-QVK---TKVELEEALSMSQHLGTDRVIEVESCID 453 (983)
Q Consensus 418 G~~~~-~v~---~~~eL~~aL~~a~~~~~p~lIeV~~~~~ 453 (983)
|..|+ ++. ++.++.+++++|.+.+||.+|++....-
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~~~G~s~i~~~~pC~ 1069 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEAYDGPSIVIAYSPCI 1069 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHcCCCCEEEEEECCCc
Confidence 98765 443 6899999999999999999999998764
|
This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase. |
| >PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4 | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.013 Score=55.30 Aligned_cols=109 Identities=23% Similarity=0.391 Sum_probs=61.7
Q ss_pred CCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCc----ccHH---HHHHHH-HHHHhHhccCccccccccc
Q 041113 509 APPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHK----ENLL---DAEEQL-RFLLHFMTGAKISYFLPLL 580 (983)
Q Consensus 509 ~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~----~~~~---~~~~~l-~~~~~~l~g~~~~~~~~~~ 580 (983)
.|.+.++.+. +..-+.+.|.+..+||.+.||.|....|++ +.+. +....+ ..+.|.|+|+++..+..+-
T Consensus 37 ~P~TpGF~sV---Rq~gesisV~l~L~dG~va~GDCaaVQYSGagGRDPLF~a~~~ip~ie~~v~p~L~g~d~~~Fr~~a 113 (159)
T PF05034_consen 37 EPVTPGFKSV---RQAGESISVMLVLEDGQVAYGDCAAVQYSGAGGRDPLFLAEDFIPVIEKEVAPRLVGRDLSSFRENA 113 (159)
T ss_dssp ---STT-SSS---EEEEEEEEEEEEETTS-EEEEEE---TTTTSTTS-S---HHHHHHHHHHHTHHHHTT-B-S-CHHHH
T ss_pred CCCCCCchhh---hccCcEEEEEEEeCCCCEEEeeehheeecccCCCCCcccHHHHHHHHHhhccHHHcCCcHHHHHHHH
Confidence 3555555543 234778999999999999999997654321 1111 111222 4688999999988765433
Q ss_pred ccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhc
Q 041113 581 KGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNIL 627 (983)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lL 627 (983)
.. + ..+ +.+..++.+.+.+|..||+|+.||..+.-..+.+
T Consensus 114 ~~-----~-d~~-~~g~rlhtAiRYGvsQALL~A~A~a~~~tmaeVi 153 (159)
T PF05034_consen 114 EK-----F-DEL-VDGKRLHTAIRYGVSQALLDAAAKAQRTTMAEVI 153 (159)
T ss_dssp HH-----H-HH--ETTEE--HHHHHHHHHHHHHHHHHHCTS-HHHHH
T ss_pred HH-----H-Hhc-ccCCcchhHHHHhHHHHHHHHHHHHcCCcHHHHH
Confidence 21 1 111 2334567889999999999999999887666554
|
3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A. |
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0034 Score=71.87 Aligned_cols=45 Identities=27% Similarity=0.573 Sum_probs=35.6
Q ss_pred CCceEEEeCCCCCCh--hhHHH-HHHHhh---CCCEEEEEcCCCCCCCCCC
Q 041113 937 QDNILLFLHGFLGTG--EEWIP-IMKAVS---GSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 937 ~~~~lv~lHG~~~~~--~~w~~-~~~~l~---~~~~vi~~Dl~G~G~S~~~ 981 (983)
++|++|+||||+.+. ..|.+ +.+.|. .+|+||++|++|||.|..+
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y~ 90 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQHYP 90 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCCCc
Confidence 378999999999764 56886 555553 3699999999999988654
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0057 Score=64.86 Aligned_cols=43 Identities=21% Similarity=0.351 Sum_probs=37.2
Q ss_pred CceEEEeCCCCCCh-hhHHHHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTG-EEWIPIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~-~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
+-.|+|+||++... ..+..+...|+. .|-|+++|++|||+|+.
T Consensus 54 r~lv~~~HG~g~~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~SdG 98 (313)
T KOG1455|consen 54 RGLVFLCHGYGEHSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDG 98 (313)
T ss_pred ceEEEEEcCCcccchhhHHHHHHHHHhCCCeEEEeeccCCCcCCC
Confidence 45799999999876 678888888876 59999999999999985
|
|
| >KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0042 Score=66.92 Aligned_cols=44 Identities=30% Similarity=0.557 Sum_probs=41.0
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC--CEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS--ARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~--~~vi~~Dl~G~G~S~~~ 981 (983)
.||++++||+.+|...|+.+...|+.. .+++++|+|-||.|.+-
T Consensus 52 ~Pp~i~lHGl~GS~~Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~ 97 (315)
T KOG2382|consen 52 APPAIILHGLLGSKENWRSVAKNLSRKLGRDVYAVDVRNHGSSPKI 97 (315)
T ss_pred CCceEEecccccCCCCHHHHHHHhcccccCceEEEecccCCCCccc
Confidence 799999999999999999999999875 79999999999999864
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.061 Score=59.42 Aligned_cols=136 Identities=17% Similarity=0.174 Sum_probs=96.1
Q ss_pred EEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC--------------CChHHHHHHHHHHHHHcCCCcEEEEEcCC
Q 041113 645 KICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR--------------ADPIKDAEVIQEVRKKVGHRIELRVDANR 710 (983)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~--------------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~ 710 (983)
|+...+ .+.+++++.+.++.+.+.||..|-|..|.+ .+++.-.+.++++|+++++++.+.|=-.-
T Consensus 64 p~~vQl-~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~ 142 (312)
T PRK10550 64 LVRIQL-LGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRL 142 (312)
T ss_pred cEEEEe-ccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEEC
Confidence 444444 357899999989888889999999998874 12344467788889998766655555555
Q ss_pred CCC-HHHHHHHHhhcccCCCceee-------c----CCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhc-CCC
Q 041113 711 NWT-YQEALEFGFLIKDCDLQYIE-------E----PVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA-HPG 777 (983)
Q Consensus 711 ~~~-~~~a~~~~~~l~~~~i~~iE-------e----P~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~-~~~ 777 (983)
+|+ .+++.++++.+++.|+.+|- | |-.+++..+++++..++||.+.=.+.+..| ...++ ..+
T Consensus 143 g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~d-----a~~~l~~~g 217 (312)
T PRK10550 143 GWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQS-----AQQCMAITG 217 (312)
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHH-----HHHHHhccC
Confidence 674 35688999999988766542 2 111477788999999999999888888754 34433 467
Q ss_pred ceEEEEcCC
Q 041113 778 IVAIVIKPS 786 (983)
Q Consensus 778 ~~~i~~k~~ 786 (983)
+|.+.+=-+
T Consensus 218 ~DgVmiGRg 226 (312)
T PRK10550 218 CDAVMIGRG 226 (312)
T ss_pred CCEEEEcHH
Confidence 888776433
|
|
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0062 Score=68.22 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=34.5
Q ss_pred CceEEEeCCCCCChhh--HHHHHHHhhC-CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEE--WIPIMKAVSG-SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~--w~~~~~~l~~-~~~vi~~Dl~G~G~S~ 979 (983)
+|+||++||+++++.. +..++..|.+ +|+|+++|+||||.|.
T Consensus 58 ~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~ 102 (324)
T PRK10985 58 KPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEP 102 (324)
T ss_pred CCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCc
Confidence 6899999999987543 4567777765 5999999999999775
|
|
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.0072 Score=63.84 Aligned_cols=42 Identities=40% Similarity=0.763 Sum_probs=34.9
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC---CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG---SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~---~~~vi~~Dl~G~G~S~ 979 (983)
+|+++|+||++++...|......+.. .|+|+++|+||||.|.
T Consensus 21 ~~~i~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~g~s~ 65 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRGHGRSD 65 (282)
T ss_pred CCeEEEeCCCCCchhhhHHHHHHhhccccceEEEEecccCCCCCC
Confidence 35899999999999999985443433 2999999999999996
|
|
| >PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.036 Score=55.73 Aligned_cols=106 Identities=18% Similarity=0.097 Sum_probs=80.4
Q ss_pred hHHHHHhhhhccCceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+.+++.+|++-=| ++.-.+..|..+.. .++|+++|.-.-..+..-+. .+ ..
T Consensus 51 A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l~~A~~--~~~Pvl~i~g~~~~~~~~~~----------~~------q~ 112 (172)
T PF02776_consen 51 AAFMADGYARATGRPGVVIVTSGPGATNALTGLANAYA--DRIPVLVITGQRPSAGEGRG----------AF------QQ 112 (172)
T ss_dssp HHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHHHHHHH--TT-EEEEEEEESSGGGTTTT----------ST------TS
T ss_pred hHHHHHHHHHhhccceEEEeecccchHHHHHHHhhccc--ceeeEEEEecccchhhhccc----------cc------cc
Confidence 67788888877778887776554 56777889988877 89999888887776544311 01 12
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh-----ccCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQ-----HLGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~-----~~~~p~lIeV~~~ 451 (983)
..|...+.+.+.....++++++++..++++|+ ..++|+.|++..|
T Consensus 113 ~~d~~~~~~~~~k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~d 162 (172)
T PF02776_consen 113 EIDQQSLFRPVTKWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQD 162 (172)
T ss_dssp STHHHHHHGGGSSEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHH
T ss_pred chhhcchhccccchhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChh
Confidence 45888999999999999999999888888775 3589999999876
|
It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B .... |
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.02 Score=66.19 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=34.3
Q ss_pred CceEEEeCCCCCCh-hhHHHHHHHhhCC-CEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTG-EEWIPIMKAVSGS-ARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~-~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~ 980 (983)
.|.||+.||+.+.. ..|..+.+.|.+. |.|+++|+||||.|..
T Consensus 194 ~P~Vli~gG~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~ 238 (414)
T PRK05077 194 FPTVLVCGGLDSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSK 238 (414)
T ss_pred ccEEEEeCCcccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCCC
Confidence 56667666766654 5798888888765 9999999999999865
|
|
| >cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.047 Score=53.86 Aligned_cols=103 Identities=17% Similarity=0.089 Sum_probs=77.0
Q ss_pred hHHHHHhhhhccCceEEE-EEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLC-VVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~-i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+..+|.|++.+.+++.++ .+..-++.-.++.|..+.. .++|+++|.-+-.....-+. ..+
T Consensus 46 A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~A~~--~~~Pll~i~~~~~~~~~~~~-----------------~~q 106 (155)
T cd07035 46 AVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANAYL--DSIPLLVITGQRPTAGEGRG-----------------AFQ 106 (155)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHHHHh--hCCCEEEEeCCCccccccCC-----------------ccc
Confidence 778888988887555555 5548888888999999988 79999888877665533211 012
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc----c-CCCEEEEEE
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH----L-GTDRVIEVE 449 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~----~-~~p~lIeV~ 449 (983)
..|...+.+.+-....++++.+++.+.+.+++. . ++|+.|++.
T Consensus 107 ~~d~~~~~~~~~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 107 EIDQVALFRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred ccCHHHHHHHHhceEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 357777777777778999999999888888763 2 589999874
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio |
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.014 Score=65.65 Aligned_cols=43 Identities=21% Similarity=0.378 Sum_probs=35.1
Q ss_pred CceEEEeCCCCCChh-hH-------------------------HHHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGE-EW-------------------------IPIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~-~w-------------------------~~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
+-.||++||++.++. .+ ..+++.|.+ +|+|+++|+||||+|+.
T Consensus 21 kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V~~~D~rGHG~S~~ 90 (332)
T TIGR01607 21 IGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSVYGLDLQGHGESDG 90 (332)
T ss_pred eEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcEEEecccccCCCcc
Confidence 458999999999885 21 356888855 69999999999999974
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.021 Score=60.19 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=40.4
Q ss_pred ceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCCCCC
Q 041113 939 NILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 939 ~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~~~ 982 (983)
.+||=+||-++|+..|+.+.+.|.+. .|+|.+.+||||.|+.+.
T Consensus 36 gTVv~~hGsPGSH~DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~ 80 (297)
T PF06342_consen 36 GTVVAFHGSPGSHNDFKYIRPPLDEAGIRFIGINYPGFGFTPGYP 80 (297)
T ss_pred eeEEEecCCCCCccchhhhhhHHHHcCeEEEEeCCCCCCCCCCCc
Confidence 38999999999999999999999764 999999999999998765
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.04 Score=60.04 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=38.1
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCC-CCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGH-GGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~-G~S~~ 980 (983)
.++||+.|||+.+...+..+.+.|.+ .|.|+.+|.+|| |.|+.
T Consensus 37 ~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G 81 (307)
T PRK13604 37 NNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSG 81 (307)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEecCCCCCCCCCC
Confidence 57899999999998778999999976 599999999998 89864
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.042 Score=60.86 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=37.2
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S 978 (983)
.|+|||+||++.+...|..+.++|++. |.|+++|++|++.+
T Consensus 52 ~PvVv~lHG~~~~~~~y~~l~~~Las~G~~VvapD~~g~~~~ 93 (313)
T PLN00021 52 YPVLLFLHGYLLYNSFYSQLLQHIASHGFIVVAPQLYTLAGP 93 (313)
T ss_pred CCEEEEECCCCCCcccHHHHHHHHHhCCCEEEEecCCCcCCC
Confidence 689999999999999999999999875 99999999998643
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.14 Score=57.53 Aligned_cols=106 Identities=20% Similarity=0.230 Sum_probs=71.9
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHHH----HHHHHHHHHHcCCCc--EEEEEc---
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIKD----AEVIQEVRKKVGHRI--ELRVDA--- 708 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~d----~~~v~~vr~~~g~~~--~l~vDa--- 708 (983)
+++++.++.+.+.||..+-|+.+.+ .+++.. ++.|++||+++|+++ .+++-+
T Consensus 141 ~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~ 220 (343)
T cd04734 141 AAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDED 220 (343)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhc
Confidence 4566667777789999999998421 122222 578999999999885 455554
Q ss_pred -CCCCCHHHHHHHHhhcccCC-Cceeec-------C---------CC-----ChHHHHHHHhhcCCcEEeCCCccCc
Q 041113 709 -NRNWTYQEALEFGFLIKDCD-LQYIEE-------P---------VQ-----NEEDIIKYCEESGLPVALDETIDKF 762 (983)
Q Consensus 709 -N~~~~~~~a~~~~~~l~~~~-i~~iEe-------P---------~~-----~~~~~~~l~~~~~ipIa~dEs~~~~ 762 (983)
.++++.++++++++.|++.+ +.|++= + .. +++..+++++..++||...=.+.+.
T Consensus 221 ~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~ 297 (343)
T cd04734 221 TEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDP 297 (343)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCH
Confidence 34588999999999999987 788762 1 00 1233355666667777666555554
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >KOG2984 consensus Predicted hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.019 Score=56.83 Aligned_cols=65 Identities=22% Similarity=0.372 Sum_probs=47.7
Q ss_pred eEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCCh-hhHHHHHHHhhCC--CEEEEEcCCCCCCCCCCC
Q 041113 910 LRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTG-EEWIPIMKAVSGS--ARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~-~~w~~~~~~l~~~--~~vi~~Dl~G~G~S~~~~ 982 (983)
++.++.+++..++| ...|.+ ...|+++.|.-+|. ..|.+++..|.+. +++|++|-||||.|..|.
T Consensus 22 te~kv~vng~ql~y----~~~G~G----~~~iLlipGalGs~~tDf~pql~~l~k~l~~TivawDPpGYG~SrPP~ 89 (277)
T KOG2984|consen 22 TESKVHVNGTQLGY----CKYGHG----PNYILLIPGALGSYKTDFPPQLLSLFKPLQVTIVAWDPPGYGTSRPPE 89 (277)
T ss_pred hhheeeecCceeee----eecCCC----CceeEecccccccccccCCHHHHhcCCCCceEEEEECCCCCCCCCCCc
Confidence 34555666665555 555553 24789999987766 5799988777543 999999999999999875
|
|
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.017 Score=66.01 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=34.1
Q ss_pred CceEEEeCCCCCChhhHH------HHHHHhhC-CCEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWI------PIMKAVSG-SARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~------~~~~~l~~-~~~vi~~Dl~G~G~S 978 (983)
+|+|||+||++.++..|. .+...|++ .|+|+++|+||+|.|
T Consensus 74 ~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~s 121 (395)
T PLN02872 74 GPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRWS 121 (395)
T ss_pred CCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccccccc
Confidence 689999999999999994 34445765 599999999998765
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.16 Score=55.93 Aligned_cols=89 Identities=17% Similarity=0.243 Sum_probs=67.9
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCC---------ChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRA---------DPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~---------~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~ 714 (983)
.|+..++ ...+++++.+.++.+.+.|+..|-+-++.+. +++.-.+.++++|+.+ ++.+.+-.+..++.
T Consensus 99 ~pvi~si-~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~~~~~ 175 (289)
T cd02810 99 QPLIASV-GGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV--DIPLLVKLSPYFDL 175 (289)
T ss_pred CeEEEEe-ccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc--CCCEEEEeCCCCCH
Confidence 3444555 2347888888888888889999999887531 2233356788999887 67788888888999
Q ss_pred HHHHHHHhhcccCCCceeecC
Q 041113 715 QEALEFGFLIKDCDLQYIEEP 735 (983)
Q Consensus 715 ~~a~~~~~~l~~~~i~~iEeP 735 (983)
++..++++.+++.++.+|.=+
T Consensus 176 ~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 176 EDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred HHHHHHHHHHHHcCCCEEEEE
Confidence 999999999999888888743
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.25 Score=55.02 Aligned_cols=131 Identities=21% Similarity=0.315 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHhhhcCCCEEEEeccCCC--------------ChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCH--H
Q 041113 652 SNKSPVEVASIATTLVEEGFTAIKLKVARRA--------------DPIKDAEVIQEVRKKVGHRIELRVDANRNWTY--Q 715 (983)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~--------------~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~--~ 715 (983)
.+.+++++.+.++...+.||..|-+-+|.|. +++.-.+.++++|++++ +.+.+=-+.+|+. .
T Consensus 72 ~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d--~pv~vKiR~G~~~~~~ 149 (321)
T PRK10415 72 AGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVD--VPVTLKIRTGWAPEHR 149 (321)
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcC--CceEEEEEccccCCcc
Confidence 3568999988888777889999999998741 24445677888888873 3333333355643 3
Q ss_pred HHHHHHhhcccCCCcee-------ecCCC---ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEc
Q 041113 716 EALEFGFLIKDCDLQYI-------EEPVQ---NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIK 784 (983)
Q Consensus 716 ~a~~~~~~l~~~~i~~i-------EeP~~---~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k 784 (983)
+++++++.+++.|+.+| ++-.. +++.++++++.+++||.+.=.+.+..+ +..+.+ .|+|.+.+=
T Consensus 150 ~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~d-----a~~~l~~~gadgVmiG 224 (321)
T PRK10415 150 NCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLK-----ARAVLDYTGADALMIG 224 (321)
T ss_pred hHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHH-----HHHHHhccCCCEEEEC
Confidence 68889999999888887 33322 577778899999999998888887653 444444 678888864
Q ss_pred CCCcC
Q 041113 785 PSVIG 789 (983)
Q Consensus 785 ~~~~G 789 (983)
-+-++
T Consensus 225 R~~l~ 229 (321)
T PRK10415 225 RAAQG 229 (321)
T ss_pred hHhhc
Confidence 43333
|
|
| >PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer [] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.069 Score=52.53 Aligned_cols=89 Identities=15% Similarity=0.095 Sum_probs=50.1
Q ss_pred hHHHHHHHHhcCCceEEEEccCCChhH-HHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCc
Q 041113 75 QMAEVLELVQGVNKGLLLVGAVHNEDE-IWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSE 153 (983)
Q Consensus 75 ~i~~~~~~L~~AkrPvIl~G~g~~~~~-~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~ 153 (983)
.++.++.+|.+||||++++|..+..+. .++........++|++.|.+.. ++. ++..|.+ ..-.......+.
T Consensus 23 ~~~~aa~~i~kAKrPllvvGp~vl~~~~~~~~~k~~~~~~i~~~at~~~~------~~~-~d~~~ky-~~~~~~~~l~~p 94 (167)
T PF02552_consen 23 PPEVAAKMIKKAKRPLLVVGPLVLWDWNEEAIEKAIAKKNIPIAATGFNI------IGM-PDYRPKY-PKIEPENELNDP 94 (167)
T ss_dssp HSHHHHHHHHHSSSEEEEE-STT--HHHHHHHHHHHHCCTSEEEEETCCH------CCH-CSSGCCE--HHHHHHHCCST
T ss_pred hHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHcCcceeeccccc------ccc-ccccccc-ccccHHHhcCCC
Confidence 347788999999999999999876433 4466677888999999998422 232 3333332 111122222222
Q ss_pred ccccc---CCCCEEEEeCCcc
Q 041113 154 SVKDW---IQFDVIIQIGSRI 171 (983)
Q Consensus 154 ~~~~~---~~aDlvl~iG~~~ 171 (983)
.-... .+.|++|.+|...
T Consensus 95 ~w~g~~g~g~~Dl~iFiGv~~ 115 (167)
T PF02552_consen 95 HWNGTDGHGNYDLVIFIGVHC 115 (167)
T ss_dssp T--TTTSS---SEEEEES--H
T ss_pred CCCccccCCcccEEEEecchH
Confidence 11111 3789999999875
|
The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.3 Score=55.76 Aligned_cols=121 Identities=12% Similarity=0.198 Sum_probs=77.9
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccC-C-------------------CChHH----HHHHHHHHHHHcCCCcEE--EEEc--
Q 041113 657 VEVASIATTLVEEGFTAIKLKVAR-R-------------------ADPIK----DAEVIQEVRKKVGHRIEL--RVDA-- 708 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~-~-------------------~~~~~----d~~~v~~vr~~~g~~~~l--~vDa-- 708 (983)
+++.+.++.+++.||..+-|+.+. . .+++. =++.|++||+++|+++.+ ++.+
T Consensus 150 ~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~ 229 (382)
T cd02931 150 GKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKS 229 (382)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechh
Confidence 455666667778999999999732 1 12222 257899999999988543 3332
Q ss_pred ----------------CCCCCHHHHHHHHhhcccCCCceeecCCC------------------ChHHHHHHHhhcCCcEE
Q 041113 709 ----------------NRNWTYQEALEFGFLIKDCDLQYIEEPVQ------------------NEEDIIKYCEESGLPVA 754 (983)
Q Consensus 709 ----------------N~~~~~~~a~~~~~~l~~~~i~~iEeP~~------------------~~~~~~~l~~~~~ipIa 754 (983)
.++++.++++++++.|++.++.||+=-.. ..+..+.+++..++||.
T Consensus 230 ~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi 309 (382)
T cd02931 230 YIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVI 309 (382)
T ss_pred hccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEE
Confidence 34789999999999999888888743110 01223556677778877
Q ss_pred eCCCccCcCCChHHHHHhhcCC-CceEEE
Q 041113 755 LDETIDKFQKDPLNMLEKYAHP-GIVAIV 782 (983)
Q Consensus 755 ~dEs~~~~~~~~~~~~~~~~~~-~~~~i~ 782 (983)
+-=.+.+.. ....+++. .+|.|.
T Consensus 310 ~~G~i~~~~-----~~~~~l~~g~~D~V~ 333 (382)
T cd02931 310 MAGRMEDPE-----LASEAINEGIADMIS 333 (382)
T ss_pred EeCCCCCHH-----HHHHHHHcCCCCeee
Confidence 766665543 24444443 366654
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.21 Score=56.55 Aligned_cols=78 Identities=14% Similarity=0.210 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHHH----HHHHHHHHHHcC----CCcEEEEEc-
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIKD----AEVIQEVRKKVG----HRIELRVDA- 708 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~d----~~~v~~vr~~~g----~~~~l~vDa- 708 (983)
+++++.++.+++.||..+-|+.+.+ .+++.. .+.+++||+++| +++.+.+--
T Consensus 144 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s 223 (353)
T cd04735 144 DAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFS 223 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEEC
Confidence 4566677777889999999997531 122222 578899999998 676554432
Q ss_pred -----CCCCCHHHHHHHHhhcccCCCceeec
Q 041113 709 -----NRNWTYQEALEFGFLIKDCDLQYIEE 734 (983)
Q Consensus 709 -----N~~~~~~~a~~~~~~l~~~~i~~iEe 734 (983)
.++++.++.+++++.|++.++.||+=
T Consensus 224 ~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~V 254 (353)
T cd04735 224 PEEPEEPGIRMEDTLALVDKLADKGLDYLHI 254 (353)
T ss_pred cccccCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 34678999999999999999999873
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.23 Score=49.38 Aligned_cols=106 Identities=17% Similarity=0.101 Sum_probs=76.5
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+-+++++.+|++ ..-++...+..+.++.. .++|+++|.-+-.....-+ +..+
T Consensus 50 A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l~~A~~--~~~Pvl~I~g~~~~~~~~~-----------------~~~q 110 (164)
T cd07039 50 AAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLYDAKR--DRAPVLAIAGQVPTDELGT-----------------DYFQ 110 (164)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHh--cCCCEEEEecCCcccccCC-----------------CCCc
Confidence 45567777777766766544 45556667799999987 8999988886554321110 1123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-....++++++++.+++++|+. .+||+.||+..|-
T Consensus 111 ~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~dv 160 (164)
T cd07039 111 EVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGDV 160 (164)
T ss_pred ccCHHHHHHHhhcEEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChHH
Confidence 468889999999899999999998888887753 4699999998763
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ |
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.42 Score=53.87 Aligned_cols=78 Identities=21% Similarity=0.179 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHH----HHHHHHHHHHHcCCCcEEEEEcC----
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIK----DAEVIQEVRKKVGHRIELRVDAN---- 709 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~----d~~~v~~vr~~~g~~~~l~vDaN---- 709 (983)
+++.+.++.+++.||..|-|+.+.. .+++. =++.|++||+++|+++.+.+=-|
T Consensus 144 ~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~ 223 (361)
T cd04747 144 AAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQ 223 (361)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccc
Confidence 4556667777789999999998651 12222 25789999999999865544222
Q ss_pred ------CCCCHHHHHHHHhhcccCCCceeec
Q 041113 710 ------RNWTYQEALEFGFLIKDCDLQYIEE 734 (983)
Q Consensus 710 ------~~~~~~~a~~~~~~l~~~~i~~iEe 734 (983)
++.++++++++++.|++.++.+|+=
T Consensus 224 ~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~v 254 (361)
T cd04747 224 QDYTARLADTPDELEALLAPLVDAGVDIFHC 254 (361)
T ss_pred cccccCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 2478999999999999888887753
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.044 Score=59.68 Aligned_cols=41 Identities=27% Similarity=0.523 Sum_probs=32.6
Q ss_pred CceEEEeCCCCCCh-hhHHHHH-H-Hhh-CCCEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFLGTG-EEWIPIM-K-AVS-GSARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~~-~~w~~~~-~-~l~-~~~~vi~~Dl~G~G~S 978 (983)
+|++|++|||+++. ..|...+ . .|. .+|+||++|++|++.+
T Consensus 36 ~p~vilIHG~~~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~ 80 (275)
T cd00707 36 RPTRFIIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGRGANP 80 (275)
T ss_pred CCcEEEEcCCCCCCCCcHHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 68999999999998 6887654 3 344 4699999999998543
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.18 Score=55.79 Aligned_cols=124 Identities=27% Similarity=0.407 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCC--------------CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCC--HHH
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARR--------------ADPIKDAEVIQEVRKKVGHRIELRVDANRNWT--YQE 716 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~--------------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~--~~~ 716 (983)
+.+++.+.+.++...+.||..|-+-+|.| .+++.=.+.|+++++.++ +.+.+----+|+ .++
T Consensus 62 g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~--~pvsvKiR~g~~~~~~~ 139 (309)
T PF01207_consen 62 GNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP--IPVSVKIRLGWDDSPEE 139 (309)
T ss_dssp -S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S--SEEEEEEESECT--CHH
T ss_pred eccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc--cceEEecccccccchhH
Confidence 46788888888877777999999999864 245666788999999884 777777777776 788
Q ss_pred HHHHHhhcccCCCcee-------ecCCC---ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEE
Q 041113 717 ALEFGFLIKDCDLQYI-------EEPVQ---NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVI 783 (983)
Q Consensus 717 a~~~~~~l~~~~i~~i-------EeP~~---~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~ 783 (983)
.+++++.+++.|+.+| +|-.. +|+.++++++..++||.+.=.+.+..| ...+.+. |+|.+.+
T Consensus 140 ~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d-----~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 140 TIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPED-----AERMLEQTGADGVMI 212 (309)
T ss_dssp HHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHH-----HHHHCCCH-SSEEEE
T ss_pred HHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHH-----HHHHHHhcCCcEEEE
Confidence 9999999999998877 33322 599999999999999999999998754 4455544 7888775
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.54 Score=52.19 Aligned_cols=135 Identities=21% Similarity=0.288 Sum_probs=101.0
Q ss_pred CCCCHHHHHHHHHHhhhcCCCEEEEeccCC--------------CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHH-
Q 041113 652 SNKSPVEVASIATTLVEEGFTAIKLKVARR--------------ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQE- 716 (983)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~G~~~~KiKig~~--------------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~- 716 (983)
.+.+|+.+++.++...+.||..|-+-+|.| .+++.=.+.|++++++++ ++.+.|=---+|+..+
T Consensus 74 ~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~-~iPVTVKiRlG~d~~~~ 152 (323)
T COG0042 74 GGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG-DIPVTVKIRLGWDDDDI 152 (323)
T ss_pred cCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC-CCCeEEEEecccCcccc
Confidence 356788888888888889999999999875 245556788999999996 7888888888886665
Q ss_pred -HHHHHhhcccCCCce-----------eecCCCChHHHHHHHhhcC-CcEEeCCCccCcCCChHHHHHhhcCCCceEEEE
Q 041113 717 -ALEFGFLIKDCDLQY-----------IEEPVQNEEDIIKYCEESG-LPVALDETIDKFQKDPLNMLEKYAHPGIVAIVI 783 (983)
Q Consensus 717 -a~~~~~~l~~~~i~~-----------iEeP~~~~~~~~~l~~~~~-ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~ 783 (983)
+.++++.+++.++.. ...|. +++.++++++..+ +||.+.-.+.+..+ ...-+...|+|.+.+
T Consensus 153 ~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~a-d~~~I~~vk~~~~~ipvi~NGdI~s~~~----a~~~l~~tg~DgVMi 227 (323)
T COG0042 153 LALEIARILEDAGADALTVHGRTRAQGYLGPA-DWDYIKELKEAVPSIPVIANGDIKSLED----AKEMLEYTGADGVMI 227 (323)
T ss_pred cHHHHHHHHHhcCCCEEEEecccHHhcCCCcc-CHHHHHHHHHhCCCCeEEeCCCcCCHHH----HHHHHHhhCCCEEEE
Confidence 777888888776543 34453 4899999999998 99999999998764 233334457888876
Q ss_pred cCCCcCCHH
Q 041113 784 KPSVIGGFE 792 (983)
Q Consensus 784 k~~~~GGl~ 792 (983)
-=.-.|-..
T Consensus 228 gRga~~nP~ 236 (323)
T COG0042 228 GRGALGNPW 236 (323)
T ss_pred cHHHccCCc
Confidence 544444333
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.7 Score=51.06 Aligned_cols=131 Identities=17% Similarity=0.261 Sum_probs=85.8
Q ss_pred EEEEeecCCCCHHHHHHHHHHhhhcC-CCEEEEeccCC----------CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 041113 645 KICALIDSNKSPVEVASIATTLVEEG-FTAIKLKVARR----------ADPIKDAEVIQEVRKKVGHRIELRVDANRNWT 713 (983)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~KiKig~~----------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~ 713 (983)
|+..++ ...+++++.+.++.+.+.| |..|-+-++.+ .+++.-.+.+++||+++ ++.+.+--+. +
T Consensus 93 p~i~si-~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~--~ 167 (301)
T PRK07259 93 PIIANV-AGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPVIVKLTP--N 167 (301)
T ss_pred cEEEEe-ccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEEcCC--C
Confidence 444555 2457899999999988898 99999865332 13444567889999887 5667766553 4
Q ss_pred HHHHHHHHhhcccCCCceee---------------cCC-------------C--ChHHHHHHHhhcCCcEEeCCCccCcC
Q 041113 714 YQEALEFGFLIKDCDLQYIE---------------EPV-------------Q--NEEDIIKYCEESGLPVALDETIDKFQ 763 (983)
Q Consensus 714 ~~~a~~~~~~l~~~~i~~iE---------------eP~-------------~--~~~~~~~l~~~~~ipIa~dEs~~~~~ 763 (983)
.++..++++.+++.++..|. +|. . ..+-.+++++.+++||.+.=.+.+..
T Consensus 168 ~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~ 247 (301)
T PRK07259 168 VTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAE 247 (301)
T ss_pred chhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHH
Confidence 45777888888877765442 110 0 13445667777788888777777654
Q ss_pred CChHHHHHhhcCCCceEEEEcC
Q 041113 764 KDPLNMLEKYAHPGIVAIVIKP 785 (983)
Q Consensus 764 ~~~~~~~~~~~~~~~~~i~~k~ 785 (983)
| ..+++..|+|.+++=-
T Consensus 248 d-----a~~~l~aGAd~V~igr 264 (301)
T PRK07259 248 D-----AIEFIMAGASAVQVGT 264 (301)
T ss_pred H-----HHHHHHcCCCceeEcH
Confidence 3 4444456777776543
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.38 Score=54.42 Aligned_cols=102 Identities=13% Similarity=0.062 Sum_probs=67.2
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHH----HHHHHHHHHHHcCCCc-EEEEE-----
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIK----DAEVIQEVRKKVGHRI-ELRVD----- 707 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~----d~~~v~~vr~~~g~~~-~l~vD----- 707 (983)
++..+.++.+++.||..+-|+.+.. .+++. =++.|++||+++|++. -+++-
T Consensus 159 ~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~ 238 (362)
T PRK10605 159 NDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTF 238 (362)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCcccc
Confidence 4566677778889999999997642 11211 2578999999999873 33342
Q ss_pred --cCCCCCHHH-HHHHHhhcccCCCceeecCCCC--------hHHHHHHHhhcCCcEEeCCC
Q 041113 708 --ANRNWTYQE-ALEFGFLIKDCDLQYIEEPVQN--------EEDIIKYCEESGLPVALDET 758 (983)
Q Consensus 708 --aN~~~~~~~-a~~~~~~l~~~~i~~iEeP~~~--------~~~~~~l~~~~~ipIa~dEs 758 (983)
..++++.++ ++++++.|++.++.+|+=-.++ .+-.+++++.+++||...-.
T Consensus 239 ~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~ 300 (362)
T PRK10605 239 NNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGA 300 (362)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCCCEEEeCC
Confidence 234688888 8999999999888888633221 11124555566666665433
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.98 Score=50.58 Aligned_cols=145 Identities=12% Similarity=0.209 Sum_probs=92.8
Q ss_pred EEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC--------------CChHHHHHHHHHHHHHcCCCc--EEEEEc
Q 041113 645 KICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR--------------ADPIKDAEVIQEVRKKVGHRI--ELRVDA 708 (983)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~--------------~~~~~d~~~v~~vr~~~g~~~--~l~vDa 708 (983)
|+...+ .+.+++++.+.++...+.||..|-+..|.+ .+++.-.+.++++|++++-.+ ++++-.
T Consensus 66 p~~vQl-~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~ 144 (333)
T PRK11815 66 PVALQL-GGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGI 144 (333)
T ss_pred cEEEEE-eCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeee
Confidence 344444 357899999999888889999999988764 123334578888898864333 334432
Q ss_pred CCCCCHHHHHHHHhhcccCCCceee--------c----------CCCChHHHHHHHhhc-CCcEEeCCCccCcCCChHHH
Q 041113 709 NRNWTYQEALEFGFLIKDCDLQYIE--------E----------PVQNEEDIIKYCEES-GLPVALDETIDKFQKDPLNM 769 (983)
Q Consensus 709 N~~~~~~~a~~~~~~l~~~~i~~iE--------e----------P~~~~~~~~~l~~~~-~ipIa~dEs~~~~~~~~~~~ 769 (983)
...-+.+++.++++.+++.|+.+|. | |-.+++.++++++.. ++||.+.=.+.+..|
T Consensus 145 ~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~ed----- 219 (333)
T PRK11815 145 DDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEE----- 219 (333)
T ss_pred CCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHH-----
Confidence 2223567788999999888877764 1 101366677888774 799888777777654
Q ss_pred HHhhcCCCceEEEEcCCCcCCHHHHHH
Q 041113 770 LEKYAHPGIVAIVIKPSVIGGFENAGL 796 (983)
Q Consensus 770 ~~~~~~~~~~~i~~k~~~~GGl~~~~~ 796 (983)
+..+.+ ++|.+.+=-...+...-..+
T Consensus 220 a~~~l~-~aDgVmIGRa~l~nP~~~~~ 245 (333)
T PRK11815 220 AKEHLQ-HVDGVMIGRAAYHNPYLLAE 245 (333)
T ss_pred HHHHHh-cCCEEEEcHHHHhCCHHHHH
Confidence 333443 47777764443344433333
|
|
| >PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.32 Score=53.15 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=82.3
Q ss_pred cCCCcEEEEEc--CCC-CCHHHHHHHHhhcccCCCceeecCCCC---hHHHHHHHhhcCCcEEeCCCccCcCCChHHHHH
Q 041113 698 VGHRIELRVDA--NRN-WTYQEALEFGFLIKDCDLQYIEEPVQN---EEDIIKYCEESGLPVALDETIDKFQKDPLNMLE 771 (983)
Q Consensus 698 ~g~~~~l~vDa--N~~-~~~~~a~~~~~~l~~~~i~~iEeP~~~---~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~ 771 (983)
+|.+..+.|-. |.. -+.+..++-+++|++.|-+.+-=-+++ .+.+..+++++++|+.+|=+..- +...
T Consensus 22 iGg~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlvADIHFd~------~lAl 95 (360)
T PRK00366 22 IGGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVADIHFDY------RLAL 95 (360)
T ss_pred ECCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEEEecCCCH------HHHH
Confidence 45555555542 221 144555556666777777777777774 34567888999999999987432 2344
Q ss_pred hhcCCCceEEEEcCCCcCC-HHHHHHHHHHHHHcCCcEEeCCCCch
Q 041113 772 KYAHPGIVAIVIKPSVIGG-FENAGLIARWAQRHGKMAVVSAAFES 816 (983)
Q Consensus 772 ~~~~~~~~~i~~k~~~~GG-l~~~~~~~~~A~~~gi~~~~~~~~es 816 (983)
..++.|+|.+.+.|+.+|. -....++++.|+++|+++-++-+++|
T Consensus 96 ~a~~~G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GS 141 (360)
T PRK00366 96 AAAEAGADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGS 141 (360)
T ss_pred HHHHhCCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCcc
Confidence 5566789999999999999 78999999999999999988877654
|
|
| >TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.31 Score=52.77 Aligned_cols=98 Identities=16% Similarity=0.197 Sum_probs=75.6
Q ss_pred CHHHHHHHHhhcccCCCceeecCCCCh---HHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcC
Q 041113 713 TYQEALEFGFLIKDCDLQYIEEPVQNE---EDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIG 789 (983)
Q Consensus 713 ~~~~a~~~~~~l~~~~i~~iEeP~~~~---~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~G 789 (983)
+.+..++-+++|++.|-+.+-=-+++. +.+.++++.+++||.+|=+..- ......++.|+|-+.+.|+.+|
T Consensus 32 Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADIHFd~------~lAl~a~~~g~dkiRINPGNig 105 (346)
T TIGR00612 32 DIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADIHFDY------RLAALAMAKGVAKVRINPGNIG 105 (346)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEeeCCCc------HHHHHHHHhccCeEEECCCCCC
Confidence 445555666667777777777677743 4567788899999999987532 1233445678999999999999
Q ss_pred CHHHHHHHHHHHHHcCCcEEeCCCCch
Q 041113 790 GFENAGLIARWAQRHGKMAVVSAAFES 816 (983)
Q Consensus 790 Gl~~~~~~~~~A~~~gi~~~~~~~~es 816 (983)
+-....++++.|+++|+++-++-+++|
T Consensus 106 ~~e~v~~vv~~ak~~~ipIRIGVN~GS 132 (346)
T TIGR00612 106 FRERVRDVVEKARDHGKAMRIGVNHGS 132 (346)
T ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCC
Confidence 999999999999999999988877654
|
Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.70 E-value=1.2 Score=49.17 Aligned_cols=142 Identities=16% Similarity=0.208 Sum_probs=89.7
Q ss_pred EEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC----------CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 041113 645 KICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR----------ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714 (983)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~----------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~ 714 (983)
|+..++. ..+++++.+.++.+.+.||..|-+.++.+ .+++.-.+.++++|+.+ ++.+.+--+ .+.
T Consensus 91 p~ivsi~-g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~--~~Pv~vKl~--~~~ 165 (296)
T cd04740 91 PVIASIA-GSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT--DVPVIVKLT--PNV 165 (296)
T ss_pred cEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc--CCCEEEEeC--CCc
Confidence 4444542 45688899999988889999999987642 13444567899999887 455555433 333
Q ss_pred HHHHHHHhhcccCCCceee---------------cCC-------------C--ChHHHHHHHhhcCCcEEeCCCccCcCC
Q 041113 715 QEALEFGFLIKDCDLQYIE---------------EPV-------------Q--NEEDIIKYCEESGLPVALDETIDKFQK 764 (983)
Q Consensus 715 ~~a~~~~~~l~~~~i~~iE---------------eP~-------------~--~~~~~~~l~~~~~ipIa~dEs~~~~~~ 764 (983)
++..++++.+++.++..|- .|. . .++..+++++.+++||.+.=.+.+..|
T Consensus 166 ~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~d 245 (296)
T cd04740 166 TDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGED 245 (296)
T ss_pred hhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 4667777777766654331 111 0 124456777778899888777777543
Q ss_pred ChHHHHHhhcCCCceEEEEcCCCcCCHHHHHH
Q 041113 765 DPLNMLEKYAHPGIVAIVIKPSVIGGFENAGL 796 (983)
Q Consensus 765 ~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~ 796 (983)
+.+++..|+|.+++--..+.|..-..+
T Consensus 246 -----a~~~l~~GAd~V~igra~l~~p~~~~~ 272 (296)
T cd04740 246 -----ALEFLMAGASAVQVGTANFVDPEAFKE 272 (296)
T ss_pred -----HHHHHHcCCCEEEEchhhhcChHHHHH
Confidence 455556778888865544444443333
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=93.59 E-value=1.1 Score=49.96 Aligned_cols=131 Identities=19% Similarity=0.203 Sum_probs=87.9
Q ss_pred EEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCC--------------ChHHHHHHHHHHHHHcCCCcEEEEEcCC
Q 041113 645 KICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRA--------------DPIKDAEVIQEVRKKVGHRIELRVDANR 710 (983)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~--------------~~~~d~~~v~~vr~~~g~~~~l~vDaN~ 710 (983)
|+...+ .+.+++++.+.++.+.+.||..|-+..|.+. +++.-.+.++++|+.++ +.+.+-...
T Consensus 64 p~i~ql-~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~--~pv~vKir~ 140 (319)
T TIGR00737 64 PISVQL-FGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD--IPVTVKIRI 140 (319)
T ss_pred eEEEEE-eCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC--CCEEEEEEc
Confidence 444444 3568999999999888899999999987631 22333567888888875 444444444
Q ss_pred CCCH--HHHHHHHhhcccCCCceeec-------CC---CChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhc-CCC
Q 041113 711 NWTY--QEALEFGFLIKDCDLQYIEE-------PV---QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA-HPG 777 (983)
Q Consensus 711 ~~~~--~~a~~~~~~l~~~~i~~iEe-------P~---~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~-~~~ 777 (983)
+|+. .+..++++.+++.++.+|-= -. .+++..+++++..++||.+.=.+.+..+ +..+. ..+
T Consensus 141 g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~d-----a~~~l~~~g 215 (319)
T TIGR00737 141 GWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPED-----AKAMLETTG 215 (319)
T ss_pred ccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHH-----HHHHHHhhC
Confidence 4532 34677888888877766531 11 1466667888888899988877777653 44444 467
Q ss_pred ceEEEE
Q 041113 778 IVAIVI 783 (983)
Q Consensus 778 ~~~i~~ 783 (983)
+|.+.+
T Consensus 216 ad~Vmi 221 (319)
T TIGR00737 216 CDGVMI 221 (319)
T ss_pred CCEEEE
Confidence 888775
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.24 Score=54.01 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=31.1
Q ss_pred CceEEEeCCCCCChhhHHHH--HHHhhC--CCEEEEEcC--CCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPI--MKAVSG--SARCISIDL--PGHGG 977 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~--~~~l~~--~~~vi~~Dl--~G~G~ 977 (983)
.|+|+|+||++++...|... +..+.. .+.||+||. +|+|.
T Consensus 42 ~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~ 87 (275)
T TIGR02821 42 VPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGI 87 (275)
T ss_pred CCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCC
Confidence 68999999999999988643 445543 599999998 55553
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.088 Score=59.68 Aligned_cols=43 Identities=9% Similarity=0.052 Sum_probs=35.7
Q ss_pred CceEEEeCCCCCChhhH-----HHHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEW-----IPIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w-----~~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
++|||++||+..+...| +.+++.|.+ +|+|+++|++|+|.|+.
T Consensus 62 ~~pvl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~ 110 (350)
T TIGR01836 62 KTPLLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADR 110 (350)
T ss_pred CCcEEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCHHHh
Confidence 56899999987666665 688998876 49999999999998754
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.25 Score=53.37 Aligned_cols=89 Identities=13% Similarity=0.058 Sum_probs=58.1
Q ss_pred ccchhhHHHHHHHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchh-hhhhhhhhccccccccchhh
Q 041113 70 SYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRK-LLASFLETEQNILFLDHLDH 148 (983)
Q Consensus 70 ~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~-~kg~~~~~hp~~~~~g~~g~ 148 (983)
....++++++++.|.+||||++.-|....-.+.+.-.+|+|++|+ |+.+.. .++..| ..++....-|-
T Consensus 63 v~~deAie~Aa~ILv~aKrPllyg~s~tscEA~~~gielaE~~ga-viD~~a-svchGp~~~alqe~g~p~--------- 131 (429)
T COG1029 63 VDYDEAIEKAAEILVNAKRPLLYGWSSTSCEAQELGIELAEKLGA-VIDSNA-SVCHGPSVLALQEAGKPT--------- 131 (429)
T ss_pred ccHHHHHHHHHHHHHhccCceEeccccchHHHHHHHHHHHHHhCc-EecCCC-ccccchHHHHHHhcCCcc---------
Confidence 456789999999999999999988776555556677899999999 555553 232222 11222111111
Q ss_pred hccCcccccc-CCCCEEEEeCCcccc
Q 041113 149 ALLSESVKDW-IQFDVIIQIGSRITS 173 (983)
Q Consensus 149 ~~~~~~~~~~-~~aDlvl~iG~~~~~ 173 (983)
.-.-++ ..+|+|+..|+.+.+
T Consensus 132 ----~TlgevKNraDviVyWGtNP~~ 153 (429)
T COG1029 132 ----ATLGEVKNRADVIVYWGTNPMH 153 (429)
T ss_pred ----cchhhhcccccEEEEeCCCccc
Confidence 111123 479999999998654
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.87 Score=51.00 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHHH----HHHHHHHHHHcCCCcEEEEEc----C
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIKD----AEVIQEVRKKVGHRIELRVDA----N 709 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~d----~~~v~~vr~~~g~~~~l~vDa----N 709 (983)
+++.+.++.+++.||..+-|+.+.+ .+++.. .+.|++||++++..+.+++-+ +
T Consensus 142 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~ 221 (337)
T PRK13523 142 LAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHP 221 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 3455666677789999999998731 122222 468899999984444444443 4
Q ss_pred CCCCHHHHHHHHhhcccCCCceeecCC--------C-----ChHHHHHHHhhcCCcEEeCCCccCc
Q 041113 710 RNWTYQEALEFGFLIKDCDLQYIEEPV--------Q-----NEEDIIKYCEESGLPVALDETIDKF 762 (983)
Q Consensus 710 ~~~~~~~a~~~~~~l~~~~i~~iEeP~--------~-----~~~~~~~l~~~~~ipIa~dEs~~~~ 762 (983)
++++.++++++++.|++.++.||+==. . +++..+++++..++||..-=.+.+.
T Consensus 222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~ 287 (337)
T PRK13523 222 GGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSG 287 (337)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCH
Confidence 578999999999999998888875311 1 1223355666666666554444443
|
|
| >PRK13761 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=1.7 Score=44.22 Aligned_cols=144 Identities=13% Similarity=0.082 Sum_probs=84.5
Q ss_pred cchhhHHHHHHHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchh----hhhhhhhhccccccccc-
Q 041113 71 YTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRK----LLASFLETEQNILFLDH- 145 (983)
Q Consensus 71 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~----~kg~~~~~hp~~~~~g~- 145 (983)
+..+++..++..|.-|++|||=+-+....-..+++.+||+.+|+++=...+. |..+ .+..+-+.-.-- .+|.
T Consensus 52 ~A~~A~raAaA~LLlA~~PVISVNGN~AAL~p~eiveLa~~~~A~iEVNLF~--RT~eR~~~I~~~l~~~Ga~~-vlG~~ 128 (248)
T PRK13761 52 SALEAERAAAALLLLAKHPVISVNGNTAALVPEEIVELAEALNAKLEVNLFY--RTEERVEKIAEVLREHGAKE-VLGTD 128 (248)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEcchHHhhChHHHHHHHHHhCCCEEEEecc--CCHHHHHHHHHHHHHcCCce-eeCCC
Confidence 3455777788888899999997766543334579999999999999887763 2221 112222211110 1111
Q ss_pred ----hhhhccC---ccccccCCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHH
Q 041113 146 ----LDHALLS---ESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDF 218 (983)
Q Consensus 146 ----~g~~~~~---~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 218 (983)
+....+. ....-+-.||+||+ .+.+-.-+.-+... .+++|.||++|-.- ....+++.|+.++-..+..
T Consensus 129 ~~~~ip~L~~~R~~v~~~GIy~ADVVLV---PLEDGDR~EaL~~m-GK~VI~IDLNPLSR-Tar~A~itIVDni~RA~p~ 203 (248)
T PRK13761 129 EDARIPGLDHERAKVSEDGIYSADVVLV---PLEDGDRTEALVKM-GKTVIAIDLNPLSR-TARTATITIVDNITRAVPN 203 (248)
T ss_pred CcCcCCCCCCccceECcccceeccEEEe---cCCCCcHHHHHHHc-CCeEEEEeCCCccc-ccccCceeeehhHHHHHHH
Confidence 0001111 11123568999998 33222222222232 45789999998422 2356789999888888877
Q ss_pred HHhc
Q 041113 219 LLKV 222 (983)
Q Consensus 219 L~~~ 222 (983)
|.+.
T Consensus 204 m~~~ 207 (248)
T PRK13761 204 MTEY 207 (248)
T ss_pred HHHH
Confidence 7664
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.2 Score=47.30 Aligned_cols=103 Identities=20% Similarity=0.238 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEE-------eccC-----CCChHHHHHHHHHHHHHcCC--CcEE--EEEcCCC--CCHH
Q 041113 654 KSPVEVASIATTLVEEGFTAIKL-------KVAR-----RADPIKDAEVIQEVRKKVGH--RIEL--RVDANRN--WTYQ 715 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~Ki-------Kig~-----~~~~~~d~~~v~~vr~~~g~--~~~l--~vDaN~~--~~~~ 715 (983)
.+++.+.+.++++.+.|...+|+ |.|. -.+.++=+++|++++++... ++.| |.|+-.. ...+
T Consensus 81 g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~ 160 (243)
T cd00377 81 GNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLD 160 (243)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHH
Confidence 36688888899999999999999 1221 02456678899999998754 5554 3566444 6899
Q ss_pred HHHHHHhhcccC--CCceeecCCCChHHHHHHHhhcCCcEEeCC
Q 041113 716 EALEFGFLIKDC--DLQYIEEPVQNEEDIIKYCEESGLPVALDE 757 (983)
Q Consensus 716 ~a~~~~~~l~~~--~i~~iEeP~~~~~~~~~l~~~~~ipIa~dE 757 (983)
+|++.++...+. +..|+|-|.. .+.++++.+..+.||..--
T Consensus 161 eai~Ra~ay~~AGAD~v~v~~~~~-~~~~~~~~~~~~~Pl~~~~ 203 (243)
T cd00377 161 EAIERAKAYAEAGADGIFVEGLKD-PEEIRAFAEAPDVPLNVNM 203 (243)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCC-HHHHHHHHhcCCCCEEEEe
Confidence 999999988776 5779988875 9999999999999988763
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.65 Score=45.46 Aligned_cols=102 Identities=17% Similarity=0.141 Sum_probs=69.6
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+..+|.|++.+..++++..+ |-|.. .....|.++.. .++|+++|.-..+..+.-. .+.+
T Consensus 47 a~~~A~G~a~~~~~~v~~~~~gpg~~-~~~~~l~~a~~--~~~Pvl~i~~~~~~~~~~~-----------------~~~q 106 (154)
T cd06586 47 AAGAAAGYARAGGPPVVIVTSGTGLL-NAINGLADAAA--EHLPVVFLIGARGISAQAK-----------------QTFQ 106 (154)
T ss_pred HHHHHHHHHHhhCCEEEEEcCCCcHH-HHHHHHHHHHh--cCCCEEEEeCCCChhhhcc-----------------Cccc
Confidence 67889998888664444555 77654 56677878877 7899866664444321110 1123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEE
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVE 449 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~ 449 (983)
..|...+.+.+......+.+.+++.+.+.+++ ..+||++|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip 153 (154)
T cd06586 107 SMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLP 153 (154)
T ss_pred ccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 46777888888888888888888777777665 34789999874
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.81 Score=51.31 Aligned_cols=103 Identities=13% Similarity=0.111 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHH----HHHHHHHHHHHcCCC-cEEEEEcC---
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIK----DAEVIQEVRKKVGHR-IELRVDAN--- 709 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~----d~~~v~~vr~~~g~~-~~l~vDaN--- 709 (983)
+.+.+.++.+++.||..+-|+.+.. .+++. =++.|++||+++|++ +.+++-+.
T Consensus 152 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~ 231 (338)
T cd02933 152 ADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTF 231 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccC
Confidence 4566677777889999999998751 12221 257899999999875 44444332
Q ss_pred ----CCCCHHHHHHHHhhcccCCCceeecCCC---------ChHHHHHHHhhcCCcEEeCCCc
Q 041113 710 ----RNWTYQEALEFGFLIKDCDLQYIEEPVQ---------NEEDIIKYCEESGLPVALDETI 759 (983)
Q Consensus 710 ----~~~~~~~a~~~~~~l~~~~i~~iEeP~~---------~~~~~~~l~~~~~ipIa~dEs~ 759 (983)
.+.+.++++++++.|++.++.+|+=-.. ..+..+++++.+++||..-=.+
T Consensus 232 ~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i 294 (338)
T cd02933 232 NDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGY 294 (338)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECCC
Confidence 2358899999999999888887763111 2333455666666666554444
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.43 Score=51.33 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=82.1
Q ss_pred cCCCcEEEEEc--CCCC-CHHHHHHHHhhcccCCCceeecCCC---ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHH
Q 041113 698 VGHRIELRVDA--NRNW-TYQEALEFGFLIKDCDLQYIEEPVQ---NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLE 771 (983)
Q Consensus 698 ~g~~~~l~vDa--N~~~-~~~~a~~~~~~l~~~~i~~iEeP~~---~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~ 771 (983)
+|.+..+.|-. |-.- +.+..+.-.++|++.|-+.+-=-++ +.+.+.++++++++|+.+|=+..- +.+.
T Consensus 16 vGgdaPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVaDiHf~~------rla~ 89 (361)
T COG0821 16 VGGDAPIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVADIHFDY------RLAL 89 (361)
T ss_pred ecCCCceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEEEeeccH------HHHH
Confidence 45555555432 1111 3444555556677777666666666 345678889999999999987541 2455
Q ss_pred hhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCch
Q 041113 772 KYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFES 816 (983)
Q Consensus 772 ~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es 816 (983)
...+.|++-+.|.|+.+|--.....+++.|+++|+++-++-+++|
T Consensus 90 ~~~~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~GS 134 (361)
T COG0821 90 EAAECGVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAGS 134 (361)
T ss_pred HhhhcCcceEEECCcccCcHHHHHHHHHHHHHcCCCEEEecccCc
Confidence 566778899999999999888999999999999999999888765
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.48 Score=50.90 Aligned_cols=136 Identities=18% Similarity=0.173 Sum_probs=91.9
Q ss_pred HHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcC-CCcEEEEEcCCC--------------C---CHHHHHHHHhhc
Q 041113 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVG-HRIELRVDANRN--------------W---TYQEALEFGFLI 724 (983)
Q Consensus 663 ~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g-~~~~l~vDaN~~--------------~---~~~~a~~~~~~l 724 (983)
++++...|...+ =+|. ..-+|.+.++.+.+.+| ..+.+.+|++.. | +..+.+++++.+
T Consensus 89 ~~~~~~~Ga~~v--ivgt--~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l 164 (254)
T TIGR00735 89 VDKLLRAGADKV--SINT--AAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEV 164 (254)
T ss_pred HHHHHHcCCCEE--EECh--hHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHH
Confidence 445556686664 4565 34567889999999998 578899997532 2 234567788888
Q ss_pred ccCCCceeec---------CCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEE-cCCCcCCHHH
Q 041113 725 KDCDLQYIEE---------PVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVI-KPSVIGGFEN 793 (983)
Q Consensus 725 ~~~~i~~iEe---------P~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~-k~~~~GGl~~ 793 (983)
++.++..|.= +-++++-++++++.+++||.+.=-+.+..| +..+...+ ++.+.+ +.-..|.+ .
T Consensus 165 ~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~d-----i~~~~~~g~~dgv~~g~a~~~~~~-~ 238 (254)
T TIGR00735 165 EKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEH-----FYEAFTKGKADAALAASVFHYREI-T 238 (254)
T ss_pred HHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHH-----HHHHHHcCCcceeeEhHHHhCCCC-C
Confidence 8877665432 112467778899889999887776677543 55555545 888665 33344544 4
Q ss_pred HHHHHHHHHHcCCcE
Q 041113 794 AGLIARWAQRHGKMA 808 (983)
Q Consensus 794 ~~~~~~~A~~~gi~~ 808 (983)
..++.+.++++|+++
T Consensus 239 ~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 239 IGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHHCCCcc
Confidence 778888999999873
|
|
| >PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.2 Score=46.06 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=28.1
Q ss_pred cccccccccccceeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHH
Q 041113 897 NDVICKTSMEEQVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIM 958 (983)
Q Consensus 897 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~ 958 (983)
+...+..... ....++++++..+|+ ++....+. +..||||+|||++|-..|.+++
T Consensus 58 Wr~~E~~lN~--~phf~t~I~g~~iHF-ih~rs~~~----~aiPLll~HGWPgSf~Ef~~vI 112 (112)
T PF06441_consen 58 WRKHEARLNS--FPHFKTEIDGLDIHF-IHVRSKRP----NAIPLLLLHGWPGSFLEFLKVI 112 (112)
T ss_dssp HHHHHHHHTT--S-EEEEEETTEEEEE-EEE--S-T----T-EEEEEE--SS--GGGGHHHH
T ss_pred hHHHHHHHHc--CCCeeEEEeeEEEEE-EEeeCCCC----CCeEEEEECCCCccHHhHHhhC
Confidence 3334444443 566666676555444 23333332 2689999999999999888764
|
Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A. |
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.2 Score=59.24 Aligned_cols=43 Identities=9% Similarity=0.069 Sum_probs=38.1
Q ss_pred CceEEEeCCCCCChhhHH-----HHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWI-----PIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~-----~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
++|||++||+......|+ .+++.|.+ +|+|+++|++|||.|.+
T Consensus 188 ~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~ 236 (532)
T TIGR01838 188 KTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQA 236 (532)
T ss_pred CCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccc
Confidence 689999999999989996 78888865 59999999999998865
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.6 Score=54.91 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChH----HHHHHHHHHHHHcCCCcEE--EEEc---
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPI----KDAEVIQEVRKKVGHRIEL--RVDA--- 708 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~----~d~~~v~~vr~~~g~~~~l--~vDa--- 708 (983)
+++.+.++.+++.||..|-|+.+.+ .+++ -=++.+++||+++|+++.+ ++-+
T Consensus 551 ~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~ 630 (765)
T PRK08255 551 DDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDW 630 (765)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccc
Confidence 4556667777789999999998731 1222 1257899999999988533 3332
Q ss_pred -CCCCCHHHHHHHHhhcccCCCceeecC--------C------CChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhh
Q 041113 709 -NRNWTYQEALEFGFLIKDCDLQYIEEP--------V------QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKY 773 (983)
Q Consensus 709 -N~~~~~~~a~~~~~~l~~~~i~~iEeP--------~------~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~ 773 (983)
.++|+.++++++++.|++.++.||+== . ...+..+++++..++||..-=.+.+.. ....+
T Consensus 631 ~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~-----~a~~~ 705 (765)
T PRK08255 631 VEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEAD-----HVNSI 705 (765)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHH-----HHHHH
Confidence 457899999999999999888887531 0 011223567777788888776666653 24445
Q ss_pred cCC-CceEEEE
Q 041113 774 AHP-GIVAIVI 783 (983)
Q Consensus 774 ~~~-~~~~i~~ 783 (983)
++. ++|.|-+
T Consensus 706 l~~g~~D~v~~ 716 (765)
T PRK08255 706 IAAGRADLCAL 716 (765)
T ss_pred HHcCCcceeeE
Confidence 543 4676554
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=91.91 E-value=2.1 Score=47.53 Aligned_cols=135 Identities=12% Similarity=0.206 Sum_probs=87.8
Q ss_pred EEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC--------------CChHHHHHHHHHHHHHcCCC--cEEEEEc
Q 041113 645 KICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR--------------ADPIKDAEVIQEVRKKVGHR--IELRVDA 708 (983)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~--------------~~~~~d~~~v~~vr~~~g~~--~~l~vDa 708 (983)
|+...+ .+.+++++.+.++...+.||..|-|.+|.+ .+++.-.+.|+++|++++-- +++++-.
T Consensus 56 p~~vQl-~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~ 134 (318)
T TIGR00742 56 PVALQL-GGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGI 134 (318)
T ss_pred cEEEEE-ccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 333444 356899999988888888999999998864 13444467888999886422 3444421
Q ss_pred CCCCCHHHHHHHHhhcccCCCceee--------cCC--------C--ChHHHHHHHhhc-CCcEEeCCCccCcCCChHHH
Q 041113 709 NRNWTYQEALEFGFLIKDCDLQYIE--------EPV--------Q--NEEDIIKYCEES-GLPVALDETIDKFQKDPLNM 769 (983)
Q Consensus 709 N~~~~~~~a~~~~~~l~~~~i~~iE--------eP~--------~--~~~~~~~l~~~~-~ipIa~dEs~~~~~~~~~~~ 769 (983)
+..-+.+.++++++.+++.++.+|. |-+ + +++..+++++.. .+||.+.=.+.+..|
T Consensus 135 ~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~d----- 209 (318)
T TIGR00742 135 DPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQ----- 209 (318)
T ss_pred CCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHH-----
Confidence 1111446788999999888877763 211 1 355566777776 799888777777654
Q ss_pred HHhhcCCCceEEEEcCC
Q 041113 770 LEKYAHPGIVAIVIKPS 786 (983)
Q Consensus 770 ~~~~~~~~~~~i~~k~~ 786 (983)
+..... ++|.+.+=-.
T Consensus 210 a~~~l~-g~dgVMigRg 225 (318)
T TIGR00742 210 IKQHLS-HVDGVMVGRE 225 (318)
T ss_pred HHHHHh-CCCEEEECHH
Confidence 333333 6777776433
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.85 E-value=4.6 Score=41.93 Aligned_cols=141 Identities=17% Similarity=0.131 Sum_probs=102.8
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..++++....++.+++.|++.+-+-.-. ..-.+.++++++.++++-++.|=+..-.|.+++.+..+ .|-.|+
T Consensus 21 ~~~~~~a~~~~~al~~~Gi~~iEit~~~----~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~----aGA~Fi 92 (213)
T PRK06552 21 GESKEEALKISLAVIKGGIKAIEVTYTN----PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAIL----AGAQFI 92 (213)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCC----ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHH----cCCCEE
Confidence 4688999999999999999999998753 34577899999988533358888888899999876544 678888
Q ss_pred ecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcC-CcEEeC
Q 041113 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHG-KMAVVS 811 (983)
Q Consensus 733 EeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~g-i~~~~~ 811 (983)
=-|.. -.++.+..++.++|+.-|=.-.+ .+....+.|+|++.+-|....|+.....+.. -+. ++++..
T Consensus 93 vsP~~-~~~v~~~~~~~~i~~iPG~~T~~-------E~~~A~~~Gad~vklFPa~~~G~~~ik~l~~---~~p~ip~~at 161 (213)
T PRK06552 93 VSPSF-NRETAKICNLYQIPYLPGCMTVT-------EIVTALEAGSEIVKLFPGSTLGPSFIKAIKG---PLPQVNVMVT 161 (213)
T ss_pred ECCCC-CHHHHHHHHHcCCCEECCcCCHH-------HHHHHHHcCCCEEEECCcccCCHHHHHHHhh---hCCCCEEEEE
Confidence 89988 56677777788999888754222 3445566799999887655566665444433 333 776544
Q ss_pred C
Q 041113 812 A 812 (983)
Q Consensus 812 ~ 812 (983)
+
T Consensus 162 G 162 (213)
T PRK06552 162 G 162 (213)
T ss_pred C
Confidence 3
|
|
| >cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins | Back alignment and domain information |
|---|
Probab=91.78 E-value=1.1 Score=44.53 Aligned_cols=109 Identities=15% Similarity=0.025 Sum_probs=73.8
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.++ ++.+|++ ...++.-.+..|.++.. .+.|+++|.-+...-..-+. ......+. ..
T Consensus 47 A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~~A~~--~~~Pvl~i~g~~~~~~~~~~---------~~~~~~~~-~~ 113 (162)
T cd07038 47 AGYAADGYARVK-GLGALVTTYGVGELSALNGIAGAYA--EHVPVVHIVGAPSTKAQASG---------LLLHHTLG-DG 113 (162)
T ss_pred HHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHHHHHH--cCCCEEEEecCCCccccccc---------cceeeccc-cc
Confidence 566777777776 6766655 56677778899999987 89999998876553211110 00000000 01
Q ss_pred CC-CHHHHHHHcCCceeeeCCHHHHHHHHHhhhc----cCCCEEEEEE
Q 041113 407 NI-SIQNLCLAHGLNHVQVKTKVELEEALSMSQH----LGTDRVIEVE 449 (983)
Q Consensus 407 ~~-df~~la~a~G~~~~~v~~~~eL~~aL~~a~~----~~~p~lIeV~ 449 (983)
.. |...+.+.+--...+|++++++.+.+++|+. .++|+.||+.
T Consensus 114 ~~~d~~~~~~~~tk~~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 114 DFDVFLKMFEEITCAAARLTDPENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred chHHHHHHHHhheeEEEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 22 4678888888889999999998888888753 3689999974
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many |
| >PRK11916 electron transfer flavoprotein subunit YdiR; Provisional | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.89 Score=49.88 Aligned_cols=115 Identities=9% Similarity=-0.068 Sum_probs=72.5
Q ss_pred ceEEEEcc-CCCh-hHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCCCEEE
Q 041113 88 KGLLLVGA-VHNE-DEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVII 165 (983)
Q Consensus 88 rPvIl~G~-g~~~-~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~aDlvl 165 (983)
..+|+.|+ |... +..+.+.+||+.+|+-|-.|-- -+ . ..|.+|.++- +|..|. .-.+||-|
T Consensus 194 A~vVV~~GrG~~~~e~~~~~~~LA~~LGaavG~SRp-~v-d--~~gW~p~~~Q----IGqTGk---------~V~P~lYi 256 (312)
T PRK11916 194 AKRVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRP-IA-E--GENWMERERY----IGVSGV---------LLKSDLYL 256 (312)
T ss_pred CCEEEECCCCCCChHHHHHHHHHHHHhCCEEEecHH-HH-c--cCCCCChhcE----ECCCCC---------CcCccEEE
Confidence 34566665 5543 3457999999999999866542 10 0 0134554432 344331 12579999
Q ss_pred EeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 166 QIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 166 ~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
.+|-+=.-.++.+. -..+.+|-||.|++.. -+...|..|++|+.+++.+|++.+
T Consensus 257 A~GISGAiQH~aGm---~~s~~IVAIN~Dp~AP-IF~~ADygiVgD~~~vlP~L~e~l 310 (312)
T PRK11916 257 TLGISGQIQHMVGG---NGAKVIVAINKDKNAP-IFNYADYGLVGDIYKVVPALISQL 310 (312)
T ss_pred EeccccHHHHHhhc---ccCCEEEEECCCCCCC-chhhCCeeEeeeHHHHHHHHHHHh
Confidence 99986432233221 1124588999999743 234588999999999999998865
|
|
| >TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit | Back alignment and domain information |
|---|
Probab=91.56 E-value=1.7 Score=42.76 Aligned_cols=103 Identities=11% Similarity=-0.018 Sum_probs=70.1
Q ss_pred hHHHHHhhhhccCceEEEEEccchhhhccchHHHHH-hhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILK-QRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~-~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+..+|-|+.++.+++++++.+=| +...++.|.++. . +++|+++|+-.-+.++....- +.. .+..
T Consensus 46 aa~~aAg~~~~~~~~~v~~~~sG-~gn~~~~l~~a~~~--~~~Pvl~i~g~rg~~~~~~~~---------q~~--~g~~- 110 (157)
T TIGR03845 46 GVGICAGAYLAGKKPAILMQSSG-LGNSINALASLNKT--YGIPLPILASWRGVYKEKIPA---------QIP--MGRA- 110 (157)
T ss_pred HHHHHHHHHHhcCCcEEEEeCCc-HHHHHHHHHHHHHc--CCCCEEEEEeccCCCCCCCcc---------ccc--hhhh-
Confidence 66777777776677899998888 667899999998 6 899999998776665443110 000 0000
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEE
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVE 449 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~ 449 (983)
=..+-+.+++.+..+++++++ .++++|+ +.++|+.|=+.
T Consensus 111 ---~~~~l~~~~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 111 ---TPKLLDTLGIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred ---hHHHHHHcCCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 011223356679999999999 8888876 34689887553
|
This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.6 Score=50.66 Aligned_cols=43 Identities=19% Similarity=0.429 Sum_probs=35.0
Q ss_pred CceEEEeCCCCCChhh-H-HHHHHHhhCC-CEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEE-W-IPIMKAVSGS-ARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~-w-~~~~~~l~~~-~~vi~~Dl~G~G~S~~ 980 (983)
+|.||++||+.+++.+ + +.++..+.++ |.++++|.||||.+..
T Consensus 75 ~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n 120 (345)
T COG0429 75 KPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEAN 120 (345)
T ss_pred CceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCcc
Confidence 6899999999987753 4 4567777654 9999999999998864
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.18 Score=65.34 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=34.8
Q ss_pred CceEEEeCCCCCChhhHHHH-----HHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPI-----MKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~-----~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
++||||+|||+.+..+|+.+ ++.|.+ .|+|+++| ||.|+++
T Consensus 67 ~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d---~G~~~~~ 113 (994)
T PRK07868 67 GPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVID---FGSPDKV 113 (994)
T ss_pred CCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEc---CCCCChh
Confidence 78999999999999999975 788865 59999999 5676653
|
|
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.25 E-value=1.9 Score=48.61 Aligned_cols=121 Identities=20% Similarity=0.271 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChH----HHHHHHHHHHHHcCCCc--EEEEEc---
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPI----KDAEVIQEVRKKVGHRI--ELRVDA--- 708 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~----~d~~~v~~vr~~~g~~~--~l~vDa--- 708 (983)
++.++.++.+++.||..+-|+-..+ .+.+ --++.|++||+++|++. -+|+=+
T Consensus 149 ~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~ 228 (363)
T COG1902 149 EDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDF 228 (363)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECcccc
Confidence 4566777778889999999997431 1222 12678999999999984 445433
Q ss_pred -C-CCCCHHHHHHHHhhcccCC-CceeecCCC--------ChH------H-HHHHHhhcCCcEEeCCCccCcCCChHHHH
Q 041113 709 -N-RNWTYQEALEFGFLIKDCD-LQYIEEPVQ--------NEE------D-IIKYCEESGLPVALDETIDKFQKDPLNML 770 (983)
Q Consensus 709 -N-~~~~~~~a~~~~~~l~~~~-i~~iEeP~~--------~~~------~-~~~l~~~~~ipIa~dEs~~~~~~~~~~~~ 770 (983)
+ ++|+.++++++++.|++.+ +.|++-=-. ... . -..++....+|+.+--.+.+.. ..
T Consensus 229 ~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~-----~A 303 (363)
T COG1902 229 FDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPE-----QA 303 (363)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHH-----HH
Confidence 2 3789999999999999988 566542211 011 1 2346666678888777766653 34
Q ss_pred HhhcCCC-ceEEE
Q 041113 771 EKYAHPG-IVAIV 782 (983)
Q Consensus 771 ~~~~~~~-~~~i~ 782 (983)
..+++.| +|.|-
T Consensus 304 e~~l~~g~aDlVa 316 (363)
T COG1902 304 EEILASGRADLVA 316 (363)
T ss_pred HHHHHcCCCCEEE
Confidence 5555554 66643
|
|
| >COG1701 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=91.12 E-value=3.1 Score=41.70 Aligned_cols=146 Identities=13% Similarity=0.056 Sum_probs=83.6
Q ss_pred ccchhhHHHHHHHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhcccccc-ccchhh
Q 041113 70 SYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILF-LDHLDH 148 (983)
Q Consensus 70 ~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~-~g~~g~ 148 (983)
.+..+++..++..|.-||+|||=+-+....-..+++.+||+.+|+.+-...+. |..+-.-.+-|--.-. + ..++|.
T Consensus 53 ~~A~eA~raAaA~LlLAk~PVISVNGN~AAL~p~e~v~La~~~~aklEVNLF~--RteeRv~~I~e~L~~~-Ga~~vLg~ 129 (256)
T COG1701 53 PPALEAIRAAAAALLLAKHPVISVNGNVAALVPEEVVELAEATGAKLEVNLFY--RTEERVRKIAEVLKEH-GAKEVLGT 129 (256)
T ss_pred chHHHHHHHHHHHHHhccCCeEEEcCceeeeCcHHHHHHHHHhCCceEEEeec--cCHHHHHHHHHHHHhc-CcceeecC
Confidence 34556777777788889999998776544334578999999999999887763 2211011111110000 0 011110
Q ss_pred ---------hccC---ccccccCCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHH
Q 041113 149 ---------ALLS---ESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFV 216 (983)
Q Consensus 149 ---------~~~~---~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l 216 (983)
..+. ....-+-.||+||+= +.+-.-+.-+..+ .+++|.||++|-.- ....+++.|+.++-..+
T Consensus 130 ~~~~~~ip~l~s~R~~v~~~GIy~ADVVLvp---LEDGDRteaLv~m-GK~ViaIDLNPLSR-Tar~AsItIVDnivRA~ 204 (256)
T COG1701 130 DPDAARIPGLESERGKVSEEGIYSADVVLVP---LEDGDRTEALVRM-GKTVIAIDLNPLSR-TARKASITIVDNIVRAV 204 (256)
T ss_pred CcccccCCCccccccccCcccceeccEEEEe---cCCCcHHHHHHHh-CCeEEEEeCCcccc-ccccCceeeeHHHHHHH
Confidence 0011 111235678999973 2221111222222 45788999998422 23567899988888888
Q ss_pred HHHHhcc
Q 041113 217 DFLLKVQ 223 (983)
Q Consensus 217 ~~L~~~~ 223 (983)
..|.+..
T Consensus 205 p~li~~~ 211 (256)
T COG1701 205 PNLIEFV 211 (256)
T ss_pred HHHHHHH
Confidence 8877653
|
|
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.25 Score=52.29 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=30.0
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGH 975 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~ 975 (983)
.|.|||+||+|++...|.++.+.|.+. +.+..++.+|+
T Consensus 16 ~~~vIlLHG~G~~~~~~~~l~~~l~~~~~~~~~i~~~g~ 54 (232)
T PRK11460 16 QQLLLLFHGVGDNPVAMGEIGSWFAPAFPDALVVSVGGP 54 (232)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHCCCCEEECCCCC
Confidence 689999999999999999999999754 34444445554
|
|
| >cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.81 Score=45.36 Aligned_cols=103 Identities=12% Similarity=-0.017 Sum_probs=70.5
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ +--++...+..+.++.. .+.|+++|.-+-.....- ....+
T Consensus 47 A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~A~~--~~~Pvl~i~g~~~~~~~~-----------------~~~~q 107 (162)
T cd07037 47 AAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVEAYY--SGVPLLVLTADRPPELRG-----------------TGANQ 107 (162)
T ss_pred HHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHHHHh--cCCCEEEEECCCCHHhcC-----------------CCCCc
Confidence 56678888888777777655 34455557789999987 899998887543321110 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHH------HHHHHHhhhc-----cCCCEEEEEE
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVE------LEEALSMSQH-----LGTDRVIEVE 449 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~e------L~~aL~~a~~-----~~~p~lIeV~ 449 (983)
..|-..+.+.+--...+|+++++ +.+.+++|+. .+||+.||+.
T Consensus 108 ~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 108 TIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred ccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 45677777777778889988887 6777776652 3689999985
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=90.76 E-value=2.7 Score=47.83 Aligned_cols=120 Identities=14% Similarity=0.100 Sum_probs=75.5
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHH----HHHHHHHHHHHcCCCc--EEEEEcC--
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIK----DAEVIQEVRKKVGHRI--ELRVDAN-- 709 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~----d~~~v~~vr~~~g~~~--~l~vDaN-- 709 (983)
+++.+.++.+++.||..+-|+.+.. .+++. =++.|++||+++|+++ .+++-+.
T Consensus 150 ~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~ 229 (370)
T cd02929 150 RWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDEL 229 (370)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHh
Confidence 4566677777889999999998751 11221 2578999999999885 4454332
Q ss_pred ----CCCCHHHHHHHHhhcccCCCceee-------cC-C-----C---ChHHHHHHHhhcCCcEEeCCCccCcCCChHHH
Q 041113 710 ----RNWTYQEALEFGFLIKDCDLQYIE-------EP-V-----Q---NEEDIIKYCEESGLPVALDETIDKFQKDPLNM 769 (983)
Q Consensus 710 ----~~~~~~~a~~~~~~l~~~~i~~iE-------eP-~-----~---~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~ 769 (983)
+.++.++++++++.|++. +.+++ .. . + ..+..+++++..++||..-=.+.+.. .
T Consensus 230 ~~~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~-----~ 303 (370)
T cd02929 230 IGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPD-----K 303 (370)
T ss_pred cCCCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHH-----H
Confidence 237899999999988763 23322 11 0 0 13333567777888887765555543 3
Q ss_pred HHhhcCCC-ceEEE
Q 041113 770 LEKYAHPG-IVAIV 782 (983)
Q Consensus 770 ~~~~~~~~-~~~i~ 782 (983)
...+++.+ +|.|.
T Consensus 304 ~~~~l~~g~~D~V~ 317 (370)
T cd02929 304 MVEVVKSGILDLIG 317 (370)
T ss_pred HHHHHHcCCCCeee
Confidence 44455444 66654
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=90.64 E-value=4.8 Score=43.81 Aligned_cols=113 Identities=14% Similarity=0.160 Sum_probs=79.1
Q ss_pred eeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEE------e----ccCC-----CChHHHHHHHHHHHHH-cCCCcEE--
Q 041113 643 SIKICALIDSNKSPVEVASIATTLVEEGFTAIKL------K----VARR-----ADPIKDAEVIQEVRKK-VGHRIEL-- 704 (983)
Q Consensus 643 ~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Ki------K----ig~~-----~~~~~d~~~v~~vr~~-~g~~~~l-- 704 (983)
.+|+..-...+.++..+.+.++++.+.|...+-+ | .|.. .+.++=.++|++++++ .++++.|
T Consensus 78 ~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiA 157 (285)
T TIGR02320 78 TKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIA 157 (285)
T ss_pred CCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 3565554444478999999999999999999888 1 1110 1345557888888877 5666655
Q ss_pred EEEcC-CCCCHHHHHHHHhhcccC--CCceeecCCCChHHHHHHHhhc-----CCcEEe
Q 041113 705 RVDAN-RNWTYQEALEFGFLIKDC--DLQYIEEPVQNEEDIIKYCEES-----GLPVAL 755 (983)
Q Consensus 705 ~vDaN-~~~~~~~a~~~~~~l~~~--~i~~iEeP~~~~~~~~~l~~~~-----~ipIa~ 755 (983)
|.|+- .....++|++.++...+. +..|+|-+..+.++++++.++. ++|+..
T Consensus 158 RTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~ 216 (285)
T TIGR02320 158 RVESLILGKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVI 216 (285)
T ss_pred ecccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEE
Confidence 45664 345789999999988776 5678886445688988887765 356654
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.41 Score=57.83 Aligned_cols=43 Identities=12% Similarity=-0.018 Sum_probs=33.0
Q ss_pred CceEEEeCCCCCChh---hHHH-HHHHh-hCCCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGE---EWIP-IMKAV-SGSARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~---~w~~-~~~~l-~~~~~vi~~Dl~G~G~S~~ 980 (983)
.|.||++||++.+.. .|.. ....| ++.|.|+++|+||||.|+.
T Consensus 22 ~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g 69 (550)
T TIGR00976 22 VPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEG 69 (550)
T ss_pred CCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCC
Confidence 689999999998763 2322 33444 5579999999999999975
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >PLN00022 electron transfer flavoprotein subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.96 Score=50.50 Aligned_cols=114 Identities=10% Similarity=0.045 Sum_probs=73.2
Q ss_pred ceEEEEcc-CCCh-hHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCCCEEE
Q 041113 88 KGLLLVGA-VHNE-DEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVII 165 (983)
Q Consensus 88 rPvIl~G~-g~~~-~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~aDlvl 165 (983)
-.+||.|+ |... +..+.+.+||+.||.-|-.|-- -+ -.|.+|.++- +|..|. .-.+||-|
T Consensus 237 A~vVVsgGRGv~~~en~~l~eeLA~~LGaavGaSRp-~v----D~GW~p~~~Q----IGqTGk---------~V~P~lYI 298 (356)
T PLN00022 237 AKVVVTGGRGLKSAENFKMLEKLADKLGGAVGASRA-AV----DAGFVPNDLQ----VGQTGK---------IVAPELYI 298 (356)
T ss_pred CCEEEECCCccCCHHHHHHHHHHHHHhCCceeccHH-HH----hCCCCChHhe----eccCCC---------CcCCcEEE
Confidence 34666665 5553 3456899999999998866542 10 0255554432 343331 12689999
Q ss_pred EeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccC
Q 041113 166 QIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQV 224 (983)
Q Consensus 166 ~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~ 224 (983)
.+|-+=.-.++.+ .. .+.+|-||.|++.. -+...|..|++|+.+++.+|++.++
T Consensus 299 A~GISGAiQH~~G----m~~s~~IVAIN~D~~AP-IF~~ADygIVgD~~evlP~Lie~lk 353 (356)
T PLN00022 299 AVGISGAIQHLAG----MKDSKVIVAINKDADAP-IFQVADYGLVADLFEAVPELLEKLP 353 (356)
T ss_pred EEecchHHHHHhh----cccCCEEEEECCCCCCC-chhhcCeeEeeeHHHHHHHHHHHHH
Confidence 9998632222222 22 34578999998743 2345889999999999999998753
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=90.06 E-value=3 Score=46.06 Aligned_cols=84 Identities=18% Similarity=0.216 Sum_probs=58.6
Q ss_pred EEEEeecCCCCHHHHHHHHHHhhhc--CCCEEEEeccCC----------CChHHHHHHHHHHHHHcCCCcEEEEEcCCCC
Q 041113 645 KICALIDSNKSPVEVASIATTLVEE--GFTAIKLKVARR----------ADPIKDAEVIQEVRKKVGHRIELRVDANRNW 712 (983)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~--G~~~~KiKig~~----------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~ 712 (983)
|+..++ .+.+++++.+.++.+.+. ++..|-+-+|.+ .+++.=.+.++++|+.+ ++.+.+--+.
T Consensus 92 pl~~qi-~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~--~~pv~vKi~~-- 166 (300)
T TIGR01037 92 PLIASV-YGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT--DVPVFAKLSP-- 166 (300)
T ss_pred cEEEEe-ecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEECCC--
Confidence 344444 245788888888887665 389999988753 13444467889999887 3566666553
Q ss_pred CHHHHHHHHhhcccCCCceee
Q 041113 713 TYQEALEFGFLIKDCDLQYIE 733 (983)
Q Consensus 713 ~~~~a~~~~~~l~~~~i~~iE 733 (983)
+.++..++++.+++.++.+|.
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~ 187 (300)
T TIGR01037 167 NVTDITEIAKAAEEAGADGLT 187 (300)
T ss_pred ChhhHHHHHHHHHHcCCCEEE
Confidence 446778888888888877774
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.58 Score=49.52 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=45.4
Q ss_pred cccCCCCEEEEeCCccccHHHHHHHHhc-CCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHH
Q 041113 156 KDWIQFDVIIQIGSRITSKRISQMIEEC-FPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFL 219 (983)
Q Consensus 156 ~~~~~aDlvl~iG~~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L 219 (983)
..+++||++|+||+++.-.......... ...++|.|+.++...+.....+..+.+++.+++..|
T Consensus 171 ~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 171 EDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred HHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 3467899999999998665544433222 234577799888765422457889999999999765
|
Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=89.97 E-value=12 Score=38.83 Aligned_cols=141 Identities=16% Similarity=0.158 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..++++..+.++.+.+.|++.+-+..-. ....+.|+++++.++.+ +.+=+..-.+.+++....+ .+..|+
T Consensus 18 ~~~~~~~~~~~~a~~~gGi~~iEvt~~~----~~~~~~i~~l~~~~~~~--~~iGaGTV~~~~~~~~a~~----aGA~fi 87 (206)
T PRK09140 18 GITPDEALAHVGALIEAGFRAIEIPLNS----PDPFDSIAALVKALGDR--ALIGAGTVLSPEQVDRLAD----AGGRLI 87 (206)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCC----ccHHHHHHHHHHHcCCC--cEEeEEecCCHHHHHHHHH----cCCCEE
Confidence 4588999999999999999999997643 23566899999998643 5667777778887765543 566777
Q ss_pred ecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCC
Q 041113 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSA 812 (983)
Q Consensus 733 EeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~ 812 (983)
=-|.. -.++.+.++..++++..+ +.+.. .+....+.|+|++.+=+...-|+....++..... +.++++.-+
T Consensus 88 vsp~~-~~~v~~~~~~~~~~~~~G--~~t~~-----E~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~~-~~ipvvaiG 158 (206)
T PRK09140 88 VTPNT-DPEVIRRAVALGMVVMPG--VATPT-----EAFAALRAGAQALKLFPASQLGPAGIKALRAVLP-PDVPVFAVG 158 (206)
T ss_pred ECCCC-CHHHHHHHHHCCCcEEcc--cCCHH-----HHHHHHHcCCCEEEECCCCCCCHHHHHHHHhhcC-CCCeEEEEC
Confidence 77877 445555666778998888 66653 3555566789998875544445555444333221 248766544
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=89.96 E-value=3.6 Score=43.18 Aligned_cols=122 Identities=13% Similarity=0.089 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCC--------------ChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRA--------------DPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEAL 718 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~--------------~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~ 718 (983)
..+++++.+.++.. +.++..|-+-+|.|. +++.-.+.++++|+. ++.+.|=-.-.|+..+.+
T Consensus 76 ~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~---~~PVsvKiR~~~~~~~~~ 151 (231)
T TIGR00736 76 FVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL---NKPIFVKIRGNCIPLDEL 151 (231)
T ss_pred cCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC---CCcEEEEeCCCCCcchHH
Confidence 45788888777665 558999999887642 444445667777742 233333323335556778
Q ss_pred HHHhhcccCCCcee--ecCCC-----ChHHHHHHHhhcC-CcEEeCCCccCcCCChHHHHHhhcCCCceEEEE
Q 041113 719 EFGFLIKDCDLQYI--EEPVQ-----NEEDIIKYCEESG-LPVALDETIDKFQKDPLNMLEKYAHPGIVAIVI 783 (983)
Q Consensus 719 ~~~~~l~~~~i~~i--EeP~~-----~~~~~~~l~~~~~-ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~ 783 (983)
++++.+++.+..+| .+=.+ +++.++++++..+ +||.+.=.+.+..| ...+.+.|+|.+++
T Consensus 152 ~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~ed-----a~e~l~~GAd~Vmv 219 (231)
T TIGR00736 152 IDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIES-----AKEMLKAGADFVSV 219 (231)
T ss_pred HHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHH-----HHHHHHhCCCeEEE
Confidence 88898988887654 32222 3666788888874 99999888888764 33444468888775
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.38 Score=64.78 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=39.4
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~ 979 (983)
+++++|+||+++++..|..+.+.|.++++|+++|+||||.+.
T Consensus 1068 ~~~l~~lh~~~g~~~~~~~l~~~l~~~~~v~~~~~~g~~~~~ 1109 (1296)
T PRK10252 1068 GPTLFCFHPASGFAWQFSVLSRYLDPQWSIYGIQSPRPDGPM 1109 (1296)
T ss_pred CCCeEEecCCCCchHHHHHHHHhcCCCCcEEEEECCCCCCCC
Confidence 679999999999999999999999999999999999999764
|
|
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=89.53 E-value=1.7 Score=52.87 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=76.8
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|.|.+.+++++.+|++ |=| +.-.+..|.+|-. .++|+++|.-.-....+-+ ...
T Consensus 55 A~~mAdgyar~tg~~gv~~~t~GPG-~~N~l~gla~A~~--~~~Pvl~ItG~~~~~~~~~-----------------~~~ 114 (576)
T PRK08611 55 AALAAAAYAKLTGKIGVCLSIGGPG-AIHLLNGLYDAKM--DHVPVLALAGQVTSDLLGT-----------------DFF 114 (576)
T ss_pred HHHHHHHHHHHhCCceEEEECCCCc-HHHHHHHHHHHhh--cCCCEEEEecCCcccccCC-----------------CCc
Confidence 56678888777777877766 444 4446789999887 8999998887655432110 112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
+.+|...+.+.+-....+|++++++...+.+|+ ...||+.|++..|-
T Consensus 115 q~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~Dv 165 (576)
T PRK08611 115 QEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDL 165 (576)
T ss_pred cccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhh
Confidence 346888899998888899999999888877764 34799999998653
|
|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=89.49 E-value=1.2 Score=54.18 Aligned_cols=106 Identities=11% Similarity=0.043 Sum_probs=75.8
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+-.++++.+|++ ---|+.-.+..+.+|-. .+.|+++|.-.-.....- ....+
T Consensus 55 A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gi~~A~~--~~~Pvl~i~G~~~~~~~~-----------------~~~~q 115 (572)
T PRK06456 55 AAHAADGYARASGVPGVCTATSGPGTTNLVTGLITAYW--DSSPVIAITGQVPRSVMG-----------------KMAFQ 115 (572)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHHHHHh--hCCCEEEEecCCCccccC-----------------CCCcc
Confidence 56778888777778888874 23344447799999987 899998887543322110 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-....+|++++++...+.+|+. .+||+.|++..|-
T Consensus 116 ~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 166 (572)
T PRK06456 116 EADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDI 166 (572)
T ss_pred ccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhH
Confidence 467888888888889999999998888888764 3699999998653
|
|
| >PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria | Back alignment and domain information |
|---|
Probab=89.40 E-value=0.76 Score=50.36 Aligned_cols=99 Identities=18% Similarity=0.209 Sum_probs=53.3
Q ss_pred CCCCccchHHHHHhhhhcc-CceEEEEEccchhhhc-cchHHHHHhhcc-C---CCEEEEEEeCCCCccccCCCCCCCCC
Q 041113 321 GASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHD-TNGLAILKQRMK-R---KPILMLVINNHGGAIFSLLPIADRTE 394 (983)
Q Consensus 321 G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~-~---lpv~iiV~NN~g~g~~~~~~~~~~~~ 394 (983)
|-+|| +++-|.||++-+ +.-|+|++|||.+==. ...-|.+.+ + + --.++=|++=|||.|-..
T Consensus 140 GELGY--aLshA~GA~~DnPdliv~~vvGDGEaETGplA~sWh~~k--flnP~~dGaVLPILhLNG~KI~~p-------- 207 (379)
T PF09364_consen 140 GELGY--ALSHAFGAVFDNPDLIVACVVGDGEAETGPLAASWHSNK--FLNPATDGAVLPILHLNGYKISNP-------- 207 (379)
T ss_dssp SSTS---HHHHHHHHHTT-TT-EEEEEEETTGGGSHHHHHHGGGGG--SS-TTTS-EEEEEEEE-SBSSSSB--------
T ss_pred cchhh--HHHHHhhcccCCCCeEEEEEecCCcccCCcccccccccc--eeCcccCceeeceEEecCccccCC--------
Confidence 78999 999999999999 9999999999997422 122222222 2 1 123444555567766421
Q ss_pred ccccccccccCCCCCHHHHHHHcCCceeeeCC--HHHHHHHHHh
Q 041113 395 PRILDQYFYTTHNISIQNLCLAHGLNHVQVKT--KVELEEALSM 436 (983)
Q Consensus 395 ~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~--~~eL~~aL~~ 436 (983)
. .+....+-++..+-+++|..-+.|+. ++++...+..
T Consensus 208 -T----il~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ 246 (379)
T PF09364_consen 208 -T----ILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAA 246 (379)
T ss_dssp ------HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHH
T ss_pred -e----EeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHH
Confidence 1 11112233466666777776666654 3344443333
|
PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A. |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.35 E-value=12 Score=38.31 Aligned_cols=139 Identities=14% Similarity=0.186 Sum_probs=103.6
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..++++..+.++.+++.|++.+-+-... ..-.+.|+++++.+ ++ +.|=+-.-.|.+++.+..+ .|-.|+
T Consensus 12 ~~~~~~a~~ia~al~~gGi~~iEit~~t----p~a~~~I~~l~~~~-~~--~~vGAGTVl~~e~a~~ai~----aGA~Fi 80 (201)
T PRK06015 12 IDDVEHAVPLARALAAGGLPAIEITLRT----PAALDAIRAVAAEV-EE--AIVGAGTILNAKQFEDAAK----AGSRFI 80 (201)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC----ccHHHHHHHHHHHC-CC--CEEeeEeCcCHHHHHHHHH----cCCCEE
Confidence 4688999999999999999999998754 33567788889888 44 7788888899999876644 688899
Q ss_pred ecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCC-CcCCHHHHHHHHHHHHHcCCcEEeC
Q 041113 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPS-VIGGFENAGLIARWAQRHGKMAVVS 811 (983)
Q Consensus 733 EeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~-~~GGl~~~~~~~~~A~~~gi~~~~~ 811 (983)
=-|.- -.++.+..++.++|..-|=.-.+ ......+.|++++.+=|. ..||..-...+..-- -+++++..
T Consensus 81 vSP~~-~~~vi~~a~~~~i~~iPG~~Tpt-------Ei~~A~~~Ga~~vK~FPa~~~GG~~yikal~~pl--p~~~l~pt 150 (201)
T PRK06015 81 VSPGT-TQELLAAANDSDVPLLPGAATPS-------EVMALREEGYTVLKFFPAEQAGGAAFLKALSSPL--AGTFFCPT 150 (201)
T ss_pred ECCCC-CHHHHHHHHHcCCCEeCCCCCHH-------HHHHHHHCCCCEEEECCchhhCCHHHHHHHHhhC--CCCcEEec
Confidence 99988 56666677788999988865443 255556679999888775 567776555554433 26776644
Q ss_pred C
Q 041113 812 A 812 (983)
Q Consensus 812 ~ 812 (983)
+
T Consensus 151 G 151 (201)
T PRK06015 151 G 151 (201)
T ss_pred C
Confidence 3
|
|
| >PRK00481 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=89.32 E-value=0.72 Score=49.15 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=47.5
Q ss_pred cccCCCCEEEEeCCccccHHHHHHHH--hcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhc
Q 041113 156 KDWIQFDVIIQIGSRITSKRISQMIE--ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKV 222 (983)
Q Consensus 156 ~~~~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~ 222 (983)
..+.++|++|++|+++.-........ .....++|.|+.++..+.. ..++.+.+|+.++|..|.+.
T Consensus 173 ~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~--~~~~~i~~~~~~~l~~l~~~ 239 (242)
T PRK00481 173 EALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDS--LFDLVIHGKAGEVVPELVEE 239 (242)
T ss_pred HHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCCC--ccCEEEECCHHHHHHHHHHH
Confidence 34578999999999976544443332 3334568889999876654 36789999999999988764
|
|
| >PRK14138 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=89.21 E-value=0.8 Score=48.76 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=48.5
Q ss_pred cccCCCCEEEEeCCccccHHHHHHHH--hcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 156 KDWIQFDVIIQIGSRITSKRISQMIE--ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 156 ~~~~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
..+.+||++|+||+++.-........ .....+++.|+.++..++. ..++.+.+++.+++..|.+.+
T Consensus 174 ~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~--~~~~~i~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 174 RLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDD--IATLKYNMDVVEFANRVMSEG 241 (244)
T ss_pred HHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCc--ceeEEEeCCHHHHHHHHHHHh
Confidence 44579999999999986555443322 2233468889998877664 468899999999999998753
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.97 E-value=7.9 Score=40.39 Aligned_cols=142 Identities=12% Similarity=0.068 Sum_probs=101.5
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCc-EEEEEcCCCCCHHHHHHHHhhcccCCCce
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRI-ELRVDANRNWTYQEALEFGFLIKDCDLQY 731 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~-~l~vDaN~~~~~~~a~~~~~~l~~~~i~~ 731 (983)
..++++..+.++.+++.|++.+-+-.-. ..-.+.++.+++.++... ++.|=+-.-.|.+++.+.. +.|-.|
T Consensus 23 ~~~~~~a~~~~~al~~gGi~~iEiT~~t----p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~----~aGA~F 94 (222)
T PRK07114 23 HADVEVAKKVIKACYDGGARVFEFTNRG----DFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYI----QLGANF 94 (222)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC----CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHH----HcCCCE
Confidence 4688999999999999999999998754 224556666665443211 4788888889999987654 368889
Q ss_pred eecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeC
Q 041113 732 IEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVS 811 (983)
Q Consensus 732 iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~ 811 (983)
+=-|.- -.++.+..++.++|+.-|=.-.+ .+....+.|++++.+=|...+|+.-...+..-. -+++++..
T Consensus 95 iVsP~~-~~~v~~~~~~~~i~~iPG~~Tps-------Ei~~A~~~Ga~~vKlFPA~~~G~~~ikal~~p~--p~i~~~pt 164 (222)
T PRK07114 95 IVTPLF-NPDIAKVCNRRKVPYSPGCGSLS-------EIGYAEELGCEIVKLFPGSVYGPGFVKAIKGPM--PWTKIMPT 164 (222)
T ss_pred EECCCC-CHHHHHHHHHcCCCEeCCCCCHH-------HHHHHHHCCCCEEEECcccccCHHHHHHHhccC--CCCeEEeC
Confidence 999988 56677777788999988865433 355566789999888887788866554444333 24665544
Q ss_pred C
Q 041113 812 A 812 (983)
Q Consensus 812 ~ 812 (983)
+
T Consensus 165 G 165 (222)
T PRK07114 165 G 165 (222)
T ss_pred C
Confidence 3
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=88.60 E-value=5.4 Score=42.16 Aligned_cols=119 Identities=13% Similarity=0.186 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCC--------------ChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRA--------------DPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEAL 718 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~--------------~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~ 718 (983)
+.+++++.+.++...+ +...|-+-+|.+. +++.=.+.++++|+ . ++.+.+=-.-.|+ ++.+
T Consensus 81 g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~--~~pVsvKir~g~~-~~~~ 155 (233)
T cd02911 81 SSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-T--GVPVSVKIRAGVD-VDDE 155 (233)
T ss_pred CCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-c--CCCEEEEEcCCcC-cCHH
Confidence 4578888877776655 4588888877531 24444677888887 3 3444444444577 7788
Q ss_pred HHHhhcccCCCceee-----cCCC-ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEE
Q 041113 719 EFGFLIKDCDLQYIE-----EPVQ-NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVI 783 (983)
Q Consensus 719 ~~~~~l~~~~i~~iE-----eP~~-~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~ 783 (983)
++++.+++.++.+|= +... +++.+++++ .++||.+.=.+.+..+ ...++..|+|.+++
T Consensus 156 ~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~--~~ipVIgnGgI~s~ed-----a~~~l~~GaD~Vmi 219 (233)
T cd02911 156 ELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS--TELFIIGNNSVTTIES-----AKEMFSYGADMVSV 219 (233)
T ss_pred HHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc--CCCEEEEECCcCCHHH-----HHHHHHcCCCEEEE
Confidence 888989888776651 1101 344444444 5789888877777653 44455567888775
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=88.55 E-value=1.6 Score=52.96 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=76.5
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|.|.+.+++++.+|++ |=| +.-.+..|..|-. .+.|+++|.-.-..+.+-+ ...
T Consensus 65 A~~~A~gyar~tg~~gv~~~t~GPG-~~N~~~gl~~A~~--~~~Pvl~ItG~~~~~~~~~-----------------~~~ 124 (571)
T PRK07710 65 AIHAAEGYARISGKPGVVIATSGPG-ATNVVTGLADAMI--DSLPLVVFTGQVATSVIGS-----------------DAF 124 (571)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHHHhh--cCCCEEEEeccCCccccCC-----------------CCc
Confidence 67788888887788888776 454 4446789999887 8999988886544331110 112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
+.+|...+.+.+=....+|++++++...+++|+. .+||+.|++..|
T Consensus 125 q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 125 QEADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred cccchhhhhhcccceEEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence 3467888888887788999999998888888763 259999999876
|
|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=88.52 E-value=1.8 Score=52.25 Aligned_cols=105 Identities=9% Similarity=-0.033 Sum_probs=75.8
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+.+++++.+|++ -.-|+.-.+..+..|-. .++|+++|.-.=....+- . ...+
T Consensus 50 A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i~~A~~--~~~Pll~i~g~~~~~~~~-------------~----~~~q 110 (547)
T PRK08322 50 AAFMAATYGRLTGKAGVCLSTLGPGATNLVTGVAYAQL--GGMPMVAITGQKPIKRSK-------------Q----GSFQ 110 (547)
T ss_pred HHHHHHHHHHhhCCCEEEEECCCccHhHHHHHHHHHhh--cCCCEEEEeccccccccC-------------C----Cccc
Confidence 67788888888777777665 34455567899999987 899998887543222110 0 0123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
..|...+.+.+--...+|++++++.+.+.+|+. .+||+.|++..|
T Consensus 111 ~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 111 IVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred cccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 467888888887788999999999888888763 258999999875
|
|
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=88.50 E-value=1.7 Score=52.02 Aligned_cols=106 Identities=11% Similarity=0.065 Sum_probs=75.7
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ ---|+.-.+..+.+|.. .+.|+++|.-.-.....- ....+
T Consensus 51 A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl~~A~~--~~~Pvl~i~G~~~~~~~~-----------------~~~~q 111 (514)
T PRK07586 51 ATGAADGYARMAGKPAATLLHLGPGLANGLANLHNARR--ARTPIVNIVGDHATYHRK-----------------YDAPL 111 (514)
T ss_pred HHHHHHHHHHHHCCCEEEEecccHHHHHHHHHHHHHHh--cCCCEEEEecCCchhccC-----------------CCccc
Confidence 56677787777777777654 33445667888888887 899998887653322110 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-....+|++++++.+.+++|+. .+||+.|++..|-
T Consensus 112 ~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv 162 (514)
T PRK07586 112 TSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQVATLILPADV 162 (514)
T ss_pred ccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccch
Confidence 468888888888888999999998888887763 3699999999864
|
|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=88.48 E-value=1.7 Score=52.88 Aligned_cols=105 Identities=16% Similarity=0.140 Sum_probs=76.1
Q ss_pred hHHHHHhhhhccCceEEEEEc-cchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVG-DISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~G-DGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.++++- --|+.-.++.+.+|.. .+.|+++|.-.=....+- ....+
T Consensus 50 A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i~~A~~--~~~Pvl~I~G~~~~~~~~-----------------~~~~q 110 (586)
T PRK06276 50 AAHAADGYARASGKVGVCVATSGPGATNLVTGIATAYA--DSSPVIALTGQVPTKLIG-----------------NDAFQ 110 (586)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHHh--cCCCEEEEeCCCCccccC-----------------CCCCc
Confidence 677888888887777777653 3455557899999987 899998887422211000 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-----CCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-----GTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-----~~p~lIeV~~~ 451 (983)
.+|...+++.+-....+|++++++...+.+|++. +||+.|+|..|
T Consensus 111 ~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 111 EIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred cccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 4688889999988899999999988888887642 68999999876
|
|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=88.23 E-value=1.8 Score=52.39 Aligned_cols=105 Identities=12% Similarity=0.038 Sum_probs=75.5
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+.+++++.+|++ |=|... .+..+.+|.. .+.|+++|.-.-....+.+ ...
T Consensus 54 A~~~A~gyar~tg~~gv~~vt~GpG~~N-~l~gl~~A~~--~~~PvlvisG~~~~~~~~~-----------------~~~ 113 (552)
T PRK08617 54 AAFMAAAIGRLTGKPGVVLVTSGPGVSN-LATGLVTATA--EGDPVVAIGGQVKRADRLK-----------------RTH 113 (552)
T ss_pred HHHHHHhHhhhcCCCEEEEECCCCcHhH-hHHHHHHHhh--cCCCEEEEecCCcccccCC-----------------CCc
Confidence 55677777777777888776 554444 6789999887 8999988886433221110 012
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
+.+|-..+.+.+-....+|++++++...+++|++ .+||+.||+..|-
T Consensus 114 q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 165 (552)
T PRK08617 114 QSMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDV 165 (552)
T ss_pred cccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhhh
Confidence 4467778888888889999999998888888764 2589999998763
|
|
| >cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E | Back alignment and domain information |
|---|
Probab=88.12 E-value=1 Score=47.43 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=45.0
Q ss_pred ccCCCCEEEEeCCccccHHHHHHHH--hcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHH
Q 041113 157 DWIQFDVIIQIGSRITSKRISQMIE--ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFL 219 (983)
Q Consensus 157 ~~~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L 219 (983)
.+.++|++|++|+++.-........ .....++|.|+.++..+. ...++.|.+|+..+|.+|
T Consensus 161 ~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~--~~~~~~i~g~~~~~l~~l 223 (224)
T cd01412 161 ALAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLS--PIADFAFRGKAGEVLPAL 223 (224)
T ss_pred HHHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCC--CcCCEEEECCHHHHHHHh
Confidence 4578999999999875544433333 223446888999988765 456889999999999886
|
coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity. |
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.00 E-value=8.1 Score=41.97 Aligned_cols=134 Identities=13% Similarity=0.136 Sum_probs=87.5
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc---CCCc-----------EEEEEcC
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV---GHRI-----------ELRVDAN 709 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~---g~~~-----------~l~vDaN 709 (983)
||+.-.++-+.+.+ .+.++++.||+.+-+.-.. .+.+++++..+++.+.. |-.+ .-..+..
T Consensus 78 VPV~lHLDHg~~~e----~i~~ai~~GftSVM~DgS~-lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~ 152 (285)
T PRK07709 78 VPVAIHLDHGSSFE----KCKEAIDAGFTSVMIDASH-HPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEG 152 (285)
T ss_pred CcEEEECCCCCCHH----HHHHHHHcCCCEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCccccc
Confidence 56655665555554 3556678899999998665 56788888777776532 1110 0011112
Q ss_pred CCC-CHHHHHHHHhhccc----------CCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCc
Q 041113 710 RNW-TYQEALEFGFLIKD----------CDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGI 778 (983)
Q Consensus 710 ~~~-~~~~a~~~~~~l~~----------~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~ 778 (983)
.-| ++++|.+|.++..- +|+ |-.+|--+++-++++++.+++|+.+.=.--... +++++.+..|+
T Consensus 153 ~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~-Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~----e~~~~ai~~Gi 227 (285)
T PRK07709 153 VIYADPAECKHLVEATGIDCLAPALGSVHGP-YKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPT----ADIEKAISLGT 227 (285)
T ss_pred ccCCCHHHHHHHHHHhCCCEEEEeecccccC-cCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCH----HHHHHHHHcCC
Confidence 226 89999999886522 122 334564479999999999999998876544432 46888888898
Q ss_pred eEEEEcCCC
Q 041113 779 VAIVIKPSV 787 (983)
Q Consensus 779 ~~i~~k~~~ 787 (983)
.=||+....
T Consensus 228 ~KiNi~T~l 236 (285)
T PRK07709 228 SKINVNTEN 236 (285)
T ss_pred eEEEeChHH
Confidence 777887653
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=87.98 E-value=15 Score=37.91 Aligned_cols=139 Identities=16% Similarity=0.178 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..++++..+.++.+++.|++.+-+-... ..-.+.++++++.+ + ++.|=|-.-.|.+++.+..+ .|-.|+
T Consensus 16 ~~~~e~a~~~~~al~~~Gi~~iEit~~t----~~a~~~i~~l~~~~-~--~~~vGAGTVl~~~~a~~a~~----aGA~Fi 84 (204)
T TIGR01182 16 IDDVDDALPLAKALIEGGLRVLEVTLRT----PVALDAIRLLRKEV-P--DALIGAGTVLNPEQLRQAVD----AGAQFI 84 (204)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCC----ccHHHHHHHHHHHC-C--CCEEEEEeCCCHHHHHHHHH----cCCCEE
Confidence 4688999999999999999999998743 34567788999888 4 47888888899999876654 678889
Q ss_pred ecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCC-cCCHHHHHHHHHHHHHcCCcEEeC
Q 041113 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSV-IGGFENAGLIARWAQRHGKMAVVS 811 (983)
Q Consensus 733 EeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~-~GGl~~~~~~~~~A~~~gi~~~~~ 811 (983)
=-|.. -.++.+.+++.++|+.-|=. +.. ......+.|++.+.+=|.- .||..-...+..-. -+++++..
T Consensus 85 vsP~~-~~~v~~~~~~~~i~~iPG~~--Tpt-----Ei~~A~~~Ga~~vKlFPA~~~GG~~yikal~~pl--p~i~~~pt 154 (204)
T TIGR01182 85 VSPGL-TPELAKHAQDHGIPIIPGVA--TPS-----EIMLALELGITALKLFPAEVSGGVKMLKALAGPF--PQVRFCPT 154 (204)
T ss_pred ECCCC-CHHHHHHHHHcCCcEECCCC--CHH-----HHHHHHHCCCCEEEECCchhcCCHHHHHHHhccC--CCCcEEec
Confidence 88877 55666677788999988654 332 2555566799998887755 67777665555444 36776644
Q ss_pred C
Q 041113 812 A 812 (983)
Q Consensus 812 ~ 812 (983)
+
T Consensus 155 G 155 (204)
T TIGR01182 155 G 155 (204)
T ss_pred C
Confidence 3
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=87.94 E-value=1.8 Score=52.70 Aligned_cols=104 Identities=15% Similarity=0.119 Sum_probs=75.9
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+-+++++.+|++ |= |+.-.+..+.+|.. .+.|+++|.-.-.....- . ...
T Consensus 54 A~~mAdgyar~tg~~gv~~vt~GP-G~~N~l~gl~~A~~--~~~Pvl~i~G~~~~~~~~-------------~----~~~ 113 (574)
T PRK06466 54 ATHMADGYARATGKTGVVLVTSGP-GATNAITGIATAYM--DSIPMVVLSGQVPSTLIG-------------E----DAF 113 (574)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCc-cHHHHHHHHHHHHh--cCCCEEEEecCCCccccC-------------C----Ccc
Confidence 55677887777777777766 44 44447899999987 899998888644322100 0 112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-----CCCEEEEEEcC
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-----GTDRVIEVESC 451 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-----~~p~lIeV~~~ 451 (983)
+.+|...+.+.+=....+|++++++...+++|+.. +||+.|++..|
T Consensus 114 q~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 114 QETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred cccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 34688889998888899999999999988887642 69999999877
|
|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=87.92 E-value=1.7 Score=52.09 Aligned_cols=105 Identities=14% Similarity=0.130 Sum_probs=77.1
Q ss_pred hHHHHHhhhhccCceEEEE--EccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCV--VGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i--~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+-+++++-||+ .|=|+ ...+..|.+|.. -+.|+++|.-.=. ...+ -....
T Consensus 51 Aa~mAdgyar~TGkpgV~~~tsGPGa-tN~~tgla~A~~--d~~Pll~itGqv~-~~~~----------------g~~af 110 (550)
T COG0028 51 AAFAADGYARATGKPGVCLVTSGPGA-TNLLTGLADAYM--DSVPLLAITGQVP-TSLI----------------GTDAF 110 (550)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCcH-HHHHHHHHHHHh--cCCCEEEEeCCcc-cccc----------------Ccchh
Confidence 6788888888887776664 35544 456789999987 7899988875211 1111 01122
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
+..|...+.+.+=-+.++|.+++++...+++|++ .+||++|++..|-
T Consensus 111 Qe~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv 162 (550)
T COG0028 111 QEVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDV 162 (550)
T ss_pred hhcchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhH
Confidence 4679999999998899999999999999999874 3589999988664
|
|
| >PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional | Back alignment and domain information |
|---|
Probab=87.91 E-value=2.9 Score=45.97 Aligned_cols=114 Identities=8% Similarity=-0.023 Sum_probs=72.2
Q ss_pred ceEEEEcc-CCCh-hHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCCCEEE
Q 041113 88 KGLLLVGA-VHNE-DEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVII 165 (983)
Q Consensus 88 rPvIl~G~-g~~~-~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~aDlvl 165 (983)
-.+|+.|+ |... +..+.+.+||+.+|.-|-.|--. . . ..|.+|.++- +|..|. .-.+||-|
T Consensus 195 A~vVVsgGRG~~~~E~~~l~eeLA~~LGaavg~SRp~-v-d--~~gW~p~~~Q----IGqTGk---------~V~P~lYi 257 (313)
T PRK03363 195 ARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPV-A-E--NEKWMEHERY----VGISNL---------MLKPELYL 257 (313)
T ss_pred CCEEEEcCCCCCCHHHHHHHHHHHHHhCCeEEecHHH-H-c--cCCCCCHHhe----ecCCCC---------CcCccEEE
Confidence 34666665 5543 34568999999999998665410 0 0 0135554322 444431 12579999
Q ss_pred EeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 166 QIGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 166 ~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
.+|-+=.-.++.+ ... +.+|-||.||+.. -+...|..|++|+.+++.+|++.+
T Consensus 258 A~GISGaiQH~~G----m~~s~~IVAIN~Dp~AP-IF~~ADygiVgD~~eilP~L~e~l 311 (313)
T PRK03363 258 AVGISGQIQHMVG----ANASQTIFAINKDKNAP-IFQYADYGIVGDAVKILPALTAAL 311 (313)
T ss_pred EEccccHHHHHhh----cccCCEEEEEcCCCCCC-chhhCCeeEeeeHHHHHHHHHHHh
Confidence 9998632222222 222 4578999998743 234588999999999999998865
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=87.66 E-value=1.6 Score=48.62 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=34.5
Q ss_pred CceEEEeCCCC---CChhhHHHHHHHhhC--CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFL---GTGEEWIPIMKAVSG--SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~---~~~~~w~~~~~~l~~--~~~vi~~Dl~G~G~S~ 979 (983)
.|.||++||-+ ++..+|..+...|++ ++.|+++|.|......
T Consensus 81 ~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~~ 127 (318)
T PRK10162 81 QATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEAR 127 (318)
T ss_pred CCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCCC
Confidence 68899999966 677789999888875 5999999999765543
|
|
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.56 E-value=2.2 Score=51.50 Aligned_cols=106 Identities=15% Similarity=0.010 Sum_probs=75.2
Q ss_pred hHHHHHhhhhccCceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+-+++++.+|++-=| |+.-.+..+.+|-. .+.|+++|.-.-....+- .+..+
T Consensus 51 A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l~~A~~--~~~Pvl~i~G~~~~~~~~-----------------~~~~q 111 (549)
T PRK06457 51 AALAASVEAKITGKPSACMGTSGPGSIHLLNGLYDAKM--DHAPVIALTGQVESDMIG-----------------HDYFQ 111 (549)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHHHHHHh--cCCCEEEEecCCCccccC-----------------CCccc
Confidence 55677887777778888775322 45556789999987 899998888643221100 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-....+|++++++...+++|+. .+||+.|++..|-
T Consensus 112 ~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv 161 (549)
T PRK06457 112 EVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISKRGVAHINLPVDI 161 (549)
T ss_pred ccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhH
Confidence 467788888777788899999998888877753 4699999998763
|
|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=87.35 E-value=2.3 Score=51.70 Aligned_cols=106 Identities=13% Similarity=0.082 Sum_probs=75.7
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ .--|+.-.+..+.+|-. .+.|+++|.-.-.....- ....+
T Consensus 54 A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i~~A~~--~~~Pvlvi~G~~~~~~~~-----------------~~~~q 114 (574)
T PRK06882 54 AVHMADGYARSTGKVGCVLVTSGPGATNAITGIATAYT--DSVPLVILSGQVPSNLIG-----------------TDAFQ 114 (574)
T ss_pred HHHHHHHHHHhhCCCeEEEECCCccHHHHHHHHHHHhh--cCCCEEEEecCCCccccC-----------------CCccc
Confidence 56778887777777777665 33345557899999987 899998887543322110 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+=....+|++++++...+++|+. .+||+.|+|..|-
T Consensus 115 ~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06882 115 ECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDM 165 (574)
T ss_pred ccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHHH
Confidence 468888888888889999999998887777764 3699999999873
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=87.28 E-value=7.2 Score=43.00 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=89.7
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCC-------------ChHHHHHHHHHHHHHcCCCcEEEEEcCC
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRA-------------DPIKDAEVIQEVRKKVGHRIELRVDANR 710 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~-------------~~~~d~~~v~~vr~~~g~~~~l~vDaN~ 710 (983)
.|+.+++.+..+++++.+.++.+.+.|+..|-+-++.+. +++.=.+.++++|+.+. +.+.|=-..
T Consensus 100 ~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~Pv~vKl~~ 177 (299)
T cd02940 100 KILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVK--IPVIAKLTP 177 (299)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcC--CCeEEECCC
Confidence 344555533237888898888887779999999887631 23333566778887653 333332221
Q ss_pred CCCHHHHHHHHhhcccCCCcee----------------ecCCC-------------------ChHHHHHHHhhc--CCcE
Q 041113 711 NWTYQEALEFGFLIKDCDLQYI----------------EEPVQ-------------------NEEDIIKYCEES--GLPV 753 (983)
Q Consensus 711 ~~~~~~a~~~~~~l~~~~i~~i----------------EeP~~-------------------~~~~~~~l~~~~--~ipI 753 (983)
+..+..++++.+++.+...| +.|.+ .++.+.++++.. .+||
T Consensus 178 --~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipI 255 (299)
T cd02940 178 --NITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPI 255 (299)
T ss_pred --CchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcE
Confidence 23356667777777665544 12211 145567788888 7999
Q ss_pred EeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcC-CHHHHHHH
Q 041113 754 ALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIG-GFENAGLI 797 (983)
Q Consensus 754 a~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~G-Gl~~~~~~ 797 (983)
.+.=-+.+..| ..+++..|++.+++--.... |..-..++
T Consensus 256 ig~GGI~~~~d-----a~~~l~aGA~~V~i~ta~~~~g~~~~~~i 295 (299)
T cd02940 256 SGIGGIESWED-----AAEFLLLGASVVQVCTAVMNQGFTIVDDM 295 (299)
T ss_pred EEECCCCCHHH-----HHHHHHcCCChheEceeecccCCcHHHHH
Confidence 99888887654 34444578888888766554 65544444
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=87.22 E-value=1.9 Score=52.20 Aligned_cols=105 Identities=16% Similarity=0.125 Sum_probs=74.4
Q ss_pred hHHHHHhhhhccCceEEEEEc-cchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVG-DISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~G-DGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++- --|+...+..|.+|-. .+.|+++|.-.=....+. ....+
T Consensus 57 A~~~Adgyar~tg~~~v~~~t~GpG~~n~~~gl~~A~~--~~~Pvl~i~G~~~~~~~~-----------------~~~~q 117 (561)
T PRK06048 57 AAHAADGYARATGKVGVCVATSGPGATNLVTGIATAYM--DSVPIVALTGQVPRSMIG-----------------NDAFQ 117 (561)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHHHHHhh--cCCCEEEEeccCCccccC-----------------CCCcc
Confidence 677888888887777777653 3345557899999987 899998886422211000 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
..|...+.+.+-....+|++++++...+.+|++ .+||+.|+|..|
T Consensus 118 ~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d 167 (561)
T PRK06048 118 EADITGITMPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKD 167 (561)
T ss_pred ccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence 467778888877778899999998888888764 369999999875
|
|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=87.09 E-value=2 Score=52.09 Aligned_cols=105 Identities=13% Similarity=0.095 Sum_probs=77.1
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+.+++++.+|++ |=| ....+..|.++-. .+.|+++|.-.-.....- . ...
T Consensus 64 A~~mAdgyar~tg~~gv~~~t~GpG-~~N~~~gla~A~~--~~~Pvl~I~G~~~~~~~~-------------~----~~~ 123 (570)
T PRK06725 64 AIHAAEGYARASGKVGVVFATSGPG-ATNLVTGLADAYM--DSIPLVVITGQVATPLIG-------------K----DGF 123 (570)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHHHhh--cCcCEEEEecCCCccccc-------------C----CCC
Confidence 56788888887777766654 444 5556899999987 899998888543322110 0 112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-----CCCEEEEEEcCc
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-----GTDRVIEVESCI 452 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-----~~p~lIeV~~~~ 452 (983)
+..|...+.+.+-....+|++++++...|++|+.. +||+.|++..|-
T Consensus 124 q~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 175 (570)
T PRK06725 124 QEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDV 175 (570)
T ss_pred cccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccch
Confidence 34688889999988899999999999999888742 699999998763
|
|
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=87.00 E-value=1.2 Score=48.65 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=38.3
Q ss_pred ccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHH---HHHhhC-CCEEEEEcCCCCC
Q 041113 918 SKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPI---MKAVSG-SARCISIDLPGHG 976 (983)
Q Consensus 918 ~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~---~~~l~~-~~~vi~~Dl~G~G 976 (983)
+..+.|.+++.. +.. ....|.|+|+||++++...|... ...++. .+.||.||.+++|
T Consensus 29 ~~~~~~~vy~P~-~~~-~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g 89 (283)
T PLN02442 29 GCSMTFSVYFPP-ASD-SGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRG 89 (283)
T ss_pred CCceEEEEEcCC-ccc-CCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCC
Confidence 345556555544 111 11258999999999999888553 344443 5999999998876
|
|
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.94 E-value=2.6 Score=50.78 Aligned_cols=109 Identities=12% Similarity=0.043 Sum_probs=77.5
Q ss_pred hHHHHHhhhhccCceEEEE-EccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCV-VGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i-~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+..++++.+|+ +..-|+.-.+..|..|.+ .++|+++|.-.......-+. . ..+ ..
T Consensus 51 A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi~~A~~--~~~Pvl~i~G~~~~~~~~~~-----------~-~~~--~~ 114 (535)
T PRK07524 51 AGFMADGYARVSGKPGVCFIITGPGMTNIATAMGQAYA--DSIPMLVISSVNRRASLGKG-----------R-GKL--HE 114 (535)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHHHh--cCCCEEEEeCCCChhhcCCC-----------C-ccc--cc
Confidence 6778888888877775554 444555567899999988 89999988865443211100 0 000 01
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
.+|-..+.+.+-..+.+|++++++.+.+.+|+. .+||+.|++..|-
T Consensus 115 ~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (535)
T PRK07524 115 LPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDV 165 (535)
T ss_pred cccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhH
Confidence 257888999998899999999999998888763 3699999998663
|
|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=86.77 E-value=3.3 Score=50.44 Aligned_cols=106 Identities=13% Similarity=0.105 Sum_probs=78.0
Q ss_pred hHHHHHhhhhcc-CceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGC-NKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~-~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+-++ +++.+|++ .=.|+...+..|.+|.. .+.|+++|.-.-.....- . +..
T Consensus 53 A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gla~A~~--~~~Pvl~I~G~~~~~~~~-------------~----~~~ 113 (588)
T TIGR01504 53 ASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASA--DSIPILCITGQAPRARLH-------------K----EDF 113 (588)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHHHHHhh--cCCCEEEEecCCCccccC-------------C----Ccc
Confidence 566778887777 67877764 23346667899999987 899998888544322110 0 112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
+..|...+.+.+-....+|++++++.+.|++|+. .+||+.|+|..|-
T Consensus 114 q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 165 (588)
T TIGR01504 114 QAVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDV 165 (588)
T ss_pred cccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcch
Confidence 3468888999998889999999999999988864 3589999999874
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=86.74 E-value=2.5 Score=51.35 Aligned_cols=105 Identities=15% Similarity=0.083 Sum_probs=76.2
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+.+++++.+|++ |=| +.-.+..+.++.. .+.|+++|.-.-.....- . +..
T Consensus 54 A~~mAdgyar~tg~~gv~~~t~GpG-~~n~l~gia~A~~--~~~Pvl~i~G~~~~~~~~-------------~----~~~ 113 (572)
T PRK08979 54 AVHMADGYARATGKVGVVLVTSGPG-ATNTITGIATAYM--DSIPMVVLSGQVPSNLIG-------------N----DAF 113 (572)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCch-HhHHHHHHHHHhh--cCCCEEEEecCCCccccC-------------C----CCC
Confidence 56788888877777777665 554 5557899999887 899998887533221100 0 112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
+..|...+.+.+=....+|++++++.+.|++|+. .+||+.|+|..|-
T Consensus 114 q~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (572)
T PRK08979 114 QECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC 165 (572)
T ss_pred cccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence 3468888899888889999999999888888764 3589999998763
|
|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.70 E-value=2.9 Score=50.48 Aligned_cols=106 Identities=7% Similarity=-0.023 Sum_probs=75.6
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+.+++.+|++ .--|+.-.++.+.+|.. .+.|+++|.-+-... ... .+..+
T Consensus 54 A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i~~A~~--~~~Pvl~i~g~~~~~-~~~----------------~~~~q 114 (542)
T PRK05858 54 AAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAMAAAQF--NQSPLVVLGGRAPAL-RWG----------------MGSLQ 114 (542)
T ss_pred HHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHHHHHHh--cCCCEEEEeCCCCcc-cCC----------------CCCCc
Confidence 67788898888877777764 34556667899999987 899998766322211 100 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|-..+.+.+--...+|++++++.+.+.+|+. ..||+.|++..|-
T Consensus 115 ~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 165 (542)
T PRK05858 115 EIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDH 165 (542)
T ss_pred ccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChhh
Confidence 467778888888889999999999888888763 3689999998764
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=86.57 E-value=6.7 Score=44.26 Aligned_cols=146 Identities=18% Similarity=0.195 Sum_probs=88.6
Q ss_pred HHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceee------
Q 041113 660 ASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIE------ 733 (983)
Q Consensus 660 ~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iE------ 733 (983)
.+.++.+.+.++..+ +++.-.++++++|+.. -.+++++ +...+.++++.+.+.++.+|-
T Consensus 102 a~aa~~~~e~~~~~~--------~p~l~~~ii~~vr~a~-VtvkiRl------~~~~~~e~a~~l~eAGad~I~ihgrt~ 166 (369)
T TIGR01304 102 AAATRLLQELHAAPL--------KPELLGERIAEVRDSG-VITAVRV------SPQNAREIAPIVVKAGADLLVIQGTLV 166 (369)
T ss_pred HHHHHHHHHcCCCcc--------ChHHHHHHHHHHHhcc-eEEEEec------CCcCHHHHHHHHHHCCCCEEEEeccch
Confidence 444444444555542 3444567888888863 3345555 234667778888787777665
Q ss_pred -----cCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCC----------HHHHHHHH
Q 041113 734 -----EPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGG----------FENAGLIA 798 (983)
Q Consensus 734 -----eP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GG----------l~~~~~~~ 798 (983)
-.-.++.++.++.+..++||..+. +.+.. ....+.+.|+|.|. .+..|+ +.....++
T Consensus 167 ~q~~~sg~~~p~~l~~~i~~~~IPVI~G~-V~t~e-----~A~~~~~aGaDgV~--~G~gg~~~~~~~lg~~~p~~~ai~ 238 (369)
T TIGR01304 167 SAEHVSTSGEPLNLKEFIGELDVPVIAGG-VNDYT-----TALHLMRTGAAGVI--VGPGGANTTRLVLGIEVPMATAIA 238 (369)
T ss_pred hhhccCCCCCHHHHHHHHHHCCCCEEEeC-CCCHH-----HHHHHHHcCCCEEE--ECCCCCcccccccCCCCCHHHHHH
Confidence 121257888899888999998744 55543 35555667999877 333232 22222333
Q ss_pred HHHHH-------cC---CcEEeCCCCchHHHHHHHHHHHh
Q 041113 799 RWAQR-------HG---KMAVVSAAFESGLGLSAYIIFSS 828 (983)
Q Consensus 799 ~~A~~-------~g---i~~~~~~~~es~ig~~a~~~laa 828 (983)
+.+++ .| ++++..+.+.++-..+.++.+.|
T Consensus 239 d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGA 278 (369)
T TIGR01304 239 DVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGA 278 (369)
T ss_pred HHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCC
Confidence 33322 33 88888888888877777766544
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=86.41 E-value=2.6 Score=51.02 Aligned_cols=107 Identities=10% Similarity=0.076 Sum_probs=76.4
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+-+++++-+|++ .--|+.-.++.+.+|.. .+.|+++|.-.-..... . .. .+..+
T Consensus 52 A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gia~A~~--~~~Pvl~I~G~~~~~~~-~------------~~--~~~~q 114 (554)
T TIGR03254 52 AGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTALANATT--NCFPMIMISGSSERHIV-D------------LQ--QGDYE 114 (554)
T ss_pred HHHHHHHHHHHhCCCEEEEEccCccHHhHHHHHHHHHh--cCCCEEEEEccCCcccc-c------------cC--CCCcc
Confidence 56677787777777766654 35556667899999987 89999998875442210 0 00 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
.+|...+.+.+-....+|++++++.+.|.+|+. .+||+.|++..|
T Consensus 115 ~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~D 164 (554)
T TIGR03254 115 EMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAA 164 (554)
T ss_pred hhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHH
Confidence 468888999998899999999998888887753 358899999865
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.39 E-value=5.5 Score=41.58 Aligned_cols=127 Identities=20% Similarity=0.362 Sum_probs=86.6
Q ss_pred HHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCC------CCCHH---HHHHHHhhcccCCCcee
Q 041113 662 IATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANR------NWTYQ---EALEFGFLIKDCDLQYI 732 (983)
Q Consensus 662 ~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~------~~~~~---~a~~~~~~l~~~~i~~i 732 (983)
.++++++.|..++=+ |. -.-+|.++++.+.+.+|..+.+.+|++. +|... +..+++++++++++.-|
T Consensus 89 ~v~~ll~~G~~rVii--Gt--~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~i 164 (241)
T COG0106 89 DVEALLDAGVARVII--GT--AAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHI 164 (241)
T ss_pred HHHHHHHCCCCEEEE--ec--ceecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeE
Confidence 466777889998665 43 2357888999999999999999999987 57432 46677777777654321
Q ss_pred -------ecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceE-EEEcCCCcCCH--HHHHHH
Q 041113 733 -------EEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVA-IVIKPSVIGGF--ENAGLI 797 (983)
Q Consensus 733 -------EeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~-i~~k~~~~GGl--~~~~~~ 797 (983)
|-=+. |.+-+++|.+.+.+|+-.-=-+.+..| ++.+.+. |+.. ++=+.-..|.+ .++++.
T Consensus 165 i~TdI~~DGtl~G~n~~l~~~l~~~~~ipviaSGGv~s~~D-----i~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~~ 237 (241)
T COG0106 165 LYTDISRDGTLSGPNVDLVKELAEAVDIPVIASGGVSSLDD-----IKALKELSGVEGVIVGRALYEGKFTLEEALAC 237 (241)
T ss_pred EEEecccccccCCCCHHHHHHHHHHhCcCEEEecCcCCHHH-----HHHHHhcCCCcEEEEehHHhcCCCCHHHHHHH
Confidence 22233 678889999999999877766777654 4444444 6644 44566666665 444433
|
|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=86.29 E-value=2.1 Score=52.18 Aligned_cols=106 Identities=13% Similarity=0.059 Sum_probs=76.7
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+..++++.+|++ ---|+.-.++.+.+|.. .+.|+++|.-.-......+ ...+
T Consensus 61 A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gia~A~~--~~~Pvl~i~G~~~~~~~~~-----------------~~~q 121 (595)
T PRK09107 61 AGHAAEGYARSTGKPGVVLVTSGPGATNAVTPLQDALM--DSIPLVCITGQVPTHLIGS-----------------DAFQ 121 (595)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCccHhHHHHHHHHHhh--cCCCEEEEEcCCChhhcCC-----------------CCCc
Confidence 56677888777776666654 34455557899999987 8999988886443221110 1123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-----CCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-----GTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-----~~p~lIeV~~~~ 452 (983)
.+|-..+.+.+--...+|++++++...+.+|++. +||+.|+|..|-
T Consensus 122 ~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 172 (595)
T PRK09107 122 ECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV 172 (595)
T ss_pred ccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCCh
Confidence 4688888888877889999999999888887652 699999998774
|
|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=86.25 E-value=2.2 Score=51.56 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=74.8
Q ss_pred hHHHHHhhhhccCceEEEEEcc-chhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGD-ISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GD-Gsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+.+++++.+|++-= -|+...+..+.+|.. .+.|+++|.-.-.....-+ +..+
T Consensus 50 A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l~~A~~--~~~Pvl~i~g~~~~~~~~~-----------------~~~q 110 (548)
T PRK08978 50 AAMAAIGYARATGKVGVCIATSGPGATNLITGLADALL--DSVPVVAITGQVSSPLIGT-----------------DAFQ 110 (548)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHhh--cCCCEEEEecCCCccccCC-----------------CCCc
Confidence 6678888888888888877632 234446789999987 8999988875433221110 0123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
.+|-..+.+.+=....+|++++++...+++|++ .+||+.|||..|-
T Consensus 111 ~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (548)
T PRK08978 111 EIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDI 161 (548)
T ss_pred ccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChhh
Confidence 456677777776778899999998888888764 3589999998763
|
|
| >PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function | Back alignment and domain information |
|---|
Probab=86.22 E-value=1.7 Score=35.48 Aligned_cols=19 Identities=26% Similarity=0.823 Sum_probs=11.5
Q ss_pred CCceEEEeCCCCCChhhHH
Q 041113 937 QDNILLFLHGFLGTGEEWI 955 (983)
Q Consensus 937 ~~~~lv~lHG~~~~~~~w~ 955 (983)
.+|||+|.||+.+|+..|-
T Consensus 42 ~k~pVll~HGL~~ss~~wv 60 (63)
T PF04083_consen 42 KKPPVLLQHGLLQSSDDWV 60 (63)
T ss_dssp T--EEEEE--TT--GGGGC
T ss_pred CCCcEEEECCcccChHHHH
Confidence 4799999999999999993
|
The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B. |
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=86.14 E-value=2.3 Score=51.60 Aligned_cols=105 Identities=12% Similarity=0.070 Sum_probs=73.7
Q ss_pred hHHHHHhhhhccCceEEEEEc-cchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVG-DISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~G-DGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++. =-|+.-.+..|.+|.. .+.|+++|.-.-......+ ...+
T Consensus 63 A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl~~A~~--~~~Pvl~i~G~~~~~~~~~-----------------~~~q 123 (564)
T PRK08155 63 AGFIAQGMARTTGKPAVCMACSGPGATNLVTAIADARL--DSIPLVCITGQVPASMIGT-----------------DAFQ 123 (564)
T ss_pred HHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHHHHHHh--cCCCEEEEeccCCcccccC-----------------CCcc
Confidence 567788888887888777652 3334446889999887 8999988875333221100 1123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
.+|...+.+.+-....++++++++...+++|+. .+||+.|||..|
T Consensus 124 ~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 124 EVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred ccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 467777888877788899999998888887763 259999999865
|
|
| >PRK05333 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=86.09 E-value=1.5 Score=48.02 Aligned_cols=67 Identities=13% Similarity=0.080 Sum_probs=48.9
Q ss_pred cccCCCCEEEEeCCccccHHHHHHHH--hcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccC
Q 041113 156 KDWIQFDVIIQIGSRITSKRISQMIE--ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQV 224 (983)
Q Consensus 156 ~~~~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~ 224 (983)
..+.++|++|+||+++.-.....+.. ...+.++|.|+.++...+.. .++.|.+|+.++|..|.+.+.
T Consensus 210 ~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~--~~~~i~g~~~evL~~l~~~l~ 278 (285)
T PRK05333 210 AALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPL--LTLKVEASCAQALAALVARLG 278 (285)
T ss_pred HHHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcc--eeEEEeCCHHHHHHHHHHHhC
Confidence 35678999999999986544333322 12344788899988766543 488999999999999987664
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=86.06 E-value=9.6 Score=41.38 Aligned_cols=134 Identities=16% Similarity=0.196 Sum_probs=84.8
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc--------------C-CCcEEEEEc
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV--------------G-HRIELRVDA 708 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~--------------g-~~~~l~vDa 708 (983)
||+.-.++-+.+.+ .+.++++.||+.+-+.-.. .+.++.++..+++.+.. | .+-.+-.+.
T Consensus 75 VPValHLDHg~~~e----~i~~ai~~GFtSVM~DgS~-lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~ 149 (286)
T PRK12738 75 MPLALHLDHHESLD----DIRRKVHAGVRSAMIDGSH-FPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDA 149 (286)
T ss_pred CCEEEECCCCCCHH----HHHHHHHcCCCeEeecCCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCccccc
Confidence 45544454444554 4555667899999998654 46778887777765532 1 110111122
Q ss_pred CC-CC-CHHHHHHHHhhccc----------CCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 709 NR-NW-TYQEALEFGFLIKD----------CDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 709 N~-~~-~~~~a~~~~~~l~~----------~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
+. -| ++++|.+|.++..- +|. |-..|--+++-++++++.+++|+.+.=.-.... +.++..++.
T Consensus 150 ~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~-Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~----e~~~kai~~ 224 (286)
T PRK12738 150 ESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGL-YSKTPKIDFQRLAEIREVVDVPLVLHGASDVPD----EFVRRTIEL 224 (286)
T ss_pred chhcCCCHHHHHHHHHHhCCCEEEeccCcccCC-CCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCH----HHHHHHHHc
Confidence 11 25 89999999875421 122 334554479999999999999998876544433 368888888
Q ss_pred CceEEEEcCCC
Q 041113 777 GIVAIVIKPSV 787 (983)
Q Consensus 777 ~~~~i~~k~~~ 787 (983)
|+.=||+....
T Consensus 225 GI~KiNi~T~l 235 (286)
T PRK12738 225 GVTKVNVATEL 235 (286)
T ss_pred CCeEEEeCcHH
Confidence 87667876544
|
|
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=86.03 E-value=2.8 Score=50.97 Aligned_cols=106 Identities=13% Similarity=0.099 Sum_probs=77.1
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++-+|++ ---|+.-.+..+.+|.. .+.|+++|.-.=.....- ....+
T Consensus 54 A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi~~A~~--~~~Pvl~i~G~~~~~~~~-----------------~~~~q 114 (574)
T PRK07979 54 AVHMADGLARATGEVGVVLVTSGPGATNAITGIATAYM--DSIPLVVLSGQVATSLIG-----------------YDAFQ 114 (574)
T ss_pred HHHHHHHHHHHhCCceEEEECCCccHhhhHHHHHHHhh--cCCCEEEEECCCChhccC-----------------CCCCc
Confidence 56788888887776766655 23345557899999987 899998887543322110 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+=....+|++++++...|++|+. .+||+.|++..|-
T Consensus 115 ~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 115 ECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI 165 (574)
T ss_pred eecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 468888999988889999999999999988874 3699999998764
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.02 E-value=8.4 Score=43.58 Aligned_cols=133 Identities=14% Similarity=0.176 Sum_probs=82.5
Q ss_pred ChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeec-----C------CCChHHHHHHHhhcCC
Q 041113 683 DPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEE-----P------VQNEEDIIKYCEESGL 751 (983)
Q Consensus 683 ~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEe-----P------~~~~~~~~~l~~~~~i 751 (983)
+++.-.++|+++++. + +.+.+-. +..++.++++.+.+.++.+|.= + -.++.++.++.++.++
T Consensus 116 ~p~l~~~iv~~~~~~-~--V~v~vr~----~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~i 188 (368)
T PRK08649 116 KPELITERIAEIRDA-G--VIVAVSL----SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDV 188 (368)
T ss_pred CHHHHHHHHHHHHhC-e--EEEEEec----CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCC
Confidence 555567888999885 3 4443332 3455677888888888888773 1 1147778888888899
Q ss_pred cEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCC---------cC-CHHHH---HHHHHHHHHc-------CCcEEeC
Q 041113 752 PVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSV---------IG-GFENA---GLIARWAQRH-------GKMAVVS 811 (983)
Q Consensus 752 pIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~---------~G-Gl~~~---~~~~~~A~~~-------gi~~~~~ 811 (983)
||..+. +.+.. ....+.+.|+|.|.+-..- .| |+... .+.++.++++ +++++..
T Consensus 189 pVIaG~-V~t~e-----~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAd 262 (368)
T PRK08649 189 PVIVGG-CVTYT-----TALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIAD 262 (368)
T ss_pred CEEEeC-CCCHH-----HHHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEe
Confidence 998844 55543 3555667899997553211 11 22222 2333333333 6898888
Q ss_pred CCCchHHHHHHHHHHHh
Q 041113 812 AAFESGLGLSAYIIFSS 828 (983)
Q Consensus 812 ~~~es~ig~~a~~~laa 828 (983)
+.+.++-..+.++.+.|
T Consensus 263 GGI~~~~diakAlalGA 279 (368)
T PRK08649 263 GGIGTSGDIAKAIACGA 279 (368)
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 88877777776665544
|
|
| >COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.76 E-value=2.7 Score=45.94 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=73.0
Q ss_pred EEEEcc-CCCh-hHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCCCEEEEe
Q 041113 90 LLLVGA-VHNE-DEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQI 167 (983)
Q Consensus 90 vIl~G~-g~~~-~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~aDlvl~i 167 (983)
+|+.|+ |..+ +..+.+.+||+.||+-|-.+-. -+ -.|.+|.+|- +|..|. .-.+||-|++
T Consensus 197 iVVsgGRG~gs~enf~~i~~LA~~LGa~VGaSRp-~v----d~gw~p~d~Q----VGqTGk---------~V~P~LYIA~ 258 (313)
T COG2025 197 IVVSGGRGLGSKENFKLLEELADVLGAAVGASRP-AV----DAGWMPNDRQ----VGQTGK---------TVAPKLYIAL 258 (313)
T ss_pred EEEEcCcccCChhhhHHHHHHHHHhCceeeccHH-HH----hcCCCCccce----ecCCCc---------EecccEEEEE
Confidence 555555 4443 3345789999999999966442 11 1366666653 454442 2368999999
Q ss_pred CCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccC
Q 041113 168 GSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQV 224 (983)
Q Consensus 168 G~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~ 224 (983)
|-+=--.++.+. ...+.+|-|+.|++.- -+..+|..|++|...++.+|.+.+.
T Consensus 259 GISGAiQHlaGm---~~Sk~IVAINkD~nAP-IF~~ADyGiVgDl~~ivP~Lie~l~ 311 (313)
T COG2025 259 GISGAIQHLAGM---KDSKVIVAINKDPNAP-IFQVADYGIVGDLFKIVPALIEALK 311 (313)
T ss_pred ecccHHHHHhhc---ccCcEEEEEcCCCCCC-ccccCCeeeeeeHHHHHHHHHHHHh
Confidence 976322222221 1124578899988643 2456899999999999999998764
|
|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=85.70 E-value=3.1 Score=50.98 Aligned_cols=106 Identities=14% Similarity=0.138 Sum_probs=75.2
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+...+++.+|++ .--|+...++.|.+|.. .+.|+++|.-+=....+-+ ...+
T Consensus 72 Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl~~A~~--d~~Pvl~i~G~~~~~~~~~-----------------~~~Q 132 (616)
T PRK07418 72 AAHAADGYARATGKVGVCFGTSGPGATNLVTGIATAQM--DSVPMVVITGQVPRPAIGT-----------------DAFQ 132 (616)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHHHh--cCCCEEEEecCCCccccCC-----------------CCcc
Confidence 56778888777777877765 23345557899999987 8999988886433211100 0113
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|-..+.+.+--...+|++++++...+.+|+. .+||+.|++..|-
T Consensus 133 e~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv 183 (616)
T PRK07418 133 ETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDV 183 (616)
T ss_pred cccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhh
Confidence 467777888877778899999999888888764 2599999998663
|
|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=85.59 E-value=2.9 Score=50.90 Aligned_cols=104 Identities=14% Similarity=0.029 Sum_probs=74.0
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+.+++++.+|++ |=|+.. .+..|.+|.. .++|+++|.-.=..... .....
T Consensus 61 A~~~Adgyar~tg~~gv~~~t~GpG~~N-~~~gl~~A~~--~~~Pvl~I~G~~~~~~~-----------------~~~~~ 120 (578)
T PRK06112 61 GGAMADGYARVSGKVAVVTAQNGPAATL-LVAPLAEALK--ASVPIVALVQDVNRDQT-----------------DRNAF 120 (578)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCcHHH-HHHHHHHHhh--cCCCEEEEecCCccccC-----------------CCCCc
Confidence 55677788887788888877 554443 3688888887 89999888854221100 00112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
+..|-..+.+.+-....+|++++++...+++|+. .+||+.|+|..|
T Consensus 121 Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 121 QELDHIALFQSCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred cccChhhhhccccceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 3467788888888888999999988887777653 258999999876
|
|
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=85.52 E-value=9.4 Score=41.39 Aligned_cols=134 Identities=17% Similarity=0.189 Sum_probs=86.4
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc---CC------------CcEEEEEc
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV---GH------------RIELRVDA 708 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~---g~------------~~~l~vDa 708 (983)
||+.-.++-+.+.+ .+.+.++.||+.+-+.-.. .+.++.++..+++.+.. |- +-.+..+.
T Consensus 73 VPValHLDHg~~~e----~i~~ai~~GFtSVM~DgS~-lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~ 147 (282)
T TIGR01858 73 MPLALHLDHHESLD----DIRQKVHAGVRSAMIDGSH-FPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDE 147 (282)
T ss_pred CCEEEECCCCCCHH----HHHHHHHcCCCEEeecCCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCcccc
Confidence 45544444444544 4666778899999998655 46788888777776532 11 11111122
Q ss_pred CC-CC-CHHHHHHHHhhccc----------CCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 709 NR-NW-TYQEALEFGFLIKD----------CDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 709 N~-~~-~~~~a~~~~~~l~~----------~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
+. .| ++++|.+|.++..- +|+ |-.+|--+++-++++++.+++|+.+.=.-.... +++++.+..
T Consensus 148 ~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~-yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~----e~~~~ai~~ 222 (282)
T TIGR01858 148 EDALYTDPQEAKEFVEATGVDSLAVAIGTAHGL-YKKTPKLDFDRLAEIREVVDVPLVLHGASDVPD----EDVRRTIEL 222 (282)
T ss_pred chhccCCHHHHHHHHHHHCcCEEecccCccccC-cCCCCccCHHHHHHHHHHhCCCeEEecCCCCCH----HHHHHHHHc
Confidence 22 25 78999999875421 222 445664479999999999999998876544433 468888888
Q ss_pred CceEEEEcCCC
Q 041113 777 GIVAIVIKPSV 787 (983)
Q Consensus 777 ~~~~i~~k~~~ 787 (983)
|+.=||+....
T Consensus 223 Gi~KiNi~T~l 233 (282)
T TIGR01858 223 GICKVNVATEL 233 (282)
T ss_pred CCeEEEeCcHH
Confidence 88777877654
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins | Back alignment and domain information |
|---|
Probab=85.38 E-value=3.4 Score=40.74 Aligned_cols=102 Identities=8% Similarity=-0.005 Sum_probs=66.7
Q ss_pred hHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHN 407 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (983)
+..+|-|++.+.. +|++++.=-++...+..|.++.. .+.|+++|+-+-...+.-.. . .....
T Consensus 53 A~~~A~g~~r~~~-~v~~~~~gpG~~n~~~~l~~a~~--~~~P~v~i~g~~~~~~~~~~------------~---~~~~~ 114 (160)
T cd07034 53 AAEAAIGASAAGA-RAMTATSGPGLNLMAEALYLAAG--AELPLVIVVAQRPGPSTGLP------------K---PDQSD 114 (160)
T ss_pred HHHHHHHHHhhCC-cEEEeeCcchHHHHHHHHHHHHh--CCCCEEEEEeeCCCCCCCCC------------C---cCcHH
Confidence 6777888877643 46555555566678899999987 78999999877554322100 0 00012
Q ss_pred CCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc----cCCCEEEEE
Q 041113 408 ISIQNLCLAHGLNHVQVKTKVELEEALSMSQH----LGTDRVIEV 448 (983)
Q Consensus 408 ~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~----~~~p~lIeV 448 (983)
+|...+.+. .....++++++|+.+.+++|+. .++|++|-+
T Consensus 115 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 115 LMAARYGGH-PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred HHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 344445544 4667789999998888887753 357888754
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th |
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=85.32 E-value=3.3 Score=50.19 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=74.3
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|.|.+.+++++.+|++ |=| +...+..|.+|-. .+.|+++|.-.=.....- ....
T Consensus 58 A~~~Adgyar~tg~~gv~~~t~GpG-~~N~~~gi~~A~~--~~~Pvl~i~g~~~~~~~~-----------------~~~~ 117 (557)
T PRK08199 58 AAMMAEAYGKLTGRPGICFVTRGPG-ATNASIGVHTAFQ--DSTPMILFVGQVARDFRE-----------------REAF 117 (557)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcc-HHHHHHHHHHHhh--cCCCEEEEecCCccccCC-----------------CCcc
Confidence 66788888888778888876 444 4446789999987 899998887432211000 0112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
+..|...+.+.+=-...+|++++++...+.+|+. .+||+.|++..|
T Consensus 118 q~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~d 168 (557)
T PRK08199 118 QEIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSGRPGPVVLALPED 168 (557)
T ss_pred cccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 3467778888877788899999998888888764 258999999865
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=85.30 E-value=7.1 Score=41.88 Aligned_cols=136 Identities=15% Similarity=0.233 Sum_probs=84.9
Q ss_pred HHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcC-CCcEEEEEcCC------------CCC---HHHHHHHHhhccc
Q 041113 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVG-HRIELRVDANR------------NWT---YQEALEFGFLIKD 726 (983)
Q Consensus 663 ~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g-~~~~l~vDaN~------------~~~---~~~a~~~~~~l~~ 726 (983)
++++.+.|...+ -+|. ..-.+.+.+.++.+.+| ..+.+.+|... +|. .....++++.+++
T Consensus 89 ~~~~l~~Ga~~V--iigt--~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
T PRK02083 89 ARRLLRAGADKV--SINS--AAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEE 164 (253)
T ss_pred HHHHHHcCCCEE--EECh--hHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHH
Confidence 444455676664 4564 34457788999999997 45777889643 131 1134555566666
Q ss_pred CCCce-----ee-cCCC---ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCC-CcCCHHHHH
Q 041113 727 CDLQY-----IE-EPVQ---NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPS-VIGGFENAG 795 (983)
Q Consensus 727 ~~i~~-----iE-eP~~---~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~-~~GGl~~~~ 795 (983)
.++.. +. +... +++-++++++.+++||.+.=-+.+..| +..+.+ .|++.+.+--. ..|. ....
T Consensus 165 ~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d-----~~~~~~~~G~~gvivg~al~~~~-~~~~ 238 (253)
T PRK02083 165 LGAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEH-----FVEAFTEGGADAALAASIFHFGE-ITIG 238 (253)
T ss_pred cCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHH-----HHHHHHhCCccEEeEhHHHHcCC-CCHH
Confidence 66532 22 2332 577788998888999877766666543 444554 48877665333 3343 4466
Q ss_pred HHHHHHHHcCCcE
Q 041113 796 LIARWAQRHGKMA 808 (983)
Q Consensus 796 ~~~~~A~~~gi~~ 808 (983)
++.+.+++.|+.+
T Consensus 239 ~~~~~~~~~~~~~ 251 (253)
T PRK02083 239 ELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHCCCcc
Confidence 7778888888873
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=85.17 E-value=15 Score=40.14 Aligned_cols=113 Identities=14% Similarity=0.213 Sum_probs=82.0
Q ss_pred eeEEEEeec-CCCCHHHHHHHHHHhhhcCCCEEEEe-------ccCC-----CChHHHHHHHHHHHHHc-CCCcEE--EE
Q 041113 643 SIKICALID-SNKSPVEVASIATTLVEEGFTAIKLK-------VARR-----ADPIKDAEVIQEVRKKV-GHRIEL--RV 706 (983)
Q Consensus 643 ~i~~~~~~~-~~~~~~~~~~~~~~~~~~G~~~~KiK-------ig~~-----~~~~~d~~~v~~vr~~~-g~~~~l--~v 706 (983)
.+|+.+-.. +.+++..+.+.++++.+.|...+-|. .|.. -+.++=+++|++++++- ++++-| |.
T Consensus 78 ~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART 157 (292)
T PRK11320 78 DLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART 157 (292)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEec
Confidence 466655442 23488999999999999999888772 2321 13445578888888775 455554 45
Q ss_pred EcCCCCCHHHHHHHHhhcccC--CCceeecCCCChHHHHHHHhhcCCcEEeC
Q 041113 707 DANRNWTYQEALEFGFLIKDC--DLQYIEEPVQNEEDIIKYCEESGLPVALD 756 (983)
Q Consensus 707 DaN~~~~~~~a~~~~~~l~~~--~i~~iEeP~~~~~~~~~l~~~~~ipIa~d 756 (983)
|+-.....++|++.++...+. +..|+|-|-. .++++++.++.++|+...
T Consensus 158 Da~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~~-~~~i~~~~~~~~~Pl~~n 208 (292)
T PRK11320 158 DALAVEGLDAAIERAQAYVEAGADMIFPEAMTE-LEMYRRFADAVKVPILAN 208 (292)
T ss_pred CcccccCHHHHHHHHHHHHHcCCCEEEecCCCC-HHHHHHHHHhcCCCEEEE
Confidence 887666799999999988775 5779988665 999999999988898553
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=85.17 E-value=12 Score=38.14 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhhhcCCCEEEEeccC--CCC--hHHHHHHHHHHHHHcCCCcEEEEEcCCCC--CHHHHHHHHhhcccCCC
Q 041113 656 PVEVASIATTLVEEGFTAIKLKVAR--RAD--PIKDAEVIQEVRKKVGHRIELRVDANRNW--TYQEALEFGFLIKDCDL 729 (983)
Q Consensus 656 ~~~~~~~~~~~~~~G~~~~KiKig~--~~~--~~~d~~~v~~vr~~~g~~~~l~vDaN~~~--~~~~a~~~~~~l~~~~i 729 (983)
.++..+.++++.+.|...+.+-... ..+ .+.=.+.++++++..+.++.+++..+-.+ +.++..+.++.++..++
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~ 143 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGA 143 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 6788889999999999999986432 011 23446778888887644688888776443 67777777776777788
Q ss_pred ceeecCCC------ChHHHHHHHhhc--CCcE
Q 041113 730 QYIEEPVQ------NEEDIIKYCEES--GLPV 753 (983)
Q Consensus 730 ~~iEeP~~------~~~~~~~l~~~~--~ipI 753 (983)
.++-.... +.+.++++++.. ++|+
T Consensus 144 ~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v 175 (201)
T cd00945 144 DFIKTSTGFGGGGATVEDVKLMKEAVGGRVGV 175 (201)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhcccCCcE
Confidence 88877665 677778887665 4455
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins | Back alignment and domain information |
|---|
Probab=84.87 E-value=6 Score=38.96 Aligned_cols=101 Identities=16% Similarity=0.102 Sum_probs=63.0
Q ss_pred hHHHHHhhhhccCceEEEEEccchhh-hccchHH-HHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDISFL-HDTNGLA-ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDGsf~-~~~~eL~-Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
-++.|.|.++.--++++... ..|. .....|- .++. .++|++++ +..+|++.-.. -.+.
T Consensus 51 ~vg~A~GlA~~G~~pi~~~~--~~f~~ra~dqi~~~~a~--~~~pv~~~-~~~~g~~~~~~---------------G~tH 110 (156)
T cd07033 51 MVGIAAGLALHGLKPFVSTF--SFFLQRAYDQIRHDVAL--QNLPVKFV-GTHAGISVGED---------------GPTH 110 (156)
T ss_pred HHHHHHHHHHCCCeEEEEEC--HHHHHHHHHHHHHHHhc--cCCCeEEE-EECCcEecCCC---------------Cccc
Confidence 46777787765445565555 3443 3445565 4454 78998664 44554433100 0112
Q ss_pred CCCCHHHHHHHc-CCceeeeCCHHHHHHHHHhhhccCCCEEEEE
Q 041113 406 HNISIQNLCLAH-GLNHVQVKTKVELEEALSMSQHLGTDRVIEV 448 (983)
Q Consensus 406 ~~~df~~la~a~-G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV 448 (983)
+.++...+-+.+ |++-....+.+|++..++.+++.++|++|-.
T Consensus 111 ~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 111 QGIEDIALLRAIPNMTVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred chHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 233444444444 6777888999999999999998889998864
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included |
| >PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.83 E-value=1.8 Score=49.03 Aligned_cols=141 Identities=17% Similarity=0.158 Sum_probs=73.3
Q ss_pred hhhHHHHHHHHhcCCceEEEEccCCC-hhHHHHHHHHHHhc---CCcE--EeccccCccchhhhhhhhhhcccccc--cc
Q 041113 73 YCQMAEVLELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHI---RWPV--VADILSGLRLRKLLASFLETEQNILF--LD 144 (983)
Q Consensus 73 ~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l---~~Pv--~~t~~sg~~~~~~kg~~~~~hp~~~~--~g 144 (983)
+...++++++|..|+|.+|+-|+|.. .++..++++|++.| |+-| .-.|-+ |-.|. |=+.+. .+
T Consensus 293 ~~~~~d~a~~l~~A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPVA--------GRMPG-HMNVLLAEA~ 363 (462)
T PRK09444 293 ETTAEEVAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVA--------GRLPG-HMNVLLAEAK 363 (462)
T ss_pred ecCHHHHHHHHHhCCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccc--------ccCCC-cceeEEeecC
Confidence 34677889999999999999999854 44555666666554 4433 111211 22221 100000 00
Q ss_pred -chhh-hccCccccccCCCCEEEEeCCccccHHHHHHH-----------HhcCCceEEEEcCCCC--C--C-CC--CCCe
Q 041113 145 -HLDH-ALLSESVKDWIQFDVIIQIGSRITSKRISQMI-----------EECFPCTYILVDNHPC--R--H-DP--SHSV 204 (983)
Q Consensus 145 -~~g~-~~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~-----------~~~~~~~~i~id~d~~--~--~-~~--~~~~ 204 (983)
-|+. .-.++.|..+.+.|++|++|..-.-.+..... +-++.+++|.+..+-. . + ++ +.+.
T Consensus 364 VPYd~v~eMdeIN~~F~~tDvalVIGANDvVNPaA~~dp~SpIyGMPvL~v~kAk~Viv~KRs~~~GyAGv~NpLF~~~n 443 (462)
T PRK09444 364 VPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKEN 443 (462)
T ss_pred CCHHHHHhHHhhccccccCCEEEEecCccCCCcccccCCCCCcCCCceeehhhCCEEEEEeCCCCCCcCCCCCcceecCC
Confidence 0111 11234555678999999999864322211100 0111233444432211 0 0 01 2234
Q ss_pred eEEEEcCHHHHHHHHHhc
Q 041113 205 THRIQSTIVQFVDFLLKV 222 (983)
Q Consensus 205 ~~~i~~d~~~~l~~L~~~ 222 (983)
+.-+.+|++..+++|...
T Consensus 444 t~MlfGDAK~~~~~l~~~ 461 (462)
T PRK09444 444 TQMLFGDAKASVDAILKA 461 (462)
T ss_pred ceEEeccHHHHHHHHHHh
Confidence 556789999999998653
|
|
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.82 E-value=11 Score=41.46 Aligned_cols=148 Identities=14% Similarity=0.220 Sum_probs=97.3
Q ss_pred CCCCHHHHHHHHHHhhhcCCCEEEEeccCCC--------------ChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHH
Q 041113 652 SNKSPVEVASIATTLVEEGFTAIKLKVARRA--------------DPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEA 717 (983)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~--------------~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a 717 (983)
...+++.+++.++-....+ ..|-+-.|.+. +++---+.|.++|..++..+.+-+=-+ =+.++.
T Consensus 81 ~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~--~d~~kT 157 (358)
T KOG2335|consen 81 GGNDPENLLKAARLVQPYC-DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIF--VDLEKT 157 (358)
T ss_pred cCCCHHHHHHHHHHhhhhc-CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEec--CcHHHH
Confidence 4568888888777665667 88888888641 233334678888888865543332222 467888
Q ss_pred HHHHhhcccCCCcee---------e---cCCCChHHHHHHHhhcC-CcEEeCCCccCcCCChHHHHHhhcCCCceEEEE-
Q 041113 718 LEFGFLIKDCDLQYI---------E---EPVQNEEDIIKYCEESG-LPVALDETIDKFQKDPLNMLEKYAHPGIVAIVI- 783 (983)
Q Consensus 718 ~~~~~~l~~~~i~~i---------E---eP~~~~~~~~~l~~~~~-ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~- 783 (983)
+++++.+++.+..|| + -|..|++.++.+++..+ +|+.+.=++.++.| ...-+...|+|.|..
T Consensus 158 vd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d----~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 158 VDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLED----VERCLKYTGADGVMSA 233 (358)
T ss_pred HHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHH----HHHHHHHhCCceEEec
Confidence 899999999887766 2 22226999999999988 99999999998865 122223356666543
Q ss_pred -----cCCCc----CC---HHHHHHHHHHHHHcCC
Q 041113 784 -----KPSVI----GG---FENAGLIARWAQRHGK 806 (983)
Q Consensus 784 -----k~~~~----GG---l~~~~~~~~~A~~~gi 806 (983)
.|..+ ++ ..-..+...+|.+++-
T Consensus 234 rglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g 268 (358)
T KOG2335|consen 234 RGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFGG 268 (358)
T ss_pred chhhcCchhhccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 22222 12 2234566777888874
|
|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=84.74 E-value=3.3 Score=50.78 Aligned_cols=106 Identities=10% Similarity=0.107 Sum_probs=76.2
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ .--|+...+..|..|.. .++|+++|.-.-....+-+ ...+
T Consensus 81 A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~~A~~--~~~PllvI~G~~~~~~~~~-----------------~~~q 141 (612)
T PRK07789 81 AGHAAEGYAQATGRVGVCMATSGPGATNLVTPIADANM--DSVPVVAITGQVGRGLIGT-----------------DAFQ 141 (612)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHhh--cCCCEEEEecCCCccccCC-----------------CcCc
Confidence 67788888888777766654 33344446789999987 7999988886433221110 1123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-....+|++++++...+++|+. ..||+.|++..|-
T Consensus 142 ~~d~~~l~~~~tk~s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 192 (612)
T PRK07789 142 EADIVGITMPITKHNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDA 192 (612)
T ss_pred ccchhhhhhcceeEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccch
Confidence 468888888888888999999998888888764 2589999998773
|
|
| >PTZ00408 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=84.10 E-value=2.5 Score=44.83 Aligned_cols=64 Identities=8% Similarity=0.076 Sum_probs=45.7
Q ss_pred ccCCCCEEEEeCCccccHHHHHHHH--hcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhc
Q 041113 157 DWIQFDVIIQIGSRITSKRISQMIE--ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKV 222 (983)
Q Consensus 157 ~~~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~ 222 (983)
.+.+||++|+||+++.-........ .....+++.|+.++...+. ..+..+.+++..++.+|.+.
T Consensus 169 ~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~--~~~~~i~g~~~~~l~~l~~~ 234 (242)
T PTZ00408 169 VMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYS--QFDESIYGKASVIVPAWVDR 234 (242)
T ss_pred HHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCc--cCCEEEECCHHHHHHHHHHH
Confidence 4678999999999986555444332 2223467889998866553 34677889999999988654
|
|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=83.75 E-value=4.3 Score=49.56 Aligned_cols=105 Identities=13% Similarity=0.127 Sum_probs=77.0
Q ss_pred hHHHHHhhhhcc-CceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccccccccc
Q 041113 328 LLSTAIGFAVGC-NKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYT 404 (983)
Q Consensus 328 ~lpaaiGaalA~-~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~ 404 (983)
+.-+|-|.+.++ +++.+|++ |=|... .+..+.+|.. .+.|+++|.-.-.....-+ ..
T Consensus 54 A~~mAdGYar~t~g~~gv~~~t~GPG~~N-~l~gl~~A~~--~~~Pvl~I~G~~~~~~~~~-----------------~~ 113 (591)
T PRK11269 54 ASHMAEGYTRATAGNIGVCIGTSGPAGTD-MITGLYSASA--DSIPILCITGQAPRARLHK-----------------ED 113 (591)
T ss_pred HHHHHHHHHHHcCCCcEEEEECCCCcHHH-HHHHHHHHhh--cCCCEEEEecCCCccccCC-----------------Cc
Confidence 667888988888 78888876 444443 5788998887 8999988876543321110 11
Q ss_pred CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 405 THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 405 ~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
.+.+|...+.+.+=....+|++++++...+++|++ .+||+.|++..|-
T Consensus 114 ~q~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 166 (591)
T PRK11269 114 FQAVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDV 166 (591)
T ss_pred ccccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChhh
Confidence 23468888888888888999999999888888764 2589999999773
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=83.58 E-value=23 Score=38.56 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=81.0
Q ss_pred eeEEEEeec-CCCCHHHHHHHHHHhhhcCCCEEEEe-------ccCC-----CChHHHHHHHHHHHHHcC-CCcEE--EE
Q 041113 643 SIKICALID-SNKSPVEVASIATTLVEEGFTAIKLK-------VARR-----ADPIKDAEVIQEVRKKVG-HRIEL--RV 706 (983)
Q Consensus 643 ~i~~~~~~~-~~~~~~~~~~~~~~~~~~G~~~~KiK-------ig~~-----~~~~~d~~~v~~vr~~~g-~~~~l--~v 706 (983)
.+|+.+-.. +.+.+..+.+.++++.+.|...+-|. .|.. -+.++=+++|++++++.. +++-| |.
T Consensus 73 ~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART 152 (285)
T TIGR02317 73 DLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIART 152 (285)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEc
Confidence 456654432 23468899999999999999888773 2221 134455788999988753 34433 46
Q ss_pred EcCCCCCHHHHHHHHhhcccC--CCceeecCCCChHHHHHHHhhcCCcEEe
Q 041113 707 DANRNWTYQEALEFGFLIKDC--DLQYIEEPVQNEEDIIKYCEESGLPVAL 755 (983)
Q Consensus 707 DaN~~~~~~~a~~~~~~l~~~--~i~~iEeP~~~~~~~~~l~~~~~ipIa~ 755 (983)
|+-.....++|++.++...+. +..|+|-|.. .++++++.++.++|+..
T Consensus 153 Da~~~~g~deAI~Ra~ay~~AGAD~vfi~g~~~-~e~i~~~~~~i~~Pl~~ 202 (285)
T TIGR02317 153 DARAVEGLDAAIERAKAYVEAGADMIFPEALTS-LEEFRQFAKAVKVPLLA 202 (285)
T ss_pred CcccccCHHHHHHHHHHHHHcCCCEEEeCCCCC-HHHHHHHHHhcCCCEEE
Confidence 888777899999999888765 5779988765 99999999998888844
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=83.57 E-value=3.8 Score=49.90 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=75.5
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+.+++++.+|++ |=|... .+..+.+|-. .+.|+++|.-.-....+-+ ...
T Consensus 63 A~~~Adgyar~tg~~gv~~~t~GPG~~N-~l~gia~A~~--~~~Pvl~I~G~~~~~~~~~-----------------~~~ 122 (585)
T PLN02470 63 EVFAAEGYAKASGKVGVCIATSGPGATN-LVTGLADALL--DSVPLVAITGQVPRRMIGT-----------------DAF 122 (585)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCccHHH-HHHHHHHHHh--cCCcEEEEecCCChhhcCC-----------------CcC
Confidence 56678888877777777755 444444 5789999887 8999988875443221110 112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
+..|...+.+.+-....+|++++++.+.+++|+. .+||+.||+..|
T Consensus 123 q~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 123 QETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred cccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 3467788888888889999999999998888864 269999999876
|
|
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.53 E-value=1.7 Score=49.86 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=41.0
Q ss_pred eEEEEeecCCccCCCCceEEEeCCCCCChhh-------------HHHHHH---Hhh-CCCEEEEEcCCCCCCCCC
Q 041113 923 SFIKVQEIGQRIDIQDNILLFLHGFLGTGEE-------------WIPIMK---AVS-GSARCISIDLPGHGGSKM 980 (983)
Q Consensus 923 ~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~-------------w~~~~~---~l~-~~~~vi~~Dl~G~G~S~~ 980 (983)
+++.|...|+-+....+.||+.|+++++++. |..++- .|. ++|.||++|..|-|.|+.
T Consensus 41 ~~~~Y~t~G~ln~~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~ 115 (389)
T PRK06765 41 VQMGYETYGTLNRAKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKD 115 (389)
T ss_pred ceEEEEeccccCCCCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCC
Confidence 5566677776332235789999999997642 777763 353 469999999999876543
|
|
| >TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase | Back alignment and domain information |
|---|
Probab=83.47 E-value=3.1 Score=48.55 Aligned_cols=106 Identities=12% Similarity=0.002 Sum_probs=70.8
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ .-.|..-.+..|.++.. .+.|+++|.-.-.....- .+..+
T Consensus 50 A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl~~A~~--~~~Pvl~i~g~~~~~~~~-----------------~~~~q 110 (432)
T TIGR00173 50 AGFFALGLAKASGRPVAVVCTSGTAVANLLPAVIEASY--SGVPLIVLTADRPPELRG-----------------CGANQ 110 (432)
T ss_pred HHHHHHHHHhccCCCEEEEECCcchHhhhhHHHHHhcc--cCCcEEEEeCCCCHHHhC-----------------CCCCc
Confidence 45678888777777777655 34455667899999887 799998887543321110 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHH----------HHHHHHhhhc-cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVE----------LEEALSMSQH-LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~e----------L~~aL~~a~~-~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-....+|+++++ +.+|++.+.. .+||+.|+|..|-
T Consensus 111 ~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 111 TIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred ccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 46777788877777888887665 4455555544 4699999998764
|
2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=83.41 E-value=9.3 Score=39.45 Aligned_cols=100 Identities=19% Similarity=0.093 Sum_probs=70.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC-----ChHHHHHHHhhc-CCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 703 ELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ-----NEEDIIKYCEES-GLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 703 ~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~-----~~~~~~~l~~~~-~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
.+.+| ..+.++|.++++.+ +.++.|||-..+ ..+.++.+++.. +..|..|=.+.+... ..+..+.+.
T Consensus 3 ~~alD---~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~---~~~~~~~~~ 75 (206)
T TIGR03128 3 QLALD---LLDIEEALELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGE---YEAEQAFAA 75 (206)
T ss_pred EEEec---CCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchH---HHHHHHHHc
Confidence 34454 46789999999999 678999999643 356677887764 566777665554321 135666778
Q ss_pred CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeC
Q 041113 777 GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVS 811 (983)
Q Consensus 777 ~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~ 811 (983)
|+|++.+...- +.....++.+.|+++|+++++.
T Consensus 76 Gad~i~vh~~~--~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 76 GADIVTVLGVA--DDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred CCCEEEEeccC--CHHHHHHHHHHHHHcCCEEEEE
Confidence 99988766543 2234578899999999998765
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=83.41 E-value=4.3 Score=49.29 Aligned_cols=107 Identities=12% Similarity=0.098 Sum_probs=76.3
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ .--|+.-.+..|.+|.. .+.|+++|.-.-... ... . . ....+
T Consensus 59 A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl~~A~~--~~~Pvl~I~G~~~~~-~~~-~-----------~--~~~~q 121 (569)
T PRK09259 59 AGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTALANATT--NCFPMIMISGSSERE-IVD-L-----------Q--QGDYE 121 (569)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHh--cCCCEEEEEccCCcc-ccc-c-----------c--CCCcc
Confidence 55677777777677777765 45566667899999987 899999998653311 000 0 0 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
.+|...+.+.+-....+|++++++...+.+|+. .+||+.|++..|
T Consensus 122 ~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 171 (569)
T PRK09259 122 ELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAK 171 (569)
T ss_pred ccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHH
Confidence 568888899888889999999999888888763 368999999876
|
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=83.21 E-value=4.7 Score=49.10 Aligned_cols=106 Identities=9% Similarity=0.010 Sum_probs=73.8
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ .--|+.-.+..|.+|.. .+.|+++|.-.=.....- ....+
T Consensus 51 A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gla~A~~--~~~Pvl~I~g~~~~~~~~-----------------~~~~Q 111 (579)
T TIGR03457 51 AGHMADGFARVTGRMSMVIGQNGPGVTNCVTAIAAAYW--AHTPVVIVTPEAGTKTIG-----------------LGGFQ 111 (579)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHHHhh--cCCCEEEEeCCCccccCC-----------------CCCCc
Confidence 55677777777677777755 34455557799999987 899998885322211000 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
.+|...+.+.+-....+|++++++...+++|+ ..+||+.||+..|-
T Consensus 112 ~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 161 (579)
T TIGR03457 112 EADQLPMFQEFTKYQGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDY 161 (579)
T ss_pred ccchhhhhhcceeEEEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcch
Confidence 46788888888888999999998888777765 34689999999764
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=83.16 E-value=22 Score=38.93 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=71.8
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc--------------C-CCcEEEEEc
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV--------------G-HRIELRVDA 708 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~--------------g-~~~~l~vDa 708 (983)
||+.-.++-..+.+ .+.++++.||+.+-+.-.. .+.++.++..+++.+.. | ..-.+..+.
T Consensus 75 VPValHLDHg~~~e----~i~~ai~~GftSVM~DgS~-l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~ 149 (307)
T PRK05835 75 IPVALHLDHGTTFE----SCEKAVKAGFTSVMIDASH-HAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDE 149 (307)
T ss_pred CeEEEECCCCCCHH----HHHHHHHcCCCEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccc
Confidence 66666665555554 4566778899999998655 46788888777775532 1 111111222
Q ss_pred CCC-C-CHHHHHHHHhhccc----------CCCcee--ecCCCChHHHHHHHhhcCCcEEeCCCcc
Q 041113 709 NRN-W-TYQEALEFGFLIKD----------CDLQYI--EEPVQNEEDIIKYCEESGLPVALDETID 760 (983)
Q Consensus 709 N~~-~-~~~~a~~~~~~l~~----------~~i~~i--EeP~~~~~~~~~l~~~~~ipIa~dEs~~ 760 (983)
+.. | ++++|.+|.++..- +|. |- .+|--+++-++++++.+++|+.+.=.-.
T Consensus 150 ~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~-Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSG 214 (307)
T PRK05835 150 KDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGA-FKFKGEPKLDFERLQEVKRLTNIPLVLHGASA 214 (307)
T ss_pred ccccCCCHHHHHHHHHhhCCCEEEEccCccccc-cCCCCCCccCHHHHHHHHHHhCCCEEEeCCCC
Confidence 222 5 79999999986421 222 32 5665579999999999999998865533
|
|
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=83.15 E-value=16 Score=39.76 Aligned_cols=134 Identities=17% Similarity=0.202 Sum_probs=86.8
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc---C------------CCcEEEEEc
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV---G------------HRIELRVDA 708 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~---g------------~~~~l~vDa 708 (983)
||+.-.++-+.+.+ .+.++++.||+.+-+.-.. .+.+++++..+++.+.. | .+-.+..|.
T Consensus 75 VPValHLDH~~~~e----~i~~ai~~GftSVMiDgS~-lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~ 149 (284)
T PRK12737 75 IPLALHLDHHEDLD----DIKKKVRAGIRSVMIDGSH-LSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDE 149 (284)
T ss_pred CCEEEECCCCCCHH----HHHHHHHcCCCeEEecCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccccc
Confidence 45544454444444 5667778899999998655 46778887776665432 1 111122233
Q ss_pred CCC-C-CHHHHHHHHhhccc----------CCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 709 NRN-W-TYQEALEFGFLIKD----------CDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 709 N~~-~-~~~~a~~~~~~l~~----------~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
+.. | ++++|.+|.++..- +|+ |-.+|--|++-++++++.+++|+.+.=.-.... +.+++.++.
T Consensus 150 ~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~-y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~----e~~~kai~~ 224 (284)
T PRK12737 150 KDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGL-YKGEPKLDFERLAEIREKVSIPLVLHGASGVPD----EDVKKAISL 224 (284)
T ss_pred ccccCCCHHHHHHHHHHhCCCEEeeccCccccc-cCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCH----HHHHHHHHC
Confidence 332 5 89999999885422 232 445664479999999999999998876544432 468888888
Q ss_pred CceEEEEcCCC
Q 041113 777 GIVAIVIKPSV 787 (983)
Q Consensus 777 ~~~~i~~k~~~ 787 (983)
|+.=||+....
T Consensus 225 Gi~KiNi~T~l 235 (284)
T PRK12737 225 GICKVNVATEL 235 (284)
T ss_pred CCeEEEeCcHH
Confidence 88777876543
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=82.91 E-value=6.6 Score=41.76 Aligned_cols=113 Identities=14% Similarity=0.272 Sum_probs=74.6
Q ss_pred HHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCC------CCC--HHHHHHHHhhcccCCCcee-
Q 041113 662 IATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANR------NWT--YQEALEFGFLIKDCDLQYI- 732 (983)
Q Consensus 662 ~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~------~~~--~~~a~~~~~~l~~~~i~~i- 732 (983)
.++++.+.|... +-+|. ..-.|.+.++.+-+.++..+.+.+|... +|+ ..+..++++.+++.++.++
T Consensus 89 dv~~~l~~Ga~k--vviGs--~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~ii 164 (241)
T PRK14024 89 SLEAALATGCAR--VNIGT--AALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYV 164 (241)
T ss_pred HHHHHHHCCCCE--EEECc--hHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEE
Confidence 456667778874 44554 4456778888888888777777778732 453 2345677777777765432
Q ss_pred ------ecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhh---cCCCceEEEE
Q 041113 733 ------EEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKY---AHPGIVAIVI 783 (983)
Q Consensus 733 ------EeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~---~~~~~~~i~~ 783 (983)
++-.. +++.++++++.+++||.+.=-+.+..| +..+ ...|++.+.+
T Consensus 165 v~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D-----~~~l~~~~~~GvdgV~i 221 (241)
T PRK14024 165 VTDVTKDGTLTGPNLELLREVCARTDAPVVASGGVSSLDD-----LRALAELVPLGVEGAIV 221 (241)
T ss_pred EEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHH-----HHHHhhhccCCccEEEE
Confidence 22222 578889999989999888777777653 4333 2357877654
|
|
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=82.82 E-value=5.5 Score=48.38 Aligned_cols=106 Identities=16% Similarity=0.055 Sum_probs=73.4
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+-+++++.+|++ .--|+...++.+.++-. .+.|+++|.-.-.....- ....+
T Consensus 50 A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i~~A~~--~~~Pvl~I~G~~~~~~~~-----------------~~~~q 110 (575)
T TIGR02720 50 GALAAAADAKLTGKIGVCFGSAGPGATHLLNGLYDAKE--DHVPVLALVGQVPTTGMN-----------------MDTFQ 110 (575)
T ss_pred HHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHHHHHhh--cCCCEEEEecCCccccCC-----------------CCCcc
Confidence 45677777766677777765 34455557899999987 899998888644432111 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhh----hccCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMS----QHLGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a----~~~~~p~lIeV~~~~ 452 (983)
.+|-..+.+.+-....+|.+++++...+.+| ....||+.|++..|-
T Consensus 111 ~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 160 (575)
T TIGR02720 111 EMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDF 160 (575)
T ss_pred eechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcch
Confidence 4577788888887888999888776666554 446799999999773
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=82.58 E-value=5 Score=48.95 Aligned_cols=106 Identities=8% Similarity=-0.019 Sum_probs=74.1
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ .--|+...+..+.+|.+ .+.|+++|.-.=... .+ .. ...+
T Consensus 55 A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~~A~~--~~~Pvl~I~g~~~~~----~~---------~~----~~~q 115 (588)
T PRK07525 55 AGHMADGYTRVTGRMGMVIGQNGPGITNFVTAVATAYW--AHTPVVLVTPQAGTK----TI---------GQ----GGFQ 115 (588)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHhh--cCCCEEEEeCCCCcc----cC---------CC----CCCc
Confidence 56778888777777776665 23455557899999987 899998887221111 00 00 1123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-....++++++++...|++|+ ...||+.|||..|-
T Consensus 116 ~~d~~~l~~~~tk~~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv 165 (588)
T PRK07525 116 EAEQMPMFEDMTKYQEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDY 165 (588)
T ss_pred ccchhhhhhhheeEEEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhH
Confidence 45778888888778889999988888877765 34789999998763
|
|
| >cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins | Back alignment and domain information |
|---|
Probab=82.51 E-value=5.8 Score=46.01 Aligned_cols=116 Identities=12% Similarity=0.013 Sum_probs=64.6
Q ss_pred cccchhhHHHHHHHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhh
Q 041113 69 KSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDH 148 (983)
Q Consensus 69 ~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~ 148 (983)
+...+++++.+++.|+++++|+++.|..........+.+|++.+|..+- +.. . ....+..+.+. ..+.
T Consensus 53 ~isWdeAl~~ia~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~-~~~-~------~~~~~~~~~~~----~~g~ 120 (415)
T cd02761 53 PVSLEEAIEKAAEILKEAKRPLFYGLGTTVCEAQRAGIELAEKLGAIID-HAA-S------VCHGPNLLALQ----DSGW 120 (415)
T ss_pred CCCcHHHHHHHHHHHHhhcCCEEEEcccchHHHHHHHHHHHHHHCCCcc-ccc-c------ccccchHHHHH----hCCC
Confidence 3567889999999999999998874443322334577899999997432 111 1 11122222111 0010
Q ss_pred hccCcccccc-CCCCEEEEeCCccccHHHHHH------HHh------cCCceEEEEcCCCCCC
Q 041113 149 ALLSESVKDW-IQFDVIIQIGSRITSKRISQM------IEE------CFPCTYILVDNHPCRH 198 (983)
Q Consensus 149 ~~~~~~~~~~-~~aDlvl~iG~~~~~~~~~~~------~~~------~~~~~~i~id~d~~~~ 198 (983)
.. .....+ .++|+||++|+.+.......+ ... ....++|.||+.....
T Consensus 121 ~~--~~~~di~~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~t 181 (415)
T cd02761 121 PT--TTLGEVKNRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDT 181 (415)
T ss_pred cc--ccHHHHHhcCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcch
Confidence 10 111234 479999999998765432211 011 0223688888766544
|
Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins. |
| >KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.36 E-value=5 Score=42.22 Aligned_cols=44 Identities=25% Similarity=0.347 Sum_probs=35.3
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC--CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG--SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~--~~~vi~~Dl~G~G~S~~~ 981 (983)
.+++++.||...+....-.+...|+. +++++++|..|+|.|+..
T Consensus 60 ~~~lly~hGNa~Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~ 105 (258)
T KOG1552|consen 60 HPTLLYSHGNAADLGQMVELFKELSIFLNCNVVSYDYSGYGRSSGK 105 (258)
T ss_pred ceEEEEcCCcccchHHHHHHHHHHhhcccceEEEEecccccccCCC
Confidence 47999999997777655555556666 699999999999999853
|
|
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.33 E-value=5.5 Score=48.07 Aligned_cols=106 Identities=14% Similarity=0.063 Sum_probs=74.4
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|.|.+.+++++.+|++ |= |+...+..+..|.. .+.|+++|.-.=..+.+-+ +. ...
T Consensus 55 A~~~A~gyar~tg~~~v~~~t~Gp-G~~N~~~gi~~A~~--~~~Pvl~i~g~~~~~~~~~-------------~~--~~~ 116 (542)
T PRK08266 55 AGYMAFGYARSTGRPGVCSVVPGP-GVLNAGAALLTAYG--CNSPVLCLTGQIPSALIGK-------------GR--GHL 116 (542)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCC-cHHHHHHHHHHHHh--hCCCEEEEecCCChhhccC-------------CC--Ccc
Confidence 56788888888777777765 44 44456789999887 8999988874321111100 00 001
Q ss_pred CC-CCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 406 HN-ISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 406 ~~-~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
+. +|...+.+.+-....+|++++++...+++|+. .+||+.||+..|
T Consensus 117 ~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 117 HEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred eecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 22 57888889888889999999998888887763 368999999876
|
|
| >PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli | Back alignment and domain information |
|---|
Probab=82.31 E-value=3.4 Score=45.43 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=64.8
Q ss_pred CHHHHHHHHhhcccCCCceeecCCCCh---HHHHHHHhh-----cCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEc
Q 041113 713 TYQEALEFGFLIKDCDLQYIEEPVQNE---EDIIKYCEE-----SGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIK 784 (983)
Q Consensus 713 ~~~~a~~~~~~l~~~~i~~iEeP~~~~---~~~~~l~~~-----~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k 784 (983)
+.+..++-+.+|++.|-+.+-=-+++. +.+.+++++ +++|+.+|=+..- +.....++. ++-+.+.
T Consensus 29 Dv~atv~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~------~lAl~a~~~-v~kiRIN 101 (359)
T PF04551_consen 29 DVEATVAQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDY------RLALEAIEA-VDKIRIN 101 (359)
T ss_dssp -HHHHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTC------HHHHHHHHC--SEEEE-
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCH------HHHHHHHHH-hCeEEEC
Confidence 455566666667777766666666643 445677778 9999999987442 123333444 8899999
Q ss_pred CCCc--------CC-HHHHHHHHHHHHHcCCcEEeCCCCch
Q 041113 785 PSVI--------GG-FENAGLIARWAQRHGKMAVVSAAFES 816 (983)
Q Consensus 785 ~~~~--------GG-l~~~~~~~~~A~~~gi~~~~~~~~es 816 (983)
|+-+ |+ -....++++.|+++|+++-++-+.+|
T Consensus 102 PGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GS 142 (359)
T PF04551_consen 102 PGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGS 142 (359)
T ss_dssp TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGG
T ss_pred CCcccccccccccchHHHHHHHHHHHHHCCCCEEEeccccc
Confidence 9999 88 88999999999999999888776654
|
It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A. |
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=82.19 E-value=4.5 Score=48.96 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=74.9
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+..++++.++++ |=| +.-.+..+..|.. .+.|+++|.-.=.....- -...
T Consensus 51 A~~~Adgyar~tg~~gv~~~t~GpG-~~n~l~~i~~A~~--~~~Pvl~i~g~~~~~~~~-----------------~~~~ 110 (558)
T TIGR00118 51 AAHAADGYARASGKVGVVLVTSGPG-ATNLVTGIATAYM--DSIPMVVFTGQVPTSLIG-----------------SDAF 110 (558)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCc-HHHHHHHHHHHHh--cCCCEEEEecCCCccccC-----------------CCCC
Confidence 56678888877777777666 444 4446789999887 899998888632221110 0112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-----CCCEEEEEEcC
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-----GTDRVIEVESC 451 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-----~~p~lIeV~~~ 451 (983)
+..|...+.+.+-....+|++++++...+.+|+.. +||+.|+|..|
T Consensus 111 q~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 111 QEADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred cccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 34678888998888999999999998888887642 58999999866
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=82.05 E-value=5.1 Score=48.82 Aligned_cols=105 Identities=14% Similarity=0.142 Sum_probs=74.3
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+..++++.+|++ |=| +...++.|.+|.. .+.|+++|.-.=..+.+-+ ...
T Consensus 63 A~~~Adgyar~tg~~gv~~~t~GPG-~~N~l~gl~~A~~--~~~Pvl~I~G~~~~~~~~~-----------------~~~ 122 (585)
T CHL00099 63 AAHAADGYARSTGKVGVCFATSGPG-ATNLVTGIATAQM--DSVPLLVITGQVGRAFIGT-----------------DAF 122 (585)
T ss_pred HHHHHHHHHHhcCCcEEEEECCCCc-HHHHHHHHHHHhh--cCCCEEEEecCCCccccCC-----------------CCc
Confidence 56778888877777877765 444 4446799999987 8999988886433221110 011
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
+..|...+.+.+-....+|++++++.+.+++|+. .+||+.|++..|-
T Consensus 123 q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 174 (585)
T CHL00099 123 QEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDV 174 (585)
T ss_pred cccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhh
Confidence 3356667777777778899999999998888763 3589999998763
|
|
| >KOG1838 consensus Alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.57 E-value=2.8 Score=47.28 Aligned_cols=44 Identities=27% Similarity=0.507 Sum_probs=33.3
Q ss_pred CceEEEeCCCCCChhh-H-HHHHHH-hhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEE-W-IPIMKA-VSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~-w-~~~~~~-l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
.|.||++||+.+++.. + +.++.. ..+.|+|+++..||+|.|.-.
T Consensus 125 ~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~Lt 171 (409)
T KOG1838|consen 125 DPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLT 171 (409)
T ss_pred CcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccC
Confidence 6999999999987764 3 233333 345699999999999988743
|
|
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=81.38 E-value=20 Score=38.89 Aligned_cols=132 Identities=15% Similarity=0.129 Sum_probs=80.7
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc---CCCcE--E---------EEEcC
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV---GHRIE--L---------RVDAN 709 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~---g~~~~--l---------~vDaN 709 (983)
||+.-.++.+.+.+ .+.++++.||+.+-+.-.. .+.++.++..+++.+.. |-.++ | ..+..
T Consensus 75 vPV~lHLDH~~~~e----~i~~Ai~~GftSVM~DgS~-l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~ 149 (283)
T PRK07998 75 VPVSLHLDHGKTFE----DVKQAVRAGFTSVMIDGAA-LPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEA 149 (283)
T ss_pred CCEEEECcCCCCHH----HHHHHHHcCCCEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccc
Confidence 44444444344444 3445667899999996543 45677887777766532 21110 0 01111
Q ss_pred CCC-CHHHHHHHHhhccc----------CCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCc
Q 041113 710 RNW-TYQEALEFGFLIKD----------CDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGI 778 (983)
Q Consensus 710 ~~~-~~~~a~~~~~~l~~----------~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~ 778 (983)
..+ ++++|.+|.++..- +|+ |-. |=-+++-++++++.+++|+.+.=.--... +.++..+..|+
T Consensus 150 ~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~-Y~~-p~l~~~~l~~I~~~~~vPLVlHGgSG~~~----e~~~~ai~~Gi 223 (283)
T PRK07998 150 DCKTEPEKVKDFVERTGCDMLAVSIGNVHGL-EDI-PRIDIPLLKRIAEVSPVPLVIHGGSGIPP----EILRSFVNYKV 223 (283)
T ss_pred cccCCHHHHHHHHHHhCcCeeehhccccccC-CCC-CCcCHHHHHHHHhhCCCCEEEeCCCCCCH----HHHHHHHHcCC
Confidence 224 89999999886532 122 222 33378999999999999998865544332 36788888888
Q ss_pred eEEEEcCC
Q 041113 779 VAIVIKPS 786 (983)
Q Consensus 779 ~~i~~k~~ 786 (983)
.-+|+...
T Consensus 224 ~KiNi~Te 231 (283)
T PRK07998 224 AKVNIASD 231 (283)
T ss_pred cEEEECHH
Confidence 77787654
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=81.37 E-value=4.4 Score=49.15 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=75.7
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+.+++++.+|++ |=| +.-.++.|.++.. .+.|+++|.-.-....+-+ ...
T Consensus 60 A~~~Adgyar~tg~~gv~~~t~GPG-~~n~~~gla~A~~--~~~Pvl~i~G~~~~~~~~~-----------------~~~ 119 (566)
T PRK07282 60 ALHEAEGYAKSTGKLGVAVVTSGPG-ATNAITGIADAMS--DSVPLLVFTGQVARAGIGK-----------------DAF 119 (566)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHHHhh--cCCCEEEEecccccccCCC-----------------CCc
Confidence 66778888777776766655 555 4446789999887 8999988886544332210 012
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-----CCCEEEEEEcCc
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-----GTDRVIEVESCI 452 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-----~~p~lIeV~~~~ 452 (983)
+..|...+.+.+-....+|++++++.+.+.+|++. +||+.|++..|-
T Consensus 120 q~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 171 (566)
T PRK07282 120 QEADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDV 171 (566)
T ss_pred cccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhh
Confidence 34577788888888899999999998888887642 589999998764
|
|
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.30 E-value=6.7 Score=46.98 Aligned_cols=106 Identities=8% Similarity=0.054 Sum_probs=75.1
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|=|.+-+++++.+|++ .--|+.-.+..|.++.. .+.|+++|.-.......- . ...+
T Consensus 55 A~~mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl~~A~~--d~~Pvl~i~G~~~~~~~~-------------~----~~~q 115 (518)
T PRK12474 55 VTGAADGYGRIAGKPAVTLLHLGPGLANGLANLHNARR--AASPIVNIVGDHAVEHLQ-------------Y----DAPL 115 (518)
T ss_pred HHHHHHHHHHHhCCCEEEEEccchhHhHhHHHHHHHhh--cCCCEEEEeccCchhhcC-------------C----CCcc
Confidence 55677777777677776654 34446667888888887 899999888643321000 0 0113
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|...+++.+-....+|++++++...|++|+. ..||+.|++..|-
T Consensus 116 ~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv 166 (518)
T PRK12474 116 TSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166 (518)
T ss_pred ccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 358888888887788899999999999988873 3589999998774
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=81.19 E-value=3.9 Score=45.98 Aligned_cols=122 Identities=19% Similarity=0.244 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChH----HHHHHHHHHHHHcCCCc--EEEEEcCCC
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPI----KDAEVIQEVRKKVGHRI--ELRVDANRN 711 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~----~d~~~v~~vr~~~g~~~--~l~vDaN~~ 711 (983)
++..+.++.+++.||..+-|+.+.. .+++ -=++.|++||+++|+++ -+++-+...
T Consensus 149 ~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~ 228 (341)
T PF00724_consen 149 EDFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDF 228 (341)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCS
T ss_pred HHHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecc
Confidence 4566677778889999999998642 1221 12678999999999996 667766543
Q ss_pred ----CCHHHHHHHHhhcccCCCcee----------ecCCC------C----hHHHHHHHhhcCCcEEeCCCccCcCCChH
Q 041113 712 ----WTYQEALEFGFLIKDCDLQYI----------EEPVQ------N----EEDIIKYCEESGLPVALDETIDKFQKDPL 767 (983)
Q Consensus 712 ----~~~~~a~~~~~~l~~~~i~~i----------EeP~~------~----~~~~~~l~~~~~ipIa~dEs~~~~~~~~~ 767 (983)
++.++..++++.++..++.++ ..|.. . .+....+++..++||.+.-.+.+..
T Consensus 229 ~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~---- 304 (341)
T PF00724_consen 229 VEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPE---- 304 (341)
T ss_dssp STTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHH----
T ss_pred cCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchh----
Confidence 456777666666655432222 22322 1 1233566777888988777666642
Q ss_pred HHHHhhcC-CCceEEEE
Q 041113 768 NMLEKYAH-PGIVAIVI 783 (983)
Q Consensus 768 ~~~~~~~~-~~~~~i~~ 783 (983)
....+++ ..+|.|-+
T Consensus 305 -~ae~~l~~g~~DlV~~ 320 (341)
T PF00724_consen 305 -QAEKALEEGKADLVAM 320 (341)
T ss_dssp -HHHHHHHTTSTSEEEE
T ss_pred -hhHHHHhcCCceEeec
Confidence 2334443 44677643
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1) | Back alignment and domain information |
|---|
Probab=81.17 E-value=9.8 Score=43.62 Aligned_cols=116 Identities=13% Similarity=0.077 Sum_probs=65.6
Q ss_pred ccchhhHHHHHHHHhcCC--ceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchh
Q 041113 70 SYTYCQMAEVLELVQGVN--KGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLD 147 (983)
Q Consensus 70 ~~~~~~i~~~~~~L~~Ak--rPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g 147 (983)
....++++.+++.|++.+ +..++.|..........+.+|++.+|.+.+.... . ..... . ..+..+
T Consensus 69 isWdeAl~~ia~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~~-~-------~~~~~---~--~~~~~~ 135 (386)
T cd02768 69 VSWEEALKTVAEGLKAVKGDKIGGIAGPRADLESLFLLKKLLNKLGSNNIDHRL-R-------QSDLP---A--DNRLRG 135 (386)
T ss_pred cCHHHHHHHHHHHHHhcChhheEEEecCCCCHHHHHHHHHHHHHhCCCCchhhh-c-------cccCc---c--cccccc
Confidence 456789999999999887 6666666644433445788999999877554321 1 00000 0 001000
Q ss_pred hhccCccccccCCCCEEEEeCCccccHHH--HHHHHh-c-C-CceEEEEcCCCCCC
Q 041113 148 HALLSESVKDWIQFDVIIQIGSRITSKRI--SQMIEE-C-F-PCTYILVDNHPCRH 198 (983)
Q Consensus 148 ~~~~~~~~~~~~~aDlvl~iG~~~~~~~~--~~~~~~-~-~-~~~~i~id~d~~~~ 198 (983)
..........+.++|+||++|+.+.+... ...... . . ..++|.||......
T Consensus 136 ~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~ 191 (386)
T cd02768 136 NYLFNTSIAEIEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL 191 (386)
T ss_pred CcccCCCHHHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc
Confidence 01111223456799999999998754332 222221 1 2 34788888766544
|
The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun |
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=81.16 E-value=18 Score=39.26 Aligned_cols=135 Identities=16% Similarity=0.210 Sum_probs=87.2
Q ss_pred eeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc--------------C-CCcEEEEE
Q 041113 643 SIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV--------------G-HRIELRVD 707 (983)
Q Consensus 643 ~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~--------------g-~~~~l~vD 707 (983)
+||+.-.++-+.+.+ .+.++++.||+.+-+.-.. .+.++++++.+.+.+.. | .+-.+..+
T Consensus 74 ~VPValHLDH~~~~e----~i~~ai~~GftSVM~DgS~-lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~ 148 (284)
T PRK12857 74 SVPVALHLDHGTDFE----QVMKCIRNGFTSVMIDGSK-LPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVD 148 (284)
T ss_pred CCCEEEECCCCCCHH----HHHHHHHcCCCeEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcc
Confidence 355555554445554 4556677899999998655 56788888777776532 1 11111222
Q ss_pred cCC-CC-CHHHHHHHHhhccc----------CCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC
Q 041113 708 ANR-NW-TYQEALEFGFLIKD----------CDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH 775 (983)
Q Consensus 708 aN~-~~-~~~~a~~~~~~l~~----------~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~ 775 (983)
.+. .| ++++|.+|.+...- +|+ |-.+|--+++-++++++.+++|+.+.=.--... +.+++.++
T Consensus 149 ~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~-y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~----e~~~~ai~ 223 (284)
T PRK12857 149 EREAAMTDPEEARRFVEETGVDALAIAIGTAHGP-YKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPD----EAIRKAIS 223 (284)
T ss_pred cchhhcCCHHHHHHHHHHHCCCEEeeccCccccc-cCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCH----HHHHHHHH
Confidence 222 25 79999999875422 122 344564479999999999999998865544432 46888888
Q ss_pred CCceEEEEcCCC
Q 041113 776 PGIVAIVIKPSV 787 (983)
Q Consensus 776 ~~~~~i~~k~~~ 787 (983)
.|+.=+|+....
T Consensus 224 ~Gi~KiNi~T~~ 235 (284)
T PRK12857 224 LGVRKVNIDTNI 235 (284)
T ss_pred cCCeEEEeCcHH
Confidence 888777887653
|
|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=81.08 E-value=6 Score=48.24 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=74.6
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ .--|+.-.+..+.+|.. .+.|+++|.-.=... .+ . ....+
T Consensus 71 A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl~~A~~--~~~Pvl~i~G~~~~~----~~-----------~--~~~~q 131 (587)
T PRK06965 71 AVHAADGYARATGKVGVALVTSGPGVTNAVTGIATAYM--DSIPMVVISGQVPTA----AI-----------G--QDAFQ 131 (587)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHHhh--cCCCEEEEecCCCcc----cc-----------C--CCCcc
Confidence 56688888887766666554 45566668899999987 899998876321111 00 0 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
.+|...+.+.+--...+|++++++.+.+.+|+. ..||+.|++..|-
T Consensus 132 ~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 182 (587)
T PRK06965 132 ECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDV 182 (587)
T ss_pred cccHHHHhcCCcceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhh
Confidence 468888888888889999999998887777753 2589999998874
|
|
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=80.95 E-value=5.2 Score=48.54 Aligned_cols=113 Identities=13% Similarity=0.061 Sum_probs=75.4
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ .=-|+...+..|.+|.. .+.|+++|.-.-.....-+. ...+......+
T Consensus 62 A~~~Adgyar~tgk~gv~~~t~GPG~~N~~~gla~A~~--d~~Pvl~I~G~~~~~~~~~~---------~~~~~~~~~~q 130 (569)
T PRK08327 62 AISMAHGYALVTGKPQAVMVHVDVGTANALGGVHNAAR--SRIPVLVFAGRSPYTEEGEL---------GSRNTRIHWTQ 130 (569)
T ss_pred HHHHHHHHHHhhCCCeEEEEecCHHHHHHHHHHHHHhh--cCCCEEEEeccCCccccccc---------cccccCcccch
Confidence 56677777777766666654 33445557899999987 89999888865332111000 00000011123
Q ss_pred C-CCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 N-ISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~-~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
. .|...+.+.+--...+|++++++...+.+|+. .+||+.|||..|
T Consensus 131 e~~d~~~~~~~vtk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 131 EMRDQGGLVREYVKWDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPRE 181 (569)
T ss_pred hhhhHHHHHhhhhhhhcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHH
Confidence 3 58888889888888999999999888888763 368999999865
|
|
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=80.94 E-value=56 Score=36.08 Aligned_cols=153 Identities=15% Similarity=0.117 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccCC----CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCC
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVARR----ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~~----~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i 729 (983)
-+.+.+.+.++.+.+.|.+.+=+--..+ .+.++=.+.++.+++.++.++.+++=.. . +.+++++.++..++.|.
T Consensus 25 iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~~~~a~~~Ga 102 (303)
T PRK03620 25 FDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQAIEYAQAAERAGA 102 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHHHHHHHHHHHHhCC
Confidence 4678899999999999999876532211 2345556778888888888899998664 5 88999999999999876
Q ss_pred ceee--cCCC---ChHH----HHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHH
Q 041113 730 QYIE--EPVQ---NEED----IIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARW 800 (983)
Q Consensus 730 ~~iE--eP~~---~~~~----~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~ 800 (983)
..+- -|.. +.++ ++.+.+.+++||..=.. ... +-+.+.+..+.+..-.++-+|-+ +|-+....++.+.
T Consensus 103 dav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~-~g~-~l~~~~l~~L~~~~pni~giK~s-~~d~~~~~~~~~~ 179 (303)
T PRK03620 103 DGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNR-DNA-VLTADTLARLAERCPNLVGFKDG-VGDIELMQRIVRA 179 (303)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcC-CCC-CCCHHHHHHHHhhCCCEEEEEeC-CCCHHHHHHHHHH
Confidence 5433 3321 3344 35677888999887542 211 11334566666333355668876 4667776666543
Q ss_pred HHHcCCcEEeCC
Q 041113 801 AQRHGKMAVVSA 812 (983)
Q Consensus 801 A~~~gi~~~~~~ 812 (983)
.. -++.+..++
T Consensus 180 ~~-~~f~vl~G~ 190 (303)
T PRK03620 180 LG-DRLLYLGGL 190 (303)
T ss_pred cC-CCeEEEeCC
Confidence 32 256655443
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=80.78 E-value=20 Score=38.95 Aligned_cols=135 Identities=13% Similarity=0.156 Sum_probs=86.9
Q ss_pred eeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc---C------------CCcEEEEE
Q 041113 643 SIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV---G------------HRIELRVD 707 (983)
Q Consensus 643 ~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~---g------------~~~~l~vD 707 (983)
+||+.-.++-..+.+ .+.++++.||+.+-+.-.. .+.+++++..+++.+.. | .+-.+..+
T Consensus 74 ~VPV~lHLDHg~~~e----~i~~Ai~~GftSVM~DgS~-l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~ 148 (284)
T PRK09195 74 HHPLALHLDHHEKFD----DIAQKVRSGVRSVMIDGSH-LPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVD 148 (284)
T ss_pred CCCEEEECCCCCCHH----HHHHHHHcCCCEEEeCCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccc
Confidence 355555554444543 4667778899999998655 56788887776665432 1 11111222
Q ss_pred cC-CCC-CHHHHHHHHhhcc--c--------CCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC
Q 041113 708 AN-RNW-TYQEALEFGFLIK--D--------CDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH 775 (983)
Q Consensus 708 aN-~~~-~~~~a~~~~~~l~--~--------~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~ 775 (983)
.+ ..| ++++|.+|.++.. - +|+ |-.+|--+++-++++++.+++|+.+.=.--... +++++.++
T Consensus 149 ~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~-y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~----e~~~~ai~ 223 (284)
T PRK09195 149 EADALYTDPAQAREFVEATGIDSLAVAIGTAHGM-YKGEPKLDFDRLENIRQWVNIPLVLHGASGLPT----KDIQQTIK 223 (284)
T ss_pred cccccCCCHHHHHHHHHHHCcCEEeeccCccccc-cCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCH----HHHHHHHH
Confidence 22 225 8999999988532 1 232 445564479999999999999998876544432 46888888
Q ss_pred CCceEEEEcCCC
Q 041113 776 PGIVAIVIKPSV 787 (983)
Q Consensus 776 ~~~~~i~~k~~~ 787 (983)
.|+.=||+....
T Consensus 224 ~Gi~KiNi~T~l 235 (284)
T PRK09195 224 LGICKVNVATEL 235 (284)
T ss_pred cCCeEEEeCcHH
Confidence 888777876544
|
|
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.77 E-value=5.8 Score=48.24 Aligned_cols=105 Identities=15% Similarity=0.042 Sum_probs=71.8
Q ss_pred hHHHHHhhhhccCceEEEEEc-cchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVG-DISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~G-DGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++. .-|+...+..+.+|-. .+.|+++|.-.=... .+. .+..+
T Consensus 53 A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl~~A~~--~~~Pvl~I~G~~~~~-~~~----------------~~~~Q 113 (578)
T PRK06546 53 AAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGLYDAHR--SGAPVLAIASHIPSA-QIG----------------SGFFQ 113 (578)
T ss_pred HHHHHHhHHHhhCCceEEEECCCCcHHHHHHHHHHHHh--cCCCEEEEeCCCCcc-ccC----------------CCCcc
Confidence 556777777777778887753 4455557789999987 899998887522111 100 00113
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~~~ 451 (983)
..|...+.+.+=....+|++++++...+.+|+ ..+||+.|++..|
T Consensus 114 e~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 114 ETHPDRLFVECSGYCEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred ccChhhhcccceeeEeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 35666777776667889999999888777765 3479999998766
|
|
| >PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=80.76 E-value=7 Score=48.49 Aligned_cols=94 Identities=14% Similarity=0.145 Sum_probs=57.4
Q ss_pred EEEEEccchhhhc--cchHHHHHhhccCCC---EEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHHc
Q 041113 343 VLCVVGDISFLHD--TNGLAILKQRMKRKP---ILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAH 417 (983)
Q Consensus 343 vv~i~GDGsf~~~--~~eL~Ta~~~~~~lp---v~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~ 417 (983)
.|++-||.+|-=- +.|-..+++ -.+.+ .+.||+||. +|+--. +. .. ........+|+++
T Consensus 650 pi~~hGdaafagQGvV~Etlnla~-l~~y~tGGtIhvivNNq-iGftT~-p~--------~~-----Rss~y~td~ak~~ 713 (1228)
T PRK12270 650 PILLHGDAAFAGQGVVAETLNLSQ-LRGYRTGGTIHIVVNNQ-VGFTTA-PE--------SS-----RSSEYATDVAKMI 713 (1228)
T ss_pred EEEEeccccccCCchHHHHHHHHh-ccCCCCCCeEEEEEecC-cccccC-cc--------cc-----ccchhhHHHHhhc
Confidence 4568899997422 233333333 13566 677777776 443311 10 00 0123456788999
Q ss_pred CCceeeeC--CHHHHHHHHHhhhc----cCCCEEEEEEcCc
Q 041113 418 GLNHVQVK--TKVELEEALSMSQH----LGTDRVIEVESCI 452 (983)
Q Consensus 418 G~~~~~v~--~~~eL~~aL~~a~~----~~~p~lIeV~~~~ 452 (983)
++..+.|+ +++....+.+-|++ -++++|||+.+.+
T Consensus 714 ~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYR 754 (1228)
T PRK12270 714 QAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYR 754 (1228)
T ss_pred CCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence 99999886 56666666665553 4899999999876
|
|
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=80.60 E-value=36 Score=37.42 Aligned_cols=151 Identities=9% Similarity=0.027 Sum_probs=92.4
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhc---CCCEEEEeccCCC---------ChHHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEE---GFTAIKLKVARRA---------DPIKDAEVIQEVRKKVGHRIELRVDANRN 711 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~---G~~~~KiKig~~~---------~~~~d~~~v~~vr~~~g~~~~l~vDaN~~ 711 (983)
.|+..++. .. ++++.+.+++..+. |...|-+-++.+. +++.=.+.++++|+.+. +.+.+=-.-.
T Consensus 92 ~pvivsi~-g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~--iPv~vKl~p~ 167 (294)
T cd04741 92 KPFFISVT-GS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYS--IPVGVKTPPY 167 (294)
T ss_pred CeEEEECC-CC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcC--CCEEEEeCCC
Confidence 45566663 33 88888888877664 6899999887641 34445667888888763 3444333334
Q ss_pred CCHHHHHHHHhhcccC--CCceee----------------cCC----------C----ChHHH---HHHHhhcC--CcEE
Q 041113 712 WTYQEALEFGFLIKDC--DLQYIE----------------EPV----------Q----NEEDI---IKYCEESG--LPVA 754 (983)
Q Consensus 712 ~~~~~a~~~~~~l~~~--~i~~iE----------------eP~----------~----~~~~~---~~l~~~~~--ipIa 754 (983)
|+.++..++++.+.+. ++.+|= .|. . .+..+ ++++++.+ +||.
T Consensus 168 ~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIi 247 (294)
T cd04741 168 TDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQII 247 (294)
T ss_pred CCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEE
Confidence 6766666777767665 322221 111 0 12223 55666663 8988
Q ss_pred eCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcC-CHHHHHHHHHHHHH
Q 041113 755 LDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIG-GFENAGLIARWAQR 803 (983)
Q Consensus 755 ~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~G-Gl~~~~~~~~~A~~ 803 (983)
+-=-+.+..| ..+++..|++.+++-..... |..-..++.+.-++
T Consensus 248 g~GGI~s~~d-----a~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~ 292 (294)
T cd04741 248 GVGGVLDGRG-----AFRMRLAGASAVQVGTALGKEGPKVFARIEKELED 292 (294)
T ss_pred EeCCCCCHHH-----HHHHHHcCCCceeEchhhhhcCchHHHHHHHHHHh
Confidence 8777777654 33444578888888777664 77766666554443
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=80.55 E-value=8.2 Score=42.94 Aligned_cols=39 Identities=15% Similarity=0.358 Sum_probs=28.1
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHG 976 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G 976 (983)
-|.||.+||.++....|...+..-...|-|+++|.+|+|
T Consensus 83 ~Pavv~~hGyg~~~~~~~~~~~~a~~G~~vl~~d~rGqg 121 (320)
T PF05448_consen 83 LPAVVQFHGYGGRSGDPFDLLPWAAAGYAVLAMDVRGQG 121 (320)
T ss_dssp EEEEEEE--TT--GGGHHHHHHHHHTT-EEEEE--TTTS
T ss_pred cCEEEEecCCCCCCCCcccccccccCCeEEEEecCCCCC
Confidence 588999999999998898877766678999999999999
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=80.48 E-value=9.8 Score=40.29 Aligned_cols=95 Identities=14% Similarity=0.103 Sum_probs=69.3
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCC---------------CCHHHH
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRN---------------WTYQEA 717 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~---------------~~~~~a 717 (983)
+.++++..+.++++.+.|...+||.=+ .+=+++|+++|++- =-+-=++|+... -..+++
T Consensus 85 g~~~~~~~~~~~~l~~aGa~gv~iED~-----~~~~~~i~ai~~a~-i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~a 158 (240)
T cd06556 85 YGAPTAAFELAKTFMRAGAAGVKIEGG-----EWHIETLQMLTAAA-VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQL 158 (240)
T ss_pred CcCHHHHHHHHHHHHHcCCcEEEEcCc-----HHHHHHHHHHHHcC-CeEEEEeCCchhhhhccCCceeeccCHHHHHHH
Confidence 346788999999999999999998532 34456788888763 112234676211 125688
Q ss_pred HHHHhhcccCC--CceeecCCCChHHHHHHHhhcCCcEEe
Q 041113 718 LEFGFLIKDCD--LQYIEEPVQNEEDIIKYCEESGLPVAL 755 (983)
Q Consensus 718 ~~~~~~l~~~~--i~~iEeP~~~~~~~~~l~~~~~ipIa~ 755 (983)
++.++.+++.| ..|+|-+ + .+..+++.+..++|+..
T Consensus 159 i~Ra~ay~~AGAd~i~~e~~-~-~e~~~~i~~~~~~P~~~ 196 (240)
T cd06556 159 IADALAYAPAGADLIVMECV-P-VELAKQITEALAIPLAG 196 (240)
T ss_pred HHHHHHHHHcCCCEEEEcCC-C-HHHHHHHHHhCCCCEEE
Confidence 88888888875 5689877 5 89999999999999875
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=80.37 E-value=39 Score=35.09 Aligned_cols=139 Identities=15% Similarity=0.154 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..++++..+.++.+.+.|++.+-+-.-. ..-.+.|+++|+.+ |+ +.|=+-.-.+.+++.+.. +.|-.|+
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~~iEitl~~----~~~~~~I~~l~~~~-p~--~~IGAGTVl~~~~a~~a~----~aGA~Fi 91 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLPVLEVTLRT----PAALEAIRLIAKEV-PE--ALIGAGTVLNPEQLAQAI----EAGAQFI 91 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCC----ccHHHHHHHHHHHC-CC--CEEEEeeccCHHHHHHHH----HcCCCEE
Confidence 4689999999999999999998887543 35677899999998 55 455555666777765554 4688899
Q ss_pred ecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCC-cCCHHHHHHHHHHHHHcCCcEEeC
Q 041113 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSV-IGGFENAGLIARWAQRHGKMAVVS 811 (983)
Q Consensus 733 EeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~-~GGl~~~~~~~~~A~~~gi~~~~~ 811 (983)
=-|..+. +..+...+.++|+.-|=.-.+ ......+.|++++.+-|.- .||+.-.+.+...- -+++++..
T Consensus 92 vsP~~~~-~vi~~a~~~~i~~iPG~~Tpt-------Ei~~a~~~Ga~~vKlFPa~~~gg~~~lk~l~~p~--p~~~~~pt 161 (212)
T PRK05718 92 VSPGLTP-PLLKAAQEGPIPLIPGVSTPS-------ELMLGMELGLRTFKFFPAEASGGVKMLKALAGPF--PDVRFCPT 161 (212)
T ss_pred ECCCCCH-HHHHHHHHcCCCEeCCCCCHH-------HHHHHHHCCCCEEEEccchhccCHHHHHHHhccC--CCCeEEEe
Confidence 9998855 666667778999885543222 2455566789988887754 57777666665553 35776644
Q ss_pred C
Q 041113 812 A 812 (983)
Q Consensus 812 ~ 812 (983)
+
T Consensus 162 G 162 (212)
T PRK05718 162 G 162 (212)
T ss_pred C
Confidence 4
|
|
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=80.34 E-value=4.3 Score=42.85 Aligned_cols=42 Identities=24% Similarity=0.496 Sum_probs=38.0
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~ 979 (983)
.|.||-.||++++...|..++..-...|-|+.+|.||.|.|+
T Consensus 83 ~P~vV~fhGY~g~~g~~~~~l~wa~~Gyavf~MdvRGQg~~~ 124 (321)
T COG3458 83 LPAVVQFHGYGGRGGEWHDMLHWAVAGYAVFVMDVRGQGSSS 124 (321)
T ss_pred cceEEEEeeccCCCCCccccccccccceeEEEEecccCCCcc
Confidence 689999999999999999888766778999999999999884
|
|
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=80.28 E-value=6.4 Score=47.34 Aligned_cols=107 Identities=9% Similarity=0.105 Sum_probs=73.0
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+.+++++.+|++ .--|+.-.++.+.++-. .+.|+++|.-.-. +.... .+. + .+
T Consensus 60 A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gia~A~~--~~~Pvl~i~g~~~-~~~~~------------~~~-~--~~ 121 (530)
T PRK07092 60 VVGMADGYAQATGNAAFVNLHSAAGVGNAMGNLFTAFK--NHTPLVITAGQQA-RSILP------------FEP-F--LA 121 (530)
T ss_pred HHHHHHHHHHHhCCceEEEeccCchHHHHHHHHHHHhh--cCCCEEEEecCCc-ccccC------------ccc-h--hc
Confidence 56788898888877877765 33344467899999987 8999987764321 11110 000 0 12
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+--...+|++++++.+.+.+|+. ..||+.|++..|-
T Consensus 122 ~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~ 172 (530)
T PRK07092 122 AVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDD 172 (530)
T ss_pred ccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHH
Confidence 356777777776677889999998888887753 2589999998773
|
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.04 E-value=7.1 Score=47.48 Aligned_cols=106 Identities=17% Similarity=0.043 Sum_probs=71.1
Q ss_pred hHHHHHhhhhccCceEEEEEcc-chhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGD-ISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GD-Gsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+-+++++.||+++= -|....++.+.+|.. .+.|+++|.-+-.....-+ +..+
T Consensus 53 A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi~~A~~--~~~Pvl~i~G~~~~~~~~~-----------------~~~Q 113 (574)
T PRK09124 53 AAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHR--NHVPVLAIAAHIPSSEIGS-----------------GYFQ 113 (574)
T ss_pred HHHHHHHHHHhhCCcEEEEECCCCCHHHHHHHHHHHhh--cCCCEEEEecCCccccCCC-----------------CCcc
Confidence 5567777777767888888632 345556788999887 8999988886433211100 0113
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhh----hccCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMS----QHLGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a----~~~~~p~lIeV~~~~ 452 (983)
..|...+.+..-....+|++++++...+++| ...+||+.|++..|-
T Consensus 114 ~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~Dv 163 (574)
T PRK09124 114 ETHPQELFRECSHYCELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGDV 163 (574)
T ss_pred ccChhhhcccceeeeEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhh
Confidence 3567777776666777899998876666655 445699999997663
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=80.03 E-value=16 Score=37.28 Aligned_cols=140 Identities=21% Similarity=0.264 Sum_probs=95.2
Q ss_pred CCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCce
Q 041113 652 SNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQY 731 (983)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~ 731 (983)
...++++..+.++.+.+.|++.+-+-.-. ..-.+.|+.+++.+ |+ +.|=|-.-.|.+++.+..+ .|-.|
T Consensus 15 r~~~~~~a~~~~~al~~gGi~~iEiT~~t----~~a~~~I~~l~~~~-p~--~~vGAGTV~~~e~a~~a~~----aGA~F 83 (196)
T PF01081_consen 15 RGDDPEDAVPIAEALIEGGIRAIEITLRT----PNALEAIEALRKEF-PD--LLVGAGTVLTAEQAEAAIA----AGAQF 83 (196)
T ss_dssp TTSSGGGHHHHHHHHHHTT--EEEEETTS----TTHHHHHHHHHHHH-TT--SEEEEES--SHHHHHHHHH----HT-SE
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEecCC----ccHHHHHHHHHHHC-CC--CeeEEEeccCHHHHHHHHH----cCCCE
Confidence 34678889999999999999999998754 23467888899998 55 5677778889998877654 57889
Q ss_pred eecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCC-CcCCHHHHHHHHHHHHHcCCcEEe
Q 041113 732 IEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPS-VIGGFENAGLIARWAQRHGKMAVV 810 (983)
Q Consensus 732 iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~-~~GGl~~~~~~~~~A~~~gi~~~~ 810 (983)
+=-|.- -+++.+..++.++|+.-|=.-.+ ......+.|++++.+=|. .+||..-.+.+..-. -+++++.
T Consensus 84 ivSP~~-~~~v~~~~~~~~i~~iPG~~Tpt-------Ei~~A~~~G~~~vK~FPA~~~GG~~~ik~l~~p~--p~~~~~p 153 (196)
T PF01081_consen 84 IVSPGF-DPEVIEYAREYGIPYIPGVMTPT-------EIMQALEAGADIVKLFPAGALGGPSYIKALRGPF--PDLPFMP 153 (196)
T ss_dssp EEESS---HHHHHHHHHHTSEEEEEESSHH-------HHHHHHHTT-SEEEETTTTTTTHHHHHHHHHTTT--TT-EEEE
T ss_pred EECCCC-CHHHHHHHHHcCCcccCCcCCHH-------HHHHHHHCCCCEEEEecchhcCcHHHHHHHhccC--CCCeEEE
Confidence 989987 56777777788999888765333 255556779999888775 468777665555432 2567654
Q ss_pred CC
Q 041113 811 SA 812 (983)
Q Consensus 811 ~~ 812 (983)
.+
T Consensus 154 tG 155 (196)
T PF01081_consen 154 TG 155 (196)
T ss_dssp BS
T ss_pred cC
Confidence 43
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 983 | ||||
| 3lq1_A | 578 | Crystal Structure Of 2-Succinyl-6-Hydroxy-2,4-Cyclo | 2e-41 | ||
| 2jla_A | 558 | Crystal Structure Of E.Coli Mend, 2-Succinyl-5-Enol | 1e-38 | ||
| 3flm_A | 556 | Crystal Structure Of Mend From E.Coli Length = 556 | 2e-38 | ||
| 2jlc_A | 577 | Crystal Structure Of E.Coli Mend, 2-Succinyl-5-Enol | 2e-38 | ||
| 2x7j_A | 604 | Structure Of The Menaquinone Biosynthesis Protein M | 1e-36 | ||
| 1jpm_A | 366 | L-ala-d/l-glu Epimerase Length = 366 | 1e-14 | ||
| 2pge_A | 377 | Crystal Structure Of Menc From Desulfotalea Psychro | 8e-14 | ||
| 2opj_A | 327 | Crystal Structure Of O-Succinylbenzoate Synthase Le | 9e-11 | ||
| 1sja_A | 368 | X-Ray Structure Of O-Succinylbenzoate Synthase Comp | 1e-10 | ||
| 4a6g_A | 368 | N-Acyl Amino Acid Racemase From Amycalotopsis Sp. T | 2e-10 | ||
| 1r6w_A | 322 | Crystal Structure Of The K133r Mutant Of O-Succinyl | 3e-10 | ||
| 1fhv_A | 323 | Crystal Structure Analysis Of O-Succinylbenzoate Sy | 3e-10 | ||
| 1fhu_A | 320 | Crystal Structure Analysis Of O-Succinylbenzoate Sy | 3e-10 | ||
| 3gc2_A | 323 | 1.85 Angstrom Crystal Structure Of O-Succinylbenzoa | 3e-10 | ||
| 3dfy_A | 345 | Crystal Structure Of Apo Dipeptide Epimerase From T | 5e-10 | ||
| 2ofj_A | 323 | Crystal Structure Of The E190a Mutant Of O-succinyl | 1e-09 | ||
| 3q45_A | 368 | Crystal Structure Of Dipeptide Epimerase From Cytop | 2e-09 | ||
| 2zad_A | 345 | Crystal Structure Of Muconate Cycloisomerase From T | 2e-09 | ||
| 3dg3_A | 367 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 5e-08 | ||
| 2qde_A | 397 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 1e-07 | ||
| 3cyj_A | 372 | Crystal Structure Of A Mandelate RacemaseMUCONATE L | 1e-07 | ||
| 3ozm_A | 389 | Crystal Structure Of Enolase Superfamily Member Fro | 2e-07 | ||
| 3h12_A | 397 | Crystal Structure Of Putative Mandelate Racemase Fr | 2e-07 | ||
| 3qld_A | 388 | Structure Of Probable Mandelate Racemase (Aalaa1dra | 2e-07 | ||
| 3ugv_A | 390 | Crystal Structure Of An Enolase From Alpha Pretobac | 4e-07 | ||
| 3op2_A | 397 | Crystal Structure Of Putative Mandelate Racemase Fr | 6e-07 | ||
| 3tj4_A | 372 | Crystal Structure Of An Enolase From Agrobacterium | 7e-07 | ||
| 2pp0_A | 398 | Crystal Structure Of L-TalarateGALACTARATE DEHYDRAT | 2e-06 | ||
| 3i4k_A | 383 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 2e-06 | ||
| 4it1_A | 446 | Crystal Structure Of Enolase Pfl01_3283 (target Efi | 2e-06 | ||
| 1nu5_A | 370 | Crystal Structure Of Pseudomonas Sp. P51 Chloromuco | 3e-06 | ||
| 1wuf_A | 393 | Crystal Structure Of Protein Gi:16801725, Member Of | 3e-06 | ||
| 2ovl_A | 371 | Crystal Structure Of A Racemase From Streptomyces C | 5e-06 | ||
| 2pp3_A | 398 | Crystal Structure Of L-TalarateGALACTARATE DEHYDRAT | 7e-06 | ||
| 2qdd_A | 378 | Crystal Structure Of A Member Of Enolase Superfamil | 1e-05 | ||
| 3h70_A | 343 | Crystal Structure Of O-Succinylbenzoic Acid Synthet | 1e-05 | ||
| 2p88_A | 369 | Crystal Structure Of N-succinyl Arg/lys Racemase Fr | 1e-05 | ||
| 2okt_A | 342 | Crystal Structure Of O-Succinylbenzoic Acid Synthet | 1e-05 | ||
| 3r0k_A | 379 | Crystal Structure Of Nysgrc Enolase Target 200555, | 2e-05 | ||
| 2fkp_A | 375 | The Mutant G127c-T313c Of Deinococcus Radiodurans N | 5e-05 | ||
| 3jva_A | 354 | Crystal Structure Of Dipeptide Epimerase From Enter | 6e-05 | ||
| 3tcs_A | 388 | Crystal Structure Of A Putative Racemase From Roseo | 9e-05 | ||
| 4ggb_A | 378 | Crystal Structure Of A Proposed Galactarolactone Cy | 2e-04 | ||
| 3ddm_A | 392 | Crystal Structure Of Mandelate RacemaseMUCONATE Lac | 2e-04 | ||
| 4h2h_A | 376 | Crystal Structure Of An Enolase (Mandalate Racemase | 2e-04 | ||
| 3vc5_A | 441 | Crystal Structure Of Enolase Tbis_1083(Target Efi-5 | 2e-04 | ||
| 3cb3_A | 393 | Crystal Structure Of L-talarate Dehydratase From Po | 2e-04 | ||
| 3my9_A | 377 | Crystal Structure Of A Muconate Cycloisomerase From | 2e-04 | ||
| 2pmq_A | 377 | Crystal Structure Of A Mandelate RacemaseMUCONATE L | 3e-04 | ||
| 2og9_A | 393 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 4e-04 | ||
| 2hne_A | 436 | Crystal Structure Of L-fuconate Dehydratase From Xa | 7e-04 | ||
| 2hxt_A | 441 | Crystal Structure Of L-Fuconate Dehydratase From Xa | 7e-04 | ||
| 3u9i_A | 393 | The Crystal Structure Of Mandelate RacemaseMUCONATE | 8e-04 |
| >pdb|3LQ1|A Chain A, Crystal Structure Of 2-Succinyl-6-Hydroxy-2,4-Cyclohexadiene 1-Carboxylic Acid Synthase2-Oxoglutarate Decarboxylase From Listeria Monocytogenes Str. 4b F2365 Length = 578 | Back alignment and structure |
|
| >pdb|2JLA|A Chain A, Crystal Structure Of E.Coli Mend, 2-Succinyl-5-Enolpyruvyl- 6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase - Semet Protein Length = 558 | Back alignment and structure |
|
| >pdb|3FLM|A Chain A, Crystal Structure Of Mend From E.Coli Length = 556 | Back alignment and structure |
|
| >pdb|2JLC|A Chain A, Crystal Structure Of E.Coli Mend, 2-Succinyl-5-Enolpyruvyl- 6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase - Native Protein Length = 577 | Back alignment and structure |
|
| >pdb|2X7J|A Chain A, Structure Of The Menaquinone Biosynthesis Protein Mend From Bacillus Subtilis Length = 604 | Back alignment and structure |
|
| >pdb|1JPM|A Chain A, L-ala-d/l-glu Epimerase Length = 366 | Back alignment and structure |
|
| >pdb|2PGE|A Chain A, Crystal Structure Of Menc From Desulfotalea Psychrophila Lsv54 Length = 377 | Back alignment and structure |
|
| >pdb|2OPJ|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase Length = 327 | Back alignment and structure |
|
| >pdb|1SJA|A Chain A, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed With N-Acetylmethionine Length = 368 | Back alignment and structure |
|
| >pdb|4A6G|A Chain A, N-Acyl Amino Acid Racemase From Amycalotopsis Sp. Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl Methionine Length = 368 | Back alignment and structure |
|
| >pdb|1R6W|A Chain A, Crystal Structure Of The K133r Mutant Of O-Succinylbenzoate Synthase (Osbs) From Escherichia Coli. Complex With Shchc Length = 322 | Back alignment and structure |
|
| >pdb|1FHV|A Chain A, Crystal Structure Analysis Of O-Succinylbenzoate Synthase From E. Coli Complexed With Mg And Osb Length = 323 | Back alignment and structure |
|
| >pdb|1FHU|A Chain A, Crystal Structure Analysis Of O-Succinylbenzoate Synthase From E. Coli Length = 320 | Back alignment and structure |
|
| >pdb|3GC2|A Chain A, 1.85 Angstrom Crystal Structure Of O-Succinylbenzoate Synthase From Salmonella Typhimurium In Complex With Succinic Acid Length = 323 | Back alignment and structure |
|
| >pdb|3DFY|A Chain A, Crystal Structure Of Apo Dipeptide Epimerase From Thermotoga Maritima Length = 345 | Back alignment and structure |
|
| >pdb|2OFJ|A Chain A, Crystal Structure Of The E190a Mutant Of O-succinylbenzoate Synthase From Escherichia Coli Length = 323 | Back alignment and structure |
|
| >pdb|3Q45|A Chain A, Crystal Structure Of Dipeptide Epimerase From Cytophaga Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val Length = 368 | Back alignment and structure |
|
| >pdb|2ZAD|A Chain A, Crystal Structure Of Muconate Cycloisomerase From Thermotoga Maritima Msb8 Length = 345 | Back alignment and structure |
|
| >pdb|3DG3|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Mucobacterium Smegmatis Length = 367 | Back alignment and structure |
|
| >pdb|2QDE|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1 Length = 397 | Back alignment and structure |
|
| >pdb|3CYJ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE LACTONIZING ENZYME- Like Protein From Rubrobacter Xylanophilus Length = 372 | Back alignment and structure |
|
| >pdb|3OZM|A Chain A, Crystal Structure Of Enolase Superfamily Member From Bordetella Bronchiseptica Complexed With Mg, M-Xylarate And L-Lyxarate Length = 389 | Back alignment and structure |
|
| >pdb|3H12|A Chain A, Crystal Structure Of Putative Mandelate Racemase From Bordetella Bronchiseptica Rb50 Length = 397 | Back alignment and structure |
|
| >pdb|3QLD|A Chain A, Structure Of Probable Mandelate Racemase (Aalaa1draft_2112) From Alicyclobacillus Acidocaldarius Length = 388 | Back alignment and structure |
|
| >pdb|3UGV|A Chain A, Crystal Structure Of An Enolase From Alpha Pretobacterium Bal199 (Efi Target Efi-501650) With Bound Mg Length = 390 | Back alignment and structure |
|
| >pdb|3OP2|A Chain A, Crystal Structure Of Putative Mandelate Racemase From Bordetella Bronchiseptica Rb50 Complexed With 2-OxoglutaratePHOSPHATE Length = 397 | Back alignment and structure |
|
| >pdb|3TJ4|A Chain A, Crystal Structure Of An Enolase From Agrobacterium Tumefaciens (Efi Target Efi-502087) No Mg Length = 372 | Back alignment and structure |
|
| >pdb|2PP0|A Chain A, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE FROM Salmonella Typhimurium Lt2 Length = 398 | Back alignment and structure |
|
| >pdb|3I4K|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Corynebacterium Glutamicum Length = 383 | Back alignment and structure |
|
| >pdb|4IT1|A Chain A, Crystal Structure Of Enolase Pfl01_3283 (target Efi-502286) From Pseudomonas Fluorescens Pf0-1 With Bound Magnesium, Potassium And Tartrate Length = 446 | Back alignment and structure |
|
| >pdb|1NU5|A Chain A, Crystal Structure Of Pseudomonas Sp. P51 Chloromuconate Lactonizing Enzyme Length = 370 | Back alignment and structure |
|
| >pdb|1WUF|A Chain A, Crystal Structure Of Protein Gi:16801725, Member Of Enolase Superfamily From Listeria Innocua Clip11262 Length = 393 | Back alignment and structure |
|
| >pdb|2OVL|A Chain A, Crystal Structure Of A Racemase From Streptomyces Coelicolor A3(2) Length = 371 | Back alignment and structure |
|
| >pdb|2PP3|A Chain A, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE MUTANT K197A Liganded With Mg And L-Glucarate Length = 398 | Back alignment and structure |
|
| >pdb|2QDD|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From Roseovarius Nubinhibens Ism Length = 378 | Back alignment and structure |
|
| >pdb|3H70|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid Synthetase From Staphylococcus Aureus Complexed With Mg In The Active Site Length = 343 | Back alignment and structure |
|
| >pdb|2P88|A Chain A, Crystal Structure Of N-succinyl Arg/lys Racemase From Bacillus Cereus Atcc 14579 Length = 369 | Back alignment and structure |
|
| >pdb|2OKT|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid Synthetase From Staphylococcus Aureus, Ligand-Free Form Length = 342 | Back alignment and structure |
|
| >pdb|3R0K|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A Putative Dipeptide Epimerase From Francisella Philomiragia : Tartrate Bound, No Mg Length = 379 | Back alignment and structure |
|
| >pdb|2FKP|A Chain A, The Mutant G127c-T313c Of Deinococcus Radiodurans N- Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|3JVA|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus Faecalis V583 Length = 354 | Back alignment and structure |
|
| >pdb|3TCS|A Chain A, Crystal Structure Of A Putative Racemase From Roseobacter Denitrificans Length = 388 | Back alignment and structure |
|
| >pdb|4GGB|A Chain A, Crystal Structure Of A Proposed Galactarolactone Cycloisomerase From Agrobacterium Tumefaciens, Target Efi-500704, With Bound Ca, Disordered Loops Length = 378 | Back alignment and structure |
|
| >pdb|3DDM|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE Lactonizing Enzyme From Bordetella Bronchiseptica Rb50 Length = 392 | Back alignment and structure |
|
| >pdb|4H2H|A Chain A, Crystal Structure Of An Enolase (Mandalate Racemase Subgroup, Target Efi-502101) From Pelagibaca Bermudensis Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine (Betonicine) Length = 376 | Back alignment and structure |
|
| >pdb|3VC5|A Chain A, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310) From Thermobispora Bispora Dsm 43833 Complexed With Phosphate Length = 441 | Back alignment and structure |
|
| >pdb|3CB3|A Chain A, Crystal Structure Of L-talarate Dehydratase From Polaromonas Sp. Js666 Complexed With Mg And L-glucarate Length = 393 | Back alignment and structure |
|
| >pdb|3MY9|A Chain A, Crystal Structure Of A Muconate Cycloisomerase From Azorhizobium Caulinodans Length = 377 | Back alignment and structure |
|
| >pdb|2PMQ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE LACTONIZING ENZYME From Roseovarius Sp. Htcc2601 Length = 377 | Back alignment and structure |
|
| >pdb|2OG9|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME From Polaromonas Sp. Js666 Length = 393 | Back alignment and structure |
|
| >pdb|2HNE|A Chain A, Crystal Structure Of L-fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 436 | Back alignment and structure |
|
| >pdb|2HXT|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From Xanthomonas Campestris Liganded With Mg++ And D-Erythronohydroxamate Length = 441 | Back alignment and structure |
|
| >pdb|3U9I|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING Enzyme From Roseiflexus Sp. Length = 393 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 983 | |||
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 1e-103 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 1e-101 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 2e-97 | |
| 1r6w_A | 322 | OSB synthase, O-succinylbenzoate synthase, OSBS; e | 5e-56 | |
| 2pge_A | 377 | MENC; OSBS, NYSGXRC, PSI-II, structural genomics, | 2e-52 | |
| 2ozt_A | 332 | TLR1174 protein; structural genomics, O-succinylbe | 3e-51 | |
| 3caw_A | 330 | O-succinylbenzoate synthase; structural genomics, | 1e-43 | |
| 2okt_A | 342 | OSB synthetase, O-succinylbenzoic acid synthetase; | 1e-43 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 5e-39 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 3e-38 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 1e-37 | |
| 1wue_A | 386 | Mandelate racemase/muconate lactonizing enzyme FA | 3e-37 | |
| 3qld_A | 388 | Mandelate racemase/muconate lactonizing protein; s | 8e-37 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 2e-36 | |
| 1wuf_A | 393 | Hypothetical protein LIN2664; structural genomics, | 2e-36 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 2e-36 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 2e-36 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 2e-36 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 4e-36 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 4e-36 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 2e-35 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 5e-35 | |
| 2opj_A | 327 | O-succinylbenzoate-COA synthase; TIM barrel, struc | 3e-34 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 4e-34 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 1e-33 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 1e-33 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 2e-33 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 2e-33 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 2e-33 | |
| 2pmq_A | 377 | Mandelate racemase/muconate lactonizing enzyme; st | 4e-33 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 7e-33 | |
| 3s5s_A | 389 | Mandelate racemase/muconate lactonizing enzyme FA | 7e-33 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 8e-33 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 1e-32 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 1e-32 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 2e-32 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 4e-32 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 4e-32 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 6e-32 | |
| 4e8g_A | 391 | Enolase, mandelate racemase/muconate lactonizing e | 2e-31 | |
| 1jpd_X | 324 | L-Ala-D/L-Glu epimerase; enolase superfamily, muco | 3e-31 | |
| 3ik4_A | 365 | Mandelate racemase/muconate lactonizing protein; s | 2e-30 | |
| 3u9i_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 8e-29 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 1e-27 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 2e-26 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 2e-25 | |
| 3ijl_A | 338 | Muconate cycloisomerase; enolase superfamily, dipe | 3e-25 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 4e-24 | |
| 3vc5_A | 441 | Mandelate racemase/muconate lactonizing protein; d | 2e-22 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 3e-22 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 5e-22 | |
| 3no1_A | 398 | Isomerase, mandelate racemase/muconate lactonizing | 7e-22 | |
| 3vdg_A | 445 | Probable glucarate dehydratase; enolase, magnesium | 4e-21 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 4e-21 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 7e-21 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 9e-21 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 1e-20 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 4e-20 | |
| 1kcz_A | 413 | Beta-methylaspartase; beta zigzag, alpha/beta-barr | 1e-19 | |
| 3va8_A | 445 | Probable dehydratase; enolase, magnesium binding s | 2e-19 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 4e-19 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 7e-19 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 9e-19 | |
| 3mzn_A | 450 | Glucarate dehydratase; lyase, structural genomics, | 1e-18 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 1e-18 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 2e-18 | |
| 3cyj_A | 372 | Mandelate racemase/muconate lactonizing enzyme-LI | 2e-18 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 3e-18 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 3e-18 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 1e-17 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 2e-17 | |
| 2ppg_A | 399 | Putative isomerase; structural genomics, PSI-2, pr | 2e-17 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 2e-17 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 3e-17 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 7e-17 | |
| 3p0w_A | 470 | Mandelate racemase/muconate lactonizing protein; s | 2e-16 | |
| 4g8t_A | 464 | Glucarate dehydratase; enolase, enzyme function IN | 5e-16 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 8e-16 | |
| 3pfr_A | 455 | Mandelate racemase/muconate lactonizing protein; e | 1e-15 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 2e-15 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 2e-15 | |
| 1kko_A | 413 | 3-methylaspartate ammonia-lyase; enolase superfami | 3e-15 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 3e-15 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 1e-14 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 1e-14 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 2e-14 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 4e-14 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 4e-14 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 5e-14 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 2e-13 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 5e-13 | |
| 3ekg_A | 404 | Mandelate racemase/muconate lactonizing enzyme; st | 6e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-04 | |
| 2p3z_A | 415 | L-rhamnonate dehydratase; enolase, structural geno | 9e-13 | |
| 3fxg_A | 455 | Rhamnonate dehydratase; structural gemomics, enola | 1e-12 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 1e-12 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 1e-12 | |
| 4dxk_A | 400 | Mandelate racemase / muconate lactonizing enzyme p | 2e-12 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 3e-12 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 5e-12 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 1e-11 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 1e-10 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 2e-10 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 3e-10 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 4e-10 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 5e-10 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 1e-09 | |
| 4e4f_A | 426 | Mannonate dehydratase; magnesium binding, enzyme f | 1e-09 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 3e-09 | |
| 4a35_A | 441 | Mitochondrial enolase superfamily member 1; isomer | 6e-09 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 2e-07 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 2e-07 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 2e-07 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 3e-07 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 7e-07 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 1e-06 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 2e-06 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 2e-06 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 3e-06 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 4e-06 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 4e-06 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 4e-06 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 5e-06 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 6e-06 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 1e-05 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 2e-05 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 2e-05 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 2e-05 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 3e-05 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 3e-05 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 3e-05 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 3e-05 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 4e-05 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 4e-05 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 8e-05 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 1e-04 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 1e-04 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 2e-04 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 2e-04 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 2e-04 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 2e-04 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 2e-04 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 3e-04 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 3e-04 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 3e-04 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 5e-04 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 6e-04 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 6e-04 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 9e-04 |
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Length = 578 | Back alignment and structure |
|---|
Score = 332 bits (853), Expect = e-103
Identities = 120/470 (25%), Positives = 211/470 (44%), Gaps = 44/470 (9%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYI 60
AV A +P GPVH+N P REPL L+ + + +I
Sbjct: 151 YAKWHGSRAVDIAMKTPRGPVHLNFPLREPLVPI--------LEPSPFTATGKKHHHVHI 202
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
H S + +++ G KG+ +VG + ++ ++ LA+ + WP++AD
Sbjct: 203 YYTHEVLDDS----SIQKMVTECTG-KKGVFVVGPIDKKELEQPMVDLAKKLGWPILADP 257
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSGLR + + +D D L + D + +V+I+ GS SK + +
Sbjct: 258 LSGLRS--------YGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSMPVSKPLKNWL 309
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLK-VQVPHRSSKWCSFLRALD 239
E+ + +VD DP +VT I +D + + + + + W + + +
Sbjct: 310 EQLSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMPDDAKDAAWLNGWTSYN 369
Query: 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHT 299
+ + ++ L E + EL R L + LF+GNSM IRD+D Y
Sbjct: 370 KVAREIVLAEMANTTILEEGKIVAELRRLLPDKAGLFIGNSMPIRDVDTYFSQI------ 423
Query: 300 VADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGL 359
+ I++ NRGA+GIDG++S+A+G +V + + ++GD+SF HD NGL
Sbjct: 424 -----------DKKIKMLANRGANGIDGVVSSALGASVV-FQPMFLLIGDLSFYHDMNGL 471
Query: 360 AILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGL 419
+ K+ + + ++++NN GG IFS LP A+ EP+ + F T+ + + +
Sbjct: 472 LMAKKY--KMNLTIVIVNNDGGGIFSFLPQAN--EPKYFESLFGTSTELDFRFAAAFYDA 527
Query: 420 NHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQS 469
++ + K+ ELEEA+ + + +IEV++ N H L
Sbjct: 528 DYHEAKSVDELEEAIDKASYHKGLDIIEVKTNRHENKANHQALEGHHHHH 577
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Length = 604 | Back alignment and structure |
|---|
Score = 327 bits (841), Expect = e-101
Identities = 117/469 (24%), Positives = 207/469 (44%), Gaps = 45/469 (9%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
I T A A P GPVH+N P REPL P + S++ T+ +
Sbjct: 172 IRTLASRAAGEAQKRPMGPVHVNVPLREPLM--PDLSDEPFGRMRTGRHVSVKTGTQSVD 229
Query: 62 VQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADIL 121
+ +++V E++ KG+++ G +H++ + ++ L++ +++P++AD L
Sbjct: 230 RE-----------SLSDVAEMLAEAEKGMIVCGELHSDADKENIIALSKALQYPILADPL 278
Query: 122 SGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIE 181
S LR +D D L + +K ++ DV+I+ G SK + ++
Sbjct: 279 SNLRN--------GVHDKSTVIDAYDSFLKDDELKRKLRPDVVIRFGPMPVSKPVFLWLK 330
Query: 182 ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-RSSKWCSFLRALDM 240
+ I++D DP+ + H I F + ++ RSS+W + ++
Sbjct: 331 DDPTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLTAATRSSEWLEKWQFVNG 390
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
+ I ++ E ++ L + NS+LFVGNSM IRD+D +
Sbjct: 391 RFREHLQ-TISSEDVSFEGNLYRILQHLVPENSSLFVGNSMPIRDVDTFFE--------- 440
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
+ R+ NRGA+GIDG++S+A+G G V V+GD+SF HD NGL
Sbjct: 441 --------KQDRPFRIYSNRGANGIDGVVSSAMGVCEGTKAPVTLVIGDLSFYHDLNGLL 492
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
K+ P+ ++++NN GG IFS LP A E + F T + ++ +G
Sbjct: 493 AAKKL--GIPLTVILVNNDGGGIFSFLPQAS--EKTHFEDLFGTPTGLDFKHAAALYGGT 548
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFH-SMLRKFARQ 468
+ + E + A + +IE+++ + H ML + R+
Sbjct: 549 YSCPASWDEFKTAYAPQADKPGLHLIEIKTDRQSRVQLHRDMLNEAVRE 597
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Length = 556 | Back alignment and structure |
|---|
Score = 317 bits (813), Expect = 2e-97
Identities = 119/458 (25%), Positives = 187/458 (40%), Gaps = 58/458 (12%)
Query: 8 SAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHA 67
+ H + G VHINCPF EPL S + L W +P+ + S
Sbjct: 151 TIDHALGTLHAGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPRLESEK 210
Query: 68 CKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLR 127
+ K ++V + +E V A+ + WP++ D+LS
Sbjct: 211 -----------QRDWFFWRQKRGVVVAGRMSAEEGKKVALWAQTLGWPLIGDVLSQTGQ- 258
Query: 128 KLLASFLETEQNILFLDHLDHALL-SESVKDWIQFDVIIQIGSRITSKRISQMIEECFPC 186
L D L +++ + Q +++Q+GS +T KR+ Q C P
Sbjct: 259 --------------PLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQWQASCEPE 304
Query: 187 TYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEI 246
Y +VD+ R DP+H R+ + I + L++ + WC + L +
Sbjct: 305 EYWIVDDIEGRLDPAHHRGRRLIANIADW----LELHPAEKRQPWCVEIPRLA---EQAM 357
Query: 247 SFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLN 306
I + E +AH + L LFVGNS+ +R +D +
Sbjct: 358 QAVIARRDAFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQ--------------- 402
Query: 307 SEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRM 366
V NRGASGIDGLLSTA G K L +VGD+S L+D N LA+L+Q
Sbjct: 403 ---LPAGYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQV- 458
Query: 367 KRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKT 426
P++++V+NN+GG IFSLLP ++++ N+ ++ L + + +
Sbjct: 459 -SAPLVLIVVNNNGGQIFSLLPTPQSE----RERFYLMPQNVHFEHAAAMFELKYHRPQN 513
Query: 427 KVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRK 464
ELE A + + T VIE+ A L
Sbjct: 514 WQELETAFADAWRTPTTTVIEMVVNDTDGAQTLQQLLA 551
|
| >1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A* Length = 322 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 5e-56
Identities = 71/378 (18%), Positives = 136/378 (35%), Gaps = 78/378 (20%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL-EIHKE 552
+ + ++I + A R R+G + L E G+GE++PL +E
Sbjct: 2 HMRSAQVYRWQIPMDAGVVLRD----RRLKTRDGLYVCLR-EGEREGWGEISPLPGFSQE 56
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAIL 612
+A+ L ++ +W+ G PSV G+ A+
Sbjct: 57 TWEEAQSVLLAWVN-------------------NWL---AGDCELPQMPSVAFGVSCALA 94
Query: 613 NAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFT 672
++ + +C P ++ G
Sbjct: 95 ELTDTLPQAANY-----------------RAAPLCNG-----DPDDLI--LKLADMPGEK 130
Query: 673 AIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC---DL 729
K++V + ++D V+ + + + + LR+DANR WT + +F + +
Sbjct: 131 VAKVRVGLY-EAVRDGMVVNLLLEAIPD-LHLRLDANRAWTPLKGQQFAKYVNPDYRDRI 188
Query: 730 QYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIG 789
++EEP + +D + E+G+ +A DE++ + A G+ A+VIKP++ G
Sbjct: 189 AFLEEPCKTRDDSRAFARETGIAIAWDESLRE-PDFAF-----VAEEGVRAVVIKPTLTG 242
Query: 790 GFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPV 849
E + A G AV+S++ ES LGL+ +++L P
Sbjct: 243 SLEKVREQVQAAHALGLTAVISSSIESSLGLTQLARIAAWLT---------------PDT 287
Query: 850 AQGLGTYQWLKEDVTTDP 867
GL T ++
Sbjct: 288 IPGLDTLDLMQAQQVRRW 305
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} Length = 377 | Back alignment and structure |
|---|
Score = 187 bits (477), Expect = 2e-52
Identities = 82/386 (21%), Positives = 150/386 (38%), Gaps = 51/386 (13%)
Query: 497 RMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLL 555
+ Y + P +S + + + L DG G GEV+ + + +
Sbjct: 6 ELSYRRSDLIFKRPAGTSR----GVLTSKPTWFVRLD-IDGHGGQGEVSLIPGLSLDPEE 60
Query: 556 DAEEQLRFLLHFMTGAKI---SYFLPLLKGSFSSWIWSTL----------GIPACEIFPS 602
+L L + + FL G+ S S L + FP+
Sbjct: 61 QIGRELDLLARRLRAEEPIRLRQFLAERGGADFSDYRSVLTDIAGILDSWQVSTDGRFPA 120
Query: 603 VRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASI 662
+R LEMA+L+ ++ F + ++ I + LI +
Sbjct: 121 LRFALEMALLDLLSGGRQEWF----------ASDFTRGEKRIPVNGLIWMG-EAAFMQEQ 169
Query: 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGH-RIELRVDANRNWTYQEALEFG 721
+ EG+ +KLK+ D K+ ++ +R+ ++E+RVDAN ++ A +
Sbjct: 170 IEAKLAEGYGCLKLKIGAI-DFDKECALLAGIRESFSPQQLEIRVDANGAFSPANAPQRL 228
Query: 722 FLIKDCDLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIV 779
+ L IE+P+ ++ C S L +ALDE + + + + P
Sbjct: 229 KRLSQFHLHSIEQPIRQHQWSEMAALCANSPLAIALDEELIGLGAEQRSAMLDAIRPQY- 287
Query: 780 AIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCK 839
I++KPS++GGF AG A+ G +++A ES LGL+A +++ +
Sbjct: 288 -IILKPSLLGGFHYAGQWIELARERGIGFWITSALESNLGLAAIAQWTALYQ-------- 338
Query: 840 VMNRELCPPVAQGLGTYQWLKEDVTT 865
P + QGLGT Q ++ +
Sbjct: 339 -------PTMPQGLGTGQLYTNNLPS 357
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A Length = 332 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 3e-51
Identities = 68/376 (18%), Positives = 121/376 (32%), Gaps = 74/376 (19%)
Query: 497 RMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL-EIHKENLL 555
R ++ +Y L P T++ R G L L E G VGYGE+APL E L
Sbjct: 4 RWQWRIYEEPLQEPLTTAQ----GVWRSRSGIYLRLEDEQGQVGYGEIAPLPGWGSETLN 59
Query: 556 DAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAI 615
+ L +T ++ E P+ + G A
Sbjct: 60 ADIALCQQLPGHLTPEIMA--------------------TIPEALPAAQFGFATA----- 94
Query: 616 AVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIK 675
+ + R ICAL+ S + G T K
Sbjct: 95 --------------WQSVGR-LPYRVRPWPICALLGS---GQAALEQWQQSWQRGQTTFK 136
Query: 676 LKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD---CDLQYI 732
KV P ++ +++ + + +LR+DAN +W A + + ++Y+
Sbjct: 137 WKVGVM-SPEEEQAILKALLAALPPGAKLRLDANGSWDRATANRWFAWLDRHGNGKIEYV 195
Query: 733 EEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGG 790
E+P+ + ++ + +ALDE++ + VIK ++ G
Sbjct: 196 EQPLPPDQWQALLSLAQTVTTAIALDESV----VSAAEVQRWVDRGWPGFFVIKTALFGD 251
Query: 791 FENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVA 850
++ + + V S+A E + +A + P A
Sbjct: 252 PDSL-SLLLRRGLEPQRLVFSSALEGAIARTAIFHLLETWQ---------------PCHA 295
Query: 851 QGLGTYQWLKEDVTTD 866
G G +W + T
Sbjct: 296 LGFGVDRWRSAPLLTT 311
|
| >3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2, NYSGXRC, target 9462A, protein structure initiative; 1.87A {Bdellovibrio bacteriovorus HD100} Length = 330 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 1e-43
Identities = 58/378 (15%), Positives = 124/378 (32%), Gaps = 84/378 (22%)
Query: 497 RMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL-EIHKENLL 555
++ YS Y ++ ++ + REG +L + DG G+ ++ P E+ +L
Sbjct: 3 KISYSPYTLKPVQSLNAA-----TAATAREGVLLKVEWNDGLYGFADLHPWPELGDLSLE 57
Query: 556 DAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAI 615
+ LR + + + +A +A+
Sbjct: 58 EQLSDLR---------------------------------MGRMTTQIEQSIWLARRDAL 84
Query: 616 AVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIK 675
K + IK L+ ++ + L EG+ +K
Sbjct: 85 LRKEKKHVFDGG--------------EKIKNNYLLSHF-QDLKPGFLDG-LKNEGYNTVK 128
Query: 676 LKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD---CDLQYI 732
+K+ R D K+A+++ + + +R+D N ++Q +F + ++Y+
Sbjct: 129 VKMGR--DLQKEADMLTHIA---ASGMRMRLDFNALGSWQTFEKFMVNLPLTVRPLIEYV 183
Query: 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFE 792
E+P + +ALD DK K A IVIKP+ +
Sbjct: 184 EDPFPFDFHAWGEA-RKLAKIALDNQYDKV-PWG-----KIASAPFDVIVIKPAKTDVDK 236
Query: 793 NAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQG 852
Q+ V++ + +G+ + + L+ + + + G
Sbjct: 237 ----AVAQCQKWNLKLAVTSYMDHPVGVVHAVGVAMELKDKYGDM----------ILESG 282
Query: 853 LGTYQWLKEDVTTDPISI 870
T++ + D +S
Sbjct: 283 CLTHRLYQMDSFAAELST 300
|
| >2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A Length = 342 | Back alignment and structure |
|---|
Score = 161 bits (408), Expect = 1e-43
Identities = 59/380 (15%), Positives = 123/380 (32%), Gaps = 71/380 (18%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IH 550
K+ + + Y + + + R+ + L + G+ +GE +
Sbjct: 3 KLTALHFYKYSEPFKSQIVTPK----VTLTHRDCLFIELIDDKGNAYFGECNAFQTDWYD 58
Query: 551 KENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMA 610
E + + + +F SF ++ + + + E P+ R + MA
Sbjct: 59 HETIASVKHVIE-----------QWFEDNRNKSFETYEAALKLVDSLENTPAARATIVMA 107
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEG 670
+ V S ++++ L
Sbjct: 108 LYQMFHVLPSFSVAYGATASGLSNKQLES--------------------------LKATK 141
Query: 671 FTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQ 730
T IKLK + I+ +R+ + +L +DAN + Q+ + L +
Sbjct: 142 PTRIKLKWTPQ-----IMHQIRVLRE-LDFHFQLVIDANESLDRQDFTQLQLL-AREQVL 194
Query: 731 YIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGG 790
YIEEP ++ + + + + P+ALDE D +N++E Y + +V+KP +GG
Sbjct: 195 YIEEPFKDISMLDEVADGTIPPIALDEKATSLL-DIINLIELYN---VKVVVLKPFRLGG 250
Query: 791 FENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVA 850
+ + HG V+ +E GL + + +
Sbjct: 251 IDKVQTAIDTLKSHGAKVVIGGMYEYGLSRYFTAMLARKGDY----------------PG 294
Query: 851 QGLGTYQWLKEDVTTDPISI 870
+ ++DV +
Sbjct: 295 DVTPAGYYFEQDVVAHSGIL 314
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A Length = 366 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 5e-39
Identities = 87/385 (22%), Positives = 156/385 (40%), Gaps = 57/385 (14%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
KI R+E S + L P ++ R+ + E I+ + + G+VG+GE P I +
Sbjct: 2 KIIRIETSRIAVPLTKPFKTAL----RTVYTAESVIVRITYDSGAVGWGEAPPTLVITGD 57
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEM 609
++ E + P L G S + + I + S + +EM
Sbjct: 58 SMDSIESAIH-----------HVLKPALLGKSLAGYEAILHDIQ-HLLTGNMSAKAAVEM 105
Query: 610 AILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
A+ + A G LY + + +++ + S SP E+A+ A +++
Sbjct: 106 ALYDGWAQMCGLP----LYQM------LGGYRDTLETDYTV-SVNSPEEMAADAENYLKQ 154
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC-- 727
GF +K+KV + D D IQE+RK+VG ++LR+DAN+ W +EA+ ++D
Sbjct: 155 GFQTLKIKVGKD-DIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGL 213
Query: 728 DLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIV-AIVIK 784
++ +E+PV + + K + + P+ DE++ + I IK
Sbjct: 214 GIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFT-----PRQAFEVLQTRSADLINIK 268
Query: 785 PSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSS------YLELQNAYLC 838
GG A I A+ G +V + E+ LG++A F++ + +
Sbjct: 269 LMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLML 328
Query: 839 K---------VMNRELCPPVAQGLG 854
K + P GLG
Sbjct: 329 KTDVFNGGITYSGSTISMPGKPGLG 353
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} Length = 381 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 3e-38
Identities = 70/387 (18%), Positives = 133/387 (34%), Gaps = 57/387 (14%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEI---H 550
+ ++E + + P S + C+ I+ L DG G GE +
Sbjct: 6 TVEQIESWIVDVPTIRPHKLSM----TTMGCQSLVIVRLTRSDGICGIGEATTIGGLSYG 61
Query: 551 KENLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGL 607
E+ + Y PLLKG + + + + A + + +
Sbjct: 62 VESPEAISSAIT-----------HYLTPLLKGQPADNLNALTARMN-GAIKGNTFAKSAI 109
Query: 608 EMAILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTL 666
E A+L+A G + L + T++ + + S + ++A L
Sbjct: 110 ETALLDAQGKALGLP----VSAL------LGGALQTALPVLWTLASGDTAKDIAEGEKLL 159
Query: 667 VEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD 726
E A KLK+ R + D + + + +G R +RVD N+ W + +
Sbjct: 160 AEGRHRAFKLKIGAR-ELATDLRHTRAIVEALGDRASIRVDVNQAWDAATGAKGCRELAA 218
Query: 727 CDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-I 783
+ IE+PV + +++ ++ + DE + + A G +
Sbjct: 219 MGVDLIEQPVSAHDNAALVRLSQQIETAILADEAVATAY-----DGYQLAQQGFTGAYAL 273
Query: 784 KPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNR 843
K + GG + +AR AQ G E +G A + S L +
Sbjct: 274 KIAKAGGPNSVLALARVAQAAGIGLYGGTMLEGTVGTVASLHAWSTLP--LQWGT----- 326
Query: 844 ELCPPVAQGLGTYQWLKEDVTTDPISI 870
E+ P LK+D+ + P++
Sbjct: 327 EMFGP--------LLLKDDIVSVPLTF 345
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* Length = 354 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 1e-37
Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 62/389 (15%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
KI ++ +I+L T + + + I+ + E+G VGYGE P I E
Sbjct: 2 KIKQVHVRASKIKLKETFTIAL----GTIESADSAIVEIETEEGLVGYGEGGPGIFITGE 57
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEM 609
L E + F + G + + I + P+ + +++
Sbjct: 58 TLAGTLETIE------------LFGQAIIGLNPFNIEKIHEVMD-KISAFAPAAKAAIDI 104
Query: 610 AILNAIAVKHGSSFLNILYPL--TEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLV 667
A + + K LY L ++ I+ + I P +A A V
Sbjct: 105 ACYDLMGQKAQLP----LYQLLGGYDNQVITDITLGID---------EPNVMAQKAVEKV 151
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727
+ GF +K+KV D ++ +R+ VG I+LR+DAN+ WT ++A++ + D
Sbjct: 152 KLGFDTLKIKVGT--GIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADY 209
Query: 728 DLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKP 785
++ +E+PV ++ E + + + DE+ D + LE + I IK
Sbjct: 210 QIELVEQPVKRRDLEGLKYVTSQVNTTIMADESC----FDAQDALELVKKGTVDVINIKL 265
Query: 786 SVIGGFENAGLIARWAQRHG-KMAVVSAAFESGLGLSA------------YIIFSSYLEL 832
GG A I + + G + + A E+ +G++A + L
Sbjct: 266 MKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAAAQKNITRADLDATFGL 325
Query: 833 QNAYLCKVM----NRELCPPVAQGLG-TY 856
+ A + + L A GLG ++
Sbjct: 326 ETAPVTGGVSLEAKPLLELGEAAGLGISH 354
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 3e-37
Identities = 74/386 (19%), Positives = 136/386 (35%), Gaps = 61/386 (15%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IH 550
I +E R+ L P +SY + + + E G+ G+GE+ E
Sbjct: 21 NIQSIETYQVRLPLKTPFVTSY----GRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYV 76
Query: 551 KENLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGL 607
+E L+ ++ + +PLL + + + + + L
Sbjct: 77 QETLVTERFIIQ-----------QHLIPLLLTEAIEQPQEVSTIFE--EVKGHWMGKAAL 123
Query: 608 EMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLV 667
E AI + A + S L I + + + ++ V
Sbjct: 124 ETAIWDLYAKRQQKS----LTEF------FGPTRRKIPVGISLGIQEDLPQLLKQVQLAV 173
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727
E+G+ +KLK+ P D E + +R+ + + L VDAN +T + + L
Sbjct: 174 EKGYQRVKLKI----RPGYDVEPVALIRQHFPN-LPLMVDANSAYTLADLPQLQRL-DHY 227
Query: 728 DLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IK 784
L IE+P + D + E + LDE I L + G + +K
Sbjct: 228 QLAMIEQPFAADDFLDHAQLQRELKTRICLDENIRS-----LKDCQVALALGSCRSINLK 282
Query: 785 PSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRE 844
+GG A IA + Q + + + FESG+G + + F+S +
Sbjct: 283 IPRVGGIHEALKIAAFCQENDLLVWLGGMFESGVGRALNLQFASQPTFSFPG-------D 335
Query: 845 LCPPVAQGLGTYQWLKEDVTTDPISI 870
+ T ++ ED+ T+P +
Sbjct: 336 IS-------ATERYFYEDIITEPFIL 354
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} Length = 388 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 8e-37
Identities = 69/382 (18%), Positives = 135/382 (35%), Gaps = 40/382 (10%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
+ + L P +++ ++ ++ L DG G+ E L
Sbjct: 2 SLQTCVLHRLSLPLKFPMRTAH----GHIREKQAILVQLVDADGIEGWSECVALAEPTYT 57
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILN 613
+ L+H + + + + +EMA+ +
Sbjct: 58 EECTDTAWVMLVHHLVPRFARWLRAASQDQDVDPRTVCEALRDVRGNRMSVAAIEMAVWD 117
Query: 614 AIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTA 673
A + G L L + +++ A + ++S + VE+GF
Sbjct: 118 WYAARTGQP----LVGL------LGGGRDRVEVSATLGMSESLDVLIQSVDAAVEQGFRR 167
Query: 674 IKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIE 733
+KLK+A +D I+ VR + + + DAN ++ ++A L DLQ+IE
Sbjct: 168 VKLKIAPG----RDRAAIKAVRLRYPD-LAIAADANGSYRPEDAPVLRQL-DAYDLQFIE 221
Query: 734 EPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGF 791
+P+ + D+ K PV LDE++ + + + +KP +GGF
Sbjct: 222 QPLPEDDWFDLAKLQASLRTPVCLDESV----RSVRELKLTARLGAARVLNVKPGRLGGF 277
Query: 792 ENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQ 851
A G A V +E+G+G +I ++ + Y +L P
Sbjct: 278 GATLRALDVAGEAGMAAWVGGMYETGVGRVHGLIAAALPLM--RYAT-----DLGPS--- 327
Query: 852 GLGTYQWLKEDVTTDPISICHN 873
++ ++DV +PI+
Sbjct: 328 ----DRYFEQDVLKEPIAFVEP 345
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A Length = 356 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-36
Identities = 76/383 (19%), Positives = 137/383 (35%), Gaps = 55/383 (14%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
KI ++ L P ++ RS + I+ + DG +G G +P + E
Sbjct: 2 KIADIQVRTEHFPLTRPYRIAF----RSIEEIDNLIVEIRTADGLLGLGAASPERHVTGE 57
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEM 609
L L L L G + + L P+ R L+M
Sbjct: 58 TLEACHAALD-----------HDRLGWLMGRDIRTLPRLCRELA-ERLPAAPAARAALDM 105
Query: 610 AILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
A+ + +A G L + + TS+ I K E + A +
Sbjct: 106 ALHDLVAQCLGLP----LVEI--LGRAHDSLPTSVTI-----GIKPVEETLAEAREHLAL 154
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
GF +K+K+ D +D E ++ + + + R +RVD N+++ L L+++ +
Sbjct: 155 GFRVLKVKLCG--DEEQDFERLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGI 212
Query: 730 QYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPS 786
++IE+P + + + +A DE++ P + A P I IK
Sbjct: 213 EFIEQPFPAGRTDWLRALPKAIRRRIAADESL----LGPADAFALAAPPAACGIFNIKLM 268
Query: 787 VIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSS------YLELQNAYLCK- 839
GG A IA A+ G + ES + ++A + + YL+L ++
Sbjct: 269 KCGGLAPARRIATIAETAGIDLMWGCMDESRISIAAALHAALACPATRYLDLDGSFDLAR 328
Query: 840 --------VMNRELCPPVAQGLG 854
+ + L GLG
Sbjct: 329 DVAEGGFILEDGRLRVTERPGLG 351
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 Length = 393 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 2e-36
Identities = 73/383 (19%), Positives = 140/383 (36%), Gaps = 55/383 (14%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
+ + L AP +SY ++ +I+ L E+G GYGE+ +
Sbjct: 21 YFQKARLIHAELPLLAPFKTSY----GELKSKDFYIIELINEEGIHGYGELEAFPLPDYT 76
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEMA 610
+ + LPLL I + + +E+A
Sbjct: 77 EETLSSAILIIKE--------QLLPLLAQRKIRKPEEIQELFS--WIQGNEMAKAAVELA 126
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEG 670
+ +A A S L + I SIK+ I ++ + + V++G
Sbjct: 127 VWDAFAKMEKRS----LAKM------IGATKESIKVGVSIGLQQNVETLLQLVNQYVDQG 176
Query: 671 FTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQ 730
+ +KLK+A KD + ++ VRK ++ L DAN + ++ L L DL+
Sbjct: 177 YERVKLKIAPN----KDIQFVEAVRKSFP-KLSLMADANSAYNREDFLLLKEL-DQYDLE 230
Query: 731 YIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPSV 787
IE+P ++ D ++ + LDE I + +E+ G + +K +
Sbjct: 231 MIEQPFGTKDFVDHAWLQKQLKTRICLDENIRSVK-----DVEQAHSIGSCRAINLKLAR 285
Query: 788 IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCP 847
+GG +A IA + + + E+G+G + I ++ E V ++
Sbjct: 286 VGGMSSALKIAEYCALNEILVWCGGMLEAGVGRAHNIALAARNEF-------VFPGDI-- 336
Query: 848 PVAQGLGTYQWLKEDVTTDPISI 870
+ ++ ED+ T +
Sbjct: 337 -----SASNRFFAEDIVTPAFEL 354
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 Length = 370 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-36
Identities = 78/384 (20%), Positives = 141/384 (36%), Gaps = 51/384 (13%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
KI + ++ + P S+ + + I+ + G VG GE +
Sbjct: 2 KIEAISTTIVDVPTRRPLQMSF----TTVHKQSYVIVQVK-AGGLVGIGEGGSVGGPTWG 56
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEMA 610
AE + + Y PLL G S+ + A S + +++A
Sbjct: 57 SESAETIKVIIDN--------YLAPLLVGKDASNLSQARVLMD-RAVTGNLSAKAAIDIA 107
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
+ + A S + L I TSI I + S + ++ S +
Sbjct: 108 LHDLKARALNLS----IADL------IGGTMRTSIPIAWTLASGDTARDIDSALEMIETR 157
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
K+K+ R P +D E I+ + K VG R +RVD N+ W Q A + +++ +
Sbjct: 158 RHNRFKVKLGAR-TPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGV 216
Query: 730 QYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPS 786
+ +E+PV N + + E++G+ + DE++ + A V +K
Sbjct: 217 ELVEQPVPRANFGALRRLTEQNGVAILADESLSSLS-----SAFELARDHAVDAFSLKLC 271
Query: 787 VIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELC 846
+GG N +A A+ G + +S +G +A + + L Y C EL
Sbjct: 272 NMGGIANTLKVAAVAEAAGISSYGGTMLDSTVGTAAALHVYATLP-SLPYGC-----ELI 325
Query: 847 PPVAQGLGTYQWLKEDVTTDPISI 870
P L + +T + I
Sbjct: 326 GP--------WVLGDRLTQQDLEI 341
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* Length = 368 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-36
Identities = 78/386 (20%), Positives = 138/386 (35%), Gaps = 62/386 (16%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IH 550
K+ +E ++ L AP +S+ ++ RE +L G G+GE +
Sbjct: 2 KLSGVELRRVQMPLVAPFRTSF----GTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYS 56
Query: 551 KENLLDAEEQLRFLLHFMTGAKISYFLPLLKG---SFSSWIWSTLGIPACEIFPSVRCGL 607
E AE LR Y +P L ++ + L + + L
Sbjct: 57 SEYNDGAEHVLR-----------HYLIPALLAAEDITAAKVTPLLA--KFKGHRMAKGAL 103
Query: 608 EMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLV 667
EMA+L+A H S + S+ + + ++ + +
Sbjct: 104 EMAVLDAELRAHERS----FAAE------LGSVRDSVPCGVSVGIMDTIPQLLDVVGGYL 153
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727
+EG+ IKLK+ +P D E ++ VR++ G + L+VDAN +T +A + L
Sbjct: 154 DEGYVRIKLKI----EPGWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLARL-DPF 208
Query: 728 DLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIV-AIVIK 784
L IE+P+ ++ + P+ LDE+I + G V + IK
Sbjct: 209 GLLLIEQPLEEEDVLGHAELARRIQTPICLDESIVSAR-----AAADAIKLGAVQIVNIK 263
Query: 785 PSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRE 844
P +GG+ A + HG E+GLG +A + +S
Sbjct: 264 PGRVGGYLEARRVHDVCAAHGIPVWCGGMIETGLGRAANVALASLPNF------------ 311
Query: 845 LCPPVAQGLGTYQWLKEDVTTDPISI 870
+ + T+P +
Sbjct: 312 ---TLPGDTSASDRFYKTDITEPFVL 334
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* Length = 367 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-36
Identities = 69/383 (18%), Positives = 136/383 (35%), Gaps = 52/383 (13%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
KI + + I P + E ++ ++ +DG VG E P + E
Sbjct: 2 KIVAIGAIPFSIPYTKPLRFAS----GEVHAAEHVLVRVHTDDGIVGVAEAPPRPFTYGE 57
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKG---SFSSWIWSTLGIPACEIFPSVRCGLEM 609
+ YF P L G + + + P+ + ++M
Sbjct: 58 TQTGIVAVIE-----------QYFAPALIGLTLTEREVAHTRMA--RTVGNPTAKAAIDM 104
Query: 610 AILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
A+ +A+ S + + + + +++ ++ + VA
Sbjct: 105 AMWDALGQSLRLS----VSEM------LGGYTDRMRVSHMLGFDDPVKMVAEAERIRETY 154
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
G K+KV RR D V++ +R++ G IEL VD NR W+ E+L + D DL
Sbjct: 155 GINTFKVKVGRR-PVQLDTAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDL 213
Query: 730 QYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSV 787
+ EE + + + +P DE++ P ++ + AI IK +
Sbjct: 214 LFAEELCPADDVLSRRRLVGQLDMPFIADESV----PTPADVTREVLGGSATAISIKTAR 269
Query: 788 IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCP 847
G + + A+ G V+ + +G + + F + E + + +
Sbjct: 270 TGFTG-STRVHHLAEGLGLDMVMGNQIDGQIGTACTVSFGTAFERTSRHAGE-------- 320
Query: 848 PVAQGLGTYQWLKEDVTTDPISI 870
L + + +D+ T P+ I
Sbjct: 321 -----LSNFLDMSDDLLTVPLQI 338
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} Length = 400 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 4e-36
Identities = 77/352 (21%), Positives = 128/352 (36%), Gaps = 41/352 (11%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IH 550
+I + I + P S + + R ++ + E GYGE AP E
Sbjct: 8 RIDGVSLYEIVIPMKIPFQISS----GTCYTRRSLVVEIR-EGDLFGYGESAPFEEPFYL 62
Query: 551 KENLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGL 607
E L + L+ ++ LP++ G S + RCG+
Sbjct: 63 GETLETTKVILK-----------NHLLPMILGKEPLSIEEFNHLIK-NGIRGNHFARCGV 110
Query: 608 EMAILNAIAVKHGSSFLNIL-----YPLTEIDEEISKRSTSIKICALIDSNKSPVEVASI 662
E A + IA K+ S ++ + + S I + +
Sbjct: 111 ENAYWDLIAKKNKISLKAMIEKKMKNLGVKQEYLASNNYIESGAALGIPEDGRIETLIHQ 170
Query: 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722
++EG+ IK+K+ P D E +QE R+ VG L DAN ++ + F
Sbjct: 171 VEESLQEGYRRIKIKI----KPGWDVEPLQETRRAVGDHFPLWTDANSSFELDQWETFKA 226
Query: 723 LIKDCDLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA 780
+ + E+P+ + D+ + E P+ LDE++ + + E A GI
Sbjct: 227 M-DAAKCLFHEQPLHYEALLDLKELGERIETPICLDESLISSR-----VAEFVAKLGISN 280
Query: 781 IV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLE 831
I IK +GG A I + A +G ESGLG I +S+
Sbjct: 281 IWNIKIQRVGGLLEAIKIYKIATDNGIKLWGGTMPESGLGARFLISLASFRG 332
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A Length = 382 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 4e-36
Identities = 62/350 (17%), Positives = 118/350 (33%), Gaps = 36/350 (10%)
Query: 489 SLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE 548
SL I +E + + P + + + ++ L DG G GE +
Sbjct: 2 SLHASAIESIETIIVDLPTIRPHKLAM----HTMQNQTLVLIRLRCADGIEGLGESTTIG 57
Query: 549 IHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRC 605
+ + + PLL G S+ L + +
Sbjct: 58 GLAYGNESPDSIKTNIDR--------FVAPLLIGQDASNINAAMLRLE-QSIRGNTFAKS 108
Query: 606 GLEMAILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIAT 664
G+E A+L+A + G + L + + ++ + + S + ++A
Sbjct: 109 GIESALLDAQGKRLGLP----VSEL------LGGRVRDALPVAWTLASGDTAKDIAEAQK 158
Query: 665 TLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLI 724
L KLK+ + +D + ++K +G +RVD N+ W AL ++
Sbjct: 159 MLDLRRHRIFKLKIGAG-EVDRDLAHVIAIKKALGDSASVRVDVNQAWDEAVALRACRIL 217
Query: 725 KDCDLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV 782
+ IE+P+ N +++ S P+ DE+I+ + A G ++
Sbjct: 218 GGNGIDLIEQPISRNNRAGMVRLNASSPAPIMADESIECVE-----DAFNLAREGAASVF 272
Query: 783 -IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLE 831
+K + GG A A+ G E G+G A L
Sbjct: 273 ALKIAKNGGPRATLRTAAIAEAAGIGLYGGTMLEGGIGTLASAHAFLTLN 322
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-35
Identities = 71/386 (18%), Positives = 133/386 (34%), Gaps = 62/386 (16%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IH 550
+I E + + L +S+ + R +L L+ +G G GE
Sbjct: 2 RIEAAELRILELPLKFRFETSF----GVQTKRTILLLRLF-GEGLEGLGEGVMERLPLYR 56
Query: 551 KENLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGL 607
+E + A L FLP + G + + L P + L
Sbjct: 57 EETVAGARYLLE-----------EVFLPRVLGRDLPNPEALREALA--PFRGNPMAKAVL 103
Query: 608 EMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLV 667
EMA + A G L+ + + ++++ + S + + +
Sbjct: 104 EMAFFDLWAKALGRP----LWQV------LGGVRQAVEVGVSLGIQPSVEDTLRVVERHL 153
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727
EEG+ IKLK+ P D EV++ VR+ L DAN ++ + L +
Sbjct: 154 EEGYRRIKLKI----KPGWDYEVLKAVREAFP-EATLTADANSAYSLANLAQLKRL-DEL 207
Query: 728 DLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIV-AIVIK 784
L YIE+P+ + D K E P+ LDE++ + K G +K
Sbjct: 208 RLDYIEQPLAYDDLLDHAKLQRELSTPICLDESLTGAE-----KARKAIELGAGRVFNVK 262
Query: 785 PSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRE 844
P+ +GG + + A+ G + E+G+G + + ++
Sbjct: 263 PARLGGHGESLRVHALAESAGIPLWMGGMLEAGVGRAHNLHLATLPGFTKP--------- 313
Query: 845 LCPPVAQGLGTYQWLKEDVTTDPISI 870
++ +ED+ + +
Sbjct: 314 -----GDVSSASRYWEEDIVEEALEA 334
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A Length = 385 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 5e-35
Identities = 78/384 (20%), Positives = 130/384 (33%), Gaps = 53/384 (13%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
KI M+ + + + R E +L L E G+ G+GE +P +
Sbjct: 9 KIIAMDLWHLALPVVSARDHGI---GRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFTGT 65
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEMA 610
+ L Y PL+ G I A + L+ A
Sbjct: 66 PEASYAALD-----------RYLRPLVIGRRVGDRVAIMDEAA-RAVAHCTEAKAALDSA 113
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
+L+ ++ L + K +I + I +N ++ L +
Sbjct: 114 LLDLAGRISNLP----VWAL------LGGKCRDTIPLSCSI-ANPDFDADIALMERLRAD 162
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
G IKLK R D D ++ + + +RVD N+ EA+ +
Sbjct: 163 GVGLIKLKTGFR-DHAFDIMRLELIARDFPE-FRVRVDYNQGLEIDEAVPRVLDVAQFQP 220
Query: 730 QYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPS 786
+IE+PV + E + + + +P+ DE++ + + + AH GI V IK
Sbjct: 221 DFIEQPVRAHHFELMARLRGLTDVPLLADESVYGPE-----DMVRAAHEGICDGVSIKIM 275
Query: 787 VIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELC 846
GG A +AR A HG MA FE+GL A + L
Sbjct: 276 KSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAA--TPEITL--------- 324
Query: 847 PPVAQGLGTYQWLKEDVTTDPISI 870
+ +L ED+ P +
Sbjct: 325 --GCEFYQASYFLNEDILETPFRV 346
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* Length = 327 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 3e-34
Identities = 54/220 (24%), Positives = 91/220 (41%), Gaps = 23/220 (10%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANR 710
P E A I + + + D ++ VR +G R +R+D N
Sbjct: 76 VPAVGPEEAARIVASSGCTTAKVKVAERGQ--SEANDVARVEAVRDALGPRGRVRIDVNG 133
Query: 711 NWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNML 770
W A+ L+ +L+Y+E+P +++ + +P+A DE+I + + DPL +
Sbjct: 134 AWDVDTAVRMIRLLDRFELEYVEQPCATVDELAEVRRRVSVPIAADESIRRAE-DPLRVR 192
Query: 771 EKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYL 830
+V+K +GG A R A+ G VVS+A E+ +GL+A + ++ L
Sbjct: 193 ---DAEAADVVVLKVQPLGGVRAA---LRLAEECGLPVVVSSAVETSVGLAAGVALAAAL 246
Query: 831 ELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISI 870
P A GL T + L DV DP+
Sbjct: 247 PEL--------------PYACGLATLRLLHADVCDDPLLP 272
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A Length = 368 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 4e-34
Identities = 75/335 (22%), Positives = 129/335 (38%), Gaps = 39/335 (11%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
I ++E ++L P S I+ ++ G +GYGE +P IH E
Sbjct: 2 IITQVELYKSPVKLKEPFKISL----GILTHANNVIVRIHTASGHIGYGECSPFMTIHGE 57
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAIL 612
++ A ++L + G + + ++ +A+
Sbjct: 58 SMDTAFIVGQYLAKGLIGTSCLDIVS---------NSLLMD-AIIYGNSCIKSAFNIALY 107
Query: 613 NAIAVKHGSSFLNILYPL--TEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEG 670
+ A G LY + D+ I T + S P ++A+ A + + G
Sbjct: 108 DLAAQHAGLP----LYAFLGGKKDKIIQ---TDYTV-----SIDEPHKMAADAVQIKKNG 155
Query: 671 FTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQ 730
F IK+KV D E I+ +R+ G I LR+DAN+ W+ + A+E L++ ++Q
Sbjct: 156 FEIIKVKVGG--SKELDVERIRMIREAAGDSITLRIDANQGWSVETAIETLTLLEPYNIQ 213
Query: 731 YIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIV-AIVIKPSV 787
+ EEPV + K + +P+ DE+ E+ + +K S
Sbjct: 214 HCEEPVSRNLYTALPKIRQACRIPIMADESCCNSF-----DAERLIQIQACDSFNLKLSK 268
Query: 788 IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
G NA I R A++ V ES LG +A
Sbjct: 269 SAGITNALNIIRLAEQAHMPVQVGGFLESRLGFTA 303
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} SCOP: c.1.11.2 d.54.1.1 PDB: 2chr_A Length = 370 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 1e-33
Identities = 70/387 (18%), Positives = 136/387 (35%), Gaps = 57/387 (14%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IH 550
KI +E + + P S + + I+ +Y +G VG GE +
Sbjct: 2 KIDAIEAVIVDVPTKRPIQMSI----TTVHQQSYVIVRVY-SEGLVGVGEGGSVGGPVWS 56
Query: 551 KENLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGL 607
E + + Y P L G + T+ A S + +
Sbjct: 57 AECAETIKIIVE-----------RYLAPHLLGTDAFNVSGALQTMA-RAVTGNASAKAAV 104
Query: 608 EMAILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTL 666
EMA+L+ A G S + L + ++I I + S + ++ S +
Sbjct: 105 EMALLDLKARALGVS----IAEL------LGGPLRSAIPIAWTLASGDTKRDLDSAVEMI 154
Query: 667 VEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD 726
K+K+ R P D ++ + +G + LRVD N+ W Q A + ++
Sbjct: 155 ERRRHNRFKVKLGFR-SPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEA 213
Query: 727 CDLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-I 783
++ IE+PV +N + + + + + + + DE++ ++ V + +
Sbjct: 214 LGVELIEQPVGRENTQALRRLSDNNRVAIMADESLSTLA-SAFDLARD----RSVDVFSL 268
Query: 784 KPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNR 843
K +GG IA A+ G + +S +G S + S +
Sbjct: 269 KLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTSVALQLYSTVPSL---------- 318
Query: 844 ELCPPVAQGLGTYQWLKEDVTTDPISI 870
P L L + ++ +P+ I
Sbjct: 319 ----PFGCELIGPFVLADTLSHEPLEI 341
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B Length = 378 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 1e-33
Identities = 65/334 (19%), Positives = 116/334 (34%), Gaps = 37/334 (11%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
+I R+ + L P S + L + ++G G+GE P +
Sbjct: 4 RITRLTVFHLDLPLAKPYWLSG--GRLKFDRLDSTYLRIDTDEGVTGWGEGCPWG---HS 58
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEMA 610
L A A I+ P L G S + + + V+ ++MA
Sbjct: 59 YLPAHGP-------GLRAGIATLAPHLLGLDPRSLDHVNRVMDL-QLPGHSYVKSPIDMA 110
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
+ + G L+ L + + +T + I + I S +P ++ + +
Sbjct: 111 CWDILGQVAGLP----LWQL------LGGEAATPVPINSSI-STGTPDQMLGLIAEAAAQ 159
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
G+ K+ DP +D I+ + + + D NR WT A+E ++ D
Sbjct: 160 GYRTHSAKIGGS-DPAQDIARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVRARD- 217
Query: 730 QYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPSVI 788
+IE+P Q + P+ LDE + +F G V IKP+ +
Sbjct: 218 -WIEQPCQTLDQCAHVARRVANPIMLDECLHEFS-----DHLAAWSRGACEGVKIKPNRV 271
Query: 789 GGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
GG A I + G + + L +A
Sbjct: 272 GGLTRARQIRDFGVSVGWQMHIEDVGGTALADTA 305
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} Length = 383 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 2e-33
Identities = 64/336 (19%), Positives = 131/336 (38%), Gaps = 36/336 (10%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
I ++E + + L P + + + ++S++LE+G +GYGE
Sbjct: 7 TIQKVESRILDVPLIRP----HGFATTTSTEQHILLVSVHLENGVIGYGEGVVPGGPWWG 62
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEMA 610
E + Y P+L G + S I + L + +++A
Sbjct: 63 GESVETMKALVDG--------YLAPVLIGRAVSELAGIMADLE-RVVARARYAKAAVDVA 113
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
+ +A A + L + + + + V VA I + E
Sbjct: 114 MHDAWARSLNVP----VRDL------LGGTVRDKVDVTWALGVLPLDVAVAEIEERIEEF 163
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
G + KLK+ DP +D + E+ ++VG R+ LR+D N W + AL + ++ + +
Sbjct: 164 GNRSFKLKMGAG-DPAEDTRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGV 222
Query: 730 QYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPS 786
+ E+P + E + + + + V DE++ + L +++ ++ +K +
Sbjct: 223 ELFEQPTPADDLETLREITRRTNVSVMADESVWTPA-EALAVVKA----QAADVIALKTT 277
Query: 787 VIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
GG + IA A+ G + + E +G +A
Sbjct: 278 KHGGLLESKKIAAIAEAGGLACHGATSLEGPIGTAA 313
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A Length = 375 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 2e-33
Identities = 77/389 (19%), Positives = 136/389 (34%), Gaps = 68/389 (17%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IH 550
KI E + R+ L +S+ + L + +G G E
Sbjct: 9 KIEAAEIVVARLPLKFRFETSF-----GVQTHKVVPLLILHGEGVQGVAEGTMEARPMYR 63
Query: 551 KENLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGL 607
+E + A + LR FLP + G +F++ + LG + R +
Sbjct: 64 EETIAGALDLLR-----------GTFLPAILGQTFANPEAVSDALG--SYRGNRMARAMV 110
Query: 608 EMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLV 667
EMA + A G L L + +++ + + V
Sbjct: 111 EMAAWDLWARTLGVP----LGTL------LGGHKEQVEVGVSLGIQADEQATVDLVRRHV 160
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727
E+G+ IKLK+ P D + ++ R+ I L VDAN +T +A L +
Sbjct: 161 EQGYRRIKLKI----KPGWDVQPVRATREAFPD-IRLTVDANSAYTLADAGRLRQL-DEY 214
Query: 728 DLQYIEEPVQNEEDIIKY---CEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-I 783
DL YIE+P+ +D++ + P+ LDE++ K G ++ +
Sbjct: 215 DLTYIEQPL-AWDDLVDHAELARRIRTPLCLDESVASAS-----DARKALALGAGGVINL 268
Query: 784 KPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNR 843
K + +GG + + AQ G ESG+G + I S+
Sbjct: 269 KVARVGGHAESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLST--------------- 313
Query: 844 ELCPPVAQG--LGTYQWLKEDVTTDPISI 870
L G ++ + D+ +P+
Sbjct: 314 -LSNFRLPGDTSSASRYWERDLIQEPLEA 341
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* Length = 379 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 2e-33
Identities = 79/386 (20%), Positives = 145/386 (37%), Gaps = 59/386 (15%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
KI ++ S+ +I L ++ RS + + L L++G GYG I +
Sbjct: 4 KIIDIKTSIIKIPLKRTFITAV----RSTNHIDSLAVELTLDNGVKGYGVAPATTAITGD 59
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEM 609
L + +R F P++ G S + + + +++
Sbjct: 60 TLQGMQYIIR-----------EIFAPVILGSDLSDYKQTLELAF-KKVMFNSAAKMAIDL 107
Query: 610 AILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
A + +A + S + L + ++ SI I S + E VE
Sbjct: 108 AYHDLLAKEQDIS----VAKL------LGAKANSIVTDVSI-SCGNVAETIQNIQNGVEA 156
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
FTAIK+K D +D ++++ + + I+ R DAN+ W + +F I L
Sbjct: 157 NFTAIKVKTGA--DFNRDIQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSL 214
Query: 730 --QYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIV-AIVIK 784
+ IE+PV + + + + + S +PV DE++ E+ I IK
Sbjct: 215 NVEIIEQPVKYYDIKAMAEITKFSNIPVVADESVFD-----AKDAERVIDEQACNMINIK 269
Query: 785 PSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRE 844
+ GG A I + A G +V ES G+ A F+ ++ + +
Sbjct: 270 LAKTGGILEAQKIKKLADSAGISCMVGCMMESPAGILATASFAL---AEDITVA-----D 321
Query: 845 LCPPVAQGLGTYQWLKEDVTTDPISI 870
L P W+ +D+ +D I+
Sbjct: 322 LDPL--------DWVAKDLYSDYITF 339
|
| >2pmq_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, isomerase, PSI-2; HET: MSE; 1.72A {Roseovarius SP} Length = 377 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 4e-33
Identities = 60/336 (17%), Positives = 117/336 (34%), Gaps = 41/336 (12%)
Query: 494 KICRMEYSLYRIQLC-APPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHK 551
KI ++ + + + P + + I+ + EDG++G+GE P+ +
Sbjct: 4 KIAEIQLFQHDLPVVNGPYRIAS----GDVWSLTTTIVKIIAEDGTIGWGETCPVGPTYA 59
Query: 552 ENLLDAEEQLRFLLHFMTGAKISYFLPLLKGS--FSSWIWSTLGIPACEIFPSVRCGLEM 609
E A + L G+ + + + + L++
Sbjct: 60 EAHAGGAL-----------AALEVLASGLAGAEALPLPLHTRMD-SLLCGHNYAKSALDI 107
Query: 610 AILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVE 668
A+ + + G ++ L + + S+ + P E A A
Sbjct: 108 AVHDLWGKRLGVP----VHEL------LGGALTDSVSSYYSL-GVMEPDEAARQALEKQR 156
Query: 669 EGFTAIKLKVARRADPIKDAEVIQEVRKKV-GHRIELRVDANRNWTYQEALEFGFLIKDC 727
EG++ +++K+ R D E I++V + V G I L D NR WT ++AL F D
Sbjct: 157 EGYSRLQVKLGAR-PIEIDIEAIRKVWEAVRGTGIALAADGNRGWTTRDALRFSRECPDI 215
Query: 728 DLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPS 786
+E+P + ED+ + +DE + A +V +K S
Sbjct: 216 PF-VMEQPCNSFEDLEAIRPLCHHALYMDEDGTSLN-----TVITAAATSLVDGFGMKVS 269
Query: 787 VIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
IGG ++ + A+ + +A
Sbjct: 270 RIGGLQHMRAFRDFCAARNLPHTCDDAWGGDIVSAA 305
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A Length = 386 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 7e-33
Identities = 60/337 (17%), Positives = 101/337 (29%), Gaps = 37/337 (10%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
KI R++ + + + R + I+S+ + G G+GE P
Sbjct: 4 KITRIDIHRTDLPVRGGV--YRLSGGREYHSYDATIVSIETDTGLTGWGESTPFGSTY-- 59
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG---SFSSWIWSTLGIPACEIFPSVRCGLEMA 610
+ A T A + P + G IW + + R L++A
Sbjct: 60 -IAAHAG-------GTRAALELLAPAILGMDPRQHDRIWDRMRD-TLKGHRDARAALDIA 110
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
+ A G L + + + + + + I +P + + +
Sbjct: 111 CWDIAAQAAGLP----LCDM------TGGRVAGPVPVISSI-GGDTPEAMRAKVARHRAQ 159
Query: 670 GFTAIKLKVARR---ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD 726
GF +K+ P DAE I DAN T + AL L+
Sbjct: 160 GFKGHSIKIGASEAEGGPALDAERITACLADRQPGEWYLADANNGLTVEHALRMLSLLPP 219
Query: 727 CDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKP 785
+E P + + LP+ LDE I L + V +K
Sbjct: 220 GLDIVLEAPCASWAETKSLRARCALPLLLDELIQTET-----DLIAAIRDDLCDGVGLKV 274
Query: 786 SVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
S GG A G + V S + +A
Sbjct: 275 SKQGGITPMLRQRAIAAAAGMVMSVQDTVGSQISFAA 311
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} Length = 389 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 7e-33
Identities = 74/337 (21%), Positives = 124/337 (36%), Gaps = 42/337 (12%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
I R+ I L P + ++ ++++ L DG++G+GE APL + E
Sbjct: 6 LIRRVSIEALDIPLHEPFGIAG----GAQERAANLLVTVELADGTLGFGEAAPLPAFNGE 61
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEM 609
+ + G +W + L + + RC +E
Sbjct: 62 TQDGSRAAAV------------SLREAVVGSDARAWRAVARALREASGGGAGAARCAIET 109
Query: 610 AILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
AIL+A+ + G L+ +T I I + SP A
Sbjct: 110 AILDALTKRAGMP----LWAFFGGSGT--ALTTDITI-----TTGSPERAEEAARRAAAM 158
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD--C 727
GF A+K+KV R D I+ + L +D N T EAL +
Sbjct: 159 GFRALKVKVGGR-LAASDPARIEAIHA-AAPGASLILDGNGGLTAGEALALVAHARRLGA 216
Query: 728 DLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKP 785
D+ +E+PV + + + + +G+ VA DE+ +D L + + A + IK
Sbjct: 217 DVALLEQPVPRDDWDGMKEVTRRAGVDVAADESA-ASAEDVLRVAAERAATV---VNIKL 272
Query: 786 SVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
GG A IA A+ G ++ ES L ++A
Sbjct: 273 MK-GGIAEALDIAAVARAAGLGLMIGGMVESVLAMTA 308
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} Length = 378 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 8e-33
Identities = 66/335 (19%), Positives = 111/335 (33%), Gaps = 39/335 (11%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
KI R+ + L P S + ++ L + G G+GE P +
Sbjct: 4 KITRITVYQVDLPLEHPYWLSG--GRLKFELLDATLVKLETDAGITGWGEGTPWGHTYVP 61
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEM 609
A I P + G + + I A + ++M
Sbjct: 62 AHGPGIR-----------AGIETMAPFVLGLDPRRLLDVERAMDI-ALPGHLYAKSPIDM 109
Query: 610 AILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVE 668
A + G + L + T I + + KS E ++ +
Sbjct: 110 ACWDIAGQAAGLP----IADL------MGGGSRTPRPIASSV-GAKSVEETRAVIDRYRQ 158
Query: 669 EGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD 728
G+ A +K+ D +D I++V + D NR WT Q+AL +D
Sbjct: 159 RGYVAHSVKIGG--DVERDIARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLH 216
Query: 729 LQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPSV 787
+ E+P + +DI PV++DE + Q + A G+ + IK +
Sbjct: 217 V-MFEQPGETLDDIAAIRPLHSAPVSVDECLVTLQ-----DAARVARDGLAEVFGIKLNR 270
Query: 788 IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
+GG A + A HG V A S L +
Sbjct: 271 VGGLTRAARMRDIALTHGIDMFVMATGGSVLADAE 305
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} Length = 397 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-32
Identities = 69/386 (17%), Positives = 131/386 (33%), Gaps = 46/386 (11%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL--EIHK 551
KI ++E + + +G +L L+ ++G VG +
Sbjct: 4 KITKVEVIPISTPMKRAQLMRG----ATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRG 59
Query: 552 ENLLDAEEQLRFLLHFMTGAKISYFLP-LLKG-SFSSW--IWSTLGIPACEIFPSVRCGL 607
E + +F P +L G + I + I + +
Sbjct: 60 ETQDSITSMIC-----------DFFAPKVLLGEDPTKIEKIVGRMDI-LTRDNNQAKATV 107
Query: 608 EMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLV 667
+ A+ + + + G +Y L K I + ++ P VA A ++
Sbjct: 108 DFALHDLVGKRFGVP----VYQLLG-----GKTIERIPLGLVL-GAGEPEAVAEEALAVL 157
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727
EGF +KLK D ++ EVR+ VG ++L +D N WTY +AL ++
Sbjct: 158 REGFHFVKLKAGG--PLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKY 215
Query: 728 DLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IK 784
+L IE+P+ + + + + + P+ DE+ + D L ++ K G + IK
Sbjct: 216 NLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELH-DLLAIINK----GAADGLMIK 270
Query: 785 PSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRE 844
GG A A+ + SGL S + + + +
Sbjct: 271 TQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAG-- 328
Query: 845 LCPPVAQGLGTYQWLKEDVTTDPISI 870
P + + D+ +
Sbjct: 329 --PLHIHDCLNSRDIDNDIALNVPRF 352
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* Length = 369 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-32
Identities = 72/382 (18%), Positives = 140/382 (36%), Gaps = 54/382 (14%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
KI + R+ L P SY S I+ + ++G +GYGE +
Sbjct: 2 KITAIHLYAIRLPLRNPFVISY----GSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGE 57
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEMA 610
++ P L G + + I + P+ + +++A
Sbjct: 58 SWES----------TFHTLKHTLTPALIGQNPMNIEKIHDMMD-NTIYGVPTAKAAIDIA 106
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
+ + K +Y L I + + ++ S P +A A +++++
Sbjct: 107 CFDIMGKKLNQP----VYQL------IGGRYHEEFPVTHVL-SIADPENMAEEAASMIQK 155
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNW-TYQEALEFGFLIKDCD 728
G+ + K+KV + +D + I+ VR++VG+ I +RVD N+ W L + +
Sbjct: 156 GYQSFKMKVGT--NVKEDVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLN 213
Query: 729 LQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKP 785
+ +IE+PV + + + ++ LP+ +DE + + + +++ V IK
Sbjct: 214 IDWIEQPVIADDIDAMAHIRSKTDLPLMIDEGLKSSR-EMRQIIKL----EAADKVNIKL 268
Query: 786 SVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSS------YLELQNAYLCK 839
GG A +A A+ G V + ES + SA + +EL
Sbjct: 269 MKCGGIYPAVKLAHQAEMAGIECQVGSMVESSVASSAGFHVAFSKKIITSVELTGPLKFT 328
Query: 840 -------VMNRELCPPVAQGLG 854
+ GLG
Sbjct: 329 KDIGNLHYDVPFIRLNEKPGLG 350
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} Length = 371 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 2e-32
Identities = 53/334 (15%), Positives = 102/334 (30%), Gaps = 36/334 (10%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
KI R++ + Y+ R + I+ + + G G+GE P +
Sbjct: 5 KIARIDVFQVDLPYSGGVY--YLSAGREYRSFDATIVRITTDTGIEGWGESTPFGSNY-- 60
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG---SFSSWIWSTLGIPACEIFPSVRCGLEMA 610
R A I+ P L G I + A + +++A
Sbjct: 61 ---IASHPR-----GVRAGIATMAPSLIGLDPRRVDRINDAMDD-ALLGHEDAKTAIDVA 111
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
+ G + L + + +T + + + I P ++ + +
Sbjct: 112 CWDIFGKSVGLP----VCEL------LGGRTNTRLPLISSI-YVGEPEDMRARVAKYRAK 160
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
G+ +K++ +P+ DA+ I VDAN + + AL L+
Sbjct: 161 GYKGQSVKISG--EPVTDAKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGLD 218
Query: 730 QYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPSVI 788
+E P + I ++ +P+ DE + K + +K S
Sbjct: 219 FALEAPCATWRECISLRRKTDIPIIYDELATNEM-----SIVKILADDAAEGIDLKISKA 273
Query: 789 GGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
GG G V S + +A
Sbjct: 274 GGLTRGRRQRDICLAAGYSVSVQETCGSDIAFAA 307
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} Length = 379 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 4e-32
Identities = 50/334 (14%), Positives = 106/334 (31%), Gaps = 37/334 (11%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
+I R+ LY+ L S + ++ + + G G GE P +
Sbjct: 4 RITRIR--LYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGEN--Y 59
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG---SFSSWIWSTLGIPACEIFPSVRCGLEMA 610
++ E + P L G + + + + + + A
Sbjct: 60 MIAHSEGVDAFAR--------LAAPQLLGQDPRQVARMERLMDH-LVQGHGYAKAPFDAA 110
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
+ + G ++ L + K + + +S E +
Sbjct: 111 FWDILGQATGQP----VWML------LGGKLCDGAPMYRVA-PQRSEAETRAELARHRAA 159
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
G+ ++KV D D + I+ + + DAN+ W A+ +D D
Sbjct: 160 GYRQFQIKVGA--DWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDY 217
Query: 730 QYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPSVI 788
+E+P ++ E+ + + P+ LDE + M ++ I +K S +
Sbjct: 218 -ILEQPCRSYEECQQVRRVADQPMKLDECVTGLH-----MAQRIVADRGAEICCLKISNL 271
Query: 789 GGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
GG A + + V ++ + +A
Sbjct: 272 GGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAA 305
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} Length = 377 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 4e-32
Identities = 61/336 (18%), Positives = 120/336 (35%), Gaps = 39/336 (11%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
+ R+ L + + S + +L + DG VG+GE AP E+
Sbjct: 7 VVERIRIFLVESPIKMARLQGVGNVKGSV---KRVLLEVTSADGIVGWGEAAPWEVFTGT 63
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG---SFSSWIWSTLGIPACEIFPSVRCGLEMA 610
A A Y PL+ G + + + + +EMA
Sbjct: 64 PEAAF-----------SALDIYLRPLILGAPIKRVRELMARMDK-MLVGHGEAKAAVEMA 111
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
+L+ + G S + L + + I + I ++ +V
Sbjct: 112 LLDILGKATGLS----VADL------LGGRVRDRIPLSFSI-ADPDFDADLERMRAMVPA 160
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
G T K+K + ++ +++ +R + G RI+LR+D N+ T A++ +
Sbjct: 161 GHTVFKMKTGVK-PHAEELRILETMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRP 219
Query: 730 QYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPS 786
+IE+PV ++ + + + P+ DE+ D + ++ + + +K
Sbjct: 220 TFIEQPVPRRHLDAMAGFAAALDTPILADESCFDAV-DLMEVVRR----QAADAISVKIM 274
Query: 787 VIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
GG A + A G +E G+ L+A
Sbjct: 275 KCGGLMKAQSLMAIADTAGLPGYGGTLWEGGIALAA 310
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A Length = 345 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 6e-32
Identities = 71/336 (21%), Positives = 126/336 (37%), Gaps = 43/336 (12%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
+I ++ SL R + P + + + LE G GYGE +P ++ E
Sbjct: 3 RIVNVKLSLKRYEYEKPFHITG----SVSSESRNVEVEIVLESGVKGYGEASPSFRVNGE 58
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSWIWSTLGIPACEIFPSVRCGLEMAI 611
+ ++ G ++ FPS++ ++ A
Sbjct: 59 RVEALLAIEN------------AVREMITGIDVRNYARIFEITDRLFGFPSLKAAVQFAT 106
Query: 612 LNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGF 671
L+A++ + G+ + L + + T + + A + EEGF
Sbjct: 107 LDALSQELGTQ----VCYLLGGKRD--EIETDKTV-----GIDTVENRVKEAKKIFEEGF 155
Query: 672 TAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD--CDL 729
IK+KV + +D E ++E+ K V + VDAN +T +EA+EF + D+
Sbjct: 156 RVIKIKVGE--NLKEDIEAVEEIAK-VTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDI 212
Query: 730 QYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPS 786
E+PV ++ E + S PVA DE+ + + V V IK
Sbjct: 213 AVYEQPVRREDIEGLKFVRFHSPFPVAADESART-----KFDVMRLVKEEAVDYVNIKLM 267
Query: 787 VIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
G +A I A+ G ++ ES LG++
Sbjct: 268 K-SGISDALAIVEIAESSGLKLMIGCMGESSLGINQ 302
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} Length = 391 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 2e-31
Identities = 53/337 (15%), Positives = 116/337 (34%), Gaps = 42/337 (12%)
Query: 494 KICRMEYSLYRIQL-CAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHK 551
KI + + + + P T + + + + ++ + + G G+GE P+ +
Sbjct: 24 KIAEIHVYAHDLPVKDGPYTIAS----STVWSLQTTLVKIVADSGLAGWGETCPVGPTYA 79
Query: 552 ENLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLE 608
+ A ++ P L G + + + + ++
Sbjct: 80 PSHALGAR-----------AALAEMAPGLIGANPLQPLVLRRRMD-GLLCGHNYAKAAID 127
Query: 609 MAILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLV 667
+A + + +G + L + + + P E+A IA V
Sbjct: 128 IAAYDLMGKHYGVR----VADL------LGGVAAERVPSYYAT-GIGQPDEIARIAAEKV 176
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKV-GHRIELRVDANRNWTYQEALEFGFLIKD 726
EGF +++K+ R D E +++V +++ G L VD NR+ ++AL +
Sbjct: 177 AEGFPRLQIKIGGR-PVEIDIETVRKVWERIRGTGTRLAVDGNRSLPSRDALRLSRECPE 235
Query: 727 CDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKP 785
+E+P E+I + LDE+ + + + A G+ +K
Sbjct: 236 IPF-VLEQPCNTLEEIAAIRGRVQHGIYLDESGEDLS-----TVIRAAGQGLCDGFGMKL 289
Query: 786 SVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
+ IGG + + A+ + +A
Sbjct: 290 TRIGGLQQMAAFRDICEARALPHSCDDAWGGDIIAAA 326
|
| >1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 Length = 324 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 3e-31
Identities = 67/350 (19%), Positives = 122/350 (34%), Gaps = 48/350 (13%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
+ ++ L P + SR ++ L E+G G GE P + E+
Sbjct: 3 HMRTVKVFEEAWPLHTPFVIAR----GSRSEARVVVVELE-EEGIKGTGECTPYPRYGES 57
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILN 613
Q+ S L KG + L A R L+ A+ +
Sbjct: 58 DASVMAQIM-----------SVVPQLEKGLTREELQKILPAGA------ARNALDCALWD 100
Query: 614 AIAVKHGSSFLNIL-YPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFT 672
A + S +++ L E T+ + +P ++A+ A+TL + G
Sbjct: 101 LAARRQQQSLADLIGITLPETVI------TAQTV-----VIGTPDQMANSASTLWQAGAK 149
Query: 673 AIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732
+K+K+ D +E + +R V L VDAN +W + L+ D + +
Sbjct: 150 LLKVKL----DNHLISERMVAIRTAVPD-ATLIVDANESWRAEGLAARCQLLADLGVAML 204
Query: 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFE 792
E+P+ ++D LP+ DE+ + L L+ + IK GG
Sbjct: 205 EQPLPAQDDAALENFIHPLPICADESC--HTRSNLKALKGRYE----MVNIKLDKTGGLT 258
Query: 793 NAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSS---YLELQNAYLCK 839
A +A A+ G ++ + +SA + + +L
Sbjct: 259 EALALATEARAQGFSLMLGCMLCTSRAISAALPLVPQVSFADLDGPTWLA 308
|
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} Length = 365 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-30
Identities = 70/384 (18%), Positives = 125/384 (32%), Gaps = 58/384 (15%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
I + + L P + ++ ++ + L DG++G GE AP + E
Sbjct: 6 TIQAISAEAINLPLTEPFAIAS----GAQAVAANVLVKVQLADGTLGLGEAAPFPAVSGE 61
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIF--PSVRCGLEMA 610
+ L G+ + + RCGLEMA
Sbjct: 62 TQTGTSAAIE------------RLQSHLLGADVRGWRKLAAMLDHAEHEAAAARCGLEMA 109
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEG 670
+L+A+ + L+ + T + I + V A+ A ++ G
Sbjct: 110 MLDALTRHYHMP----LHVF--FGGVSKQLETDMTI-----TAGDEVHAAASAKAILARG 158
Query: 671 FTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIK--DCD 728
+IK+K A D D ++ + + L VD N + + AL F K
Sbjct: 159 IKSIKVKTAGV-DVAYDLARLRAIHQAAP-TAPLIVDGNCGYDVERALAFCAACKAESIP 216
Query: 729 LQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIV-AIVIKP 785
+ E+P+ ++ + + +SG VA DE+ + D + + A G I IK
Sbjct: 217 MVLFEQPLPREDWAGMAQVTAQSGFAVAADESA-RSAHD----VLRIAREGTASVINIKL 271
Query: 786 SVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSS------YLELQNAYLCK 839
G + AQ G ++ ES L +S ++ +++L
Sbjct: 272 MK-AGVAEGLKMIAIAQAAGLGLMIGGMVESILAMSFSANLAAGNGGFDFIDLDTPLFIA 330
Query: 840 ---------VMNRELCPPVAQGLG 854
L G G
Sbjct: 331 EHPFIGGFAQTGGTLQLADVAGHG 354
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} Length = 393 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 8e-29
Identities = 75/345 (21%), Positives = 121/345 (35%), Gaps = 51/345 (14%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
I + + I L P + ++ ++++ L DG+ GYGE AP + E
Sbjct: 28 TIRALTVAPLDIPLHEPFGIAS----GAQEVARNLLVAVELTDGTRGYGEAAPFPAFNGE 83
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEM 609
A + L++G W I L + S RC +E
Sbjct: 84 TQDMAHAAIL------------AARSLVEGADVREWRRIALALP-ALPGMTGSARCAIET 130
Query: 610 AILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
AIL+A+ + L+ T + I + S A A +V
Sbjct: 131 AILDALTRRARLP----LWAFFGGAAT--SLETDVTI-----TTGSVTAAARAAQAIVAR 179
Query: 670 GFTAIKLKV-------ARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722
G T IK+K+ D I +R V L +D N +T +AL
Sbjct: 180 GVTTIKIKIGAGDPDATTIRTMEHDLARIVAIRD-VAPTARLILDGNCGYTAPDALRLLD 238
Query: 723 LIKDCDLQ--YIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGI 778
++ + E+PV +EE + + +PVA DE++ D + A
Sbjct: 239 MLGVHGIVPALFEQPVAKDDEEGLRRLTATRRVPVAADESV-ASATD----AARLARNAA 293
Query: 779 V-AIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
V + IK G E A IA A+ G ++ ES L ++
Sbjct: 294 VDVLNIKLMKCGIVE-ALDIAAIARTAGLHLMIGGMVESLLAMTV 337
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} Length = 384 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-27
Identities = 62/343 (18%), Positives = 120/343 (34%), Gaps = 52/343 (15%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
KI + + L P SY ++ + +DG+VG GE + +
Sbjct: 5 KISNVRVRPLVLPLKQPYHWSYGIRESFAVN----LIEIEADDGTVGIGE-CTVAPDQT- 58
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG---SFSSWIWSTL--------GIPACEIFPS 602
T A + L G + + + + G
Sbjct: 59 --------------GTAAILYRLAKHLVGHSPHDVAPLIARIFHQEYLGHGANIMRAANQ 104
Query: 603 VRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASI 662
+ G++MA+ + G ++ L ++ + ++ E+A
Sbjct: 105 IFSGIDMAMWDLQGKLAGLP----VHQLLG-----GAHRKAVGYFYFL-QGETAEELARD 154
Query: 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722
A +G LKV R D E+ VR ++G LR+DAN W+ +A+
Sbjct: 155 AAVGHAQGERVFYLKVGR--GEKLDLEITAAVRGEIG-DARLRLDANEGWSVHDAINMCR 211
Query: 723 LIKDCDLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA 780
++ D+++IE+P + + E+ G+P+ D+ D + +
Sbjct: 212 KLEKYDIEFIEQPTVSWSIPAMAHVREKVGIPIVADQAAFTLY-DVYEICRQ----RAAD 266
Query: 781 IV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
++ I P IGG + A A+ G + ++F +G+ A
Sbjct: 267 MICIGPREIGGIQPMMKAAAVAEAAGLKICIHSSFTTGITTCA 309
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} Length = 392 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-26
Identities = 68/342 (19%), Positives = 122/342 (35%), Gaps = 47/342 (13%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAP------L 547
R+ ++R + P +S+ + R ++ + DG+VG+GEV
Sbjct: 11 TPARVRAHVFRYPVSTPVKTSFGTMHD----RPAVLVEVEDSDGAVGWGEVWCNFPACGA 66
Query: 548 EIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGL 607
E + E L LL A + L+ + + G P GL
Sbjct: 67 EHRARLV---ETVLAPLLTARAFADPAQAFAHLEARTA-VLAIQTGEPG--PLAQAIAGL 120
Query: 608 EMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLV 667
++A+ + A + G L+ + I + A S +P +
Sbjct: 121 DIALCDLAARRAGQP----LWAW------LGGSGDRIGVYA---SGINPENPEDVVARKA 167
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727
EG+ A KLKV D +D VR+ +G L DAN+ W A + +
Sbjct: 168 AEGYRAFKLKVGF--DDARDVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPA 225
Query: 728 DLQYIEEPV---QNEEDIIKYCEESGLPVALDE---TIDKFQKDPLNMLEKYAHPGIVAI 781
L ++EEP+ + + + + + +P+A E + F+ L + +
Sbjct: 226 QLDWLEEPLRADRPAAEWAELAQAAPMPLAGGENIAGVAAFET----ALAA----RSLRV 277
Query: 782 V-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
+ + GGF +AR G + +G+GL A
Sbjct: 278 MQPDLAKWGGFSGCLPVARAVVAAG-LRYCPHYLGAGIGLQA 318
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A Length = 398 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-25
Identities = 66/391 (16%), Positives = 136/391 (34%), Gaps = 68/391 (17%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
KI ++ + + L P TSS+ ++ + + G G+GE
Sbjct: 25 KITDVDVWVVNLPLVNPFTSSFETKTGETRT----VVRVRTDSGVEGWGETMWGA----- 75
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG---SFSSWIWSTL---GIPACEIFPSVRCGL 607
A + P L G + + +
Sbjct: 76 --------------PVAAIVRRMAPDLIGTSPFALEAFHRKQHMVPFFYGYLGYAAIAAV 121
Query: 608 EMAILNAIAVKHGSSFLNILYPLTEI------DEEISKRSTSIKICALIDSNKSPVEVAS 661
++A +A+ K +T++ DE + P +A
Sbjct: 122 DVACWDAMG-KA----TGQ--SVTDLLGGAVRDEVPITALITRADAPGATPADLPKAMAE 174
Query: 662 IATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
A +VEE GF A+KLK D D +++ VR+ + + LRVD N W+ +++
Sbjct: 175 HAVRVVEEGGFDAVKLKGTT--DCAGDVAILRAVREALPG-VNLRVDPNAAWSVPDSVRA 231
Query: 721 GFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA 780
G +++ DL+Y+E+P E + + + +P+ + + +F+ D + V
Sbjct: 232 GIALEELDLEYLEDPCVGIEGMAQVKAKVRIPLCTNMCVVRFE-DFAPAMRL----NAVD 286
Query: 781 IV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCK 839
++ GG +A + G + + E G+ +A++ S
Sbjct: 287 VIHGDVYKWGGIAATKALAAHCETFGLGMNLHSGGELGIATAAHLAVVSST--------- 337
Query: 840 VMNRELCPPVAQGLGTYQWLKEDVTTDPISI 870
P +++ + + +L D +P+ +
Sbjct: 338 -------PVLSRAIDSMYYLHADDIIEPLHL 361
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* Length = 338 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 3e-25
Identities = 73/373 (19%), Positives = 138/373 (36%), Gaps = 55/373 (14%)
Query: 497 RMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLD 556
+M + Y ++L T + SR + + +G GYGE + E +
Sbjct: 2 KMTFFPYELKLRHVFTVAT----YSRTTTPDVQVEIE-YEGVTGYGEASMPPYLGETVES 56
Query: 557 AEEQLRFLLHFMTGAKISYFLPLLKGSFS-SWIWSTLGIPACEIFPSVRCGLEMAILNAI 615
L+ L F I S + + + +++A+ + +
Sbjct: 57 VMNFLK-----------KVNLEQFSDPFQLEDILSYVD-SLSPKDTAAKAAVDIALHDLV 104
Query: 616 AVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIK 675
G+ Y + +++E + T+ I +P V + F +K
Sbjct: 105 GKLLGAP----WYKIWGLNKEKTPS-TTFTI-----GIDTPDVVRAKTK-ECAGLFNILK 153
Query: 676 LKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQE-ALEFGFLIKDCDLQYIEE 734
+K+ R D E+I+ +R + + VDAN+ W ++ AL+ +K+ + IE+
Sbjct: 154 VKLGRDN----DKEMIETIRSVT--DLPIAVDANQGWKDRQYALDMIHWLKEKGIVMIEQ 207
Query: 735 PV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFE 792
P+ + +DI ++S LPV DE++ + D + L+ I IK G
Sbjct: 208 PMPKEQLDDIAWVTQQSPLPVFADESL-QRLGD-VAALKGAFT----GINIKLMKCTGMR 261
Query: 793 NAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSS---YLELQNAYLCK--------VM 841
A + A G +V E+ +SA FS + +L L V+
Sbjct: 262 EAWKMVTLAHALGMRVMVGCMTETSCAISAASQFSPAVDFADLDGNLLISNDRFKGVEVV 321
Query: 842 NRELCPPVAQGLG 854
N ++ G+G
Sbjct: 322 NGKITLNDLPGIG 334
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A Length = 359 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 4e-24
Identities = 55/352 (15%), Positives = 111/352 (31%), Gaps = 53/352 (15%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEV-APLEIHKE 552
I + + L P ++ + ++ L G VG+ + A + +
Sbjct: 5 LITGLRTRAVNVPLAYPVHTAVGTVGTAPLV----LIDLATSAGVVGHSYLFAYTPVALK 60
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKGS-------FSSWIWSTLGIPACEIFPSVRC 605
+L + + ++ + +
Sbjct: 61 SLKQLLDDMA---------------AMIVNEPLAPVSLEAMLAKRFCLAGYTGLIRMAAA 105
Query: 606 GLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATT 665
G++MA +A+ H + L L + + ++ S A T
Sbjct: 106 GIDMAAWDALGKVHETP----LVKL------LGANARPVQAYDSH-SLDGVKLATERAVT 154
Query: 666 LVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIK 725
E GF A+K ++ +D V++ +R+ VG + VD N++ A++ ++
Sbjct: 155 AAELGFRAVKTRIGYP-ALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQ 213
Query: 726 DCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQKDPLNMLEKYAHPGIVA 780
+ +IEEP + E + + +PV + E ++ K L G
Sbjct: 214 QEGVTWIEEPTLQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFK----ALSI----GACR 265
Query: 781 IV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLE 831
+ IGG + AQ+ G E L A + +LE
Sbjct: 266 LAMPDAMKIGGVTGWIRASALAQQFGIPMSSHLFQEISAHLLAATPTAHWLE 317
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A Length = 441 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-22
Identities = 58/320 (18%), Positives = 108/320 (33%), Gaps = 47/320 (14%)
Query: 529 ILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQL--------RFLLHFMTGAKISYFLPLL 580
I+ + ++G G GE H E + A +L + + + + +
Sbjct: 55 IVEVVTDEGITGLGETYGDLAHLEQVRAAAARLPGLDVYALHRIYRRVADVVGANIVTDM 114
Query: 581 KGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHG---SSFL------------N 625
G S + V E+A L+ G + L
Sbjct: 115 HGLTGSSSRV-------KTVDRVFAAFEVACLDIQGKAAGRPVADLLGGKVRDAVPYSAY 167
Query: 626 ILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI 685
+ Y + R + VA + E GF +IKLK P
Sbjct: 168 LFYKWAGHPGKPEDRF--------GPALDPDGIVAQARLLIGEYGFRSIKLKGGVF-PPE 218
Query: 686 KDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKY 745
++AE IQ +R + LR+D N WT + ++ G + L+Y+E+P + + +
Sbjct: 219 QEAEAIQALRDAFPG-LPLRLDPNAAWTVETSIRVGRALDG-VLEYLEDPTPGIDGMARV 276
Query: 746 CEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRH 804
E +P+A + + + +E+ + ++ I GG + IA
Sbjct: 277 AAEVPMPLATNMCVVTPE-HLPAAVER----RPIGVLLIDHHYWGGLVRSAHIATLCATF 331
Query: 805 GKMAVVSAAFESGLGLSAYI 824
G + + G+ L+A
Sbjct: 332 GIELSMHSNSHLGISLAAMT 351
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* Length = 391 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 3e-22
Identities = 60/343 (17%), Positives = 127/343 (37%), Gaps = 52/343 (15%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
KI +E I F + I+ ++ ++G G GE++
Sbjct: 2 KITDLELHAVGIPRHTG------------FVNKHVIVKIHTDEGLTGIGEMSDFSHLPLY 49
Query: 554 LLDAEEQLRFLLHFMTG---AKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMA 610
+D + + LL + G + L +F ++ +R G++ A
Sbjct: 50 SVDLHDLKQGLLSILLGQNPFDLMKINKELTDNFPETMYYYEK------GSFIRNGIDNA 103
Query: 611 ILNAIAVKHGSSFLNILYPLTE-----IDEEISKRSTSIKICALIDSNKSPVEVASIATT 665
+ + A K+ L+I +++ + E+I ++ +
Sbjct: 104 LHDLCA-KY----LDI--SVSDFLGGRVKEKIKVCYP----IFRHRFSEEVESNLDVVRQ 152
Query: 666 LVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELR-VDANRNWTYQEALEFGFLI 724
+E+GF +L V + + D E + V+++ G R+ ++ D + +++A +
Sbjct: 153 KLEQGFDVFRLYVGK--NLDADEEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRL 210
Query: 725 KDCDL--QYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA 780
DL + IE P + + + + ++ + E + F+ M++K +
Sbjct: 211 TKYDLGLEMIESPAPRNDFDGLYQLRLKT--DYPISEHVWSFK-QQQEMIKK----DAID 263
Query: 781 IV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
I I P IGG +A A A+ K V+ E +G +A
Sbjct: 264 IFNISPVFIGGLTSAKKAAYAAEVASKDVVLGTTQELSVGTAA 306
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* Length = 383 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 5e-22
Identities = 55/326 (16%), Positives = 100/326 (30%), Gaps = 52/326 (15%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEV-APLEIHKE 552
I + + P +++ + ++ + + G G+ + A + +
Sbjct: 28 AITGVTARAVITPMKRPLRNAFGVIDSGPLV----LIDVTTDQGVTGHSYLFAYTRLALK 83
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKGS-------FSSWIWSTLGIPACEIFPSVRC 605
L+ E + L G + + +
Sbjct: 84 PLVHLVEDIG---------------RELAGKALVPVDLMKAMDAKFRLLGWQGLVGMAVS 128
Query: 606 GLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATT 665
GL+MA +A+ G + L + + I + + ++ T
Sbjct: 129 GLDMAFWDALGQLAGKP----VVEL------LGGSARPIPAYDSYGVLDARDDERTLRTA 178
Query: 666 LVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIK 725
E GF AIK K D D +I+ +R +G I L +D N++ EA +
Sbjct: 179 CDEHGFRAIKSKGGH-GDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLA 237
Query: 726 DCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQKDPLNMLEKYAHPGIVA 780
D DL +IEEPV N E S +P+ E F + + G
Sbjct: 238 DYDLTWIEEPVPQENLSGHAAVRERSEIPIQAGENWWFPRGFAE----AIAA----GASD 289
Query: 781 IV-IKPSVIGGFENAGLIARWAQRHG 805
+ +GG +A A
Sbjct: 290 FIMPDLMKVGGITGWLNVAGQADAAS 315
|
| >3no1_A Isomerase, mandelate racemase/muconate lactonizing enzyme; enolase,metal-binding,PSI-II, NYSGXRC, structural genomics; 2.16A {Marine actinobacterium} PDB: 3msy_A Length = 398 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 7e-22
Identities = 31/166 (18%), Positives = 57/166 (34%), Gaps = 16/166 (9%)
Query: 647 CALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRV 706
+ +A E G +K KV +DA I R+ G + +
Sbjct: 158 AIGGYYGEPLGSIADEMHNYQELGLAGVKFKVGGL-SAAEDAARITAAREAAGDDFIICI 216
Query: 707 DANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKY---CEESGLPVALDE---TID 760
DAN+ + A++ I D ++++ EEPV+ D + +PV + +
Sbjct: 217 DANQGYKPAVAVDLSRRIADLNIRWFEEPVEWHNDKRSMRDVRYQGSVPVCAGQTEFSAS 276
Query: 761 KFQKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHG 805
+ ++E A + + S GG A A +
Sbjct: 277 GCRD----LMETGA----IDVCNFDSSWSGGPTAWLRTAAIATSYD 314
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* Length = 445 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 4e-21
Identities = 54/319 (16%), Positives = 115/319 (36%), Gaps = 45/319 (14%)
Query: 529 ILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQL--------RFLLHFMTGAKISYFLPLL 580
++ L + G G GE +H E L A + + ++ A L
Sbjct: 60 VIQLDTDAGLTGLGETYADTVHLERLQAAAHAIVGRSVFSTNVIRALISDA-------LG 112
Query: 581 KGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTE-----IDE 635
I + + V E+A L+ + P+++ + +
Sbjct: 113 GDRTGDGSGLAGMITSASVVDRVFSPFEVACLDVQG-QV----TGR--PVSDLLGGAVRD 165
Query: 636 EI--------SKRSTSIKICALIDSNKSPVEVASIATTLVEE-GFTAIKLKVARRADPIK 686
+ + + P + + A +++E GF+AIKLK P +
Sbjct: 166 AVPFSAYLFYKWAAHPGAEPDGWGAALDPDGIVAQARRMIDEYGFSAIKLKGGVF-APEE 224
Query: 687 DAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYC 746
+ ++ +R LR+D N WT Q +++ ++ L+Y+E+P + + +
Sbjct: 225 EMAAVEALRAAFP-DHPLRLDPNAAWTPQTSVKVAAGLEGV-LEYLEDPTPGLDGMAEVA 282
Query: 747 EESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHG 805
++ +P+A + + F + K + V +V GG + + L+A G
Sbjct: 283 AQAPMPLATNMCVVAFD-QLPAAVAKNS----VQVVLSDHHYWGGLQRSRLLAGICDTFG 337
Query: 806 KMAVVSAAFESGLGLSAYI 824
+ + G+ L+A +
Sbjct: 338 LGLSMHSNSHLGISLAAMV 356
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} Length = 401 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 4e-21
Identities = 42/196 (21%), Positives = 72/196 (36%), Gaps = 22/196 (11%)
Query: 639 KRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVAR--RADPIKDAEVIQEVRK 696
S + A + +P E A +GF A+K R DA+ I R+
Sbjct: 129 SASHGKRPYASLLFGDTPQETLERARAARRDGFAAVKFGWGPIGRGTVAADADQIMAARE 188
Query: 697 KVGHRIELRVDANRNWTY--QEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCE----ESG 750
+G +L VD + + + A + + ++EEP + + +
Sbjct: 189 GLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGVLWLEEPFD-AGALAAHAALAGRGAR 247
Query: 751 LPVALDE---TIDKFQKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHGK 806
+ +A E Q ++++ G + + I IGG A +A AQ G
Sbjct: 248 VRIAGGEAAHNFHMAQ----HLMDY----GRIGFIQIDCGRIGGLGPAKRVADAAQARG- 298
Query: 807 MAVVSAAFESGLGLSA 822
+ V+ F S L LSA
Sbjct: 299 ITYVNHTFTSHLALSA 314
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A Length = 382 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 7e-21
Identities = 31/179 (17%), Positives = 69/179 (38%), Gaps = 17/179 (9%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANR 710
DS + S +++GF IK+K+ +D I ++ G I + +DAN+
Sbjct: 135 DSPQWISRSVSNVEAQLKKGFEQIKVKIGGT-SFKEDVRHINALQHTAGSSITMILDANQ 193
Query: 711 NWTYQEALEFGFLIKD-CDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQK 764
++ A ++ + ++ ++EEP+ +D +PVA E ++
Sbjct: 194 SYDAAAAFKWERYFSEWTNIGWLEEPLPFDQPQDYAMLRSRLSVPVAGGENMKGPAQYV- 252
Query: 765 DPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
+L + + I+ + G + + A+ G + + A++ L
Sbjct: 253 ---PLLSQ----RCLDIIQPDVMHVNGIDEFRDCLQLARYFG-VRASAHAYDGSLSRLY 303
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} Length = 389 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 9e-21
Identities = 57/346 (16%), Positives = 116/346 (33%), Gaps = 58/346 (16%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
+ + ++ S + + L L E G VG G + L +
Sbjct: 4 SLSHFRITRFQFARDRVIGDSQVRADD----VNVAALELVSESGEVGLGFIQTLFNPLPD 59
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKGS---------FSSWIWSTLGIPACEIFPSVR 604
+ E P LKG+ +
Sbjct: 60 QQEIESVFE-----------HEVWPSLKGNRAIALVHRVNRPRGGNQRAYSLPFH----- 103
Query: 605 CGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKI-CALIDSNKSPVEVASIA 663
+++A+ + A + G L+ L + R +K + +D + S+
Sbjct: 104 EAVQVALWDLAAKEAGLP----LHVL------LGSRRNRVKAYASGLDFHLDDDAFVSLF 153
Query: 664 TTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFL 723
+ G++A K+KV R D +D ++ ++ V ++ +D N WT +EAL
Sbjct: 154 SHAASIGYSAFKIKVGHR-DFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVA 212
Query: 724 IKD--CDLQYIEEPVQNEEDIIKYCE----ESGLPVALDETIDKFQKDPLNMLEKYAHPG 777
I++ DL ++E+P+ D + + E +D +LE +A
Sbjct: 213 IREAGHDLLWVEDPIL-RHDHDGLRTLRHAVTWTQINSGEYLDLQ--GKRLLLEAHA--- 266
Query: 778 IVAIVIKPSVIGGFENAGLIARWAQRHG-KMAVVSAAFESGLGLSA 822
A ++ G + I A G +++ + E+G+ ++
Sbjct: 267 --ADILNVH--GQVTDVMRIGWLAAELGIPISIGNTFLEAGVHMAV 308
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} Length = 390 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 1e-20
Identities = 61/331 (18%), Positives = 105/331 (31%), Gaps = 57/331 (17%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAP-LEIHKE 552
++ ++L P T+ ++ + E+G G + P + +
Sbjct: 29 TFRKLTARPVLLKLQRPVTARIATIPDWPLI----LIDIETEEGVPGRAYLEPYVPKAMK 84
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKGS-------FSSWIWSTLGIPACEIFPSVRC 605
L+ A + +L G + S + +
Sbjct: 85 YLVPALHDMS---------------DMLAGQPLAPAEIYDKTRKSLHFVGYAGLSMIAAS 129
Query: 606 GLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA-----LIDSNKSPVEVA 660
G++MA+ +A+A L L + S+K L + E
Sbjct: 130 GVDMAVWDALARAANMP----LCTL------LGGTPGSVKAYNSNGLWLKSPAEVAAEAV 179
Query: 661 SIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
+ GF +KL++ R DP D E + V VG L VD N+ EA+
Sbjct: 180 ELKAEGQGTGFKGLKLRMGR-DDPAVDIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHR 238
Query: 721 GFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQKDPLNMLEKYAH 775
I D L++IEEPV N + + + P+ + E + + L+
Sbjct: 239 TRQIDDLGLEWIEEPVVYDNFDGYAQLRHDLKTPLMIGENFYGPREMHQ----ALQA--- 291
Query: 776 PGIVAIV-IKPSVIGGFENAGLIARWAQRHG 805
G +V IGG A A G
Sbjct: 292 -GACDLVMPDFMRIGGVSGWMRAAGVAGAWG 321
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* Length = 392 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 4e-20
Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 11/162 (6%)
Query: 650 IDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDAN 709
K + ++ G+ +K+K+ A +D I+ V +++G +L VDAN
Sbjct: 160 YYPGKGLSMLRGEMRGYLDRGYNVVKMKIGG-APIEEDRMRIEAVLEEIGKDAQLAVDAN 218
Query: 710 RNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQK 764
+ + + + +++D L + EE + E P+A E + +
Sbjct: 219 GRFNLETGIAYAKMLRDYPLFWYEEVGDPLDYALQAALAEFYPGPMATGENLFSHQDAR- 277
Query: 765 DPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHG 805
N+L + ++ G + HG
Sbjct: 278 ---NLLRYGGMRPDRDWLQFDCALSYGLCEYQRTLEVLKTHG 316
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A Length = 413 | Back alignment and structure |
|---|
Score = 91.7 bits (227), Expect = 1e-19
Identities = 47/331 (14%), Positives = 105/331 (31%), Gaps = 45/331 (13%)
Query: 526 EGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SF 584
E + L LEDG V +G+ A ++ FL P L G
Sbjct: 51 ESISVLLVLEDGQVAHGDCAAVQY----SGAGGRDPLFLAKDFIPVIEKEIAPKLIGREI 106
Query: 585 SSW--IWSTLGIPACE---IFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISK 639
+++ + + ++R G+ AIL+A+A + ++ E +
Sbjct: 107 TNFKPMAEEFDKMTVNGNRLHTAIRYGITQAILDAVAKTRKVTMAEVIR--DEYNPGAEI 164
Query: 640 RSTSIKICALIDSNKSPVEVASI--ATTLVEEGFTAIKLKVARRADPIKDA-----EVIQ 692
+ + D V+ I A L ++ K+ + + + + + I
Sbjct: 165 NAVPV-FAQSGDDRYDNVDKMIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLRDRII 223
Query: 693 EVRKKVGHRIELRVD------ANRNWTYQEALEFGFLIKDCDLQY---IEEPV--QNEED 741
++R + + +D A + + ++ + + + IE P+ ++ +
Sbjct: 224 KLRVREDYAPIFHIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPFHLRIEGPMDVEDRQK 283
Query: 742 IIK---------YCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFE 792
++ + DE + + D + A + IK +GG
Sbjct: 284 QMEAMRDLRAELDGRGVDAELVADEWCNTVE-DVKFFTDNKA---GHMVQIKTPDLGGVN 339
Query: 793 NAGLIARWAQRHGKMAVVS-AAFESGLGLSA 822
N + + +G A E+
Sbjct: 340 NIADAIMYCKANGMGAYCGGTCNETNRSAEV 370
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} Length = 445 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 2e-19
Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 12/173 (6%)
Query: 655 SPVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWT 713
P V A +++E GF AIKLK P + I+ + K + LR+D N WT
Sbjct: 191 DPEGVVKQAKKIIDEYGFKAIKLKGGVF-PPADEVAAIKALHKAFPG-VPLRLDPNAAWT 248
Query: 714 YQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETI-DKFQKDPLNMLEK 772
+ + ++ ++Y+E+P E + +E+ +P+A + + L
Sbjct: 249 VETSKWVAKELEG-IVEYLEDPAGEIEGMAAVAKEASMPLATNMAVVAFDH------LPP 301
Query: 773 YAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYI 824
V ++ GG + +A G + + G+ L+A
Sbjct: 302 SILQDAVQVILSDHHFWGGLRKSQTLASICATWGLRLSMHSNSHLGISLAAMT 354
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A Length = 371 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 4e-19
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 17/166 (10%)
Query: 647 CALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRV 706
ID ++ + A + GF AIK+KV R D +D + + +R+ +G L V
Sbjct: 138 AGGIDLELPVADLKTQADRFLAGGFRAIKMKVGR-PDLKEDVDRVSALREHLGDSFPLMV 196
Query: 707 DANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDK 761
DAN WT A+ + DL +IEEP + + ESG +A E T+
Sbjct: 197 DANMKWTVDGAIRAARALAPFDLHWIEEPTIPDDLVGNARIVRESGHTIAGGENLHTLYD 256
Query: 762 FQKDPLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHG 805
F + G + + +P V IGG+ +A A+ +
Sbjct: 257 FHN----AVRA----GSLTL-PEPDVSNIGGYTTFRKVAALAEANN 293
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* Length = 389 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 7e-19
Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 21/192 (10%)
Query: 640 RSTSIKI-CALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV 698
+ ++ + I + +P + A VE+GFTA KLKV R P KDA ++ +R++V
Sbjct: 135 HTRGVRAYASSIYWDLTPDQAADELAGWVEQGFTAAKLKVGR--APRKDAANLRAMRQRV 192
Query: 699 GHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEES-GLPVAL 755
G +E+ VDAN++ +AL ++ + + EEP+ + E + + +A
Sbjct: 193 GADVEILVDANQSLGRHDALAMLRILDEAGCYWFEEPLSIDDIEGHRILRAQGTPVRIAT 252
Query: 756 DE---TIDKFQKDPLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHGKMAVV 810
E T + F + + + + ++ GG A I+ A +A
Sbjct: 253 GENLYTRNAFN----DYIRN----DAIDV-LQADASRAGGITEALAISASAASAH-LAWN 302
Query: 811 SAAFESGLGLSA 822
F + ++A
Sbjct: 303 PHTFNDIITVAA 314
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} Length = 428 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 9e-19
Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWT 713
+ +A A + G+ A+KL++ D E ++ VRK +G +++ DAN +T
Sbjct: 184 QPKESLAEEAQEYIARGYKALKLRIGD--AARVDIERVRHVRKVLGDEVDILTDANTAYT 241
Query: 714 YQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGL-PVALDE---TIDKFQKDPL 767
+A ++ + ++EEP + + + + L P+A E T +F
Sbjct: 242 MADARRVLPVLAEIQAGWLEEPFACNDFASYREVAKITPLVPIAAGENHYTRFEFG---- 297
Query: 768 NMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
ML+ G V + S GG IA A + + + + + +GL +A
Sbjct: 298 QMLDA----GAVQVWQPDLSKCGGITEGIRIAAMASAYR-IPINAHSSATGLNHAA 348
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A Length = 450 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 1e-18
Identities = 59/365 (16%), Positives = 109/365 (29%), Gaps = 54/365 (14%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
KI +M + + + + F R +L L E G+ G GE+ E
Sbjct: 6 KITKMN--VVPVAGEDGFLLNLSGGHEPWFIRC--VLVLEDESGNRGVGEIPSSEGILNG 61
Query: 554 LLDAEEQLRFLLHFMTG---AKISYFLPLLKGSFSSWIWSTLGIPACE--IFPSVRCGLE 608
L + G ++ L +G + G + + V +E
Sbjct: 62 LEKCRSLV-------EGARVNEVKQVLSRARGLLAQGGPEERGRQTFDLRVAVHVITAIE 114
Query: 609 MAILNAIAVKH----------------------GSSFLNILYPLTEIDEEISKRSTSIKI 646
A+ + + G FL T++
Sbjct: 115 SALFDLFG-QALGMPVADLLGQYGRQRDEVEALGYLFLLGDPDKTDLPYPRVADPVDAWD 173
Query: 647 CALIDSNKSPVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELR 705
+P VA++A + GF KLK ++A+ I+ + + L
Sbjct: 174 EVRYREAMTPEAVANLARAAYDRYGFKDFKLKGGVL-RGEEEADCIRALHEAFPE-ARLA 231
Query: 706 VDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNE------EDIIKYCEESGLPVALDETI 759
+D N W EA+ IK L Y E+P E E + ++ + +GLP A +
Sbjct: 232 LDPNGAWKLDEAVRVLEPIKH-LLSYAEDPCGQEGGFSGRETMAEFKKRTGLPTATNMIA 290
Query: 760 DKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLG 819
++ ++ V I + + A + G + +
Sbjct: 291 TDYK-QLQYAVQL----NSVDIPLADCHFWTMQGAVAVGELCNEWGMTWGSHSNNHFDIS 345
Query: 820 LSAYI 824
L+
Sbjct: 346 LAMMT 350
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* Length = 398 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 1e-18
Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 17/163 (10%)
Query: 650 IDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDAN 709
+ +V E G IKLKV + + +D + VR+ +G L VDAN
Sbjct: 170 GFLHTPLDQVLKNVVISRENGIGGIKLKVGQ-PNCAEDIRRLTAVREALGDEFPLMVDAN 228
Query: 710 RNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQK 764
+ W + A+ G ++ +L +IEEP+ + E + P+A E + + ++
Sbjct: 229 QQWDRETAIRMGRKMEQFNLIWIEEPLDAYDIEGHAQLAAALDTPIATGEMLTSFREHEQ 288
Query: 765 DPLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHG 805
++ ++P +GG I A +HG
Sbjct: 289 ----LILG----NASDF-VQPDAPRVGGISPFLKIMDLAAKHG 322
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* Length = 393 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 2e-18
Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 17/163 (10%)
Query: 650 IDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDAN 709
+ ++ A+ +E G IKLKV + D D + VRK +G + L VDAN
Sbjct: 157 GFLHTPIDQLMVNASASIERGIGGIKLKVGQ-PDGALDIARVTAVRKHLGDAVPLMVDAN 215
Query: 710 RNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQK 764
+ W A + + +L +IEEP+ + E + P+A E + +
Sbjct: 216 QQWDRPTAQRMCRIFEPFNLVWIEEPLDAYDHEGHAALALQFDTPIATGEMLTSAAEHGD 275
Query: 765 DPLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHG 805
++ + P +GG IA A+ G
Sbjct: 276 ----LIRH----RAADY-LMPDAPRVGGITPFLKIASLAEHAG 309
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} Length = 372 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 2e-18
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 647 CALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRV 706
+ ++ + G +K+KV R +P KD E ++ R+ +G +EL V
Sbjct: 136 GSGGFTSYPLRRLQEQLGGWAAAGIPRVKMKVGR--EPEKDPERVRAAREAIGESVELMV 193
Query: 707 DANRNWTYQEALEFGF-LIKDCDLQYIEEPVQNEEDI-----IKYCEESGLPVALDE 757
DAN +T ++AL + ++ + Y+EEPV ED ++ G+ +A E
Sbjct: 194 DANGAYTRKQALYWAGAFAREAGISYLEEPVS-SEDREGLRLLRDRGPGGVAIAAGE 249
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A Length = 388 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 3e-18
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 19/185 (10%)
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWT 713
++ +A + GF A K D A I +R+ +G + ++ D + N T
Sbjct: 163 RTLKARGELAKYWQDRGFNAFKFATPVADD--GPAAEIANLRQVLGPQAKIAADMHWNQT 220
Query: 714 YQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQKDPLN 768
+ ALE ++ D + E PV + + K + + +P+A+ E T +
Sbjct: 221 PERALELIAEMQPFDPWFAEAPVWTEDIAGLEKVSKNTDVPIAVGEEWRTHWDMR----A 276
Query: 769 MLEKYAHPGIVAIVIKPSV-IGGFENAGLIARWAQRHGKMAVVS-AAFESGLGLSAYIIF 826
+E+ +AI ++P + G N I A HG + V+ A +G+ L+A +
Sbjct: 277 RIER----CRIAI-VQPEMGHKGITNFIRIGALAAEHG-IDVIPHATVGAGIFLAASLQA 330
Query: 827 SSYLE 831
SS L
Sbjct: 331 SSTLS 335
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} Length = 372 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 3e-18
Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 15/156 (9%)
Query: 656 PVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQ 715
+A A + E+GFT +K+KV DP D + VR++V + + +D N W
Sbjct: 153 EDLLAGSARAVEEDGFTRLKIKVGH-DDPNIDIARLTAVRERVDSAVRIAIDGNGKWDLP 211
Query: 716 EALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQKDPLNML 770
F KD D+ + EEP+ + + + +P+AL E T+D F+ +
Sbjct: 212 TCQRFCAAAKDLDIYWFEEPLWYDDVTSHARLARNTSIPIALGEQLYTVDAFRS----FI 267
Query: 771 EKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHG 805
+ A VA V + +GG +A A H
Sbjct: 268 DAGA----VAYVQPDVTRLGGITEYIQVADLALAHR 299
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} Length = 374 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 1e-17
Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 19/178 (10%)
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVARRADPIK-DAEVIQEVRKKVGHRIELRVDANRNW 712
P + +I L ++GF++IK D D +++ VR+ G +E+++D W
Sbjct: 145 DKPEDNVAIVQGLKDQGFSSIKFGGGVMGDDPDTDYAIVKAVREAAGPEMEVQIDLASKW 204
Query: 713 -TYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQKDP 766
T + +++ +L +IEEPV + K + +A E T +FQ+
Sbjct: 205 HTCGHSAMMAKRLEEFNLNWIEEPVLADSLISYEKLSRQVSQKIAGGESLTTRYEFQE-- 262
Query: 767 LNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
+ K I ++P + GG I AQ +G ++ F +G+ L A
Sbjct: 263 --FITK----SNADI-VQPDITRCGGITEMKKIYDIAQMNG-TQLIPHGFSTGILLHA 312
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} Length = 391 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 2e-17
Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 17/162 (10%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANR 710
D K + + + IK+ + +++VR+ VG + L +D
Sbjct: 145 DLKKDTNDYLRQIEKFYGKKYGGIKIYPML-DSLSISIQFVEKVREIVGDELPLMLDLAV 203
Query: 711 NWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQKD 765
+ F + + +IEEPV N + + + V E + F+
Sbjct: 204 PEDLDQTKSFLKEVSSFNPYWIEEPVDGENISLLTEIKNTFNMKVVTGEKQSGLVHFR-- 261
Query: 766 PLNMLEKYAHPGIVAIVIKP--SVIGGFENAGLIARWAQRHG 805
++ + I P S +GG + I+ A +G
Sbjct: 262 --ELISR----NAADI-FNPDISGMGGLIDIIEISNEASNNG 296
|
| >2ppg_A Putative isomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.49A {Sinorhizobium meliloti} Length = 399 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 2e-17
Identities = 32/175 (18%), Positives = 72/175 (41%), Gaps = 19/175 (10%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714
+ + A +A +GF++ K D A+ ++ +R+++G + + D + T
Sbjct: 167 TRAKRAELAAAWQAKGFSSFKFASPVADD--GVAKEMEILRERLGPAVRIACDMHWAHTA 224
Query: 715 QEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQKDPLNM 769
EA+ ++ L + E PV+ + + + + +A+ E T+
Sbjct: 225 SEAVALIKAMEPHGLWFAEAPVRTEDIDGLARVAASVSTAIAVGEEWRTVHDMVP----R 280
Query: 770 LEKYAHPGIVAIVIKPSVI-GGFENAGLIARWAQRHGKMAVVS-AAFESGLGLSA 822
+ + +AI ++P + G I +A H + V+ A +G+ L+A
Sbjct: 281 VAR----RALAI-VQPEMGHKGITQFMRIGAYAHVHH-IKVIPHATIGAGIFLAA 329
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* Length = 392 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 2e-17
Identities = 29/188 (15%), Positives = 64/188 (34%), Gaps = 26/188 (13%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI-------KDAEVIQEVRKKVGHRIE 703
D + + A +G K+KV R + +D +++ + + G +
Sbjct: 144 DERAAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGK 203
Query: 704 LRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEE--------SGLPVAL 755
+ +DAN + E + D +L ++EE ED Y + + +A
Sbjct: 204 IMIDANNAYNLNLTKEVLAALSDVNLYWLEEAFH--EDEALYEDLKEWLGQRGQNVLIAD 261
Query: 756 DETIDKFQKDPLNMLEKYAHPGIVAIVIKPSV-IGGFENAGLIARWAQRHGKMAVVSAAF 814
E + + + V + ++ + GF + + HG + +
Sbjct: 262 GEGL--ASPHLIEWATRGR----VDV-LQYDIIWPGFTHWMELGEKLDAHG-LRSAPHCY 313
Query: 815 ESGLGLSA 822
+ G+ A
Sbjct: 314 GNAYGIYA 321
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 Length = 382 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 3e-17
Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 14/160 (8%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVAR-----RADPIKDAEVIQEVRKKVGHRIELRVDAN 709
+P + A TLV+ G+ IKL D D + VR+ VG I L +DA
Sbjct: 149 TPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDAF 208
Query: 710 RNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPL 767
++ +AL G ++ +IEEP+ + + +PV E+
Sbjct: 209 HWYSRTDALALGRGLEKLGFDWIEEPMDEQSLSSYKWLSDNLDIPVVGPESAAGKHWHRA 268
Query: 768 NMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHG 805
++ G I ++ V +GG A A+ G
Sbjct: 269 EWIKA----GACDI-LRTGVNDVGGITPALKTMHLAEAFG 303
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* Length = 393 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 7e-17
Identities = 35/184 (19%), Positives = 70/184 (38%), Gaps = 23/184 (12%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVAR-----RADPIKDAEVIQEVRKKVGHRIELR 705
+ V +A + E A+K++ D D + VR+ +G +
Sbjct: 136 AARSVDEVVREVARRVEAEQPAAVKIRWDGDRTRCDVDIPGDIAKARAVRELLGPDAVIG 195
Query: 706 VDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TID 760
DAN ++ A+ G ++D + EEPVQ + + + + + V+ E T+
Sbjct: 196 FDANNGYSVGGAIRVGRALEDLGYSWFEEPVQHYHVGAMGEVAQRLDITVSAGEQTYTLQ 255
Query: 761 KFQKDPLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHGKMAVVSAAFESGL 818
+ +++ +++P + +GG A A HG + V + G+
Sbjct: 256 ALK----DLILSGVR------MVQPDIVKMGGITGMMQCAALAHAHG-VEFVPHQTQPGV 304
Query: 819 GLSA 822
G A
Sbjct: 305 GHFA 308
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 3nxl_A Length = 470 | Back alignment and structure |
|---|
Score = 82.3 bits (203), Expect = 2e-16
Identities = 50/371 (13%), Positives = 103/371 (27%), Gaps = 55/371 (14%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
++ M+ + ++ L G G GEV E ++
Sbjct: 9 RVTEMQVIPVAGRDSMLLNLCGAHAPFFTRN----LVILKDNAGRTGVGEVPGGEGIRQA 64
Query: 554 LLDAEEQL--------RFLLHFM------TGAKISYFLPLLKGSFSSWIWSTLGIPACEI 599
L + +L + G S S
Sbjct: 65 LERVIPLVVGQSIGRTNGVLSSIRRALAGGGNAAHQATVHQVTSASEAAVLRQPHEINLR 124
Query: 600 FPSVRCGLEMAILNAIAVKH---------------------GSSFLNILYPLTEIDEEIS 638
+V +E A+L+ + + F T++
Sbjct: 125 MDNVITAVEAALLDLLG-QFLEVPVAELLGAGQQRDSAPMLAYLFYVGDRRKTDLPYLEG 183
Query: 639 KRSTSIKICALIDSNKSPVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKK 697
+ ++ +P +A +A E GF KLK ++ E I K
Sbjct: 184 ANGADDWLRLRHEAAMTPAAIARLAEAATERYGFADFKLKGGVM-PGAEEMEAI-AAIKA 241
Query: 698 VGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNE------EDIIKYCEESGL 751
+ +D N W+ EA+ + Y E+P E E + ++ +G+
Sbjct: 242 RFPHARVTLDPNGAWSLNEAIALCKGQGH-LVAYAEDPCGPEAGYSGREVMAEFKRATGI 300
Query: 752 PVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVS 811
P A + ++ + ++ +A V I + + + +A+ G
Sbjct: 301 PTATNMIATDWR-QMGHAVQLHA----VDIPLADPHFWTMQGSVRVAQLCDEWGLTWGSH 355
Query: 812 AAFESGLGLSA 822
+ + L+
Sbjct: 356 SNNHFDVSLAM 366
|
| >4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A Length = 464 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 5e-16
Identities = 56/330 (16%), Positives = 109/330 (33%), Gaps = 51/330 (15%)
Query: 529 ILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWI 588
I+ L G+ G GEV E ++ L DA+ + G + + ++ ++
Sbjct: 58 IVILKDNSGNTGVGEVPGGEKIRQTLEDAKPLVI-------GKTLGEYKNVMNTVRQTFN 110
Query: 589 WSTLGIPACEIFP-----SVRCGLEMAILNAIAVKH---------------------GSS 622
G + F V +E A+L+ + + G
Sbjct: 111 DHDAGGRGLQTFDLRTTIHVVTAIEAAMLDLLG-QFLGVTVASLLGDGQQRDAVEMLGYL 169
Query: 623 FLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEE-GFTAIKLKVARR 681
F T + + + + +P V +A E+ GF KLK
Sbjct: 170 FFIGDRKKTTLAYQNQENDPCDWYRVRHEEAMTPESVVRLAEAAYEKYGFNDFKLKGGVL 229
Query: 682 ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEED 741
D ++AE + + K+ + +D N W+ EA++ G +K L Y E+P E
Sbjct: 230 -DGFEEAEAVTALAKRFPD-ARITLDPNGAWSLDEAVKIGKQLKG-VLAYAEDPCG-AEQ 285
Query: 742 IIKYCEE-------SGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENA 794
E +GLP A + ++ + + + V I + + +
Sbjct: 286 GYSGREIMAEFRRATGLPTATNMIATDWR-QMGHTISLQS----VDIPLADPHFWTMQGS 340
Query: 795 GLIARWAQRHGKMAVVSAAFESGLGLSAYI 824
+A+ G + + L+ +
Sbjct: 341 IRVAQMCHEWGLTWGSHSNNHFDISLAMFT 370
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A Length = 388 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 8e-16
Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 23/182 (12%)
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVA------RRADPIKDAEVIQEVRKKVGHRIELRVD 707
E + +GFTA K++ R P + E+I +R+++G ++L +D
Sbjct: 146 TPRDEAERLKRLRDTQGFTAFKVRAGAEVGRNRDEWPGRTEEIIPTMRRELGDDVDLLID 205
Query: 708 ANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKF 762
AN +T A+E G +++D + EEP + + + V E + +
Sbjct: 206 ANSCYTPDRAIEVGHMLQDHGFCHFEEPCPYWELAQTKQVTDALDIDVTGGEQDCDLPTW 265
Query: 763 QKDPLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHGKMAVVSAAFESGLGL 820
Q M++ V I ++P + +GG + A+ G + V L
Sbjct: 266 Q----RMIDM----RAVDI-VQPDILYLGGICRTLRVVEMARAAG-LPVTPHCANWSLVT 315
Query: 821 SA 822
Sbjct: 316 LF 317
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* Length = 455 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 1e-15
Identities = 30/172 (17%), Positives = 63/172 (36%), Gaps = 14/172 (8%)
Query: 659 VASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEAL 718
+ A + GF KLK + K+ + + E++K + +D N W+ EA+
Sbjct: 190 IELAAASKDRYGFKDFKLKGGVF-EGSKEIDTVIELKKHFPD-ARITLDPNGCWSLDEAI 247
Query: 719 EFGFLIKDCDLQYIEEPVQNE------EDIIKYCEESGLPVALDETIDKFQKDPLNMLEK 772
+ + D L Y E+P E E + ++ +G+P A + ++ + + +
Sbjct: 248 QLCKGLNDV-LTYAEDPCIGENGYSGREIMAEFRRRTGIPTATNMIATNWR-EMCHAIML 305
Query: 773 YAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYI 824
V I + A +A+ G + + L+ +
Sbjct: 306 ----QSVDIPLADPHFWTLTGASRVAQLCNEWGLTWGCHSNNHFDISLAMFS 353
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A Length = 433 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-15
Identities = 38/168 (22%), Positives = 60/168 (35%), Gaps = 25/168 (14%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVA-----------RRADPIKDAEVIQEVRKKVGHRIE 703
S A A V G+TA+K A D E +++R VG + +
Sbjct: 146 SADMAAESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAVGDKAD 205
Query: 704 LRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---T 758
L + +T A+ G I+ + EEPV N + + +PVA E T
Sbjct: 206 LLFGTHGQFTTAGAIRLGQAIEPYSPLWYEEPVPPDNVGAMAQVARAVRIPVATGERLTT 265
Query: 759 IDKFQKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHG 805
+F +L + G AI+ GG +A A+ +
Sbjct: 266 KAEFA----PVLRE----GAAAILQPALGRAGGIWEMKKVAAMAEVYN 305
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A Length = 412 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 2e-15
Identities = 23/164 (14%), Positives = 62/164 (37%), Gaps = 21/164 (12%)
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVAR-----RADPIKDAEVIQEVRKKVGHRIELRVDA 708
S + A ++ G+ A K + ++ + ++ VR+ +G+ +L ++
Sbjct: 178 GSIEAMQKEAEEAMKGGYKAFKSRFGYGPKDGMPGMRENLKRVEAVREVIGYDNDLMLEC 237
Query: 709 NRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQ 763
W A + + +++EEPV + + + +P++ E ++
Sbjct: 238 YMGWNLDYAKRMLPKLAPYEPRWLEEPVIADDVAGYAELNAMNIVPISGGEHEFSVIGCA 297
Query: 764 KDPLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHG 805
+ ++ + V++ ++ +GG A I A+
Sbjct: 298 E----LINR----KAVSV-LQYDTNRVGGITAAQKINAIAEAAQ 332
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* Length = 413 | Back alignment and structure |
|---|
Score = 78.2 bits (192), Expect = 3e-15
Identities = 58/332 (17%), Positives = 112/332 (33%), Gaps = 47/332 (14%)
Query: 526 EGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SF 584
E + L LE+G+V G+ A + + FL + PLL+G
Sbjct: 51 ECVSVQLILENGAVAVGDCAAV----QYSGAGGRDPLFLAEHFIPFLNDHIKPLLEGRDV 106
Query: 585 SSW-----IWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISK 639
++ + L I + +VR GL A+L+A A+ G ++ E
Sbjct: 107 DAFLPNARFFDKLRIDGNLLHTAVRYGLSQALLDATALASGRLKTEVV--CDEWQLPCVP 164
Query: 640 RSTSIKICALIDSNKSPVEVASI--ATTLVEEGFTAIKLKVARRADPIKD-----AEVIQ 692
+ + D V+ + L ++ K+ + + +++ ++ I
Sbjct: 165 EAIPL-FGQSGDDRYIAVDKMILKGVDVLPHALINNVEEKLGFKGEKLREYVRWLSDRIL 223
Query: 693 EVRKKVGHRIELRVDANR------NWTYQEALEFGFLIKDCDLQY---IEEPV--QNEED 741
+R + L +D + E+ ++ IE PV N+ D
Sbjct: 224 SLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPD 283
Query: 742 IIKYCEE---------SGLPVALDETIDKFQKDPLNMLE-KYAHPGIVAIVIKPSVIGGF 791
I+ SG+ + DE + +Q D ++ + H + IK +GG
Sbjct: 284 QIRMLTAITKELTRLGSGVKIVADEWCNTYQ-DIVDFTDAGSCH----MVQIKTPDLGGI 338
Query: 792 ENAGLIARWAQRHGKMAVVSAA-FESGLGLSA 822
N + +HG A E+ +
Sbjct: 339 HNIVDAVLYCNKHGMEAYQGGTCNETEISART 370
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A Length = 405 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-15
Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 22/181 (12%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPI-------KDAEVIQEVRKKVGHRIELRVD 707
P +V + L GF KL I + E+R G+ +E +D
Sbjct: 125 RPADVIAGMKALQAGGFDHFKLNGCEEMGIIDTSRAVDAAVARVAEIRSAFGNTVEFGLD 184
Query: 708 ANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKF 762
+ + A ++ +IEEPV E + + LP+A E + F
Sbjct: 185 FHGRVSAPMAKVLIKELEPYRPLFIEEPVLAEQAETYARLAAHTHLPIAAGERMFSRFDF 244
Query: 763 QKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLS 821
+ +LE G V+I+ S GG IA A+ + +A+ + L+
Sbjct: 245 K----RVLEA----GGVSILQPDLSHAGGITECVKIAAMAEAYD-VALAPHCPLGPIALA 295
Query: 822 A 822
A
Sbjct: 296 A 296
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} Length = 394 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-14
Identities = 32/182 (17%), Positives = 71/182 (39%), Gaps = 20/182 (10%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVAR--RADPIKDAEVIQEVRKKVGHRIELRVDA 708
++ + E G A+K+ + + + ++E+R+ +G +++ VD
Sbjct: 148 TLSEIVEAYKPLIAKAKERGAKAVKVCIIPNDKVSDKEIVAYLRELREVIGWDMDMMVDC 207
Query: 709 NRNWT-YQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKF 762
WT +Q+A ++D DL +IE +Q + K + E T +
Sbjct: 208 LYRWTDWQKARWTFRQLEDIDLYFIEACLQHDDLIGHQKLAAAINTRLCGAEMSTTRFEA 267
Query: 763 QKDPLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHGKMAVVSAAFESGLGL 820
Q+ LEK +++ ++ GG I + H ++ +++G+
Sbjct: 268 QE----WLEK----TGISV-VQSDYNRCGGVTELLRIMDICEHHN-AQLMPHNWKTGITA 317
Query: 821 SA 822
+A
Sbjct: 318 AA 319
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} Length = 412 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-14
Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 25/168 (14%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPI-----------KDAEVIQEVRKKVGHRIE 703
P A A V+ GFTA+K A + + VR+ VG + +
Sbjct: 144 DPDLAAECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRCELFCRRVREAVGSKAD 203
Query: 704 LRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---T 758
L + A+ ++ D + EEPV EE I + + + +P+A E T
Sbjct: 204 LLFGTHGQMVPSSAIRLAKRLEKYDPLWFEEPVPPGQEEAIAQVAKHTSIPIATGERLTT 263
Query: 759 IDKFQKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHG 805
+F +L+ G +I+ + + +GG A IA A+ H
Sbjct: 264 KYEFH----KLLQA----GGASILQLNVARVGGLLEAKKIATLAEVHY 303
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} Length = 410 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 2e-14
Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 14/143 (9%)
Query: 631 TEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI----- 685
T + S S + D + +A +LV EG+ A+K+ I
Sbjct: 132 TSLGGRRSIGSAELSTGPYDDQVAFMRDAGVLAESLVAEGYAAMKIWPFDDFASITPHHI 191
Query: 686 ------KDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--- 736
E +++R VG RIE+ + + W A + D + ++E+P+
Sbjct: 192 SLTDLKDGLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALADYGVLWVEDPIAKM 251
Query: 737 QNEEDIIKYCEESGLPVALDETI 759
N + ++ P+ E +
Sbjct: 252 DNIPAVADLRRQTRAPICGGENL 274
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} Length = 404 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 4e-14
Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 25/168 (14%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPI-----------KDAEVIQEVRKKVGHRIE 703
A A V++GFTA+K A + +++R VG + +
Sbjct: 151 DADMAAEAAAKAVDQGFTAVKFDPAGAYTIYDGHQPSLEDLERSEAFCKQIRAAVGTKAD 210
Query: 704 LRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNEEDIIKYCEESGLPVALDE---T 758
L + +T A ++ D + EEP+ + ED+ + + +PVA E T
Sbjct: 211 LLFGTHGQFTVSGAKRLARRLEAYDPLWFEEPIPPEKPEDMAEVARYTSIPVATGERLCT 270
Query: 759 IDKFQKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHG 805
+F +LE G +I+ + +GG A IA A+ H
Sbjct: 271 KYEFS----RVLET----GAASILQMNLGRVGGLLEAKKIAAMAECHS 310
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} Length = 407 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 4e-14
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 19/128 (14%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI-----------------KDAEVIQE 693
D P + A A T V EG+ AIK+ + +
Sbjct: 148 DMLTEPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLGYDRMAA 207
Query: 694 VRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGL 751
+R VG +++ + + A++FG +I++ + Y EEPV N + + ++ +
Sbjct: 208 IRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELGIFYYEEPVMPLNPAQMKQVADKVNI 267
Query: 752 PVALDETI 759
P+A E I
Sbjct: 268 PLAAGERI 275
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} Length = 410 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 5e-14
Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 17/126 (13%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI---------------KDAEVIQEVR 695
S E ++A VE GF AIKL V P+ + VR
Sbjct: 145 FEEGSNEEYIAVAREAVERGFDAIKLDVDDITGPLHRDFWNGAISPREHEAMVARVAAVR 204
Query: 696 KKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPV 753
+ VG +E+ +D + + ++ F ++ L ++EEP N + + + + P+
Sbjct: 205 EAVGPEVEVAIDMHGRFDIPSSIRFARAMEPFGLLWLEEPTPPENLDALAEVRRSTSTPI 264
Query: 754 ALDETI 759
E +
Sbjct: 265 CAGENV 270
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* Length = 409 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 2e-13
Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 24/133 (18%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI------------------------K 686
V A E F AIK + D
Sbjct: 139 PPVTDLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNVDRKVLRN 198
Query: 687 DAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYC 746
++ +R G +E+ +D N N + L+ + D DL ++E + + +
Sbjct: 199 LRAHLEALRDGAGPDVEILLDLNFNAKPEGYLKILRELADFDLFWVEIDSYSPQGLAYVR 258
Query: 747 EESGLPVALDETI 759
S P++ ET+
Sbjct: 259 NHSPHPISSCETL 271
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} Length = 403 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 5e-13
Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 19/128 (14%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI-----------------KDAEVIQE 693
S E A A V EG+ A+K+ V E ++
Sbjct: 142 KSKGRKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVERVEA 201
Query: 694 VRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGL 751
+R VG +++ V+ + + A++F I++ ++ + EE N + + ++ +
Sbjct: 202 IRNAVGPDVDIIVENHGHTDLVSAIQFAKAIEEFNIFFYEEINTPLNPRLLKEAKKKIDI 261
Query: 752 PVALDETI 759
P+A E I
Sbjct: 262 PLASGERI 269
|
| >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* Length = 404 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 6e-13
Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 25/158 (15%)
Query: 663 ATTLVEEGFTAIKLKVAR-----RADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEA 717
+ GF K+ + K+ E + +R++VG L D + A
Sbjct: 167 PDLAQKMGFIGGKMPLHHGPSEGEEGLKKNLEELATMRERVGPDFWLMFDCWMSLDLNYA 226
Query: 718 LEFGFLIKDCDLQYIEEPVQNEEDI-----IKYCEESGLPVALDE---TIDKFQKDPLNM 769
++ L++IEE + +D ++ +G+ V E T F+ +
Sbjct: 227 TRLARGAREYGLKWIEEALP-PDDYWGYAELRRNAPTGMMVTTGEHEATRWGFRM----L 281
Query: 770 LEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHG 805
LE G I I+P V GG I+ A H
Sbjct: 282 LEM----GCCDI-IQPDVGWCGGVTELLKISALADAHN 314
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 7e-13
Identities = 91/630 (14%), Positives = 178/630 (28%), Gaps = 180/630 (28%)
Query: 127 RKLLASFLETEQNILFLDHLDHALLSESVKDWI---QFDVIIQIGSRITSKRISQMIEEC 183
+ +L+ F + F+D+ D + + K + + D II ++
Sbjct: 19 KDILSVFEDA-----FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG---------- 63
Query: 184 FPCTYILVDNHPCRHDPSHSVTHRIQSTIVQ-FVDFLLKVQVPHRSSKWCSFLRALDMMV 242
T L Q +VQ FV+ +L++ S + R MM
Sbjct: 64 ---TLRLFW-----------TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 243 ASEISF--------QICADYSLTEPHVAHELSRALT---SNSALFV-GNSMAIRDLDM-- 288
I Q+ A Y+++ +L +AL + + G +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG---------VLG 160
Query: 289 YGRNWTTCTHTVADIMLNSEFPHQ--WIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCV 346
G+ W + + + W+ + N + + + + + N
Sbjct: 161 SGKTWVA-LDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQKLLYQIDPN---WTS 215
Query: 347 VGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYF---- 402
D S + ++ ++R +L + LL + + + + F
Sbjct: 216 RSDHSSNIKLR-IHSIQAELRR--LLKSKPYEN-----CLLVLLNVQNAKAWN-AFNLSC 266
Query: 403 ---YTTHNISIQNLCLAHGLNHVQVK------TKVELEE--------------------- 432
TT + + A H+ + T E++
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 433 --ALSM--------------SQHLGTDRVIEV-ESCIDA--NATFHSMLRKFA--RQSAD 471
LS+ +H+ D++ + ES ++ A + M + + SA
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 472 HTLNVLS------QFSVPDTISC-----SLSICKICRMEYSLYRIQL--CAPPTSSY--- 515
+LS S + SL + S+ I L + Y
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 516 ---IDHNRSRFCREGFILSLYLEDG----SVGYGEVAPLEIHKENLLDAEE--QLR--FL 564
+DH + L D +G+ H +N+ E R FL
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH--------HLKNIEHPERMTLFRMVFL 498
Query: 565 -LHFMTGAKISYFLPLLKGSFSSWIWSTLG---------IPACEIFPSVRCGLEMAILNA 614
F+ KI + S S I +TL + + + +
Sbjct: 499 DFRFL-EQKIRHDSTAWNASGS--ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
Query: 615 IAVKHGSSFLNIL-----YPLTEIDEEISK 639
S + ++L I EE K
Sbjct: 556 EENLICSKYTDLLRIALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 3e-10
Identities = 61/457 (13%), Positives = 134/457 (29%), Gaps = 132/457 (28%)
Query: 2 ILTTLDSAVHWAT----SSPYGPV--------HINCPFREPLDNS-----PKHWMSSCLK 44
+ +D + W +SP + I+ + D+S H + + L+
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 45 GL--------------DIWTSS-IEPF---------TKYIQV---------QH---SHAC 68
L ++ + F T++ QV H H
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 69 KSYTYCQMAEVLELVQGVN---------KGLLLVGAVHNEDEIWAVL--HLARHIRWP-V 116
+ T ++ +L ++ I + LA W V
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-----IAESIRDGLATWDNWKHV 350
Query: 117 VADILSGLRLRKLLASFLE----TEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRIT 172
D +L ++ S L E +F L ++ S I ++ I +
Sbjct: 351 NCD-----KLTTIIESSLNVLEPAEYRKMFDR-L--SVFPPSAH--IPTILLSLIWFDVI 400
Query: 173 SKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP-----HR 227
+ ++ + Y LV+ P T I S + LKV++ HR
Sbjct: 401 KSDVMVVVNKL--HKYSLVEKQPKES------TISIPS-----IYLELKVKLENEYALHR 447
Query: 228 S--SKWCSFLRALDMMVASEISFQICADYSLTEPHVAHELSRA-LTSNSALFVGNSMAIR 284
S + + + D + ++ Y + H+ H L LF M
Sbjct: 448 SIVDHY-NIPKTFD---SDDLIPPYLDQYFYS--HIGHHLKNIEHPERMTLF---RMVFL 498
Query: 285 DLD-------MYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAV 337
D W + ++ + + +F +I + + L++ + F
Sbjct: 499 DFRFLEQKIRHDSTAW-NASGSILNTLQQLKFYKPYICDNDPK----YERLVNAILDFLP 553
Query: 338 GCNKHVL-----CVVGDISFLHDTNGLAILKQRMKRK 369
++++ ++ I+ + + + + ++
Sbjct: 554 KIEENLICSKYTDLL-RIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 2e-08
Identities = 82/604 (13%), Positives = 161/604 (26%), Gaps = 205/604 (33%)
Query: 423 QVKTKVELEEALSMSQHL-GTDRVIE-------------VESCIDANATFHSMLRKFARQ 468
+ +K E++ + + GT R+ VE + N F ++ +
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF--LMSPIKTE 101
Query: 469 SADHTLNVLSQFSVPDTISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGF 528
++ Y R +L + +N SR
Sbjct: 102 QRQPSMM---------------------TRMYIEQRDRLYNDN-QVFAKYNVSR---LQP 136
Query: 529 ILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGA-KISYFLPL-------L 580
L L ++ LL+ L+ + G+ K + L +
Sbjct: 137 YLKL------------------RQALLELRPAKNVLIDGVLGSGKTW--VALDVCLSYKV 176
Query: 581 KGSFSSWI-WSTLGIPACEIFPSVRC---GLEMAILNAIAVKHGSSFL-------NILYP 629
+ I W L C + +L + + ++ NI
Sbjct: 177 QCKMDFKIFWLNLK----------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 630 LTEIDEEISK--RSTSIKICALI-D--SNKSPVEVASI-ATTLVEEGFTAIKLKVARRAD 683
+ I E+ + +S + C L+ N ++ L+ T
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL----TT---------- 272
Query: 684 PIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIK--DCDLQYIEEPVQNEED 741
+ +V + I L + T E L+K DC Q + P +
Sbjct: 273 --RFKQVTDFLSAATTTHISL-DHHSMTLTPDEVKS--LLLKYLDCRPQ--DLPRE---- 321
Query: 742 IIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGI--VAIVIKPSVIGGFENAGLIAR 799
+ P L I + +D L + + H + +I+ S+
Sbjct: 322 -----VLTTNPRRLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESSL------------ 363
Query: 800 WAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYL-CKVMNRELCPPVAQGLGTYQW 858
E E + + V P L W
Sbjct: 364 ------------NVLEPA-------------EYRKMFDRLSVFPPSAHIP-TILLSLI-W 396
Query: 859 LKEDVTTDPISI---CHNSCRGFVEASVAKATHILQNLQINNDVICK----TSMEEQVL- 910
+ + +D + + H VE ++T + ++ + ++ K ++ ++
Sbjct: 397 F-DVIKSDVMVVVNKLHK--YSLVEKQPKESTISIPSIYL--ELKVKLENEYALHRSIVD 451
Query: 911 RYQ---------LNVNSKD--FCSFI----KVQEIGQRIDIQDNILLFLHGFLG-----T 950
Y L D F S I K E +R+ + + L FL
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-FLEQKIRHD 510
Query: 951 GEEW 954
W
Sbjct: 511 STAW 514
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 7e-04
Identities = 37/223 (16%), Positives = 71/223 (31%), Gaps = 74/223 (33%)
Query: 739 EEDIIKYCEESGLPVALDETIDKFQ-KDPLNML------EKYAHPGIVAIVIKPSVIGGF 791
E +Y + L V D +D F KD +M E+ H I++ + G
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-----IIMSKDAVSG- 63
Query: 792 ENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQ 851
+F + L Q + K + L
Sbjct: 64 ------------------------------TLRLFWTLLSKQEEMVQKFVEEVLRI---- 89
Query: 852 GLGTYQWLKEDVTTDPISICHNSCRGFVEASVAKATHILQNLQINNDVICKTSMEEQVLR 911
Y++L + T+ + S+ +I Q ++ ND QV
Sbjct: 90 ---NYKFLMSPIKTEQR-----------QPSMMTRMYIEQRDRLYNDN--------QVFA 127
Query: 912 YQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEW 954
+ NV+ ++K+++ + + + + G LG+G+ W
Sbjct: 128 -KYNVSRLQ--PYLKLRQALLEL--RPAKNVLIDGVLGSGKTW 165
|
| >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A Length = 415 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 9e-13
Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 26/154 (16%)
Query: 667 VEEGFTAIKLKVAR-----RADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFG 721
E GF K+ A KDA ++ ++R+K G L +D + A +
Sbjct: 183 KEMGFIGGKMPTHWGPHDGDAGIRKDAAMVADMREKCGPDFWLMLDCWMSQDVNYATKLA 242
Query: 722 FLIKDCDLQYIEEPVQNEEDI-----IKYCEESGLPVALDE---TIDKFQKDPLNMLEKY 773
+L++IEE + + +K +G+ V E T+ F+ + E
Sbjct: 243 HACAPFNLKWIEECLP-PQQYEGYRELKRNAPAGMMVTSGEHHGTLQSFRT----LAETG 297
Query: 774 AHPGIVAIVIKPSV--IGGFENAGLIARWAQRHG 805
+++P V GG IA A+ G
Sbjct: 298 ID------IMQPDVGWCGGLTTLVEIAALAKSRG 325
|
| >3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A Length = 455 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 1e-12
Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 24/157 (15%)
Query: 663 ATTLVEEGFTAIKLKVAR-----RADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEA 717
T GF K+ + K+ E +++ R+ VG + VD +
Sbjct: 173 PTAAKAMGFWGGKVPLPFCPDDGHEGLRKNVEFLRKHREAVGPDFPIMVDCYMSLNVSYT 232
Query: 718 LEFGFLIKDCDLQYIEEPVQNEEDIIKYCE----ESGLPVALDE---TIDKFQKDPLNML 770
+E D ++ + EE + +D + + E + F+K ++
Sbjct: 233 IELVKACLDLNINWWEECLS-PDDTDGFALIKRAHPTVKFTTGEHEYSRYGFRK----LV 287
Query: 771 EKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHG 805
E + I I+P V +GG +A A +
Sbjct: 288 EG----RNLDI-IQPDVMWLGGLTELLKVAALAAAYD 319
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* Length = 410 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 1e-12
Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 24/133 (18%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI----------------------KDA 688
+P E A A +++G+ AIK+
Sbjct: 146 HILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGE 205
Query: 689 EVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNEEDIIKYC 746
I +R+ +G ++ V+ + A++F I+ + EEP+ N +++ K
Sbjct: 206 ARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRIFLYEEPIHPLNSDNMQKVS 265
Query: 747 EESGLPVALDETI 759
+ +P+A E
Sbjct: 266 RSTTIPIATGERS 278
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} Length = 392 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 1e-12
Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 32/180 (17%)
Query: 649 LIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI----------------KDAEVIQ 692
+ +P E A ++EG+ A+K + ++
Sbjct: 131 WYGAADTPDEFARAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVK 190
Query: 693 EVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESG 750
VR G IEL VD + T E + F I + D+ ++EEP + + E+
Sbjct: 191 AVRDAAGPEIELMVDLSGGLTTDETIRFCRKIGELDICFVEEPCDPFDNGALKVISEQIP 250
Query: 751 LPVALDE---TIDKFQKDPLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHG 805
LP+A+ E T F+ + E I I+P + GG I A+ +
Sbjct: 251 LPIAVGERVYTRFGFR----KIFEL----QACGI-IQPDIGTAGGLMETKKICAMAEAYN 301
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A Length = 400 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 2e-12
Identities = 25/146 (17%), Positives = 56/146 (38%), Gaps = 14/146 (9%)
Query: 628 YPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI-- 685
+ + + + D N +A +L+E+G TA+K+ A
Sbjct: 125 EYIKKATGQQTANYGLSGGKDYDDLNGFLHRADELAHSLLEDGITAMKIWPFDAAAEKTR 184
Query: 686 ----------KDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEP 735
E +++RK VG ++++ V+ + W A++ + + E+P
Sbjct: 185 GQYISMPDLKSALEPFEKIRKAVGDKMDIMVEFHSMWQLLPAMQIAKALTPYQTFWHEDP 244
Query: 736 V--QNEEDIIKYCEESGLPVALDETI 759
+ + + +Y S P++ ET+
Sbjct: 245 IKMDSLSSLTRYAAVSPAPISASETL 270
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} Length = 422 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 3e-12
Identities = 26/181 (14%), Positives = 67/181 (37%), Gaps = 38/181 (20%)
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVA----------------------RRADPIKDAEVI 691
++ + + L+ +G+ I+ ++ ++ E+
Sbjct: 153 ETLEALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMF 212
Query: 692 QEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEES 749
+R+K G ++ + D + Q+A++ ++ +IE+ + + + ++S
Sbjct: 213 HALREKYGWKLHILHDVHERLFPQQAVQLAKQLEPFQPYFIEDILPPQQSAWLEQVRQQS 272
Query: 750 GLPVALDE---TIDKFQKDPLNMLEKYAHPGIVAIVIKP--SVIGGFENAGLIARWAQRH 804
+P+AL E ++ +++ + I+ S IGG A +A Q
Sbjct: 273 CVPLALGELFNNPAEWH----DLIVN----RRIDF-IRCHVSQIGGITPALKLAHLCQAF 323
Query: 805 G 805
G
Sbjct: 324 G 324
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A Length = 394 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 5e-12
Identities = 32/178 (17%), Positives = 67/178 (37%), Gaps = 20/178 (11%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKV--ARRADPIKDAEVIQEVRKKVGHRIELRVDANRNW 712
+ A + A+K+ V + A ++E+R +GH ++ VD +
Sbjct: 157 AIKGYAPLLEKAKAHNIRAVKVCVPIKADWSTKEVAYYLRELRGILGHDTDMMVDYLYRF 216
Query: 713 T-YQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQKDP 766
T + E I+D +L + E +Q + K E + + E T + ++
Sbjct: 217 TDWYEVARLLNSIEDLELYFAEATLQHDDLSGHAKLVENTRSRICGAEMSTTRFEAEE-- 274
Query: 767 LNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
+ K G V + ++ GG I A + + V+ +++G+ +A
Sbjct: 275 --WITK----GKVHL-LQSDYNRCGGLTELRRITEMATANN-VQVMPHNWKTGITSAA 324
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 3s47_A 3gy1_A Length = 401 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 1e-11
Identities = 23/181 (12%), Positives = 62/181 (34%), Gaps = 38/181 (20%)
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVARRADPI----------------------KDAEVI 691
+ + + +E+G+ I+ ++ +
Sbjct: 132 DTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMF 191
Query: 692 QEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEES 749
+ +R+K G++ + D + +A++F ++ +IE+ + E + +S
Sbjct: 192 KSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQS 251
Query: 750 GLPVALDE---TIDKFQKDPLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRH 804
+ + L E ++++ +++ + I+ V IGG A + Q
Sbjct: 252 SVSLGLGELFNNPEEWK----SLIAN----RRIDF-IRCHVSQIGGITPALKLGHLCQNF 302
Query: 805 G 805
G
Sbjct: 303 G 303
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} Length = 269 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
L+FLHGFL + ++ + + I+IDLPGHG
Sbjct: 19 LVFLHGFLSDSRTYHNHIEKFTDNYHVITIDLPGHGED 56
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* Length = 440 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 43/213 (20%), Positives = 79/213 (37%), Gaps = 50/213 (23%)
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVAR--------------------------------- 680
VEV A +EEG+ I+ ++
Sbjct: 154 ADEVEVEDSARAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAP 213
Query: 681 ------RADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEE 734
A + +R K+G +EL DA+ T A+ ++ L ++E+
Sbjct: 214 GIYFDPEAYAKSIPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLED 273
Query: 735 PV--QNEEDIIKYCEESGLPVALDETI-DKFQKDPLNMLEKYAHPGIVAIV-IKPSVIGG 790
PV +N E + ++S P+A+ E + + PL ++ ++ + S IGG
Sbjct: 274 PVAPENTEWLKMLRQQSSTPIAMGELFVNVNEWKPL--IDN----KLIDYIRCHISSIGG 327
Query: 791 FENAGLIARWAQRHG-KMAVVSAAFESGLGLSA 822
A IA +++ +G + A S S +G+ A
Sbjct: 328 ITPAKKIAIYSELNGVRTAWHSPGDISPIGVCA 360
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A Length = 424 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 3e-10
Identities = 24/139 (17%), Positives = 44/139 (31%), Gaps = 33/139 (23%)
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVARRADPIKD-------------------------- 687
K ++G+ AI+++
Sbjct: 148 KDLDSTLEAVRKAKDKGYKAIRVQCGIPGIAKTYGVSTNTKSYEPADADLPSVEVWSTEK 207
Query: 688 -----AEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNEE 740
+V VRK+ G I L D + T EA G ++ L ++E+ V +N+E
Sbjct: 208 YLNYIPDVFAAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYHLFWMEDAVPAENQE 267
Query: 741 DIIKYCEESGLPVALDETI 759
+ + P+A+ E
Sbjct: 268 SFKLIRQHTTTPLAVGEVF 286
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 Length = 264 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 4e-10
Identities = 13/39 (33%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGS 978
++ +HG LG+G +W P++ ++ + +++DLPGHG +
Sbjct: 19 VVLVHGLLGSGADWQPVLSHLARTQCAALTLDLPGHGTN 57
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* Length = 418 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 5e-10
Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 33/138 (23%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPI----------------------------- 685
E ++ G+ AI+ +
Sbjct: 143 DIAETVEAVGHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDTRKA 202
Query: 686 --KDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNEED 741
++ +E+RK G L D + +T QEA G +++ L ++E+ +N+E
Sbjct: 203 LNYVPKLFEELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQLFWLEDCTPAENQEA 262
Query: 742 IIKYCEESGLPVALDETI 759
+ + P+A+ E
Sbjct: 263 FRLVRQHTVTPLAVGEIF 280
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4fi4_A 3thu_A Length = 425 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 20/139 (14%), Positives = 45/139 (32%), Gaps = 33/139 (23%)
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVARRADPI---------------------------- 685
++ + + A G+ AI+L+
Sbjct: 149 ETIEDTIAEAVKYKAMGYKAIRLQTGVPGLASTYGVSKDKMFYEPADNDLPTENIWSTAK 208
Query: 686 ---KDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNEE 740
++ + R+ +G + L D + T EA G ++ L ++E+ V +N+
Sbjct: 209 YLNSVPKLFERAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYRLFWLEDSVPAENQA 268
Query: 741 DIIKYCEESGLPVALDETI 759
+ + P+A+ E
Sbjct: 269 GFRLIRQHTTTPLAVGEIF 287
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} Length = 426 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 35/140 (25%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVA---------------RRADPIKDA----------- 688
S EV ++GF AI+++ +P
Sbjct: 149 SIDEVLDDYAKHRDQGFKAIRVQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWSTE 208
Query: 689 -------EVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNE 739
++ + VR K G L D + T EA FG ++D L ++E+P +N+
Sbjct: 209 KYLDFTPKLFEAVRDKFGFNEHLLHDMHHRLTPIEAARFGKSVEDYRLFWMEDPTPAENQ 268
Query: 740 EDIIKYCEESGLPVALDETI 759
+ + P+A+ E
Sbjct: 269 ACFRLIRQHTVTPIAVGEVF 288
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A Length = 441 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 3e-09
Identities = 66/391 (16%), Positives = 128/391 (32%), Gaps = 69/391 (17%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
I +E R S + + +L + GYG V + +
Sbjct: 3 TIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGRGNDV 62
Query: 554 LLDAEEQLRFLLHFMTGAKI-----SYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLE 608
A L + ++ K+ ++ L S W+ G+ I +
Sbjct: 63 QTAAVAALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAI-----GAVI 117
Query: 609 MAILNAIAVKHGSSFLNIL--------------YPLT-----EIDEEISKRSTSIK---I 646
A + A + L+ + I + + +
Sbjct: 118 NAAWDLAARAANKPLWRFIAELTPEQLVDTIDFRYLSDALTRDEALAILRDAQPQRAART 177
Query: 647 CALIDS------------NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEV 694
LI+ S ++ +A V +GF IKLKV A+ D +
Sbjct: 178 ATLIEQGYPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKV--GANVQDDIRRCRLA 235
Query: 695 RKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCE----ESG 750
R +G I + VDAN+ W A+++ + + D+ +IEEP + +D++ + +
Sbjct: 236 RAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWIEEPT-SPDDVLGHAAIRQGITP 294
Query: 751 LPVALDE---TIDKFQKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHGK 806
+PV+ E F+ +L+ A V ++ I + +GG I A + G
Sbjct: 295 VPVSTGEHTQNRVVFK----QLLQAGA----VDLIQIDAARVGGVNENLAILLLAAKFGV 346
Query: 807 ------MAVVSAAFESGLGLSAYIIFSSYLE 831
V L ++ ++ + +E
Sbjct: 347 RVFPHAGGVGLCELVQHLAMADFVAITGKME 377
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} Length = 441 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 6e-09
Identities = 39/180 (21%), Positives = 66/180 (36%), Gaps = 25/180 (13%)
Query: 667 VEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD 726
+++G+T K+KV D D Q +R +G L +DAN+ W EA+E+ +
Sbjct: 213 LKDGWTRFKVKVGA--DLQDDMRRCQIIRDMIGPEKTLMMDANQRWDVPEAVEWMSKLAK 270
Query: 727 CDLQYIEEPVQNE-----EDIIKYCEESGLPVALDE---TIDKFQKDPLNMLEKYAHPGI 778
+IEEP + I K G+ +A E F+ +L+
Sbjct: 271 FKPLWIEEPTSPDDILGHATISKALVPLGIGIATGEQCHNRVIFK----QLLQA----KA 322
Query: 779 VAIV-IKPSVIGGFENAGLIARWAQRHGKM------AVVSAAFESGLGLSAYIIFSSYLE 831
+ + I +G + A++ V L + YI S+ LE
Sbjct: 323 LQFLQIDSCRLGSVNENLSVLLMAKKFEIPVCPHAGGVGLCELVQHLIIFDYISVSASLE 382
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} Length = 306 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
L+ LHG L + W P + S R ++D+ G
Sbjct: 70 LVLLHGALFSSTMWYPNIADWSSKYRTYAVDIIGDKNK 107
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 Length = 258 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
L+ LHG+ E W I + +S +DLPG G S
Sbjct: 16 LVLLHGWGLNAEVWRCIDEELSSHFTLHLVDLPGFGRS 53
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* Length = 276 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
+L L G+ + +++ + R I + GHG S
Sbjct: 30 ILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLS 67
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} Length = 314 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
+LF HG + P+M +S I++D GHG S
Sbjct: 71 MLFFHGITSNSAVFEPLMIRLSDRFTTIAVDQRGHGLS 108
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} Length = 272 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 7e-07
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA--RCISIDLPGHGGS 978
++FLHG + + +S + I +DLPG G S
Sbjct: 24 IIFLHGLSLDKQSTCLFFEPLSNVGQYQRIYLDLPGMGNS 63
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A Length = 255 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++ +HG G+ + + + + I +D+ HG S
Sbjct: 19 IVLVHGLFGSLDNLGVLARDLVNDHNIIQVDVRNHGLS 56
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} Length = 266 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++ + W P + A+S R + D GHG S
Sbjct: 29 IVLSNSLGTDLSMWAPQVAALSKHFRVLRYDTRGHGHS 66
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} Length = 285 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
+L L G ++ + ++G R + ++ G G S
Sbjct: 32 VLCLPGLTRNARDFEDLATRLAGDWRVLCPEMRGRGDS 69
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} Length = 268 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++ + G G+G W+P + + + + D G G +
Sbjct: 18 VVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNN 55
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} Length = 292 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 4e-06
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 937 QDNILLFLHGF--LGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
+ +FL G T + + I+ + S ++ID P G S
Sbjct: 40 GNPCFVFLSGAGFFSTADNFANIIDKLPDSIGILTIDAPNSGYS 83
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} Length = 245 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSK 979
LLF+HG + + + K + CI +DL GHG SK
Sbjct: 19 LLFVHGSGCNLKIFGELEKYLED-YNCILLDLKGHGESK 56
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} Length = 262 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++ + G L T P+ + ++ I D G G S
Sbjct: 26 VVLVGGALSTRAGGAPLAERLAPHFTVICYDRRGRGDS 63
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} Length = 264 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 7/38 (18%), Positives = 12/38 (31%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
L L G+ + + ++ I D GH
Sbjct: 24 LFLLSGWCQDHRLFKNLAPLLARDFHVICPDWRGHDAK 61
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} Length = 266 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 6e-06
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
L + T W + A++ R + D GHG S
Sbjct: 30 LALSNSIGTTLHMWDAQLPALTRHFRVLRYDARGHGAS 67
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} Length = 278 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 6/38 (15%), Positives = 11/38 (28%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
L H + + + ++L G G S
Sbjct: 26 LCVTHLYSEYNDNGNTFANPFTDHYSVYLVNLKGCGNS 63
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} Length = 330 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++FLHG W ++ + +++DLPGHG S
Sbjct: 84 VIFLHGGGQNAHTWDTVIVGL--GEPALAVDLPGHGHS 119
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} PDB: 1va4_A 3hi4_A 3hea_A Length = 271 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
+LF HG+L + W M+ +S R I+ D G G S
Sbjct: 22 VLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRS 60
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A Length = 282 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 941 LLFLHGF---LGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++ +HG + W + A+S R I+ D+ G G +
Sbjct: 28 VILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFT 68
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P Length = 316 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVS--GSARCISIDLPGHGGS 978
LL LHG + W A+ R +++DL HG +
Sbjct: 41 LLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGET 80
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 Length = 285 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 941 LLFLHGF---LGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++ LHG W PI+ ++ + ++ DL G G S
Sbjct: 32 VVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFGQS 72
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} Length = 282 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
+L HGF W ++ + I D G G S
Sbjct: 31 VLLAHGFGCDQNMWRFMLPELEKQFTVIVFDYVGSGQS 68
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* Length = 271 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++F GF W + A R I D G G S
Sbjct: 23 IMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHS 60
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 Length = 273 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
++F HG+ + W M ++ R I+ D GHG S
Sbjct: 22 IVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRS 60
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 Length = 274 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
++F+HG+ G+ W +KAV + R I+ D GHG S
Sbjct: 22 VVFIHGWPLNGDAWQDQLKAVVDAGYRGIAHDRRGHGHS 60
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} Length = 281 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 8e-05
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
++ +HG+ +G W + A+ + R I+ D G G S
Sbjct: 30 VVLIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKS 68
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} Length = 286 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
+L +HG L G W + ++ R ++ DL GHG S
Sbjct: 29 VLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRS 67
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A Length = 291 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 941 LLFLHGF---LGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++ LHG + + + ++ +++D PG+G S
Sbjct: 39 VVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHS 79
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 Length = 296 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 8/41 (19%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 941 LLFLHGF---LGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++ +HG + W ++ ++ R I++D+ G G +
Sbjct: 39 VILIHGGGAGAESEGNWRNVIPILARHYRVIAMDMLGFGKT 79
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A Length = 456 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
++ +HGF +G W A+ + R I+ D G G S
Sbjct: 27 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQS 65
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* Length = 279 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKA-VSGSARCISIDLPGHGGS 978
++ +HG+ G W + ++ R I+ D G GGS
Sbjct: 26 VVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGS 64
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A Length = 277 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
++ +HGF +G W A+ + R I+ D G G S
Sbjct: 26 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQS 64
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} Length = 289 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 924 FIKVQEIGQRIDIQ-------DNILLFLHGFLGTGEEWIP----IMKAVSGSARCISIDL 972
F+ V+E G+ + I D ++ LHG W I V R I +D
Sbjct: 15 FLNVEEAGKTLRIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDC 74
Query: 973 PGHGGS 978
PG G S
Sbjct: 75 PGWGKS 80
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A Length = 254 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 938 DNILLFLHGFLGTGEE-WIPIMKAVSGSA-RCISIDLPGHGGS 978
D+ +L L G LG+GE + P +K ++ ++ D G+G S
Sbjct: 23 DHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHS 65
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A Length = 318 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++FLHG + W ++ + ARCI DL G G S
Sbjct: 46 VIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKS 83
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} Length = 315 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
+L +HG W + ++ + R I++D G S
Sbjct: 49 ILLMHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKS 87
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 Length = 275 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
++F HG+ + ++W M R I+ D GHG S
Sbjct: 24 VVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRS 62
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} Length = 330 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 6e-04
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA--RCISIDLPGHGGS 978
L+ LHG G ++ + A++ I D G G S
Sbjct: 57 LIVLHGGPGMAHNYVANIAALADETGRTVIHYDQVGCGNS 96
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A Length = 276 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
+ F HG+ + ++W + R ++ D GHG S
Sbjct: 25 IHFHHGWPLSADDWDAQLLFFLAHGYRVVAHDRRGHGRS 63
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A Length = 293 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 9e-04
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 941 LLFLHGFLGTGEEWIP--IMKAVSGSARCISIDLPGHGGS 978
++F+ G G G W P + ++ RCI+ D G G +
Sbjct: 46 VVFIAGRGGAGRTWHPHQVPAFLAAGYRCITFDNRGIGAT 85
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 983 | |||
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 100.0 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 100.0 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 100.0 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 4e8g_A | 391 | Enolase, mandelate racemase/muconate lactonizing e | 100.0 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3u9i_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 100.0 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 100.0 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 100.0 | |
| 2chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Cupriavidus | 100.0 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 3s5s_A | 389 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3ik4_A | 365 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 4hpn_A | 378 | Putative uncharacterized protein; enolase, enzyme | 100.0 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 100.0 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 100.0 | |
| 3qld_A | 388 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 100.0 | |
| 4h2h_A | 376 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 100.0 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 100.0 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 100.0 | |
| 4h83_A | 388 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 3vc5_A | 441 | Mandelate racemase/muconate lactonizing protein; d | 100.0 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 100.0 | |
| 3vdg_A | 445 | Probable glucarate dehydratase; enolase, magnesium | 100.0 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 100.0 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 100.0 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 4h1z_A | 412 | Enolase Q92ZS5; dehydratase, magnesium binding sit | 100.0 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 100.0 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 100.0 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 100.0 | |
| 1wue_A | 386 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 100.0 | |
| 3va8_A | 445 | Probable dehydratase; enolase, magnesium binding s | 100.0 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 100.0 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 100.0 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 100.0 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 100.0 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 100.0 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 1wuf_A | 393 | Hypothetical protein LIN2664; structural genomics, | 100.0 | |
| 3v5c_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 100.0 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 100.0 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 100.0 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 100.0 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 100.0 | |
| 4hnl_A | 421 | Mandelate racemase/muconate lactonizing enzyme; de | 100.0 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 100.0 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 100.0 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 100.0 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 100.0 | |
| 3ijl_A | 338 | Muconate cycloisomerase; enolase superfamily, dipe | 100.0 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 100.0 | |
| 4a35_A | 441 | Mitochondrial enolase superfamily member 1; isomer | 100.0 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 100.0 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 100.0 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 100.0 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 100.0 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 100.0 | |
| 4e4f_A | 426 | Mannonate dehydratase; magnesium binding, enzyme f | 100.0 | |
| 3cyj_A | 372 | Mandelate racemase/muconate lactonizing enzyme-LI | 100.0 | |
| 3p0w_A | 470 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 4dxk_A | 400 | Mandelate racemase / muconate lactonizing enzyme p | 100.0 | |
| 3mzn_A | 450 | Glucarate dehydratase; lyase, structural genomics, | 100.0 | |
| 3pfr_A | 455 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 100.0 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 100.0 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 100.0 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 100.0 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 100.0 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 100.0 | |
| 2pge_A | 377 | MENC; OSBS, NYSGXRC, PSI-II, structural genomics, | 100.0 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 100.0 | |
| 4g8t_A | 464 | Glucarate dehydratase; enolase, enzyme function IN | 100.0 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 100.0 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 100.0 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 100.0 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 100.0 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 100.0 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 100.0 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 100.0 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 100.0 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 100.0 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 100.0 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 100.0 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 100.0 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 100.0 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 100.0 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 100.0 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 100.0 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 100.0 | |
| 3ekg_A | 404 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 3fxg_A | 455 | Rhamnonate dehydratase; structural gemomics, enola | 100.0 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 100.0 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 100.0 | |
| 2okt_A | 342 | OSB synthetase, O-succinylbenzoic acid synthetase; | 100.0 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 100.0 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 100.0 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 100.0 | |
| 4gfi_A | 329 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 1jpd_X | 324 | L-Ala-D/L-Glu epimerase; enolase superfamily, muco | 100.0 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 100.0 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 100.0 | |
| 1r6w_A | 322 | OSB synthase, O-succinylbenzoate synthase, OSBS; e | 100.0 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 100.0 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 100.0 | |
| 3caw_A | 330 | O-succinylbenzoate synthase; structural genomics, | 100.0 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 100.0 | |
| 1ovm_A | 552 | Indole-3-pyruvate decarboxylase; thiamine diphosph | 100.0 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 100.0 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 100.0 | |
| 2p3z_A | 415 | L-rhamnonate dehydratase; enolase, structural geno | 100.0 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 100.0 | |
| 2ozt_A | 332 | TLR1174 protein; structural genomics, O-succinylbe | 100.0 | |
| 1kcz_A | 413 | Beta-methylaspartase; beta zigzag, alpha/beta-barr | 100.0 | |
| 1kko_A | 413 | 3-methylaspartate ammonia-lyase; enolase superfami | 100.0 | |
| 2opj_A | 327 | O-succinylbenzoate-COA synthase; TIM barrel, struc | 100.0 | |
| 2pa6_A | 427 | Enolase; glycolysis, lyase, magnesium, metal-bindi | 100.0 | |
| 2fym_A | 431 | Enolase; RNA degradosome, enolase, lyase; 1.60A {E | 100.0 | |
| 1w6t_A | 444 | Enolase; bacterial infection, surface protein, moo | 100.0 | |
| 2ptz_A | 432 | Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypano | 100.0 | |
| 3uj2_A | 449 | Enolase 1; enzyme function initiative, EFI, lyase; | 100.0 | |
| 3tqp_A | 428 | Enolase; energy metabolism, lyase; 2.20A {Coxiella | 100.0 | |
| 3qn3_A | 417 | Enolase; structural genomics, center for structura | 100.0 | |
| 2al1_A | 436 | Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: | 100.0 | |
| 2akz_A | 439 | Gamma enolase, neural; fluoride inhibition, negati | 100.0 | |
| 3qtp_A | 441 | Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Ent | 99.87 | |
| 3otr_A | 452 | Enolase; structural genomics, center for structura | 99.82 | |
| 3cf4_G | 170 | Acetyl-COA decarboxylase/synthase epsilon subunit; | 99.69 | |
| 2c42_A | 1231 | Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, | 99.69 | |
| 1w85_A | 368 | Pyruvate dehydrogenase E1 component, alpha subunit | 99.61 | |
| 1umd_A | 367 | E1-alpha, 2-OXO acid dehydrogenase alpha subunit; | 99.6 | |
| 1ytl_A | 174 | Acetyl-COA decarboxylase/synthase complex epsilon | 99.6 | |
| 1qs0_A | 407 | 2-oxoisovalerate dehydrogenase alpha-subunit; hete | 99.59 | |
| 2bfd_A | 400 | 2-oxoisovalerate dehydrogenase alpha subunit; oxid | 99.56 | |
| 2ozl_A | 365 | PDHE1-A type I, pyruvate dehydrogenase E1 componen | 99.53 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 99.5 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 99.46 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 99.44 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 99.43 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 99.42 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, t | 99.42 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 99.41 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 99.41 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 99.4 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 99.4 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 99.38 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta typ | 99.29 | |
| 3rim_A | 700 | Transketolase, TK; TPP, transferase; HET: TPP; 2.4 | 98.98 | |
| 2yic_A | 868 | 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 | 98.97 | |
| 2xt6_A | 1113 | 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET | 98.84 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 98.82 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 98.82 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 98.71 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 98.67 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 98.66 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 98.66 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 98.66 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 98.64 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 98.62 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 98.6 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 98.58 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 98.58 | |
| 2jgd_A | 933 | 2-oxoglutarate dehydrogenase E1 component; flavopr | 98.58 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 98.56 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 98.56 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 98.56 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 98.55 | |
| 2qtc_A | 886 | Pyruvate dehydrogenase E1 component; thiamin dipho | 98.55 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 98.54 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 98.54 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 98.53 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 98.53 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 98.53 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 98.52 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 98.52 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 98.5 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 98.5 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 98.47 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 98.45 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 98.45 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 98.42 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 98.42 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 98.39 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 98.38 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 98.37 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 98.37 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 98.37 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 98.36 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 98.33 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 98.31 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 98.3 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 98.3 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 98.29 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 98.28 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 98.27 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 98.27 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 98.26 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 98.23 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 98.22 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 98.21 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 98.21 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 98.2 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 98.19 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 98.18 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 98.15 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 98.14 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 98.14 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 98.12 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 97.39 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 98.04 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 98.03 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 98.02 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 98.02 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 97.95 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 97.95 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 97.93 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 97.93 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 97.92 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 97.9 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 97.89 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 97.89 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 97.88 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 97.86 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 97.84 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 97.84 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 97.84 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 97.83 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 97.83 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 97.82 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 97.82 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 97.76 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 97.68 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 97.66 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 97.66 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 97.65 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 97.64 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 97.64 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 97.62 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 97.61 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 97.58 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 97.57 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 97.53 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 97.52 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 97.52 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 97.5 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 97.49 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 97.49 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.48 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 97.46 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 97.43 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 97.42 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 97.34 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 97.34 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 97.34 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 97.34 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 97.23 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 97.21 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 97.19 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 97.19 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 97.17 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 97.16 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 97.15 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 97.14 | |
| 3ahc_A | 845 | Phosphoketolase, xylulose 5-phosphate/fructose 6-p | 97.09 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 97.09 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 97.06 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 97.06 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 97.06 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 97.03 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 97.0 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 96.98 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 96.97 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 96.95 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 96.95 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 96.95 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 96.94 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 96.93 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 96.92 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 96.92 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 96.91 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 96.9 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 96.89 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 96.88 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 96.88 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 96.86 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 96.84 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 96.79 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 96.76 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 96.76 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 96.7 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 96.69 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 96.68 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 96.64 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 96.63 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 96.62 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 96.61 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 96.59 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 96.54 | |
| 2cb9_A | 244 | Fengycin synthetase; thioesterase, non-ribosomal p | 96.38 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 96.33 | |
| 1jmk_C | 230 | SRFTE, surfactin synthetase; thioesterase, non-rib | 96.3 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 96.21 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 96.19 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 96.1 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 96.07 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 96.04 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 96.03 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 96.01 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 95.98 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 95.93 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 95.82 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 95.78 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 95.76 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 95.72 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 95.69 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 95.68 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 95.57 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 95.5 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 95.46 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 95.45 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 95.42 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 95.27 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 95.26 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 95.13 | |
| 3tjm_A | 283 | Fatty acid synthase; thioesterase domain, fatty ac | 95.13 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 94.98 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 94.94 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 94.85 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 94.72 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 94.69 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 94.67 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 94.45 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 94.3 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 94.28 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 94.13 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 93.9 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 93.77 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 93.52 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 93.48 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 93.46 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 93.43 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 93.4 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 93.22 | |
| 1j8f_A | 323 | SIRT2, sirtuin 2, isoform 1, silencing INFO; gene | 93.04 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 93.0 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 92.91 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 92.89 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 92.85 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 92.82 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 92.52 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 92.24 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 92.09 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 91.95 | |
| 1o97_D | 320 | Electron transferring flavoprotein alpha-subunit; | 91.87 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 91.51 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 91.15 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 90.95 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 90.66 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 90.04 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 90.03 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 89.19 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 89.14 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 88.87 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 88.84 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 88.63 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 88.48 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 88.26 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 87.9 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 87.73 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 87.73 | |
| 3glr_A | 285 | NAD-dependent deacetylase sirtuin-3, mitochondria; | 87.72 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 87.63 | |
| 1s5p_A | 235 | NAD-dependent deacetylase; protein deacetylase, SI | 87.07 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 86.83 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 86.82 | |
| 2px6_A | 316 | Thioesterase domain; thioesaterse domain, orlistat | 86.76 | |
| 1q1a_A | 289 | HST2 protein; ternary complex, histone deacetylase | 86.33 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 86.23 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 86.21 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 86.05 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 85.86 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 85.45 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 85.26 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 85.18 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 84.9 | |
| 1efp_A | 307 | ETF, protein (electron transfer flavoprotein); ele | 84.68 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 84.54 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 84.51 | |
| 2hjh_A | 354 | NAD-dependent histone deacetylase SIR2; protein, s | 84.22 | |
| 1efv_A | 315 | Electron transfer flavoprotein; electron transport | 83.87 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 83.74 | |
| 1yc5_A | 246 | NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, | 83.58 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 83.4 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 83.31 | |
| 3riy_A | 273 | NAD-dependent deacetylase sirtuin-5; desuccinylase | 83.13 | |
| 4iao_A | 492 | NAD-dependent histone deacetylase SIR2; protein co | 82.91 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 82.86 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 82.82 | |
| 3k35_A | 318 | NAD-dependent deacetylase sirtuin-6; rossmann fold | 82.78 | |
| 1pno_A | 180 | NAD(P) transhydrogenase subunit beta; nucleotide b | 82.77 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 82.74 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 82.6 | |
| 1ma3_A | 253 | SIR2-AF2, transcriptional regulatory protein, SIR2 | 82.39 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 82.38 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 82.38 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 82.37 | |
| 1yd7_A | 395 | 2-keto acid:ferredoxin oxidoreductase subunit alph | 82.36 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 82.28 | |
| 2fsv_C | 203 | NAD(P) transhydrogenase subunit beta; NAD(P) trans | 82.2 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 82.18 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 82.09 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 81.79 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 81.52 | |
| 1d4o_A | 184 | NADP(H) transhydrogenase; nucleotide-binding fold, | 81.33 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 81.11 | |
| 1djl_A | 207 | Transhydrogenase DIII; rossmann fold dinucleotide | 81.07 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 80.9 | |
| 1m2k_A | 249 | Silent information regulator 2; protein-ligand com | 80.74 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 80.45 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 80.41 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 80.23 | |
| 3pki_A | 355 | NAD-dependent deacetylase sirtuin-6; ADP ribose, s | 80.22 |
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-63 Score=558.49 Aligned_cols=362 Identities=18% Similarity=0.224 Sum_probs=312.8
Q ss_pred ccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCc--C-cCcccHHHHHHHHHH-HH
Q 041113 490 LSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL--E-IHKENLLDAEEQLRF-LL 565 (983)
Q Consensus 490 ~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~--~-~~~~~~~~~~~~l~~-~~ 565 (983)
|++|||++|+++.+++||+.||.++.+.+ ..++.++|||+|++|++||||+.+. + +++++.+.+...++. +.
T Consensus 3 m~~MkI~~i~~~~~~~pl~~p~~~s~~~~----~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~ 78 (383)
T 3i4k_A 3 LSDLTIQKVESRILDVPLIRPHGFATTTS----TEQHILLVSVHLENGVIGYGEGVVPGGPWWGGESVETMKALVDGYLA 78 (383)
T ss_dssp --CCBEEEEEEEEEEEEEEEEEECSSCEE----EEEEEEEEEEEETTSCEEEEEECCSSSTTTTSCCHHHHHHHHHHTTH
T ss_pred CCCCEEEEEEEEEEeccccCCeEecceEE----EeeeEEEEEEEECCCCEEEEecccCCCCccCCCCHHHHHHHHHhhhh
Confidence 66799999999999999999999998764 4589999999999999999999876 2 556777777777754 89
Q ss_pred hHhccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeE
Q 041113 566 HFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIK 645 (983)
Q Consensus 566 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~ 645 (983)
|.++|+++.+++.++.. +++.+. ..++|++|||+|||||+||.+|+|||+||||.. +++|+
T Consensus 79 p~l~G~d~~~~~~~~~~-----l~~~~~-----~~~~A~said~ALwDl~gk~~g~Pv~~LLGg~~---------r~~v~ 139 (383)
T 3i4k_A 79 PVLIGRAVSELAGIMAD-----LERVVA-----RARYAKAAVDVAMHDAWARSLNVPVRDLLGGTV---------RDKVD 139 (383)
T ss_dssp HHHTTSBGGGHHHHHHH-----HHHHCC-----SCHHHHHHHHHHHHHHHHHHTTSBGGGGTTCCS---------CSEEE
T ss_pred HHHcCCCccCHHHHHHH-----HHHHhc-----CCHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCC---------CCeEE
Confidence 99999999887665532 122111 257899999999999999999999999999976 57899
Q ss_pred EEEeecCCCCHHHHHHHHHHhhhc-CCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhc
Q 041113 646 ICALIDSNKSPVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLI 724 (983)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l 724 (983)
+|+++. ..+++++++++++++++ ||++||+|+|. .++++|++++++||+++|+++.|++|+|++|+.++|+++++.|
T Consensus 140 ~~~t~~-~~~~~~~~~~a~~~~~~~G~~~~K~Kvg~-~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l 217 (383)
T 3i4k_A 140 VTWALG-VLPLDVAVAEIEERIEEFGNRSFKLKMGA-GDPAEDTRRVAELAREVGDRVSLRIDINARWDRRTALHYLPIL 217 (383)
T ss_dssp BCEEEC-SCCHHHHHHHHHHHHHHHCCSEEEEECCS-SCHHHHHHHHHHHHHTTTTTSEEEEECTTCSCHHHHHHHHHHH
T ss_pred EeEEee-CCCHHHHHHHHHHHHHhcCCcEEEEeeCC-CCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 998874 56899999999999987 99999999997 3799999999999999999999999999999999999999999
Q ss_pred ccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHH
Q 041113 725 KDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWA 801 (983)
Q Consensus 725 ~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A 801 (983)
+++++.|||||++ +++++++|++++++||++||++.+..+ +..+++. .+|++++|++++||++++++++++|
T Consensus 218 ~~~~i~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A 292 (383)
T 3i4k_A 218 AEAGVELFEQPTPADDLETLREITRRTNVSVMADESVWTPAE-----ALAVVKAQAADVIALKTTKHGGLLESKKIAAIA 292 (383)
T ss_dssp HHTTCCEEESCSCTTCHHHHHHHHHHHCCEEEESTTCSSHHH-----HHHHHHHTCCSEEEECTTTTTSHHHHHHHHHHH
T ss_pred HhcCCCEEECCCChhhHHHHHHHHhhCCCCEEecCccCCHHH-----HHHHHHcCCCCEEEEcccccCCHHHHHHHHHHH
Confidence 9999999999998 688899999999999999999998753 5566654 5799999999999999999999999
Q ss_pred HHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCC
Q 041113 802 QRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRG 877 (983)
Q Consensus 802 ~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~p 877 (983)
+++|++++++|++|++|++++++|+++++||+. .++.+++..++.+|++.+|+.+++ +|++|
T Consensus 293 ~~~gi~~~~~~~~es~i~~aa~~hlaaa~p~~~--------------~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~P 358 (383)
T 3i4k_A 293 EAGGLACHGATSLEGPIGTAASLQFAASTKAIS--------------YGTELFGPQLLKDTYIVQEFEYKDGQVAIPQGP 358 (383)
T ss_dssp HHTTCEEEECCSCCCHHHHHHHHHHHHHCTTEE--------------EEECCCHHHHBSSCSSSSCCCEETTEEECCCSS
T ss_pred HHcCCeEEeCCCCccHHHHHHHHHHHHcCCCCC--------------ccccccchhhhhhhccCCCceeeCCEEECCCCC
Confidence 999999999999999999999999999998641 112344566788899999999884 99999
Q ss_pred eeeEEecchhhhhhhccccc
Q 041113 878 FVEASVAKATHILQNLQINN 897 (983)
Q Consensus 878 GlGv~~d~a~~~~~~~~~~~ 897 (983)
||||++| ++.++++++..
T Consensus 359 GlGv~~d--~~~l~~~~~~~ 376 (383)
T 3i4k_A 359 GLGVDVD--MDKVNFYTRKE 376 (383)
T ss_dssp BTSCCCC--HHHHHHHBC--
T ss_pred CcceeeC--HHHHHHhhhcc
Confidence 9999999 88888887654
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-63 Score=558.83 Aligned_cols=361 Identities=17% Similarity=0.192 Sum_probs=308.8
Q ss_pred cccee--EeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC---cCcccHHHHHHHHHH-
Q 041113 490 LSICK--ICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQLRF- 563 (983)
Q Consensus 490 ~~~mk--I~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~---~~~~~~~~~~~~l~~- 563 (983)
|++|| |++|+++.+++||+.||.++.+++ ..++.++|||+|++|++||||+.+.+ |..++...+...++.
T Consensus 1 m~~m~~~I~~i~~~~~~~Pl~~p~~~s~~~~----~~~~~~~V~v~td~G~~G~GE~~~~~~~~y~~e~~~~~~~~i~~~ 76 (382)
T 3dgb_A 1 MSLHASAIESIETIIVDLPTIRPHKLAMHTM----QNQTLVLIRLRCADGIEGLGESTTIGGLAYGNESPDSIKTNIDRF 76 (382)
T ss_dssp ---CTTBEEEEEEEEEEEEEEEEEECSSCEE----EEEEEEEEEEEETTSCEEEEEEECSTTTTSSSCCHHHHHHHHHHT
T ss_pred CChhhCeeeEEEEEEEeeccCCCeEecCeEE----eeeeEEEEEEEECCCCEEEEecccCCCCccCCCCHHHHHHHHHHH
Confidence 55566 999999999999999999998764 45899999999999999999998763 445777777777764
Q ss_pred HHhHhccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccce
Q 041113 564 LLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTS 643 (983)
Q Consensus 564 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~ 643 (983)
+.|.++|+++.+++.++.. +++.+ ..+++|++|||+|||||+||.+|+|||+||||.. +++
T Consensus 77 l~p~liG~d~~~~~~~~~~-----l~~~~-----~g~~~A~said~ALwDl~gk~~g~Pv~~LLGg~~---------r~~ 137 (382)
T 3dgb_A 77 VAPLLIGQDASNINAAMLR-----LEQSI-----RGNTFAKSGIESALLDAQGKRLGLPVSELLGGRV---------RDA 137 (382)
T ss_dssp HHHHHTTSBTTCHHHHHHH-----HHHHC-----CSCHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCS---------CSE
T ss_pred HHHHhcCCCccCHHHHHHH-----HHHHh-----cCchHHHHHHHHHHHHHHHHHcCCCHHHHhCCCC---------CCe
Confidence 8999999999887665532 22221 1247899999999999999999999999999986 578
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhh-cCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHh
Q 041113 644 IKICALIDSNKSPVEVASIATTLVE-EGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~ 722 (983)
||+|+++. ..+++++.++++++++ .||++||+|+|. .++++|+++|++||+++|+++.|++|+|++|++++|+++++
T Consensus 138 v~~~~t~~-~~~~~~~~~~~~~~~~~~G~~~~KiKvg~-~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~ 215 (382)
T 3dgb_A 138 LPVAWTLA-SGDTAKDIAEAQKMLDLRRHRIFKLKIGA-GEVDRDLAHVIAIKKALGDSASVRVDVNQAWDEAVALRACR 215 (382)
T ss_dssp EEBCEEEC-SSCHHHHHHHHHHHHHTTSCSEEEEECCS-SCHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHH
T ss_pred eeEEEEec-CCChHHHHHHHHHHHHhCCCCEEEEeeCC-CCHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHH
Confidence 99998874 4578888888888887 699999999997 36899999999999999999999999999999999999999
Q ss_pred hcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHH
Q 041113 723 LIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIAR 799 (983)
Q Consensus 723 ~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~ 799 (983)
.|+++++.|||||++ +++++++|++++++||++||++++..+ +..+++ .++|++|+|++++||+++++++++
T Consensus 216 ~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~-----~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~ 290 (382)
T 3dgb_A 216 ILGGNGIDLIEQPISRNNRAGMVRLNASSPAPIMADESIECVED-----AFNLAREGAASVFALKIAKNGGPRATLRTAA 290 (382)
T ss_dssp HHHTTTCCCEECCBCTTCHHHHHHHHHHCSSCEEESTTCSSHHH-----HHHHHHHTCCSEEEECHHHHTSHHHHHHHHH
T ss_pred HHhhcCcCeeeCCCCccCHHHHHHHHHhCCCCEEeCCCcCCHHH-----HHHHHHcCCCCEEEecccccCCHHHHHHHHH
Confidence 999999999999998 789999999999999999999999753 555555 457999999999999999999999
Q ss_pred HHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCC
Q 041113 800 WAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSC 875 (983)
Q Consensus 800 ~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~ 875 (983)
+|+++|++++++|++|++|++++++||+++++|.. ..+.+....++.+|++.+|+.+++ +|+
T Consensus 291 ~A~~~gi~~~~~~~~es~ig~aa~~hlaaa~~~~~--------------~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~ 356 (382)
T 3dgb_A 291 IAEAAGIGLYGGTMLEGGIGTLASAHAFLTLNKLS--------------WDTELFGPLLLTEDILAEPPVYRDFHLHVSK 356 (382)
T ss_dssp HHHHHTCEEEECCSCCCHHHHHHHHHHHTTSSCCT--------------TCBCCCHHHHBSCCSBSSCCEEETTEEECCC
T ss_pred HHHHcCCeEeecCCCccHHHHHHHHHHHHcCCCCc--------------ceeeccchhhhhhcccCCCceeECCEEECCC
Confidence 99999999999999999999999999999998641 112234456778899889999884 999
Q ss_pred CCeeeEEecchhhhhhhcccc
Q 041113 876 RGFVEASVAKATHILQNLQIN 896 (983)
Q Consensus 876 ~pGlGv~~d~a~~~~~~~~~~ 896 (983)
+|||||++| ++.++++.+.
T Consensus 357 ~PGlGv~~d--~~~l~~~~~~ 375 (382)
T 3dgb_A 357 APGLGLSLD--EERLAFFRRE 375 (382)
T ss_dssp CSBTSCCBC--HHHHHHHBC-
T ss_pred CCCcCcccC--HHHHHHhhhc
Confidence 999999999 8888887754
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-62 Score=550.76 Aligned_cols=348 Identities=22% Similarity=0.288 Sum_probs=305.5
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHHH-HHhHhcc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLRF-LLHFMTG 570 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~~-~~~~l~g 570 (983)
|||++|+++.+++||+.||.++.++. ..++.++|+|+|++|++||||+.+.+ +++++...+...++. +.|.++|
T Consensus 3 MkI~~i~~~~~~~Pl~~p~~~a~~~~----~~~~~~~V~v~td~G~~G~Ge~~~~~~~~get~~~~~~~i~~~l~p~l~G 78 (379)
T 3r0u_A 3 SKIIDIKTSIIKIPLKRTFITAVRST----NHIDSLAVELTLDNGVKGYGVAPATTAITGDTLQGMQYIIREIFAPVILG 78 (379)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEE----EEEEEEEEEEEETTSCEEEEEEECCHHHHCCCHHHHHHHHHHTTHHHHTT
T ss_pred CEEEEEEEEEEEeecCCceEccCceE----EEeEEEEEEEEECCCCEEEEEEECCCCccCCCHHHHHHHHHHHhHHHhcC
Confidence 89999999999999999999998764 45899999999999999999998864 456776666677765 8899999
Q ss_pred CcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEee
Q 041113 571 AKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALI 650 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~ 650 (983)
+++.+++.++..+ ++.. ...++|++|||+|||||+||.+|+|||+||||.+ ++|++|+++
T Consensus 79 ~d~~~~~~~~~~~-----~~~~-----~~~~~A~said~ALwDl~gK~~g~Pv~~LLGg~r----------~~v~~y~t~ 138 (379)
T 3r0u_A 79 SDLSDYKQTLELA-----FKKV-----MFNSAAKMAIDLAYHDLLAKEQDISVAKLLGAKA----------NSIVTDVSI 138 (379)
T ss_dssp CBGGGHHHHHHHH-----HTTC-----SSCHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCC----------CEEEBCEEE
T ss_pred CCcccHHHHHHHH-----HHhc-----ccchHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC----------CeEEEEEEe
Confidence 9998766555321 1111 2357899999999999999999999999999964 689999987
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhccc--CC
Q 041113 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD--CD 728 (983)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~--~~ 728 (983)
+..+++++++++++++++||++||+|+|. ++++|+++|++||+++|+++.|++|+|++|++++|+++++.|++ ++
T Consensus 139 -g~~~~e~~~~~a~~~~~~Gf~~~KlK~g~--~~~~d~~~v~avR~a~g~~~~L~vDaN~~w~~~~A~~~~~~l~~~~~~ 215 (379)
T 3r0u_A 139 -SCGNVAETIQNIQNGVEANFTAIKVKTGA--DFNRDIQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSLN 215 (379)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCCEEEEECSS--CHHHHHHHHHHHHHHCCTTSEEEEECTTCCCHHHHHHHHHHHHTSCCC
T ss_pred -cCCCHHHHHHHHHHHHHcCCCEEeeecCC--CHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCC
Confidence 45789999999999999999999999997 79999999999999999999999999999999999999999999 89
Q ss_pred CceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcC
Q 041113 729 LQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHG 805 (983)
Q Consensus 729 i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~g 805 (983)
+.|||||++ +++++++|++++++||++||++++..+ +..+++.+ +|++|+|++++||++++++++++|+++|
T Consensus 216 l~~iEeP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~i~~~a~d~v~~k~~~~GGi~~~~~ia~~A~~~g 290 (379)
T 3r0u_A 216 VEIIEQPVKYYDIKAMAEITKFSNIPVVADESVFDAKD-----AERVIDEQACNMINIKLAKTGGILEAQKIKKLADSAG 290 (379)
T ss_dssp EEEEECCSCTTCHHHHHHHHHHCSSCEEESTTCSSHHH-----HHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTT
T ss_pred cEEEECCCCcccHHHHHHHHhcCCCCEEeCCccCCHHH-----HHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcC
Confidence 999999998 788999999999999999999999753 56666544 7999999999999999999999999999
Q ss_pred CcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCC-CCeee
Q 041113 806 KMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSC-RGFVE 880 (983)
Q Consensus 806 i~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~-~pGlG 880 (983)
+++++||++|++|++++++|++++ ||+. .+++++..++.+|++.+++.+++ +|+ +||||
T Consensus 291 i~~~~~~~~es~i~~aa~~hlaaa-p~~~---------------~~eld~~~~~~~d~~~~~~~~~~G~i~~p~~~PGLG 354 (379)
T 3r0u_A 291 ISCMVGCMMESPAGILATASFALA-EDIT---------------VADLDPLDWVAKDLYSDYITFNEPNIILKDNLKGFG 354 (379)
T ss_dssp CEEEECCCSCCHHHHHHHHHHHHH-TTCC---------------CBCCGGGGGSCGGGTTTTEEEETTEEEECTTCSBTS
T ss_pred CEEEEeCCCccHHHHHHHHHHHhC-CCCC---------------eeecCchhhhhhccccCCceEECCEEEcCCCCCccc
Confidence 999999999999999999999999 8641 13466777888999999999874 999 89999
Q ss_pred EEecchhhhh
Q 041113 881 ASVAKATHIL 890 (983)
Q Consensus 881 v~~d~a~~~~ 890 (983)
|++| ++.+
T Consensus 355 veld--~~~~ 362 (379)
T 3r0u_A 355 FNLA--ENLY 362 (379)
T ss_dssp CCCH--HHHT
T ss_pred eeEC--HHHH
Confidence 9999 5553
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-62 Score=551.40 Aligned_cols=358 Identities=17% Similarity=0.183 Sum_probs=297.7
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC---cCcccHHHHHHHHHH-HHhHh
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQLRF-LLHFM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~---~~~~~~~~~~~~l~~-~~~~l 568 (983)
|||++|+++.+++||+.||.++.+++ ..++.++|||+|++|++||||+.+.+ |..++.+.+...++. +.|.+
T Consensus 5 mkI~~i~~~~~~~pl~~p~~~s~~~~----~~~~~~~V~i~td~G~~G~GE~~~~~~~~y~~e~~~~~~~~i~~~l~p~l 80 (381)
T 3fcp_A 5 ATVEQIESWIVDVPTIRPHKLSMTTM----GCQSLVIVRLTRSDGICGIGEATTIGGLSYGVESPEAISSAITHYLTPLL 80 (381)
T ss_dssp CBEEEEEEEEEEECBC---------------CEEEEEEEEEETTSCEEEEEEECSTTTTSSSCCHHHHHHHHHHTHHHHH
T ss_pred cEEEEEEEEEEeccccCCeEecccEE----EeeeEEEEEEEECCCCEEEeccccCCCCccCCCCHHHHHHHHHHHHHHHh
Confidence 89999999999999999999998765 34899999999999999999998763 345677777677764 89999
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA 648 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~ 648 (983)
+|+++.+++.++.. +++.+ ...++|++|||+|||||+||.+|+|||+||||.. +++||+|+
T Consensus 81 ~G~d~~~~~~~~~~-----l~~~~-----~g~~~A~said~ALwDl~gk~~g~Pv~~LLGg~~---------r~~v~~~~ 141 (381)
T 3fcp_A 81 KGQPADNLNALTAR-----MNGAI-----KGNTFAKSAIETALLDAQGKALGLPVSALLGGAL---------QTALPVLW 141 (381)
T ss_dssp TTSBSSCHHHHHHH-----HHHHC-----CSCHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCS---------CSEEEBCE
T ss_pred cCCCcCCHHHHHHH-----HHHHh-----cCcHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC---------CCceeeEE
Confidence 99999887665532 22221 1247899999999999999999999999999986 57899998
Q ss_pred eecCCCCHHHHHHHHHHhhh-cCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccC
Q 041113 649 LIDSNKSPVEVASIATTLVE-EGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727 (983)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~-~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~ 727 (983)
++. ..+++++.++++++++ .||++||+|+|. .++++|+++|++||+++|+++.||+|+|++|++++|+++++.|+++
T Consensus 142 t~~-~~~~~~~~~~~~~~~~~~G~~~~KiKvg~-~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~ 219 (381)
T 3fcp_A 142 TLA-SGDTAKDIAEGEKLLAEGRHRAFKLKIGA-RELATDLRHTRAIVEALGDRASIRVDVNQAWDAATGAKGCRELAAM 219 (381)
T ss_dssp EEC-SSCHHHHHHHHHHHTC----CEEEEECCS-SCHHHHHHHHHHHHHHTCTTCEEEEECTTCBCHHHHHHHHHHHHHT
T ss_pred Eec-CCChHHHHHHHHHHHHhCCCCEEEEecCC-CChHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 874 4578888888888887 699999999997 3689999999999999999999999999999999999999999999
Q ss_pred CCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHc
Q 041113 728 DLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRH 804 (983)
Q Consensus 728 ~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~ 804 (983)
++.|||||++ |++++++|++++++||++||++++..+ +..+++. ++|++|+|++++||++++++++++|+++
T Consensus 220 ~i~~iEeP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~-----~~~~~~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~ 294 (381)
T 3fcp_A 220 GVDLIEQPVSAHDNAALVRLSQQIETAILADEAVATAYD-----GYQLAQQGFTGAYALKIAKAGGPNSVLALARVAQAA 294 (381)
T ss_dssp TCSEEECCBCTTCHHHHHHHHHHSSSEEEESTTCCSHHH-----HHHHHHTTCCSEEEECHHHHTSTTHHHHHHHHHHHH
T ss_pred CccceeCCCCcccHHHHHHHHHhCCCCEEECCCcCCHHH-----HHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHc
Confidence 9999999998 789999999999999999999999753 5666654 5799999999999999999999999999
Q ss_pred CCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeee
Q 041113 805 GKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVE 880 (983)
Q Consensus 805 gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlG 880 (983)
|++++++|++|++|++++++|++++++ +. ..+.+.+..++.+|++.+|+.+++ +|++||||
T Consensus 295 gi~~~~~~~~es~i~~aa~~hlaaa~~-~~--------------~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlG 359 (381)
T 3fcp_A 295 GIGLYGGTMLEGTVGTVASLHAWSTLP-LQ--------------WGTEMFGPLLLKDDIVSVPLTFADGQVALPQTPGLG 359 (381)
T ss_dssp TCEEEECCSCCCHHHHHHHHHHHTTSC-CT--------------TCBCCCGGGGBSCCSBSSCCCEETTEEECCCSSBTS
T ss_pred CCceecCCCCccHHHHHHHHHHHHhCC-Cc--------------cccccccchhhhhhccCCCceeeCCEEECCCCCCcC
Confidence 999999999999999999999999987 31 112233456678899888998884 99999999
Q ss_pred EEecchhhhhhhccccc
Q 041113 881 ASVAKATHILQNLQINN 897 (983)
Q Consensus 881 v~~d~a~~~~~~~~~~~ 897 (983)
|++| ++.++++.++.
T Consensus 360 v~~d--~~~l~~~~~~~ 374 (381)
T 3fcp_A 360 VELD--EDKLHFYTRQE 374 (381)
T ss_dssp CCBC--HHHHHHHBCC-
T ss_pred cccC--HHHHHHhhhhc
Confidence 9999 88888888764
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-62 Score=553.32 Aligned_cols=354 Identities=17% Similarity=0.159 Sum_probs=305.7
Q ss_pred eeEeEEEEEEEEeeCCCC-Cccccc-cccCcceeeeEEEEEEEECCCCEEEEeecCc-C-cCcccHHHHHHHHHHHHhHh
Q 041113 493 CKICRMEYSLYRIQLCAP-PTSSYI-DHNRSRFCREGFILSLYLEDGSVGYGEVAPL-E-IHKENLLDAEEQLRFLLHFM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p-~~~~~~-~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~-~-~~~~~~~~~~~~l~~~~~~l 568 (983)
|||++|+++.+++|++.| |.++.+ .. ..++.++|+|+|++|++||||+.+. + ++.++...+...++.+.|.|
T Consensus 3 MkI~~i~~~~~~~pl~~p~~~~s~g~~~----~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~e~~~~~~~~l~~l~~~l 78 (386)
T 3fv9_G 3 LKITRIDIHRTDLPVRGGVYRLSGGREY----HSYDATIVSIETDTGLTGWGESTPFGSTYIAAHAGGTRAALELLAPAI 78 (386)
T ss_dssp CCEEEEEEEEEEEEBSSSCEEETTTEEE----SEEEEEEEEEEETTSCEEEEEECCSTTSSSSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEEEeecCCCceEecCceEE----eeeeEEEEEEEECCCCEEEEecccCCCccCcccHHHHHHHHHHHHHHh
Confidence 899999999999999998 888744 32 3488999999999999999999876 2 44566677777788899999
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA 648 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~ 648 (983)
+|+++.+++.++..+ +..+ ...++|++|||+|||||+||.+|+|||+||||.. +++|++|+
T Consensus 79 ~G~d~~~~~~~~~~l-----~~~~-----~g~~~A~said~ALwDl~gk~~g~Pv~~LLGg~~---------~~~v~~y~ 139 (386)
T 3fv9_G 79 LGMDPRQHDRIWDRM-----RDTL-----KGHRDARAALDIACWDIAAQAAGLPLCDMTGGRV---------AGPVPVIS 139 (386)
T ss_dssp TTSCTTCHHHHHHHH-----HHHC-----SSCHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCC---------SSCBCEEE
T ss_pred CCCCcCCHHHHHHHH-----HHHh-----cCcHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCC---------CCceeeeE
Confidence 999998766655321 1111 1247899999999999999999999999999976 57899999
Q ss_pred eecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC---CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhc-
Q 041113 649 LIDSNKSPVEVASIATTLVEEGFTAIKLKVARR---ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLI- 724 (983)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~---~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l- 724 (983)
++. ..+++++++++++++++||++||+|+|.. .++++|+++|++||+++|+++.|++|+|++|++++|+++++.|
T Consensus 140 s~~-~~~~e~~~~~a~~~~~~G~~~~K~Kvg~~~~~~~~~~d~~~v~avR~a~G~~~~L~vDaN~~~~~~~A~~~~~~l~ 218 (386)
T 3fv9_G 140 SIG-GDTPEAMRAKVARHRAQGFKGHSIKIGASEAEGGPALDAERITACLADRQPGEWYLADANNGLTVEHALRMLSLLP 218 (386)
T ss_dssp EEC-SCCHHHHHHHHHHHHHTTCCEEEEECCCCTTTTHHHHHHHHHHHHTTTCCTTCEEEEECTTCCCHHHHHHHHHHSC
T ss_pred ecC-CCCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 884 67899999999999999999999999931 2689999999999999999999999999999999999999999
Q ss_pred ccCCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHH
Q 041113 725 KDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQR 803 (983)
Q Consensus 725 ~~~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~ 803 (983)
+++++ |||||+++++++++|++++++||++||++++..+ +..+++. .+|++|+|++++||++++++++++|++
T Consensus 219 ~~~~i-~iEeP~~~~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~~~~~a~d~v~~k~~~~GGit~~~~i~~~A~~ 292 (386)
T 3fv9_G 219 PGLDI-VLEAPCASWAETKSLRARCALPLLLDELIQTETD-----LIAAIRDDLCDGVGLKVSKQGGITPMLRQRAIAAA 292 (386)
T ss_dssp SSCCC-EEECCCSSHHHHHHHHTTCCSCEEESTTCCSHHH-----HHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHH
T ss_pred ccCCc-EEecCCCCHHHHHHHHhhCCCCEEeCCCcCCHHH-----HHHHHHhCCCCEEEECccccCCHHHHHHHHHHHHH
Confidence 89999 9999999999999999999999999999999753 6666654 579999999999999999999999999
Q ss_pred cCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCee
Q 041113 804 HGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFV 879 (983)
Q Consensus 804 ~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGl 879 (983)
+|++++++|++||+|++++++||+++++|. ...+.+++..|+.+|++.+|+.+++ +|++|||
T Consensus 293 ~gi~~~~~~~~es~i~~aa~~hlaaa~~~~--------------~~~~~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGl 358 (386)
T 3fv9_G 293 AGMVMSVQDTVGSQISFAAILHLAQSTPRH--------------LLRCALDTRAMTTAELAEIDAPLRDGGASAPSDPGL 358 (386)
T ss_dssp TTCEEEEECSSCCHHHHHHHHHHHHTSCTT--------------TEEEEECGGGTBCCCCEECCCCSBTTBBCCCCSSBT
T ss_pred cCCEEEeCCCCCCHHHHHHHHHHHHhCCCc--------------ccccccccccchhccccCCCceEECCEEECCCCCCC
Confidence 999999999999999999999999999863 1112345667888888888888874 9999999
Q ss_pred eEEecchhhhhhh
Q 041113 880 EASVAKATHILQN 892 (983)
Q Consensus 880 Gv~~d~a~~~~~~ 892 (983)
||++| ++.+++
T Consensus 359 Gv~~d--~~~l~~ 369 (386)
T 3fv9_G 359 GLRVN--RDALGT 369 (386)
T ss_dssp CCEEC--GGGGCS
T ss_pred CceeC--HHHHhc
Confidence 99999 666533
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-62 Score=550.79 Aligned_cols=352 Identities=16% Similarity=0.173 Sum_probs=290.8
Q ss_pred eeEeEEEEEEEEeeC-CCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCc-C-cCcccHHHHHHHHHHHHhHhc
Q 041113 493 CKICRMEYSLYRIQL-CAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL-E-IHKENLLDAEEQLRFLLHFMT 569 (983)
Q Consensus 493 mkI~~v~~~~~~~pl-~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~-~-~~~~~~~~~~~~l~~~~~~l~ 569 (983)
|||++|+++.+++|| +.||.++.+.+ ..++.++|+|+|++|++||||+.+. + +..++...+...++.+.|.|+
T Consensus 23 MkI~~i~~~~~~~pl~~~p~~~s~g~~----~~~~~~~V~i~td~G~~G~GE~~~~~~~~~~~~~~~~~~~l~~l~p~l~ 98 (391)
T 4e8g_A 23 MKIAEIHVYAHDLPVKDGPYTIASSTV----WSLQTTLVKIVADSGLAGWGETCPVGPTYAPSHALGARAALAEMAPGLI 98 (391)
T ss_dssp CCEEEEEEEEEEC-------------------CCEEEEEEEEETTSCEEEEEECCSSTTTSSCCHHHHHHHHHHHGGGGT
T ss_pred CEEEEEEEEEEeeeCCCCCccccccee----eeeeEEEEEEEECCCCEEEecCcCCCCccCCccHHHHHHHHHHHHHHHC
Confidence 799999999999999 99999998754 3489999999999999999999876 3 334455666777888999999
Q ss_pred cCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEe
Q 041113 570 GAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICAL 649 (983)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~ 649 (983)
|+++.+++.++..+ ...+ ..+++|++|||||||||+||.+|+|||+||||.. +++|++|++
T Consensus 99 G~d~~~~~~~~~~l-----~~~~-----~g~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~---------r~~v~~y~s 159 (391)
T 4e8g_A 99 GANPLQPLVLRRRM-----DGLL-----CGHNYAKAAIDIAAYDLMGKHYGVRVADLLGGVA---------AERVPSYYA 159 (391)
T ss_dssp TCCTTCHHHHHHHH-----HTTC-----SSCHHHHHHHHHHHHHHHHHHHTCBGGGGTTCCS---------CSEEECCEE
T ss_pred CCCcCCHHHHHHHH-----HHHh-----cCcHHHHHHHHHHHHHHHHHHcCChHHHhcCCCC---------CCcEEEeEE
Confidence 99988765554321 1111 1257899999999999999999999999999986 578999998
Q ss_pred ecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcC-CCcEEEEEcCCCCCHHHHHHHHhhcccCC
Q 041113 650 IDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVG-HRIELRVDANRNWTYQEALEFGFLIKDCD 728 (983)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g-~~~~l~vDaN~~~~~~~a~~~~~~l~~~~ 728 (983)
+. ..+++++++++++++++||++||+|+|. .++++|+++|++||+++| +++.|++|+|++|++++|+++++.|++++
T Consensus 160 ~~-~~~~e~~~~~a~~~~~~G~~~~KlKvg~-~~~~~d~~~v~avR~a~gg~~~~L~vDaN~~w~~~~A~~~~~~L~~~~ 237 (391)
T 4e8g_A 160 TG-IGQPDEIARIAAEKVAEGFPRLQIKIGG-RPVEIDIETVRKVWERIRGTGTRLAVDGNRSLPSRDALRLSRECPEIP 237 (391)
T ss_dssp EC-SCCHHHHHHHHHHHHHTTCSEEEEECCS-SCHHHHHHHHHHHHHHHTTTTCEEEEECTTCCCHHHHHHHHHHCTTSC
T ss_pred cC-CCCHHHHHHHHHHHHHcCCcEEEEcCCC-CCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCCHHHHHHHHHHHhhcC
Confidence 84 5789999999999999999999999997 378999999999999998 99999999999999999999999999999
Q ss_pred CceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCc
Q 041113 729 LQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKM 807 (983)
Q Consensus 729 i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~ 807 (983)
+ |||||+++++++++|++++++||++||++++..+ +..+++. .+|++|+|++++||++++++++++|+++|++
T Consensus 238 i-~iEeP~~~~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~~~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~ 311 (391)
T 4e8g_A 238 F-VLEQPCNTLEEIAAIRGRVQHGIYLDESGEDLST-----VIRAAGQGLCDGFGMKLTRIGGLQQMAAFRDICEARALP 311 (391)
T ss_dssp E-EEESCSSSHHHHHHHGGGCCSCEEESTTCCSHHH-----HHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCC
T ss_pred e-EEecCCccHHHHHHHHhhCCCCEEeCCCCCCHHH-----HHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCe
Confidence 9 9999988999999999999999999999999753 6666654 4799999999999999999999999999999
Q ss_pred EEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCC-ceeec----cCCCCeeeEE
Q 041113 808 AVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDP-ISICH----NSCRGFVEAS 882 (983)
Q Consensus 808 ~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p-~~~~~----~P~~pGlGv~ 882 (983)
+++||++||+|++++++||++++||.. + . ...+...|+..|+...+ +.+++ +|++|||||+
T Consensus 312 ~~~~~~~es~i~~aa~~hlaaa~p~~~--~---~---------~~~~~~~~~~~~~~~~~g~~~~~G~i~vp~~PGLGve 377 (391)
T 4e8g_A 312 HSCDDAWGGDIIAAACTHIGATVQPRL--N---E---------GVWVAQPYIAQPYDEENGIRIAGGHIDLPKGPGLGIT 377 (391)
T ss_dssp EEEECSSCSHHHHHHHHHHHTTSCGGG--E---E---------ECCCSGGGCSSCSCTTTCCCEETTEEECCCSSBTSCC
T ss_pred EEeCCcCCCHHHHHHHHHHHHhCCCcc--c---c---------ccccchhhhhhhccccCCceEECCEEECCCCCcCCCc
Confidence 999999999999999999999999641 1 0 11233456777776555 66773 9999999999
Q ss_pred ecchhhhhh
Q 041113 883 VAKATHILQ 891 (983)
Q Consensus 883 ~d~a~~~~~ 891 (983)
+| ++.++
T Consensus 378 ~d--~~~l~ 384 (391)
T 4e8g_A 378 PD--ESLFG 384 (391)
T ss_dssp CC--GGGTC
T ss_pred cC--HHHHh
Confidence 99 55543
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-62 Score=547.20 Aligned_cols=354 Identities=22% Similarity=0.222 Sum_probs=307.0
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHHHHHhHhccC
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLRFLLHFMTGA 571 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~~~~~~l~g~ 571 (983)
|||++|+++.+++||+.||.++.+.+ ..++.++|+|+|++|++||||+.+.+ +++++...+...++.+.|.++|+
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~g~~----~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~l~~~l~G~ 76 (368)
T 3q45_A 1 MIITQVELYKSPVKLKEPFKISLGIL----THANNVIVRIHTASGHIGYGECSPFMTIHGESMDTAFIVGQYLAKGLIGT 76 (368)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEEETTCCEEEEEECCCHHHHSCCHHHHHHHHHHHHHHHTTS
T ss_pred CEEEEEEEEEEEeecCCCEEccCceE----eeeeEEEEEEEECCCCEEEeeccCCCCcCCCCHHHHHHHHHHHHHHhcCC
Confidence 79999999999999999999988764 45899999999999999999998875 35677777777788899999999
Q ss_pred cccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCcccccccccccee-EEEEee
Q 041113 572 KISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSI-KICALI 650 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i-~~~~~~ 650 (983)
++.++..++.. +++.+. ..++|++|||||||||+||.+|+|||+||||.+ .+| ++|+++
T Consensus 77 d~~~~~~~~~~-----l~~~~~-----~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~----------~~v~~~~~~~ 136 (368)
T 3q45_A 77 SCLDIVSNSLL-----MDAIIY-----GNSCIKSAFNIALYDLAAQHAGLPLYAFLGGKK----------DKIIQTDYTV 136 (368)
T ss_dssp BTTCHHHHHHH-----HHHHCS-----CCHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCC----------CSCEEBCEEE
T ss_pred ChhhHHHHHHH-----HHHHhc-----CCHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC----------CeeeeeEEEe
Confidence 99887665532 222211 247899999999999999999999999999986 357 777776
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCc
Q 041113 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQ 730 (983)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~ 730 (983)
+..+++++++++++++++||++||+|+|. ++++|++++++||+++|+++.|++|+|++|+.++|+++++.|+++++.
T Consensus 137 -~~~~~e~~~~~a~~~~~~G~~~~K~KvG~--~~~~d~~~v~avR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~ 213 (368)
T 3q45_A 137 -SIDEPHKMAADAVQIKKNGFEIIKVKVGG--SKELDVERIRMIREAAGDSITLRIDANQGWSVETAIETLTLLEPYNIQ 213 (368)
T ss_dssp -CSCCHHHHHHHHHHHHHTTCSEEEEECCS--CHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHHGGGCCS
T ss_pred -cCCCHHHHHHHHHHHHHcCCCeEEEEecC--CHHHHHHHHHHHHHHhCCCCeEEEECCCCCChHHHHHHHHHHhhcCCC
Confidence 35789999999999999999999999997 789999999999999999999999999999999999999999999999
Q ss_pred eeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHcCCc
Q 041113 731 YIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRHGKM 807 (983)
Q Consensus 731 ~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~ 807 (983)
|||||++ +++++++|++++++||++||++++..+ +..+++ ..+|++|+|++++||++++++++++|+++|++
T Consensus 214 ~iEqP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~ 288 (368)
T 3q45_A 214 HCEEPVSRNLYTALPKIRQACRIPIMADESCCNSFD-----AERLIQIQACDSFNLKLSKSAGITNALNIIRLAEQAHMP 288 (368)
T ss_dssp CEECCBCGGGGGGHHHHHHTCSSCEEESTTCCSHHH-----HHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCC
T ss_pred EEECCCChhHHHHHHHHHhhCCCCEEEcCCcCCHHH-----HHHHHHcCCCCeEEechhhcCCHHHHHHHHHHHHHcCCc
Confidence 9999998 678899999999999999999998753 555555 45799999999999999999999999999999
Q ss_pred EEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceee-----ccCCCCeeeEE
Q 041113 808 AVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISIC-----HNSCRGFVEAS 882 (983)
Q Consensus 808 ~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~-----~~P~~pGlGv~ 882 (983)
+++||++||+|++++++|+++++||+. .+++++..++.+|++.+++.++ .+|++|||||+
T Consensus 289 ~~~~~~~es~i~~aa~~hlaaa~p~~~---------------~~el~~~~~~~~d~~~~~~~~~~gG~i~~p~~PGlGv~ 353 (368)
T 3q45_A 289 VQVGGFLESRLGFTAAAHVALVSKTIC---------------YYDFDTPLMFEADPVRGGIVYQQRGIIEVPETAGLGAG 353 (368)
T ss_dssp EEECCSSCCHHHHHHHHHHHTTCTTEE---------------EECCCGGGGBSSCCEEESCEECGGGEEECCCSSBSCEE
T ss_pred EEecCccccHHHHHHHHHHHHcCCCCc---------------eeccccHHhhhhccccCCceecCCeEEEcCCCCcccee
Confidence 999999999999999999999998641 1234556667788777777765 28999999999
Q ss_pred ecchhhhhhhccc
Q 041113 883 VAKATHILQNLQI 895 (983)
Q Consensus 883 ~d~a~~~~~~~~~ 895 (983)
+| ++.++++++
T Consensus 354 ~d--~~~l~~~~~ 364 (368)
T 3q45_A 354 YQ--KDYLSGLEK 364 (368)
T ss_dssp EC--TTTGGGSEE
T ss_pred eC--HHHHHhhhh
Confidence 99 777777653
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-61 Score=548.82 Aligned_cols=346 Identities=21% Similarity=0.230 Sum_probs=289.9
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHHHHHhHhcc
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLRFLLHFMTG 570 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~~~~~~l~g 570 (983)
.|||++|+++.+++||+.||.++.+.. ..++.++|+|+|++|++||||+.+.+ +++++...+...++.+.|.|+|
T Consensus 26 ~mkI~~i~~~~~~~Pl~~p~~~a~g~~----~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~l~p~l~G 101 (393)
T 3u9i_A 26 PTTIRALTVAPLDIPLHEPFGIASGAQ----EVARNLLVAVELTDGTRGYGEAAPFPAFNGETQDMAHAAILAARSLVEG 101 (393)
T ss_dssp TTBEEEEEEEEEEEEBCC--------------EEEEEEEEEEETTSCEEEEEECCCHHHHSCCHHHHHHHHHHTHHHHTT
T ss_pred CcEEEEEEEEEEEEecCCceEccCceE----EeeeEEEEEEEECCCCEEEEEeeCCCCcCcCCHHHHHHHHHHHHHHhcC
Confidence 489999999999999999999988764 34899999999999999999998875 3467777777778889999999
Q ss_pred CcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEee
Q 041113 571 AKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALI 650 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~ 650 (983)
+++.+++.++..+. ... ...++|++|||+|||||+||.+|+|||+||||.. ++|++|+++
T Consensus 102 ~d~~~~~~~~~~l~-----~~~-----~~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~----------~~v~~~~t~ 161 (393)
T 3u9i_A 102 ADVREWRRIALALP-----ALP-----GMTGSARCAIETAILDALTRRARLPLWAFFGGAA----------TSLETDVTI 161 (393)
T ss_dssp SBGGGHHHHHHHGG-----GST-----TCCHHHHHHHHHHHHHHHHHHTTCBHHHHTTCSC----------SEEECCEEE
T ss_pred CCcCCHHHHHHHHH-----Hhc-----CccHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC----------CceEEEEEe
Confidence 99987665553221 111 1357999999999999999999999999999975 568888887
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCC--------hHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHh
Q 041113 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRAD--------PIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722 (983)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~--------~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~ 722 (983)
...+++++++++++++++||++||+|+|.. + +++|+++|++||+++ +++.||||||++|++++|+++++
T Consensus 162 -~~~~~e~~~~~a~~~~~~Gf~~iKlKvg~~-~~~~~~~~~~~~di~~v~avR~a~-~d~~L~vDaN~~w~~~~A~~~~~ 238 (393)
T 3u9i_A 162 -TTGSVTAAARAAQAIVARGVTTIKIKIGAG-DPDATTIRTMEHDLARIVAIRDVA-PTARLILDGNCGYTAPDALRLLD 238 (393)
T ss_dssp -C---CHHHHHHHHHHHTTTCCEEEEECC--------CHHHHHHHHHHHHHHHHHS-TTSEEEEECCSCCCHHHHHHHHH
T ss_pred -cCCCHHHHHHHHHHHHHcCCCeEEEEeCCC-cccccccccHHHHHHHHHHHHHHC-CCCeEEEEccCCCCHHHHHHHHH
Confidence 356889999999999999999999999972 4 789999999999999 57999999999999999999999
Q ss_pred hc--ccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHH
Q 041113 723 LI--KDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLI 797 (983)
Q Consensus 723 ~l--~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~ 797 (983)
.| +++++.|||||++ |++++++|++++++|||+||++++..+ +..+++. .+|++|+|+++ ||+++++++
T Consensus 239 ~L~~~~~~i~~iEeP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~i~~~a~d~i~~k~~~-GGit~~~~i 312 (393)
T 3u9i_A 239 MLGVHGIVPALFEQPVAKDDEEGLRRLTATRRVPVAADESVASATD-----AARLARNAAVDVLNIKLMK-CGIVEALDI 312 (393)
T ss_dssp TTTTTTCCCSEEECCSCTTCTTHHHHHHHTCSSCEEESTTCCSHHH-----HHHHHHTTCCSEEEECHHH-HCHHHHHHH
T ss_pred HHhhCCCCeEEEECCCCCCcHHHHHHHHhhCCCcEEeCCcCCCHHH-----HHHHHHcCCCCEEEecccc-cCHHHHHHH
Confidence 99 9999999999998 889999999999999999999999753 5555544 57999999999 999999999
Q ss_pred HHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----c
Q 041113 798 ARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----N 873 (983)
Q Consensus 798 ~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~ 873 (983)
+++|+++|+++++||++||+|++++++||++++||+. + +++++..++.+|++.+++.+++ +
T Consensus 313 a~~A~~~gi~~~~~~~~es~ig~aa~~hlaaa~p~~~----------~-----~el~~~~~~~~d~~~~~~~~~~G~i~~ 377 (393)
T 3u9i_A 313 AAIARTAGLHLMIGGMVESLLAMTVSACFAAGQGGFR----------F-----VDLDTPLFLAENPFDGGMTYHGGTIDL 377 (393)
T ss_dssp HHHHHHHTCEEEECCSSCCHHHHHHHHHHHHHHCCEE----------E-----ECCCGGGSBSCCCEEESCEEETTEEEC
T ss_pred HHHHHHcCCeEEecCCcccHHHHHHHHHHHhcCCCCC----------e-----ecccchhhhhhcccCCCceeECCEEEC
Confidence 9999999999999999999999999999999998641 1 1345667788898888888884 9
Q ss_pred CC-CCeeeEEecc
Q 041113 874 SC-RGFVEASVAK 885 (983)
Q Consensus 874 P~-~pGlGv~~d~ 885 (983)
|+ +|||||++|+
T Consensus 378 p~~~PGlGve~d~ 390 (393)
T 3u9i_A 378 TLIEAGHGVTPRS 390 (393)
T ss_dssp TTCCSBTCEEEC-
T ss_pred CCCCCcCCcccCc
Confidence 99 9999999993
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-62 Score=552.16 Aligned_cols=359 Identities=20% Similarity=0.187 Sum_probs=300.3
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeee-EEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHH-HHhHhc
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCRE-GFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRF-LLHFMT 569 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~-~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~-~~~~l~ 569 (983)
+|||++|+++.+++||+.||.++.+++ ..++ .++|+|+|++|++||||+.+.+..+++...+...++. +.|.++
T Consensus 5 ~~kI~~i~~~~~~~Pl~~p~~~s~~~~----~~~~~~~~V~v~td~G~~G~GE~~~~~~~~e~~~~~~~~i~~~l~p~li 80 (377)
T 3my9_A 5 DSVVERIRIFLVESPIKMARLQGVGNV----KGSVKRVLLEVTSADGIVGWGEAAPWEVFTGTPEAAFSALDIYLRPLIL 80 (377)
T ss_dssp CCBEEEEEEEEEEECEEC--------------CCEEEEEEEEEETTSCEEEEEECCC-----CHHHHHHHHHTTTHHHHT
T ss_pred cCEEEEEEEEEEeccccCCeeccceEE----EeeeeEEEEEEEECCCCEEEEecccCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 489999999999999999999998765 3467 9999999999999999999876434666667777776 889999
Q ss_pred cCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEe
Q 041113 570 GAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICAL 649 (983)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~ 649 (983)
|+++.+++.++..+ ++.+ ..+++|++|||+|||||+||.+|+|||+||||.. +++|++|++
T Consensus 81 G~d~~~~~~~~~~l-----~~~~-----~~~~~A~said~AlwDl~gk~~g~Pl~~LLGg~~---------r~~v~~~~t 141 (377)
T 3my9_A 81 GAPIKRVRELMARM-----DKML-----VGHGEAKAAVEMALLDILGKATGLSVADLLGGRV---------RDRIPLSFS 141 (377)
T ss_dssp TCBTTCHHHHHHHH-----HHHS-----CSCHHHHHHHHHHHHHHHHHHHTCBTTGGGTCCS---------CSEEEBCEE
T ss_pred CCCcCCHHHHHHHH-----HHHh-----cCchhHHHHHHHHHHHHHHHHcCCcHHHHhCCCC---------CCeEEEEEe
Confidence 99998876655322 2211 1257899999999999999999999999999976 578999998
Q ss_pred ecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCC
Q 041113 650 IDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729 (983)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i 729 (983)
+. ..+++++.+++++++++||++||+|+|. .++++|++++++||+++|+++.|++|+|++|+.++|+++++.|+++++
T Consensus 142 ~~-~~~~~~~~~~a~~~~~~G~~~~K~Kvg~-~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i 219 (377)
T 3my9_A 142 IA-DPDFDADLERMRAMVPAGHTVFKMKTGV-KPHAEELRILETMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRP 219 (377)
T ss_dssp EC-CSSHHHHHHHHHHHTTTTCCEEEEECSS-SCHHHHHHHHHHHHHHHGGGSEEEEECTTCCCTTTHHHHHHHHHTTCC
T ss_pred cC-CCCHHHHHHHHHHHHHcCCCEEEEccCC-CcHHHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCC
Confidence 74 5689999999999999999999999997 368999999999999999999999999999999999999999999999
Q ss_pred ceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHcCC
Q 041113 730 QYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRHGK 806 (983)
Q Consensus 730 ~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi 806 (983)
.|||||++ +++++++|++++++||++||++++..+ +..+++ ..+|++|+|++++||++++++++++|+++|+
T Consensus 220 ~~iEqP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~-----~~~~i~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi 294 (377)
T 3my9_A 220 TFIEQPVPRRHLDAMAGFAAALDTPILADESCFDAVD-----LMEVVRRQAADAISVKIMKCGGLMKAQSLMAIADTAGL 294 (377)
T ss_dssp SCEECCSCTTCHHHHHHHHHHCSSCEEESTTCSSHHH-----HHHHHHHTCCSEEECCHHHHTSHHHHHHHHHHHHHHTC
T ss_pred CEEECCCCccCHHHHHHHHHhCCCCEEECCccCCHHH-----HHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCC
Confidence 99999998 788999999999999999999999753 555554 4579999999999999999999999999999
Q ss_pred cEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccch-hcccccCCCCCceeec----cCCCCeeeE
Q 041113 807 MAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTY-QWLKEDVTTDPISICH----NSCRGFVEA 881 (983)
Q Consensus 807 ~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~d~~~~p~~~~~----~P~~pGlGv 881 (983)
+++++||+|++|++++++|++++++|+. ..+.++.. .++.+|++.+|+.+++ +|++||||+
T Consensus 295 ~~~~~~~~es~i~~aa~~hlaaa~~~~~--------------~~~e~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv 360 (377)
T 3my9_A 295 PGYGGTLWEGGIALAAGTQLIAATPGIS--------------LGCEFYMPHHVLTEDVLEERIANSAGHVIVPDGPGLGI 360 (377)
T ss_dssp CEECCEECCSHHHHHHHHHHHHTCTTBC--------------SCBEESCTTSEECCCSSSSCCCEETTEEECCCSSBTSC
T ss_pred eEecCCCCCcHHHHHHHHHHHHhCCCCc--------------cceeecCchhhhhhhccCCCceeECCEEECCCCCCCCc
Confidence 9999999999999999999999999641 11122233 5678899888998884 999999999
Q ss_pred Eecchhhhhhhcccc
Q 041113 882 SVAKATHILQNLQIN 896 (983)
Q Consensus 882 ~~d~a~~~~~~~~~~ 896 (983)
++| ++.++++.+.
T Consensus 361 ~~d--~~~l~~~~~~ 373 (377)
T 3my9_A 361 SIS--EASLRGNAKI 373 (377)
T ss_dssp CCC--HHHHHHHSEE
T ss_pred ccC--HHHHHHhhhh
Confidence 999 8888888754
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-61 Score=548.35 Aligned_cols=359 Identities=19% Similarity=0.204 Sum_probs=299.9
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHH-HHhHhcc
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRF-LLHFMTG 570 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~-~~~~l~g 570 (983)
+|||++|+++.+++||+.||.++.+++. ..++.++|+|+|++|++||||+.+.+..+++...+...++. +.|.++|
T Consensus 7 ~mkI~~i~~~~~~~Pl~~p~~~s~g~~~---~~~~~~~V~v~td~G~~G~GE~~~~~~~~e~~~~~~~~i~~~l~p~l~G 83 (385)
T 3i6e_A 7 EQKIIAMDLWHLALPVVSARDHGIGRVE---GSCEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYAALDRYLRPLVIG 83 (385)
T ss_dssp CSBEEEEEEEEEECCC-----------------CEEEEEEEEETTSCEEEEEECCCTTTTCCHHHHHHHHHHTTHHHHTT
T ss_pred hcEEEEEEEEEEecccCCCeeccCcEEe---ceeeEEEEEEEECCCCEEEEeeccCCCcCCCHHHHHHHHHHHHHHHHCC
Confidence 4899999999999999999999987641 23788999999999999999999876444677777777777 8999999
Q ss_pred CcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEee
Q 041113 571 AKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALI 650 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~ 650 (983)
+++.+++.++.. +++.+ ...++|++|||+|||||+||.+|+|||+||||.. +++|++|+++
T Consensus 84 ~d~~~~~~~~~~-----l~~~~-----~~~~~A~said~ALwDl~gk~~g~Pl~~LLGg~~---------r~~v~~~~t~ 144 (385)
T 3i6e_A 84 RRVGDRVAIMDE-----AARAV-----AHCTEAKAALDSALLDLAGRISNLPVWALLGGKC---------RDTIPLSCSI 144 (385)
T ss_dssp CBGGGHHHHHHH-----HHHHS-----SSCHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCS---------CSEEEBEEEE
T ss_pred CCccCHHHHHHH-----HHHHh-----cCCHHHHHHHHHHHHHHHHHHcCCcHHHHhCccc---------CCceEEEEEc
Confidence 999887665532 12221 1257899999999999999999999999999986 5789999987
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCc
Q 041113 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQ 730 (983)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~ 730 (983)
. ..+++++.+++++++++||++||+|+|. .++++|++++++||+++ +++.|++|+|++|++++|+++++.|+++++.
T Consensus 145 ~-~~~~~~~~~~a~~~~~~G~~~~K~Kvg~-~~~~~d~~~v~avR~a~-~~~~l~vDan~~~~~~~A~~~~~~L~~~~i~ 221 (385)
T 3i6e_A 145 A-NPDFDADIALMERLRADGVGLIKLKTGF-RDHAFDIMRLELIARDF-PEFRVRVDYNQGLEIDEAVPRVLDVAQFQPD 221 (385)
T ss_dssp C-CSSHHHHHHHHHHHHHHTCCEEEEECSS-SCHHHHHHHHHHHHHHC-TTSEEEEECTTCCCGGGHHHHHHHHHTTCCS
T ss_pred C-CCCHHHHHHHHHHHHHcCCCEEEEecCC-CCHHHHHHHHHHHHHhC-CCCeEEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence 4 5689999999999999999999999997 36899999999999999 9999999999999999999999999999999
Q ss_pred eeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHcCCc
Q 041113 731 YIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRHGKM 807 (983)
Q Consensus 731 ~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~ 807 (983)
|||||++ +++++++|++++++||++||++++..+ +..+++ ..+|++|+|++++||++++++++++|+++|++
T Consensus 222 ~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~ 296 (385)
T 3i6e_A 222 FIEQPVRAHHFELMARLRGLTDVPLLADESVYGPED-----MVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLM 296 (385)
T ss_dssp CEECCSCTTCHHHHHHHHTTCSSCEEESTTCCSHHH-----HHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCE
T ss_pred EEECCCCcccHHHHHHHHHhCCCCEEEeCCcCCHHH-----HHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCE
Confidence 9999998 788999999999999999999999753 555554 45799999999999999999999999999999
Q ss_pred EEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccc-hhcccccCCCCCceeec----cCCCCeeeEE
Q 041113 808 AVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGT-YQWLKEDVTTDPISICH----NSCRGFVEAS 882 (983)
Q Consensus 808 ~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~d~~~~p~~~~~----~P~~pGlGv~ 882 (983)
++++|++|++|++++++|++++++|.. ..+.+.. ..++.+|++.+|+.+++ +|++||||++
T Consensus 297 ~~~~~~~es~i~~aa~~hlaaa~~~~~--------------~~~e~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~ 362 (385)
T 3i6e_A 297 AYGGDMFEAGLAHLAGTHMIAATPEIT--------------LGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGAR 362 (385)
T ss_dssp EEECCCSCCHHHHHHHHHHHHTCTTEE--------------EEECCCHHHHTCSSCSBSSCCCEETTEEECCCSSBTSSC
T ss_pred EEeCCCCccHHHHHHHHHHHHhCCCCc--------------cchhhcCchhhhhhhcccCCceeECCEEECCCCCCCCce
Confidence 999999999999999999999999641 1112222 25678898888888874 9999999999
Q ss_pred ecchhhhhhhcccc
Q 041113 883 VAKATHILQNLQIN 896 (983)
Q Consensus 883 ~d~a~~~~~~~~~~ 896 (983)
+| ++.++++.+.
T Consensus 363 ~d--~~~l~~~~~~ 374 (385)
T 3i6e_A 363 AD--PEKLEHYAVR 374 (385)
T ss_dssp BC--HHHHHHHEEE
T ss_pred EC--HHHHHhhhcc
Confidence 99 8888887754
|
| >2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-62 Score=550.79 Aligned_cols=356 Identities=18% Similarity=0.200 Sum_probs=307.2
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC---cCcccHHHHHHHHHH-HHhHh
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQLRF-LLHFM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~---~~~~~~~~~~~~l~~-~~~~l 568 (983)
|||++|+++.+++||+.||.++.++. ..++.++|+|+| ||++||||+.+.+ ++.++.+.+...++. +.|.|
T Consensus 1 MKI~~i~~~~~~~Pl~~p~~~s~~~~----~~~~~v~V~i~t-dG~~G~GE~~~~~~p~~~~e~~~~~~~~i~~~l~p~l 75 (370)
T 2chr_A 1 MKIDAIEAVIVDVPTKRPIQMSITTV----HQQSYVIVRVYS-EGLVGVGEGGSVGGPVWSAECAETIKIIVERYLAPHL 75 (370)
T ss_dssp CCCCEEEEEEEEEEEEEEEECSSCEE----EEEEEEEEEEEB-TTBCCEEECCCSTTTTTSSCCHHHHHHHHHHHTHHHH
T ss_pred CEEEEEEEEEEEcccCCceEccceEE----EEEEEEEEEEEE-CCcEEEEEecCCCCCccCcccHHHHHHHHHHHHHHHh
Confidence 79999999999999999999998764 458999999997 5999999998753 456676666666654 78999
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA 648 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~ 648 (983)
+|+++.++..++..+ ++.. ...++|++|||+|||||+||.+|+|||+||||.. ++.+++|.
T Consensus 76 iG~d~~~~~~~~~~~-----~~~~-----~~~~~A~said~AlwDl~gK~~g~Pl~~lLGg~~---------~~~~~~~~ 136 (370)
T 2chr_A 76 LGTDAFNVSGALQTM-----ARAV-----TGNASAKAAVEMALLDLKARALGVSIAELLGGPL---------RSAIPIAW 136 (370)
T ss_dssp TTSCTTCHHHHHHHH-----HTTC-----SSCHHHHHHHHHHHHHHHHHHTTCCHHHHTTCCS---------CSEEEBEE
T ss_pred cCCCcccHHHHHHHH-----hhcc-----cccHHHHHHHHHHHHHHHHHhcCCccccccCCcc---------ccccceee
Confidence 999998876655321 1111 2346899999999999999999999999999987 57788888
Q ss_pred eecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCC
Q 041113 649 LIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD 728 (983)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~ 728 (983)
++....+++.+.+.++.+.+.||++||+|+|. .++++|+++++++|+++|+++.||+|+|++||+++|+++++.|++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~g~~~~K~Kvg~-~~~~~d~~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~ 215 (370)
T 2chr_A 137 TLASGDTKRDLDSAVEMIERRRHNRFKVKLGF-RSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALG 215 (370)
T ss_dssp EECSSCHHHHHHHHHHHHHTTSCCEEEEECSS-SCHHHHHHHHHHHHHHTTTTSEEEEECTTCCCTHHHHHHHHHHHTTT
T ss_pred eeccCchhhhHHHHHHHHhhcccceeeccccc-CChHHHHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHhcC
Confidence 77666677778888888888999999999997 47899999999999999999999999999999999999999999999
Q ss_pred CceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcC
Q 041113 729 LQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHG 805 (983)
Q Consensus 729 i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~g 805 (983)
+.|||||++ |++++++|++++++|||+||++++..+ +..+++.+ +|++|+|++++|||+++++++++|+++|
T Consensus 216 ~~~iEeP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~-----~~~~~~~~a~d~i~~d~~~~GGit~~~~ia~~A~~~g 290 (370)
T 2chr_A 216 VELIEQPVGRENTQALRRLSDNNRVAIMADESLSTLAS-----AFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASG 290 (370)
T ss_dssp CCEEECCSCSSCHHHHHHHHHHCSSEEEESSSCCSHHH-----HHHHHTTTCCSEECCCHHHHTSHHHHHHHHHHHHHHT
T ss_pred CceecCCCChhhhhhhhHHhhhccCCccCCccCCCHHH-----HHHHHHcCCCcEEEeCCcccCCHHHHHHHHHHHHHcC
Confidence 999999998 789999999999999999999999763 66666654 7999999999999999999999999999
Q ss_pred CcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeE
Q 041113 806 KMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEA 881 (983)
Q Consensus 806 i~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv 881 (983)
+++++||+++++|++++++|+++++||+. ..+.+..+.++.++++.+|+.+++ +|++|||||
T Consensus 291 i~~~~~~~~~~~i~~aa~~hlaa~~p~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGv 356 (370)
T 2chr_A 291 IASYGGTMLDSTIGTSVALQLYSTVPSLP--------------FGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHGM 356 (370)
T ss_dssp CEECCCCCSCCHHHHHHHHHHHTTSSCCT--------------TCBCCCHHHHBSCCSBSCCCCBCSSEEECCCSSSTTC
T ss_pred CeEEeCCCcccHHHHHHHHHHHHhCCCCC--------------cccccCchhhhhhhccCCCceEECCEEECCCCCCCCc
Confidence 99999999999999999999999998642 112234556677888889998884 999999999
Q ss_pred Eecchhhhhhhcc
Q 041113 882 SVAKATHILQNLQ 894 (983)
Q Consensus 882 ~~d~a~~~~~~~~ 894 (983)
++| ++.+++|.
T Consensus 357 e~d--~~~l~~y~ 367 (370)
T 2chr_A 357 TLD--EDKVRQYA 367 (370)
T ss_dssp CBC--HHHHHHHC
T ss_pred eEC--HHHHHHhh
Confidence 999 88888874
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-61 Score=543.21 Aligned_cols=355 Identities=18% Similarity=0.150 Sum_probs=302.5
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCc-C-cCcccHHHHHHHHHHHHhHhc
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL-E-IHKENLLDAEEQLRFLLHFMT 569 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~-~-~~~~~~~~~~~~l~~~~~~l~ 569 (983)
+|||++|+++.+++||+.||.++.+.+ ....++.++|+|+|++|++||||+.+. + ++.++...+...++.+.|.|+
T Consensus 2 ~MkI~~i~~~~~~~pl~~p~~~s~g~~--~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~l~~l~p~l~ 79 (378)
T 3eez_A 2 SLKITRITVYQVDLPLEHPYWLSGGRL--KFELLDATLVKLETDAGITGWGEGTPWGHTYVPAHGPGIRAGIETMAPFVL 79 (378)
T ss_dssp -CCEEEEEEEEEEEEBSSCCC--------CCCEEEEEEEEEEETTCCCEEEEECCSCSSSSSCCHHHHHHHHHHHHHHHT
T ss_pred CcEEEEEEEEEEeccCCCceeecCCcc--eeeeeeEEEEEEEECCCCEEEecccCCCCccCCCcHHHHHHHHHHHHHHhc
Confidence 389999999999999999999887621 013489999999999999999999876 3 445566667777888999999
Q ss_pred cCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEe
Q 041113 570 GAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICAL 649 (983)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~ 649 (983)
|+++.+++.++..+ ...+ ...++|++|||+|||||+||.+|+|||+||||.. +++||+|++
T Consensus 80 G~d~~~~~~~~~~l-----~~~~-----~g~~~A~said~ALwDl~gk~~g~Pl~~LlGg~~---------r~~v~~~~~ 140 (378)
T 3eez_A 80 GLDPRRLLDVERAM-----DIAL-----PGHLYAKSPIDMACWDIAGQAAGLPIADLMGGGS---------RTPRPIASS 140 (378)
T ss_dssp TSCTTCHHHHHHHH-----HHHS-----SSCHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCC---------CSCEEBBCC
T ss_pred CCCcCCHHHHHHHH-----HHHh-----cCcHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCC---------CCeEEEEEE
Confidence 99998766655321 1111 1247899999999999999999999999999986 578999988
Q ss_pred ecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCC
Q 041113 650 IDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729 (983)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i 729 (983)
+. ..+++++++++++++++||++||+|+|. ++++|+++|++||+++|+++.|++|+|++|+.++|+++++.|+++++
T Consensus 141 ~~-~~~~e~~~~~a~~~~~~G~~~iKiK~G~--~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i 217 (378)
T 3eez_A 141 VG-AKSVEETRAVIDRYRQRGYVAHSVKIGG--DVERDIARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLHV 217 (378)
T ss_dssp BC-SCCHHHHHHHHHHHHHTTCCEEEEECCS--CHHHHHHHHHHHTTSCCTTCEEEEECTTCCCHHHHHHHHHHTGGGTC
T ss_pred ec-CCCHHHHHHHHHHHHhCCCCEEEeccCC--CHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHhccCCe
Confidence 74 6789999999999999999999999997 79999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcE
Q 041113 730 QYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMA 808 (983)
Q Consensus 730 ~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~ 808 (983)
|||||++++++++++++++++||++||++++..+ +..+++. ++|++|+|++++||++++++++++|+++|+++
T Consensus 218 -~iEqP~~~~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~l~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~g~~~ 291 (378)
T 3eez_A 218 -MFEQPGETLDDIAAIRPLHSAPVSVDECLVTLQD-----AARVARDGLAEVFGIKLNRVGGLTRAARMRDIALTHGIDM 291 (378)
T ss_dssp -CEECCSSSHHHHHHTGGGCCCCEEECTTCCSHHH-----HHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCEE
T ss_pred -EEecCCCCHHHHHHHHhhCCCCEEECCCCCCHHH-----HHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHcCCEE
Confidence 9999999999999999999999999999999753 5555554 57999999999999999999999999999999
Q ss_pred EeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCC-Cceeec----cCCCCeeeEEe
Q 041113 809 VVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTD-PISICH----NSCRGFVEASV 883 (983)
Q Consensus 809 ~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~-p~~~~~----~P~~pGlGv~~ 883 (983)
+++|++||+|++++++||+++++|.. ..+.+++..|+.+|+..+ |+.+++ +|++|||||++
T Consensus 292 ~~~~~~es~i~~aa~~hlaaa~~~~~--------------~~~~~~~~~~~~~d~~~~~~~~~~~G~i~~p~~PGlGv~~ 357 (378)
T 3eez_A 292 FVMATGGSVLADAEALHLAATIPDHA--------------CHAVWACQDMLTVDIAGGRGPRNIDGHLHLPETPGLGVHP 357 (378)
T ss_dssp EEECSSCSHHHHHHHHHHHHTSCGGG--------------BCCBCCSGGGBSCCTTTTCSSCCBTTEECCCCSSBTSCCC
T ss_pred EcCCCCCCHHHHHHHHHHHHhCCCcc--------------ceeeccccchhhhhcccCCCCeeECCEEECCCCCCCCccc
Confidence 99999999999999999999998631 112345667888898877 788874 99999999999
Q ss_pred cchhhhhhh
Q 041113 884 AKATHILQN 892 (983)
Q Consensus 884 d~a~~~~~~ 892 (983)
| ++.+++
T Consensus 358 d--~~~l~~ 364 (378)
T 3eez_A 358 D--EDALGD 364 (378)
T ss_dssp C--TTSSCS
T ss_pred C--HHHHhC
Confidence 9 555433
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-62 Score=549.34 Aligned_cols=355 Identities=22% Similarity=0.223 Sum_probs=302.9
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHHHHHhHhcc
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLRFLLHFMTG 570 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~~~~~~l~g 570 (983)
+|||++|+++.+++||+.||.++.+.. ..++.++|+|+|++|++||||+.+.+ +++++...+...++.+.|.|+|
T Consensus 4 ~mkI~~i~~~~~~~pl~~p~~~s~g~~----~~~~~~~V~l~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~l~~~l~G 79 (389)
T 3s5s_A 4 PTLIRRVSIEALDIPLHEPFGIAGGAQ----ERAANLLVTVELADGTLGFGEAAPLPAFNGETQDGSRAAAVSLREAVVG 79 (389)
T ss_dssp TTBEEEEEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEEETTSCEEEEEECCCHHHHSCCHHHHHHHHHHTHHHHTT
T ss_pred CCEEEEEEEEEEEEecCCceeccCceE----EeeeEEEEEEEECCCCEEEEeccCCCCcCccCHHHHHHHHHHHHHHhcC
Confidence 489999999999999999999988764 45899999999999999999999875 3567777777778889999999
Q ss_pred CcccccccccccCchhhhhhhcCCCCCcchh-hHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEe
Q 041113 571 AKISYFLPLLKGSFSSWIWSTLGIPACEIFP-SVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICAL 649 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~ 649 (983)
+++.+++.++..+ ...+. ..+ +|++|||+|||||+||.+|+|||+||||.. ++|++|++
T Consensus 80 ~d~~~~~~~~~~l-----~~~~~-----~~~~~A~said~ALwDl~gk~~g~Pl~~LLGg~~----------~~v~~~~t 139 (389)
T 3s5s_A 80 SDARAWRAVARAL-----REASG-----GGAGAARCAIETAILDALTKRAGMPLWAFFGGSG----------TALTTDIT 139 (389)
T ss_dssp SBGGGHHHHHHHH-----HHHHT-----TCCHHHHHHHHHHHHHHHHHTTTCBHHHHTTCSC----------SEEECCEE
T ss_pred CCccCHHHHHHHH-----HHhhc-----cChHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC----------CceEEEee
Confidence 9998766555322 11111 124 899999999999999999999999999975 56888888
Q ss_pred ecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhc--ccC
Q 041113 650 IDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLI--KDC 727 (983)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l--~~~ 727 (983)
+. ..+++++++++++++++||++||+|+|.. ++++|+++|++||+++ +++.||||||++||+++|+++++.| +++
T Consensus 140 ~~-~~~~e~~~~~a~~~~~~G~~~iKlKvg~~-~~~~d~~~v~avR~~~-~~~~L~vDaN~~w~~~~A~~~~~~L~~~~~ 216 (389)
T 3s5s_A 140 IT-TGSPERAEEAARRAAAMGFRALKVKVGGR-LAASDPARIEAIHAAA-PGASLILDGNGGLTAGEALALVAHARRLGA 216 (389)
T ss_dssp EC-SSCSHHHHHHHHHHHHHTCCEEEEECCGG-GTTTHHHHHHHHHHHC-TTCEEEEECTTCSCHHHHHHHHHHHHHTTC
T ss_pred ec-CCCHHHHHHHHHHHHHcCCCeEEEEecCC-ChHHHHHHHHHHHHhC-CCCeEEEECCCCCCHHHHHHHHHHHhhCCC
Confidence 73 56899999999999999999999999972 4789999999999999 5789999999999999999999999 999
Q ss_pred CCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHc
Q 041113 728 DLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRH 804 (983)
Q Consensus 728 ~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~ 804 (983)
++.|||||++ |++++++|++++++|||+||++++..+ +..+++. .+|++|+|+++ ||++++++++++|+++
T Consensus 217 ~i~~iEeP~~~~d~~~~~~l~~~~~iPIa~dEs~~~~~~-----~~~~i~~~a~d~v~~k~~~-GGit~~~~i~~~A~~~ 290 (389)
T 3s5s_A 217 DVALLEQPVPRDDWDGMKEVTRRAGVDVAADESAASAED-----VLRVAAERAATVVNIKLMK-GGIAEALDIAAVARAA 290 (389)
T ss_dssp EEEEEECCSCTTCHHHHHHHHHHSSSCEEESTTCSSHHH-----HHHHHHTTCCSEEEECHHH-HHHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCcccHHHHHHHHhhCCCCEEECCCCCCHHH-----HHHHHHcCCCCEEEecCCC-CCHHHHHHHHHHHHHc
Confidence 9999999998 789999999999999999999998753 5555544 57999999999 9999999999999999
Q ss_pred CCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCC-CCee
Q 041113 805 GKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSC-RGFV 879 (983)
Q Consensus 805 gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~-~pGl 879 (983)
|+++++||++||+||+++++||++++||+. + +++++..++.+|++.+++.+++ +|+ +|||
T Consensus 291 gi~~~~~~~~es~ig~aa~~hlaaa~p~~~----------~-----~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~~PGl 355 (389)
T 3s5s_A 291 GLGLMIGGMVESVLAMTASACFAAGLGGFS----------F-----VDLDTPLFLAENPFDGGFVQRGPALSLEGIRAGH 355 (389)
T ss_dssp TCEEEECCSSCCHHHHHHHHHHHHHHCCEE----------E-----ECCCGGGGBSCCCEECSCEEETTEEECTTCCSBT
T ss_pred CCeEEecCCcccHHHHHHHHHHHhhCCCCC----------e-----eeccchhhhhhccccCCceeECCEEECCCCCCcC
Confidence 999999999999999999999999998641 1 1345667788898888888884 999 9999
Q ss_pred eEEecchhhhhhhcccc
Q 041113 880 EASVAKATHILQNLQIN 896 (983)
Q Consensus 880 Gv~~d~a~~~~~~~~~~ 896 (983)
||++| ++.++++..+
T Consensus 356 Gve~d--~~~~~~~~~~ 370 (389)
T 3s5s_A 356 GVTPQ--RRSPAAGAEN 370 (389)
T ss_dssp CCEEC--------CCEE
T ss_pred CcccC--HHHHhhccch
Confidence 99999 8887777654
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-61 Score=541.21 Aligned_cols=355 Identities=20% Similarity=0.284 Sum_probs=299.8
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHH-HHHhHhcc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLR-FLLHFMTG 570 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~-~~~~~l~g 570 (983)
|||++|+++.+++||+.||.++.+.+ ..++.++|+|+|++|++||||+.+.+ +++++...+...++ .+.|.++|
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~----~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~i~~~l~~~l~G 76 (367)
T 3dg3_A 1 MKIVAIGAIPFSIPYTKPLRFASGEV----HAAEHVLVRVHTDDGIVGVAEAPPRPFTYGETQTGIVAVIEQYFAPALIG 76 (367)
T ss_dssp CBEEEEEEEEEEECBC---------------CEEEEEEEEEETTSCEEEEEECCCTTTTCCCHHHHHHHHHHTHHHHHTT
T ss_pred CEEEEEEEEEEEeeccCCeeccCeEE----eeeeEEEEEEEECCCCEEEEeccCCCCccCCCHHHHHHHHHHHHHHHHcC
Confidence 79999999999999999999988765 34899999999999999999998876 35677777777777 68999999
Q ss_pred CcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEee
Q 041113 571 AKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALI 650 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~ 650 (983)
+++.+++.++..+ ... ...++|++|||+|||||+||.+|+|||+|||| . +++|++|+++
T Consensus 77 ~d~~~~~~~~~~l-----~~~------~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg-~---------~~~v~~~~~~ 135 (367)
T 3dg3_A 77 LTLTEREVAHTRM-----ART------VGNPTAKAAIDMAMWDALGQSLRLSVSEMLGG-Y---------TDRMRVSHML 135 (367)
T ss_dssp CBTTCHHHHHHHH-----TTS------CSCHHHHHHHHHHHHHHHHHHHTCBHHHHHTC-C---------CSEEEEEEEE
T ss_pred CCcCCHHHHHHHH-----Hhc------cCchHHHHHHHHHHHHHHHHHcCCcHHHHhCC-C---------CCeEEEEEEe
Confidence 9988765554321 111 23578999999999999999999999999999 4 4789999887
Q ss_pred cCCCCHHHHHHHHHHhhhc-CCCEEEEeccCCCChH-HHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCC
Q 041113 651 DSNKSPVEVASIATTLVEE-GFTAIKLKVARRADPI-KDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD 728 (983)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~-G~~~~KiKig~~~~~~-~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~ 728 (983)
+ ..+++++++++++++++ ||++||+|+|. ++. +|+++|++||+++|+++.|++|+|++|+.++|+++++.|++++
T Consensus 136 ~-~~~~~~~~~~a~~~~~~~G~~~~K~K~g~--~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~ 212 (367)
T 3dg3_A 136 G-FDDPVKMVAEAERIRETYGINTFKVKVGR--RPVQLDTAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADLD 212 (367)
T ss_dssp E-SSCHHHHHHHHHHHHHHHCCCEEEEECCC--SSTHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTSC
T ss_pred c-CCCHHHHHHHHHHHHHhcCccEEEEeeCC--ChhhhHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4 56899999999999998 99999999997 455 9999999999999999999999999999999999999999999
Q ss_pred CceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcC
Q 041113 729 LQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHG 805 (983)
Q Consensus 729 i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~g 805 (983)
+.|||||++ +++++++|++++++||++||++.+..+ +..+++. .+|++|+|++++ |++++++++++|+++|
T Consensus 213 i~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~i~~~~~d~v~~k~~~~-Git~~~~ia~~A~~~g 286 (367)
T 3dg3_A 213 LLFAEELCPADDVLSRRRLVGQLDMPFIADESVPTPAD-----VTREVLGGSATAISIKTART-GFTGSTRVHHLAEGLG 286 (367)
T ss_dssp CSCEESCSCTTSHHHHHHHHHHCSSCEEECTTCSSHHH-----HHHHHHHTSCSEEEECHHHH-TTHHHHHHHHHHHHHT
T ss_pred CCEEECCCCcccHHHHHHHHHhCCCCEEecCCcCCHHH-----HHHHHHcCCCCEEEeehhhh-hHHHHHHHHHHHHHcC
Confidence 999999998 788899999999999999999998753 5555544 479999999999 9999999999999999
Q ss_pred CcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeE
Q 041113 806 KMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEA 881 (983)
Q Consensus 806 i~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv 881 (983)
+++++|||++|+||+++++||+++++|.. ...+.++++.++.+|++.+|+.+++ +|++|||||
T Consensus 287 i~~~~~~~~es~i~~aa~~hlaaa~~~~~-------------~~~~~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv 353 (367)
T 3dg3_A 287 LDMVMGNQIDGQIGTACTVSFGTAFERTS-------------RHAGELSNFLDMSDDLLTVPLQISDGQLHRRPGPGLGI 353 (367)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHTTCHHHH-------------TSCEECCGGGGBSCCSBSSCCCCBTTEEECCSSSBTSC
T ss_pred CeEEECCcCCcHHHHHHHHHHHHhCCccc-------------CcchhccchhhhhhcccCCCceeeCCEEECCCCCcCCc
Confidence 99999999999999999999999998421 1112344556778899888988884 999999999
Q ss_pred Eecchhhhhhhcccc
Q 041113 882 SVAKATHILQNLQIN 896 (983)
Q Consensus 882 ~~d~a~~~~~~~~~~ 896 (983)
++| ++.+++++++
T Consensus 354 ~~d--~~~l~~~~~~ 366 (367)
T 3dg3_A 354 EID--PDKLAHYRTD 366 (367)
T ss_dssp CBC--HHHHHHHBCC
T ss_pred eEC--HHHHHHhhcC
Confidence 999 8888888764
|
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-61 Score=538.14 Aligned_cols=345 Identities=19% Similarity=0.209 Sum_probs=295.9
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHHHHHhHhcc
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLRFLLHFMTG 570 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~~~~~~l~g 570 (983)
+|||++|+++.+++||+.||.++.+.. ..++.++|+|+|++|++||||+.+.+ +++++...+...++.+.|.|+|
T Consensus 4 ~mkI~~i~~~~~~~pl~~p~~~s~g~~----~~~~~~~V~l~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~l~~~l~G 79 (365)
T 3ik4_A 4 PTTIQAISAEAINLPLTEPFAIASGAQ----AVAANVLVKVQLADGTLGLGEAAPFPAVSGETQTGTSAAIERLQSHLLG 79 (365)
T ss_dssp TTBEEEEEEEEEEEEBSCC------------CEEEEEEEEEEETTSCEEEEEECCCCTTTCCCHHHHHHHHHHHGGGTTT
T ss_pred CCEEEEEEEEEEEEecCCCeEccCeEE----EeeeEEEEEEEECCCCEEEEecccCCCcCcCCHHHHHHHHHHHHHHHcC
Confidence 489999999999999999999998765 35899999999999999999999876 4567777777778889999999
Q ss_pred CcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEee
Q 041113 571 AKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALI 650 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~ 650 (983)
+++.+++.++.. +...+ ...++|++|||+|||||+||.+|+|||+||||.. ++|++|+++
T Consensus 80 ~d~~~~~~~~~~-----l~~~~-----~~~~~a~said~ALwDl~gk~~g~Pl~~LLGg~~----------~~v~~~~~~ 139 (365)
T 3ik4_A 80 ADVRGWRKLAAM-----LDHAE-----HEAAAARCGLEMAMLDALTRHYHMPLHVFFGGVS----------KQLETDMTI 139 (365)
T ss_dssp CBGGGHHHHHHH-----HHHHC-----TTCHHHHHHHHHHHHHHHHHHTTCBHHHHTTCSC----------SEEEBCEEE
T ss_pred CCccCHHHHHHH-----HHHHh-----cccHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC----------CceeeeEEe
Confidence 998876555432 22211 1257899999999999999999999999999975 578988887
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhc--ccCC
Q 041113 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLI--KDCD 728 (983)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l--~~~~ 728 (983)
. ..+++++++++++++++||++||+|+|. .++++|+++|++||+++ +++.||+|+|++|++++|+++++.| ++++
T Consensus 140 ~-~~~~e~~~~~a~~~~~~G~~~iK~Kvg~-~~~~~d~~~v~avr~~~-~~~~l~vDaN~~~~~~~A~~~~~~L~~~~~~ 216 (365)
T 3ik4_A 140 T-AGDEVHAAASAKAILARGIKSIKVKTAG-VDVAYDLARLRAIHQAA-PTAPLIVDGNCGYDVERALAFCAACKAESIP 216 (365)
T ss_dssp C-CSCHHHHHHHHHHHHHTTCCCEEEECCS-SCHHHHHHHHHHHHHHS-SSCCEEEECTTCCCHHHHHHHHHHHHHTTCC
T ss_pred c-CCCHHHHHHHHHHHHHcCCCEEEEEeCC-CCHHHHHHHHHHHHHhC-CCCeEEEECCCCCCHHHHHHHHHHHhhCCCC
Confidence 4 5789999999999999999999999997 35899999999999999 5789999999999999999999999 9999
Q ss_pred CceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHcC
Q 041113 729 LQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRHG 805 (983)
Q Consensus 729 i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~g 805 (983)
+.|||||++ |++++++|++++++||++||++++..+ +..+++ ..+|++|+|+++ ||++++++++++|+++|
T Consensus 217 i~~iEeP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~-----~~~~i~~~a~d~v~ik~~~-GGit~~~~i~~~A~~~g 290 (365)
T 3ik4_A 217 MVLFEQPLPREDWAGMAQVTAQSGFAVAADESARSAHD-----VLRIAREGTASVINIKLMK-AGVAEGLKMIAIAQAAG 290 (365)
T ss_dssp EEEEECCSCTTCHHHHHHHHHHSSSCEEESTTCSSHHH-----HHHHHHHTCCSEEEECHHH-HCHHHHHHHHHHHHHHT
T ss_pred ceEEECCCCcccHHHHHHHHhhCCCCEEECCCCCCHHH-----HHHHHHhCCCCEEEEcCCc-cCHHHHHHHHHHHHHcC
Confidence 999999998 789999999999999999999998753 555554 457999999999 99999999999999999
Q ss_pred CcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeE
Q 041113 806 KMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEA 881 (983)
Q Consensus 806 i~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv 881 (983)
+++++|+++||+|++++++||++++||+. + +++++..++.+|++.+++.+++ +|++||||+
T Consensus 291 i~~~~~~~~es~ig~aa~~hlaaa~p~~~----------~-----~el~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv 355 (365)
T 3ik4_A 291 LGLMIGGMVESILAMSFSANLAAGNGGFD----------F-----IDLDTPLFIAEHPFIGGFAQTGGTLQLADVAGHGV 355 (365)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHCCEE----------E-----ECCCGGGGBSCCSEEESCEEETTEEECCSCSBTCE
T ss_pred CeEEecCCcccHHHHHHHHHHHHhCCCCC----------e-----eccccchhhhhcccCCCceeECCEEECCCCCccCC
Confidence 99999999999999999999999998641 1 2345667888899888888884 999999999
Q ss_pred Eec
Q 041113 882 SVA 884 (983)
Q Consensus 882 ~~d 884 (983)
|+.
T Consensus 356 e~~ 358 (365)
T 3ik4_A 356 NLE 358 (365)
T ss_dssp EEC
T ss_pred CCC
Confidence 976
|
| >4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-60 Score=542.52 Aligned_cols=366 Identities=19% Similarity=0.212 Sum_probs=302.2
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAK 572 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~ 572 (983)
|||++|+++.+++||+.||.++.+.+ ..++.++|||+|++|++|||||.+.... .....+.+.|.|+|++
T Consensus 1 MKIt~i~~~~~~~pl~~p~~~a~~~~----~~~~~vlV~i~td~G~~G~GE~~~~~~~------~~~~~~~~~~~liG~d 70 (378)
T 4hpn_A 1 MKITAVRTHLLEHRLDTPFESASMRF----DRRAHVLVEIECDDGTVGWGECLGPARP------NAAVVQAYSGWLIGQD 70 (378)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSCEE----EEEEEEEEEEEETTSCEEEEEECSCHHH------HHHHHHHHHTTTTTSC
T ss_pred CEEEEEEEEEEeccCCCCeECCCEEE----EEEEEEEEEEEECCCCEEEEEecCCcch------HHHHHHHHHHHHcCCC
Confidence 79999999999999999999998765 4599999999999999999999764311 1234467889999999
Q ss_pred ccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecC
Q 041113 573 ISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDS 652 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~ 652 (983)
+.+++.++..++. ........+...+|++|||+|||||+||.+|+|||+||||.. ++++++|++...
T Consensus 71 ~~~~e~~~~~l~~----~~~~~~~~g~~~~A~said~AlwDl~gk~~g~Pl~~lLGg~~---------~~~~~~y~~~~~ 137 (378)
T 4hpn_A 71 PRQTEKIWAVLYN----ALRDQGQRGLSLTALSGIDIALWDIKGKHYGASISMLLGGRW---------RESVRAYATGSF 137 (378)
T ss_dssp TTCHHHHHHHHHH----HTCTTCSSTHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCS---------CSEEEEEEECCC
T ss_pred hHHHHHHHHHHHH----HhhhcccccchHHHHHHHHHHHHHHhhhhccCccccccCCcc---------ccCcceeeeecc
Confidence 9887666543221 111112234567899999999999999999999999999987 678999987532
Q ss_pred ----CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCC
Q 041113 653 ----NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD 728 (983)
Q Consensus 653 ----~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~ 728 (983)
...+++.++++.+++++||+++|+|+|. ++++|+++|+++|+++|+++.||||+|++||+++|+++++.|++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Gf~~~K~k~g~--~~~~di~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~ 215 (378)
T 4hpn_A 138 KRDNVDRVSDNASEMAERRAEGFHACKIKIGF--GVEEDLRVIAAVREAIGPDMRLMIDANHGYTVTEAITLGDRAAGFG 215 (378)
T ss_dssp BCTTCCHHHHHHHHHHHHHHTTCSEEEEECCS--CHHHHHHHHHHHHHHHTTTSEEEEECTTCCCHHHHHHHHHHHGGGC
T ss_pred ccccchhHHHHHHHHHHHHHhccceecccccC--ChHHHHHHHHHHHHhcCCcEEEEEecCcccCHHHHHHHHhhhhhcc
Confidence 2346777888888889999999999997 7999999999999999999999999999999999999999999999
Q ss_pred CceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcC
Q 041113 729 LQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHG 805 (983)
Q Consensus 729 i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~g 805 (983)
+.|||||++ |++++++|++++++|||+||++++..+ +..+++. .+|++|+|++++|||+++++++++|+++|
T Consensus 216 i~~iEeP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~-----~~~~i~~~a~d~i~~d~~~~GGit~~~~ia~~A~~~g 290 (378)
T 4hpn_A 216 IDWFEEPVVPEQLDAYARVRAGQPIPVAGGETWHGRYG-----MWQALSAGAVDILQPDLCGCGGFSEIQKIATLATLHG 290 (378)
T ss_dssp CSCEECCSCTTCHHHHHHHHHHSSSCEEECTTCCHHHH-----HHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHHHHHT
T ss_pred cchhhcCCCccchhhhHHHHhhCCceeeCCcCccchHh-----HHHHHHcCCCCEEeeCCeeCCChhHHHHHHHHHHHcC
Confidence 999999998 789999999999999999999999764 5666654 57999999999999999999999999999
Q ss_pred CcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeE
Q 041113 806 KMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEA 881 (983)
Q Consensus 806 i~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv 881 (983)
+++ ++|++++++++++++|+++++++..... ....+...+ ..+..+|.++++.+|+.+++ +|++|||||
T Consensus 291 i~v-~~h~~~~~i~~aa~~h~~aa~~~~~~~~-----~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGv 363 (378)
T 4hpn_A 291 VRI-VPHVWGTGVQIAAALQFMAAMTPDPVRV-----NPIEPIMEF-DRTHNPFRQAVLREPLEAVNGVVTIPDGPGLGI 363 (378)
T ss_dssp CEE-CCBCCSSHHHHHHHHHHHHHCCCSSCCS-----SCCCCCEEE-ECSCCHHHHHTBSSCCCCBTTEEECCCSSBTSC
T ss_pred CeE-EeCCCCcHHHHHHHHHHHHHcCcccccc-----cccccceee-ccccchhhhhhccCCCeeECCEEECCCCCCCcc
Confidence 995 6899999999999999999887531100 000011111 11234567788899998884 999999999
Q ss_pred Eecchhhhhhhccccc
Q 041113 882 SVAKATHILQNLQINN 897 (983)
Q Consensus 882 ~~d~a~~~~~~~~~~~ 897 (983)
++| ++.++++++.+
T Consensus 364 e~d--~~~l~~y~v~d 377 (378)
T 4hpn_A 364 EIN--RDALTEFRMPD 377 (378)
T ss_dssp CBC--HHHHHHTBCCC
T ss_pred eEC--HHHHhhCCCCC
Confidence 999 99999998754
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-60 Score=536.15 Aligned_cols=354 Identities=20% Similarity=0.272 Sum_probs=299.3
Q ss_pred cCCccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHh
Q 041113 487 SCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLH 566 (983)
Q Consensus 487 ~~~~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~ 566 (983)
.++| |||++|+++.+++|++.||.++.+.. ..++.++|||+|++|++||||+.+. ++ +...++.+.|
T Consensus 20 ~~~m--MkI~~i~~~~~~~pl~~p~~~s~g~~----~~~~~~~V~v~td~G~~G~GE~~~g----~~---~~~~i~~l~p 86 (398)
T 4dye_A 20 FQSM--MKITDVDVWVVNLPLVNPFTSSFETK----TGETRTVVRVRTDSGVEGWGETMWG----AP---VAAIVRRMAP 86 (398)
T ss_dssp ---C--CCEEEEEEEEEEEEEEEEEECSSCEE----EEEEEEEEEEEETTSCEEEEEEECS----HH---HHHHHHHHHH
T ss_pred cCCC--ceEEEEEEEEEeeccccccccccccc----ccceEEEEEEEECCCCEEEEeecCc----hH---HHHHHHHHHH
Confidence 4566 99999999999999999999998754 3488999999999999999999762 22 3455678999
Q ss_pred HhccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEE
Q 041113 567 FMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKI 646 (983)
Q Consensus 567 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~ 646 (983)
.++|+++.+++.++..+.....+. + ...++|++|||+|||||+||.+|+|||+||||.. +++|++
T Consensus 87 ~liG~d~~~~~~~~~~l~~~~~~~--g----~~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~---------r~~v~~ 151 (398)
T 4dye_A 87 DLIGTSPFALEAFHRKQHMVPFFY--G----YLGYAAIAAVDVACWDAMGKATGQSVTDLLGGAV---------RDEVPI 151 (398)
T ss_dssp HHTTCCTTCHHHHHHHTTTHHHHH--H----HHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCS---------CSEEEB
T ss_pred HHcCCCccCHHHHHHHHHhhhhhh--c----cccHHHHHHHHHHHHHHHHHHcCCcHHHHcCCCc---------CCeEEE
Confidence 999999988766665432211010 0 1235899999999999999999999999999976 578999
Q ss_pred EEeec-----CC---CCHHHHHHHHHHhhhc-CCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHH
Q 041113 647 CALID-----SN---KSPVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEA 717 (983)
Q Consensus 647 ~~~~~-----~~---~~~~~~~~~~~~~~~~-G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a 717 (983)
|+++. +. .+++++++++++++++ ||++||+|+|. ++++|++++++||+++ +++.|+||+|++|++++|
T Consensus 152 y~s~~~~~~~g~~~~~~~e~~~~~a~~~~~~~G~~~~K~KvG~--~~~~d~~~v~avR~~~-~~~~l~vDaN~~w~~~~A 228 (398)
T 4dye_A 152 TALITRADAPGATPADLPKAMAEHAVRVVEEGGFDAVKLKGTT--DCAGDVAILRAVREAL-PGVNLRVDPNAAWSVPDS 228 (398)
T ss_dssp EEEECGGGSTTCCTTTHHHHHHHHHHHHHHHHCCSEEEEECCS--CHHHHHHHHHHHHHHC-TTSEEEEECTTCSCHHHH
T ss_pred EEEEeccccCCcccCCCHHHHHHHHHHHHHhcCCCEEEEecCC--CHHHHHHHHHHHHHhC-CCCeEEeeCCCCCCHHHH
Confidence 98762 11 2369999999999999 99999999995 7999999999999999 999999999999999999
Q ss_pred HHHHhhcccCCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHH
Q 041113 718 LEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGL 796 (983)
Q Consensus 718 ~~~~~~l~~~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~ 796 (983)
+++++.|+++++.|||||+++++++++|++++++||++||++.+..+ +..+++. .+|++|+|++++||++++++
T Consensus 229 ~~~~~~l~~~~i~~iEqP~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~i~~~a~d~v~~k~~~~GGit~~~~ 303 (398)
T 4dye_A 229 VRAGIALEELDLEYLEDPCVGIEGMAQVKAKVRIPLCTNMCVVRFED-----FAPAMRLNAVDVIHGDVYKWGGIAATKA 303 (398)
T ss_dssp HHHHHHHGGGCCSEEECCSSHHHHHHHHHHHCCSCEEESSSCCSGGG-----HHHHHHTTCCSEEEECHHHHTSHHHHHH
T ss_pred HHHHHHHhhcCCCEEcCCCCCHHHHHHHHhhCCCCEEeCCcCCCHHH-----HHHHHHhCCCCEEEeCccccCCHHHHHH
Confidence 99999999999999999999889999999999999999999999875 5555544 57999999999999999999
Q ss_pred HHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----
Q 041113 797 IARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH---- 872 (983)
Q Consensus 797 ~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~---- 872 (983)
++++|+++|+++++|++.+++|+.++++|+++++||.. ..+ .....++.+|++ +|+.+++
T Consensus 304 ia~~A~~~gi~~~~h~~~e~~i~~aa~l~laaa~p~~~--------------~~~-d~~~~~~~~d~~-~~~~~~~G~i~ 367 (398)
T 4dye_A 304 LAAHCETFGLGMNLHSGGELGIATAAHLAVVSSTPVLS--------------RAI-DSMYYLHADDII-EPLHLENGRLR 367 (398)
T ss_dssp HHHHHHHHTCEEEECCSCCCHHHHHHHHHHHHTCTTCC--------------SCB-CCSGGGBSCCSB-SCCCEETTEEE
T ss_pred HHHHHHHcCCeEEEcCCcchHHHHHHHHHHHhcCCccc--------------eee-cccchhhhhhcc-CCceeeCCEEE
Confidence 99999999999999999999999999999999998631 111 112456777887 6888874
Q ss_pred cCCCCeeeEEecchhhhhhhcc
Q 041113 873 NSCRGFVEASVAKATHILQNLQ 894 (983)
Q Consensus 873 ~P~~pGlGv~~d~a~~~~~~~~ 894 (983)
+|++|||||++| ++.++++.
T Consensus 368 vp~~PGlGve~d--~~~l~~~~ 387 (398)
T 4dye_A 368 VPSGPGLGVSVD--EDKLRHYA 387 (398)
T ss_dssp CCCSSBTCCCBC--HHHHHHHH
T ss_pred CCCCCCCCceeC--HHHHHHHH
Confidence 999999999999 77777765
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-61 Score=540.05 Aligned_cols=345 Identities=21% Similarity=0.226 Sum_probs=292.1
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHHH-HHhHhcc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLRF-LLHFMTG 570 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~~-~~~~l~g 570 (983)
|||++|+++.+++||+.||.++.+.. ..++.++|+|+|++|++||||+.+.+ +++++...+...++. +.|.++|
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~----~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~~l~~~l~G 76 (356)
T 3ro6_B 1 MKIADIQVRTEHFPLTRPYRIAFRSI----EEIDNLIVEIRTADGLLGLGAASPERHVTGETLEACHAALDHDRLGWLMG 76 (356)
T ss_dssp CBEEEEEEEEEEEEBC--------------CEEEEEEEEEEETTSCEEEEEECCCHHHHCCCHHHHHHHHCGGGCTTTTT
T ss_pred CEEEEEEEEEEEecccCCEEecCeEE----EeeeEEEEEEEECCCCEEEecccCCCCcCcCCHHHHHHHHHHHhHHHhcC
Confidence 79999999999999999999998764 45899999999999999999998865 345666666666654 8899999
Q ss_pred CcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEee
Q 041113 571 AKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALI 650 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~ 650 (983)
+++.+++.++..+ +..+ ...++|++|||+|||||+||.+|+|||+||||.+ ++|++|+++
T Consensus 77 ~~~~~~~~~~~~l-----~~~~-----~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~----------~~v~~~~~~ 136 (356)
T 3ro6_B 77 RDIRTLPRLCREL-----AERL-----PAAPAARAALDMALHDLVAQCLGLPLVEILGRAH----------DSLPTSVTI 136 (356)
T ss_dssp CBGGGHHHHHHHH-----HHHC-----TTCHHHHHHHHHHHHHHHHHHHTSBHHHHTCCCC----------SCEEBCEEE
T ss_pred CCccCHHHHHHHH-----HHhh-----ccchhHHHHHHHHHHHHHHHHcCCcHHHHhCCCC----------CceeeeEEE
Confidence 9998876655321 2221 1257899999999999999999999999999975 569999887
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCc
Q 041113 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQ 730 (983)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~ 730 (983)
. ..+++++++++++++++||++||+|+|. ++++|++++++||+++|+++.|++|+|++|++++|+++++.|+++++.
T Consensus 137 ~-~~~~~~~~~~a~~~~~~G~~~~K~K~G~--~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~ 213 (356)
T 3ro6_B 137 G-IKPVEETLAEAREHLALGFRVLKVKLCG--DEEQDFERLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGIE 213 (356)
T ss_dssp C-SCCHHHHHHHHHHHHHTTCCEEEEECCS--CHHHHHHHHHHHHHHHTTSSEEEEECTTCCCHHHHHHHHHHHHHTTCC
T ss_pred c-CCCHHHHHHHHHHHHHcCCCEEEEEeCC--CHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCC
Confidence 3 5789999999999999999999999997 799999999999999999999999999999999999999999999999
Q ss_pred eeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC--CceEEEEcCCCcCCHHHHHHHHHHHHHcCC
Q 041113 731 YIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP--GIVAIVIKPSVIGGFENAGLIARWAQRHGK 806 (983)
Q Consensus 731 ~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~--~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi 806 (983)
|||||++ +++++++|++++++||++||++++..+ +..+++. ++|++|+|++++||++++++++++|+++|+
T Consensus 214 ~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi 288 (356)
T 3ro6_B 214 FIEQPFPAGRTDWLRALPKAIRRRIAADESLLGPAD-----AFALAAPPAACGIFNIKLMKCGGLAPARRIATIAETAGI 288 (356)
T ss_dssp CEECCSCTTCHHHHHTSCHHHHHTEEESTTCCSHHH-----HHHHHSSSCSCSEEEECHHHHCSHHHHHHHHHHHHHHTC
T ss_pred EEECCCCCCcHHHHHHHHhcCCCCEEeCCcCCCHHH-----HHHHHhcCCcCCEEEEcccccCCHHHHHHHHHHHHHcCC
Confidence 9999998 788899999999999999999998753 6666664 579999999999999999999999999999
Q ss_pred cEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeEE
Q 041113 807 MAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEAS 882 (983)
Q Consensus 807 ~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~ 882 (983)
++++||++||+|++++++|+++++||+.. +.+++..++.+|++.+++.+++ +|++|||||
T Consensus 289 ~~~~~~~~es~i~~aa~~hlaaa~p~~~~---------------~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv- 352 (356)
T 3ro6_B 289 DLMWGCMDESRISIAAALHAALACPATRY---------------LDLDGSFDLARDVAEGGFILEDGRLRVTERPGLGL- 352 (356)
T ss_dssp EEEECCCSCCHHHHHHHHHHHHTCTTEEE---------------ECCCTTTTBSCCSCEESCEEETTEEECCSSSBTCE-
T ss_pred EEEecCCcccHHHHHHHHHHHhcCCCCCe---------------EecccchhhhhccccCCceeECCEEECCCCCeeee-
Confidence 99999999999999999999999996421 1234456778888888888874 999999999
Q ss_pred ecc
Q 041113 883 VAK 885 (983)
Q Consensus 883 ~d~ 885 (983)
+|+
T Consensus 353 ~d~ 355 (356)
T 3ro6_B 353 VYP 355 (356)
T ss_dssp EC-
T ss_pred cCC
Confidence 993
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-60 Score=537.37 Aligned_cols=358 Identities=21% Similarity=0.235 Sum_probs=303.5
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCc--C-cCcccHHHHHHHHHH-HHhHh
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL--E-IHKENLLDAEEQLRF-LLHFM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~--~-~~~~~~~~~~~~l~~-~~~~l 568 (983)
|||++|+++.+++||+.||.++.+++ ..++.++|+|+|++|++||||+.+. + ++.++...+...++. +.|.+
T Consensus 1 MkI~~i~~~~~~lpl~~p~~~s~g~~----~~~~~~~V~v~td~G~~G~GE~~~~~~p~~~~e~~~~~~~~l~~~l~p~l 76 (388)
T 3qld_A 1 MSLQTCVLHRLSLPLKFPMRTAHGHI----REKQAILVQLVDADGIEGWSECVALAEPTYTEECTDTAWVMLVHHLVPRF 76 (388)
T ss_dssp -CEEEEEEEEEEEEEEEEEECSSSEE----EEEEEEEEEEEETTSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTHHHHH
T ss_pred CEEEEEEEEEEecccCCceEccceEE----EeeeEEEEEEEECCCCEEEEecccCCCCccccccHHHHHHHHHHHHHHHH
Confidence 79999999999999999999998764 4589999999999999999999864 2 456777766666655 78999
Q ss_pred c-------cCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCcccccccccc
Q 041113 569 T-------GAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRS 641 (983)
Q Consensus 569 ~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~ 641 (983)
+ |+++.+...++.. +..+ ...++|++|||||||||+||.+|+|||+||||.+
T Consensus 77 ~~~~~~~~G~~~~~~~~~~~~------~~~~-----~g~~~A~said~ALwDl~gk~~g~Pl~~LLGg~r---------- 135 (388)
T 3qld_A 77 ARWLRAASQDQDVDPRTVCEA------LRDV-----RGNRMSVAAIEMAVWDWYAARTGQPLVGLLGGGR---------- 135 (388)
T ss_dssp HHHHTSGGGSSCCCGGGGGGG------GTTC-----CSCHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCC----------
T ss_pred hhhhcccCCCCccCHHHHHHH------HHHc-----cCcHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC----------
Confidence 9 9877665444321 1111 1257899999999999999999999999999953
Q ss_pred ceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHH
Q 041113 642 TSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFG 721 (983)
Q Consensus 642 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~ 721 (983)
++|++|++++...+++++.+++++++++||++||+|+|. ++|+++|++||+++ +++.||+|+|++|++++|++ +
T Consensus 136 ~~v~~~~~~~~~~~~e~~~~~~~~~~~~G~~~~K~Kv~~----~~d~~~v~avR~~~-~~~~l~vDaN~~~~~~~A~~-~ 209 (388)
T 3qld_A 136 DRVEVSATLGMSESLDVLIQSVDAAVEQGFRRVKLKIAP----GRDRAAIKAVRLRY-PDLAIAADANGSYRPEDAPV-L 209 (388)
T ss_dssp SEEEBEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECBT----TBSHHHHHHHHHHC-TTSEEEEECTTCCCGGGHHH-H
T ss_pred CeEEEeEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCc----HHHHHHHHHHHHHC-CCCeEEEECCCCCChHHHHH-H
Confidence 789999988654569999999999999999999999974 57999999999999 89999999999999999997 8
Q ss_pred hhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHH
Q 041113 722 FLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIA 798 (983)
Q Consensus 722 ~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~ 798 (983)
+.|+++++.|||||++ |++++++|++++++|||+||++++..+ +..+++. .+|++|+|++++|||+++++++
T Consensus 210 ~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~-----~~~~~~~~a~d~v~~k~~~~GGit~~~~ia 284 (388)
T 3qld_A 210 RQLDAYDLQFIEQPLPEDDWFDLAKLQASLRTPVCLDESVRSVRE-----LKLTARLGAARVLNVKPGRLGGFGATLRAL 284 (388)
T ss_dssp HHGGGGCCSCEECCSCTTCHHHHHHHHHHCSSCEEESTTCCSHHH-----HHHHHHHTCCSEEEECHHHHTSHHHHHHHH
T ss_pred HHHhhCCCcEEECCCCcccHHHHHHHHHhCCCCEEeCCCCCCHHH-----HHHHHHcCCCCEEEECchhhCCHHHHHHHH
Confidence 9999999999999998 788999999999999999999999753 5666654 4799999999999999999999
Q ss_pred HHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCcc-chhcccccCCCCCc-eeec----
Q 041113 799 RWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLG-TYQWLKEDVTTDPI-SICH---- 872 (983)
Q Consensus 799 ~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~d~~~~p~-~~~~---- 872 (983)
++|+++|++++++|++|++|++++++|+++ ++|. ..+.+++ +..++.+|++.+|+ .+++
T Consensus 285 ~~A~~~gi~~~~~~~~es~i~~aa~~~laa-~~~~--------------~~~~~~~~~~~~~~~d~~~~~~~~~~~G~i~ 349 (388)
T 3qld_A 285 DVAGEAGMAAWVGGMYETGVGRVHGLIAAA-LPLM--------------RYATDLGPSDRYFEQDVLKEPIAFVEPGVIQ 349 (388)
T ss_dssp HHHHHTTCEEEECCCCCCHHHHHHHHHHHT-STTB--------------CSCBSCCCGGGTCSSCSBSSCCCCSBTTEEE
T ss_pred HHHHHCCCeEEecCccchHHHHHHHHHHHc-CCCC--------------CcccccCcchhhHHhhcccCCCceeECCEEE
Confidence 999999999999999999999999999998 7753 1112222 35678889988888 7874
Q ss_pred cCCCCeeeEEecchhhhhhhccccccccccc
Q 041113 873 NSCRGFVEASVAKATHILQNLQINNDVICKT 903 (983)
Q Consensus 873 ~P~~pGlGv~~d~a~~~~~~~~~~~~~i~~~ 903 (983)
+|++|||||++| ++.++++.+....+...
T Consensus 350 ~p~~PGlGv~~d--~~~l~~~~~~~~~~~~~ 378 (388)
T 3qld_A 350 VPQCAGVADWVD--RDAVRRFSTATWSVDLR 378 (388)
T ss_dssp CCCCSSSGGGBC--HHHHHHHEEEEEEEETT
T ss_pred CCCCCcCCceeC--HHHHHHhhcceEEEecc
Confidence 999999999999 88999988776555444
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-61 Score=541.30 Aligned_cols=356 Identities=18% Similarity=0.197 Sum_probs=305.3
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC---cCcccHHHHHHHHHH-HHhHh
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQLRF-LLHFM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~---~~~~~~~~~~~~l~~-~~~~l 568 (983)
|||++|+++.+++||+.||.++.+++ ..++.++|+|+ ++|++||||+.+.+ |+.++.+.+...++. +.|.+
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~----~~~~~~~V~v~-d~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~l 75 (370)
T 1chr_A 1 MKIDAIEAVIVDVPTKRPIQMSITTV----HQQSYVIVRVY-SEGLVGVGEGGSVGGPVWSAECAETIKIIVERYLAPHL 75 (370)
T ss_dssp CCCCCCCEECCCCCCCCCCTTCCSSC----CCCCCEECCBC-SSSCBCCEECCCBTTBTTSSCCHHHHHHHHHHHTHHHH
T ss_pred CEEEEEEEEEEEccCCCCeEccceEE----eeeeEEEEEEE-ECCcEEEEccccCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 69999999999999999999998765 34889999999 99999999998752 456777777777754 88999
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA 648 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~ 648 (983)
+|+++.+++.++..+ ++.+ ..+++|++|||||||||+||.+|+|||+||||.. +++|++|+
T Consensus 76 ~G~d~~~~~~~~~~l-----~~~~-----~g~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~---------r~~v~~~~ 136 (370)
T 1chr_A 76 LGTDAFNVSGALQTM-----ARAV-----TGNASAKAAVEMALLDLKARALGVSIAELLGGPL---------RSAIPIAW 136 (370)
T ss_dssp TTSCTTCHHHHHHHH-----HHHC-----SSCHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCS---------CSEEEBEE
T ss_pred cCCCcCCHHHHHHHH-----HHHh-----cCcHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCC---------CCceeEEE
Confidence 999998876655322 2221 1247899999999999999999999999999986 57899998
Q ss_pred eecCCCCHHHHHHHHHHhhh-cCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccC
Q 041113 649 LIDSNKSPVEVASIATTLVE-EGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727 (983)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~-~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~ 727 (983)
++. ..++++..+++.++++ +||++||+|+|. .++++|++++++||+++|+++.|++|+|++|+.++|+++++.|+++
T Consensus 137 t~~-~~~~~~~~~~~~~~~~~~G~~~~KiKvg~-~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~ 214 (370)
T 1chr_A 137 TLA-SGDTKRDLDSAVEMIERRRHNRFKVKLGF-RSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEAL 214 (370)
T ss_dssp EEC-SSSHHHHHHHHHHHHHTTCCCEEEEECSS-SCSHHHHHHHHHHHHHSSTTCCEEEECTTCCCTTHHHHHTHHHHTT
T ss_pred Eec-CCCcHHHHHHHHHHHHHCCCCEEEEecCC-CCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 874 3466666677777766 899999999997 3789999999999999999999999999999999999999999999
Q ss_pred CCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHc
Q 041113 728 DLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRH 804 (983)
Q Consensus 728 ~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~ 804 (983)
++.|||||++ +++++++|++++++||++||++++.. .+..+++. ++|++|+|++++||++++++++++|+++
T Consensus 215 ~i~~iEqP~~~~~~~~~~~l~~~~~iPia~dE~~~~~~-----~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~ 289 (370)
T 1chr_A 215 GVELIEQPVGRENTQALRRLSDNNRVAIMADESLSTLA-----SAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEAS 289 (370)
T ss_dssp TEEEEECCSCTTCHHHHHHHHHHSCSEEEESSSCCSHH-----HHHHHHTTTSCSEEEECTTTSCSHHHHHHHHHHHHHH
T ss_pred CCCEEECCCCcccHHHHHHHHhhCCCCEEeCCCcCCHH-----HHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHc
Confidence 9999999998 67889999999999999999999875 36666665 4799999999999999999999999999
Q ss_pred CCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeee
Q 041113 805 GKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVE 880 (983)
Q Consensus 805 gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlG 880 (983)
|+++++||+++++|++++++|++++++|+. ..+.+++..++.+|++.+|+.+++ +|++||||
T Consensus 290 g~~~~~~~~~es~i~~aa~~hlaaa~~~~~--------------~~~~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlG 355 (370)
T 1chr_A 290 GIASYGGTMLDSTIGTSVALQLYSTVPSLP--------------FGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHG 355 (370)
T ss_dssp TCEEEECCSCCTTHHHHHHHHHHTTSSCCT--------------TCBCCCTGGGSSCCSBSSCCEEETTEEECCCCSBTS
T ss_pred CCeEEecCCCccHHHHHHHHHHHHhCCCCc--------------cchhcccchhhhhcccCCCceeECCEEECCCCCcCC
Confidence 999999999999999999999999998641 112234456678899888998884 99999999
Q ss_pred EEecchhhhhhhccc
Q 041113 881 ASVAKATHILQNLQI 895 (983)
Q Consensus 881 v~~d~a~~~~~~~~~ 895 (983)
+++| ++.+++++.
T Consensus 356 v~~d--~~~l~~~~~ 368 (370)
T 1chr_A 356 MTLD--EDKVRQYAR 368 (370)
T ss_dssp CCBC--HHHHHHTCS
T ss_pred cccC--HHHHHhhhc
Confidence 9999 888888763
|
| >4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-59 Score=532.28 Aligned_cols=347 Identities=19% Similarity=0.195 Sum_probs=294.9
Q ss_pred eeEeEEEEEEEEeeC-CCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC--cCcccHHHHHHHHHHHHhHhc
Q 041113 493 CKICRMEYSLYRIQL-CAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE--IHKENLLDAEEQLRFLLHFMT 569 (983)
Q Consensus 493 mkI~~v~~~~~~~pl-~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~--~~~~~~~~~~~~l~~~~~~l~ 569 (983)
|||++|+++.+++|+ +.||.++.++. +.++.++|||+||+|++||||++|.. +..+....+...++.+.+.++
T Consensus 10 MKI~~I~~~~~~lPl~~~p~~~a~g~~----~~~~~~lV~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 85 (376)
T 4h2h_A 10 LKIAEIQLFQHDLPVVNGPYRIASGDV----WSLTTTIVKIIAEDGTIGWGETCPVGPTYAEAHAGGALAALEVLASGLA 85 (376)
T ss_dssp CBEEEEEEEEEEEEBTTCCBCCTTCCB----SEEEEEEEEEEETTSCEEEEEECCSSSSSSSCCHHHHHHHHHHHHHTTT
T ss_pred eEEeEEEEEEEecccCCCCeEecCEEE----EEEEEEEEEEEECCCCEEEEeecCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 699999999999998 56999998765 45999999999999999999998764 333444556667788999999
Q ss_pred cCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEe
Q 041113 570 GAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICAL 649 (983)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~ 649 (983)
|+++.++.... .+.... ..+++|++|||+|||||+||.+|+|||+||||.. +++|++|++
T Consensus 86 g~d~~~~~~~~------~~~~~~-----~~~~~A~said~ALwDl~gK~~g~Pl~~LLGG~~---------r~~v~~y~s 145 (376)
T 4h2h_A 86 GAEALPLPLHT------RMDSLL-----CGHNYAKSALDIAVHDLWGKRLGVPVHELLGGAL---------TDSVSSYYS 145 (376)
T ss_dssp TCBSSHHHHHH------HHHHHC-----SCCHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCS---------CSEEECEEE
T ss_pred CCccCcHHHHH------HHHHhh-----cccHHHHHHHHHhhhHHHHHhcCCCceecCCCCc---------CCceeEeee
Confidence 99887542111 111111 1246899999999999999999999999999986 688999999
Q ss_pred ecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc-CCCcEEEEEcCCCCCHHHHHHHHhhcccCC
Q 041113 650 IDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV-GHRIELRVDANRNWTYQEALEFGFLIKDCD 728 (983)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~-g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~ 728 (983)
+ +..+++++.+++++++++||++||+|+|. .++++|+++++++|+++ |+++.||+|+|++||+++|+++++.|++++
T Consensus 146 ~-~~~~~~~~~~~a~~~~~~G~~~~KiKvg~-~~~~~di~~v~~vr~a~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~ 223 (376)
T 4h2h_A 146 L-GVMEPDEAARQALEKQREGYSRLQVKLGA-RPIEIDIEAIRKVWEAVRGTGIALAADGNRGWTTRDALRFSRECPDIP 223 (376)
T ss_dssp E-CSCCHHHHHHHHHHHHHHTCSEEEEECCS-SCHHHHHHHHHHHHHHHTTSCCEEEEECTTCCCHHHHHHHHHHCTTSC
T ss_pred c-ccCCHHHHHHHHHHHHhcCceEEEEecCC-CCHHHHHHHHHHHHhhccCCeeEEEEeeccCCCHHHHHHHHHHHhhcc
Confidence 8 45789999999999999999999999997 36799999999999998 899999999999999999999999999998
Q ss_pred CceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCc
Q 041113 729 LQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKM 807 (983)
Q Consensus 729 i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~ 807 (983)
+ |||||+++++++++|++.+++||++||++++..+ +..+++.+ +|++|+|++++||++++++++++|+++|++
T Consensus 224 ~-~iEeP~~~~~~~~~l~~~~~~pia~dE~~~~~~~-----~~~~~~~~~~d~v~~d~~~~GGit~~~~ia~~a~~~gi~ 297 (376)
T 4h2h_A 224 F-VMEQPCNSFEDLEAIRPLCHHALYMDEDGTSLNT-----VITAAATSLVDGFGMKVSRIGGLQHMRAFRDFCAARNLP 297 (376)
T ss_dssp E-EEESCSSSHHHHHHHGGGCCSCEEESTTCCSHHH-----HHHHHHTTCCSEECCBHHHHTSHHHHHHHHHHHHHHTCC
T ss_pred c-cccCCcchhhhHhhhhhcccCccccCcccCCHHH-----HHHHHHhhccCccccccceeCCcHHHHHHHHHHHHcCCC
Confidence 7 9999998789999999999999999999999763 55666554 699999999999999999999999999999
Q ss_pred EEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeEEe
Q 041113 808 AVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEASV 883 (983)
Q Consensus 808 ~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~ 883 (983)
+++||+++++|+.++++|++++.++. .. +. ..+....++.+++..+++.+++ +|++|||||++
T Consensus 298 ~~~~~~~~~~i~~aa~~hlaa~~~~~--~~----~~-------~~~~~~~~~~~~~~~~~~~~~~G~i~vp~~PGLGvel 364 (376)
T 4h2h_A 298 HTCDDAWGGDIVSAACTHIASTVLPR--LM----EG-------AWLAQPYVAEHYDAENGVRIEGGRIRVPQGPGLGLTI 364 (376)
T ss_dssp EECBCSSCSHHHHHHHHHHHTTSCGG--GE----EE-------CCCSGGGBSCCSSTTTCCCEETTEEECCCSSBTSCCC
T ss_pred EEeCCCCccHHHHHHHHHHHHhCCcc--cc----cc-------ccccCchhhhhhccCCCCeEECCEEECCCCCCCCcEE
Confidence 99999999999999999999987632 11 01 1123344556677788998884 99999999999
Q ss_pred c
Q 041113 884 A 884 (983)
Q Consensus 884 d 884 (983)
|
T Consensus 365 d 365 (376)
T 4h2h_A 365 D 365 (376)
T ss_dssp C
T ss_pred C
Confidence 9
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-59 Score=527.71 Aligned_cols=339 Identities=20% Similarity=0.244 Sum_probs=299.1
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHHHHH---hHh
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLRFLL---HFM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~~~~---~~l 568 (983)
|||++|+++.+++||+.||.++.++. ..++.++|+|+|++|++||||+.+.+ +++++...+...++.+. |.|
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~a~~~~----~~~~~~~V~v~td~G~~G~GE~~~~~~~~ge~~~~~~~~i~~l~~~~p~l 76 (354)
T 3jva_A 1 MKIKQVHVRASKIKLKETFTIALGTI----ESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGL 76 (354)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEEETTSCEEEEEECCCTTTTCCCHHHHHHHHHHHHTTSTTC
T ss_pred CEEEEEEEEEEEEeccCCEEecCcEE----eeceEEEEEEEECCCCEEEEeecCCCCcCCCCHHHHHHHHHHHhhcCccc
Confidence 79999999999999999999998764 45899999999999999999998875 35677777777777888 999
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA 648 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~ 648 (983)
+|+++.+++.++. .+. ..+++|++|||+|||||+||.+|+|||+||||. +++|++|+
T Consensus 77 ~G~d~~~~~~~~~---------~l~----~~~~~A~~aid~AlwDl~gk~~g~Pl~~llGg~----------~~~v~~~~ 133 (354)
T 3jva_A 77 NPFNIEKIHEVMD---------KIS----AFAPAAKAAIDIACYDLMGQKAQLPLYQLLGGY----------DNQVITDI 133 (354)
T ss_dssp CTTCHHHHHHHHH---------HHC----SSCHHHHHHHHHHHHHHHHHHHTSBHHHHTTCS----------CSEEECCE
T ss_pred cCCCcccHHHHHH---------HHh----cccHHHHHHHHHHHHHHHHHHcCCcHHHHhhcc----------CCeeeeeE
Confidence 9999887655442 221 125789999999999999999999999999994 36788887
Q ss_pred eecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCC
Q 041113 649 LIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD 728 (983)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~ 728 (983)
++ +..+++++.+++++++++||++||+|+|. ++++|++++++||+++|+++.|++|+|++|++++|+++++.|++++
T Consensus 134 ~~-~~~~~~~~~~~a~~~~~~G~~~~K~K~g~--~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~~ 210 (354)
T 3jva_A 134 TL-GIDEPNVMAQKAVEKVKLGFDTLKIKVGT--GIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQ 210 (354)
T ss_dssp EE-CSCCHHHHHHHHHHHHHTTCSEEEEECCS--CHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSC
T ss_pred Ee-CCCCHHHHHHHHHHHHHhCCCeEEEEeCC--CHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 76 45789999999999999999999999997 6799999999999999999999999999999999999999999999
Q ss_pred CceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHcC
Q 041113 729 LQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRHG 805 (983)
Q Consensus 729 i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~g 805 (983)
+.|||||++ +++++++|++++++||++||++++..+ +..+++ ..+|++++|++++||++++++++++|+++|
T Consensus 211 i~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~l~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~g 285 (354)
T 3jva_A 211 IELVEQPVKRRDLEGLKYVTSQVNTTIMADESCFDAQD-----ALELVKKGTVDVINIKLMKCGGIHEALKINQICETAG 285 (354)
T ss_dssp EEEEECCSCTTCHHHHHHHHHHCSSEEEESTTCCSHHH-----HHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTT
T ss_pred CCEEECCCChhhHHHHHHHHHhCCCCEEEcCCcCCHHH-----HHHHHHcCCCCEEEECchhcCCHHHHHHHHHHHHHcC
Confidence 999999998 788999999999999999999998753 555554 457999999999999999999999999999
Q ss_pred CcEEeCCCC-chHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCC-Cee
Q 041113 806 KMAVVSAAF-ESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCR-GFV 879 (983)
Q Consensus 806 i~~~~~~~~-es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~-pGl 879 (983)
+++++||++ ||++++++++||++++||+.. +.++++.++.+|++.+++.+++ +|++ |||
T Consensus 286 i~~~~~~~~~es~i~~~a~~hlaaa~~~~~~---------------~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~~PGl 350 (354)
T 3jva_A 286 IECMIGCMAEETTIGITAAAHLAAAQKNITR---------------ADLDATFGLETAPVTGGVSLEAKPLLELGEAAGL 350 (354)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHCTTEEE---------------ECCCGGGGBSSCSSSBSSCSSCCSEEECCSSSBT
T ss_pred CeEEecCCCcccHHHHHHHHHHHhcCCCCCc---------------ccccchhhhhhccccCCceEECCEEEcCCCCCCC
Confidence 999999999 999999999999999996421 2345567888899888888874 9999 999
Q ss_pred eE
Q 041113 880 EA 881 (983)
Q Consensus 880 Gv 881 (983)
||
T Consensus 351 Gv 352 (354)
T 3jva_A 351 GI 352 (354)
T ss_dssp CB
T ss_pred CC
Confidence 98
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-59 Score=529.90 Aligned_cols=363 Identities=17% Similarity=0.174 Sum_probs=304.8
Q ss_pred eeEeEEEEEEEEeeCCC--CCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhcc
Q 041113 493 CKICRMEYSLYRIQLCA--PPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTG 570 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~--p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g 570 (983)
|||++|+++.+++||+. ||.++.+++ ..++.++|||+|++|++||||+.+ ++ ++.+.+...++.+.|.|+|
T Consensus 3 MkI~~i~~~~~~~pl~~~~p~~~a~~~~----~~~~~~~V~v~td~G~~G~GE~~~-~~--~~~~~~~~~i~~l~p~l~G 75 (389)
T 3ozy_A 3 LKITEVKAHALSTPIPERMRVESGAGLK----LNRQMILVEVRTDEGVTGVGSPSG-PY--DLAVLKRAIEDVIGPQLIG 75 (389)
T ss_dssp CCEEEEEEEEEEEECCGGGCCEETTEEB----CEEEEEEEEEEETTSCCEEECCCS-SS--CHHHHHHHHHHTTHHHHTT
T ss_pred CEEEEEEEEEEeccCcCCCccccccccc----ccceEEEEEEEECCCCEEEEecCC-CC--CchHHHHHHHHHHHHHHcC
Confidence 89999999999999999 999998764 348999999999999999999984 22 1223344556779999999
Q ss_pred CcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccce-eEEEEe
Q 041113 571 AKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTS-IKICAL 649 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~-i~~~~~ 649 (983)
+++.+++.++..+.....+...+ ..+..++|++|||+|||||+||.+|+|||+||||.. +++ ||+|++
T Consensus 76 ~d~~~~~~~~~~l~~~~~~~~~g--~~~~~~~A~said~AlwDl~gK~~g~Pl~~LLGg~~---------r~~~v~~y~~ 144 (389)
T 3ozy_A 76 EDPANINYLWHKVFHGEVSRNLG--HRSVGIAAMSGVDIALWDLKGRAMNQPIYQLLGGKF---------HTRGVRAYAS 144 (389)
T ss_dssp SCTTCHHHHHHHHHHHTHHHHHC--SBSHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTSCS---------STTCEEEEEE
T ss_pred CCcchHHHHHHHHHhhhhhhccC--CchHHHHHHHHHHHHHHHHhHhHcCCCHHHHhCCcc---------cCCceeeEEe
Confidence 99988766664332210011122 234578999999999999999999999999999985 478 999998
Q ss_pred e-cCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCC
Q 041113 650 I-DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD 728 (983)
Q Consensus 650 ~-~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~ 728 (983)
+ ....+++++.+++++++++||++||+|+|. ++++|+++|++||+++|+++.|++|+|++|+.++|+++++.|++++
T Consensus 145 ~~~~~~~~e~~~~~a~~~~~~G~~~iKiKvG~--~~~~d~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~ 222 (389)
T 3ozy_A 145 SIYWDLTPDQAADELAGWVEQGFTAAKLKVGR--APRKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAG 222 (389)
T ss_dssp EECSSCCHHHHHHHHHHHHHTTCSEEEEECCS--CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCCEEeeccCC--CHHHHHHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcC
Confidence 7 326789999999999999999999999997 7999999999999999999999999999999999999999999999
Q ss_pred CceeecCCC--ChHHHHHHH-hhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHc
Q 041113 729 LQYIEEPVQ--NEEDIIKYC-EESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRH 804 (983)
Q Consensus 729 i~~iEeP~~--~~~~~~~l~-~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~ 804 (983)
+.|||||++ +++++++|+ +++++||++||++.+..+ +..+++ ..+|++++|++++||++++++++++|+++
T Consensus 223 i~~iEqP~~~~d~~~~~~l~~~~~~iPIa~dE~i~~~~~-----~~~~i~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~ 297 (389)
T 3ozy_A 223 CYWFEEPLSIDDIEGHRILRAQGTPVRIATGENLYTRNA-----FNDYIRNDAIDVLQADASRAGGITEALAISASAASA 297 (389)
T ss_dssp CSEEESCSCTTCHHHHHHHHTTCCSSEEEECTTCCHHHH-----HHHHHHTTCCSEECCCTTTSSCHHHHHHHHHHHHHT
T ss_pred CCEEECCCCcccHHHHHHHHhcCCCCCEEeCCCCCCHHH-----HHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHc
Confidence 999999998 788999999 999999999999998753 556665 45799999999999999999999999999
Q ss_pred CCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeee
Q 041113 805 GKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVE 880 (983)
Q Consensus 805 gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlG 880 (983)
|+++++| +++++|++++++||+++++|.. +.+++ ... ..|.+|++.+|+.+++ +|++||||
T Consensus 298 gi~~~~h-~~~~~i~~aa~~hlaaa~~~~~-----~~e~d--------~~~-~~~~~~~~~~~~~~~~G~i~~p~~PGlG 362 (389)
T 3ozy_A 298 HLAWNPH-TFNDIITVAANLHLVAASPHPA-----MFEWD--------ITH-NDLMTRLASYDLKLENGLVQPPQGPGLG 362 (389)
T ss_dssp TCEECCC-CTTSHHHHHHHHHHHHHCCSCC-----CEEEE--------CSS-CGGGTTSBSCCCCCBTTEECCCCSSBTC
T ss_pred CCEEEec-CCCcHHHHHHHHHHHHhCCCCe-----eEEec--------Ccc-chhhHhhccCCceeECCEEECCCCCcCC
Confidence 9998766 5799999999999999999641 11121 111 2345677788888874 99999999
Q ss_pred EEecchhhhhhhccccc
Q 041113 881 ASVAKATHILQNLQINN 897 (983)
Q Consensus 881 v~~d~a~~~~~~~~~~~ 897 (983)
|++| ++.++++....
T Consensus 363 v~~d--~~~l~~~~~~~ 377 (389)
T 3ozy_A 363 FEID--WDFVAAHAWKG 377 (389)
T ss_dssp SCBC--HHHHHHTBCCS
T ss_pred cccC--HHHHHhccCCC
Confidence 9999 88999988664
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-60 Score=535.64 Aligned_cols=357 Identities=22% Similarity=0.213 Sum_probs=302.4
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC---cCcccHHHHHHHHHH-HHhHh
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQLRF-LLHFM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~---~~~~~~~~~~~~l~~-~~~~l 568 (983)
|||++|+++.+++||+.||.++.+.+ ..++.++|+|+| +|++||||+.+.+ +++++...+...++. +.|.|
T Consensus 7 MkI~~i~~~~~~~pl~~p~~~s~g~~----~~~~~~lV~v~t-~G~~G~GE~~~~~~p~~~~et~~~~~~~i~~~l~p~l 81 (400)
T 3mwc_A 7 ARIDGVSLYEIVIPMKIPFQISSGTC----YTRRSLVVEIRE-GDLFGYGESAPFEEPFYLGETLETTKVILKNHLLPMI 81 (400)
T ss_dssp CCCCEEEEEEEEEECSSCCCBTTBCC----CEEEEEEEEEEE-TTEEEEEEECCBSSTTSTTCBHHHHHHHHHHTHHHHH
T ss_pred cEEEEEEEEEEeccccCceEccCceE----eeeeEEEEEEEE-CCeEEEEecccCCCCccccCcHHHHHHHHHHHHHHHH
Confidence 79999999999999999999998765 458999999999 9999999998763 567787777777764 88999
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCC------------CCccccc
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYP------------LTEIDEE 636 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg------------~~~~~~~ 636 (983)
+|+++.+++.++.. +... + ...++|++|||+|||||+||.+|+|||+|||| ..
T Consensus 82 iG~d~~~~e~~~~~-----l~~~--~---~g~~~A~said~ALwDl~gk~~g~Pl~~LLGG~~~~~~~~~~~~~~----- 146 (400)
T 3mwc_A 82 LGKEPLSIEEFNHL-----IKNG--I---RGNHFARCGVENAYWDLIAKKNKISLKAMIEKKMKNLGVKQEYLAS----- 146 (400)
T ss_dssp TTCCCSSHHHHHHH-----HHHS--C---CSCHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHTTCCGGGGCB-----
T ss_pred cCCCCCCHHHHHHH-----HHHH--h---cCCHHHHHHHHHHHHHHHHHHcCCcHHHHhCCcccccccccccccC-----
Confidence 99998876655432 1111 1 12467999999999999999999999999996 33
Q ss_pred cccccceeEEEEeecCCCC--HHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 041113 637 ISKRSTSIKICALIDSNKS--PVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714 (983)
Q Consensus 637 ~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~ 714 (983)
+++|++|++++...+ ++++++++++++++||++||+|++ +++|+++|++||+++|+++.|++|+|++|+.
T Consensus 147 ----r~~v~~~~s~g~~~~~~~e~~~~~a~~~~~~G~~~iKlKv~----~~~d~~~v~avR~a~G~~~~L~vDaN~~w~~ 218 (400)
T 3mwc_A 147 ----NNYIESGAALGIPEDGRIETLIHQVEESLQEGYRRIKIKIK----PGWDVEPLQETRRAVGDHFPLWTDANSSFEL 218 (400)
T ss_dssp ----CSEEEBCEEECCCTTCCHHHHHHHHHHHHHHTCSCEEEECB----TTBSHHHHHHHHHHHCTTSCEEEECTTCCCG
T ss_pred ----CCeEEeeEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEEeC----cchHHHHHHHHHHhcCCCCEEEEeCCCCCCH
Confidence 578999998753445 999999999999999999999995 4679999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCH
Q 041113 715 QEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGF 791 (983)
Q Consensus 715 ~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl 791 (983)
++ +++++.|+++++.|||||++ +++++++|++++++||++||++++..+ +..+++. .+|++|+|++++||+
T Consensus 219 ~~-~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~~~~~~~d~v~~k~~~~GGi 292 (400)
T 3mwc_A 219 DQ-WETFKAMDAAKCLFHEQPLHYEALLDLKELGERIETPICLDESLISSRV-----AEFVAKLGISNIWNIKIQRVGGL 292 (400)
T ss_dssp GG-HHHHHHHGGGCCSCEESCSCTTCHHHHHHHHHHSSSCEEESTTCCSHHH-----HHHHHHTTCCSEEEECHHHHTSH
T ss_pred HH-HHHHHHHHhcCCCEEeCCCChhhHHHHHHHHhhCCCCEEEeCCcCCHHH-----HHHHHhcCCCCEEEEcchhhCCH
Confidence 99 99999999999999999998 788999999999999999999999753 6666654 479999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccc-hhcccc--cCCCCCc
Q 041113 792 ENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGT-YQWLKE--DVTTDPI 868 (983)
Q Consensus 792 ~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~--d~~~~p~ 868 (983)
+++++++++|+++|+++++++|+|++|++++++|||+ ++|.. ....++. ..||.+ |++. +
T Consensus 293 t~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hlaa-~~~~~--------------~~~d~~~~~~~~~~~~d~~~--~ 355 (400)
T 3mwc_A 293 LEAIKIYKIATDNGIKLWGGTMPESGLGARFLISLAS-FRGFV--------------FPADVAASEKWYGKGNDLVE--N 355 (400)
T ss_dssp HHHHHHHHHHHHTTCEEEECCSCCCHHHHHHHHHHTT-BTTBC--------------SCBCCCCHHHHHCTTTSSSC--C
T ss_pred HHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHHHc-CCCCc--------------ceeccCchhhhhhcccCeeE--E
Confidence 9999999999999999999999999999999999988 87531 1112222 346676 8776 6
Q ss_pred eeec----cCCCCeeeEEecchhhhhhhcccccccccc
Q 041113 869 SICH----NSCRGFVEASVAKATHILQNLQINNDVICK 902 (983)
Q Consensus 869 ~~~~----~P~~pGlGv~~d~a~~~~~~~~~~~~~i~~ 902 (983)
.+++ +|++|||||++| ++.++++.++...+.+
T Consensus 356 ~~~~G~i~~p~~PGlGve~d--~~~l~~~~~~~~~~~~ 391 (400)
T 3mwc_A 356 TMTDGKIYVPDEPGASFDMT--LSHLEALGKKIWESQR 391 (400)
T ss_dssp CEETTEEECCCSBTTTTTCC--HHHHHHHEEEEEEEC-
T ss_pred EEECCEEECCCCCCcCcccC--HHHHHhhccccEEecc
Confidence 6663 999999999999 8888888876654433
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-58 Score=524.55 Aligned_cols=350 Identities=18% Similarity=0.216 Sum_probs=299.8
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCc---C-cCcccHHHHHHHHHHHHhHh
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL---E-IHKENLLDAEEQLRFLLHFM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~---~-~~~~~~~~~~~~l~~~~~~l 568 (983)
|||++|+++.+++|++.||.+ +.++|||+|++|++||||+.+. + +..++. ...+.+.|.|
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~------------~~~~V~v~td~G~~G~GE~~~~~~~p~~~~e~~----~i~~~l~p~l 64 (391)
T 3gd6_A 1 MKITDLELHAVGIPRHTGFVN------------KHVIVKIHTDEGLTGIGEMSDFSHLPLYSVDLH----DLKQGLLSIL 64 (391)
T ss_dssp CCEEEEEEEEEEEEBTTSCEE------------EEEEEEEEETTSCEEEEEECCCSSSSSCCCCHH----HHHHHHHHHH
T ss_pred CEEEEEEEEEEecccCCCccc------------ceEEEEEEECCCCEEEeccccccCCCccchhHH----HHHHHHHHHh
Confidence 799999999999999998743 5789999999999999999876 3 345554 2224688999
Q ss_pred ccCcccccccccccCchhhhhhhcC--CCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLG--IPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKI 646 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~ 646 (983)
+|+++.+++.++..+. +.+. .......++|++|||||||||+||.+|+|||+||||.. +++|++
T Consensus 65 iG~d~~~~~~~~~~l~-----~~~~~~~~~~~g~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~---------r~~v~~ 130 (391)
T 3gd6_A 65 LGQNPFDLMKINKELT-----DNFPETMYYYEKGSFIRNGIDNALHDLCAKYLDISVSDFLGGRV---------KEKIKV 130 (391)
T ss_dssp TTCCTTCHHHHHHHHH-----HHSCCCSCTTCHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCS---------CSEEEB
T ss_pred CCCCccCHHHHHHHHH-----HHhhhcccccCcchHHHHHHHHHHHHHHhcccCCcHHHHhCCCc---------CCeEEe
Confidence 9999988766654321 1111 00112367899999999999999999999999999975 578999
Q ss_pred EEeecC---CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEE-EEcCCCCCHHHHHHHHh
Q 041113 647 CALIDS---NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELR-VDANRNWTYQEALEFGF 722 (983)
Q Consensus 647 ~~~~~~---~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~-vDaN~~~~~~~a~~~~~ 722 (983)
|+++.. ..+++++++++++++++||++||+|+|. ++++|+++|++||+++|+++.|+ +|+|++|++++|+++++
T Consensus 131 y~t~~~~~~~~~~e~~~~~a~~~~~~G~~~~KiKvG~--~~~~d~~~v~avR~a~g~~~~l~~vDan~~~~~~~A~~~~~ 208 (391)
T 3gd6_A 131 CYPIFRHRFSEEVESNLDVVRQKLEQGFDVFRLYVGK--NLDADEEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIK 208 (391)
T ss_dssp CEEECCCSSTTHHHHHHHHHHHHHHTTCCEEEEECSS--CHHHHHHHHHHHHHHHGGGCEEEEEECTTCSCHHHHHHHHH
T ss_pred eEEecccccCCCHHHHHHHHHHHHHcCCCEEEEeeCC--CHHHHHHHHHHHHHHcCCCCcEEEecCCCCcCHHHHHHHHH
Confidence 998741 5689999999999999999999999997 79999999999999999999999 99999999999999999
Q ss_pred hcccCCC--ceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHH
Q 041113 723 LIKDCDL--QYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLI 797 (983)
Q Consensus 723 ~l~~~~i--~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~ 797 (983)
.|+++++ .|||||++ +++++++|++++++|| ||++.+..+ +..+++ ..+|++|+|++++||+++++++
T Consensus 209 ~l~~~~i~~~~iEqP~~~~d~~~~~~l~~~~~iPI--dE~~~~~~~-----~~~~~~~~~~d~v~~k~~~~GGit~~~~i 281 (391)
T 3gd6_A 209 RLTKYDLGLEMIESPAPRNDFDGLYQLRLKTDYPI--SEHVWSFKQ-----QQEMIKKDAIDIFNISPVFIGGLTSAKKA 281 (391)
T ss_dssp HHTTCCSSCCEEECCSCTTCHHHHHHHHHHCSSCE--EEECCCHHH-----HHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred HHHhcCCCcceecCCCChhhHHHHHHHHHHcCCCc--CCCCCCHHH-----HHHHHHcCCCCEEEECchhcCCHHHHHHH
Confidence 9999999 99999998 7889999999999999 999998753 555554 4579999999999999999999
Q ss_pred HHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----c
Q 041113 798 ARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----N 873 (983)
Q Consensus 798 ~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~ 873 (983)
+++|+++|+++++|||+|++|++++++||+++++|+ ..++.+++..++.+|++.+|+.+++ +
T Consensus 282 a~~A~~~gi~~~~~~~~es~i~~aa~~hlaaa~~~~--------------~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~ 347 (391)
T 3gd6_A 282 AYAAEVASKDVVLGTTQELSVGTAAMAHLGCSLTNI--------------NHTSDPTGPELYVGDVVKNRVTYKDGYLYA 347 (391)
T ss_dssp HHHHHHTTCEEEECCCCCCHHHHHHHHHHHTTCSSC--------------CSCBCCCGGGGBSCCSBSSCCCEETTEEEC
T ss_pred HHHHHHcCCEEEecCCCccHHHHHHHHHHHHhCCCC--------------CccccccchhhhhhccccCCceeECCEEEe
Confidence 999999999999999999999999999999999864 1123345566788899888998884 9
Q ss_pred CC--CCeeeEEecchhhhhhhccccc
Q 041113 874 SC--RGFVEASVAKATHILQNLQINN 897 (983)
Q Consensus 874 P~--~pGlGv~~d~a~~~~~~~~~~~ 897 (983)
|+ +|||||++| ++.++++.+..
T Consensus 348 p~~~~PGlGv~~d--~~~l~~~~~~~ 371 (391)
T 3gd6_A 348 PDRSVKGLGIELD--ESLLAKYQVPD 371 (391)
T ss_dssp CCTTSSBTSCCBC--HHHHHHTBCSC
T ss_pred CCCCCCCCCcccC--HHHHHhccccc
Confidence 99 999999999 88899988764
|
| >4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-59 Score=528.85 Aligned_cols=358 Identities=15% Similarity=0.118 Sum_probs=280.2
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHH-HHHHhHhcc
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQL-RFLLHFMTG 570 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l-~~~~~~l~g 570 (983)
.|||++|+++.+++||+.||.++.+++ ..++.++|||+||+|++||||+.+.. ++...+...+ +.++|.|+|
T Consensus 19 ~MkIt~Ie~~~~~~Pl~~p~~~s~g~~----~~~~~vlV~i~td~G~~G~Ge~~~~~---~~~~~~~~~i~~~lap~LiG 91 (388)
T 4h83_A 19 GLTITRIETIPMVAPLAREFRGSHYHM----THRATIVTRVHTDAGIIGEAYTGDEH---ETMFDIDRIIHEELAPTLIG 91 (388)
T ss_dssp -CBEEEEEEEEEEEEC----------C----CEEEEEEEEEEETTSCEEEEEECCCC---TTHHHHHHHHHHTTHHHHTT
T ss_pred CCEEEEEEEEEEEeeccCCEECCCEEE----EEEEEEEEEEEECCCCEEEEEecCCc---ccHHHHHHHHHHHHHHHHcC
Confidence 369999999999999999999999865 45999999999999999999997653 3333344444 458899999
Q ss_pred CcccccccccccCchhhhhhhcC-CCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEe
Q 041113 571 AKISYFLPLLKGSFSSWIWSTLG-IPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICAL 649 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~ 649 (983)
+++.+++.++..++.. ... ........+|++|||+|||||+||.+|+|||+||||.+ +++++|++
T Consensus 92 ~dp~~ie~l~~~~~~~----~~~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGg~~----------~~~~~y~~ 157 (388)
T 4h83_A 92 QDAMAIERLWDSGYKV----TFDILRDRRLGLVALAAVNTAIWDAVGKALKMPLWKLWGGYR----------NELPMIAI 157 (388)
T ss_dssp SBTTCHHHHHHHHGGG----GCCTTSCHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTCSC----------SEEEEEEE
T ss_pred CChhHHHHHHHHHHhh----hhhhccCCchhHHHHHHHHHHHHHHHHHHcCCChhhhcCCCc----------CceEEEee
Confidence 9998877666432211 111 11223467899999999999999999999999999975 67888887
Q ss_pred ecC-CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCC
Q 041113 650 IDS-NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD 728 (983)
Q Consensus 650 ~~~-~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~ 728 (983)
... ..+++++.++++++++.||++||+|+|. .++++|+++|+++|+++|+++.||||+|++||+++|+++++.|++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~G~~~~Kikvg~-~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~ 236 (388)
T 4h83_A 158 GGYYGEPLGSIADEMHNYQELGLAGVKFKVGG-LSAAEDAARITAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADLN 236 (388)
T ss_dssp ECCTTCTTCSHHHHHHHHHHHTBSEEEEECSS-SCHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHTTTSC
T ss_pred ccccCCCHHHHHHHHHHHHHcCCceEeecCCC-CCHHHHHHHHHHHHHhcCCCeEEEEecCcCCCHHHHHHHHHHhhhcC
Confidence 533 3456788899999999999999999976 48999999999999999999999999999999999999999999999
Q ss_pred CceeecCCC---ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHc
Q 041113 729 LQYIEEPVQ---NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRH 804 (983)
Q Consensus 729 i~~iEeP~~---~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~ 804 (983)
+.|||||++ +.+.+++|++++++|||+||++++..+ +..+++. .+|++|+|++++||||++++++++|+++
T Consensus 237 ~~~iEeP~~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~-----~~~~i~~~a~d~i~~d~~~~GGit~~~kia~~A~~~ 311 (388)
T 4h83_A 237 IRWFEEPVEWHNDKRSMRDVRYQGSVPVCAGQTEFSASG-----CRDLMETGAIDVCNFDSSWSGGPTAWLRTAAIATSY 311 (388)
T ss_dssp CCCEESCBCSTTHHHHHHHHHHHSSSCEEECTTCSSHHH-----HHHHHHHTCCSEECCCGGGTTCHHHHHHHHHHHHHT
T ss_pred cceeecCcccccchHHHHHHHhhcCCCccCCccccChHh-----HHHHHHcCCCCeEeecceeCCCHHHHHHHHHHHHHC
Confidence 999999996 356789999999999999999999764 6666654 4799999999999999999999999999
Q ss_pred CCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeee
Q 041113 805 GKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVE 880 (983)
Q Consensus 805 gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlG 880 (983)
|+++ +++.++ ++++|++++++|.. . .+. + ..+ ...+..|++.+++.+++ +|++||||
T Consensus 312 gv~v--~~h~~~----~~~~h~~aa~~~~~--~---~e~-~------~~~-~~~~~~~~~~~~~~~~~G~i~~p~~PGLG 372 (388)
T 4h83_A 312 DVQM--GHHEEP----QVSTHLLASQPHGT--I---AEC-F------HPD-RDPFWWNMITNRPKLNNGTLTLSDRPGLG 372 (388)
T ss_dssp TCEE--CCCSCH----HHHHHHHHHSTTBC--C---EEE-E------CTT-TCHHHHHSBTTCCCCBTBEEECCSCSBTC
T ss_pred CCEE--EecCHH----HHHHHHHHHhhcCc--c---eee-c------Ccc-cchhhhhccCCCCeeECCEEECCCCCCCC
Confidence 9974 333454 45689999998642 1 111 0 011 12234466677888874 99999999
Q ss_pred EEecchhhhhhhccccc
Q 041113 881 ASVAKATHILQNLQINN 897 (983)
Q Consensus 881 v~~d~a~~~~~~~~~~~ 897 (983)
|++| ++.+++|+++.
T Consensus 373 ve~d--~d~l~~y~V~~ 387 (388)
T 4h83_A 373 WDLN--WDYIDQYRVSK 387 (388)
T ss_dssp CCBC--HHHHHHHBC--
T ss_pred eeeC--HHHHHhccCCC
Confidence 9999 99999999875
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-58 Score=523.55 Aligned_cols=353 Identities=18% Similarity=0.231 Sum_probs=290.7
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccC
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGA 571 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~ 571 (983)
+|||++|+++.+++| ..|+.++.+.+. .....++|+|+||+|++||||+... + .+...++.+.|.|+|+
T Consensus 22 ~mkI~~i~~~~v~~P-~~~~~~~~g~~~---~~~~~~~V~v~td~G~~G~GE~~g~----~---~v~~~i~~l~p~LiG~ 90 (441)
T 3vc5_A 22 SMLIREVRVTPVAFR-DPPLLNAAGVHQ---PWALRTIVEVVTDEGITGLGETYGD----L---AHLEQVRAAAARLPGL 90 (441)
T ss_dssp -CBEEEEEEEEEEEE-CCCBEETTEECC---SEEEEEEEEEEETTCCEEEEEEECC----H---HHHHHHHHHHHTCTTS
T ss_pred CcEEEEEEEEEEecC-CcccccccCccc---cceeEEEEEEEECCCCEEEEeCCCh----H---HHHHHHHHHHHHhCCC
Confidence 479999999999999 889988887642 1256799999999999999998632 2 2345567899999999
Q ss_pred cccccccccccCchhhhhhhcCCC-------CCc------chhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccc
Q 041113 572 KISYFLPLLKGSFSSWIWSTLGIP-------ACE------IFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEIS 638 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~------~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~ 638 (983)
++.+++.++..+. +.+... ..+ ...+|++|||+|||||+||.+|+|||+||||..
T Consensus 91 d~~~~e~i~~~l~-----~~~~~~~~~~~~g~~G~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~------- 158 (441)
T 3vc5_A 91 DVYALHRIYRRVA-----DVVGANIVTDMHGLTGSSSRVKTVDRVFAAFEVACLDIQGKAAGRPVADLLGGKV------- 158 (441)
T ss_dssp BTTCHHHHHHHHH-----HHHTTCCCCCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCS-------
T ss_pred ChhHHHHHHHHHH-----HhhhccccccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC-------
Confidence 9988777664322 211100 011 345799999999999999999999999999976
Q ss_pred cccceeEEEEeec---------------CCCCHHHHHHHHHHhhh-cCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCc
Q 041113 639 KRSTSIKICALID---------------SNKSPVEVASIATTLVE-EGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRI 702 (983)
Q Consensus 639 ~~~~~i~~~~~~~---------------~~~~~~~~~~~~~~~~~-~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~ 702 (983)
+++|++|+++. ...++++++++++++++ +||++||+|+|. .++++|+++|++||+++ |++
T Consensus 159 --rd~v~~~a~~~~~~~~~~g~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~-~~~~~Di~rv~avRea~-pd~ 234 (441)
T 3vc5_A 159 --RDAVPYSAYLFYKWAGHPGKPEDRFGPALDPDGIVAQARLLIGEYGFRSIKLKGGV-FPPEQEAEAIQALRDAF-PGL 234 (441)
T ss_dssp --SSEEEBCEEEECBCSBCTTSCBCTTCCBCSHHHHHHHHHHHHHHHCCSSEEEECSS-SCHHHHHHHHHHHHHHS-TTC
T ss_pred --CCeEEEEEeeccccccCCCccccccccCCCHHHHHHHHHHHHHhcCCCEEEEccCC-CCHHHHHHHHHHHHHhC-CCC
Confidence 57888865431 12689999999999987 599999999997 37899999999999999 999
Q ss_pred EEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEE
Q 041113 703 ELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAI 781 (983)
Q Consensus 703 ~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i 781 (983)
.||||+|++|++++|+++++.|+++ +.|||||+++.+++++|++++++|||+||++++..+ +..+++ ..+|++
T Consensus 235 ~L~vDaN~~w~~~~Ai~~~~~L~~~-l~~iEeP~~~~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~l~~~a~dii 308 (441)
T 3vc5_A 235 PLRLDPNAAWTVETSIRVGRALDGV-LEYLEDPTPGIDGMARVAAEVPMPLATNMCVVTPEH-----LPAAVERRPIGVL 308 (441)
T ss_dssp CEEEECTTCSCHHHHHHHHHHTTTT-CSEEECCSSSHHHHHHHHTTSSSCEEESSSCCSGGG-----HHHHHHHCCCSEE
T ss_pred cEeccCCCCCCHHHHHHHHHHHHHH-HHHhhccCCCHHHHHHHHhcCCCCEEeCCCCCCHHH-----HHHHHHhCCCCEE
Confidence 9999999999999999999999999 999999999999999999999999999999999875 555554 457999
Q ss_pred EEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhccc-
Q 041113 782 VIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLK- 860 (983)
Q Consensus 782 ~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~- 860 (983)
|+|++++|||+++++++++|+++|+++++|++.+++|++++++||++++||+. + .+.+. ..|+.
T Consensus 309 ~~d~~~~GGitea~kia~lA~~~gv~v~~h~~~e~~i~~aa~~hlaaa~p~~~----------~----~~d~~-~~~~~~ 373 (441)
T 3vc5_A 309 LIDHHYWGGLVRSAHIATLCATFGIELSMHSNSHLGISLAAMTHLAAATPAIT----------H----ACDTH-TPWQDG 373 (441)
T ss_dssp EECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHHHHHTCTTBC----------S----CBCCC-GGGGTT
T ss_pred eechhhcCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCcc----------e----eeccc-chhhcc
Confidence 99999999999999999999999999999999999999999999999998641 1 11111 23443
Q ss_pred ccCC-CCCceeec----cCCCCeeeEEecchhhhhhhcc
Q 041113 861 EDVT-TDPISICH----NSCRGFVEASVAKATHILQNLQ 894 (983)
Q Consensus 861 ~d~~-~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~ 894 (983)
+|++ .+|+.+++ +|++|||||++| ++.++++.
T Consensus 374 ~d~~~~~~~~~~~G~i~~p~~PGLGveld--~~~l~~~~ 410 (441)
T 3vc5_A 374 QDVVAPGALRFVDGAVPVPDGPGLGVELD--RDALAVMH 410 (441)
T ss_dssp CCSBCTTSCCCBTTEEECCCSSBTSCCBC--HHHHHHHH
T ss_pred cccccCCCceEECCEEECCCCCCCCceEC--HHHHHHHH
Confidence 4554 46888874 999999999999 77776654
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-58 Score=522.03 Aligned_cols=356 Identities=20% Similarity=0.203 Sum_probs=290.4
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHH-HHHHHHHHhHhccC
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDA-EEQLRFLLHFMTGA 571 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~-~~~l~~~~~~l~g~ 571 (983)
|||++|+++.+++| ||.+ + . ++.++|||+||+|++||||+.+ .++...+ ...++.+.|.|+|+
T Consensus 3 MkI~~i~~~~~~~p---~~~~----~----~-~~~~~V~v~td~G~~G~GE~~~----~~~~~~~~~~~~~~l~p~liG~ 66 (393)
T 4dwd_A 3 LKIAKVEALSVAMG---DGTG----W----M-PTSAFVRITAEDGTVGWGEASP----MLGGIASLGVVARDIAPFLEGQ 66 (393)
T ss_dssp CBEEEEEEEEEECC---C--------------CEEEEEEEEETTSCEEEEEECC----GGGGHHHHHHHHHHTHHHHTTS
T ss_pred CEEEEEEEEEEcCC---Cccc----c----c-ceEEEEEEEECCCCEEEEEccC----cHHHHHHHHHHHHHHHHHHCCC
Confidence 89999999999987 5543 2 3 7899999999999999999972 2333333 22356799999999
Q ss_pred cccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeec
Q 041113 572 KISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALID 651 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~ 651 (983)
++.+++.++..++... ......+...+|++|||+|||||+||.+|+|||+||||.. +++||+|+++.
T Consensus 67 d~~~~e~~~~~l~~~~----~~~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGg~~---------r~~v~~y~s~~ 133 (393)
T 4dwd_A 67 EVLDHAVLLDRMMHRL----VKLGPEGIATAALAACDIALWDLKGKLLGQPIYKLLGGAW---------RTRLPCYSSIG 133 (393)
T ss_dssp BGGGHHHHHHHHHHHT----GGGCCTTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCS---------CSEEEEEEEEC
T ss_pred CcccHHHHHHHHHHHH----HhcCCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCCCC---------CCceeeEEecC
Confidence 9988776664332110 1111234567999999999999999999999999999985 57899999862
Q ss_pred --CCCCHHHHHHHH-HHhhhcCCCEEEEeccCC-----CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhh
Q 041113 652 --SNKSPVEVASIA-TTLVEEGFTAIKLKVARR-----ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFL 723 (983)
Q Consensus 652 --~~~~~~~~~~~~-~~~~~~G~~~~KiKig~~-----~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~ 723 (983)
...+++++++++ ++++++||++||+|+|.. .++++|+++|++||+++|+++.|+||+|++|++++|+++++.
T Consensus 134 g~~~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~ 213 (393)
T 4dwd_A 134 GNAARSVDEVVREVARRVEAEQPAAVKIRWDGDRTRCDVDIPGDIAKARAVRELLGPDAVIGFDANNGYSVGGAIRVGRA 213 (393)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCCSCCHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHcCCCEEEEccCCCCcccccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 247899999999 999999999999999861 168999999999999999999999999999999999999999
Q ss_pred cccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHH
Q 041113 724 IKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWA 801 (983)
Q Consensus 724 l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A 801 (983)
|+++++.|||||++ +++++++|++++++||++||++.+..+ +..+++.++|++++|++++||++++++++++|
T Consensus 214 L~~~~i~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~i~~~~d~v~~k~~~~GGit~~~~ia~~A 288 (393)
T 4dwd_A 214 LEDLGYSWFEEPVQHYHVGAMGEVAQRLDITVSAGEQTYTLQA-----LKDLILSGVRMVQPDIVKMGGITGMMQCAALA 288 (393)
T ss_dssp HHHTTCSEEECCSCTTCHHHHHHHHHHCSSEEEBCTTCCSHHH-----HHHHHHHTCCEECCCTTTTTHHHHHHHHHHHH
T ss_pred HHhhCCCEEECCCCcccHHHHHHHHhhCCCCEEecCCcCCHHH-----HHHHHHcCCCEEEeCccccCCHHHHHHHHHHH
Confidence 99999999999998 788999999999999999999998753 55555434999999999999999999999999
Q ss_pred HHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCC
Q 041113 802 QRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRG 877 (983)
Q Consensus 802 ~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~p 877 (983)
+++|+++++|++ +++|++++++||++++||+. . +..+ ++.+. ...|++.+|+.+++ +|++|
T Consensus 289 ~~~gi~~~~h~~-~~~i~~aa~~hlaaa~p~~~--~----~~~~-------~e~~~-~~~~~~~~~~~~~~G~i~vp~~P 353 (393)
T 4dwd_A 289 HAHGVEFVPHQT-QPGVGHFANIHVLSTLMHMT--K----PVEL-------ADRWD-RGRPVFRNPAEPVDGHFALGDAP 353 (393)
T ss_dssp HHHTCEECCCCC-CSSHHHHHHHHHHHTCTTCC--S----CEEE-------CTTGG-GGTTTBSSCCCCBTTEEECCCCS
T ss_pred HHcCCEEeecCC-CcHHHHHHHHHHHHhCCCcc--c----ccce-------eEeec-CcccccCCCceeECCEEECCCCC
Confidence 999999887776 99999999999999999641 0 0000 01011 12367778888874 99999
Q ss_pred eeeEEecchhhhhhhccccccc
Q 041113 878 FVEASVAKATHILQNLQINNDV 899 (983)
Q Consensus 878 GlGv~~d~a~~~~~~~~~~~~~ 899 (983)
|||+++| ++.++++.+....
T Consensus 354 GlGve~d--~~~l~~~~~~~~~ 373 (393)
T 4dwd_A 354 GLGIVVD--EDELASRATEITV 373 (393)
T ss_dssp BTCCCBC--HHHHHHHEEEECC
T ss_pred cCCCccC--HHHHHhccccccc
Confidence 9999999 8899998876443
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-57 Score=521.52 Aligned_cols=357 Identities=18% Similarity=0.255 Sum_probs=291.4
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccC
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGA 571 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~ 571 (983)
+|||++|+++.+++| ..|+.++.+.+. ...+.++|+|+||+|++||||+.+. + .+...++.+.|.|+|+
T Consensus 27 ~mkIt~i~~~~v~~p-~~p~~~~~g~~~---~~~~~~~V~v~td~G~~G~GE~~g~----~---~~~~~i~~l~p~LiG~ 95 (445)
T 3vdg_A 27 RIRITGARVTPVAFA-DPPLLNTVGVHQ---PYALRAVIQLDTDAGLTGLGETYAD----T---VHLERLQAAAHAIVGR 95 (445)
T ss_dssp CCBEEEEEEEEEEEE-CCCBEETTEECC---SEEEEEEEEEEETTSCEEEEEECCC----H---HHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEEEEecC-Cccccccccccc---cceeEEEEEEEECCCCeEEEeCCCh----H---HHHHHHHHHHHHhCCC
Confidence 489999999999999 789988876542 1256799999999999999998532 2 2344567899999999
Q ss_pred cccccccccccCchhhhhh----hcCCCC----CcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccce
Q 041113 572 KISYFLPLLKGSFSSWIWS----TLGIPA----CEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTS 643 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~ 643 (983)
++.+++.++..+....... ..+..+ .....+|++|||+|||||+||.+|+|||+||||.. +++
T Consensus 96 d~~~ie~i~~~l~~~~~~~~~~~~~g~~G~~~~~~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLGG~~---------r~~ 166 (445)
T 3vdg_A 96 SVFSTNVIRALISDALGGDRTGDGSGLAGMITSASVVDRVFSPFEVACLDVQGQVTGRPVSDLLGGAV---------RDA 166 (445)
T ss_dssp BTTCHHHHHHHHHHHHTSCCCSCCTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHTCBGGGGTTCCS---------SSE
T ss_pred ChhhHHHHHHHHHHhhhcccccccccccCccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC---------CCe
Confidence 9998777664322110000 001000 01455799999999999999999999999999975 578
Q ss_pred eEEEEeec---------------CCCCHHHHHHHHHHhhhc-CCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEE
Q 041113 644 IKICALID---------------SNKSPVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVD 707 (983)
Q Consensus 644 i~~~~~~~---------------~~~~~~~~~~~~~~~~~~-G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vD 707 (983)
|++|+++. ...+++++++++++++++ ||++||+|+|. .++++|+++|++||+++ |++.||||
T Consensus 167 v~~~a~~~~~~~~~~g~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~-~~~~~Di~~v~avRea~-~d~~L~vD 244 (445)
T 3vdg_A 167 VPFSAYLFYKWAAHPGAEPDGWGAALDPDGIVAQARRMIDEYGFSAIKLKGGV-FAPEEEMAAVEALRAAF-PDHPLRLD 244 (445)
T ss_dssp EEBCEEEECBCSSSTTSCCCSSCCBCSHHHHHHHHHHHHHHHCCSSEEEECSS-SCHHHHHHHHHHHHHHC-TTSCEEEE
T ss_pred EEEeeeecccccccCCccccccccCCCHHHHHHHHHHHHHhcCCCEEEECCCC-CCHHHHHHHHHHHHHhC-CCCcEEEE
Confidence 88865431 126899999999999874 99999999997 37899999999999999 99999999
Q ss_pred cCCCCCHHHHHHHHhhcccCCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCC
Q 041113 708 ANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPS 786 (983)
Q Consensus 708 aN~~~~~~~a~~~~~~l~~~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~ 786 (983)
+|++|++++|+++++.|+++ +.|||||+++++++++|++++++|||+||++.+..+ +..+++ ..+|++|+|++
T Consensus 245 aN~~w~~~~Ai~~~~~L~~~-l~~iEeP~~~~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~l~~~a~div~~d~~ 318 (445)
T 3vdg_A 245 PNAAWTPQTSVKVAAGLEGV-LEYLEDPTPGLDGMAEVAAQAPMPLATNMCVVAFDQ-----LPAAVAKNSVQVVLSDHH 318 (445)
T ss_dssp CTTCSCHHHHHHHHHHTTTT-CSEEECCSSSHHHHHHHHHHCSSCEEESSSCCSGGG-----HHHHHHHTCCSEEEECHH
T ss_pred CCCCCCHHHHHHHHHHHhhH-HHeeeCCCCCHHHHHHHHhcCCCCEEcCCcCCCHHH-----HHHHHHcCCCCEEeeCcc
Confidence 99999999999999999999 999999999999999999999999999999999875 555554 45799999999
Q ss_pred CcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccc-hhcccccC-C
Q 041113 787 VIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGT-YQWLKEDV-T 864 (983)
Q Consensus 787 ~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~d~-~ 864 (983)
++|||+++++++++|+++|+++++|++.+++|++++++||++++||+. .. ++. ..|+.+|. .
T Consensus 319 ~~GGitea~kia~lA~~~gv~v~~h~~~e~~i~~aa~~hlaaa~p~~~--------------~~--~d~~~~~~~~d~~~ 382 (445)
T 3vdg_A 319 YWGGLQRSRLLAGICDTFGLGLSMHSNSHLGISLAAMVHLAAATPNLT--------------YA--CDTHWPWRHEDVVA 382 (445)
T ss_dssp HHTSHHHHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHHHTCTTCC--------------SC--BCCCGGGCCCCSBC
T ss_pred eeCCHHHHHHHHHHHHHcCCEEEEeCCcchHHHHHHHHHHHHhCCCcc--------------ee--eccccchhhccccc
Confidence 999999999999999999999999999999999999999999998641 11 122 23444454 4
Q ss_pred CCCceeec----cCCCCeeeEEecchhhhhhhcc
Q 041113 865 TDPISICH----NSCRGFVEASVAKATHILQNLQ 894 (983)
Q Consensus 865 ~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~ 894 (983)
.+|+.+++ +|++|||||++| ++.++++.
T Consensus 383 ~~~~~~~~G~i~~p~~PGLGveld--~~~l~~~~ 414 (445)
T 3vdg_A 383 PGALNFCDGEVQVPATPGLGVEID--EDALAALH 414 (445)
T ss_dssp SSSSCEETTEEECCCSSBTSCCBC--HHHHHHHH
T ss_pred CCCceEECCEEECCCCCcCCCcCC--HHHHHHHH
Confidence 56888874 999999999999 77776654
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-58 Score=522.41 Aligned_cols=356 Identities=18% Similarity=0.211 Sum_probs=291.5
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHH-HHhHhccC
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRF-LLHFMTGA 571 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~-~~~~l~g~ 571 (983)
|||++|+++.+++|+ | .. ..++.++|||+||+|++||||+.+.....++ +...++. +.|.|+|+
T Consensus 1 MkIt~i~~~~v~~pl--p---~~-------~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~---~~~~i~~~l~p~LiG~ 65 (412)
T 4e4u_A 1 MKIVSLETHIVAVPP--P---HV-------GGMYWIFVKLKTDDGIEGVGEIYSATFGPKA---MAPIIDDVFERHLLNR 65 (412)
T ss_dssp CCEEEEEEEEEECCT--T---CT-------TCSEEEEEEEEETTSCEEEEEECCCSSCHHH---HHHHHHHHHHHHTTTS
T ss_pred CEEEEEEEEEEccCC--C---cc-------CCCceEEEEEEECCCCEEEEeecCCCCCHHH---HHHHHHHHhHHHhCCC
Confidence 799999999999998 4 11 1268999999999999999999654433332 3344443 67999999
Q ss_pred cccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeec
Q 041113 572 KISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALID 651 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~ 651 (983)
++.+++.++..++.. .+.........+|++|||||||||+||.+|+|||+||||.. +++|++|+++.
T Consensus 66 dp~~~e~~~~~l~~~----~~~~~~~~~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~---------r~~v~~yas~~ 132 (412)
T 4e4u_A 66 DPHHVERLFRQAYSS----GFTQRPDLTMMGVVSGLEMACWDIIGKAAAKPVYELLGGRI---------HERLRSYTYLY 132 (412)
T ss_dssp CTTCHHHHHHHHHHT----TTCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTTCCC---------CSSEEEEEECC
T ss_pred ChhHHHHHHHHHHHh----hhhcCCcchHHHHHHHHHHHHHHHhHhHcCCcHHHHcCCCc---------CCeeEEEEecc
Confidence 999877666432211 11111223357899999999999999999999999999975 57899998763
Q ss_pred --------CCCCHHHHHHHHHHhhhcCCCEEEEeccCCC-----------ChHHHHHHHHHHHHHcCCCcEEEEEcCCCC
Q 041113 652 --------SNKSPVEVASIATTLVEEGFTAIKLKVARRA-----------DPIKDAEVIQEVRKKVGHRIELRVDANRNW 712 (983)
Q Consensus 652 --------~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~-----------~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~ 712 (983)
...+++++++++++++++||++||+|+|.+. ++++|+++|++||+++|+++.|++|+|++|
T Consensus 133 ~~~~~~~~~~~~~e~~~~~a~~~~~~G~~~iKlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~ 212 (412)
T 4e4u_A 133 PKNAKGEYDYDDPDLAAECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRCELFCRRVREAVGSKADLLFGTHGQM 212 (412)
T ss_dssp CBCTTSCBCSSCHHHHHHHHHHHHHHTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCB
T ss_pred CCcccccccCCCHHHHHHHHHHHHHcCCCEEEECCCCCCccccccccchhhHHHHHHHHHHHHHHhCCCCeEEEECCCCC
Confidence 2358999999999999999999999998520 268899999999999999999999999999
Q ss_pred CHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcC
Q 041113 713 TYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIG 789 (983)
Q Consensus 713 ~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~G 789 (983)
|.++|+++++.|+++++.|||||++ +++++++|++++++||++||++.+..+ +..+++. .+|++|+|++++|
T Consensus 213 ~~~~A~~~~~~L~~~~i~~iEeP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~i~~~a~d~v~~d~~~~G 287 (412)
T 4e4u_A 213 VPSSAIRLAKRLEKYDPLWFEEPVPPGQEEAIAQVAKHTSIPIATGERLTTKYE-----FHKLLQAGGASILQLNVARVG 287 (412)
T ss_dssp CHHHHHHHHHHHGGGCCSEEECCSCSSCHHHHHHHHHTCSSCEEECTTCCHHHH-----HHHHHHTTCCSEECCCTTTTT
T ss_pred CHHHHHHHHHHhhhcCCcEEECCCChhhHHHHHHHHhhCCCCEEecCccCCHHH-----HHHHHHcCCCCEEEeCccccC
Confidence 9999999999999999999999998 789999999999999999999998753 6666654 4799999999999
Q ss_pred CHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCce
Q 041113 790 GFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPIS 869 (983)
Q Consensus 790 Gl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~ 869 (983)
||+++++++++|+++|+++++| +++++|++++++||++++||.. . .++ +++...+.+|++.+|+.
T Consensus 288 Git~~~kia~~A~~~gi~v~~h-~~~s~i~~aa~~hlaaa~pn~~--~---~e~---------~~~~~~~~~d~~~~~~~ 352 (412)
T 4e4u_A 288 GLLEAKKIATLAEVHYAQIAPH-LYNGPVGAAASIQLATCTPNFL--I---QES---------IMTWGGFHAEVVKTPIR 352 (412)
T ss_dssp SHHHHHHHHHHHHHTTCEECCC-CCSCHHHHHHHHHHHHTCTTBC--C---EEE---------STTSCHHHHHTBSSCCE
T ss_pred CHHHHHHHHHHHHHcCCEEEec-CCCcHHHHHHHHHHHHhCCCce--e---eee---------cCccchhhHhhccCCCe
Confidence 9999999999999999997654 5789999999999999999641 1 000 12333456788888888
Q ss_pred eec----cCCCCeeeEEecchhhhhhhc-ccccc
Q 041113 870 ICH----NSCRGFVEASVAKATHILQNL-QINND 898 (983)
Q Consensus 870 ~~~----~P~~pGlGv~~d~a~~~~~~~-~~~~~ 898 (983)
+++ +|++|||||++| ++.++++ .....
T Consensus 353 ~~~G~i~~p~~PGlGve~d--~~~l~~~~~~~~~ 384 (412)
T 4e4u_A 353 WEDGYIIPSNEPGLGIELD--MDVVKRHTPYTGE 384 (412)
T ss_dssp EETTEEECCCSSBTSCCBC--HHHHHHTCCCCCS
T ss_pred eECCEEECCCCCCCCccCC--HHHHHhccCccCC
Confidence 884 999999999999 8888888 55444
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-58 Score=523.93 Aligned_cols=363 Identities=17% Similarity=0.179 Sum_probs=293.9
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHH-HHhHhcc
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRF-LLHFMTG 570 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~-~~~~l~g 570 (983)
+|||++|+++.+++|+ | .. ..++.++|||+||+|++||||+.+.....++ +...++. +.|.|+|
T Consensus 1 ~MkIt~i~~~~v~~pl--p---~~-------~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~---~~~~i~~~l~p~liG 65 (404)
T 4e5t_A 1 SMRLSDIETFVVGNPP--P---RH-------GGRYFIFVKLVTACGITGYGEIYNATFGPDL---VAKMAEDVFARQFAG 65 (404)
T ss_dssp -CCEEEEEEEEEECCT--T---CT-------TCSEEEEEEEEETTSCEEEEEECCCSSCHHH---HHHHHHHHHHHHTTT
T ss_pred CCEEEEEEEEEeccCC--c---cc-------CCCceEEEEEEECCCCEEEEeeccCCCchHH---HHHHHHHHHHHHhcC
Confidence 3799999999999998 4 11 1267899999999999999999654433332 3344443 6799999
Q ss_pred CcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEee
Q 041113 571 AKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALI 650 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~ 650 (983)
+++.+++.++..++.. ...........+|++|||+|||||+||.+|+|||+||||+. +++|++|+++
T Consensus 66 ~dp~~~e~~~~~~~~~----~~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~---------r~~v~~y~~~ 132 (404)
T 4e5t_A 66 EDPHHIEKLWHKTYGA----GYTQRPDVTVMGVLSGLEMACWDIIGKAAGKPAYELLGGKV---------HERLRSYTYL 132 (404)
T ss_dssp SCTTCHHHHHHHHHTT----TSCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTTCCC---------CSSEEEEEEC
T ss_pred CChhHHHHHHHHHHHh----hhhcCCchHHHHHHHHHHHHHHHHhhhHcCCcHHHHcCCCC---------cCeEEEEEEe
Confidence 9999877665432211 11111123357899999999999999999999999999975 5789999875
Q ss_pred c--------------CCCCHHHHHHHHHHhhhcCCCEEEEeccCCC-----------ChHHHHHHHHHHHHHcCCCcEEE
Q 041113 651 D--------------SNKSPVEVASIATTLVEEGFTAIKLKVARRA-----------DPIKDAEVIQEVRKKVGHRIELR 705 (983)
Q Consensus 651 ~--------------~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~-----------~~~~d~~~v~~vr~~~g~~~~l~ 705 (983)
. +..+++++++++++++++||++||+|+|.+. ++++|++++++||+++|+++.|+
T Consensus 133 ~~~~~~~~p~~d~~~~~~~~e~~~~~a~~~~~~G~~~~KlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~ 212 (404)
T 4e5t_A 133 YPTDGDVYPDPDKPNVYNDADMAAEAAAKAVDQGFTAVKFDPAGAYTIYDGHQPSLEDLERSEAFCKQIRAAVGTKADLL 212 (404)
T ss_dssp CC----------CCCTTTCHHHHHHHHHHHHHHTCSEEEECCSCCCBTTCSBCCCHHHHHHHHHHHHHHHHHHGGGSEEE
T ss_pred ccccccccccccccccCCCHHHHHHHHHHHHHcCCCEEeeCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 3 1358999999999999999999999998520 27899999999999999999999
Q ss_pred EEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEE
Q 041113 706 VDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIV 782 (983)
Q Consensus 706 vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~ 782 (983)
+|+|++||.++|+++++.|+++++.|||||++ +++++++|++++++||++||++.+..+ +..+++. .+|++|
T Consensus 213 vDan~~~~~~~A~~~~~~l~~~~i~~iEeP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~i~~~a~d~v~ 287 (404)
T 4e5t_A 213 FGTHGQFTVSGAKRLARRLEAYDPLWFEEPIPPEKPEDMAEVARYTSIPVATGERLCTKYE-----FSRVLETGAASILQ 287 (404)
T ss_dssp ECCCSCBCHHHHHHHHHHHGGGCCSEEECCSCTTCHHHHHHHHHHCSSCEEECTTCCHHHH-----HHHHHHHTCCSEEC
T ss_pred EeCCCCcCHHHHHHHHHHHhhcCCcEEECCCCcccHHHHHHHHhhCCCCEEeCCCcCCHHH-----HHHHHHhCCCCEEe
Confidence 99999999999999999999999999999998 788999999999999999999998753 5555554 579999
Q ss_pred EcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhccccc
Q 041113 783 IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKED 862 (983)
Q Consensus 783 ~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d 862 (983)
+|++++||++++++++++|+++|++++.| +++++|++++++||++++||.. . .++ +++...+.+|
T Consensus 288 ~d~~~~GGit~~~~ia~~A~~~gi~~~~h-~~~s~i~~aa~~hlaaa~p~~~--~---~e~---------~~~~~~~~~~ 352 (404)
T 4e5t_A 288 MNLGRVGGLLEAKKIAAMAECHSAQIAPH-LYCGPLVALANIQLATCSPNFL--V---LES---------IRTFDGFFAE 352 (404)
T ss_dssp CCTTTSSCHHHHHHHHHHHHHTTCEECCC-CSSCHHHHHHHHHHHHTCTTBC--C---EEE---------STTSCTHHHH
T ss_pred cCccccCCHHHHHHHHHHHHHcCCEEeec-CCCcHHHHHHHHHHHHhCCCce--e---EEe---------cccccchhHH
Confidence 99999999999999999999999997654 5689999999999999999641 1 110 1222345667
Q ss_pred CCCCCceeec----cCCCCeeeEEecchhhhhhhcccccccccccc
Q 041113 863 VTTDPISICH----NSCRGFVEASVAKATHILQNLQINNDVICKTS 904 (983)
Q Consensus 863 ~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~~~~i~~~~ 904 (983)
++.+++.+++ +|++||||+++| ++.++++.......+-.+
T Consensus 353 ~~~~~~~~~~G~i~~p~~PGlGve~d--~~~~~~~~~~~~~~~~~~ 396 (404)
T 4e5t_A 353 LLTTPIRWENGYIIPSQEPGLGHDLN--EDVARANPYTGSDLHLGF 396 (404)
T ss_dssp TBSSCCEEETTEEECCCSSBTSSCBC--HHHHHTSBCCCCSCSSCC
T ss_pred hcCCCCeeeCCEEECCCCCCCCcCCC--HHHHHhCcCCCCcceecc
Confidence 8888888884 999999999999 888889887655544333
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-58 Score=519.97 Aligned_cols=349 Identities=16% Similarity=0.111 Sum_probs=290.6
Q ss_pred cceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHH-HHHHHhHhc
Q 041113 491 SICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQ-LRFLLHFMT 569 (983)
Q Consensus 491 ~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~-l~~~~~~l~ 569 (983)
++|||++|+++.+++|++.||.++.+.+ ..++.++|+|+|++|++||||+.+.....+ .+... .+.+.|.|+
T Consensus 25 ~~mkI~~i~~~~~~~pl~~p~~~s~g~~----~~~~~~~V~v~td~G~~G~GE~~~~~~~~~---~~~~~i~~~l~p~l~ 97 (383)
T 3toy_A 25 TTAAITGVTARAVITPMKRPLRNAFGVI----DSGPLVLIDVTTDQGVTGHSYLFAYTRLAL---KPLVHLVEDIGRELA 97 (383)
T ss_dssp CCCBEEEEEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEEESSSCEEEEEEECSSGGGH---HHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEEEEEeccCCCcccCccccc----cceeEEEEEEEECCCCEEEEEeeCCCCchH---HHHHHHHHHHHHHhC
Confidence 4589999999999999999999998764 448999999999999999999987643222 22233 367899999
Q ss_pred cCcccccccccccCchhhhhhhcCC-CCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEE
Q 041113 570 GAKISYFLPLLKGSFSSWIWSTLGI-PACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA 648 (983)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~ 648 (983)
|+++.+++ ++..+ ...... ...+..++|++|||+|||||+||.+|+|||+||||.+ ++||+|+
T Consensus 98 G~d~~~~e-~~~~l-----~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~----------~~v~~y~ 161 (383)
T 3toy_A 98 GKALVPVD-LMKAM-----DAKFRLLGWQGLVGMAVSGLDMAFWDALGQLAGKPVVELLGGSA----------RPIPAYD 161 (383)
T ss_dssp TCBCCHHH-HHHHH-----HHHTTTTCCSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCC----------CCEEEEE
T ss_pred CCCCCcHH-HHHHH-----HHHHhhcCCcchHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC----------CceEEeE
Confidence 99998765 54322 111111 1224467899999999999999999999999999975 6799999
Q ss_pred eecCCCCHHHHHHHHHHhhhc-CCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccC
Q 041113 649 LIDSNKSPVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727 (983)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~-G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~ 727 (983)
++ +..+++++++++++++++ ||++||+|+|. .++++|+++|++||+++|+++.|++|+|++|++++|+++++.|+++
T Consensus 162 s~-g~~~~e~~~~~a~~~~~~~G~~~~KlKvG~-~~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~ 239 (383)
T 3toy_A 162 SY-GVLDARDDERTLRTACDEHGFRAIKSKGGH-GDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADY 239 (383)
T ss_dssp EC-SSCCHHHHHHHHHHHHHTSCCCEEEEECCS-SCHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGG
T ss_pred ec-CCCCHHHHHHHHHHHHHccCCcEEEEecCC-CCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 86 347899999999999999 99999999997 3789999999999999999999999999999999999999999999
Q ss_pred CCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHc
Q 041113 728 DLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRH 804 (983)
Q Consensus 728 ~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~ 804 (983)
++.|||||++ +++++++|++++++||++||++.+..+ +..+++ ..+|++|+|++++||++++++++++|+++
T Consensus 240 ~i~~iEeP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~i~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~ 314 (383)
T 3toy_A 240 DLTWIEEPVPQENLSGHAAVRERSEIPIQAGENWWFPRG-----FAEAIAAGASDFIMPDLMKVGGITGWLNVAGQADAA 314 (383)
T ss_dssp CCSEEECCSCTTCHHHHHHHHHHCSSCEEECTTCCHHHH-----HHHHHHHTCCSEECCCTTTTTHHHHHHHHHHHHHHH
T ss_pred CCCEEECCCCcchHHHHHHHHhhcCCCEEeCCCcCCHHH-----HHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHc
Confidence 9999999998 788999999999999999999998753 555555 45799999999999999999999999999
Q ss_pred CCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec---cCCCCeeeE
Q 041113 805 GKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH---NSCRGFVEA 881 (983)
Q Consensus 805 gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~---~P~~pGlGv 881 (983)
|+++++|++. .+++|++++++|.. . ++.. .+..+++.+|+.+++ +|++|||||
T Consensus 315 gi~~~~h~~~------~a~lhl~aa~p~~~--~---------------~e~~-~~~~~~~~~~~~~~~Gi~~p~~PGlGv 370 (383)
T 3toy_A 315 SIPMSSHILP------EASAHVLPVTPTAH--F---------------LEVL-DFAGAILTEPLRVIDGKVTAKGPGLGL 370 (383)
T ss_dssp TCCBCCCSCH------HHHHHHGGGCTTBC--C---------------EEEC-CSSGGGBSSCCCCBTTEECCCCSBTSC
T ss_pred CCEEeecCHH------HHHHHHHHhCCCCc--e---------------eecc-chhhhhccCCCeeeCCEECCCCCcCCc
Confidence 9998887764 36789999998641 0 0111 134456666776663 999999999
Q ss_pred Eecchhhhhhhccc
Q 041113 882 SVAKATHILQNLQI 895 (983)
Q Consensus 882 ~~d~a~~~~~~~~~ 895 (983)
++| ++.++++++
T Consensus 371 e~d--~~~l~~~~v 382 (383)
T 3toy_A 371 AWN--ESAVAKYQV 382 (383)
T ss_dssp CBC--HHHHHHHEE
T ss_pred cCC--HHHHHhhhC
Confidence 999 888888765
|
| >4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-58 Score=528.38 Aligned_cols=367 Identities=14% Similarity=0.138 Sum_probs=284.7
Q ss_pred cCCccceeEeEEEEEEEEeeCCCCCccccccc-------------cCcce--eeeEEEEEEEECCCCEEEEeecCcCcCc
Q 041113 487 SCSLSICKICRMEYSLYRIQLCAPPTSSYIDH-------------NRSRF--CREGFILSLYLEDGSVGYGEVAPLEIHK 551 (983)
Q Consensus 487 ~~~~~~mkI~~v~~~~~~~pl~~p~~~~~~~~-------------~~~~~--~~~~~lv~v~t~~G~~G~GE~~~~~~~~ 551 (983)
.++|.+.||++|+++.+.+|+..|+..+.... ++..+ ....++|||+||+|++||||+.+... .
T Consensus 20 Fqsm~~~~I~~i~~~~v~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~r~VlVri~td~G~~G~GE~~~~~~-~ 98 (412)
T 4h1z_A 20 FQSMMSDRVKKIESFTLTLPRETPYLGKPRPGEEPNGRGYLVRKANRTVYPTFDRSVLVRIETENGAVGWGETYGLVA-P 98 (412)
T ss_dssp -----CCCEEEEEEEEEECC------------CCCCTTSEEECTTTCCEEESSCEEEEEEEEETTCCEEEEEEECSSC-H
T ss_pred HHhhccceeeEEEEEEEecccCCccccccccccccccccceeeccCcccCCCCCCcEEEEEEECCCCEEEEecCCCCC-H
Confidence 35676679999999999999999975432110 00001 14569999999999999999976532 1
Q ss_pred ccHHHHHHHHH-HHHhHhccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCC
Q 041113 552 ENLLDAEEQLR-FLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPL 630 (983)
Q Consensus 552 ~~~~~~~~~l~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~ 630 (983)
+ .+.+.+. .++|.|+|+++.+++.++..+.... ...+ ...+...+|++|||+|||||+||.+|+|||+||||.
T Consensus 99 ~---~~~~~i~~~lap~liG~dp~~~~~i~~~l~~~~--~~~~-~~~g~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGG~ 172 (412)
T 4h1z_A 99 R---ATMEIIDDLLADFTIGRDPFDAAAIHDDLYDLM--RVRG-YTGGFYVDALAAIDIALWDLAGKLAGLPVCKLLGGQ 172 (412)
T ss_dssp H---HHHHHHHHTHHHHHTTSCGGGHHHHHHHHHTTT--GGGT-CCSHHHHHHHHHHHHHHHHHHHHHHTCBGGGGTTCC
T ss_pred H---HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH--Hhcc-cccchHHHHHHHHHHHHHHHHHHHcCCCHHHhcCCC
Confidence 1 2233333 4789999999988766654321110 1111 112345679999999999999999999999999998
Q ss_pred CccccccccccceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCC
Q 041113 631 TEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANR 710 (983)
Q Consensus 631 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~ 710 (983)
. ++++++|++.....+++++.+.+++++++||++||+|+|. +.+.|+++++++|+++|+++.||+|+|+
T Consensus 173 ~---------~~~v~~y~s~~~~~~~~~~~~~a~~~~~~G~~~~K~k~g~--~~~~~~~~v~~vR~~~g~~~~l~vDaN~ 241 (412)
T 4h1z_A 173 R---------RDRIAAYISGLPEDTRAKRAELAAAWQAKGFSSFKFASPV--ADDGVAKEMEILRERLGPAVRIACDMHW 241 (412)
T ss_dssp C---------CSEEEEEECCCCCSSHHHHHHHHHHHHHTTCCEEEEEGGG--CTTCHHHHHHHHHHHHCSSSEEEEECCS
T ss_pred C---------CceEEEEeccCCCCcHHHHHHHHHHHHhcCcceecccccc--chhhHHHHHHHHHhccCCeEEEEecccc
Confidence 7 6789999887667789999999999999999999999997 5678999999999999999999999999
Q ss_pred CCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCC
Q 041113 711 NWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSV 787 (983)
Q Consensus 711 ~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~ 787 (983)
+||+++|+++++.|+++++.|||||++ |++++++|++++++|||+||++++..+ +..+++. .+|++|+|+++
T Consensus 242 ~~~~~~A~~~~~~l~~~~l~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~i~~~a~div~~d~~~ 316 (412)
T 4h1z_A 242 AHTASEAVALIKAMEPHGLWFAEAPVRTEDIDGLARVAASVSTAIAVGEEWRTVHD-----MVPRVARRALAIVQPEMGH 316 (412)
T ss_dssp CCCHHHHHHHHHHHGGGCEEEEECCSCTTCHHHHHHHHHHCSSEEEECTTCCSHHH-----HHHHHHTTCCSEECCCHHH
T ss_pred CCCHHHHHHHHHhhcccccceecCCCCccchHHHHHHHhhcCCccccCCcccchHh-----HHHHHHcCCCCEEEecCCC
Confidence 999999999999999999999999998 789999999999999999999999764 5555544 47999999986
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCC
Q 041113 788 IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDP 867 (983)
Q Consensus 788 ~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p 867 (983)
|||++++|++++|+++|++++.|++++++|++++++|++++++|+.. .+ +. .....+.++++.++
T Consensus 317 -GGit~~~kia~~A~~~gi~v~~h~~~~~~i~~aa~lhl~aa~~~~~~-----~e--------~~-~~~~~~~~~~~~~~ 381 (412)
T 4h1z_A 317 -KGITQFMRIGAYAHVHHIKVIPHATIGAGIFLAASLQASAALANVDC-----HE--------FQ-HSIFEPNRRLLVGD 381 (412)
T ss_dssp -HHHHHHHHHHHHHHHTTCEECCCCCSSCSHHHHHHHHHHHHCTTBCC-----EE--------EC-HHHHTGGGGGEEEC
T ss_pred -CChHHHHHHHHHHHHCCCcEEecCCcchHHHHHHHHHHHHhCCCCCe-----ee--------cc-ccccccchhhccCC
Confidence 99999999999999999999999999999999999999999997421 00 00 11123345666778
Q ss_pred ceeec----cCCCCeeeEEecchhhhhhhc
Q 041113 868 ISICH----NSCRGFVEASVAKATHILQNL 893 (983)
Q Consensus 868 ~~~~~----~P~~pGlGv~~d~a~~~~~~~ 893 (983)
+.+++ +|++||||||+| ++.++.+
T Consensus 382 ~~~~~G~i~vp~~PGLGve~d--~eal~~~ 409 (412)
T 4h1z_A 382 MDCLNGEYVVPTGPGLGVEPS--KEAQGLL 409 (412)
T ss_dssp CEEETTEEECCCSSBTSEEEC--HHHHHHC
T ss_pred CeEECCEEECCCCCCCCeEEC--HHHHHHh
Confidence 88874 999999999999 5555544
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-58 Score=518.83 Aligned_cols=357 Identities=15% Similarity=0.145 Sum_probs=301.6
Q ss_pred ccceeEeEEEEEEEEeeCCC-CCccccccccCcceeeeEEEEEEEECCCCEEEEeecCc-C-cCcccHHHHHHHHHHHHh
Q 041113 490 LSICKICRMEYSLYRIQLCA-PPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL-E-IHKENLLDAEEQLRFLLH 566 (983)
Q Consensus 490 ~~~mkI~~v~~~~~~~pl~~-p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~-~-~~~~~~~~~~~~l~~~~~ 566 (983)
|++|||++|+++.+++|++. ||.++.+.. .+.++.++|+|+|++|++||||+.+. + +++++...+...++.+.|
T Consensus 1 m~~MkI~~i~~~~~~~pl~~~p~~~s~~~~---~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~i~~l~~ 77 (371)
T 2ps2_A 1 MSDLKIARIDVFQVDLPYSGGVYYLSAGRE---YRSFDATIVRITTDTGIEGWGESTPFGSNYIASHPRGVRAGIATMAP 77 (371)
T ss_dssp --CCCEEEEEEEEEEECBTTSCCCCC----------EEEEEEEEEETTSCEEEEEECCSTTTSSSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEEEecccCCCCeeecccce---eccCceEEEEEEECCCCEEEEEEecCCcccCCCCHHHHHHHHHHHHH
Confidence 55689999999999999999 998876521 13488999999999999999999875 3 456676667777878999
Q ss_pred HhccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEE
Q 041113 567 FMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKI 646 (983)
Q Consensus 567 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~ 646 (983)
.|+|+++.+++.++..+ .... ...++|++|||+||||+.||.+|+|||+||||.. +++||+
T Consensus 78 ~l~g~d~~~~~~~~~~l-----~~~~-----~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~---------~~~vp~ 138 (371)
T 2ps2_A 78 SLIGLDPRRVDRINDAM-----DDAL-----LGHEDAKTAIDVACWDIFGKSVGLPVCELLGGRT---------NTRLPL 138 (371)
T ss_dssp HHTTSCTTCHHHHHHHH-----HHHC-----SSCHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCC---------SSCEEB
T ss_pred HHCCCCcccHHHHHHHH-----HHHh-----cccHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC---------CCceEE
Confidence 99999988765554321 1111 1246899999999999999999999999999975 468999
Q ss_pred EEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhc-c
Q 041113 647 CALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLI-K 725 (983)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l-~ 725 (983)
|++++ ..+++++.+.+++++++||++||+|+|. +++.|+++|++||+++|+++.|++|+|++|+.++|+++++.| +
T Consensus 139 ~~~~~-~~~~~~~~~~a~~~~~~Gf~~iKik~g~--~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~ 215 (371)
T 2ps2_A 139 ISSIY-VGEPEDMRARVAKYRAKGYKGQSVKISG--EPVTDAKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLPH 215 (371)
T ss_dssp EEEEC-SCCHHHHHHHHHHHHTTTCCEEEEECCS--CHHHHHHHHHHHTTTCCTTCEEEEECTTBCCHHHHHHHHHHSCT
T ss_pred EEEeC-CCCHHHHHHHHHHHHHhChheEEeecCC--CHHHHHHHHHHHHHhcCCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 99874 4689999999999999999999999996 789999999999999999999999999999999999999999 9
Q ss_pred cCCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHc
Q 041113 726 DCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRH 804 (983)
Q Consensus 726 ~~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~ 804 (983)
++++ |||||+++++.++++++++++||++||++.+.. .+..+++ ..+|++++|++++||++++++++++|+++
T Consensus 216 ~~~i-~iE~P~~~~~~~~~l~~~~~iPI~~dE~~~~~~-----~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~ 289 (371)
T 2ps2_A 216 GLDF-ALEAPCATWRECISLRRKTDIPIIYDELATNEM-----SIVKILADDAAEGIDLKISKAGGLTRGRRQRDICLAA 289 (371)
T ss_dssp TCCC-EEECCBSSHHHHHHHHTTCCSCEEESTTCCSHH-----HHHHHHHHTCCSEEEEEHHHHTSHHHHHHHHHHHHHH
T ss_pred hcCC-cCcCCcCCHHHHHHHHhhCCCCEEeCCCcCCHH-----HHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHc
Confidence 9999 999999989999999999999999999998865 3555554 45799999999999999999999999999
Q ss_pred CCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeee
Q 041113 805 GKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVE 880 (983)
Q Consensus 805 gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlG 880 (983)
|+++++||++||+|++++++|++++++|.. ..+++++..++.+|++.+|+.+++ +|++||||
T Consensus 290 g~~~~~~~~~es~i~~aa~~hlaa~~~~~~--------------~~~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlG 355 (371)
T 2ps2_A 290 GYSVSVQETCGSDIAFAAIVHLAQTIPERS--------------LRCILECRDMVTVKTADGAFDIQDGFATAPTTPGLG 355 (371)
T ss_dssp TCEEEEECSSCCHHHHHHHHHHHTTSCTTT--------------EEEECCGGGGBSCCCEECCCCCBTTEECCCCSSBTS
T ss_pred CCeEEecCCCcCHHHHHHHHHHHHhCCCcc--------------cccccccchhhhccccCCCceEECCEEECCCCCCCC
Confidence 999999999999999999999999998631 122345556778888777887773 89999999
Q ss_pred EEecchhhhhhhc
Q 041113 881 ASVAKATHILQNL 893 (983)
Q Consensus 881 v~~d~a~~~~~~~ 893 (983)
+++| ++.+++.
T Consensus 356 v~~d--~~~l~~~ 366 (371)
T 2ps2_A 356 IMPR--LDVLGEA 366 (371)
T ss_dssp CEEC--HHHHCSC
T ss_pred CeeC--HHHHhCh
Confidence 9999 6666543
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-58 Score=521.22 Aligned_cols=353 Identities=17% Similarity=0.149 Sum_probs=291.7
Q ss_pred ccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhc
Q 041113 490 LSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMT 569 (983)
Q Consensus 490 ~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~ 569 (983)
|++|||++|+++.+++|++.||.++.+.+ ..++.++|+|+|++|++||||+.+.....+. ......+.+.|.|+
T Consensus 25 ~~~mkI~~i~~~~~~~pl~~p~~~s~g~~----~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~--~~~~~~~~l~p~li 98 (390)
T 3ugv_A 25 AQTLTFRKLTARPVLLKLQRPVTARIATI----PDWPLILIDIETEEGVPGRAYLEPYVPKAMK--YLVPALHDMSDMLA 98 (390)
T ss_dssp --CCBEEEEEEEEEEEEEEEEEECSSCEE----EEEEEEEEEEEETTSCCEEEEECCSCGGGHH--HHHHHHHHHHHHHT
T ss_pred CCCCEEEEEEEEEEEecCCCCccCccccc----ccceEEEEEEEECCCCEEEEEeecCCCchHH--HHHHHHHHHHHHHC
Confidence 34589999999999999999999998764 4489999999999999999999875422221 12223367999999
Q ss_pred cCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEe
Q 041113 570 GAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICAL 649 (983)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~ 649 (983)
|+++.++ .++..+.... ...+ ..+..++|++|||+|||||+||.+|+|||+||||.+ ++||+|++
T Consensus 99 G~d~~~~-~~~~~l~~~~--~~~g--~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~----------~~v~~y~s 163 (390)
T 3ugv_A 99 GQPLAPA-EIYDKTRKSL--HFVG--YAGLSMIAASGVDMAVWDALARAANMPLCTLLGGTP----------GSVKAYNS 163 (390)
T ss_dssp TSBCCHH-HHHHHHHHHT--GGGC--SSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCC----------CEEEEEEC
T ss_pred CCCcchH-HHHHHHHHHH--HhhC--CcchHHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCC----------CceEEEEe
Confidence 9998876 5543221110 0011 124567999999999999999999999999999975 67999987
Q ss_pred ecC--CCCHHHHHHHHHHhhhc---CCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhc
Q 041113 650 IDS--NKSPVEVASIATTLVEE---GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLI 724 (983)
Q Consensus 650 ~~~--~~~~~~~~~~~~~~~~~---G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l 724 (983)
+.. ..+++++++++++++++ ||++||+|+|. .++++|+++|++||+++|+++.|++|+|++|++++|+++++.|
T Consensus 164 ~g~~~~~~~e~~~~~a~~~~~~~~~G~~~iKlKvG~-~~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l 242 (390)
T 3ugv_A 164 NGLWLKSPAEVAAEAVELKAEGQGTGFKGLKLRMGR-DDPAVDIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQI 242 (390)
T ss_dssp SCCCSSCHHHHHHHHHHHHHTTCTTCCSEEEEECCC-SSHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHhhhCCCcEEEEecCC-CCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 632 26899999999999999 99999999997 3789999999999999999999999999999999999999999
Q ss_pred ccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHH
Q 041113 725 KDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWA 801 (983)
Q Consensus 725 ~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A 801 (983)
+++++.|||||++ +++++++|++++++||++||++.+..+ +..+++. .+|++|+|++++||++++++++++|
T Consensus 243 ~~~~i~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~i~~~a~d~v~ik~~~~GGit~~~~i~~~A 317 (390)
T 3ugv_A 243 DDLGLEWIEEPVVYDNFDGYAQLRHDLKTPLMIGENFYGPRE-----MHQALQAGACDLVMPDFMRIGGVSGWMRAAGVA 317 (390)
T ss_dssp TTSCCSEEECCSCTTCHHHHHHHHHHCSSCEEECTTCCSHHH-----HHHHHHTTCCSEECCBHHHHTHHHHHHHHHHHH
T ss_pred HhhCCCEEECCCCcccHHHHHHHHHhcCCCEEeCCCcCCHHH-----HHHHHHcCCCCEEEeCccccCCHHHHHHHHHHH
Confidence 9999999999998 788999999999999999999998753 6666654 4799999999999999999999999
Q ss_pred HHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCC
Q 041113 802 QRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRG 877 (983)
Q Consensus 802 ~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~p 877 (983)
+++|+++++|++. .+++|++++++|.. . ++.. .+..+++.+|+.+++ +|++|
T Consensus 318 ~~~gi~~~~h~~~------~a~lhl~aa~p~~~--~---------------~e~~-~~~~~~~~~~~~~~~G~i~~p~~P 373 (390)
T 3ugv_A 318 GAWGIPMSTHLYP------EVGAHVMRVTETAH--W---------------LEWQ-SWADPILQEPYALSDGDLIVPDKP 373 (390)
T ss_dssp HHHTCCBCCBSCH------HHHHHHHTTCTTBC--C---------------EEEC-CTTGGGBSSCCCEETTEEECCSSS
T ss_pred HHcCCEEeecCHH------HHHHHHHHhCCCCc--e---------------eecc-chhhhhccCCCeeECCEEECCCCC
Confidence 9999999887764 36789999998641 0 0111 134567778888874 99999
Q ss_pred eeeEEecchhhhhhhccc
Q 041113 878 FVEASVAKATHILQNLQI 895 (983)
Q Consensus 878 GlGv~~d~a~~~~~~~~~ 895 (983)
||||++| ++.++++++
T Consensus 374 GlGve~d--~~~l~~~~~ 389 (390)
T 3ugv_A 374 GLGLDWD--EDVVAANLV 389 (390)
T ss_dssp BTCCCBC--HHHHHTTBC
T ss_pred cCCCCcC--HHHHHhhhc
Confidence 9999999 888888764
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-58 Score=517.05 Aligned_cols=353 Identities=16% Similarity=0.199 Sum_probs=290.1
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHH---------
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRF--------- 563 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~--------- 563 (983)
|||++|+++.+++|++.+. +++ ..++ ++|||+||+|++||||+. ++...+...++.
T Consensus 3 MkI~~i~~~~~~~P~~~~~----~~~----~~~~-~~V~v~td~G~~G~GE~~------~~~~~~~~~i~~~~~~~~~~~ 67 (374)
T 3sjn_A 3 LKITDIEVLHLRVPAMDAD----CEW----GEDA-VIVKVHTDKGIVGVGEAD------SSPLVVQACIEAPQTNFYCNG 67 (374)
T ss_dssp CBEEEEEEEEEESSCTTSC----CCT----TSEE-EEEEEEETTSCEEEEEES------SCHHHHHHHHHCCCSBTTBCC
T ss_pred cEEEEEEEEEEeccCcCCc----Ccc----cceE-EEEEEEECCCCEEEEcCC------CChHHHHHHHHhhhccchHhH
Confidence 8999999999998876652 222 1245 899999999999999932 223344555665
Q ss_pred HHhHhccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccce
Q 041113 564 LLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTS 643 (983)
Q Consensus 564 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~ 643 (983)
+.|.|+|+++.+++.++..++. ........+...+|++|||+|||||+||.+|+|||+||||.. +++
T Consensus 68 l~p~liG~d~~~~~~~~~~l~~----~~~~~~~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGg~~---------r~~ 134 (374)
T 3sjn_A 68 LKRLLIGENALEIERLWNKMYW----GSNYMGRRGAGIHAISAIDIALWDIAGQFYGVPVHTLLGGKY---------RDK 134 (374)
T ss_dssp HHHHHTTSBTTCHHHHHHHHHH----HTTTTCSSBHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCS---------CSE
T ss_pred HHHHHcCCCcccHHHHHHHHHH----hhhhcCCccHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCCc---------CCc
Confidence 8999999999887666643221 111112345567899999999999999999999999999965 578
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC-CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCC-HHHHHHHH
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR-ADPIKDAEVIQEVRKKVGHRIELRVDANRNWT-YQEALEFG 721 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~-~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~-~~~a~~~~ 721 (983)
||+|..+....+++++++.+++++++||++||+|+|.. .++++|++++++||+++|+++.|++|+|++|+ +++|++++
T Consensus 135 v~~y~~~~~~~~~e~~~~~a~~~~~~Gf~~iKlk~g~~g~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~~ 214 (374)
T 3sjn_A 135 IRCYGTFIPADKPEDNVAIVQGLKDQGFSSIKFGGGVMGDDPDTDYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMMA 214 (374)
T ss_dssp EEEEEEECCCSSGGGGHHHHHHHHTTTCSEEEEECTTTTSCHHHHHHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHHHH
T ss_pred eeEEeccCCCCCHHHHHHHHHHHHHcCCCEEEeccCCCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHH
Confidence 99996554334558999999999999999999999842 26899999999999999999999999999999 99999999
Q ss_pred hhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHH
Q 041113 722 FLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIA 798 (983)
Q Consensus 722 ~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~ 798 (983)
+.|+++++.|||||++ +++++++|++++++||++||++++..+ +..+++ ..+|++++|++++||++++++++
T Consensus 215 ~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~l~~~~~d~v~~k~~~~GGit~~~~ia 289 (374)
T 3sjn_A 215 KRLEEFNLNWIEEPVLADSLISYEKLSRQVSQKIAGGESLTTRYE-----FQEFITKSNADIVQPDITRCGGITEMKKIY 289 (374)
T ss_dssp HHSGGGCCSEEECSSCTTCHHHHHHHHHHCSSEEEECTTCCHHHH-----HHHHHHHHCCSEECCBTTTSSHHHHHHHHH
T ss_pred HHhhhcCceEEECCCCcccHHHHHHHHhhCCCCEEeCCCcCCHHH-----HHHHHHcCCCCEEEeCccccCCHHHHHHHH
Confidence 9999999999999998 788999999999999999999998753 555554 35799999999999999999999
Q ss_pred HHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cC
Q 041113 799 RWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NS 874 (983)
Q Consensus 799 ~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P 874 (983)
++|+++|+++++|++ +++|++++++||+++++|.. . .++ .....++.+|++.+|+.+++ +|
T Consensus 290 ~~A~~~gi~~~~h~~-~~~i~~aa~~hlaaa~~~~~--~---~e~---------~~~~~~~~~d~~~~~~~~~~G~~~~p 354 (374)
T 3sjn_A 290 DIAQMNGTQLIPHGF-STGILLHASVHFLAACEQGT--L---MEF---------SQSSSPLFTSLVKNQLQFDNGFVAVS 354 (374)
T ss_dssp HHHHHHTCEECCBCC-SCHHHHHHHHHHHHTCTTCC--E---EEE---------ECCCCHHHHHSBTTCCCEETTEEECC
T ss_pred HHHHHcCCEEEecCC-CcHHHHHHHHHHHHhCCCCc--E---EEe---------cCCcchhhhhhccCCCeeeCcEEECC
Confidence 999999999887776 99999999999999999641 1 111 11223456788888898884 99
Q ss_pred CCCeeeEEecchhhhhhhccc
Q 041113 875 CRGFVEASVAKATHILQNLQI 895 (983)
Q Consensus 875 ~~pGlGv~~d~a~~~~~~~~~ 895 (983)
++||||+++| ++.++++++
T Consensus 355 ~~PGlGv~~d--~~~l~~~~~ 373 (374)
T 3sjn_A 355 DAPGLGIELD--EELIAKYRV 373 (374)
T ss_dssp CSSBTCCCBC--HHHHHHHBC
T ss_pred CCCCCCCCcC--HHHHHhccC
Confidence 9999999999 888888765
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-58 Score=523.88 Aligned_cols=353 Identities=16% Similarity=0.159 Sum_probs=291.8
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHH-HHhHhccC
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRF-LLHFMTGA 571 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~-~~~~l~g~ 571 (983)
|||++|+++.++.|++ +.+ .++.++|||+||+|++||||+.+.....++ +...++. +.|.|+|+
T Consensus 2 MkIt~i~~~~~~~p~~-----~~~-------~~~~v~V~v~Td~G~~G~GE~~~~~~~~~~---v~~~i~~~l~p~LiG~ 66 (433)
T 3rcy_A 2 VKLRDLDIIVTAPPAP-----GWG-------GRYWILVKLTTDDGITGWGECYAASVGPEA---MRAVIEDVFARHMEGE 66 (433)
T ss_dssp CCEEEEEEEEECCCTT-----CTT-------CSCEEEEEEEETTSCEEEEEECCCSSCHHH---HHHHHHHHHHHHTTTS
T ss_pred CeEEEEEEEEEcCCCC-----ccC-------CceEEEEEEEECCCCEEEEeccCCCCCHHH---HHHHHHHHHHHHhCCC
Confidence 8999999999988873 121 267899999999999999998765543333 3444554 89999999
Q ss_pred cccccccccccCchhhhhhhcCCCCCc-chhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEee
Q 041113 572 KISYFLPLLKGSFSSWIWSTLGIPACE-IFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALI 650 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~ 650 (983)
++.+++.++..++ +........ ...+|++|||||||||+||.+|+|||+||||.. +++|++|+++
T Consensus 67 dp~~ie~~~~~l~-----~~~~~~~g~~~~~~A~saID~ALWDl~gK~~g~Pv~~LLGG~~---------r~~v~~y~~~ 132 (433)
T 3rcy_A 67 NPENIELMFRRVY-----SSGFTQRPDLTAIGAFSGLEIACWDILGKARGRPVWALLGGKM---------NPRIRAYTYL 132 (433)
T ss_dssp CTTCHHHHHHHHH-----HTTTCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTTCCS---------CSSEEEEEEC
T ss_pred CcccHHHHHHHHH-----hcccccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCCCC---------CCeEEEEEEE
Confidence 9998776664322 111111112 467899999999999999999999999999976 5789999876
Q ss_pred c---C------CCCHHHHHHHHHHhhhcCCCEEEEeccCCC-----------ChHHHHHHHHHHHHHcCCCcEEEEEcCC
Q 041113 651 D---S------NKSPVEVASIATTLVEEGFTAIKLKVARRA-----------DPIKDAEVIQEVRKKVGHRIELRVDANR 710 (983)
Q Consensus 651 ~---~------~~~~~~~~~~~~~~~~~G~~~~KiKig~~~-----------~~~~d~~~v~~vr~~~g~~~~l~vDaN~ 710 (983)
. + ..+++++++++++++++||++||+|+|.+. +++.|+++|++||+++|+++.|++|+|+
T Consensus 133 ~~~~g~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~~~G~~~~~~~~~~d~e~v~avR~avG~d~~L~vDan~ 212 (433)
T 3rcy_A 133 YPLPHHPITPFWTSADMAAESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAVGDKADLLFGTHG 212 (433)
T ss_dssp CCCTTSCHHHHTTCHHHHHHHHHHHHHTTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCS
T ss_pred cccCCcccccCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCcccccCCCcchhhHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 2 1 168999999999999999999999998521 3578999999999999999999999999
Q ss_pred CCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCC
Q 041113 711 NWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSV 787 (983)
Q Consensus 711 ~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~ 787 (983)
+|+.++|+++++.|+++++.|||||++ +++.+++|++++++||++||++.+..+ +..+++. .+|++|+|+++
T Consensus 213 ~~t~~~A~~~~~~Le~~~i~~iEeP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~l~~g~~D~v~~d~~~ 287 (433)
T 3rcy_A 213 QFTTAGAIRLGQAIEPYSPLWYEEPVPPDNVGAMAQVARAVRIPVATGERLTTKAE-----FAPVLREGAAAILQPALGR 287 (433)
T ss_dssp CBCHHHHHHHHHHHGGGCCSEEECCSCTTCHHHHHHHHHHSSSCEEECTTCCSHHH-----HHHHHHTTCCSEECCCHHH
T ss_pred CCCHHHHHHHHHHhhhcCCCEEECCCChhhHHHHHHHHhccCCCEEecCCCCCHHH-----HHHHHHcCCCCEEEeCchh
Confidence 999999999999999999999999998 788999999999999999999998753 6666654 47999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCC
Q 041113 788 IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDP 867 (983)
Q Consensus 788 ~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p 867 (983)
+|||+++++++++|+++|+++++|+ ++++|++++++||++++||+. . +.+... .+.+|++.++
T Consensus 288 ~GGit~~~kia~lA~~~gv~~~~h~-~~s~i~~aa~lhlaaa~pn~~--~-------------~E~~~~-~~~~~~~~~~ 350 (433)
T 3rcy_A 288 AGGIWEMKKVAAMAEVYNAQMAPHL-YAGPVEWAANVHFAASIPNIL--M-------------CESIET-PFHDALIKGS 350 (433)
T ss_dssp HTHHHHHHHHHHHHHTTTCEECCCC-SSCHHHHHHHHHHHHTCTTBC--C-------------EECCCC-HHHHHHTTTC
T ss_pred cCCHHHHHHHHHHHHHcCCEEEecC-CCCHHHHHHHHHHHHHhccCc--E-------------EEeccc-hhhhhhcCCC
Confidence 9999999999999999999987664 799999999999999999641 1 011112 3456777888
Q ss_pred ceeec----cCCCCeeeEEecchhhhhhhcccccc
Q 041113 868 ISICH----NSCRGFVEASVAKATHILQNLQINND 898 (983)
Q Consensus 868 ~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~~~ 898 (983)
+.+++ +|++|||||++| ++.++++.....
T Consensus 351 ~~~~~G~i~~p~~PGLGve~d--~~~l~~~~~~~~ 383 (433)
T 3rcy_A 351 IRVEGGYITPPEAPGLGIEVD--EALARANPYHGT 383 (433)
T ss_dssp SCEETTEECCCCSSBTCCCCC--HHHHHTSBCCCS
T ss_pred ceEECCEEEcCCCCcCCcccC--HHHHHhccCCCc
Confidence 88884 999999999999 888989886644
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-58 Score=523.25 Aligned_cols=360 Identities=18% Similarity=0.206 Sum_probs=282.5
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCc-CcccHHHHHHHHH-HHHhHhcc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEI-HKENLLDAEEQLR-FLLHFMTG 570 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~-~~~~~~~~~~~l~-~~~~~l~g 570 (983)
|||++|+++.+++|++.||.++.+++ ..++.++|+|+|++|++||||+.+..+ .+++... ..+. .+.|.|+|
T Consensus 10 mkI~~i~~~~~~~pl~~p~~~s~~~~----~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~--~~i~~~l~p~liG 83 (392)
T 3ddm_A 10 ITPARVRAHVFRYPVSTPVKTSFGTM----HDRPAVLVEVEDSDGAVGWGEVWCNFPACGAEHRA--RLVETVLAPLLTA 83 (392)
T ss_dssp BCCCEEEEEEEEEEC---------------CEEEEEEEEEECTTSCEEEEECCCCSSTTHHHHHH--HHHHHTHHHHHTT
T ss_pred CEEEEEEEEEEeccCCCcccCcCcee----ecceEEEEEEEECCCCEEEEEeccCCCCCchHHHH--HHHHHHHHHHhCC
Confidence 89999999999999999999998765 348899999999999999999953211 1222111 1223 58899999
Q ss_pred CcccccccccccCchh----hhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEE
Q 041113 571 AKISYFLPLLKGSFSS----WIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKI 646 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~ 646 (983)
+++.+++.++..+... ..+ .+ ..+...+|++|||+|||||+||.+|+|||+||||.. ++||+
T Consensus 84 ~d~~~~~~~~~~l~~~~~~~~~~--~g--~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~----------~~v~~ 149 (392)
T 3ddm_A 84 RAFADPAQAFAHLEARTAVLAIQ--TG--EPGPLAQAIAGLDIALCDLAARRAGQPLWAWLGGSG----------DRIGV 149 (392)
T ss_dssp SCBSSHHHHHHHHHHTTHHHHHH--HT--CHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTCSC----------CEEEE
T ss_pred CCcCCHHHHHHHHHhhhhhhhhh--cC--CcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCC----------CceeE
Confidence 9998877666433221 001 11 112457899999999999999999999999999975 67999
Q ss_pred EEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhccc
Q 041113 647 CALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD 726 (983)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~ 726 (983)
|++. ..++++.+++++++++||++||+|+|. ++++|+++|++||+++|+++.|++|+|++|++++|+++++.|++
T Consensus 150 y~~g---~~~e~~~~~a~~~~~~G~~~iKlK~g~--~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~ 224 (392)
T 3ddm_A 150 YASG---INPENPEDVVARKAAEGYRAFKLKVGF--DDARDVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGP 224 (392)
T ss_dssp EEEE---ECSSSHHHHHHHHHHHTCCCEEEECSS--CHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHHGG
T ss_pred Eeec---CCHHHHHHHHHHHHHcCCCEEEEecCC--CHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9873 237889999999999999999999997 79999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCC--C-hHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHH
Q 041113 727 CDLQYIEEPVQ--N-EEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQ 802 (983)
Q Consensus 727 ~~i~~iEeP~~--~-~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~ 802 (983)
+++.|||||++ + ++++++|++++++||++||++++..+ +..+++ ..+|++++|++++||++++++++++|+
T Consensus 225 ~~i~~iEeP~~~~d~~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~ 299 (392)
T 3ddm_A 225 AQLDWLEEPLRADRPAAEWAELAQAAPMPLAGGENIAGVAA-----FETALAARSLRVMQPDLAKWGGFSGCLPVARAVV 299 (392)
T ss_dssp GCCSEEECCSCTTSCHHHHHHHHHHCSSCEEECTTCCSHHH-----HHHHHHHTCEEEECCCTTTTTHHHHHHHHHHHHH
T ss_pred hCCCEEECCCCccchHHHHHHHHHhcCCCEEeCCCCCCHHH-----HHHHHHcCCCCEEEeCcchhCCHHHHHHHHHHHH
Confidence 99999999998 6 88899999999999999999998753 666654 457999999999999999999999999
Q ss_pred HcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCc-eeec----cCCCC
Q 041113 803 RHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPI-SICH----NSCRG 877 (983)
Q Consensus 803 ~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~-~~~~----~P~~p 877 (983)
++|++++ +|+++++|++++++|+++++||.. ...+.+++. .. ..+. |++.+|+ .+++ +|++|
T Consensus 300 ~~gi~~~-~h~~~~~i~~aa~~hl~aa~p~~~--~~~~~e~~~--------~~-~~~~-~~~~~~~~~~~~G~i~~p~~P 366 (392)
T 3ddm_A 300 AAGLRYC-PHYLGAGIGLQASAHLLAAVPGLA--SPGLLGVDA--------ND-NPLR-SLLSPALATLHEGRITLGGAP 366 (392)
T ss_dssp HTTCEEC-CEECSCHHHHHHHHHHHHHSCCSS--SCCEEEEES--------SC-CHHH-HTTCGGGGGCBTTEEECCSCS
T ss_pred HcCCEEE-ecCCchHHHHHHHHHHHHhCCCCC--CCceEEecC--------Cc-chHH-HhccCCcceeeCCEEECCCCC
Confidence 9999975 777999999999999999998620 101112211 11 1122 3667777 7773 99999
Q ss_pred eeeEEecchhhhhhhccccc
Q 041113 878 FVEASVAKATHILQNLQINN 897 (983)
Q Consensus 878 GlGv~~d~a~~~~~~~~~~~ 897 (983)
||||++| ++.++++..+.
T Consensus 367 GlGve~d--~~~l~~~~~~~ 384 (392)
T 3ddm_A 367 GLGVTPD--LAALRAACAAR 384 (392)
T ss_dssp BTSCCCC--HHHHHHHC---
T ss_pred cCCceeC--HHHHHHhhhhc
Confidence 9999999 88888887654
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-57 Score=514.48 Aligned_cols=356 Identities=17% Similarity=0.197 Sum_probs=283.0
Q ss_pred eeEeEEEEEEEEeeCCCCC-ccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHH-HHHhHhcc
Q 041113 493 CKICRMEYSLYRIQLCAPP-TSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLR-FLLHFMTG 570 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~-~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~-~~~~~l~g 570 (983)
|||++|+++.+++||+.|| .++.++. ..++.++|+|+||+|++||||+.+..... .-..+...++ .+.|.|+|
T Consensus 1 MkI~~i~~~~~~~Pl~~p~~~~a~~~~----~~~~~v~V~v~td~G~~G~GE~~~~~~~~-~~~~~~~~i~~~l~p~liG 75 (372)
T 3tj4_A 1 MKITAVEPFILHLPLTSESISDSTHSI----THWGVVGAKITTSDGIEGYGFTGTHAHLP-SDRLITSCISDCYAPLLLG 75 (372)
T ss_dssp CBEEEEEEEEEEEECC----------------EEEEEEEEEEETTSCEEEEEEEECCCHH-HHHHHHHHHHHTTHHHHTT
T ss_pred CEEEEEEEEEEEecCCCCccCCCcccc----CceeEEEEEEEECCCCEEEEeccCccccC-cHHHHHHHHHHHHHHHhCC
Confidence 7999999999999999999 8888754 44889999999999999999997654111 0122344454 68999999
Q ss_pred CcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEee
Q 041113 571 AKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALI 650 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~ 650 (983)
+++.+++.++..+.....+ .+....+...+|++|||+|||||+||.+|+|||+||||.. +++||+|++.
T Consensus 76 ~d~~~~~~~~~~l~~~~~~--~~~g~~g~~~~A~said~AlwDl~gk~~g~Pv~~llGg~~---------~~~v~~y~s~ 144 (372)
T 3tj4_A 76 EDASDHSRLWTKLARYPSL--QWVGRAGITHLALAAVDVALWDIKAKKAGVPLWHYLGGAR---------TAGVEAYNTD 144 (372)
T ss_dssp SBTTCHHHHHHHHHTCHHH--HTTCSSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCS---------CSCEEEEECT
T ss_pred CChhhHHHHHHHHHHhhHh--hcCCcccHHHHHHHHHHHHHHHHhccccCCcHHHHcCCCC---------CCCeEEEEec
Confidence 9998876665432211111 1111124578999999999999999999999999999986 4569999873
Q ss_pred c--CCCCHHHHHHHHHHhhhc-CCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccC
Q 041113 651 D--SNKSPVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727 (983)
Q Consensus 651 ~--~~~~~~~~~~~~~~~~~~-G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~ 727 (983)
. ...+++++.+++++++++ ||++||+|+|. .++++|++++++||+++|+++.|++|+|++||+++|+++++.|+++
T Consensus 145 ~~~~~~~~~~~~~~a~~~~~~~G~~~~K~Kvg~-~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~ 223 (372)
T 3tj4_A 145 IGWLSFTLEDLLAGSARAVEEDGFTRLKIKVGH-DDPNIDIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDL 223 (372)
T ss_dssp TCCTTSCHHHHHHHHHHHHHTTCCCEEEEECCC-SSHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTS
T ss_pred CCccCCCHHHHHHHHHHHHHccCCCEEEEcCCC-CCHHHHHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhc
Confidence 2 234899999999999999 99999999996 3789999999999999999999999999999999999999999999
Q ss_pred CCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHc
Q 041113 728 DLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRH 804 (983)
Q Consensus 728 ~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~ 804 (983)
++.|||||++ +++++++|++++++||++||++++..+ +..+++. .+|++|+|++++||++++++++++|+++
T Consensus 224 ~i~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~ 298 (372)
T 3tj4_A 224 DIYWFEEPLWYDDVTSHARLARNTSIPIALGEQLYTVDA-----FRSFIDAGAVAYVQPDVTRLGGITEYIQVADLALAH 298 (372)
T ss_dssp CEEEEESCSCTTCHHHHHHHHHHCSSCEEECTTCCSHHH-----HHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHT
T ss_pred CCCEEECCCCchhHHHHHHHHhhcCCCEEeCCCccCHHH-----HHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHc
Confidence 9999999998 788999999999999999999998753 5666554 4799999999999999999999999999
Q ss_pred CCcEEeCC--CCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCe
Q 041113 805 GKMAVVSA--AFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGF 878 (983)
Q Consensus 805 gi~~~~~~--~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pG 878 (983)
|+++++|+ +.+ +++|++++++|+. . .+ + ..+ .+|++.+|+.+++ +|++||
T Consensus 299 gi~~~~h~g~~~~------~~~~l~aa~~~~~--~---~e----------~--~~~-~~~~~~~~~~~~~G~i~~p~~PG 354 (372)
T 3tj4_A 299 RLPVVPHAGEMSQ------VHVHLSYWHPAST--I---LE----------Y--IPW-IKDHFEEPIHVRDGVYKRPEQPG 354 (372)
T ss_dssp TCCBCCCCTTTTT------THHHHHHHCTTBC--C---EE----------E--CCS-SGGGBSSCCCEETTEECCCCSSB
T ss_pred CCEEEecCchHHH------HHHHHhhhCCCCc--e---ee----------e--chH-HHHhccCCCceeCCEEECCCCCC
Confidence 99988877 655 4789999998641 1 11 1 122 3466677888874 999999
Q ss_pred eeEEecchhhhhhhcccc
Q 041113 879 VEASVAKATHILQNLQIN 896 (983)
Q Consensus 879 lGv~~d~a~~~~~~~~~~ 896 (983)
||+++| ++.+++++..
T Consensus 355 lGv~~d--~~~l~~~~~~ 370 (372)
T 3tj4_A 355 ASTTPL--AESFTRYGKA 370 (372)
T ss_dssp CSCCBC--HHHHHHHEEC
T ss_pred CCCcCC--HHHHHHhhhc
Confidence 999999 8888887643
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-57 Score=518.23 Aligned_cols=352 Identities=20% Similarity=0.219 Sum_probs=297.2
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC---cCcccHHHHHHHHHH-HHhH
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQLRF-LLHF 567 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~---~~~~~~~~~~~~l~~-~~~~ 567 (983)
+|||++|+++.+++|++.||.++.+.+ +.++.++|+|+|++|++||||+.+.+ +.+++...+...++. +.|.
T Consensus 19 ~mkI~~i~~~~~~~pl~~p~~~s~~~~----~~~~~v~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~ 94 (386)
T 1wue_A 19 HMNIQSIETYQVRLPLKTPFVTSYGRL----EEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLVTERFIIQQHLIPL 94 (386)
T ss_dssp CCCEEEEEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEEETTSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTHHHH
T ss_pred cCEEEEEEEEEEecccCCCccccceEE----ecCcEEEEEEEECCCCEEEEEeecCCCCcccCCcHHHHHHHHHHHHHHH
Confidence 389999999999999999999888754 44889999999999999999998643 456776666666665 7899
Q ss_pred hccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEE
Q 041113 568 MTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKIC 647 (983)
Q Consensus 568 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~ 647 (983)
|+|+++.+...++.. +.. + ...++|++|||+||||++||..|+|||+||||. +++||+|
T Consensus 95 l~G~d~~~~~~l~~~-----l~~-~-----~g~~~A~~aid~AlwDl~~k~~g~Pl~~llGg~----------~~~v~~~ 153 (386)
T 1wue_A 95 LLTEAIEQPQEVSTI-----FEE-V-----KGHWMGKAALETAIWDLYAKRQQKSLTEFFGPT----------RRKIPVG 153 (386)
T ss_dssp HTTSCCCSTHHHHHH-----GGG-S-----CSCHHHHHHHHHHHHHHHHHHTTSBGGGGSSSC----------CSEEECC
T ss_pred HcCCCccCHHHHHHH-----HHH-c-----cCchHHHHHHHHHHHHHHHHHhCCcHHHHhCCC----------CCeeEee
Confidence 999988765444321 111 1 113789999999999999999999999999994 3689999
Q ss_pred EeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccC
Q 041113 648 ALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727 (983)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~ 727 (983)
++++...+++++.+++++++++||++||+|+|. ++|+++|++||+++ +++.|++|+|++|+.++| ++++.|++|
T Consensus 154 ~~~g~~~~~~~~~~~a~~~~~~G~~~~KiKvg~----~~d~~~v~avr~a~-~~~~l~vDaN~~~~~~~a-~~~~~l~~~ 227 (386)
T 1wue_A 154 ISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRP----GYDVEPVALIRQHF-PNLPLMVDANSAYTLADL-PQLQRLDHY 227 (386)
T ss_dssp EEECCCSCHHHHHHHHHHHHHTTCSCEEEECBT----TBSHHHHHHHHHHC-TTSCEEEECTTCCCGGGH-HHHHGGGGS
T ss_pred EEecCCCCHHHHHHHHHHHHHhhhheEEEeeCc----HHHHHHHHHHHHhC-CCCeEEEeCCCCCCHHHH-HHHHHHHhC
Confidence 887534579999999999999999999999973 56899999999999 899999999999999999 999999999
Q ss_pred CCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHc
Q 041113 728 DLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRH 804 (983)
Q Consensus 728 ~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~ 804 (983)
++.|||||++ |++++++|++++++||++||++++.. .+..+++. .+|++|+|++++||++++++++++|+++
T Consensus 228 ~i~~iEqP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~-----~~~~~i~~~a~d~i~ik~~~~GGit~~~~i~~~A~~~ 302 (386)
T 1wue_A 228 QLAMIEQPFAADDFLDHAQLQRELKTRICLDENIRSLK-----DCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQEN 302 (386)
T ss_dssp CCSCEECCSCTTCSHHHHHHHTTCSSCEEECTTCCSHH-----HHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHT
T ss_pred CCeEEeCCCCcccHHHHHHHHHhcCCCEEeCCccCCHH-----HHHHHHHcCCCCEEEEchhhhCCHHHHHHHHHHHHHC
Confidence 9999999998 78999999999999999999999865 36666654 4799999999999999999999999999
Q ss_pred CCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCcc-chhcccccCCCCCceeec----cCCCCee
Q 041113 805 GKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLG-TYQWLKEDVTTDPISICH----NSCRGFV 879 (983)
Q Consensus 805 gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~d~~~~p~~~~~----~P~~pGl 879 (983)
|++++++|++||+|+.++++|+| +++|.. ....++ +..++.+|++.+|+.+++ +|++|||
T Consensus 303 gi~~~~~~~~es~i~~aa~~hla-a~~~~~--------------~~~~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGl 367 (386)
T 1wue_A 303 DLLVWLGGMFESGVGRALNLQFA-SQPTFS--------------FPGDISATERYFYEDIITEPFILEQGTMTVPQGLGI 367 (386)
T ss_dssp TCEEEECCCCCCHHHHHHHHHHH-TSTTCC--------------SCCSCCCGGGTBSCCSBSSCCCEETTEEECCCSSBT
T ss_pred CCeEEECCCcccHHHHHHHHHHH-hCCCCC--------------cccccCchhhhhhhccccCCcEEECCEEECCCCCcC
Confidence 99999999999999999999997 567431 111222 235678888888988874 8999999
Q ss_pred eEEecchhhhhhhcccc
Q 041113 880 EASVAKATHILQNLQIN 896 (983)
Q Consensus 880 Gv~~d~a~~~~~~~~~~ 896 (983)
|+++| ++.++++.+.
T Consensus 368 Gv~~d--~~~l~~~~~~ 382 (386)
T 1wue_A 368 GVTLS--QTNLLKYSQY 382 (386)
T ss_dssp CCCBC--HHHHHHHEEE
T ss_pred CceeC--HHHHhhhhee
Confidence 99999 8888887754
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-57 Score=518.51 Aligned_cols=353 Identities=15% Similarity=0.119 Sum_probs=285.6
Q ss_pred cccCCccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHH-
Q 041113 485 TISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRF- 563 (983)
Q Consensus 485 ~~~~~~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~- 563 (983)
++.-+|++|||++|+++.++ | .++.++|||+||+|++||||+.+.. .. ..+...++.
T Consensus 15 ~~~~~~~~mkIt~v~~~~~~-----~-------------~~~~v~V~v~td~Gi~G~GE~~~~~-~~---~~~~~~i~~~ 72 (424)
T 3v3w_A 15 TENLYFQSMKIVDAKVIVTC-----P-------------GRNFVTLKIVTDQGIYGIGDATLNG-RE---KSVVSYLEDY 72 (424)
T ss_dssp --------CCEEEEEEEEEC-----S-------------SSCEEEEEEEETTSCEEEEECCCTT-CH---HHHHHHHHHT
T ss_pred ccccCCCCCEEEEEEEEEEc-----C-------------CCCEEEEEEEECCCCEEEEeccCCC-Ch---HHHHHHHHHH
Confidence 45566888999999987652 1 0367899999999999999987542 11 234455655
Q ss_pred HHhHhccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccce
Q 041113 564 LLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTS 643 (983)
Q Consensus 564 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~ 643 (983)
+.|.|+|+++.+++.++..++ ............+|++|||+|||||+||.+|+|||+||||.. +++
T Consensus 73 l~p~LiG~dp~~ie~i~~~~~-----~~~~~~~g~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLGG~~---------r~~ 138 (424)
T 3v3w_A 73 LIPVLIGRDPQQIEDIWQFFY-----RGAYWRRGPVGMTALAAIDVALWDIKAKLANMPLYQLLGGKS---------RER 138 (424)
T ss_dssp HHHHHTTSCTTCHHHHHHHHH-----HHTSSCCCHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHTCCS---------CSS
T ss_pred HHHHhcCCChhhHHHHHHHHH-----hccccCCCchHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCcC---------CCc
Confidence 999999999998776664322 111111223467899999999999999999999999999986 578
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC----------------------C---------ChHHHHHHHH
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR----------------------A---------DPIKDAEVIQ 692 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~----------------------~---------~~~~d~~~v~ 692 (983)
|++|+++. ..+++++++++++++++||++||+|+|.+ . +++.|+++|+
T Consensus 139 v~~y~~~~-~~~~e~~~~~a~~~~~~Gf~~iKlKvG~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~v~ 217 (424)
T 3v3w_A 139 ILSYTHAN-GKDLDSTLEAVRKAKDKGYKAIRVQCGIPGIAKTYGVSTNTKSYEPADADLPSVEVWSTEKYLNYIPDVFA 217 (424)
T ss_dssp EEEEEEEE-ESSHHHHHHHHHHHHHTTCSEEEEEECCTTCSCCTTCC-----CCSCCBSSCCEEEECHHHHHHHHHHHHH
T ss_pred eeEEEeCC-CCCHHHHHHHHHHHHHcCCCEEEEeccCccccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 99998763 46899999999999999999999999841 0 1467899999
Q ss_pred HHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHH
Q 041113 693 EVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNML 770 (983)
Q Consensus 693 ~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~ 770 (983)
+||+++|+++.|++|+|++||+++|+++++.|+++++.|||||++ +++++++|++++++||++||++.+..+ +
T Consensus 218 avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~ 292 (424)
T 3v3w_A 218 AVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYHLFWMEDAVPAENQESFKLIRQHTTTPLAVGEVFNSIHD-----C 292 (424)
T ss_dssp HHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECCSCCSSTTHHHHHHHHCCSCEEECTTCCSGGG-----T
T ss_pred HHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCEEECCCChHhHHHHHHHHhhCCCCEEEccCcCCHHH-----H
Confidence 999999999999999999999999999999999999999999998 788999999999999999999999875 4
Q ss_pred HhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhchhhhhhhhhhccccCCCC
Q 041113 771 EKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPP 848 (983)
Q Consensus 771 ~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~ 848 (983)
..+++. .+|++++|++++||++++++++++|+++|+++++|++. +|+|++++++||++++||+. . .++
T Consensus 293 ~~~i~~ga~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~ig~aA~~hlaaa~pn~~--~---~e~----- 362 (424)
T 3v3w_A 293 RELIQNQWIDYIRTTIVHAGGISQMRRIADFASLFHVRTGFHGATDLSPVCMGAALHFDYWVPNFG--I---QEH----- 362 (424)
T ss_dssp HHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEEEECCCTTSCHHHHHHHHHHHHHCTTEE--E---EEC-----
T ss_pred HHHHHcCCCCeEeecchhcCCHHHHHHHHHHHHHcCCEEEecCCCcccHHHHHHHHHHHHhCCCcc--e---Eee-----
Confidence 555544 47999999999999999999999999999999988887 79999999999999999642 1 111
Q ss_pred CccCccchhcccccCCCCCceeec----cCCCCeeeEEecchhhhhhhcccc
Q 041113 849 VAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEASVAKATHILQNLQIN 896 (983)
Q Consensus 849 ~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~ 896 (983)
.....+.+|++.+++.+++ +|++|||||++| ++.++++.+.
T Consensus 363 -----~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGveld--~~~l~~~~~~ 407 (424)
T 3v3w_A 363 -----MAHSEQMNAVFPHAYTFNDGYFTPGEKPGHGVDID--EKLAAQYPYK 407 (424)
T ss_dssp -----CCCCHHHHHHSCBCCEEETTEEECCSSSBTSBCCC--HHHHTTSCCC
T ss_pred -----cCcchhhHhhcCCCceeeCCEEECCCCCCCCcccC--HHHHHhccCC
Confidence 1112234566677888874 999999999999 8888888765
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-57 Score=514.93 Aligned_cols=354 Identities=20% Similarity=0.230 Sum_probs=290.5
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccC
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGA 571 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~ 571 (983)
.|||++|+++.+++| ..|+.++.+.+. ...+.++|||+||+ ++||||+.+. + .+...++.+.|.|+|+
T Consensus 26 ~mkIt~i~~~~v~~p-~~p~~~~~g~~~---~~~~~~~V~v~td~-~~G~GE~~g~----~---~~~~~i~~l~p~LiG~ 93 (445)
T 3va8_A 26 RSIIKEIVITPVAFH-DMPLLNSVGVHE---PFALRSIIEIITED-SYGLGESYGD----S---AHLDRLQKAADKIKGL 93 (445)
T ss_dssp HTBCCEEEEEEEEEE-CCCBEETTEECC---SEEEEEEEEEECSS-CEEEEEEECC----H---HHHHHHHHHHHHHTTS
T ss_pred CCEEEEEEEEEEecC-CcccccccCccc---CceeEEEEEEEECC-CEEEEecCCc----H---HHHHHHHHHHHHHCCC
Confidence 479999999999999 789888876541 12567899999999 9999998642 2 2345567899999999
Q ss_pred cccccccccccCchhhhh-h---hcCCCCCc------chhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCcccccccccc
Q 041113 572 KISYFLPLLKGSFSSWIW-S---TLGIPACE------IFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRS 641 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~-~---~~~~~~~~------~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~ 641 (983)
++.+++.++..+...... . ..| ..+ ...+|++|||+|||||+||.+|+|||+||||.. +
T Consensus 94 d~~~ie~i~~~l~~~~~~~~~~~~~G--~~G~~~~~~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLGG~~---------r 162 (445)
T 3va8_A 94 SVYSTNVIYQRCVESLRNDTNTGGDG--MGGMVVTASVADKVFSPFEVACLDLQGKLAGISVSDLLGGRV---------R 162 (445)
T ss_dssp BTTCHHHHHHHHHHHTTTCCC--CCS--STTSSCCSCHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCS---------S
T ss_pred ChhHHHHHHHHHHHhhhccccccccc--ccCccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC---------C
Confidence 999877766432211000 0 011 111 456899999999999999999999999999975 5
Q ss_pred ceeEEEEeec---------------CCCCHHHHHHHHHHhhhc-CCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEE
Q 041113 642 TSIKICALID---------------SNKSPVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELR 705 (983)
Q Consensus 642 ~~i~~~~~~~---------------~~~~~~~~~~~~~~~~~~-G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~ 705 (983)
++|++|+++. ...+++++++++++++++ ||++||+|+|. .++++|+++|++||+++ |++.|+
T Consensus 163 ~~v~~~a~~~y~~~~~~g~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~-~~~~~Di~~v~avRea~-~~~~L~ 240 (445)
T 3va8_A 163 DSVQYSAYLFYKWGGHPGDEDDEYGPALDPEGVVKQAKKIIDEYGFKAIKLKGGV-FPPADEVAAIKALHKAF-PGVPLR 240 (445)
T ss_dssp SEEEBCEEEECBCSSSTTSCCCTTCCBCSHHHHHHHHHHHHHHHCCSCEEEECSS-SCHHHHHHHHHHHHHHS-TTCCEE
T ss_pred CeEEEeeeecccccccccccccccccCCCHHHHHHHHHHHHHhcCCCEEEEccCC-CCHHHHHHHHHHHHHhC-CCCcEe
Confidence 7888865431 116899999999999875 99999999997 37899999999999999 999999
Q ss_pred EEcCCCCCHHHHHHHHhhcccCCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEc
Q 041113 706 VDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIK 784 (983)
Q Consensus 706 vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k 784 (983)
||+|++|++++|+++++.|+++ +.|||||+++++++++|++++++|||+||++++..+ +..+++. .+|++|+|
T Consensus 241 vDaN~~w~~~~Ai~~~~~L~~~-l~~iEeP~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~i~~~a~div~~d 314 (445)
T 3va8_A 241 LDPNAAWTVETSKWVAKELEGI-VEYLEDPAGEIEGMAAVAKEASMPLATNMAVVAFDH-----LPPSILQDAVQVILSD 314 (445)
T ss_dssp EECTTCBCHHHHHHHHHHTTTT-CSEEESCBSHHHHHHHHHTTCSSCEEESSSCCSGGG-----HHHHHHTTCCSEEEEC
T ss_pred eeCCCCCCHHHHHHHHHHHhhh-cCeEeecCcCHHHHHHHHHcCCCCEEeCCccCCHHH-----HHHHHHcCCCCEEEec
Confidence 9999999999999999999999 999999999899999999999999999999999875 5555554 47999999
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccc-hhccc--c
Q 041113 785 PSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGT-YQWLK--E 861 (983)
Q Consensus 785 ~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~--~ 861 (983)
++++|||+++++++++|+++|+++++|++.+++|++++++||++++||+. + . ++. ..|+. +
T Consensus 315 ~~~~GGitea~kia~lA~~~gv~v~~h~~~e~~I~~aa~~hlaaa~p~~~----------~----~--~d~~~~~~~~~~ 378 (445)
T 3va8_A 315 HHFWGGLRKSQTLASICATWGLRLSMHSNSHLGISLAAMTHLASATPNLD----------Y----A--CDTHWPWKRRDE 378 (445)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHHHTCTTBC----------S----C--BCCCGGGSCTTC
T ss_pred chhcCCHHHHHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHHHHhCCCCc----------e----e--eeccchhhhccc
Confidence 99999999999999999999999999999999999999999999999641 1 1 122 23444 3
Q ss_pred cCC-CCCceeec----cCCCCeeeEEecchhhhhhhcc
Q 041113 862 DVT-TDPISICH----NSCRGFVEASVAKATHILQNLQ 894 (983)
Q Consensus 862 d~~-~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~ 894 (983)
|++ .+|+.+++ +|++|||||++| ++.++++.
T Consensus 379 d~~~~~~~~~~~G~i~vp~~PGLGveld--~~~l~~~~ 414 (445)
T 3va8_A 379 DVVIEGALKWKDGGVIVPSGPGLGVELD--RERLAKLH 414 (445)
T ss_dssp CSBCTTSCCEETTEEECCCSSBTSCCBC--HHHHHHHH
T ss_pred ccccCCCceEECCEEECCCCCcCCCccC--HHHHHHHH
Confidence 554 56888874 999999999999 77776654
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-57 Score=516.90 Aligned_cols=357 Identities=14% Similarity=0.148 Sum_probs=284.4
Q ss_pred ccCCccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHH--
Q 041113 486 ISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRF-- 563 (983)
Q Consensus 486 ~~~~~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~-- 563 (983)
.++++ +|||++|+++.+++|+ .. +.++.++|||+||+|++||||+.+.+ +. +...+..
T Consensus 4 ~~~~~-~mkI~~i~~~~v~~p~------~~-------~~~~~~~V~v~td~G~~G~GE~~~~~---~~---~~~~~~~~~ 63 (394)
T 3mkc_A 4 ALNPA-VAPIKSIEFIPVNYQA------SN-------WSQNTVVVKVTDENGVYGLGEADGSP---DA---ILAYANIET 63 (394)
T ss_dssp CCCTT-CCCEEEEEEEEEEEC-----------------CEEEEEEEEEETTSCEEEEEECSCH---HH---HHHHHTCCC
T ss_pred ccCCC-CCeEEEEEEEEEecCC------CC-------CCccEEEEEEEECCCCeEEEEecCcH---HH---HHHHHhccc
Confidence 34443 4899999999999987 11 23789999999999999999997542 11 1222222
Q ss_pred -------HHhHhccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccc
Q 041113 564 -------LLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEE 636 (983)
Q Consensus 564 -------~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~ 636 (983)
+.|.|+|+++.+++.++..++....+. + ..+...+|++|||+|||||+||.+|+|||+||||..
T Consensus 64 ~~~~~~~l~p~liG~dp~~~e~~~~~l~~~~~~~--g--~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~----- 134 (394)
T 3mkc_A 64 EHKWLTNITEKAIGRLPIEINAIWDAMYDATQWQ--G--MRGLGMFALSGIDMALYDLAGKQLGVPAYQLLGGTN----- 134 (394)
T ss_dssp CBTTBCCTTTTTTTSCTTCHHHHHHHHHHHTHHH--H--SSTHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCS-----
T ss_pred chhhHHHHHHHhCCCChhHHHHHHHHHHHhhhhc--C--CchHHHHHHHHHHHHHHHHhHhHcCCcHHHHcCCCc-----
Confidence 789999999988776664332211111 1 123467899999999999999999999999999986
Q ss_pred cccccceeEEEEeecC----CCCHH----HHHHHHHHhhhcCCCEEEE-eccCC-CChHHHHHHHHHHHHHcCCCcEEEE
Q 041113 637 ISKRSTSIKICALIDS----NKSPV----EVASIATTLVEEGFTAIKL-KVARR-ADPIKDAEVIQEVRKKVGHRIELRV 706 (983)
Q Consensus 637 ~~~~~~~i~~~~~~~~----~~~~~----~~~~~~~~~~~~G~~~~Ki-Kig~~-~~~~~d~~~v~~vr~~~g~~~~l~v 706 (983)
+++|++|+++.. ..+++ ++.+++++++++||++||+ |+|.. .++++|+++|++||+++|+++.|++
T Consensus 135 ----r~~v~~y~s~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~~k~g~~~~~~~~d~e~v~avR~a~G~d~~l~v 210 (394)
T 3mkc_A 135 ----KDKVHPYLTLYPAIPVDASLDVAIKGYAPLLEKAKAHNIRAVKVCVPIKADWSTKEVAYYLRELRGILGHDTDMMV 210 (394)
T ss_dssp ----CSEECCEEECCCSCC-CCCHHHHHHHHHHHHHHHHHTTCSEEEEECCTTCCCCHHHHHHHHHHHHHHHCSSSEEEE
T ss_pred ----CCeeEEEEecCCcCCCCcchhhhHHHHHHHHHHHHHcCCCEEEeCccCCCccCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 578999988641 22345 6777899999999999999 99931 2689999999999999999999999
Q ss_pred EcCCCC-CHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEE
Q 041113 707 DANRNW-TYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIV 782 (983)
Q Consensus 707 DaN~~~-~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~ 782 (983)
|+|++| +.++|+++++.|+++++.|||||++ +++++++|++++++||++||++.+..+ +..+++. .+|+++
T Consensus 211 DaN~~~~~~~~A~~~~~~L~~~~i~~iEeP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~l~~~~~d~v~ 285 (394)
T 3mkc_A 211 DYLYRFTDWYEVARLLNSIEDLELYFAEATLQHDDLSGHAKLVENTRSRICGAEMSTTRFE-----AEEWITKGKVHLLQ 285 (394)
T ss_dssp ECTTCCCCHHHHHHHHHHTGGGCCSEEESCSCTTCHHHHHHHHHHCSSCBEECTTCCHHHH-----HHHHHHTTCCSEEC
T ss_pred eCCCCCCCHHHHHHHHHHhhhcCCeEEECCCCchhHHHHHHHHhhCCCCEEeCCCCCCHHH-----HHHHHHcCCCCeEe
Confidence 999999 9999999999999999999999998 788999999999999999999998753 6666654 479999
Q ss_pred EcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhccccc
Q 041113 783 IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKED 862 (983)
Q Consensus 783 ~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d 862 (983)
+|++++||++++++++++|+++|++++.|+ ++++|++++++||++++||+. . .+++. .. + ...++.+|
T Consensus 286 ~k~~~~GGit~~~~ia~~A~~~gi~~~~h~-~~s~i~~aa~~hlaaa~p~~~--~---~e~~~--~~---~-~~~~~~~~ 353 (394)
T 3mkc_A 286 SDYNRCGGLTELRRITEMATANNVQVMPHN-WKTGITSAAAIHYQFAVGNAP--Y---FEYVH--PE---F-CDGELRKY 353 (394)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHTTCEECCCC-CSCHHHHHHHHHHHHHTCCSS--C---CEECC--GG---G-CCCHHHHH
T ss_pred cCccccCCHHHHHHHHHHHHHcCCEEeecC-CCcHHHHHHHHHHHHhCCCce--e---EEeec--cc---c-ccchhHHh
Confidence 999999999999999999999999987655 699999999999999999641 1 11100 00 0 01234567
Q ss_pred CCCCCceeec----cCCCCeeeEEecchhhhhhhcc
Q 041113 863 VTTDPISICH----NSCRGFVEASVAKATHILQNLQ 894 (983)
Q Consensus 863 ~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~ 894 (983)
++.+|+.+++ +|++|||||++| ++.+++++
T Consensus 354 ~~~~~~~~~~G~i~~p~~PGlGve~d--~~~l~~~~ 387 (394)
T 3mkc_A 354 LVTPEAELVDGGFAKPTAPGLGIDLN--QEFLASLE 387 (394)
T ss_dssp SEECCCCCBTTBEECCCSSBTCCEEC--HHHHHTC-
T ss_pred hccCCCcccCCEEECCCCCCCCceeC--HHHHHhhh
Confidence 7778888874 999999999999 88887776
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-57 Score=511.82 Aligned_cols=346 Identities=25% Similarity=0.330 Sum_probs=299.6
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHHH-HHhHhcc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLRF-LLHFMTG 570 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~~-~~~~l~g 570 (983)
|||++|+++.+++|++.||.++.+.+ ..++.++|+|+|++|++||||+.+.+ +++++...+...++. +.|.|+|
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~----~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~l~~~l~~~l~g 76 (366)
T 1tkk_A 1 MKIIRIETSRIAVPLTKPFKTALRTV----YTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLG 76 (366)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEE----EEEEEEEEEEEETTSCEEEEEECCCTTTTCCCHHHHHHHHHHTHHHHHTT
T ss_pred CEEEEEEEEEEEccccCCEEecCeeE----EEeeEEEEEEEECCCCEEEEEecCCCCcCCCCHHHHHHHHHHHHHHHHcC
Confidence 69999999999999999999888654 45889999999999999999998865 356677777777877 9999999
Q ss_pred CcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEee
Q 041113 571 AKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALI 650 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~ 650 (983)
+++.++..++.. ++..+ ...++|++|||+||||++||.+|+|||+||||. +++|++|+++
T Consensus 77 ~~~~~~~~~~~~-----l~~~~-----~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~----------~~~v~~~~~~ 136 (366)
T 1tkk_A 77 KSLAGYEAILHD-----IQHLL-----TGNMSAKAAVEMALYDGWAQMCGLPLYQMLGGY----------RDTLETDYTV 136 (366)
T ss_dssp CBGGGHHHHHHH-----HHHSS-----SSCHHHHHHHHHHHHHHHHHHTTSBHHHHHTCC----------CSEEEBCEEE
T ss_pred CCcccHHHHHHH-----HHHHh-----cCCHHHHHHHHHHHHHHHHHHcCCCHHHHhCCC----------CCceeeeEEe
Confidence 998876555431 11111 124689999999999999999999999999994 3679988877
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhccc--CC
Q 041113 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD--CD 728 (983)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~--~~ 728 (983)
+ ..+++++.+.+++++++||++||+|+|. .+++.|+++|++||+++|+++.|++|+|++||.++|+++++.|++ ++
T Consensus 137 ~-~~~~~~~~~~a~~~~~~Gf~~iKik~g~-~~~~~d~~~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~~ 214 (366)
T 1tkk_A 137 S-VNSPEEMAADAENYLKQGFQTLKIKVGK-DDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLG 214 (366)
T ss_dssp C-SCCHHHHHHHHHHHHHHTCCEEEEECCS-SCHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHTTCC
T ss_pred c-CCCHHHHHHHHHHHHHcCCCeEEEEeCC-CCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCC
Confidence 4 4689999999999999999999999996 378999999999999999999999999999999999999999999 99
Q ss_pred CceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHcC
Q 041113 729 LQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRHG 805 (983)
Q Consensus 729 i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~g 805 (983)
+.|||||++ +++++++|++++++||++||++++..+ +..+++ ..+|++++|++++||++++++++++|+++|
T Consensus 215 i~~iEqP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~-----~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g 289 (366)
T 1tkk_A 215 IELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQ-----AFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACG 289 (366)
T ss_dssp EEEEECCSCTTCHHHHHHHHHHCSSCEEECTTCCSHHH-----HHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHT
T ss_pred ceEEECCCCcccHHHHHHHHhhCCCCEEEcCCCCCHHH-----HHHHHHhCCCCEEEeehhhhcCHHHHHHHHHHHHHcC
Confidence 999999998 788999999999999999999988653 555554 457999999999999999999999999999
Q ss_pred CcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeE
Q 041113 806 KMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEA 881 (983)
Q Consensus 806 i~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv 881 (983)
+++++||++||++++++++|++++++|+. .+++++..++.+|++.+|+.+++ +|++||||+
T Consensus 290 ~~~~~~~~~es~i~~~a~~~laaa~~~~~---------------~~el~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv 354 (366)
T 1tkk_A 290 VECMVGSMIETKLGITAAAHFAASKRNIT---------------RFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGI 354 (366)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHHHCTTEE---------------EECCCGGGGBSSCCEEESCEEETTEEECCCSSBTCE
T ss_pred CcEEecCccccHHHHHHHHHHHHcCCCCc---------------eecccchhhcccccccCCceEECCEEECCCCCccce
Confidence 99999999999999999999999998641 12344555677888778888873 899999999
Q ss_pred Eec
Q 041113 882 SVA 884 (983)
Q Consensus 882 ~~d 884 (983)
++|
T Consensus 355 ~~d 357 (366)
T 1tkk_A 355 IGA 357 (366)
T ss_dssp EEE
T ss_pred Eec
Confidence 999
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-57 Score=515.42 Aligned_cols=349 Identities=14% Similarity=0.138 Sum_probs=285.7
Q ss_pred ccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHH-HHhHh
Q 041113 490 LSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRF-LLHFM 568 (983)
Q Consensus 490 ~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~-~~~~l 568 (983)
|+.|||++|+++.++ | + ..+.++|||+||+|++||||+.+.. .. ..+...++. +.|.|
T Consensus 24 ~~~mkIt~v~~~~~~-----~-----~-------~~~~v~V~v~td~Gi~G~GE~~~~~-~~---~~~~~~i~~~l~p~L 82 (422)
T 3tji_A 24 MTPVIIKNIECFITR-----P-----D-------RHNLVTVRVTTEQGITGHGCATFQQ-RP---LAVKTLVDEYLQPLM 82 (422)
T ss_dssp CCCCBEEEEEEEEEC-----S-----S-------SSCEEEEEEEETTSCCEEEECCCTT-SH---HHHHHHHHHTHHHHH
T ss_pred CCCcEEEEEEEEEEc-----C-----C-------CccEEEEEEEECCCCEEEEeccCCC-CH---HHHHHHHHHHHHHHh
Confidence 345899999987652 1 0 0367899999999999999987643 22 234455655 99999
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA 648 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~ 648 (983)
+|+++.+++.++..++ ............+|++|||||||||+||.+|+|||+||||.. +++|++|+
T Consensus 83 iG~dp~~ie~~~~~l~-----~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~---------r~~v~~y~ 148 (422)
T 3tji_A 83 IGRDANNIEDLWQMMN-----VNAYWRNGPLMNNAISGVDMALWDIKGQLAGMPLYQLFGGKS---------RDAIPAYS 148 (422)
T ss_dssp TTSBTTCHHHHHHHHH-----HTTSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCS---------SSCEEEEE
T ss_pred CCCCcccHHHHHHHHH-----HhhhccCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCC---------CCeEEEEE
Confidence 9999998776654322 111111223467899999999999999999999999999986 57899998
Q ss_pred eecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCC----------------------hHHHHHHHHHHHHHcCCCcEEEE
Q 041113 649 LIDSNKSPVEVASIATTLVEEGFTAIKLKVARRAD----------------------PIKDAEVIQEVRKKVGHRIELRV 706 (983)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~----------------------~~~d~~~v~~vr~~~g~~~~l~v 706 (983)
++. ..+++++++++++++++||++||+|+|.... ++.|+++|++||+++|+++.|++
T Consensus 149 ~~~-~~~~e~~~~~a~~~~~~G~~~iKlKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~v 227 (422)
T 3tji_A 149 HAS-GETLEALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALREKYGWKLHILH 227 (422)
T ss_dssp EEE-ESSHHHHHHHHHHHHHTTCSEEEEEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCSSSEEEE
T ss_pred EeC-CCCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 763 4789999999999999999999999986210 46789999999999999999999
Q ss_pred EcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEE
Q 041113 707 DANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVI 783 (983)
Q Consensus 707 DaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~ 783 (983)
|+|++|++++|+++++.|+++++.|||||++ +++.+++|++++++||++||++.+..+ +..+++. .+|++++
T Consensus 228 DaN~~~~~~~A~~~~~~Le~~~i~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~ll~~ga~d~v~~ 302 (422)
T 3tji_A 228 DVHERLFPQQAVQLAKQLEPFQPYFIEDILPPQQSAWLEQVRQQSCVPLALGELFNNPAE-----WHDLIVNRRIDFIRC 302 (422)
T ss_dssp ECTTCSCHHHHHHHHHHHGGGCCSEEECCSCGGGGGGHHHHHHHCCCCEEECTTCCSGGG-----THHHHHTTCCSEECC
T ss_pred ECCCCCCHHHHHHHHHHHHhhCCCeEECCCChhhHHHHHHHHhhCCCCEEEeCCcCCHHH-----HHHHHhcCCCCEEec
Confidence 9999999999999999999999999999998 788899999999999999999999875 4555544 5799999
Q ss_pred cCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhccccc
Q 041113 784 KPSVIGGFENAGLIARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKED 862 (983)
Q Consensus 784 k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d 862 (983)
|++++|||+++++++++|+++|+++++|++. +|+|++++++||++++||+. . .+ + .....+.+|
T Consensus 303 k~~~~GGit~~~kia~lA~a~gv~v~~h~~~~~s~Ig~aA~~hlaaa~pn~~--~---~e--~--------~~~~~~~~~ 367 (422)
T 3tji_A 303 HVSQIGGITPALKLAHLCQAFGVRLAWHGPGDMTPIGVAVNTHLNIHLHNAA--I---QE--F--------IPRSATTND 367 (422)
T ss_dssp CGGGGTSHHHHHHHHHHHHHTTCEECCCCCSSSCHHHHHHHHHHHHHCTTBC--C---EE--C--------CCCCHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHcCCEEEecCCCCccHHHHHHHHHHHHhCCCCc--e---Ee--c--------cCcchhhhh
Confidence 9999999999999999999999998888775 79999999999999999642 1 11 1 111123456
Q ss_pred CCCCCceeec----cCCCCeeeEEecchhhhhhhcccc
Q 041113 863 VTTDPISICH----NSCRGFVEASVAKATHILQNLQIN 896 (983)
Q Consensus 863 ~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~ 896 (983)
++.+++.+++ +|++|||||++| ++.++++.+.
T Consensus 368 ~~~~~~~~~~G~i~~p~~PGlGve~d--~~~l~~~~~~ 403 (422)
T 3tji_A 368 VFPGAPEVKEGFVYPPVQPGIGVGFN--EALALAHPVL 403 (422)
T ss_dssp HSTTCCCCBTTEECCCCSSBSCCCCC--HHHHHTSCCC
T ss_pred ccCCCceeECCEEECCCCCcCCCCcC--HHHHHhcccc
Confidence 6677777774 999999999999 8888898865
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-57 Score=512.79 Aligned_cols=356 Identities=19% Similarity=0.208 Sum_probs=304.1
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCc--C-cCcccHHHHHHHHHH-HHhHh
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL--E-IHKENLLDAEEQLRF-LLHFM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~--~-~~~~~~~~~~~~l~~-~~~~l 568 (983)
|||++|+++.+++|++.||.++.+.. ..++.++|+|+| +|++||||+.+. + +++++...+...++. +.|.+
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~----~~~~~~~V~v~t-~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l 75 (370)
T 1nu5_A 1 MKIEAISTTIVDVPTRRPLQMSFTTV----HKQSYVIVQVKA-GGLVGIGEGGSVGGPTWGSESAETIKVIIDNYLAPLL 75 (370)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEEE-TTEEEEEEECCSTTTTTSSCCHHHHHHHHHHTHHHHH
T ss_pred CEEEEEEEEEEEccccCCEEecceEE----EeceeEEEEEEE-CCEEEEEEeccCCCCcccCCCHHHHHHHHHHhhHHHH
Confidence 69999999999999999999888654 348899999999 999999999876 2 456666666666754 88999
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA 648 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~ 648 (983)
+|+++.++..++.. +.... ...++|++|||+||||+.||.+|+|||+||||.. +++|++|+
T Consensus 76 ~G~d~~~~~~~~~~-----l~~~~-----~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~---------~~~v~~~~ 136 (370)
T 1nu5_A 76 VGKDASNLSQARVL-----MDRAV-----TGNLSAKAAIDIALHDLKARALNLSIADLIGGTM---------RTSIPIAW 136 (370)
T ss_dssp TTSBTTCHHHHHHH-----HHHHC-----SSCHHHHHHHHHHHHHHHHHHTTCBHHHHHTCCS---------CSEEEBCE
T ss_pred cCCCcccHHHHHHH-----HHHHh-----cCCHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCc---------CCceEeeE
Confidence 99998876555432 12211 1246899999999999999999999999999975 46799987
Q ss_pred eecCCCCHHHHHHHHHHhhh-cCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccC
Q 041113 649 LIDSNKSPVEVASIATTLVE-EGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727 (983)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~-~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~ 727 (983)
+++ ..+++++.+.++++++ +||++||+|+|.+ +++.|++++++||+++|+++.|++|+|++||.++|+++++.|+++
T Consensus 137 ~~~-~~~~e~~~~~a~~~~~~~Gf~~iKik~g~~-~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~ 214 (370)
T 1nu5_A 137 TLA-SGDTARDIDSALEMIETRRHNRFKVKLGAR-TPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEA 214 (370)
T ss_dssp EEC-SSCHHHHHHHHHHHHHTTSCSEEEEECSSS-CHHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHH
T ss_pred Eec-CCCHHHHHHHHHHHHHhCCccEEEEecCCC-ChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 763 4689999999999999 9999999999973 688999999999999999999999999999999999999999999
Q ss_pred CCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHc
Q 041113 728 DLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRH 804 (983)
Q Consensus 728 ~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~ 804 (983)
++.|||||++ +++.++++++++++||++||++++.. .+..+++. .+|++++|++++||++++++++++|+++
T Consensus 215 ~i~~iEqP~~~~~~~~~~~l~~~~~ipIa~dE~~~~~~-----~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~ 289 (370)
T 1nu5_A 215 GVELVEQPVPRANFGALRRLTEQNGVAILADESLSSLS-----SAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAA 289 (370)
T ss_dssp TCCEEECCSCTTCHHHHHHHHHHCSSEEEESTTCCSHH-----HHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHH
T ss_pred CcceEeCCCCcccHHHHHHHHHhCCCCEEeCCCCCCHH-----HHHHHHHhCCCCEEEEchhhcCCHHHHHHHHHHHHHc
Confidence 9999999998 78899999999999999999998865 36666654 4799999999999999999999999999
Q ss_pred CCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeee
Q 041113 805 GKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVE 880 (983)
Q Consensus 805 gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlG 880 (983)
|+++++||++||+|++++++|++++++|+. ..+.++...++.+|++.+|+.+++ +|++||||
T Consensus 290 g~~~~~~~~~es~i~~aa~~hlaaa~~~~~--------------~~~e~~~~~~~~~d~~~~~~~~~~G~~~~p~~pGlG 355 (370)
T 1nu5_A 290 GISSYGGTMLDSTVGTAAALHVYATLPSLP--------------YGCELIGPWVLGDRLTQQDLEIKDFEVHLPLGSGLG 355 (370)
T ss_dssp TCEEEECCSSCCHHHHHHHHHHHTTSSCCT--------------TCBCCCHHHHBSSCSBSSCCCEETTEEECCCSSBTS
T ss_pred CCcEEecCCcchHHHHHHHHHHHhcCCCCC--------------cccccCchhhhccccccCCceEECCEEECCCCCCCC
Confidence 999999999999999999999999998631 111233344567888888888874 89999999
Q ss_pred EEecchhhhhhhccc
Q 041113 881 ASVAKATHILQNLQI 895 (983)
Q Consensus 881 v~~d~a~~~~~~~~~ 895 (983)
+++| ++.++++..
T Consensus 356 v~~d--~~~l~~~~~ 368 (370)
T 1nu5_A 356 VDLD--HDKVRHYTR 368 (370)
T ss_dssp CCBC--HHHHHHHBC
T ss_pred ceeC--HHHHhhccc
Confidence 9999 888877653
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-57 Score=513.51 Aligned_cols=355 Identities=19% Similarity=0.253 Sum_probs=304.9
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHHH-HHhHhcc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLRF-LLHFMTG 570 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~~-~~~~l~g 570 (983)
|||++|+++.+++|++.||.++.+.. ..++.++|+|+|++|++||||+.+.+ +++++...+...++. +.|.++|
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~----~~~~~~~v~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~i~~~l~~~l~g 76 (369)
T 2p8b_A 1 MKITAIHLYAIRLPLRNPFVISYGSY----SDMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFHTLKHTLTPALIG 76 (369)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEEETTSCEEEEEECCCHHHHSCCHHHHHHHHHHTHHHHHTT
T ss_pred CEEEEEEEEEEeccccCCeEecceeE----EeeeEEEEEEEECCCCEEEEEecCCCCcCCCCHHHHHHHHHHHHHHHHcC
Confidence 69999999999999999999887654 44889999999999999999998764 345666667777777 9999999
Q ss_pred CcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEee
Q 041113 571 AKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALI 650 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~ 650 (983)
+++.++..++.. +.... ...++|++|||+||||+.||.+|+|||+||||.. +++||+|.++
T Consensus 77 ~d~~~~~~~~~~-----l~~~~-----~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~---------~~~v~~~~~i 137 (369)
T 2p8b_A 77 QNPMNIEKIHDM-----MDNTI-----YGVPTAKAAIDIACFDIMGKKLNQPVYQLIGGRY---------HEEFPVTHVL 137 (369)
T ss_dssp CCTTCHHHHHHH-----HHHHC-----SCCHHHHHHHHHHHHHHHHHHTTSBGGGGTTCCC---------CSCEECCEEE
T ss_pred CCcccHHHHHHH-----HHHHh-----cCChHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC---------CCceeeeEEe
Confidence 998876555432 11211 1246899999999999999999999999999974 4678888877
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH-HHHhhcccCCC
Q 041113 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEAL-EFGFLIKDCDL 729 (983)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~-~~~~~l~~~~i 729 (983)
+ ..+++++.+.+++++++||++||+|+|. +++.|+++|++||+++|+++.|++|+|++|+.++|+ ++++.|+++++
T Consensus 138 ~-~~~~~~~~~~a~~~~~~Gf~~iKik~g~--~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~~l~~~~i 214 (369)
T 2p8b_A 138 S-IADPENMAEEAASMIQKGYQSFKMKVGT--NVKEDVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNI 214 (369)
T ss_dssp C-SCCHHHHHHHHHHHHHTTCCEEEEECCS--CHHHHHHHHHHHHHHHCTTSEEEEECTTTTBSHHHHHHHHHTSTTSCC
T ss_pred c-CCChHHHHHHHHHHHHcCcCEEEEEeCC--CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 4 4689999999999999999999999996 789999999999999999999999999999999999 99999999999
Q ss_pred ceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHcCC
Q 041113 730 QYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRHGK 806 (983)
Q Consensus 730 ~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi 806 (983)
.|||||++ +++.++++++++++||++||++.+.. .+..+++ ..+|++++|++++||++++++++++|+++|+
T Consensus 215 ~~iEqP~~~~d~~~~~~l~~~~~iPI~~dE~~~~~~-----~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~ 289 (369)
T 2p8b_A 215 DWIEQPVIADDIDAMAHIRSKTDLPLMIDEGLKSSR-----EMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGI 289 (369)
T ss_dssp SCEECCBCTTCHHHHHHHHHTCCSCEEESTTCCSHH-----HHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTC
T ss_pred cEEECCCCcccHHHHHHHHHhCCCCEEeCCCCCCHH-----HHHHHHHhCCCCEEEeecchhCCHHHHHHHHHHHHHcCC
Confidence 99999998 78889999999999999999998865 3555555 4579999999999999999999999999999
Q ss_pred cEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeEE
Q 041113 807 MAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEAS 882 (983)
Q Consensus 807 ~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~ 882 (983)
++++||++||++++++++|++++++|+. .+++++..++.+| .+|+.+++ +|++||||++
T Consensus 290 ~~~~~~~~es~i~~~a~~~laa~~~~~~---------------~~el~~~~~~~~~--~~~~~~~~G~~~~p~~PGlGv~ 352 (369)
T 2p8b_A 290 ECQVGSMVESSVASSAGFHVAFSKKIIT---------------SVELTGPLKFTKD--IGNLHYDVPFIRLNEKPGLGIE 352 (369)
T ss_dssp EEEECCSSCCHHHHHHHHHHHTTCTTEE---------------EECCCHHHHBSCC--SSCCCCBTTEECCCCCSBTCCC
T ss_pred cEEecCCCccHHHHHHHHHHHHcCCCCc---------------eeccCcchhcccc--CCCceeECCEEeCCCCCcCCCc
Confidence 9999999999999999999999998641 1224455566666 57787773 8999999999
Q ss_pred ecchhhhhhhccccc
Q 041113 883 VAKATHILQNLQINN 897 (983)
Q Consensus 883 ~d~a~~~~~~~~~~~ 897 (983)
+| ++.++++++..
T Consensus 353 ~d--~~~l~~~~~~~ 365 (369)
T 2p8b_A 353 IN--EDTLQELTVFQ 365 (369)
T ss_dssp CC--HHHHHHHEEEE
T ss_pred cC--HHHHhhceeee
Confidence 99 88888887654
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-57 Score=513.08 Aligned_cols=360 Identities=17% Similarity=0.200 Sum_probs=300.1
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC--cCcccHHHHHHHHHH-HHh-Hh
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE--IHKENLLDAEEQLRF-LLH-FM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~--~~~~~~~~~~~~l~~-~~~-~l 568 (983)
|||++|+++.+++|++.||.++.+.+ ..++.++|+|+|++|++||||+.+.+ +++++...+...++. +.| .|
T Consensus 3 MkI~~i~~~~~~~pl~~p~~~s~~~~----~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~i~~~l~~~~l 78 (397)
T 2qde_A 3 LKITKVEVIPISTPMKRAQLMRGATL----ARIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVL 78 (397)
T ss_dssp CCEEEEEEEEEEECCCC---------------EEEEEEEEEETTSCEEEEECCCCCTTTTCCCHHHHHHHHHHTHHHHTT
T ss_pred CEEEEEEEEEEeeeccCCeEeccceE----eeCceEEEEEEECCCCEEEEEEecccCccCCCCHHHHHHHHHHhhhhHhh
Confidence 89999999999999999999988754 34889999999999999999998875 356777667777776 899 99
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA 648 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~ 648 (983)
+|+++.++..++..+ .... .+ .++|++|||+||||++||.+|+|||+||||.. +++||+|+
T Consensus 79 ~G~d~~~~~~l~~~l-----~~~~----~~-~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~---------~~~vp~~~ 139 (397)
T 2qde_A 79 LGEDPTKIEKIVGRM-----DILT----RD-NNQAKATVDFALHDLVGKRFGVPVYQLLGGKT---------IERIPLGL 139 (397)
T ss_dssp TTCCTTCHHHHHHHH-----HHHC----SS-CHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCS---------CSSEEBCE
T ss_pred cCCChHhHHHHHHHh-----hhhh----cc-chhHHHHHHHHHHHHHHHHhCCcHHHHhCCCC---------CCCcceEE
Confidence 999988765544321 1111 11 57899999999999999999999999999975 46899998
Q ss_pred eecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCC
Q 041113 649 LIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD 728 (983)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~ 728 (983)
+++ ..+++++.+.+++++++||++||+|+|. +++.|+++|++||+++|+++.|++|+|++||.++|+++++.|++++
T Consensus 140 ~~g-~~~~e~~~~~a~~~~~~Gf~~vKik~g~--~~~~~~e~v~avR~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~ 216 (397)
T 2qde_A 140 VLG-AGEPEAVAEEALAVLREGFHFVKLKAGG--PLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYN 216 (397)
T ss_dssp ECC-CSCHHHHHHHHHHHHHHTCSCEEEECCS--CHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGC
T ss_pred ECC-CCCHHHHHHHHHHHHHhhhhheeecccC--CHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 763 3689999999999999999999999996 7899999999999999999999999999999999999999999999
Q ss_pred CceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHcC
Q 041113 729 LQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRHG 805 (983)
Q Consensus 729 i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~g 805 (983)
+.|||||++ +++++++|++++++||++||++.+.. .+..+++ ..+|++++|++++||++++++++++|+++|
T Consensus 217 i~~iEqP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~-----~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g 291 (397)
T 2qde_A 217 LSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELH-----DLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLAN 291 (397)
T ss_dssp CSCEECCSCTTCHHHHHHHHTTCSSCEEESTTCCSHH-----HHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHT
T ss_pred CCEEECCCChhhHHHHHHHHhhCCCCEEEeCCcCCHH-----HHHHHHHcCCCCEEEEeccccCCHHHHHHHHHHHHHcC
Confidence 999999998 78899999999999999999999865 3566555 457999999999999999999999999999
Q ss_pred CcEEeCCCCchHHHHHHHHHHHhhch------hhh-hhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cC
Q 041113 806 KMAVVSAAFESGLGLSAYIIFSSYLE------LQN-AYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NS 874 (983)
Q Consensus 806 i~~~~~~~~es~ig~~a~~~laa~~~------~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P 874 (983)
+++++|++++++|++++++|++++++ |.. +.+ . .+.+++..++.+|++.+|+.+++ +|
T Consensus 292 ~~~~~~~~~es~ig~aa~~hlaa~~~~~~~~~~~~~~~~---~--------~~d~~~~~~~~~d~~~~~~~~~~G~~~~p 360 (397)
T 2qde_A 292 LPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPL---H--------IHDCLNSRDIDNDIALNVPRFEGGYLYPN 360 (397)
T ss_dssp CCEEECCCSCCHHHHHHHHHHHHHCTTGGGSCBCCCHHH---H--------HTTCSSGGGCCCCSBTTCCEEETTEEECC
T ss_pred CeEEEecCcccHHHHHHHHHHHHhCCcccccccccccce---e--------eeecCCchhhhhccccCCceEECCEEECC
Confidence 99999999999999999999999987 410 001 0 12234555678888888998884 89
Q ss_pred CCCeeeEEecchhhhhhhcccc
Q 041113 875 CRGFVEASVAKATHILQNLQIN 896 (983)
Q Consensus 875 ~~pGlGv~~d~a~~~~~~~~~~ 896 (983)
++||||+++| ++.++++...
T Consensus 361 ~~PGlGv~~d--~~~l~~~~~~ 380 (397)
T 2qde_A 361 DGPGLGIELN--EDLVRRLVTP 380 (397)
T ss_dssp CSSBTCCCBC--HHHHHHHBCT
T ss_pred CCCcCCcccC--HHHHhhhccc
Confidence 9999999999 8888888754
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-57 Score=516.40 Aligned_cols=353 Identities=21% Similarity=0.283 Sum_probs=296.5
Q ss_pred cceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC---cCcccHHHHHHHHHH-HHh
Q 041113 491 SICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQLRF-LLH 566 (983)
Q Consensus 491 ~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~---~~~~~~~~~~~~l~~-~~~ 566 (983)
.+|||++|+++.+++|++.||.++.+.. ..++.++|+|+|++|++||||+.+.+ +.+++...+...++. +.|
T Consensus 18 ~~mkI~~i~~~~~~~pl~~p~~~s~~~~----~~~~~v~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p 93 (393)
T 1wuf_A 18 SHMYFQKARLIHAELPLLAPFKTSYGEL----KSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLSSAILIIKEQLLP 93 (393)
T ss_dssp -CEECCEEEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEECSSSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTTHH
T ss_pred CcCEEEEEEEEEEeeeccCCeEecceeE----ecCcEEEEEEEECCCCEEEEEeecCCCCcccCCCHHHHHHHHHHHHHH
Confidence 3489999999999999999999888754 44889999999999999999998642 446676666666665 789
Q ss_pred HhccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEE
Q 041113 567 FMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKI 646 (983)
Q Consensus 567 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~ 646 (983)
.|+|+++.+...++. .+.. ....++|++|||+||||++||.+|+|||+||||. +++||+
T Consensus 94 ~l~G~d~~~~~~l~~---------~l~~--~~g~~~a~~aid~AlwDl~gk~~g~Pl~~lLGg~----------~~~v~~ 152 (393)
T 1wuf_A 94 LLAQRKIRKPEEIQE---------LFSW--IQGNEMAKAAVELAVWDAFAKMEKRSLAKMIGAT----------KESIKV 152 (393)
T ss_dssp HHHHCEESSTTHHHH---------HHTT--SCSCHHHHHHHHHHHHHHHHHHTTSBHHHHTTCC----------CSEEEB
T ss_pred HHcCCCccCHHHHHH---------HHHH--ccCchHHHHHHHHHHHHHHHHHhCCcHHHHhCCC----------CCccee
Confidence 999998776544332 1110 0124789999999999999999999999999994 367999
Q ss_pred EEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhccc
Q 041113 647 CALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD 726 (983)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~ 726 (983)
|++++...+++++.+++++++++||++||+|+| +++|+++|++||+++ +++.|++|+|++|++++| ++++.|++
T Consensus 153 ~~~~g~~~~~e~~~~~a~~~~~~G~~~~KiKvg----~~~d~~~v~avr~a~-~~~~l~vDaN~~~~~~~a-~~~~~l~~ 226 (393)
T 1wuf_A 153 GVSIGLQQNVETLLQLVNQYVDQGYERVKLKIA----PNKDIQFVEAVRKSF-PKLSLMADANSAYNREDF-LLLKELDQ 226 (393)
T ss_dssp CEEECCCSCHHHHHHHHHHHHHHTCCEEEEECB----TTBSHHHHHHHHTTC-TTSEEEEECTTCCCGGGH-HHHHTTGG
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHhhHhheeccC----hHHHHHHHHHHHHHc-CCCEEEEECCCCCCHHHH-HHHHHHHh
Confidence 988753446999999999999999999999997 357899999999999 899999999999999999 99999999
Q ss_pred CCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHH
Q 041113 727 CDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQR 803 (983)
Q Consensus 727 ~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~ 803 (983)
+++.|||||++ |++++++|++++++||++||++++.. .+..+++.+ +|++|+|++++||++++++++++|++
T Consensus 227 ~~i~~iEqP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~-----~~~~~i~~~a~d~v~ik~~~~GGit~~~~ia~~A~~ 301 (393)
T 1wuf_A 227 YDLEMIEQPFGTKDFVDHAWLQKQLKTRICLDENIRSVK-----DVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCAL 301 (393)
T ss_dssp GTCSEEECCSCSSCSHHHHHHHTTCSSEEEECTTCCSHH-----HHHHHHHHTCCSEEEECTGGGTSHHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCcCHHHHHHHHHhCCCCEEECCCcCCHH-----HHHHHHHhCCCCEEEeChhhhCCHHHHHHHHHHHHH
Confidence 99999999998 78999999999999999999998875 366665544 79999999999999999999999999
Q ss_pred cCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccc-hhcccccCCCCCceeec----cCCCCe
Q 041113 804 HGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGT-YQWLKEDVTTDPISICH----NSCRGF 878 (983)
Q Consensus 804 ~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~d~~~~p~~~~~----~P~~pG 878 (983)
+|++++++|++||+|+.++++|++ +++|. ..+++++. ..++.+|++.+|+.+++ +|++||
T Consensus 302 ~gi~~~~~~~~es~i~~aa~~hla-a~~~~--------------~~~~~l~~~~~~~~~d~~~~~~~~~~G~i~~p~~PG 366 (393)
T 1wuf_A 302 NEILVWCGGMLEAGVGRAHNIALA-ARNEF--------------VFPGDISASNRFFAEDIVTPAFELNQGRLKVPTNEG 366 (393)
T ss_dssp TTCEEEECCCCCCHHHHHHHHHHH-TSSSC--------------CSCBSCCCGGGTBSSCSBSSCCCCCSSEEECCCSSB
T ss_pred cCCeEEecCCcccHHHHHHHHHHH-hCCCC--------------CcccccCchhhhhhhhcccCCcEEECCEEECCCCCc
Confidence 999999999999999999999997 56642 11122332 34678888888888874 899999
Q ss_pred eeEEecchhhhhhhcccc
Q 041113 879 VEASVAKATHILQNLQIN 896 (983)
Q Consensus 879 lGv~~d~a~~~~~~~~~~ 896 (983)
||+++| ++.++++...
T Consensus 367 lGv~~d--~~~l~~~~~~ 382 (393)
T 1wuf_A 367 IGVTLD--LKVLKKYTKS 382 (393)
T ss_dssp TSCCBC--HHHHHTTEEE
T ss_pred CCCccC--HHHHhhhcee
Confidence 999999 8888777654
|
| >3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-57 Score=510.02 Aligned_cols=337 Identities=13% Similarity=0.125 Sum_probs=278.7
Q ss_pred ceeEeEEEEEEEEeeCCCCCccc--cccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhc
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSS--YIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMT 569 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~--~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~ 569 (983)
+|||++|+++.+++|++.||.++ .+.+ ...++.++|+|+|| |++||||+.+.. +.+.|.|+
T Consensus 11 ~mkI~~i~~~~v~~pl~~~f~~s~~~g~~---~~~~~~~~V~i~td-G~~G~GE~~~~~-------------~~l~~~li 73 (392)
T 3v5c_A 11 DWKVEKIEFAKLTGERARSAGANGRIGVH---GKSCTVDIARITID-GQTGYGSSIHMT-------------PEWAEDVI 73 (392)
T ss_dssp TCBEEEEEEEEEEEEEEEEECBCSSSCCC---EEEEEEEEEEEEET-TEEEEEECCSCC-------------HHHHHTTT
T ss_pred CcEEEEEEEEEEeeecCcccccccccCcc---CCCceeEEEEEEEc-CCEEEEeecCcH-------------HHHHHHhC
Confidence 48999999999999999999964 5443 12378999999999 999999998642 24678899
Q ss_pred cCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccce-----e
Q 041113 570 GAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTS-----I 644 (983)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~-----i 644 (983)
|+++.++... ......+|++|||+|||||+||.+|+|||+||||.. +++ |
T Consensus 74 G~d~~~~~~~----------------~~~~~~~A~aaiD~ALwDl~gK~~g~Pv~~LLGG~~---------r~~~~~v~v 128 (392)
T 3v5c_A 74 GRRLLDLFDD----------------RGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAH---------LETGASLVV 128 (392)
T ss_dssp TCBGGGGBCT----------------TSCBCGGGHHHHHHHHHHHHHHHHTCBHHHHHSCCC---------SCCCCCEEE
T ss_pred CCCHHHHHhh----------------ccchHHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCC---------CcccccceE
Confidence 9988754210 113457899999999999999999999999999986 455 8
Q ss_pred EEEEeecCC------C---CHHHHHHHHHHhhhcCCCEEEEeccCCC-------ChHHHHHHHHHHHHHcCCCcEEEEEc
Q 041113 645 KICALIDSN------K---SPVEVASIATTLVEEGFTAIKLKVARRA-------DPIKDAEVIQEVRKKVGHRIELRVDA 708 (983)
Q Consensus 645 ~~~~~~~~~------~---~~~~~~~~~~~~~~~G~~~~KiKig~~~-------~~~~d~~~v~~vr~~~g~~~~l~vDa 708 (983)
++|++.... . +++++++++++++++||++||+|+|... ++++|+++|++||+++||++.|++|+
T Consensus 129 ~~y~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~Gf~~~KlKvg~~~~~~~~~~~~~~d~~~v~avR~a~g~~~~l~vDa 208 (392)
T 3v5c_A 129 PCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDA 208 (392)
T ss_dssp EEEEEEECBTTTTCCCHHHHHHHHHHHHHHHHHTTCCCEEEECCTTTTTSCHHHHHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred EEEEeecccccccccccccCHHHHHHHHHHHHHCCCCEEEECCCCCCccccccccHHHHHHHHHHHHHHcCCCCcEEeeC
Confidence 988754221 1 3578899999999999999999999621 26899999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcccCCCceeecCCC-ChHHHHHHHhh-----cCCcEEeCCCccCcCCChHHHHHhhcCC-CceEE
Q 041113 709 NRNWTYQEALEFGFLIKDCDLQYIEEPVQ-NEEDIIKYCEE-----SGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAI 781 (983)
Q Consensus 709 N~~~~~~~a~~~~~~l~~~~i~~iEeP~~-~~~~~~~l~~~-----~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i 781 (983)
|++||+++|+++++.|+++++.|||||++ +.+++++|+++ +++|||+||+++ ..+ +..+++. .+|++
T Consensus 209 N~~w~~~~A~~~~~~L~~~~l~~iEeP~~~d~~~~~~l~~~~~~~~~~ipIa~gE~~~-~~~-----~~~li~~~a~dii 282 (392)
T 3v5c_A 209 NNAYNLNLTKEVLAALSDVNLYWLEAAFHEDEALYEDLKEWLGQRGQNVLIADGEGLA-SPH-----LIEWATRGRVDVL 282 (392)
T ss_dssp TTCCCHHHHHHHHHHTTTSCCCEEECSSSCCHHHHHHHHHHHHHHTCCCEEEECCSSC-CTT-----HHHHHHTTSCCEE
T ss_pred CCCcCHHHHHHHHHhcccCCCeEEeCCCCcCHHHHHHHHHhhccCCCCCcEECCCccc-HHH-----HHHHHHcCCCcEE
Confidence 99999999999999999999999999999 78899999875 789999999999 664 4555554 47999
Q ss_pred EEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccc
Q 041113 782 VIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKE 861 (983)
Q Consensus 782 ~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 861 (983)
|+|+++ |||+++++++++|+++|++++.|+ ++++|++++++||++++||+. . .+ ++ .++..
T Consensus 283 ~~d~~~-GGitea~kia~~A~~~gv~~~~h~-~~s~i~~aa~~hlaaa~p~~~--~---~e----------~~--~~~~~ 343 (392)
T 3v5c_A 283 QYDIIW-PGFTHWMELGEKLDAHGLRSAPHC-YGNAYGIYASGHLSAAVRNFE--F---VE----------YD--DITIE 343 (392)
T ss_dssp CCBTTT-BCHHHHHHHHHHHHHTTCEECCBC-CSCTHHHHHHHHHGGGCTTBC--C---EE----------EC--CEEET
T ss_pred EeCCCC-CCHHHHHHHHHHHHHcCCeEEecC-CCcHHHHHHHHHHHHhCCCCc--e---Ee----------cc--cchhh
Confidence 999999 999999999999999999987665 599999999999999999641 1 11 11 12334
Q ss_pred cCCCCCceeec----cCCCCeeeEEecchhhhhhhccccc
Q 041113 862 DVTTDPISICH----NSCRGFVEASVAKATHILQNLQINN 897 (983)
Q Consensus 862 d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~~ 897 (983)
++..+++.+++ +|++|||||++| ++.++++....
T Consensus 344 ~~~~~~~~~~~G~i~vp~~PGlGve~d--~~~l~~~~~~~ 381 (392)
T 3v5c_A 344 GMDVSGYRIENGEIHVPATPGFGIVFD--DELVTYLINRS 381 (392)
T ss_dssp TEECTTCEEETTEEEECCSSBTSCEEC--HHHHHHHHHHT
T ss_pred hccCCCCeeECCEEECCCCCCCCccCC--HHHHHhhhccC
Confidence 55567888874 999999999999 88888877554
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-56 Score=506.67 Aligned_cols=357 Identities=13% Similarity=0.136 Sum_probs=304.6
Q ss_pred eeEeEEEEEEEEeeCCC-CCcccccc-ccCcceeeeEEEEEEEECCCCEEEEeecCc-C-cCcccHHHHHHHHHHHHhHh
Q 041113 493 CKICRMEYSLYRIQLCA-PPTSSYID-HNRSRFCREGFILSLYLEDGSVGYGEVAPL-E-IHKENLLDAEEQLRFLLHFM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~-p~~~~~~~-~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~-~-~~~~~~~~~~~~l~~~~~~l 568 (983)
|||++|+++.+++|++. ||.++.+. . ..++.++|+|+|++|.+||||+.+. + ++.++...+...++.++|.|
T Consensus 3 mkI~~i~~~~~~~pl~~~p~~~s~~~~~----~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~i~~l~~~l 78 (379)
T 2rdx_A 3 LRITRIRLYKTDLPYVDGSYGWGAGNAI----TVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQL 78 (379)
T ss_dssp CCEEEEEEEEEEEEBTTSCCEETTTEEC----SEEEEEEEEEEETTSCEEEEEEBCSSTTSSSCCTTHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEEeeecCCCCcEecCceee----cccceEEEEEEECCCCEEEEEeecCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999 99988764 3 3488999999999999999999875 3 45566556667777889999
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA 648 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~ 648 (983)
+|+++.+++.++..+ .... .+ .++|++|||+||||+.||.+|+|||+||||.. +++||+|+
T Consensus 79 ~g~d~~~~~~~~~~l-----~~~~----~g-~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~---------~~~v~~~~ 139 (379)
T 2rdx_A 79 LGQDPRQVARMERLM-----DHLV----QG-HGYAKAPFDAAFWDILGQATGQPVWMLLGGKL---------CDGAPMYR 139 (379)
T ss_dssp TTSCTTCHHHHHHHH-----HHHS----SS-CHHHHHHHHHHHHHHHHHHHTCBHHHHTTSCC---------CSSEEBCE
T ss_pred cCCChhhHHHHHHHH-----HHHh----cc-cHHHHHHHHHHHHHHhHHHhCCCHHHHcCCCC---------CCceeEEE
Confidence 999988765554321 1111 12 57899999999999999999999999999975 46899998
Q ss_pred eecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCC
Q 041113 649 LIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD 728 (983)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~ 728 (983)
+++ ..+++++.+.+++++++||+.||+|+|. +++.|+++|++||+++|+++.|++|+|++||.++|+++++.|++++
T Consensus 140 ~~~-~~~~~~~~~~a~~~~~~Gf~~iKik~g~--~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~ 216 (379)
T 2rdx_A 140 VAP-QRSEAETRAELARHRAAGYRQFQIKVGA--DWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLD 216 (379)
T ss_dssp ECC-CSCSHHHHHHHHHHHHTTCCEEEEECCS--CHHHHHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSC
T ss_pred Eec-CCCHHHHHHHHHHHHHcCCCEEEEeccC--CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 874 3688999999999999999999999996 7899999999999999999999999999999999999999999999
Q ss_pred CceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHcCCc
Q 041113 729 LQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRHGKM 807 (983)
Q Consensus 729 i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~ 807 (983)
+ |||||+++++.++++++++++||++||++.+.. .+..+++ ..+|++++|++++||++++++++++|+++|++
T Consensus 217 i-~iE~P~~~~~~~~~l~~~~~iPI~~de~i~~~~-----~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~ 290 (379)
T 2rdx_A 217 Y-ILEQPCRSYEECQQVRRVADQPMKLDECVTGLH-----MAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMP 290 (379)
T ss_dssp C-EEECCSSSHHHHHHHHTTCCSCEEECTTCCSHH-----HHHHHHHHTCCSEEEEETTTTTSHHHHHHHHHHHHHTTCC
T ss_pred e-EEeCCcCCHHHHHHHHhhCCCCEEEeCCcCCHH-----HHHHHHHcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCe
Confidence 9 999999989999999999999999999998865 3555554 45899999999999999999999999999999
Q ss_pred EEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeEEe
Q 041113 808 AVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEASV 883 (983)
Q Consensus 808 ~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~ 883 (983)
+++|+++||++++++++|++++++|+. + .++++..+++.+|++.+|+.+++ +|++||||+++
T Consensus 291 ~~~~~~~es~i~~~a~~~laaa~~~~~--~------------~~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~ 356 (379)
T 2rdx_A 291 VVAEDSWGGEIASAAVAHFAASTPEEF--L------------INSTDLMNYNTRSTGLGGPTVHQGRLYASDTPGLGVTP 356 (379)
T ss_dssp EEEECSBCSHHHHHHHHHHHHTSCTTT--E------------EEECCGGGGBSSCSEEECCEEETTEEECCCSSBTSEEE
T ss_pred EEEeeccCcHHHHHHHHHHHHcCCCcc--c------------cccccccchhhhccccCCceEECCEEEcCCCCcCCeee
Confidence 999999999999999999999998631 1 11122233567788777888874 89999999999
Q ss_pred cchhhhhhhccccc
Q 041113 884 AKATHILQNLQINN 897 (983)
Q Consensus 884 d~a~~~~~~~~~~~ 897 (983)
| ++.++++....
T Consensus 357 d--~~~l~~~~~~~ 368 (379)
T 2rdx_A 357 D--FNSLGAPVADW 368 (379)
T ss_dssp C--HHHHCSCSEEE
T ss_pred C--HHHHhcceeee
Confidence 9 88877766543
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-57 Score=513.58 Aligned_cols=348 Identities=14% Similarity=0.120 Sum_probs=286.8
Q ss_pred ccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHH-HHhHh
Q 041113 490 LSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRF-LLHFM 568 (983)
Q Consensus 490 ~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~-~~~~l 568 (983)
++.|||++|+++.++ | .++.++|||+||+|++||||+.+.. .. ..+...++. +.|.|
T Consensus 14 ~~~mkIt~v~~~~~~-----~-------------~~~~~~V~v~td~G~~G~GE~~~~~-~~---~~~~~~i~~~l~p~L 71 (418)
T 3r4e_A 14 GSHMKITAARVIITC-----P-------------GRNFVTLKIETDQGVYGIGDATLNG-RE---LSVVAYLQEHVAPCL 71 (418)
T ss_dssp TCCCCEEEEEEEEEC-----S-------------SSCEEEEEEEETTSCEEEEECCCTT-CH---HHHHHHHHHTHHHHH
T ss_pred CCCCEEEEEEEEEEc-----C-------------CCcEEEEEEEECCCCEEEEeccCCC-Ch---HHHHHHHHHHHHHHh
Confidence 355899999987652 1 1467899999999999999987543 12 234455655 99999
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA 648 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~ 648 (983)
+|+++.+++.++..++ ............+|++|||||||||+||.+|+|||+||||.. +++|++|+
T Consensus 72 iG~dp~~ie~l~~~~~-----~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~---------r~~v~~y~ 137 (418)
T 3r4e_A 72 IGMDPRRIEDIWQYVY-----RGAYWRRGPVTMRAIAAVDMALWDIKAKMAGMPLYQLLGGRS---------RDGIMVYG 137 (418)
T ss_dssp TTSCTTCHHHHHHHHH-----HHTSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTCCS---------CSSEEEEE
T ss_pred cCCChhhHHHHHHHHH-----HhcccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCCcc---------CCeeeEEE
Confidence 9999998776664322 111111223467899999999999999999999999999986 57899998
Q ss_pred eecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCC-------------------------------ChHHHHHHHHHHHHH
Q 041113 649 LIDSNKSPVEVASIATTLVEEGFTAIKLKVARRA-------------------------------DPIKDAEVIQEVRKK 697 (983)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~-------------------------------~~~~d~~~v~~vr~~ 697 (983)
++. ..+++++++++++++++||++||+|+|.+. +++.|+++|++||++
T Consensus 138 ~~~-~~~~e~~~~~a~~~~~~Gf~~~K~k~G~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~v~avR~a 216 (418)
T 3r4e_A 138 HAN-GSDIAETVEAVGHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDTRKALNYVPKLFEELRKT 216 (418)
T ss_dssp EEE-ESSHHHHHHHHHHHHHTTCSEEEEEECCTTC------------------CCCCEEEECHHHHHHHHHHHHHHHHHH
T ss_pred eCC-CCCHHHHHHHHHHHHHcCCCEEEEecCCccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 863 568999999999999999999999998520 146789999999999
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC
Q 041113 698 VGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH 775 (983)
Q Consensus 698 ~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~ 775 (983)
+|+++.|++|+|++|++++|+++++.|+++++.|||||++ +++.+++|++++++||++||++.+..+ +..+++
T Consensus 217 ~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~l~ 291 (418)
T 3r4e_A 217 YGFDHHLLHDGHHRYTPQEAANLGKMLEPYQLFWLEDCTPAENQEAFRLVRQHTVTPLAVGEIFNTIWD-----AKDLIQ 291 (418)
T ss_dssp HCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEESCSCCSSGGGGHHHHHHCCSCEEECTTCCSGGG-----THHHHH
T ss_pred cCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEECCCCccCHHHHHHHHhcCCCCEEEcCCcCCHHH-----HHHHHH
Confidence 9999999999999999999999999999999999999998 788999999999999999999999875 455554
Q ss_pred C-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCc
Q 041113 776 P-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGL 853 (983)
Q Consensus 776 ~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~ 853 (983)
. .+|++++|++++||++++++++++|+++|+++++|+++ +|+|++++++||++++||+. . .+ +
T Consensus 292 ~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~ig~aA~~hlaaa~pn~~--~---~e--~-------- 356 (418)
T 3r4e_A 292 NQLIDYIRATVVGAGGLTHLRRIADLASLYQVRTGCHGPTDLSPVTMGCALHFDTWVPNFG--I---QE--Y-------- 356 (418)
T ss_dssp TTCCSEECCCTTTTTHHHHHHHHHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHCTTEE--E---EE--C--------
T ss_pred cCCCCeEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCccHHHHHHHHHHHHhCCCcc--e---Ee--e--------
Confidence 4 47999999999999999999999999999999988887 79999999999999999642 1 11 1
Q ss_pred cchhcccccCCCCCceeec----cCCCCeeeEEecchhhhhhhcccc
Q 041113 854 GTYQWLKEDVTTDPISICH----NSCRGFVEASVAKATHILQNLQIN 896 (983)
Q Consensus 854 ~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~ 896 (983)
.....+..|++.+++.+++ +|++|||||++| ++.++++.+.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGveld--~~~l~~~~~~ 401 (418)
T 3r4e_A 357 MRHTEETDAVFPHDYWFEKGELFVGETPGHGVDID--EELAAKYPYK 401 (418)
T ss_dssp CCCCHHHHHHSCBSEEEETTEEEECCCSBSSBCCC--HHHHTTSCCC
T ss_pred cCcchhhHhhcCCCceeeCCEEECCCCCCCCCccC--HHHHHhccCC
Confidence 1112234566677888874 999999999999 8888888765
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-57 Score=512.27 Aligned_cols=347 Identities=13% Similarity=0.147 Sum_probs=285.1
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHH-HHhHhcc
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRF-LLHFMTG 570 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~-~~~~l~g 570 (983)
.|||++|+++.++ | + ..+.++|||+||+|++||||+.+.. .. ..+...++. +.|.|+|
T Consensus 5 ~mkIt~v~~~~~~-----~-----~-------~~~~~~V~v~td~G~~G~GE~~~~~-~~---~~~~~~i~~~l~p~liG 63 (401)
T 3sbf_A 5 ETIISDIHCIITK-----P-----D-------RHNLITVVVETNEGVTGFGCATFQQ-RP---LAVKTMVDEYLKPILIG 63 (401)
T ss_dssp CCBEEEEEEEEEC-----S-----S-------SSCEEEEEEEETTSCEEEEECCCTT-SH---HHHHHHHHHTHHHHHTT
T ss_pred CeEEEEEEEEEEc-----C-----C-------CceEEEEEEEeCCCCEEEEccccCC-CH---HHHHHHHHHHHHHHHcC
Confidence 4899999987652 1 0 0367899999999999999987643 22 234455655 9999999
Q ss_pred CcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEee
Q 041113 571 AKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALI 650 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~ 650 (983)
+++.+++.++..+. ............+|++|||+|||||+||.+|+|||+||||.. +++|++|+++
T Consensus 64 ~d~~~~e~~~~~~~-----~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~---------r~~v~~y~~~ 129 (401)
T 3sbf_A 64 KNANNIEDLWQMMM-----VNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKS---------RDAIPVYTHA 129 (401)
T ss_dssp SBTTCHHHHHHHHH-----HTTSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTCCS---------SSSEEEEEEE
T ss_pred CChhhHHHHHHHHH-----HhcccCCCcHHHHHHHHHHHHHHHHhHhHhCCcHHHHhCCCc---------CCeeeEEEeC
Confidence 99988766654322 111111223467899999999999999999999999999986 5789999876
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCC----------------------hHHHHHHHHHHHHHcCCCcEEEEEc
Q 041113 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRAD----------------------PIKDAEVIQEVRKKVGHRIELRVDA 708 (983)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~----------------------~~~d~~~v~~vr~~~g~~~~l~vDa 708 (983)
. ..+++++++++++++++||++||+|+|.... ++.|+++|++||+++|+++.|++|+
T Consensus 130 ~-~~~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDa 208 (401)
T 3sbf_A 130 T-SDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDV 208 (401)
T ss_dssp E-ESSHHHHHHHHHHHHHTTCCEEEEEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTSSEEEEEC
T ss_pred C-CCCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 3 4789999999999999999999999986310 5688999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcC
Q 041113 709 NRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKP 785 (983)
Q Consensus 709 N~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~ 785 (983)
|++||.++|+++++.|+++++.|||||++ +++++++|++++++||++||++++..+ +..+++. .+|++++|+
T Consensus 209 n~~~~~~~A~~~~~~L~~~~i~~iEqP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~i~~~~~d~v~~k~ 283 (401)
T 3sbf_A 209 HERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQSSVSLGLGELFNNPEE-----WKSLIANRRIDFIRCHV 283 (401)
T ss_dssp TTCSCHHHHHHHHHHHGGGCCSCEECSSCTTCGGGHHHHHTTCCCCEEECTTCCSHHH-----HHHHHHTTCCSEECCCG
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEECCCChhHHHHHHHHHhhCCCCEEeCCccCCHHH-----HHHHHhcCCCCEEecCc
Confidence 99999999999999999999999999998 789999999999999999999998753 6666654 479999999
Q ss_pred CCcCCHHHHHHHHHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCC
Q 041113 786 SVIGGFENAGLIARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVT 864 (983)
Q Consensus 786 ~~~GGl~~~~~~~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~ 864 (983)
+++||++++++++++|+++|+++++|++. +|+|++++++||++++||+. . .+ + .....+.+|++
T Consensus 284 ~~~GGit~~~kia~~A~~~gi~~~~h~~~~~s~i~~aA~~hlaaa~p~~~--~---~e--~--------~~~~~~~~~~~ 348 (401)
T 3sbf_A 284 SQIGGITPALKLGHLCQNFGVRIAWHCAPDMTPIGAAVNTHLNVHLHNAA--I---QE--H--------VEYNGNTHKVF 348 (401)
T ss_dssp GGGTSHHHHHHHHHHHHHHTCEECCCCCTTSCHHHHHHHHHHHHHSTTBC--C---EE--C--------CCCCHHHHHHS
T ss_pred cccCCHHHHHHHHHHHHHcCCEEEecCCcccchHHHHHHHHHHHhCCCcc--e---ee--c--------cCCchhhHhhc
Confidence 99999999999999999999998888775 79999999999999999642 1 11 1 11112345666
Q ss_pred CCCceeec----cCCCCeeeEEecchhhhhhhcccc
Q 041113 865 TDPISICH----NSCRGFVEASVAKATHILQNLQIN 896 (983)
Q Consensus 865 ~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~ 896 (983)
.+++.+++ +|++|||||++| ++.++++.+.
T Consensus 349 ~~~~~~~~G~i~~p~~PGlGve~d--~~~l~~~~~~ 382 (401)
T 3sbf_A 349 PNAAEPINGYLYASEIAGIGVEID--REAAAEFPVM 382 (401)
T ss_dssp TTCCCCBTTEECCCCSSBSSCCCC--HHHHHTSCCC
T ss_pred CCCCeeeCCEEECCCCCCCCceEC--HHHHHhcccc
Confidence 77777774 999999999999 8888898865
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-57 Score=515.59 Aligned_cols=346 Identities=15% Similarity=0.141 Sum_probs=285.2
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHH-HHhHhcc
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRF-LLHFMTG 570 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~-~~~~l~g 570 (983)
+|||++|+++.+. | .++.++|||+||+|++||||+.+.. .. ..+...++. +.|.|+|
T Consensus 23 ~mkIt~v~~~~~~-----~-------------~~~~v~V~v~td~G~~G~GE~~~~~-~~---~~~~~~i~~~l~p~LiG 80 (425)
T 3vcn_A 23 MLKIIDAKVIVTC-----P-------------GRNFVTLKITTEDGITGVGDATLNG-RE---LSVVSFLQDHMVPSLIG 80 (425)
T ss_dssp CCBEEEEEEEEEC-----S-------------SSCEEEEEEEETTSCEEEEECCCTT-CH---HHHHHHHHHTTHHHHTT
T ss_pred CCEEEEEEEEEEc-----C-------------CCcEEEEEEEECCCCEEEEeccCCC-Ch---HHHHHHHHHHHHHHhCC
Confidence 4899999987652 1 1467899999999999999987543 11 234455654 8999999
Q ss_pred CcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEee
Q 041113 571 AKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALI 650 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~ 650 (983)
+++.+++.++..++ ............+|++|||||||||+||.+|+|||+||||.. +++|++|+++
T Consensus 81 ~dp~~ie~i~~~~~-----~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~---------r~~v~~y~~~ 146 (425)
T 3vcn_A 81 RDAHQIEDIWQFFY-----RGSYWRGGPVAMTALAAVDMALWDIKGKVAGLPVYQLLGGAC---------RTGVTVYGHA 146 (425)
T ss_dssp CBTTCHHHHHHHHH-----HHTSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTTCCS---------SSSEEEEEEE
T ss_pred CChhhHHHHHHHHH-----hhcccCCchHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCCC---------CCeeeEEEeC
Confidence 99998776664322 111111223467899999999999999999999999999986 5789999876
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCEEEEeccCC----------------C------C---------hHHHHHHHHHHHHHcC
Q 041113 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARR----------------A------D---------PIKDAEVIQEVRKKVG 699 (983)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~----------------~------~---------~~~d~~~v~~vr~~~g 699 (983)
. ..+++++++++++++++||++||+|+|.+ . . ++.|+++|++||+++|
T Consensus 147 ~-~~~~e~~~~~a~~~~~~Gf~~iKlKvg~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~v~avR~a~G 225 (425)
T 3vcn_A 147 N-GETIEDTIAEAVKYKAMGYKAIRLQTGVPGLASTYGVSKDKMFYEPADNDLPTENIWSTAKYLNSVPKLFERAREVLG 225 (425)
T ss_dssp E-ESSHHHHHHHHHHHHHTTCSEEEEEECCTTCSCCTTCSSCSSCCCCCCBSSCCEEEECHHHHHTTTHHHHHHHHHHHC
T ss_pred C-CCCHHHHHHHHHHHHHcCCCEEEEeecCccccccccccccccccCcccccccccccccchhHHHHHHHHHHHHHHHcC
Confidence 3 46899999999999999999999999841 0 0 4578999999999999
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-
Q 041113 700 HRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP- 776 (983)
Q Consensus 700 ~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~- 776 (983)
+++.|++|+|++||+++|+++++.|+++++.|||||++ +++.+++|++++++||++||++.+..+ +..+++.
T Consensus 226 ~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~i~~~ 300 (425)
T 3vcn_A 226 WDVHLLHDVHHRLTPIEAARLGKDLEPYRLFWLEDSVPAENQAGFRLIRQHTTTPLAVGEIFAHVWD-----AKQLIEEQ 300 (425)
T ss_dssp SSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECCSCCSSTTHHHHHHHHCCSCEEECTTCCSGGG-----THHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEECCCChhhHHHHHHHHhcCCCCEEeCCCcCCHHH-----HHHHHHcC
Confidence 99999999999999999999999999999999999998 788999999999999999999999875 4555544
Q ss_pred CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccc
Q 041113 777 GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGT 855 (983)
Q Consensus 777 ~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~ 855 (983)
.+|++++|++++|||+++++++++|+++|+++++|++. +|+|++++++||++++||+. . .+ +..
T Consensus 301 a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~ig~aA~~hlaaa~pn~~--~---~e----------~~~ 365 (425)
T 3vcn_A 301 LIDYLRATVLHAGGITNLKKIAAFADLHHVKTGCHGATDLSPVTMAAALHFDMSITNFG--L---QE----------YMR 365 (425)
T ss_dssp CCSEECCCTTTTTHHHHHHHHHHHHGGGTCEECCCCCTTSCHHHHHHHHHHHHTCSCBC--C---EE----------CCC
T ss_pred CCCeEecChhhcCCHHHHHHHHHHHHHcCCEEeeccCCcccHHHHHHHHHHHHhCCCCc--e---Ee----------ecC
Confidence 47999999999999999999999999999999988887 79999999999999999641 1 11 111
Q ss_pred hhcccccCCCCCceeec----cCCCCeeeEEecchhhhhhhcccc
Q 041113 856 YQWLKEDVTTDPISICH----NSCRGFVEASVAKATHILQNLQIN 896 (983)
Q Consensus 856 ~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~ 896 (983)
...+..|++.+++.+++ +|++|||||++| ++.++++.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~G~i~~p~~PGlGveld--~~~l~~~~~~ 408 (425)
T 3vcn_A 366 HTPETDAVFPHAYTFSDGMLHPGDKPGLGVDID--EDLAAKHPYK 408 (425)
T ss_dssp CCHHHHHHSCBCCEEETTEEECCSSSBTSBCCC--HHHHTTSCCC
T ss_pred cchhhhhhcCCCceeeCCEEECCCCCCCCCcCC--HHHHHhCcCC
Confidence 12234566677888874 999999999999 8888888765
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-57 Score=513.80 Aligned_cols=355 Identities=14% Similarity=0.149 Sum_probs=283.9
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHH--------
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRF-------- 563 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~-------- 563 (983)
.|||++|+++.+++|+ .. +.++.++|||+||+|++||||+.+.+ +. +...+..
T Consensus 4 ~mkI~~i~~~~v~~p~------~~-------~~~~~~~V~v~td~G~~G~GE~~~~~---~~---~~~~~~~~~~~~~~~ 64 (394)
T 3mqt_A 4 GANIVSVEFIPVNVAA------TN-------WSENTVIVKVTDENGVYGLGEADGPP---EC---MKAFSEIENEHKWLN 64 (394)
T ss_dssp -CCEEEEEEEEEECC------------------CEEEEEEEEETTSCEEEEEECSCH---HH---HHHHHTCCCCBTTBC
T ss_pred CCeEeEEEEEEEecCC------CC-------CCccEEEEEEEECCCCEEEEEECCcH---HH---HHHHHhcccchhhHH
Confidence 3899999999999887 11 23789999999999999999997542 11 1222233
Q ss_pred -HHhHhccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccc
Q 041113 564 -LLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRST 642 (983)
Q Consensus 564 -~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~ 642 (983)
+.|.|+|+++.+++.++..++... ......+...+|++|||+|||||+||.+|+|||+||||.. ++
T Consensus 65 ~l~p~liG~dp~~~e~~~~~l~~~~----~~~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~---------r~ 131 (394)
T 3mqt_A 65 NIKEAVIGRDPLEFRANYNRMYDTT----KWIGMRGLGLFAISGIDMALYDLAGKQLGVPAYKLMGGAQ---------KA 131 (394)
T ss_dssp CGGGGTTTSCTTCHHHHHHHHHHHT----TTTCSSBHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCC---------SS
T ss_pred HHHHHhCCCChhHHHHHHHHHHHhh----hhhCCccHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCCC---------CC
Confidence 789999999988776664322110 1111234568899999999999999999999999999986 57
Q ss_pred eeEEEEeecC----CCCHH----HHHHHHHHhhhcCCCEEEE-eccCC-CChHHHHHHHHHHHHHcCCCcEEEEEcCCCC
Q 041113 643 SIKICALIDS----NKSPV----EVASIATTLVEEGFTAIKL-KVARR-ADPIKDAEVIQEVRKKVGHRIELRVDANRNW 712 (983)
Q Consensus 643 ~i~~~~~~~~----~~~~~----~~~~~~~~~~~~G~~~~Ki-Kig~~-~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~ 712 (983)
+|++|+++.. ..+++ ++.+++++++++||++||+ |+|.. .++++|+++|++||+++|+++.|++|+|++|
T Consensus 132 ~v~~y~s~~~~~~~~~~~~~~i~~~~~~a~~~~~~G~~~~K~~k~g~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~ 211 (394)
T 3mqt_A 132 QLTPYFTLYPSVAADATLSEIVEAYKPLIAKAKERGAKAVKVCIIPNDKVSDKEIVAYLRELREVIGWDMDMMVDCLYRW 211 (394)
T ss_dssp SBCCEEECCCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHHHHHHHHHHHCSSSEEEEECTTCC
T ss_pred eEEEEEEecCCCCCCcchhhhHHHHHHHHHHHHHcCCCEEEecccCCCccCHHHHHHHHHHHHHHhCCCCeEEEECCCCC
Confidence 8999988741 22445 6677899999999999999 99931 2689999999999999999999999999999
Q ss_pred -CHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCc
Q 041113 713 -TYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVI 788 (983)
Q Consensus 713 -~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~ 788 (983)
+.++|+++++.|+++++.|||||++ +++++++|++++++||++||++.+..+ +..+++. .+|++++|++++
T Consensus 212 ~~~~~A~~~~~~L~~~~i~~iEeP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~l~~~~~d~v~~k~~~~ 286 (394)
T 3mqt_A 212 TDWQKARWTFRQLEDIDLYFIEACLQHDDLIGHQKLAAAINTRLCGAEMSTTRFE-----AQEWLEKTGISVVQSDYNRC 286 (394)
T ss_dssp SCHHHHHHHHHHTGGGCCSEEESCSCTTCHHHHHHHHHHSSSEEEECTTCCHHHH-----HHHHHHHHCCSEECCCTTTS
T ss_pred CCHHHHHHHHHHHhhcCCeEEECCCCcccHHHHHHHHhhCCCCEEeCCCcCCHHH-----HHHHHHcCCCCeEecCcccc
Confidence 9999999999999999999999998 788999999999999999999998753 5556554 579999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCc
Q 041113 789 GGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPI 868 (983)
Q Consensus 789 GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~ 868 (983)
||++++++++++|+++|++++.|+ ++++|++++++||++++||+. . .++.. +. + ...++.+|++.+++
T Consensus 287 GGit~~~~ia~~A~~~gi~~~~h~-~~s~i~~aa~~hlaaa~p~~~--~---~e~~~-~~----~-~~~~~~~~~~~~~~ 354 (394)
T 3mqt_A 287 GGVTELLRIMDICEHHNAQLMPHN-WKTGITAAAARHFGIVCHISE--Y---VEYLH-PD----F-WNGTLTQQLTLNEP 354 (394)
T ss_dssp SCHHHHHHHHHHHHHHTCEECCCC-CSCHHHHHHHHHHHHHCTTCS--C---CEECC-TT----T-CCCHHHHHTBSSCC
T ss_pred CCHHHHHHHHHHHHHcCCEEeccC-CCchHHHHHHHHHHHhCCCCc--e---EEecC-cc----c-ccchhHHhhccCCC
Confidence 999999999999999999988655 699999999999999999642 1 11110 00 0 01234567778888
Q ss_pred eeec----cCCCCeeeEEecchhhhhhhccccc
Q 041113 869 SICH----NSCRGFVEASVAKATHILQNLQINN 897 (983)
Q Consensus 869 ~~~~----~P~~pGlGv~~d~a~~~~~~~~~~~ 897 (983)
.+++ +|++||||+++| ++.++++....
T Consensus 355 ~~~~G~i~~p~~PGlGv~~d--~~~l~~~~~~~ 385 (394)
T 3mqt_A 355 KIIDGAIEVSDKPGLGIELN--IEFVEQVTGHK 385 (394)
T ss_dssp CCBTTBBCCCCCSBTCCCBC--HHHHHHHHCSC
T ss_pred cccCCEEECCCCCCCCCCcC--HHHHHhccccc
Confidence 8874 999999999999 88888887654
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-56 Score=514.44 Aligned_cols=349 Identities=16% Similarity=0.173 Sum_probs=285.2
Q ss_pred ccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECC-CCEEEEeecCcCcCcccHHHHHHHHHH-HHhH
Q 041113 490 LSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLED-GSVGYGEVAPLEIHKENLLDAEEQLRF-LLHF 567 (983)
Q Consensus 490 ~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~-G~~G~GE~~~~~~~~~~~~~~~~~l~~-~~~~ 567 (983)
|++|||++|+++.++ | + ..+.++|||+||+ |++||||+.+.. .. ..+...++. +.|.
T Consensus 24 ~~~mkIt~v~~~~~~-----~-----~-------~~~~v~V~v~Td~~Gi~G~GE~~~~~-~~---~~~~~~i~~~l~p~ 82 (440)
T 3t6c_A 24 MSNLFITNVKTILTA-----P-----G-------GIDLVVVKIETNEPGLYGLGCATFTQ-RI---YAVQSAIDEYLAPF 82 (440)
T ss_dssp --CCCEEEEEEEEEC-----T-----T-------SSCEEEEEEEESSTTCEEEEECCCGG-GH---HHHHHHHHTTHHHH
T ss_pred CCCCEEEEEEEEEEC-----C-----C-------CceEEEEEEEEcCCCCEEEEeeccCC-CH---HHHHHHHHHHHHHH
Confidence 567999999987652 1 0 0367899999999 999999987643 22 234455655 8999
Q ss_pred hccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEE
Q 041113 568 MTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKIC 647 (983)
Q Consensus 568 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~ 647 (983)
|+|+++.+++.++..++ +...........+|++|||+|||||+||.+|+|||+||||.. +++|++|
T Consensus 83 LiG~dp~~ie~i~~~~~-----~~~~~~~g~~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~---------r~~v~~y 148 (440)
T 3t6c_A 83 LIGKDPARIEDIWQSAA-----VSGYWRNGPVMNNALSGIDMALWDIKGKQAGLPVYELLGGKC---------RDGIALY 148 (440)
T ss_dssp HTTCCTTCHHHHHHHHH-----HTTSCCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCS---------CSSEEEE
T ss_pred HcCCChhhHHHHHHHHH-----HhcccCCCcchhhHHHHHHHHHHHHHHHHcCCcHHHHcCCCC---------CCeeEEE
Confidence 99999998776654322 111111223467899999999999999999999999999986 5789999
Q ss_pred EeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCC---------------------------------------hHHHH
Q 041113 648 ALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRAD---------------------------------------PIKDA 688 (983)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~---------------------------------------~~~d~ 688 (983)
+++ ...+++++++++++++++||++||+|+|.... ++.|+
T Consensus 149 ~~~-~~~~~e~~~~~a~~~~~~Gf~~~K~KvG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 227 (440)
T 3t6c_A 149 VHT-DGADEVEVEDSARAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAYAKSIP 227 (440)
T ss_dssp EEE-CCSSHHHHHHHHHHHHHTTCSEEEECSSSSTTCCBCCHHHHSSCBCCCSSCCCCCCCSSCCSSEECCHHHHHHHHH
T ss_pred EEC-CCCCHHHHHHHHHHHHHcCCCEEEEeeccCCccccccccccccccccccccccccccccccccccccchhhHHHHH
Confidence 887 45789999999999999999999999985210 46889
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCCh
Q 041113 689 EVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDP 766 (983)
Q Consensus 689 ~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~ 766 (983)
++|++||+++|+++.|+||+|++|++++|+++++.|+++++.|||||++ +++++++|++++++||++||++++..+
T Consensus 228 ~~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iEeP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-- 305 (440)
T 3t6c_A 228 RLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLEDPVAPENTEWLKMLRQQSSTPIAMGELFVNVNE-- 305 (440)
T ss_dssp HHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEECSSCGGGGGGHHHHHHHCCSCEEECTTCCSHHH--
T ss_pred HHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCEEECCCChhhHHHHHHHHhhcCCCEEeCcccCCHHH--
Confidence 9999999999999999999999999999999999999999999999999 788899999999999999999999753
Q ss_pred HHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhchhhhhhhhhhcccc
Q 041113 767 LNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLELQNAYLCKVMNRE 844 (983)
Q Consensus 767 ~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~~~~~~~~~~~~~~ 844 (983)
+..+++. .+|++|+|++++|||+++++++++|+++|+++++|++. +|+|++++++||++++||+. . .+
T Consensus 306 ---~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~Ig~aa~~hlaaa~pn~~--~---~E-- 375 (440)
T 3t6c_A 306 ---WKPLIDNKLIDYIRCHISSIGGITPAKKIAIYSELNGVRTAWHSPGDISPIGVCANMHLDLSSPNFG--I---QE-- 375 (440)
T ss_dssp ---HHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHHHHTTCEECCCCSSSSCHHHHHHHHHHHHHCTTBC--C---EE--
T ss_pred ---HHHHHHcCCccceeechhhhCCHHHHHHHHHHHHHcCCEEEeccCCCccHHHHHHHHHHHHhCCCCc--e---Ee--
Confidence 6666654 47999999999999999999999999999998888875 79999999999999999641 1 11
Q ss_pred CCCCCccCccchhcccccCCCCCceeec----cCCCCeeeEEecchhhhhhhcccc
Q 041113 845 LCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEASVAKATHILQNLQIN 896 (983)
Q Consensus 845 ~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~ 896 (983)
+. ....+..|++.+++.+++ +|++|||||++| ++.++++.+.
T Consensus 376 ~~--------~~~~~~~~~~~~~~~~~~G~i~vp~~PGLGveld--~~~l~~~~~~ 421 (440)
T 3t6c_A 376 YT--------PMNDALREVFPGCPEVDQGYAYVNDKPGLGIDIN--EALAAKFPCE 421 (440)
T ss_dssp CC--------CCCHHHHHHSTTCCEEETTEEECCCCSBTSCCCC--HHHHTTSCCC
T ss_pred ec--------CcchhhHhhcCCCceecCCEEECCCCCCCCcccC--HHHHHhcccc
Confidence 10 111123466677888874 999999999999 8888898866
|
| >4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-56 Score=514.43 Aligned_cols=352 Identities=12% Similarity=0.111 Sum_probs=288.3
Q ss_pred CCccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHH-HHHh
Q 041113 488 CSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLR-FLLH 566 (983)
Q Consensus 488 ~~~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~-~~~~ 566 (983)
++|+.++|++|+.+.++ | ..++.++|||+||+|++||||+.+. +..+ .+...++ .++|
T Consensus 21 qsm~~~~It~v~~~~v~-----~------------~~~~~vlV~v~Td~G~~G~GEa~~~-~~~~---~~~~~i~~~lap 79 (421)
T 4hnl_A 21 QSMTPTIITDVKSFAIK-----P------------DRHNLVVVKVETNKGISGLGCSTFQ-FRPL---AVKTVVDEYLRP 79 (421)
T ss_dssp CCCCCCBEEEEEEEEEC-----S------------SSSCEEEEEEEETTSCCEEEECCCT-TSHH---HHHHHHHHTHHH
T ss_pred cccCCceEEEEEEEEEC-----C------------CCceEEEEEEEECCCCEEEEeccCC-CCHH---HHHHHHHHHHHH
Confidence 46777899999988763 1 1257899999999999999998753 2233 2334444 4889
Q ss_pred HhccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEE
Q 041113 567 FMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKI 646 (983)
Q Consensus 567 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~ 646 (983)
.|+|+++.+++.++..+. ........+...+|++|||+|||||+||.+|+|||+||||.. +++||+
T Consensus 80 ~LiG~dp~~ie~i~~~~~-----~~~~~~~~~~~~~A~said~ALwDl~gK~~g~Pl~~LLGG~~---------r~~v~~ 145 (421)
T 4hnl_A 80 LLMGRDANEIEDIWQVMN-----VNSYWRNGPITNNAISGIDMALWDIKGQLADMPLYQLLGGKA---------RTAIPA 145 (421)
T ss_dssp HHTTCBTTCHHHHHHHHH-----HTTSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCS---------SSCEEE
T ss_pred HHCCCChhhHHHHHHHHH-----hhccccCCchHHHHHHHHHHHHHHHHHHHhCCCHHHhcCCcc---------Ccccce
Confidence 999999998776654221 111112234567899999999999999999999999999987 678999
Q ss_pred EEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCC----------------------ChHHHHHHHHHHHHHcCCCcEE
Q 041113 647 CALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRA----------------------DPIKDAEVIQEVRKKVGHRIEL 704 (983)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~----------------------~~~~d~~~v~~vr~~~g~~~~l 704 (983)
|++.. ..+++++.+++++++++||+++|+|+|... +++.|+++++++|+++|+++.|
T Consensus 146 y~~~~-~~~~~~~~~~a~~~~~~G~~~~K~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~G~~~~l 224 (421)
T 4hnl_A 146 YTHAV-ADNLDDLYHEIDRFLAAGYRYIRCQLGFYGGNPSQLQTPEEPISGSYFDQTDYMETTLKMFAAIKEKYGNQFQM 224 (421)
T ss_dssp EEEEE-ESSHHHHHHHHHHHHHTTCSEEEEEESCCCCCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTSSEE
T ss_pred ecccC-CCCHHHHHHHHHHHHHhhHHHHhhccccccCCchhccccccccccccccchhHHHHHHHHHHHHHHHhCCCceE
Confidence 98874 468999999999999999999999998521 2578999999999999999999
Q ss_pred EEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEE
Q 041113 705 RVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAI 781 (983)
Q Consensus 705 ~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i 781 (983)
++|+|++||+++|+++++.|+++++.|||||++ |++++++|++++++||++||++++..+ +..+++. .+|++
T Consensus 225 ~vDan~~~~~~~A~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~-----~~~~i~~~a~d~v 299 (421)
T 4hnl_A 225 LHDVHERLHPNQAIQFAKAAEPYQLFFLEDILPPDQSHWLTQLRSQSATPIATGELFNNPME-----WQELVKNRQIDFM 299 (421)
T ss_dssp EEECTTCSCHHHHHHHHHHHGGGCCSEEECCSCGGGGGGHHHHHTTCCCCEEECTTCCSGGG-----THHHHHTTCCSEE
T ss_pred eccccccCCHHHHHHHHHHhhhhhhcccccCCcccchHHHHHHHhcCCCCeecCcceehhHH-----HHHHHhcCCceEE
Confidence 999999999999999999999999999999998 788999999999999999999999875 5555554 47999
Q ss_pred EEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCc-hHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhccc
Q 041113 782 VIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFE-SGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLK 860 (983)
Q Consensus 782 ~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~e-s~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 860 (983)
|+|++++||||++++++++|+++|++++.|++.+ ++|++++++|++++++|+. . .+. +.. .++.
T Consensus 300 ~~d~~~~GGite~~~ia~~A~~~gi~v~~h~~~~~s~i~~aa~~hl~aa~~n~~--~---~e~---------~~~-~~~~ 364 (421)
T 4hnl_A 300 RAHVSQIGGITPALKLAHFCDAMGVRIAWHTPSDISPVGLAVNTHLNIHLHNAA--I---QET---------IEL-PANT 364 (421)
T ss_dssp CCCGGGGTSHHHHHHHHHHHHHTTCEECCCCCSSSCHHHHHHHHHHHHHCTTBC--C---EEC---------CCC-CHHH
T ss_pred EeCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCcchhHHHHHHHHHHHHhCCCCc--c---ccc---------cCc-chhh
Confidence 9999999999999999999999999988888776 7899999999999999742 1 110 111 2233
Q ss_pred ccCCCCCceeec----cCCCCeeeEEecchhhhhhhccccc
Q 041113 861 EDVTTDPISICH----NSCRGFVEASVAKATHILQNLQINN 897 (983)
Q Consensus 861 ~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~~ 897 (983)
++++.+++.+++ +|++|||||++| ++.++++.+..
T Consensus 365 ~~~~~~~~~~~~G~i~~p~~PGLGveld--~~~l~~y~~~~ 403 (421)
T 4hnl_A 365 QSVFVGSPQPKGGFFYPMEKSGIGITFD--EEAAADFPVVY 403 (421)
T ss_dssp HHHEECCCCCBTTEECCCCSSBSCCEEC--HHHHTTCBCCC
T ss_pred hhhccCCCeEECCEEECCCCCCCCeeEC--HHHHhhccccc
Confidence 455566677773 999999999999 89999998654
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-56 Score=505.35 Aligned_cols=355 Identities=17% Similarity=0.158 Sum_probs=301.7
Q ss_pred eeEeEEEEEEEEeeCCCCCcccccc--ccCcceeeeEEEEEEEECCCCEEEEeecCc-C-cCcccHHHHHHHHHHHHhHh
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYID--HNRSRFCREGFILSLYLEDGSVGYGEVAPL-E-IHKENLLDAEEQLRFLLHFM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~--~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~-~-~~~~~~~~~~~~l~~~~~~l 568 (983)
|||++|+++.+++|++.||.++.+. . ..++.++|+|+|++|++||||+.+. + ++.++...+...++.++|.|
T Consensus 3 mkI~~i~~~~~~~pl~~p~~~s~~~~~~----~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~l~~l~~~l 78 (378)
T 2qdd_A 3 LRITRLTVFHLDLPLAKPYWLSGGRLKF----DRLDSTYLRIDTDEGVTGWGEGCPWGHSYLPAHGPGLRAGIATLAPHL 78 (378)
T ss_dssp CCEEEEEEEEEEEEEEEEEECCC--CEE----EEEEEEEEEEEETTSCEEEEEECCSTTTSSSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEEeccccCceecccCcccc----cccceEEEEEEECCCCEEEEEEecCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999888764 3 3488999999999999999999876 4 44667767777788899999
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA 648 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~ 648 (983)
+|+++.++..++..+ ...+ .+ .++|++|||+||||++||..|+|||+||||.. +++||+|+
T Consensus 79 ~g~d~~~~~~~~~~l-----~~~~----~g-~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~---------~~~v~~~~ 139 (378)
T 2qdd_A 79 LGLDPRSLDHVNRVM-----DLQL----PG-HSYVKSPIDMACWDILGQVAGLPLWQLLGGEA---------ATPVPINS 139 (378)
T ss_dssp TTCCTTCHHHHHHHH-----HHHS----CS-CHHHHHHHHHHHHHHHHHHHTCBHHHHTTCSS---------CCCEEBEE
T ss_pred CCCCccCHHHHHHHH-----HHhh----cc-chHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC---------CCCCceEE
Confidence 999988765554321 1111 11 57899999999999999999999999999975 46799998
Q ss_pred eecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCC
Q 041113 649 LIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD 728 (983)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~ 728 (983)
++. ..+++++.+.+++++++||++||+|+|.+ +++.|+++|++||+++|+++.|++|+|++||.++|+++++.|+ ++
T Consensus 140 ~~~-~~~~e~~~~~a~~~~~~Gf~~iKik~g~~-~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~-~~ 216 (378)
T 2qdd_A 140 SIS-TGTPDQMLGLIAEAAAQGYRTHSAKIGGS-DPAQDIARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVR-AR 216 (378)
T ss_dssp EEC-SCCHHHHHHHHHHHHHHTCCEEEEECCSS-CHHHHHHHHHHHHHSCCTTCEEEEECTTCCCHHHHHHHHTSCC-CC
T ss_pred Eec-CCCHHHHHHHHHHHHHHhhhheeecCCCC-ChHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHhC-CC
Confidence 873 46899999999999999999999999963 6899999999999999999999999999999999999999999 99
Q ss_pred CceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHcCCc
Q 041113 729 LQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRHGKM 807 (983)
Q Consensus 729 i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~ 807 (983)
+ |||||+++++.+++|++++++||++||++.+.. .+..+++ ..+|++++|++++||++++++++++|+++|++
T Consensus 217 i-~iEqP~~d~~~~~~l~~~~~iPI~~dE~~~~~~-----~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~g~~ 290 (378)
T 2qdd_A 217 D-WIEQPCQTLDQCAHVARRVANPIMLDECLHEFS-----DHLAAWSRGACEGVKIKPNRVGGLTRARQIRDFGVSVGWQ 290 (378)
T ss_dssp C-EEECCSSSHHHHHHHHTTCCSCEEECTTCCSHH-----HHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCE
T ss_pred c-EEEcCCCCHHHHHHHHHhCCCCEEECCCcCCHH-----HHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCe
Confidence 9 999999989999999999999999999999865 3555554 45799999999999999999999999999999
Q ss_pred EEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCC-Cceeec----cCCCCeeeEE
Q 041113 808 AVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTD-PISICH----NSCRGFVEAS 882 (983)
Q Consensus 808 ~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~-p~~~~~----~P~~pGlGv~ 882 (983)
+++|+++||+|++++++|++++++|.. + ...+++ ..++..|++.+ |+.+++ +|++||||++
T Consensus 291 ~~~~~~~es~i~~aa~~hlaaa~~~~~--~----------~~~~d~--~~~~~~d~~~~~~~~~~~G~~~~p~~PGlGv~ 356 (378)
T 2qdd_A 291 MHIEDVGGTALADTAALHLAASTPEAN--R----------LASWLG--HAHLADDPIPGQGARNRDGLATPPSAPGLGVI 356 (378)
T ss_dssp EEECCSSCCHHHHHHHHHHHHTSCTTT--B----------CCBCCG--GGGBSCCSSTTCSCCCBTTEECCCCSSBTCCC
T ss_pred EEecCCCCcHHHHHHHHHHHHcCCCcc--e----------eccccc--cchhhhccccCCCceEECCEEECCCCCcCCCc
Confidence 999999999999999999999998631 1 111223 23667888888 888874 8999999999
Q ss_pred ecchhhhhhhccc
Q 041113 883 VAKATHILQNLQI 895 (983)
Q Consensus 883 ~d~a~~~~~~~~~ 895 (983)
+| ++.++++..
T Consensus 357 ~d--~~~l~~~~~ 367 (378)
T 2qdd_A 357 PD--PEALGRPVA 367 (378)
T ss_dssp CC--GGGSCSCSE
T ss_pred cC--HHHHhccee
Confidence 99 777666554
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-56 Score=507.48 Aligned_cols=355 Identities=17% Similarity=0.200 Sum_probs=297.3
Q ss_pred ccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHH-HHhHh
Q 041113 490 LSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRF-LLHFM 568 (983)
Q Consensus 490 ~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~-~~~~l 568 (983)
|++|||++|+++.+++|++.||.++.+.+ ..++.++|+|+|++|++||||+.+ .++ .+...++. ++|.|
T Consensus 1 ~~~mkI~~i~~~~~~~pl~~p~~~s~~~~----~~~~~~~V~v~td~G~~G~GE~~g----~~~--~~~~~i~~~l~~~l 70 (382)
T 2gdq_A 1 MALVKIVRIETFPLFHRLEKPYGDANGFK----RYRTCYLIRIITESGIDGWGECVD----WLP--ALHVGFTKRIIPFL 70 (382)
T ss_dssp --CCBEEEEEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEEETTSCEEEEEECS----CHH--HHHHHHHHTHHHHH
T ss_pred CCCCEEEEEEEEEEecccCccccccccee----ccCcEEEEEEEECCCCEEEEeecC----chH--HHHHHHHHHHHHHh
Confidence 55689999999999999999999988754 348899999999999999999973 121 24555665 89999
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA 648 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~ 648 (983)
+|+++.++..++.. +.. ..++|++|||+||||++||.+|+|||+||||.. +++||+|+
T Consensus 71 ~G~d~~~~~~~~~~-----l~~--------~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~---------~~~vp~~~ 128 (382)
T 2gdq_A 71 LGKQAGSRLSLVRT-----IQK--------WHQRAASAVSMALTEIAAKAADCSVCELWGGRY---------REEIPVYA 128 (382)
T ss_dssp TTSBTTCHHHHHHH-----HHH--------HCHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCS---------CSEEEEEE
T ss_pred cCCCcccHHHHHHH-----HHH--------HHhHHHHHHHHHHHHHHHHHcCCcHHHHcCCCC---------CCceeEEE
Confidence 99998775544321 111 126899999999999999999999999999975 46899998
Q ss_pred eec-CCCCH---HHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhc
Q 041113 649 LID-SNKSP---VEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLI 724 (983)
Q Consensus 649 ~~~-~~~~~---~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l 724 (983)
+++ ...++ +++.+.+++++++||++||+|+|. .+++.|+++|++||+++|+++.|++|+|++|+.++|+++++.|
T Consensus 129 ~~g~~~~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~-~~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l 207 (382)
T 2gdq_A 129 SFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIGG-TSFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYF 207 (382)
T ss_dssp ECCCBCSSTTHHHHHHHHHHHHHTTTCCEEEEECSS-SCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHH
T ss_pred EecccCCCcccHHHHHHHHHHHHHcCCCEEEEcCCC-CCHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 752 23578 999999999999999999999996 3789999999999999999999999999999999999999999
Q ss_pred ccC-CCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHH
Q 041113 725 KDC-DLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARW 800 (983)
Q Consensus 725 ~~~-~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~ 800 (983)
+++ ++.|||||++ +++++++|++++++||++||++.+.. .+..+++. .+|++++|++++||++++++++++
T Consensus 208 ~~~~~i~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~-----~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~ 282 (382)
T 2gdq_A 208 SEWTNIGWLEEPLPFDQPQDYAMLRSRLSVPVAGGENMKGPA-----QYVPLLSQRCLDIIQPDVMHVNGIDEFRDCLQL 282 (382)
T ss_dssp TTCSCEEEEECCSCSSCHHHHHHHHTTCSSCEEECTTCCSHH-----HHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHH
T ss_pred hhccCCeEEECCCCcccHHHHHHHHhhCCCCEEecCCcCCHH-----HHHHHHHcCCCCEEecCccccCCHHHHHHHHHH
Confidence 999 9999999998 78999999999999999999999865 36666654 479999999999999999999999
Q ss_pred HHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCce------eec--
Q 041113 801 AQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPIS------ICH-- 872 (983)
Q Consensus 801 A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~------~~~-- 872 (983)
|+++|+++++| ++|+++++++++|++++++|. .+ ++++.+..+.+|++.+|+. +++
T Consensus 283 A~~~g~~~~~~-~~es~i~~~a~l~laa~~~~~-------~e--------~~~d~~~~~~~d~~~~~~~~~~~~~~~~G~ 346 (382)
T 2gdq_A 283 ARYFGVRASAH-AYDGSLSRLYALFAQACLPPW-------SK--------MKNDHIEPIEWDVMENPFTDLVSLQPSKGM 346 (382)
T ss_dssp HHHHTCEECCC-CSSCSHHHHHHHHHHHTSCCS-------SS--------CTTSCSCCEEEECSSCGGGGGBCCCCBTTE
T ss_pred HHHcCCEEeec-CCCcHHHHHHHHHHHHhCchH-------hh--------ccccccccHHHHHhcccccccccccccCCE
Confidence 99999998877 999999999999999998852 00 1112211146788878887 773
Q ss_pred --cCCCCeeeEEecchhhhhhhcccccccc
Q 041113 873 --NSCRGFVEASVAKATHILQNLQINNDVI 900 (983)
Q Consensus 873 --~P~~pGlGv~~d~a~~~~~~~~~~~~~i 900 (983)
+|++||||+++| ++.++++......+
T Consensus 347 ~~~p~~PGlGv~~d--~~~l~~~~~~~~~~ 374 (382)
T 2gdq_A 347 VHIPKGKGIGTEIN--MEIVNRYKWDGSAY 374 (382)
T ss_dssp EECCCSSBTSSCBC--HHHHHHTBCCSCCC
T ss_pred EECCCCCCCCceeC--HHHHHhhhccCccc
Confidence 899999999999 88888887665443
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-55 Score=504.07 Aligned_cols=347 Identities=14% Similarity=0.096 Sum_probs=284.5
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAK 572 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~ 572 (983)
|||++|+++.+..+ .++.++|||+||+|++||||+.+. +..+++ ...++.+.|.|+|++
T Consensus 3 MkI~~i~~~~~~~~-----------------~~~~~~V~v~td~G~~G~GE~~~~-~~~~~~---~~~i~~l~p~liG~d 61 (409)
T 3go2_A 3 LKVVSVDTLCCDAG-----------------WRNYHFVKLTTDEGIVGWSEFDEG-FGSPGV---TAVIEQLGKRLVGAS 61 (409)
T ss_dssp CBEEEEEEEEEECS-----------------SSEEEEEEEEETTCCEEEEEECST-TTCTTH---HHHHHHHHHHHTTSB
T ss_pred CEEEEEEEEEECCC-----------------CccEEEEEEEECCCCEEEEeecCC-CCcHHH---HHHHHHHHHHhcCCC
Confidence 89999998877521 157899999999999999998763 333433 345567999999999
Q ss_pred ccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeec-
Q 041113 573 ISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALID- 651 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~- 651 (983)
+.+++.++..++. .......+...+|++|||+|||||+||.+|+|||+||||.. +++|++|++..
T Consensus 62 ~~~~e~~~~~~~~-----~~~~~~~g~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~---------r~~v~~y~s~~~ 127 (409)
T 3go2_A 62 VMEHERFFAEAYC-----LTRPATGGVVSEGIGAIENALLDAKAKTLNVPCYELLGGKL---------RDRVPVYWSHCP 127 (409)
T ss_dssp TTCHHHHHHHHHH-----HHGGGCSHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTTCCS---------CSEEEEEECSTT
T ss_pred hhhHHHHHHHHHH-----HhccCCchHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCCC---------CCeEEEEEeecC
Confidence 9987766643321 11111234567899999999999999999999999999976 58899997631
Q ss_pred ------------CCCCHHHHHHHHHHhhhcCCCEEEEec-------------cCC----C-------ChHHHHHHHHHHH
Q 041113 652 ------------SNKSPVEVASIATTLVEEGFTAIKLKV-------------ARR----A-------DPIKDAEVIQEVR 695 (983)
Q Consensus 652 ------------~~~~~~~~~~~~~~~~~~G~~~~KiKi-------------g~~----~-------~~~~d~~~v~~vr 695 (983)
...+++++++.+++++++||++||+|+ |.. . ..+.|+++|++||
T Consensus 128 ~~~i~~~~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKlKv~~~~~~~~~~~~pG~~~~~~~~~~~~~~~~~~~~e~v~avR 207 (409)
T 3go2_A 128 TWRINHPKFFGPPVTDLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNVDRKVLRNLRAHLEALR 207 (409)
T ss_dssp HHHHHCTTTSSSCCCSHHHHHHHHHHHHHTTCCEEEECCEECSSSSCEECBGGGTBSCCTTCCCCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCHHHHHHHHHHHHHcCCCEEEEcccccccccccccccCCCccCCcccccchHHHHHHHHHHHHHH
Confidence 245899999999999999999999999 531 0 1356899999999
Q ss_pred HHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC
Q 041113 696 KKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH 775 (983)
Q Consensus 696 ~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~ 775 (983)
+++|+++.|++|+|++||.++|+++++.|+++++.|||||+.+++++++|++++++||++||++.+.. .+..+++
T Consensus 208 ~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE~P~~d~~~~~~l~~~~~iPIa~dE~~~~~~-----~~~~~i~ 282 (409)
T 3go2_A 208 DGAGPDVEILLDLNFNAKPEGYLKILRELADFDLFWVEIDSYSPQGLAYVRNHSPHPISSCETLFGIR-----EFKPFFD 282 (409)
T ss_dssp HHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCCSEEECCCSCHHHHHHHHHTCSSCEEECTTCCHHH-----HHHHHHH
T ss_pred HHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCeEEEeCcCCHHHHHHHHhhCCCCEEeCCCcCCHH-----HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999875 3666665
Q ss_pred C-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCcc
Q 041113 776 P-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLG 854 (983)
Q Consensus 776 ~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~ 854 (983)
. .+|++|+|+++ ||++++++++++|+++|++++. |+++++|++++++||++++||+. +.+++ ++
T Consensus 283 ~~~~d~v~~k~~~-GGit~~~~ia~~A~~~gi~~~~-h~~~s~i~~aa~~hlaaa~p~~~-----~~E~~--------~~ 347 (409)
T 3go2_A 283 ANAVDVAIVDTIW-NGVWQSMKIAAFADAHDINVAP-HNFYGHLCTMINANFAAAVPNLR-----IMETD--------ID 347 (409)
T ss_dssp TTCCSEEEECHHH-HCHHHHHHHHHHHHHTTCEEEE-CCCSCHHHHHHHHHHHHHCSSBC-----CEEEC--------CC
T ss_pred hCCCCEEEeCCCC-CCHHHHHHHHHHHHHcCCEEee-cCCCcHHHHHHHHHHHHcCCCCe-----EEEee--------CC
Confidence 4 47999999999 9999999999999999999886 67999999999999999999641 11111 12
Q ss_pred chhcccccCCCCCceeec----cCCCCeeeEEecchhhhhhhccccc
Q 041113 855 TYQWLKEDVTTDPISICH----NSCRGFVEASVAKATHILQNLQINN 897 (983)
Q Consensus 855 ~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~~ 897 (983)
. ..+.+|++.+|+.+++ +|++|||||++| ++.++++....
T Consensus 348 ~-~~~~~d~~~~~~~~~~G~i~~p~~PGlGveld--~~~l~~~~~~~ 391 (409)
T 3go2_A 348 R-LAWEDELFTHAPEYQNGELIIPDRPGWGTDPV--EEAILAHPPKV 391 (409)
T ss_dssp C-CTTHHHHBSCCCCEETTEEECCCSSBSSCCBC--HHHHHHSCC--
T ss_pred c-chhhhhhccCCCeeECCEEECCCCCCCCcccC--HHHHHhCcCCC
Confidence 2 2345677778888874 999999999999 88888887554
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-56 Score=504.93 Aligned_cols=349 Identities=15% Similarity=0.148 Sum_probs=279.5
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAK 572 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~ 572 (983)
|||++|+++.+ | .+.++|||+||+|++||||+.+.. . ...+...++.+.|.|+|++
T Consensus 2 MkIt~i~~~~~--~------------------~~~~~V~v~td~G~~G~GE~~~~g-~---~~~~~~~i~~l~p~liG~d 57 (405)
T 3rr1_A 2 VKITRLTTYRL--P------------------PRWMFLKVETDEGVTGWGEPVIEG-R---ARTVEAAVHELSDYLIGQD 57 (405)
T ss_dssp CCEEEEEEEEE--T------------------TTEEEEEEEETTSCEEEECCCCTT-C---HHHHHHHHHHHGGGTTTSC
T ss_pred CeEEEEEEEEE--C------------------CCEEEEEEEECCCCEEEEeCCCCC-C---HHHHHHHHHHHHHHHCCCC
Confidence 89999998876 1 123799999999999999998653 1 2334456677999999999
Q ss_pred ccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecC
Q 041113 573 ISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDS 652 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~ 652 (983)
+.+++.++..+. ........+...+|++|||+|||||+||.+|+|||+||||.. +++||+|+++ +
T Consensus 58 p~~~e~~~~~l~-----~~~~~~g~~~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~---------r~~v~~y~~~-~ 122 (405)
T 3rr1_A 58 PSRINDLWQTMY-----RAGFYRGGPILMSAIAGIDQALWDIKGKVLGVPVYELLGGLV---------RDKMRTYSWV-G 122 (405)
T ss_dssp TTCHHHHHHHHH-----HTSSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCS---------CSCEEEEEEC-C
T ss_pred cccHHHHHHHHH-----HhhcccCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHhCccc---------cCceeeeEeC-C
Confidence 988766654322 111112223467899999999999999999999999999986 5789999987 4
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCC--------ChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhc
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRA--------DPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLI 724 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~--------~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l 724 (983)
..+++++++++++++++||++||+ +|.+. ++++|+++|++||+++|+++.|++|+|++||+++|+++++.|
T Consensus 123 ~~~~e~~~~~a~~~~~~G~~~iKl-~G~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~L 201 (405)
T 3rr1_A 123 GDRPADVIAGMKALQAGGFDHFKL-NGCEEMGIIDTSRAVDAAVARVAEIRSAFGNTVEFGLDFHGRVSAPMAKVLIKEL 201 (405)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEE-ESCCSSSCBCSHHHHHHHHHHHHHHHHTTGGGSEEEEECCSCBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE-ecCCcccccccchhHHHHHHHHHHHHHHhCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999999 77521 267899999999999999999999999999999999999999
Q ss_pred ccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHH
Q 041113 725 KDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWA 801 (983)
Q Consensus 725 ~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A 801 (983)
+++++.|||||++ +++++++|++++++||++||++.+..+ +..+++ ..+|++++|++++|||+++++++++|
T Consensus 202 ~~~~i~~iEeP~~~~d~~~~~~l~~~~~iPIa~dE~i~~~~~-----~~~~l~~~a~d~v~~d~~~~GGitea~kia~lA 276 (405)
T 3rr1_A 202 EPYRPLFIEEPVLAEQAETYARLAAHTHLPIAAGERMFSRFD-----FKRVLEAGGVSILQPDLSHAGGITECVKIAAMA 276 (405)
T ss_dssp GGGCCSCEECSSCCSSTHHHHHHHTTCSSCEEECTTCCSHHH-----HHHHHHHCCCSEECCBTTTTTHHHHHHHHHHHH
T ss_pred HhcCCCEEECCCCcccHHHHHHHHhcCCCCEEecCCcCCHHH-----HHHHHHHhCCCeEEEChhhcCCHHHHHHHHHHH
Confidence 9999999999998 789999999999999999999998753 556665 45799999999999999999999999
Q ss_pred HHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCC
Q 041113 802 QRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRG 877 (983)
Q Consensus 802 ~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~p 877 (983)
+++|+++++|+ ++++|++++++|++++++|+ .+ .++.+ +..+.. ...++......+|+.+++ +|++|
T Consensus 277 ~~~gi~v~~h~-~~s~i~~aa~~hlaaa~pn~--~~---~e~~~--~~~~~~-~~~~~~~~~~~~~~~~~~G~i~vp~~P 347 (405)
T 3rr1_A 277 EAYDVALAPHC-PLGPIALAACLHVDFVSWNA--TL---QEQSM--GIHYNK-GAELLDYVRNKADFALEGGYIRPPRLP 347 (405)
T ss_dssp HTTTCEECCBC-CSCHHHHHHHHHHHHHCTTB--CC---EEECC-----------CGGGGBSCGGGGCEETTEECCCCSS
T ss_pred HHcCCEEEeCC-CCcHHHHHHHHHHHHhCCCc--ee---eeecc--cccccc-chhhhhhcccCCCceeeCCEEECCCCC
Confidence 99999987665 68999999999999999964 11 11110 000000 011222111123677763 99999
Q ss_pred eeeEEecchhhhhhhccccc
Q 041113 878 FVEASVAKATHILQNLQINN 897 (983)
Q Consensus 878 GlGv~~d~a~~~~~~~~~~~ 897 (983)
||||++| ++.++++....
T Consensus 348 GLGveld--~~~l~~~~~~~ 365 (405)
T 3rr1_A 348 GLGVDID--EALVIERSKEA 365 (405)
T ss_dssp BTSCCBC--HHHHHHHHHSC
T ss_pred cCCcccC--HHHHHhhhccc
Confidence 9999999 88888887653
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-55 Score=526.75 Aligned_cols=416 Identities=28% Similarity=0.445 Sum_probs=299.4
Q ss_pred HHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHHH
Q 041113 3 LTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLEL 82 (983)
Q Consensus 3 ~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 82 (983)
.+++++||+.|.++|||||||+||+|+++.+..... .+.. ..+......... +.+.++++.+++++++
T Consensus 153 ~~~l~~A~~~A~~gr~GPV~l~iP~d~~~~~~~~~~---------~~~~-~~~~~~~~~~~~--~~~~~~~~~i~~~~~~ 220 (578)
T 3lq1_A 153 KWHGSRAVDIAMKTPRGPVHLNFPLREPLVPILEPS---------PFTA-TGKKHHHVHIYY--THEVLDDSSIQKMVTE 220 (578)
T ss_dssp HHHHHHHHHHHHSSSCCCEEEEEECCSCCCCCCSSC---------CC-------------CC--EEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCcEEEECccCCCCCCCcccc---------hhcc-cCcccccccccc--CccCCChHHHHHHHHH
Confidence 458999999999999999999999998765421100 0000 000000000000 1224567789999999
Q ss_pred HhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCCC
Q 041113 83 VQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFD 162 (983)
Q Consensus 83 L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~aD 162 (983)
|++ |||+|++|+|+..++.+++++|||++|+||++|++++ |+.+|++||++ +|.++..+...+...+.+||
T Consensus 221 L~~-~rPvIl~G~g~~~~~~~~l~~lae~~~~PV~~t~~~~------~~~~~~~hp~~--~g~~~~~~~~~~~~~~~~aD 291 (578)
T 3lq1_A 221 CTG-KKGVFVVGPIDKKELEQPMVDLAKKLGWPILADPLSG------LRSYGALDEVV--IDQYDAFLKEAEIIDKLTPE 291 (578)
T ss_dssp TTT-SCEEEEECSCCCTTCHHHHHHHHHHHTCCEEECGGGS------TTSBSSCCSSE--ECCHHHHTTSHHHHHHTCCS
T ss_pred hcc-CCeEEEECCCCChHHHHHHHHHHHhcCcEEEEecCCC------CCCCCCCCccc--cccHHHHhcCccccccCCCC
Confidence 999 9999999999875556899999999999999998766 68999999995 78888776666656678999
Q ss_pred EEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCC-ChhHHHHHHHHHHH
Q 041113 163 VIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHR-SSKWCSFLRALDMM 241 (983)
Q Consensus 163 lvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~-~~~w~~~~~~~~~~ 241 (983)
+||.+|+++.+..+..|....++.++||||+|+.++++++.+++.|++|++.++++|.+.+.... ...|.+.+.+.+..
T Consensus 292 lvl~~G~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~ 371 (578)
T 3lq1_A 292 VVIRFGSMPVSKPLKNWLEQLSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMPDDAKDAAWLNGWTSYNKV 371 (578)
T ss_dssp EEEEESSCCSCHHHHHHHHHCCSSEEEEECTTCCCCCTTCCCSEEECSCHHHHHHHHHHHSCSTTCCHHHHHHHHHHHHH
T ss_pred EEEEeCCcccchhHHHHHhcCCCCEEEEECCCCCcCCCCcCceEEEEeCHHHHHHHHHhhccCCCCcHHHHHHHHHHHHH
Confidence 99999999888887777765455689999999999999999999999999999999998775544 56788877665544
Q ss_pred HHH-HHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecC
Q 041113 242 VAS-EISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNR 320 (983)
Q Consensus 242 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 320 (983)
+.. .... .....++++.++++.|.+.+|++++|++++|+++++...+.... ..+ .++.+++
T Consensus 372 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~iv~~~~~~~~~~~~~~~~~~----~~~-------------~~~~~~~ 433 (578)
T 3lq1_A 372 AREIVLAE-MANTTILEEGKIVAELRRLLPDKAGLFIGNSMPIRDVDTYFSQI----DKK-------------IKMLANR 433 (578)
T ss_dssp HHHHHHHH-SCC----CTTHHHHHHHHHSCSEEEEEECSSHHHHHHHHHCCCC----SSE-------------EEEECCC
T ss_pred HhHHHHHh-hhcCCCCCHHHHHHHHHHhCCCCCeEEEeCccHHHHHHHhhccc----CCC-------------ceEEeCC
Confidence 332 2221 12345799999999999999999999999999776654332100 111 2235677
Q ss_pred CCCCccchHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccccc
Q 041113 321 GASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQ 400 (983)
Q Consensus 321 G~mG~~g~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~ 400 (983)
|+||++|++|+|||++++ +++|||++|||||+|++|||+|+++ |++|+++||+||++|+|++.+++... ...+++
T Consensus 434 G~~G~~g~l~~AiGaa~~-~~~vv~i~GDGsf~~~~~eL~ta~~--~~l~~~ivv~NN~~~g~~~~~~~~~~--~~~~~~ 508 (578)
T 3lq1_A 434 GANGIDGVVSSALGASVV-FQPMFLLIGDLSFYHDMNGLLMAKK--YKMNLTIVIVNNDGGGIFSFLPQANE--PKYFES 508 (578)
T ss_dssp SSCCSSSHHHHHHHHTTT-SSSEEEEEEHHHHHHTGGGGHHHHH--TTCCEEEEEECCC---------------------
T ss_pred CccccccHHHHHHHHhcC-CCCEEEEEchHHHHhhHHHHHhhcc--CCCCeEEEEEECCcCccccccccccc--cchhhh
Confidence 899998899999999865 7999999999999999999999999 99999999999999999987533211 123445
Q ss_pred ccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHHH
Q 041113 401 YFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSML 462 (983)
Q Consensus 401 ~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~~ 462 (983)
.+.+.+++||.++|++||+++++|++.+||+++|+++++.++|+||||.++++++...++.+
T Consensus 509 ~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~liev~~~~~~~~~~~~~~ 570 (578)
T 3lq1_A 509 LFGTSTELDFRFAAAFYDADYHEAKSVDELEEAIDKASYHKGLDIIEVKTNRHENKANHQAL 570 (578)
T ss_dssp ------CCCTHHHHHHTTCEEEECCSHHHHHHHHHHHTTSSSEEEEEEC-------------
T ss_pred hccCCCCCCHHHHHHHcCCceEecCCHHHHHHHHHHHHhCCCCEEEEEECCccccHHHHHhh
Confidence 55666789999999999999999999999999999999999999999999998876666554
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-57 Score=500.08 Aligned_cols=328 Identities=19% Similarity=0.216 Sum_probs=275.2
Q ss_pred EEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccC-cccc
Q 041113 497 RMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGA-KISY 575 (983)
Q Consensus 497 ~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~-~~~~ 575 (983)
+++++.+++||+.||.++.+++ ..++.++||| |++|++||||+.+.++++++...+.+.++.+. ++|+ ++.+
T Consensus 2 ~i~~~~~~lpl~~p~~~s~g~~----~~~~~~~V~v-td~G~~G~GE~~~~~~~ge~~~~~~~~l~~~~--l~g~~d~~~ 74 (338)
T 3ijl_A 2 KMTFFPYELKLRHVFTVATYSR----TTTPDVQVEI-EYEGVTGYGEASMPPYLGETVESVMNFLKKVN--LEQFSDPFQ 74 (338)
T ss_dssp CEEEEECCEEEEEEEEETTEEE----EEECEEEEEE-EETTEEEEEEEECCGGGSCCHHHHHHHHTTCC--CTTCCCTTC
T ss_pred eEEEEEEEEeccCcEEeeCcEE----EEeeEEEEEE-EeCCcEEEEeeeCCCCCCCCHHHHHHHHHHHH--hcCCCCccC
Confidence 4788899999999999998764 4589999999 79999999999987766677666555444332 7787 7776
Q ss_pred cccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCCC
Q 041113 576 FLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKS 655 (983)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~ 655 (983)
++.++.. +.... ...++|++|||||||||+||.+|+|||+||||.+ +++++|++..+..+
T Consensus 75 ~e~~~~~-----l~~~~-----~~~~~A~said~ALwDl~gk~~g~Pl~~LlGg~~----------~~v~~~~~~~~~~~ 134 (338)
T 3ijl_A 75 LEDILSY-----VDSLS-----PKDTAAKAAVDIALHDLVGKLLGAPWYKIWGLNK----------EKTPSTTFTIGIDT 134 (338)
T ss_dssp HHHHHHH-----HHHTC-----SCCHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCG----------GGCCBBCCBCCCCC
T ss_pred HHHHHHH-----HHHhc-----cCCHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC----------CCcceEEEEEeCCC
Confidence 6555432 11111 2468999999999999999999999999999975 45665554334578
Q ss_pred HHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCC-HHHHHHHHhhcccCCCceeec
Q 041113 656 PVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWT-YQEALEFGFLIKDCDLQYIEE 734 (983)
Q Consensus 656 ~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~-~~~a~~~~~~l~~~~i~~iEe 734 (983)
++++.++++++++ ||++||+|+|. ++|+++|++||+++| ..||+|+|++|+ +++|+++++.|+++++.||||
T Consensus 135 ~e~~~~~a~~~~~-g~~~~K~Kvg~----~~d~~~v~avR~~~~--~~l~vDaN~~~t~~~~A~~~~~~l~~~~i~~iEe 207 (338)
T 3ijl_A 135 PDVVRAKTKECAG-LFNILKVKLGR----DNDKEMIETIRSVTD--LPIAVDANQGWKDRQYALDMIHWLKEKGIVMIEQ 207 (338)
T ss_dssp HHHHHHHHHHHHT-TCSSEEEECSS----SCHHHHHHHHHTTCC--CCEEEECTTCCCCHHHHHHHHHHHHHTTEEEEEC
T ss_pred HHHHHHHHHHHHh-cccEEEEecCc----HHHHHHHHHHHhhcC--CcEEEECcCCCCCHHHHHHHHHHHhhCCCCEEEC
Confidence 9999999999877 89999999986 369999999999984 699999999995 999999999999999999999
Q ss_pred CCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCC
Q 041113 735 PVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSA 812 (983)
Q Consensus 735 P~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~ 812 (983)
|++ |++++++|++++++|||+||++++..+ +..+. ..+|++|+|++++||++++++++++|+++|+++++||
T Consensus 208 P~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~-----~~~~~-~a~d~i~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~ 281 (338)
T 3ijl_A 208 PMPKEQLDDIAWVTQQSPLPVFADESLQRLGD-----VAALK-GAFTGINIKLMKCTGMREAWKMVTLAHALGMRVMVGC 281 (338)
T ss_dssp CSCTTCHHHHHHHHHTCSSCEEESTTCCSGGG-----TGGGB-TTBSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECC
T ss_pred CCCCCcHHHHHHHHhcCCCCEEECCCCCCHHH-----HHHHH-hhCCEEEecccccCCHHHHHHHHHHHHHcCCEEEecC
Confidence 998 789999999999999999999999875 55555 5689999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeEEe
Q 041113 813 AFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEASV 883 (983)
Q Consensus 813 ~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~ 883 (983)
++|++|++++++|++++++++ .+++..++.+|++. ++.+++ +|++|||||++
T Consensus 282 ~~es~i~~aa~~~la~~~~~~------------------~l~~~~~~~~d~~~-~~~~~~G~i~~p~~PGlGv~l 337 (338)
T 3ijl_A 282 MTETSCAISAASQFSPAVDFA------------------DLDGNLLISNDRFK-GVEVVNGKITLNDLPGIGVMK 337 (338)
T ss_dssp CSCCHHHHHHHHTTGGGCSEE------------------CCCGGGGBSCCCCB-CCEEETTEEECCSCSBTCCBC
T ss_pred CcccHHHHHHHHHHhccCCcc------------------cccchhhhhhcccC-CceeECCEEECCCCCccceee
Confidence 999999999999999987632 23455677888765 477773 99999999985
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-55 Score=500.31 Aligned_cols=359 Identities=18% Similarity=0.246 Sum_probs=297.0
Q ss_pred ccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcc-cHHHHHHHHH-HHHhH
Q 041113 490 LSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKE-NLLDAEEQLR-FLLHF 567 (983)
Q Consensus 490 ~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~-~~~~~~~~l~-~~~~~ 567 (983)
|++|||++|+++.+++|++.||.++.+.. ..++.++|+|+|++|++||||+. . .+ +. +...++ .+.|.
T Consensus 1 m~~mkI~~i~~~~~~~pl~~p~~~s~~~~----~~~~~~~V~v~td~G~~G~Ge~~-~---~~~~~--~~~~i~~~l~~~ 70 (384)
T 2pgw_A 1 MSLVKISNVRVRPLVLPLKQPYHWSYGIR----ESFAVNLIEIEADDGTVGIGECT-V---APDQT--GTAAILYRLAKH 70 (384)
T ss_dssp ---CCEEEEEEEEEEEEEEEEEECSSSEE----EEEEEEEEEEEETTSCEEEEEEE-C---TTCHH--HHHHHHHHHHGG
T ss_pred CCCCEEEEEEEEEEecccCccceecccee----eeceEEEEEEEECCCCEEEEccC-C---CchHH--HHHHHHHHHHHH
Confidence 56699999999999999999999887654 44889999999999999999997 1 23 32 445566 48999
Q ss_pred hccCccccccccccc-CchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEE
Q 041113 568 MTGAKISYFLPLLKG-SFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKI 646 (983)
Q Consensus 568 l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~ 646 (983)
|+|+++.++..++.. ++....+ .+.......++|++|||+||||++||.+|+|||+||||.. +++||+
T Consensus 71 l~g~d~~~~~~~~~~~l~~~~~~--~g~~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~---------~~~v~~ 139 (384)
T 2pgw_A 71 LVGHSPHDVAPLIARIFHQEYLG--HGANIMRAANQIFSGIDMAMWDLQGKLAGLPVHQLLGGAH---------RKAVGY 139 (384)
T ss_dssp GTTSCGGGHHHHHHHHHHHHTGG--GTCCCHHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTTCCS---------SSEEEB
T ss_pred HCCCChhHHHHHHHHHHHHHhhh--cccccccccHHHHHHHHHHHHHHHHhHcCCCHHHHcCCCC---------CCceEE
Confidence 999998876655432 2111111 0100001157899999999999999999999999999975 478999
Q ss_pred EEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhccc
Q 041113 647 CALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD 726 (983)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~ 726 (983)
|++++ ..+++++.+.+++++++||+.||+|+|. +++.|+++|++||+++| ++.|++|+|++|+.++|+++++.|++
T Consensus 140 ~~~~~-~~~~e~~~~~a~~~~~~Gf~~iKik~g~--~~~~~~e~v~avr~a~g-d~~l~vD~n~~~~~~~a~~~~~~l~~ 215 (384)
T 2pgw_A 140 FYFLQ-GETAEELARDAAVGHAQGERVFYLKVGR--GEKLDLEITAAVRGEIG-DARLRLDANEGWSVHDAINMCRKLEK 215 (384)
T ss_dssp CEECC-CSSHHHHHHHHHHHHHTTCCEEEEECCS--CHHHHHHHHHHHHTTST-TCEEEEECTTCCCHHHHHHHHHHHGG
T ss_pred EEECC-CCCHHHHHHHHHHHHHcCCCEEEECcCC--CHHHHHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHHHHHh
Confidence 97763 4689999999999999999999999996 68999999999999999 99999999999999999999999999
Q ss_pred CCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHH
Q 041113 727 CDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQR 803 (983)
Q Consensus 727 ~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~ 803 (983)
+++.|||||++ +++.++++++++++||++||++.+.. .+..+++. .+|++++|++++||++++++++++|++
T Consensus 216 ~~i~~iEqP~~~~~~~~~~~l~~~~~iPI~~de~i~~~~-----~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~ 290 (384)
T 2pgw_A 216 YDIEFIEQPTVSWSIPAMAHVREKVGIPIVADQAAFTLY-----DVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEA 290 (384)
T ss_dssp GCCSEEECCSCTTCHHHHHHHHHHCSSCEEESTTCCSHH-----HHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHH
T ss_pred cCCCEEeCCCChhhHHHHHHHHhhCCCCEEEeCCcCCHH-----HHHHHHHcCCCCEEEEcchhhCCHHHHHHHHHHHHH
Confidence 99999999998 78899999999999999999999865 35665554 579999999999999999999999999
Q ss_pred cCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccC-ccchhcccccCCCC-Cceeec----cCCCC
Q 041113 804 HGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQG-LGTYQWLKEDVTTD-PISICH----NSCRG 877 (983)
Q Consensus 804 ~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~d~~~~-p~~~~~----~P~~p 877 (983)
+|+++++|+|+|++|++++++|++++++|+. ..++ +++. +..|++.+ |+.+++ +|++|
T Consensus 291 ~g~~~~~~~~~es~i~~aa~~hlaaa~~~~~--------------~~~~~~~~~--~~~d~~~~~~~~~~~G~~~~p~~P 354 (384)
T 2pgw_A 291 AGLKICIHSSFTTGITTCAEHHIGLAIPNLD--------------DGNQIMWQL--VQEDIVSSPDLTPKNGWLDAFRKP 354 (384)
T ss_dssp TTCCEEECCCSCCHHHHHHHHHHHHHCSSBC--------------SSBCCCGGG--BSSCSEEESCCCCBTTEEECCCSS
T ss_pred CCCeEeeccCcCCHHHHHHHHHHHHhCCCcc--------------cccccccCc--hhhhhccCCCceEECCEEECCCCC
Confidence 9999999999999999999999999998631 1111 2233 36677766 787773 89999
Q ss_pred eeeEEecchhhhhhhcccc
Q 041113 878 FVEASVAKATHILQNLQIN 896 (983)
Q Consensus 878 GlGv~~d~a~~~~~~~~~~ 896 (983)
|||+++| ++.++++...
T Consensus 355 GlGv~~d--~~~l~~~~~~ 371 (384)
T 2pgw_A 355 GLGFQLA--EDLVAEGEGR 371 (384)
T ss_dssp BTCCEEC--HHHHHHHHHH
T ss_pred cCCCcCC--HHHHHHhhhh
Confidence 9999999 8888887654
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-55 Score=505.76 Aligned_cols=373 Identities=15% Similarity=0.151 Sum_probs=285.4
Q ss_pred CccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECC--CCEEEEeecCcCcCcccHHHHHHHHHHHHh
Q 041113 489 SLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLED--GSVGYGEVAPLEIHKENLLDAEEQLRFLLH 566 (983)
Q Consensus 489 ~~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~--G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~ 566 (983)
+|++|||++|+++.+++|++.|+..+.+.++ ....+.++|+|+||+ |++||||+.+.+... ..+...++.+.|
T Consensus 1 ~m~~mkI~~i~~~~v~~p~~~~~~~s~~~~~--~~~~~~~~V~i~Td~~dG~~G~Ge~~~~g~~~---~~~~~~i~~l~~ 75 (441)
T 4a35_A 1 SMVRGRISRLSVRDVRFPTSLGGHGADAMHT--DPDYSAAYVVIETDAEDGIKGCGITFTLGKGT---EVVVCAVNALAH 75 (441)
T ss_dssp CCCCCBEEEEEEEEEECCGGGTTCCCCSSCS--SCCCEEEEEEEEESSCSCCCEEEEEEECSTTH---HHHHHHHHHHGG
T ss_pred CCCCCEEEEEEEEEEEecCCCCCCCccceec--cCcceEEEEEEEECCCCCCEEEEeeeCCCCCh---HHHHHHHHHHHH
Confidence 4788999999999999999888765443321 123678999999998 999999998754322 233445678999
Q ss_pred HhccCcccccccccccCchhhhhh-----hcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCcccccccc--
Q 041113 567 FMTGAKISYFLPLLKGSFSSWIWS-----TLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISK-- 639 (983)
Q Consensus 567 ~l~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~-- 639 (983)
.|+|+++.++..++..... .+.. ..+ +..+...+|+||||+|||||+||.+|+|||+||||..+ +.++.
T Consensus 76 ~liG~d~~~i~~~~~~~~~-~l~~~~~~~~~g-~~~g~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~r--~~i~~~~ 151 (441)
T 4a35_A 76 HVLNKDLKDIVGDFRGFYR-QLTSDGQLRWIG-PEKGVVHLATAAVLNAVWDLWAKQEGKPVWKLLVDMDP--RMLVSCI 151 (441)
T ss_dssp GTTTCBHHHHHTTHHHHHH-HHHSCTTGGGGC-SSSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHSCH--HHHHTTC
T ss_pred HhCCCCHHHHHHHHHHHHH-HHhhccceeecC-CCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCc--ccceecc
Confidence 9999999887654432111 1110 011 11234578999999999999999999999999999741 11110
Q ss_pred --------------------------------ccceeEEEEee--cCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChH
Q 041113 640 --------------------------------RSTSIKICALI--DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI 685 (983)
Q Consensus 640 --------------------------------~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~ 685 (983)
.+..+|+|.+. +...+++++.+++++++++||++||+|+|. +++
T Consensus 152 ~~~y~~d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~y~~~~g~~~~~~e~~~~~a~~~~~~Gf~~~KlKvG~--~~~ 229 (441)
T 4a35_A 152 DFRYITDVLTEEDALEILQKGQIGKKEREKQMLAQGYPAYTTSCAWLGYSDDTLKQLCAQALKDGWTRFKVKVGA--DLQ 229 (441)
T ss_dssp CCTTTTTTCCHHHHHHHHHHTTTTHHHHHHHHHHHCEEEEECTTCCTTCCHHHHHHHHHHHHHTTCCEEEEECSS--CHH
T ss_pred cccccccccchhhhhhhhhhcccccchhhhhhcccCcceEEeccccCCCCHHHHHHHHHHHHHCCCCEEEEcCCC--CHH
Confidence 01248899863 234589999999999999999999999997 799
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhh---cCCcEEeCCCcc
Q 041113 686 KDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEE---SGLPVALDETID 760 (983)
Q Consensus 686 ~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~---~~ipIa~dEs~~ 760 (983)
+|+++|++||+++|+++.|++|+|++|++++|+++++.|+++++.|||||++ |++++++|+++ +++||++||+++
T Consensus 230 ~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~L~~~~~~~iEeP~~~~d~~~~~~l~~~l~~~~iPIa~gE~~~ 309 (441)
T 4a35_A 230 DDMRRCQIIRDMIGPEKTLMMDANQRWDVPEAVEWMSKLAKFKPLWIEEPTSPDDILGHATISKALVPLGIGIATGEQCH 309 (441)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECCSCTTCHHHHHHHHHHHGGGTCEEEECTTCC
T ss_pred HHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHhhcccCccEEeCCCCcccHHHHHHHHHhccCCCCCEEeCCccc
Confidence 9999999999999999999999999999999999999999999999999998 78889999987 899999999999
Q ss_pred CcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHH-HHHh----hchhhh
Q 041113 761 KFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYI-IFSS----YLELQN 834 (983)
Q Consensus 761 ~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~-~laa----~~~~~~ 834 (983)
+..+ +..+++. ++|++|+|++++||++++++++++|+++|++++ +|. +++++++++ |++. +++..
T Consensus 310 ~~~~-----~~~~l~~~a~div~~d~~~~GGit~~~kia~lA~~~gv~v~-~H~--~~ig~aa~~~hl~~~~~~~l~~~- 380 (441)
T 4a35_A 310 NRVI-----FKQLLQAKALQFLQIDSCRLGSVNENLSVLLMAKKFEIPVC-PHA--GGVGLCELVQHLIIFDYISVSAS- 380 (441)
T ss_dssp SHHH-----HHHHHHTTCCSEECCCTTTSSHHHHHHHHHHHHHHTTCCBC-CCC--CTTTHHHHHHHHHHHHHHHTSCC-
T ss_pred cHHH-----HHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEE-EeC--ChHHHHHHHHHHhhhhhcccccC-
Confidence 9753 6666654 579999999999999999999999999999965 554 466665543 4432 11100
Q ss_pred hhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeEEecchhhhhhhccccc
Q 041113 835 AYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEASVAKATHILQNLQINN 897 (983)
Q Consensus 835 ~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~~ 897 (983)
. +.. .+....+ ..+++.+|+.+++ +|++|||||++| ++.++++....
T Consensus 381 ----------~-~~~--~~E~~~~-~~~~~~~p~~~~dG~i~vp~~PGLGveld--~~~l~~~~~~~ 431 (441)
T 4a35_A 381 ----------L-ENR--VCEYVDH-LHEHFKYPVMIQRASYMPPKDPGYSTEMK--EESVKKHQYPD 431 (441)
T ss_dssp ----------C-TTC--CEEECCS-SGGGBSSCCEESSSEEECCCSSBCSCCBC--HHHHHHHBTTT
T ss_pred ----------c-ccc--eeeccch-hhhcccCCceeeCCEEECCCCCcCCcccC--HHHHHhccCCC
Confidence 0 000 0111112 2355677888874 999999999999 88888888653
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-55 Score=498.82 Aligned_cols=352 Identities=22% Similarity=0.285 Sum_probs=293.8
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCc--C-cCcccHHHHHHHHHH-HHhHh
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL--E-IHKENLLDAEEQLRF-LLHFM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~--~-~~~~~~~~~~~~l~~-~~~~l 568 (983)
|||++|+++.+++||+.||.++.+.. ..++.++|+|+|++| +||||+.+. + +.++++..+...+.. +.|.|
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~----~~~~~~~v~v~td~G-~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l 75 (368)
T 1sjd_A 1 MKLSGVELRRVQMPLVAPFRTSFGTQ----SVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYNDGAEHVLRHYLIPAL 75 (368)
T ss_dssp CCCCEEEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEECSSC-EEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHH
T ss_pred CEEEEEEEEEEeccccCCeEeeeeEE----ecccEEEEEEEeCCC-EEEEEecCCCCCccccCcHHHHHHHHHHHHHHHH
Confidence 69999999999999999999888654 448899999999999 999999865 2 556776666666655 88999
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA 648 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~ 648 (983)
+|+++.+...++. .+.. ....++|++|||+||||++||..|+|||+||||.+ .+++.+.
T Consensus 76 ~g~d~~~~~~l~~---------~~~~--~~g~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~----------~~~~~~~ 134 (368)
T 1sjd_A 76 LAAEDITAAKVTP---------LLAK--FKGHRMAKGALEMAVLDAELRAHERSFAAELGSVR----------DSVPCGV 134 (368)
T ss_dssp HHSSSCCHHHHHH---------HHTT--SCSCHHHHHHHHHHHHHHHHHHTTCBHHHHHTCCC----------SEEEBEE
T ss_pred cCCCcCCHHHHHH---------HHHH--hcCCHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC----------CCccceE
Confidence 9998766433321 1110 01146799999999999999999999999999965 3466555
Q ss_pred eecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCC
Q 041113 649 LIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD 728 (983)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~ 728 (983)
+++...+++++.+.+++++++||+++|+|++ ++.|+++|++||+++|+++.|++|+|++|+.++ +++++.|++++
T Consensus 135 ~~g~~~~~~~~~~~a~~~~~~Gf~~vKik~~----~~~~~e~v~avr~~~g~~~~l~vDan~~~~~~~-~~~~~~l~~~~ 209 (368)
T 1sjd_A 135 SVGIMDTIPQLLDVVGGYLDEGYVRIKLKIE----PGWDVEPVRAVRERFGDDVLLQVDANTAYTLGD-APQLARLDPFG 209 (368)
T ss_dssp EECCCSCHHHHHHHHHHHHHHTCSEEEEECB----TTBSHHHHHHHHHHHCTTSEEEEECTTCCCGGG-HHHHHTTGGGC
T ss_pred EeeCCCCHHHHHHHHHHHHHhCccEEEEecC----chhHHHHHHHHHHhcCCCceEEEeccCCCCHHH-HHHHHHHHhcC
Confidence 5432258999999999999999999999995 467899999999999999999999999999999 99999999999
Q ss_pred CceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcC
Q 041113 729 LQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHG 805 (983)
Q Consensus 729 i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~g 805 (983)
+.|||||++ +++++++|++++++||++||++.+.. .+..+++. .+|++++|++++||++++++++++|+++|
T Consensus 210 i~~iE~P~~~~~~~~~~~l~~~~~ipIa~dE~~~~~~-----~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g 284 (368)
T 1sjd_A 210 LLLIEQPLEEEDVLGHAELARRIQTPICLDESIVSAR-----AAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHG 284 (368)
T ss_dssp CSEEECCSCTTCHHHHHHHHTTCSSCEEESTTCCSHH-----HHHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTT
T ss_pred CCeEeCCCChhhHHHHHHHHHhCCCCEEECCCcCCHH-----HHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcC
Confidence 999999998 78899999999999999999998865 36666654 47999999999999999999999999999
Q ss_pred CcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccc-hhcccccCCCCCceeec----cCCCCeee
Q 041113 806 KMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGT-YQWLKEDVTTDPISICH----NSCRGFVE 880 (983)
Q Consensus 806 i~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~d~~~~p~~~~~----~P~~pGlG 880 (983)
++++++|++||+|++++++|++ +++|+. .++.++. ..++.+|+ .+|+.+++ +|++||||
T Consensus 285 ~~~~~~~~~es~i~~aa~~hla-a~~~~~--------------~~~e~~~~~~~~~~d~-~~~~~~~~G~~~~p~~PGlG 348 (368)
T 1sjd_A 285 IPVWCGGMIETGLGRAANVALA-SLPNFT--------------LPGDTSASDRFYKTDI-TEPFVLSGGHLPVPTGPGLG 348 (368)
T ss_dssp CCEEECCCCCCHHHHHHHHHHH-TSTTBC--------------SCBSCCCGGGTCSSCS-SSCCCCSSSEEECCCSSBTS
T ss_pred CcEEeCCccccHHHHHHHHHHH-cCCCCC--------------cccccCCchhhhhhcC-CCCceEECCEEECCCCCcCC
Confidence 9999999999999999999999 888531 1122222 24567788 78888873 89999999
Q ss_pred EEecchhhhhhhcccccc
Q 041113 881 ASVAKATHILQNLQINND 898 (983)
Q Consensus 881 v~~d~a~~~~~~~~~~~~ 898 (983)
+++| ++.++++.+...
T Consensus 349 v~~d--~~~l~~~~~~~~ 364 (368)
T 1sjd_A 349 VAPI--PELLDEVTTAKV 364 (368)
T ss_dssp CCCC--HHHHHHHEEEEE
T ss_pred ceeC--HHHHHhheeeee
Confidence 9999 888888776543
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-55 Score=498.37 Aligned_cols=352 Identities=20% Similarity=0.219 Sum_probs=285.0
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCc--C-cCcccHHHHHHHHHH-HHhHh
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL--E-IHKENLLDAEEQLRF-LLHFM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~--~-~~~~~~~~~~~~l~~-~~~~l 568 (983)
|||++|+++.+++||+.||.++.+.. +.++.++|+|+| +|++||||+.+. + +.++++..+...+.. +.|.+
T Consensus 8 mkI~~i~~~~~~~pl~~p~~~~~~~~----~~~~~~~V~v~t-dG~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l 82 (375)
T 1r0m_A 8 FKIEAAEIVVARLPLKFRFETSFGVQ----THKVVPLLILHG-EGVQGVAEGTMEARPMYREETIAGALDLLRGTFLPAI 82 (375)
T ss_dssp EECCEEEEEEEEEEBC--------------CEEEEEEEEEEE-TTEEEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHH
T ss_pred cEEEEEEEEEEeeecCCCeEecceEE----eeccEEEEEEEE-CCeEEEEEEecCCCCcccCCCHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988764 348899999999 599999999865 2 456776666666654 88999
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA 648 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~ 648 (983)
+|+++.+...++. .+.. ....++|++|||+||||++||..|+|||+||||.+ .+++.+.
T Consensus 83 ~g~d~~~~~~l~~---------~~~~--~~g~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~----------~~~~~~~ 141 (375)
T 1r0m_A 83 LGQTFANPEAVSD---------ALGS--YRGNRMARAMVEMAAWDLWARTLGVPLGTLLGGHK----------EQVEVGV 141 (375)
T ss_dssp TTCEESSHHHHHH---------TTTT--SCSCHHHHHHHHHHHHHHHHHHHTCBHHHHHTCCC----------SEEEBCE
T ss_pred cCCCcCCHHHHHH---------HHHH--ccCchHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC----------CceeeeE
Confidence 9998766443332 1110 11146799999999999999999999999999965 3455554
Q ss_pred eecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCC
Q 041113 649 LIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD 728 (983)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~ 728 (983)
+++...+++++.+.+++++++||++||+|++ ++.|++++++||+++ +++.|++|+|++|+.++ +++++.|++++
T Consensus 142 ~~g~~~~~~~~~~~a~~~~~~G~~~iKik~~----~~~d~~~v~avr~a~-~~~~l~vDan~~~~~~~-~~~~~~l~~~~ 215 (375)
T 1r0m_A 142 SLGIQADEQATVDLVRRHVEQGYRRIKLKIK----PGWDVQPVRATREAF-PDIRLTVDANSAYTLAD-AGRLRQLDEYD 215 (375)
T ss_dssp EECCCSSHHHHHHHHHHHHHTTCSCEEEECB----TTBSHHHHHHHHHHC-TTSCEEEECTTCCCGGG-HHHHHTTGGGC
T ss_pred EecCCCCHHHHHHHHHHHHHhcccEEEEecC----hHHHHHHHHHHHHHc-CCCeEEEeCCCCCCHHH-HHHHHHHHhCC
Confidence 4432258999999999999999999999995 467899999999999 99999999999999999 99999999999
Q ss_pred CceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcC
Q 041113 729 LQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHG 805 (983)
Q Consensus 729 i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~g 805 (983)
+.|||||++ +++++++|++++++||++||++++.. .+..+++. .+|++++|++++||++++++++++|+++|
T Consensus 216 i~~iEqP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~-----~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g 290 (375)
T 1r0m_A 216 LTYIEQPLAWDDLVDHAELARRIRTPLCLDESVASAS-----DARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFG 290 (375)
T ss_dssp CSCEECCSCTTCSHHHHHHHHHCSSCEEESTTCCSHH-----HHHHHHHHTSCSEEEECTTTTTSHHHHHHHHHHHHHTT
T ss_pred CcEEECCCCcccHHHHHHHHHhCCCCEEecCccCCHH-----HHHHHHHhCCCCEEEECcchhcCHHHHHHHHHHHHHcC
Confidence 999999998 78899999999999999999998865 36665554 47999999999999999999999999999
Q ss_pred CcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccc-hhcccccCCCCCceeec----cCCCCeee
Q 041113 806 KMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGT-YQWLKEDVTTDPISICH----NSCRGFVE 880 (983)
Q Consensus 806 i~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~d~~~~p~~~~~----~P~~pGlG 880 (983)
+++|++|++||+|++++++|++ +++|.. .++.++. ..++.+|++.+|+.+++ +|++||||
T Consensus 291 ~~~~~~~~~es~i~~aa~~hla-a~~~~~--------------~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlG 355 (375)
T 1r0m_A 291 APVWCGGMLESGIGRAHNIHLS-TLSNFR--------------LPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTG 355 (375)
T ss_dssp CCEEECCCCCCHHHHHHHHHHT-TSTTBC--------------SCBSCCCGGGTBSSCSBSSCCCCBTTEEECCCSSBTS
T ss_pred CcEEecCccccHHHHHHHHHHH-cCCCCC--------------cccccCCchhhhhhhcccCCceEECCEEECCCCCcCC
Confidence 9999999999999999999999 888531 1122222 24567888888888874 89999999
Q ss_pred EEecchhhhhhhcccccc
Q 041113 881 ASVAKATHILQNLQINND 898 (983)
Q Consensus 881 v~~d~a~~~~~~~~~~~~ 898 (983)
+++| ++.++++.+...
T Consensus 356 v~~d--~~~l~~~~~~~~ 371 (375)
T 1r0m_A 356 VTLD--REFLATVTEAQE 371 (375)
T ss_dssp CCBC--HHHHHHTEEEEE
T ss_pred CccC--HHHHhhheeeeE
Confidence 9999 888888776543
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-55 Score=498.61 Aligned_cols=348 Identities=15% Similarity=0.202 Sum_probs=273.4
Q ss_pred ccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHH-HHHhHh
Q 041113 490 LSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLR-FLLHFM 568 (983)
Q Consensus 490 ~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~-~~~~~l 568 (983)
|+.|||++|+++.++ + .++.++|||+||+|++||||+.. ..+ .+...+. .+.|.|
T Consensus 1 m~~mkIt~v~~~~~~-----~-------------~~~~~~V~v~td~G~~G~GE~~~---~~~---~~~~~i~~~l~p~l 56 (410)
T 3dip_A 1 MSLPRITALRTIRLP-----E-------------RPKLIWVEVETEDGLTGLGETFR---GAQ---AVEAVLHEQTAPAI 56 (410)
T ss_dssp --CCBEEEEEEEEET-----T-------------EEEEEEEEEEETTSCEEEEEEES---CHH---HHHHHHHHTHHHHH
T ss_pred CCCCeEEEEEEEEEC-----C-------------CCCEEEEEEEECCCCEEEEeCCC---ChH---HHHHHHHHHHHHHh
Confidence 677999999987653 0 16789999999999999999432 122 2334444 489999
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA 648 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~ 648 (983)
+|+++.+++.++..++.. ..+....+...+|++|||||||||+||.+|+|||+||||.. +++|++|+
T Consensus 57 iG~dp~~~e~~~~~~~~~----~~~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~---------r~~v~~ya 123 (410)
T 3dip_A 57 IGRAAENITSISSELLNP----YVGFGSSSAEVRAASAVDIALWDLAGQRAGVPLHVALGGAA---------RDRVPVYA 123 (410)
T ss_dssp TTSBTTCHHHHHHHHTCC----SSSCSSCCHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCS---------CSEEEEEE
T ss_pred cCCCcchHHHHHHHHHHH----HHhhCCccHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCCCc---------CCceeEEE
Confidence 999999876665432210 01222335677999999999999999999999999999986 58899997
Q ss_pred eecCC----------------------CCHHH----HHHHHHHhhhcCCCEEEE--------eccCCC---ChHHHHHHH
Q 041113 649 LIDSN----------------------KSPVE----VASIATTLVEEGFTAIKL--------KVARRA---DPIKDAEVI 691 (983)
Q Consensus 649 ~~~~~----------------------~~~~~----~~~~~~~~~~~G~~~~Ki--------Kig~~~---~~~~d~~~v 691 (983)
++... .++++ ..+.+++++++||++||+ |+|... +++.|+++|
T Consensus 124 s~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~~~~~~~~~K~G~~~~~~~~~~d~e~v 203 (410)
T 3dip_A 124 TCAGYDFNTSLGGRRSIGSAELSTGPYDDQVAFMRDAGVLAESLVAEGYAAMKIWPFDDFASITPHHISLTDLKDGLEPF 203 (410)
T ss_dssp EECTTTC----------------------------CHHHHHHHHHHTTCSEEEECTTHHHHTTCTTCCCHHHHHHHHHHH
T ss_pred ecccccccccccccccccccccccccccchhhhhhhHHHHHHHHHHcCCCEEEECCccCccccccCcCCHHHHHHHHHHH
Confidence 65321 12222 245667888999999999 988521 356899999
Q ss_pred HHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecC-CC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHH
Q 041113 692 QEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEP-VQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLN 768 (983)
Q Consensus 692 ~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP-~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~ 768 (983)
++||+++|+++.|++|+|++||+++|+++++.|+++++.||||| ++ +.+++++|++++++||++||++.+..+
T Consensus 204 ~avR~a~g~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEqP~~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~---- 279 (410)
T 3dip_A 204 RKIRAAVGQRIEIMCELHSLWGTHAAARICNALADYGVLWVEDPIAKMDNIPAVADLRRQTRAPICGGENLAGTRR---- 279 (410)
T ss_dssp HHHHHHHTTSSEEEEECTTCBCHHHHHHHHHHGGGGTCSEEECCBSCTTCHHHHHHHHHHHCCCEEECTTCCSHHH----
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHHhcCCCEEECCCCCcccHHHHHHHHhhCCCCEEecCCcCCHHH----
Confidence 99999999999999999999999999999999999999999999 78 788999999999999999999998753
Q ss_pred HHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCC
Q 041113 769 MLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCP 847 (983)
Q Consensus 769 ~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~ 847 (983)
+..+++. .+|++|+|++++||++++++++++|+++|++++++++ ++|++++++||++++||+. . .++ . .
T Consensus 280 -~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~--s~i~~aa~~hlaaa~pn~~--~---~e~-~-~ 349 (410)
T 3dip_A 280 -FHEMLCADAIDFVMLDLTWCGGLSEGRKIAALAETHARPLAPHXT--GPVALMAGLHLALHAPTAI--F---QEV-V-R 349 (410)
T ss_dssp -HHHHHHTTCCSEEEECTTTSSCHHHHHHHHHHHHHTTCCEEECSS--CHHHHHHHHHHHHHCTTBC--C---EEE-E-C
T ss_pred -HHHHHHcCCCCeEeecccccCCHHHHHHHHHHHHHcCCEEeeeCc--cHHHHHHHHHHHHhCCCCe--E---EEe-c-c
Confidence 6666654 4799999999999999999999999999999887776 9999999999999999641 1 110 0 0
Q ss_pred CCccCccchhcccccCCCCCceeec----cCCCCeeeEEecchhhhhhhcccc
Q 041113 848 PVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEASVAKATHILQNLQIN 896 (983)
Q Consensus 848 ~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~ 896 (983)
.+...+.+|++.+|+.+++ +|++|||||++| ++.++++++.
T Consensus 350 ------~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d--~~~l~~~~~~ 394 (410)
T 3dip_A 350 ------ASLATWYADLVDHLPVIQEGIALAPTRPGLGTALL--PHVRKIAGAV 394 (410)
T ss_dssp ------TTSCCTHHHHBSCCCCEETTEEECCCSSBTSCCBC--TTGGGSTTCE
T ss_pred ------ccCchhHHhhcCCCCcccCCEEECCCCCCCCcccC--HHHHhccCce
Confidence 0122334567777888874 999999999999 7777776543
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-55 Score=499.39 Aligned_cols=361 Identities=13% Similarity=0.089 Sum_probs=285.8
Q ss_pred ccceeEeEEEEEEEEeeCCC----------------CCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCccc
Q 041113 490 LSICKICRMEYSLYRIQLCA----------------PPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553 (983)
Q Consensus 490 ~~~mkI~~v~~~~~~~pl~~----------------p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~ 553 (983)
.+.|||++|+.+.+..+-.. .+..+.+++ ..++.++|||+||+|++||||+.+.+.
T Consensus 20 ~~~m~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~----~~~~~~lV~v~td~G~~G~GE~~~~~~---- 91 (412)
T 3stp_A 20 FQSMKIKSVRTRVWTWKGPTVPPQGNFCTNASDALWMKGDAMSSF----RFHQWLTCEVETEDGTIGIGNAALAPS---- 91 (412)
T ss_dssp ---CCEEEEEEEEEEECSCCCCCCSSSCCCGGGGSCCCSCTTTTT----CCCEEEEEEEEETTSCEEEEEECSSHH----
T ss_pred eeccEEEEEEEEEEeccCCCCCCCCCCCCCchhccCCCCCcceEE----EeccEEEEEEEECCCCEEEEeccCCHH----
Confidence 34579999999998763211 112233332 237889999999999999999965431
Q ss_pred HHHHHHHHHH-HHhHhccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCc
Q 041113 554 LLDAEEQLRF-LLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTE 632 (983)
Q Consensus 554 ~~~~~~~l~~-~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~ 632 (983)
.+...++. +.|.|+|+++.+++.++..++....+ .+ ..+...+|++|||||||||+||.+|+|||+||||..
T Consensus 92 --~~~~~i~~~l~p~LiG~dp~~~e~l~~~~~~~~~~--~g--~~g~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~- 164 (412)
T 3stp_A 92 --VVKKVIDDWYAPLVIGEDPFDYAYIWEKMYRRSHA--WG--RKGIGMTAISAIDIAIWDLMGKLVGKPVFKLLGGRT- 164 (412)
T ss_dssp --HHHHHHHHTTHHHHTTSCGGGHHHHHHHHHHHTHH--HH--SSTHHHHHHHHHHHHHHHHHHHHTTCBHHHHHTCCS-
T ss_pred --HHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHhhh--cC--CcchHHHHHHHHHHHHHHHHhhhcCCCHHHhcCCCC-
Confidence 23445555 88999999999877766543221111 11 124578999999999999999999999999999985
Q ss_pred cccccccccceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC-----CChHHHHHHHHHHHHHcCCCcEEEEE
Q 041113 633 IDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR-----ADPIKDAEVIQEVRKKVGHRIELRVD 707 (983)
Q Consensus 633 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~-----~~~~~d~~~v~~vr~~~g~~~~l~vD 707 (983)
+++||+|++.....+++++++++++++++||++||+|+|.+ .+++.|+++|++||+++|+++.|++|
T Consensus 165 --------r~~v~~y~s~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~dg~~~~~~die~v~avReavG~d~~L~vD 236 (412)
T 3stp_A 165 --------KDRIPVYYSKLYAGSIEAMQKEAEEAMKGGYKAFKSRFGYGPKDGMPGMRENLKRVEAVREVIGYDNDLMLE 236 (412)
T ss_dssp --------SSSEEEEEECCCSCCHHHHHHHHHHHHTTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred --------CceEEEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecccCcccccchHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 57899999854557899999999999999999999999852 12478999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEc
Q 041113 708 ANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIK 784 (983)
Q Consensus 708 aN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k 784 (983)
+|++|++++|+++++.|+++++.|||||++ +++++++|++++++||++||++.+..+ +..+++. .+|++|+|
T Consensus 237 aN~~~~~~~Ai~~~~~Le~~~i~~iEeP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~li~~~a~D~v~ik 311 (412)
T 3stp_A 237 CYMGWNLDYAKRMLPKLAPYEPRWLEEPVIADDVAGYAELNAMNIVPISGGEHEFSVIG-----CAELINRKAVSVLQYD 311 (412)
T ss_dssp CTTCSCHHHHHHHHHHHGGGCCSEEECCSCTTCHHHHHHHHHTCSSCEEECTTCCSHHH-----HHHHHHTTCCSEECCC
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHhCCCCCEEeCCCCCCHHH-----HHHHHHcCCCCEEecC
Confidence 999999999999999999999999999998 788999999999999999999998753 6666654 47999999
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCC
Q 041113 785 PSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVT 864 (983)
Q Consensus 785 ~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~ 864 (983)
++++||++++++++++|+++|+++++|+ +.++++|++++.+|.. . .++ .+. .++++...+.+|++
T Consensus 312 ~~~~GGit~a~kia~~A~a~gi~v~~h~------~~aa~~hlaaA~~~~~--~---~e~--~~~--~d~~~~~~l~~~~~ 376 (412)
T 3stp_A 312 TNRVGGITAAQKINAIAEAAQIPVIPHA------GQMHNYHLTMANTNCP--I---SEY--FPV--FDVEVGNELFYYIF 376 (412)
T ss_dssp HHHHTHHHHHHHHHHHHHHHTCCBCCSS------CSHHHHHHHHTCTTCC--C---EEE--CCC--CSSSSSTTTHHHHE
T ss_pred hhhcCCHHHHHHHHHHHHHcCCEEEecc------HHHHHHHHHHhCCCCc--e---EEe--ccc--ccccccchhhhhhc
Confidence 9999999999999999999999988766 5789999998877531 1 111 110 12233344556677
Q ss_pred CCCceeec----cCCC-CeeeEEecchhhhhhhccc
Q 041113 865 TDPISICH----NSCR-GFVEASVAKATHILQNLQI 895 (983)
Q Consensus 865 ~~p~~~~~----~P~~-pGlGv~~d~a~~~~~~~~~ 895 (983)
.+|+.+++ +|++ |||||++| ++.++++++
T Consensus 377 ~~~~~~~~G~i~vp~~~PGlGveld--~~~l~~~~~ 410 (412)
T 3stp_A 377 EGDPEAVDGYLQLDDDLPGLGIAIS--DKHLQHFDI 410 (412)
T ss_dssp ECCCCCBTTEECCCSSSCBTSCEEC--CTTGGGEEE
T ss_pred cCCCcccCCEEEcCCCCCcccccCC--HHHHHhccc
Confidence 77777773 9999 99999999 788888765
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-55 Score=498.60 Aligned_cols=353 Identities=20% Similarity=0.240 Sum_probs=293.2
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCc--C-cCcccHHHHHHHHHH-HHhHh
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL--E-IHKENLLDAEEQLRF-LLHFM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~--~-~~~~~~~~~~~~l~~-~~~~l 568 (983)
|||++|+++.+++|++.||.++.+.. +.++.++|+|+| +|.+||||+.+. + +.++++.++...+.. +.|.+
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~----~~~~~~~V~v~t-dG~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l 75 (369)
T 2zc8_A 1 MRIEAAELRILELPLKFRFETSFGVQ----TKRTILLLRLFG-EGLEGLGEGVMERLPLYREETVAGARYLLEEVFLPRV 75 (369)
T ss_dssp CBCCEEEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEEE-TTEEEEEECCCBSSCSSSSCBHHHHHHHHHHTHHHHH
T ss_pred CEEEEEEEEEEeccccCCEEEeeEEE----eeCcEEEEEEEE-CCeEEEEEeccCCCCcccCCCHHHHHHHHHHHHHHHH
Confidence 69999999999999999999888754 458899999999 599999999865 2 456776666666655 89999
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA 648 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~ 648 (983)
+|+++.+...++. .+.. ....++|++|||+||||++||..|+|||+||||.+ .+++.+.
T Consensus 76 ~G~d~~~~~~l~~---------~~~~--~~g~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~----------~~~~~~~ 134 (369)
T 2zc8_A 76 LGRDLPNPEALRE---------ALAP--FRGNPMAKAVLEMAFFDLWAKALGRPLWQVLGGVR----------QAVEVGV 134 (369)
T ss_dssp TTCBCSSHHHHHH---------HHTT--SCSCHHHHHHHHHHHHHHHHHHTTSBHHHHHTCCC----------SEEEBCE
T ss_pred cCCCcCCHHHHHH---------HHHH--hcCChHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC----------CceeceE
Confidence 9998766433322 1110 01146799999999999999999999999999965 3455554
Q ss_pred eecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCC
Q 041113 649 LIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD 728 (983)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~ 728 (983)
+++...+++++.+.+++++++||++||+|++ +++|++++++||+++ +++.|++|+|++|+.++ +++++.|++++
T Consensus 135 ~~g~~~~~~~~~~~a~~~~~~G~~~iKik~~----~~~d~~~v~avr~a~-~~~~l~vDan~~~~~~~-~~~~~~l~~~~ 208 (369)
T 2zc8_A 135 SLGIQPSVEDTLRVVERHLEEGYRRIKLKIK----PGWDYEVLKAVREAF-PEATLTADANSAYSLAN-LAQLKRLDELR 208 (369)
T ss_dssp EECCCSSHHHHHHHHHHHHHTTCSCEEEECB----TTBSHHHHHHHHHHC-TTSCEEEECTTCCCGGG-HHHHHGGGGGC
T ss_pred EecCCCCHHHHHHHHHHHHHhhhheeeeecC----hhHHHHHHHHHHHHc-CCCeEEEecCCCCCHHH-HHHHHHHHhCC
Confidence 4432258999999999999999999999995 467899999999999 99999999999999999 99999999999
Q ss_pred CceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcC
Q 041113 729 LQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHG 805 (983)
Q Consensus 729 i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~g 805 (983)
+.|||||++ +++++++|++++++||++||++++.. .+..+++. .+|++++|++++||++++++++++|+++|
T Consensus 209 i~~iEqP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~-----~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g 283 (369)
T 2zc8_A 209 LDYIEQPLAYDDLLDHAKLQRELSTPICLDESLTGAE-----KARKAIELGAGRVFNVKPARLGGHGESLRVHALAESAG 283 (369)
T ss_dssp CSCEECCSCTTCSHHHHHHHHHCSSCEEESTTCCSHH-----HHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTT
T ss_pred CcEEECCCCcccHHHHHHHHhhCCCCEEEcCccCCHH-----HHHHHHHhCCCCEEEEchhhhCCHHHHHHHHHHHHHcC
Confidence 999999998 78899999999999999999998875 36666654 47999999999999999999999999999
Q ss_pred CcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccc-hhcccccCCCCCceeec----cCCCCeee
Q 041113 806 KMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGT-YQWLKEDVTTDPISICH----NSCRGFVE 880 (983)
Q Consensus 806 i~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~d~~~~p~~~~~----~P~~pGlG 880 (983)
+++|++|+++++|++++++|++ +++|+. .++.++. ..++.+|++.+|+.+++ +|++||||
T Consensus 284 ~~~~~~~~~es~i~~aa~~hla-a~~~~~--------------~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlG 348 (369)
T 2zc8_A 284 IPLWMGGMLEAGVGRAHNLHLA-TLPGFT--------------KPGDVSSASRYWEEDIVEEALEAKDGLMPVPEGVGIG 348 (369)
T ss_dssp CCEEECCCCCCHHHHHHHHHHT-TSTTBC--------------SCBSCCCGGGTBSSCSBSSCCCCBTTEEECCCSSBTC
T ss_pred CcEEecCccccHHHHHHHHHHH-cCCCCC--------------cccccCCcchhhhhccccCCcEEECCEEECCCCCcCC
Confidence 9999999999999999999999 887531 1112222 24567888888888874 89999999
Q ss_pred EEecchhhhhhhccccccc
Q 041113 881 ASVAKATHILQNLQINNDV 899 (983)
Q Consensus 881 v~~d~a~~~~~~~~~~~~~ 899 (983)
+++| ++.++++.+....
T Consensus 349 v~~d--~~~l~~~~~~~~~ 365 (369)
T 2zc8_A 349 VHLK--LPFVERVTLWQRY 365 (369)
T ss_dssp CCBC--HHHHHHTEEEEEE
T ss_pred cccC--HHHHhhceEEEEE
Confidence 9999 8888887765433
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-54 Score=496.58 Aligned_cols=347 Identities=16% Similarity=0.151 Sum_probs=275.9
Q ss_pred cceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHH-HHHhHhc
Q 041113 491 SICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLR-FLLHFMT 569 (983)
Q Consensus 491 ~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~-~~~~~l~ 569 (983)
++|||++|+++.+. | .++.++|||+||+|++||||+.+.+ ++. .+...++ .+.|.|+
T Consensus 21 ~~mkIt~v~~~~~~-----~-------------~~~~v~V~v~td~Gi~G~GE~~~~g---~~~-~~~~~l~~~l~p~Li 78 (426)
T 4e4f_A 21 QSMKIVSAEVFVTC-----P-------------GRNFVTLKITTDSGLTGLGDATLNG---REL-PVASYLNDHVCPQLI 78 (426)
T ss_dssp -CCBEEEEEEEEEC-----S-------------SSCEEEEEEEETTSCEEEEECCCTT---CHH-HHHHHHHHTHHHHHT
T ss_pred cCcEEEEEEEEEEc-----C-------------CCCEEEEEEEECCCCEEEEecccCC---CcH-HHHHHHHHHHHHHHc
Confidence 45899999987542 1 1568999999999999999987543 211 2334454 4789999
Q ss_pred cCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEe
Q 041113 570 GAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICAL 649 (983)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~ 649 (983)
|+++.+++.++..++ ............+|++|||+|||||+||.+|+|||+||||.. +++|++|++
T Consensus 79 G~dp~~ie~i~~~l~-----~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~---------r~~v~~y~~ 144 (426)
T 4e4f_A 79 GRDAHQIEDIWQYFY-----KGAYWRRGPVTMSAISAVDMALWDIKAKAANMPLYQLLGGAS---------RTGVMVYCH 144 (426)
T ss_dssp TSBTTCHHHHHHHHH-----HHTSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTCCS---------SSSEEEEEE
T ss_pred CCChhhHHHHHHHHH-----hhccccCCccchhhHHHHHHHHHHHhHhHcCCcHHHHcCCCC---------CCceeEeEe
Confidence 999998777664322 111111223467899999999999999999999999999986 578999998
Q ss_pred ecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCC---------------------------------hHHHHHHHHHHHH
Q 041113 650 IDSNKSPVEVASIATTLVEEGFTAIKLKVARRAD---------------------------------PIKDAEVIQEVRK 696 (983)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~---------------------------------~~~d~~~v~~vr~ 696 (983)
.. ..+++++.+++++++++||++||+|+|.+.. .+.+++++++||+
T Consensus 145 ~~-~~~~~~~~~~~~~~~~~Gf~~iKikvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~avR~ 223 (426)
T 4e4f_A 145 TT-GHSIDEVLDDYAKHRDQGFKAIRVQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWSTEKYLDFTPKLFEAVRD 223 (426)
T ss_dssp EC-CSSHHHHHHHHHHHHHTTCSEEEECC-------------------CCSEESSSCCEEEECHHHHHHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHcCCCEEEEeccCCccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 63 4688999999999999999999999985210 1225789999999
Q ss_pred HcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhc
Q 041113 697 KVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA 774 (983)
Q Consensus 697 ~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~ 774 (983)
++|+++.|++|+|++||+++|+++++.|+++++.|||||++ +++.+++|++++++||++||++++..+ +..++
T Consensus 224 a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iEeP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~i 298 (426)
T 4e4f_A 224 KFGFNEHLLHDMHHRLTPIEAARFGKSVEDYRLFWMEDPTPAENQACFRLIRQHTVTPIAVGEVFNSIWD-----CKQLI 298 (426)
T ss_dssp HHTTSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEECCSCCSSGGGGHHHHTTCCSCEEECTTCCSGGG-----THHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEEECCCChHHHHHHHHHHhcCCCCEEeCCCcCCHHH-----HHHHH
Confidence 99999999999999999999999999999999999999998 788999999999999999999999875 45555
Q ss_pred CC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCC-CCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccC
Q 041113 775 HP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSA-AFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQG 852 (983)
Q Consensus 775 ~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~-~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g 852 (983)
+. .+|++|+|++++||++++++++++|+++|++++.++ +.+|+|++++++|+++++||+. . .++. +
T Consensus 299 ~~ga~d~v~~k~~~~GGit~~~~ia~~A~~~gi~v~~h~~~~~s~i~~aa~~hlaaa~pn~~--~---~e~~-------~ 366 (426)
T 4e4f_A 299 EEQLIDYIRTTITHAGGITGMRRIADFASLYQVRTGSHGPSDLSPICMAAALHFDLWVPNFG--V---QEYM-------G 366 (426)
T ss_dssp HTTCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEEEECCCTTSCHHHHHHHHHHHHHCTTEE--E---EECC-------C
T ss_pred HcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEeeeCCCCccHHHHHHHHHHHHhCCCce--e---Eeec-------C
Confidence 44 579999999999999999999999999999987655 4589999999999999999742 1 1111 0
Q ss_pred ccchhcccccCCCCCceeec----cCCCCeeeEEecchhhhhhhcccc
Q 041113 853 LGTYQWLKEDVTTDPISICH----NSCRGFVEASVAKATHILQNLQIN 896 (983)
Q Consensus 853 ~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~ 896 (983)
. . .++. +++.+++.+++ +|++|||||++| ++.++++...
T Consensus 367 ~-~-~~~~-~~~~~~~~~~~G~i~~p~~PGLGve~d--e~~~~~~~~~ 409 (426)
T 4e4f_A 367 Y-S-EQML-EVFPHSWTFDNGYMHPGEKPGLGIEFD--EKLAAKYPYD 409 (426)
T ss_dssp C-C-HHHH-HHSCCCCEEETTEEECCSSSBTCCCCC--HHHHTTSCCC
T ss_pred c-c-hhhH-hhcCCCceeeCCEEECCCCCCCCcccC--HHHHHhccCc
Confidence 1 1 1111 34456787774 999999999999 8888888754
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-55 Score=495.46 Aligned_cols=350 Identities=15% Similarity=0.120 Sum_probs=284.7
Q ss_pred ccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHH-HHHHhHh
Q 041113 490 LSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQL-RFLLHFM 568 (983)
Q Consensus 490 ~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l-~~~~~~l 568 (983)
|++|||++|+++.+++|++.||.++.+.+ ..++.++|+|+|+ |++||||+.+. ++ +...+ +.++|.|
T Consensus 3 ~~~mkI~~i~~~~~~~pl~~p~~~~~~~~----~~~~~v~V~v~td-G~~G~Ge~~~~----~~---~~~~i~~~l~~~l 70 (372)
T 3cyj_A 3 LSGPRVERLEVSAYTVPTDYPESDGTLQW----DSTTMILVEAHGG-GRKGLGYTYGD----VS---VGRFVESKLAGVA 70 (372)
T ss_dssp ---CBEEEEEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEEET-TEEEEEEEESC----TH---HHHHHHHHTHHHH
T ss_pred CCCCEEeEEEEEEEeccCCCcccCccccc----ccccEEEEEEEeC-CcEEEEeccCc----HH---HHHHHHHHHHHHH
Confidence 45689999999999999999998887653 3488999999999 99999999752 22 23334 3588999
Q ss_pred ccCcccccccccccCchhhhhhhc-CCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTL-GIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKIC 647 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~ 647 (983)
+|+++.+...++..+ ...+ +....+..++|++|||+||||+.||..|+|||+||||.+ ++||+|
T Consensus 71 ~g~d~~~~~~i~~~l-----~~~~~~~~~~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~----------~~vp~~ 135 (372)
T 3cyj_A 71 EGSDALSPPAVWARM-----QAAIRNAGRPGVGAMAVSAVDIALWDLKARLLGLPLADALPRFH----------AEVPVY 135 (372)
T ss_dssp TTSBTTCHHHHHHHH-----HHHTTTTCSSBHHHHHHHHHHHHHHHHHHHHTTCBHHHHSCCCC----------SSEEEE
T ss_pred cCCCcccHHHHHHHH-----HHHHHhcCCchHHHHHHHHHHHHHHHHhhhHcCCcHHHHhCCCC----------CCceEE
Confidence 999987765544321 1111 111234467899999999999999999999999999974 579999
Q ss_pred EeecCC-CCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhccc
Q 041113 648 ALIDSN-KSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD 726 (983)
Q Consensus 648 ~~~~~~-~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~ 726 (983)
++++.. .+++++.+++++++++||++||+|+|. ++++|+++|++||+++|+++.|++|+|++|++++|+++++.|++
T Consensus 136 ~~~g~~~~~~~~~~~~a~~~~~~G~~~~KiKvG~--~~~~d~~~v~avr~a~g~~~~l~vDaN~~~~~~~a~~~~~~l~~ 213 (372)
T 3cyj_A 136 GSGGFTSYPLRRLQEQLGGWAAAGIPRVKMKVGR--EPEKDPERVRAAREAIGESVELMVDANGAYTRKQALYWAGAFAR 213 (372)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHTTCCEEEEECCS--SGGGHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHHH
T ss_pred EEcCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC--CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 886322 356889999999999999999999996 78999999999999999999999999999999999999999999
Q ss_pred C-CCceeecCCC--ChHHHHHHHhhcC--CcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHH
Q 041113 727 C-DLQYIEEPVQ--NEEDIIKYCEESG--LPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWA 801 (983)
Q Consensus 727 ~-~i~~iEeP~~--~~~~~~~l~~~~~--ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A 801 (983)
| ++.|||||++ |++++++|+++++ +||++||++++..+ +..+ ...+|++|+|++++||++++++++++|
T Consensus 214 ~~~i~~iEqP~~~~d~~~~~~l~~~~~~~ipIa~dE~~~~~~~-----~~~~-~~a~d~i~ik~~~~GGit~~~~i~~~A 287 (372)
T 3cyj_A 214 EAGISYLEEPVSSEDREGLRLLRDRGPGGVAIAAGEYEWTLPQ-----LHDL-AGCVDILQADVTRCGGITGLLRVDGIC 287 (372)
T ss_dssp HHCCCEEECSSCTTCHHHHHHHHHHSCTTCEEEECTTCCSHHH-----HHHH-HTTCSEEEECTTTTTHHHHHTTHHHHH
T ss_pred hcCCcEEECCCCcccHHHHHHHHHhCCCCCCEECCCCccCHHH-----HHHH-hCCCCEEecCchhhCCHHHHHHHHHHH
Confidence 9 9999999998 8899999999988 79999999998753 5666 566899999999999999999999999
Q ss_pred HHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cC-CC
Q 041113 802 QRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NS-CR 876 (983)
Q Consensus 802 ~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P-~~ 876 (983)
+++|+++++|++ .++++|++++++|+. . . ++ +.....+..|++.+|+.+++ +| ++
T Consensus 288 ~~~gi~~~~~~~------~~a~lhlaaa~~~~~--~---~--e~-------~~~~~~~~~~~~~~~~~~~~G~~~~p~~~ 347 (372)
T 3cyj_A 288 RGHQIPFSAHCA------PAVSAHACCAVESLL--H---L--EY-------FHDHARVERLLFDGTLDPEGGSLRPDPDR 347 (372)
T ss_dssp HHHTCCEEECSC------HHHHHHHGGGCTTEE--E---E--EE-------EHHHHHHHHHHEECCCCCGGGEECCCTTS
T ss_pred HHcCCeecccch------HHHHHHHHHhCCCCc--e---e--ec-------cCCchhhhhHhhcCCCcccCcEEEcCCCC
Confidence 999999998886 457999999998631 1 0 00 11122345677677887773 89 99
Q ss_pred CeeeEEecchhhhhhhcccc
Q 041113 877 GFVEASVAKATHILQNLQIN 896 (983)
Q Consensus 877 pGlGv~~d~a~~~~~~~~~~ 896 (983)
||||+++| ++.++++...
T Consensus 348 PGlGv~~d--~~~l~~~~~~ 365 (372)
T 3cyj_A 348 PGLGLELK--RSEAGKYAAE 365 (372)
T ss_dssp CBTCCEEC--HHHHHHHBC-
T ss_pred CcccceEC--HHHHHHHHhh
Confidence 99999999 8888777644
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 4hn8_A 3nxl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-54 Score=498.91 Aligned_cols=357 Identities=15% Similarity=0.160 Sum_probs=284.9
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccC
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGA 571 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~ 571 (983)
+|||++|+++.+..| ..+..++.+.+. ...+.++|+|+||+|++||||+.+ .+. +...++.++|.|+|+
T Consensus 7 ~~~It~i~~~~v~~~-d~~~~~~~g~h~---p~~~~~~V~i~td~Gi~G~GE~~~----~~~---v~~~i~~l~p~LiG~ 75 (470)
T 3p0w_A 7 TPRVTEMQVIPVAGR-DSMLLNLCGAHA---PFFTRNLVILKDNAGRTGVGEVPG----GEG---IRQALERVIPLVVGQ 75 (470)
T ss_dssp CCBEEEEEEEEEEEE-CCCBEETTEECC---SEEEEEEEEEEETTSCEEEEEEEC----CHH---HHHHHHHTGGGTTTC
T ss_pred CCeEEEEEEEEecCC-CcccccccccCC---CcceEEEEEEEECCCCEEEEeCCC----hHH---HHHHHHHHHHHhCCC
Confidence 479999999999988 556655655432 236789999999999999999853 222 344567789999999
Q ss_pred cccccccccccCchhhhhhh-cC----------C-CCC---cc------hhhHHHHHHHHHHHHHHHHcCCChhhhcC-C
Q 041113 572 KISYFLPLLKGSFSSWIWST-LG----------I-PAC---EI------FPSVRCGLEMAILNAIAVKHGSSFLNILY-P 629 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~-~~----------~-~~~---~~------~~~a~~aid~AlwDl~gk~~g~pv~~lLG-g 629 (983)
++.+++.++..++....+.. -| . .+. +. ..+|++|||+|||||+||.+|+|||+||| |
T Consensus 76 d~~~ie~i~~~~~~~~~~~~~~G~~~~~~~~~r~~~p~~~~g~~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGgG 155 (470)
T 3p0w_A 76 SIGRTNGVLSSIRRALAGGGNAAHQATVHQVTSASEAAVLRQPHEINLRMDNVITAVEAALLDLLGQFLEVPVAELLGAG 155 (470)
T ss_dssp BGGGHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHHHHHHHHHHTSBGGGTSTTS
T ss_pred ChhhHHHHHHHHHHHHhhcCCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCC
Confidence 99988777654332111100 00 0 000 00 24899999999999999999999999999 6
Q ss_pred CCccccccccccceeEEEEeec----------------------------CCCCHHHHHHHHHHhhh-cCCCEEEEeccC
Q 041113 630 LTEIDEEISKRSTSIKICALID----------------------------SNKSPVEVASIATTLVE-EGFTAIKLKVAR 680 (983)
Q Consensus 630 ~~~~~~~~~~~~~~i~~~~~~~----------------------------~~~~~~~~~~~~~~~~~-~G~~~~KiKig~ 680 (983)
+. +++|++|++.. ...++++++++++++++ +||++||+|+|.
T Consensus 156 ~~---------r~~v~~y~~~~~~gd~~~t~~~~~~~~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~ 226 (470)
T 3p0w_A 156 QQ---------RDSAPMLAYLFYVGDRRKTDLPYLEGANGADDWLRLRHEAAMTPAAIARLAEAATERYGFADFKLKGGV 226 (470)
T ss_dssp CC---------CSEEEBCEEECCBCCGGGSCSCCCCCCTTCCHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred CC---------CCeEEEeeeeccccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 65 58899987631 12579999999999998 699999999997
Q ss_pred CCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--C----hHHHHHHHhhcCCcEE
Q 041113 681 RADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--N----EEDIIKYCEESGLPVA 754 (983)
Q Consensus 681 ~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~----~~~~~~l~~~~~ipIa 754 (983)
.++++|+++|++||+++ |++.||||+|++||+++|+++++.|+++ +.|||||++ | .+++++|++++++|||
T Consensus 227 -~~~~~Di~rv~avRea~-pd~~L~vDaN~~w~~~~Ai~~~~~Le~~-l~~iEeP~~~~d~~~~~~~~~~l~~~~~iPIa 303 (470)
T 3p0w_A 227 -MPGAEEMEAIAAIKARF-PHARVTLDPNGAWSLNEAIALCKGQGHL-VAYAEDPCGPEAGYSGREVMAEFKRATGIPTA 303 (470)
T ss_dssp -SCHHHHHHHHHHHHHHC-TTSEEEEECTTBBCHHHHHHHHTTCTTT-CSEEESCBCCBTTBCHHHHHHHHHHHHCCCEE
T ss_pred -CCHHHHHHHHHHHHHhC-CCCeEEeeCCCCCCHHHHHHHHHhcccc-ceeecCCCChhhccchHHHHHHHHhcCCCCEE
Confidence 37899999999999997 8999999999999999999999999999 999999998 4 5789999999999999
Q ss_pred eCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhh
Q 041113 755 LDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQ 833 (983)
Q Consensus 755 ~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~ 833 (983)
+||++.+.. .+..+++.+ +|++|+|+ ++|||+++++++++|+++|++++.+++.+++|++++++|+++++||.
T Consensus 304 ~dE~~~~~~-----~~~~~l~~~a~div~~d~-~~GGit~a~kia~lA~a~gv~~~~h~~~e~~I~~aA~~hlaaa~pn~ 377 (470)
T 3p0w_A 304 TNMIATDWR-----QMGHAVQLHAVDIPLADP-HFWTMQGSVRVAQLCDEWGLTWGSHSNNHFDVSLAMFTHVAAAAPGN 377 (470)
T ss_dssp ESSSSCSHH-----HHHHHHHTTCCSEEBCCH-HHHCHHHHHHHHHHHHHHTCCCBCCCCSCCHHHHHHHHHHHHTCCSC
T ss_pred eCCccCCHH-----HHHHHHHcCCCCEEEecC-ccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCc
Confidence 999988864 355556544 79999999 79999999999999999999988888889999999999999999863
Q ss_pred hhhhhhhccccCCCCCccCccchhcc---cccCCCCCceeec----cCCCCeeeEEecchhhhhhhccc
Q 041113 834 NAYLCKVMNRELCPPVAQGLGTYQWL---KEDVTTDPISICH----NSCRGFVEASVAKATHILQNLQI 895 (983)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~g~~~~~~~---~~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~ 895 (983)
. ..++.+..+ ..+++.+|+.+++ +|++|||||++| ++.++++..
T Consensus 378 --~--------------~~~d~~~~~~~~~~~l~~~p~~~~dG~i~vP~~PGLGveld--~~~l~~~~~ 428 (470)
T 3p0w_A 378 --I--------------TAIDTHWIWQEAQERLTREPLRIQGGHVAVPERPGLGIEID--MDRVMAAHA 428 (470)
T ss_dssp --C--------------CCBCCCHHHHTTTCCCBSSCCCEETTEEECCSSSBTSCCBC--HHHHHHHHH
T ss_pred --c--------------eeeccccccccchhhhcCCCceeECCEEECCCCCCcCceeC--HHHHHHhhh
Confidence 0 011221111 2477788888874 999999999999 777766543
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-54 Score=496.74 Aligned_cols=358 Identities=17% Similarity=0.167 Sum_probs=290.6
Q ss_pred ceeEeEEEEEEEEeeCCCCCcccccc--ccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHH-HHHhHh
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYID--HNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLR-FLLHFM 568 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~--~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~-~~~~~l 568 (983)
.|||++|+++.+++|++.||.++.+. . ..++.++|+|+|++|++||||+.+ + ++.+.+...++ .+.|.|
T Consensus 38 ~MkI~~i~~~~~~~pl~~p~~~s~g~~~~----~~~~~v~V~v~td~G~~G~GE~~~-g---~~~~~~~~~i~~~l~p~l 109 (428)
T 3bjs_A 38 DMKITKINAIPLSYRLPEGKTVTMGVGST----IKRDAIIIRVETSEGITGYGEAHP-G---RSPGAITSLIHNTIAPML 109 (428)
T ss_dssp -CBEEEEEEEEEEEECC---CCBCSSCBC----SEEEEEEEEEEETTSCEEEEEECC-T---TCHHHHHHHHHHTTTTTT
T ss_pred CCEEeEEEEEEEecccCCccccccccccc----ccccEEEEEEEECCCCEEEEEecC-C---CCHHHHHHHHHHHHHHHh
Confidence 48999999999999999999998875 3 347899999999999999999987 3 34444555666 488999
Q ss_pred ccCcccccccccccCchhhhhhhc-CCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTL-GIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKIC 647 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~ 647 (983)
+|+++.++..++..+.. ... .....+..++|++||||||||+.||.+|+|||+||||.+ ++||+|
T Consensus 110 iG~d~~~~~~i~~~l~~----~~~~~~~~~g~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg~~----------~~vp~~ 175 (428)
T 3bjs_A 110 IGMKATDCVGAWQRVHR----MQLSSHGLGAGAALAISGIDMALWDIRGKAANMPLYELLGGSK----------RRIPAY 175 (428)
T ss_dssp TTSBTTCHHHHHHHHHH----HTTTTTSCTHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCC----------CCEEEE
T ss_pred CCCCccCHHHHHHHHHH----hhhhccCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCC----------Cceeee
Confidence 99998876555432211 101 111122367899999999999999999999999999974 579999
Q ss_pred Eeec-CCCCH-HHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcc
Q 041113 648 ALID-SNKSP-VEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIK 725 (983)
Q Consensus 648 ~~~~-~~~~~-~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~ 725 (983)
++.. ...++ +++.+.+++++++||++||+|+|. +++.|+++|++||+++|+++.|++|+|++||.++|+++++.|+
T Consensus 176 ~sg~~~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~--~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~eai~~~~~L~ 253 (428)
T 3bjs_A 176 AGGIALGYQPKESLAEEAQEYIARGYKALKLRIGD--AARVDIERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLA 253 (428)
T ss_dssp EESSCSCSCCHHHHHHHHHHHHHHTCSEEEEECCS--CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHH
T ss_pred eeccccCCChHHHHHHHHHHHHHCCCCEEEECCCC--CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 8611 13578 999999999999999999999996 7899999999999999999999999999999999999999999
Q ss_pred cCCCceeecCCC--ChHHHHHHHhhcC-CcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHH
Q 041113 726 DCDLQYIEEPVQ--NEEDIIKYCEESG-LPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWA 801 (983)
Q Consensus 726 ~~~i~~iEeP~~--~~~~~~~l~~~~~-ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A 801 (983)
++++.|||||++ +++.+++|+++++ +||++||++.+.. .+..+++.+ +|++++|++++||++++++++++|
T Consensus 254 ~~~i~~iEqP~~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~-----~~~~~i~~~~~d~v~ik~~~~GGitea~~ia~~A 328 (428)
T 3bjs_A 254 EIQAGWLEEPFACNDFASYREVAKITPLVPIAAGENHYTRF-----EFGQMLDAGAVQVWQPDLSKCGGITEGIRIAAMA 328 (428)
T ss_dssp HTTCSCEECCSCTTCHHHHHHHTTTCSSSCEEECTTCCSHH-----HHHHHHTTCCEEEECCBTTTSSCHHHHHHHHHHH
T ss_pred hcCCCEEECCCCccCHHHHHHHHHhCCCCcEEcCCCcCCHH-----HHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHH
Confidence 999999999998 7889999999999 9999999999865 466677655 799999999999999999999999
Q ss_pred HHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccc-hhcccccCCCCCce-eec----cCC
Q 041113 802 QRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGT-YQWLKEDVTTDPIS-ICH----NSC 875 (983)
Q Consensus 802 ~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~d~~~~p~~-~~~----~P~ 875 (983)
+++|+++++| ++||++++++++|++++++|+. . .+ ++++. .. +.+ ++.+|+. +++ +|+
T Consensus 329 ~~~gi~~~~~-~~es~i~~~a~~hlaaa~~~~~--~---~E--------~~~~~~~~-~~~-~~~~~~~~~~~G~~~~p~ 392 (428)
T 3bjs_A 329 SAYRIPINAH-SSATGLNHAATIHFLAATENAG--Y---FE--------ACVSKFNP-FRD-MFGTSFEIGADGCVEPPD 392 (428)
T ss_dssp HHTTCCBCCB-CCSSHHHHHHHHHHHHHCTTBC--C---EE--------EECCSSCT-TTS-TTTC-CCCCTTSEECCCC
T ss_pred HHcCCeEEec-CCCcHHHHHHHHHHHHhCCCcc--c---ee--------cccccccc-HHH-hccCCCeeeeCCEEECCC
Confidence 9999998877 9999999999999999998631 1 11 11111 12 333 6667777 763 899
Q ss_pred CCeeeEEecchhhhhhhcccc
Q 041113 876 RGFVEASVAKATHILQNLQIN 896 (983)
Q Consensus 876 ~pGlGv~~d~a~~~~~~~~~~ 896 (983)
+||||+++| ++.++++.+.
T Consensus 393 ~PGlGv~~d--~~~l~~~~~~ 411 (428)
T 3bjs_A 393 APGLGIEVD--ESIFEKYPAV 411 (428)
T ss_dssp SSBTCCCCC--GGGTTTSCCC
T ss_pred CCCCCCeEC--HHHHHhhhcc
Confidence 999999999 7777776643
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-55 Score=498.18 Aligned_cols=348 Identities=15% Similarity=0.184 Sum_probs=271.3
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAK 572 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~ 572 (983)
|||++|+++.++ | .++.++|||+||+|++||||+.. ..++... ..++.+.|.|+|++
T Consensus 1 MkIt~ie~~~~~-----~-------------~~~~~~V~v~td~G~~G~GE~~~---~~~~~~~--~i~~~l~p~liG~d 57 (400)
T 4dxk_A 1 MKITKLETVRVA-----E-------------RTNLLWVLVHTDEGITGLGETFF---GAETVET--YVHEYIAPRVIGRD 57 (400)
T ss_dssp CCEEEEEEEEET-----T-------------STTEEEEEEEETTSCCEEEEEES---CHHHHHH--HHHHTHHHHHTTSC
T ss_pred CeEEEEEEEEEC-----C-------------CCCEEEEEEEECCCCEEEEcCCC---CccHHHH--HHHHHHHHHhCCCC
Confidence 799999987663 1 14678999999999999999542 2333221 22345899999999
Q ss_pred ccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecC
Q 041113 573 ISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDS 652 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~ 652 (983)
+.+++.++..+ . ...+....+...+|++|||||||||+||.+|+|||+||||.. +++|++|+++..
T Consensus 58 p~~~~~~~~~~-~----~~~~~~~~g~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~---------r~~v~~yas~~~ 123 (400)
T 4dxk_A 58 PLQIDLLAQDL-V----GYLGFRSSGAEVRGNSAFDIALWDIFGKATNQPIAQLLGGFS---------RREIRTYNTCAG 123 (400)
T ss_dssp TTCHHHHHHHH-C----CSSSCSSCSHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCS---------CSCEEEEBC---
T ss_pred cchHHHHHHHH-H----HHhccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCCCc---------cCceeEEEeccc
Confidence 98876665432 1 111212334567899999999999999999999999999986 578999976421
Q ss_pred ------------------CCCHHH--------HHHHHHHhhhcCCCEEEEeccCC------------CChHHHHHHHHHH
Q 041113 653 ------------------NKSPVE--------VASIATTLVEEGFTAIKLKVARR------------ADPIKDAEVIQEV 694 (983)
Q Consensus 653 ------------------~~~~~~--------~~~~~~~~~~~G~~~~KiKig~~------------~~~~~d~~~v~~v 694 (983)
..++++ ..+.+++++++||++||+|+|.+ .+++.|+++|++|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~~~~G~~~~Kik~g~~~~~~~~~g~~~~~~~~~d~~~v~av 203 (400)
T 4dxk_A 124 TEYIKKATGQQTANYGLSGGKDYDDLNGFLHRADELAHSLLEDGITAMKIWPFDAAAEKTRGQYISMPDLKSALEPFEKI 203 (400)
T ss_dssp -------------------------------CHHHHHHHHHHTTCCEEEECTTHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchhcccccccHHHHHHHHHHhCCCEEEEcCCCccccccccCcCCHHHHHHHHHHHHHH
Confidence 011122 23556678899999999999720 1367899999999
Q ss_pred HHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHh
Q 041113 695 RKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEK 772 (983)
Q Consensus 695 r~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~ 772 (983)
|+++|+++.|++|+|++|++++|+++++.|+++++.|||||++ +.+++++|++++++||++||++.+.. .+..
T Consensus 204 R~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEeP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~-----~~~~ 278 (400)
T 4dxk_A 204 RKAVGDKMDIMVEFHSMWQLLPAMQIAKALTPYQTFWHEDPIKMDSLSSLTRYAAVSPAPISASETLGSRW-----AFRD 278 (400)
T ss_dssp HHHHGGGSEEEEECTTCBCHHHHHHHHHHTGGGCCSEEECCBCTTSGGGHHHHHHHCSSCEEECTTCCHHH-----HHHH
T ss_pred HHHcCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCEEEcCCCcccHHHHHHHHHhCCCCEEecCCcCCHH-----HHHH
Confidence 9999999999999999999999999999999999999999998 78899999999999999999999875 3666
Q ss_pred hcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCcc
Q 041113 773 YAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQ 851 (983)
Q Consensus 773 ~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~ 851 (983)
+++.+ +|++|+|++++|||+++++++++|+++|++++.|+ +.++|++++++||++++||+. . .+. + .
T Consensus 279 ~l~~~a~d~v~~d~~~~GGit~~~kia~~A~~~gi~~~~h~-~~s~i~~aa~~hlaaa~p~~~--~---~e~-~----~- 346 (400)
T 4dxk_A 279 LLETGAAGVVMLDISWCGGLSEARKIASMAEAWHLPVAPHX-CTGPVVLCASTHLSLNAPNAL--V---QES-V----R- 346 (400)
T ss_dssp HHHTTCCCEEEECTTTTTHHHHHHHHHHHHHHTTCCEEEC--CCCHHHHHHHHHHHHHCTTBC--C---EEC-C----T-
T ss_pred HHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecC-CCChHHHHHHHHHHHhCCCce--e---EEe-c----c-
Confidence 66554 79999999999999999999999999999988665 459999999999999999641 1 010 0 0
Q ss_pred CccchhcccccCCCCCceeec----cCCCCeeeEEecchhhhhhhcccccc
Q 041113 852 GLGTYQWLKEDVTTDPISICH----NSCRGFVEASVAKATHILQNLQINND 898 (983)
Q Consensus 852 g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~~~ 898 (983)
.+...+.+|++.+|+.+++ +|++|||||++| ++.++++++...
T Consensus 347 --~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGveld--~~~l~~~~~~~~ 393 (400)
T 4dxk_A 347 --AFYKTWYRDLVTALPEVKNGMITVPPGAGLGMELH--PDIEKTFTVSRR 393 (400)
T ss_dssp --TC-CCTHHHHBSCCCEEETTEEECCSSSBTSCCBC--TTGGGTSCEEEE
T ss_pred --cccchhhHhhcCCCCeeeCCEEECCCCCCCCCcCC--HHHHhhccceee
Confidence 1122345577788888884 999999999999 778888776543
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-54 Score=494.48 Aligned_cols=354 Identities=16% Similarity=0.161 Sum_probs=284.0
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAK 572 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~ 572 (983)
|||++|+++.+..+ ..|..+..+.+. .....++|+|+||+|++||||+.+. + .+...++.++|.|+|++
T Consensus 5 ~~It~v~~~~v~~~-d~~~~~~~g~~~---~~~~~~iV~v~td~Gi~G~GE~~~~----~---~v~~~i~~l~p~LiG~d 73 (450)
T 3mzn_A 5 PKITKMNVVPVAGE-DGFLLNLSGGHE---PWFIRCVLVLEDESGNRGVGEIPSS----E---GILNGLEKCRSLVEGAR 73 (450)
T ss_dssp CBEEEEEEEEEEEE-CCCBEETTEECC---SEEEEEEEEEEETTSCEEEEEEECC----H---HHHHHHHHTHHHHTTCB
T ss_pred CEEEEEEEEEeccc-CccccccccCCC---CcceEEEEEEEECCCCEEEEeCCCc----H---HHHHHHHHHHHHhCCCC
Confidence 69999999999887 555554444331 2367889999999999999998542 2 23445677899999999
Q ss_pred ccccccccccCchhhhhhh-cCCC-----CCcchhhHHHHHHHHHHHHHHHHcCCChhhhcC--CCCcccccccccccee
Q 041113 573 ISYFLPLLKGSFSSWIWST-LGIP-----ACEIFPSVRCGLEMAILNAIAVKHGSSFLNILY--PLTEIDEEISKRSTSI 644 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLG--g~~~~~~~~~~~~~~i 644 (983)
+.+++.++..+... ++.. .+.. ......+|++|||+|||||+||.+|+|||+||| |+. +++|
T Consensus 74 p~~ie~i~~~~~~~-~~~~~~g~~G~~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLG~~G~~---------r~~v 143 (450)
T 3mzn_A 74 VNEVKQVLSRARGL-LAQGGPEERGRQTFDLRVAVHVITAIESALFDLFGQALGMPVADLLGQYGRQ---------RDEV 143 (450)
T ss_dssp GGGHHHHHHHHHHH-HGGGCCCCCCSSSSCCCSHHHHHHHHHHHHHHHHHHHHTCBGGGGSTTTCCC---------CSEE
T ss_pred hhhHHHHHHHHHHH-hhcccCCCcccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCc---------CceE
Confidence 99887776543322 1110 0100 012457899999999999999999999999999 555 5789
Q ss_pred EEEEeec----------------------------CCCCHHHHHHHHHHhhh-cCCCEEEEeccCCCChHHHHHHHHHHH
Q 041113 645 KICALID----------------------------SNKSPVEVASIATTLVE-EGFTAIKLKVARRADPIKDAEVIQEVR 695 (983)
Q Consensus 645 ~~~~~~~----------------------------~~~~~~~~~~~~~~~~~-~G~~~~KiKig~~~~~~~d~~~v~~vr 695 (983)
++|++.. ...++++++++++++++ +||++||+|+|. .++++|+++|++||
T Consensus 144 ~~y~~~~~~gd~~~t~~~~~s~~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~-~~~~~Di~~v~avR 222 (450)
T 3mzn_A 144 EALGYLFLLGDPDKTDLPYPRVADPVDAWDEVRYREAMTPEAVANLARAAYDRYGFKDFKLKGGV-LRGEEEADCIRALH 222 (450)
T ss_dssp EBCEEEECBCCGGGSSSCCCCCSSCCSHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSEEEEECSS-SCHHHHHHHHHHHH
T ss_pred EeeeeeccccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEEECCCC-CCHHHHHHHHHHHH
Confidence 9887531 12479999999999987 699999999997 37899999999999
Q ss_pred HHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--C----hHHHHHHHhhcCCcEEeCCCccCcCCChHHH
Q 041113 696 KKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--N----EEDIIKYCEESGLPVALDETIDKFQKDPLNM 769 (983)
Q Consensus 696 ~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~----~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~ 769 (983)
+++ |++.||||+|++||+++|+++++.|+++ +.|||||++ | .+++++|++++++|||+||++.+.. .
T Consensus 223 ea~-pd~~L~vDaN~~w~~~~A~~~~~~L~~~-i~~iEeP~~~~d~~~~~~~~~~l~~~~~iPIa~dE~~~~~~-----~ 295 (450)
T 3mzn_A 223 EAF-PEARLALDPNGAWKLDEAVRVLEPIKHL-LSYAEDPCGQEGGFSGRETMAEFKKRTGLPTATNMIATDYK-----Q 295 (450)
T ss_dssp HHC-TTSEEEEECTTCBCHHHHHHHHGGGGGG-CSEEESSBCCBTTBCHHHHHHHHHHHHCCCEEESSSSSSHH-----H
T ss_pred HhC-CCCeEEEECCCCCCHHHHHHHHHHhhhc-cceeeCCCCcccccchHHHHHHHHHhcCCCEEeCCccCCHH-----H
Confidence 997 8999999999999999999999999999 999999998 4 5789999999999999999988864 3
Q ss_pred HHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCC
Q 041113 770 LEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPP 848 (983)
Q Consensus 770 ~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~ 848 (983)
+..+++. .+|++++|+ ++|||+++++++++|+++|++++.+++.+++|++++++|+++++||. .
T Consensus 296 ~~~~i~~~a~di~~~d~-~~GGit~a~kia~lA~a~gv~~~~h~~~~~~I~~aA~~hlaaa~p~~--~------------ 360 (450)
T 3mzn_A 296 LQYAVQLNSVDIPLADC-HFWTMQGAVAVGELCNEWGMTWGSHSNNHFDISLAMMTHVAAACPGE--I------------ 360 (450)
T ss_dssp HHHHHHHTCCSEEBCCH-HHHCHHHHHHHHHHHHHTTCCCBCCCCSCCHHHHHHHHHHHHTCCSC--C------------
T ss_pred HHHHHHcCCCCEEEecC-ccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCc--c------------
Confidence 5555554 479999998 79999999999999999999988888889999999999999999852 0
Q ss_pred CccCccchhccc--ccCCCCCceeec----cCCCCeeeEEecchhhhhhhcc
Q 041113 849 VAQGLGTYQWLK--EDVTTDPISICH----NSCRGFVEASVAKATHILQNLQ 894 (983)
Q Consensus 849 ~~~g~~~~~~~~--~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~ 894 (983)
..++.+.++. .+++.+|+.+++ +|++|||||++| ++.++++.
T Consensus 361 --~~~d~~~~~~~~~~l~~~~~~~~~G~i~vp~~PGLGveld--~~~l~~~~ 408 (450)
T 3mzn_A 361 --TAIDTHWIWQDGQRITREPFQIRDGKLTVPKTPGLGIELD--DDKLMEAH 408 (450)
T ss_dssp --CCBCCCHHHHTTCCSBSSCCCCBTTEEECCCSSBTSCCBC--HHHHHHHH
T ss_pred --hhhccccccccccccccCCCeEECCEEECCCCCcCCCccC--HHHHHHHH
Confidence 1123322223 477788888874 999999999999 66666644
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* 4gyp_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-54 Score=496.33 Aligned_cols=356 Identities=15% Similarity=0.154 Sum_probs=282.8
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccC
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGA 571 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~ 571 (983)
.|||++|+++.+..+ ..+..+..+.+. ......+|+|+||+|++||||+.+. +. +...++.+.|.|+|+
T Consensus 8 ~~~It~v~v~~v~~~-d~~~~~~~g~h~---~~~~~~iV~v~td~Gi~G~GE~~~~----~~---v~~~i~~l~p~LiG~ 76 (455)
T 3pfr_A 8 VPVITDMKVIPVAGH-DSMLMNVGGAHS---PYFTRNIVILTDNSGHTGVGEAPGG----AT---IENALTEAIPHVVGR 76 (455)
T ss_dssp CCBEEEEEEEEEEEE-CCCBEETTEECC---SEEEEEEEEEEETTSCEEEEEEECS----HH---HHHHHHHHGGGTTTC
T ss_pred CCEEEEEEEEEeccC-CccccccccCCC---CcceEEEEEEEECCCCEEEEeCCCc----HH---HHHHHHHHHHHhcCC
Confidence 479999999999998 666665555541 2367789999999999999998542 22 344567789999999
Q ss_pred cccccccccccCchhhhhhhcCCCCCc-----chhhHHHHHHHHHHHHHHHHcCCChhhhcC-CCCccccccccccceeE
Q 041113 572 KISYFLPLLKGSFSSWIWSTLGIPACE-----IFPSVRCGLEMAILNAIAVKHGSSFLNILY-PLTEIDEEISKRSTSIK 645 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~aid~AlwDl~gk~~g~pv~~lLG-g~~~~~~~~~~~~~~i~ 645 (983)
++.+++.++..++....+...+....+ ...+|++|||+|||||+||.+|+|||+||| |+. +++|+
T Consensus 77 dp~~ie~i~~~~~~~~~~~~~~~g~~G~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGgG~~---------r~~v~ 147 (455)
T 3pfr_A 77 PISILNKIVNDMHNGYLDADYDTFGKGAWTFELRVNAVAALEAALLDLMGQFLGVPVAELLGPGKQ---------RDEVT 147 (455)
T ss_dssp BGGGHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHHHHHHHTSBGGGGSTTSCC---------CSEEE
T ss_pred ChhHHHHHHHHHHhhccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCc---------CCeEE
Confidence 999887776543220000000000111 127899999999999999999999999999 665 57899
Q ss_pred EEEeecC----------------------------CCCHHHHHHHHHHhhh-cCCCEEEEeccCCCChHHHHHHHHHHHH
Q 041113 646 ICALIDS----------------------------NKSPVEVASIATTLVE-EGFTAIKLKVARRADPIKDAEVIQEVRK 696 (983)
Q Consensus 646 ~~~~~~~----------------------------~~~~~~~~~~~~~~~~-~G~~~~KiKig~~~~~~~d~~~v~~vr~ 696 (983)
+|++... ..++++++++++++++ +||++||+|+|. .++++|+++|++||+
T Consensus 148 ~y~~~~~~gd~~~~~~~~~~s~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~-~~~~~Di~~v~avRe 226 (455)
T 3pfr_A 148 VLGYLFYVGDDKITDLPYQQPVTGKHEWYDIRRKKAMDTQAVIELAAASKDRYGFKDFKLKGGV-FEGSKEIDTVIELKK 226 (455)
T ss_dssp BCEEECCBCCGGGSCSCCCCCCCSSCTHHHHTTSCBCSHHHHHHHHHHHHHHHCCSCEEEECSS-SCHHHHHHHHHHHHH
T ss_pred EeeeeccccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEEEcCCC-CCHHHHHHHHHHHHH
Confidence 9875310 2579999999999987 699999999997 378999999999999
Q ss_pred HcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--C----hHHHHHHHhhcCCcEEeCCCccCcCCChHHHH
Q 041113 697 KVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--N----EEDIIKYCEESGLPVALDETIDKFQKDPLNML 770 (983)
Q Consensus 697 ~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~----~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~ 770 (983)
++ |++.||||+|++||+++|+++++.|+++ +.|||||++ | ++++++|++++++|||+||++.+.. .+
T Consensus 227 a~-pd~~L~vDaN~~w~~~~A~~~~~~L~~~-l~~iEeP~~~~d~~~~~~~~~~l~~~~~iPIa~dE~~~~~~-----~~ 299 (455)
T 3pfr_A 227 HF-PDARITLDPNGCWSLDEAIQLCKGLNDV-LTYAEDPCIGENGYSGREIMAEFRRRTGIPTATNMIATNWR-----EM 299 (455)
T ss_dssp HC-TTCCEEEECTTBSCHHHHHHHHTTCTTT-CSEEESCBCCBTTBCHHHHHHHHHHHHCCCEEESSSCCSHH-----HH
T ss_pred hC-CCCeEeecCCCCCCHHHHHHHHHhhccc-ceeeecCCChhhccchHHHHHHHHhcCCCCEEeCCCcCCHH-----HH
Confidence 97 8999999999999999999999999999 999999998 4 5789999999999999999988764 35
Q ss_pred HhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCC
Q 041113 771 EKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPV 849 (983)
Q Consensus 771 ~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~ 849 (983)
..+++. .+|++|+|+ ++|||+++++++++|+++|++++.+++.+++|++++++|+++++||. .
T Consensus 300 ~~~i~~~a~di~~~d~-~~GGit~a~kia~lA~a~gv~~~~h~~~~~~i~~aa~~hlaaa~p~~--~------------- 363 (455)
T 3pfr_A 300 CHAIMLQSVDIPLADP-HFWTLTGASRVAQLCNEWGLTWGCHSNNHFDISLAMFSHVGAAAPGN--P------------- 363 (455)
T ss_dssp HHHHHHTCCSEEBCCH-HHHCHHHHHHHHHHHHHTTCCCBCCCCSCCHHHHHHHHHHHHHCCSC--C-------------
T ss_pred HHHHHcCCCCEEEecC-CcCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCc--c-------------
Confidence 555554 479999998 79999999999999999999988887888999999999999999863 0
Q ss_pred ccCccchhccc---ccCCCCCceeec----cCCCCeeeEEecchhhhhhhcc
Q 041113 850 AQGLGTYQWLK---EDVTTDPISICH----NSCRGFVEASVAKATHILQNLQ 894 (983)
Q Consensus 850 ~~g~~~~~~~~---~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~ 894 (983)
..++.+..+. .+++.+|+.+++ +|++|||||++| ++.++++.
T Consensus 364 -~~~d~~~~~~~~~~~l~~~p~~~~dG~i~vp~~PGLGveld--~~~l~~~~ 412 (455)
T 3pfr_A 364 -TALDTHWIWQEGDFYLTKNPLEIKDGKIKLNDKPGLGIELN--MDNVLKAH 412 (455)
T ss_dssp -CCBCCCGGGTTTTCCSBSSCCCEETTEEECCSCSBTCCCBC--HHHHHHHH
T ss_pred -hhhccccccccchhhccCCCCeEECCEEeCCCCCcCCcccC--HHHHHHHH
Confidence 0122211111 467788888874 999999999999 77766644
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-54 Score=516.73 Aligned_cols=424 Identities=24% Similarity=0.351 Sum_probs=326.9
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+++.+++||++|.++|||||||+||+|+++.+...... ...|. ..+...... ..+.++++.++++++
T Consensus 172 ~~~~i~~A~~~A~~~~~GPV~l~iP~d~~~~~~~~~~~------~~~~~--~~~~~~~~~-----~~~~~~~~~i~~~~~ 238 (604)
T 2x7j_A 172 IRTLASRAAGEAQKRPMGPVHVNVPLREPLMPDLSDEP------FGRMR--TGRHVSVKT-----GTQSVDRESLSDVAE 238 (604)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEEEECCSCCCCCTTSCT------TCCSS--SSCSSEEEC-----CEEECCTGGGHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCcEEEEcccCccCCCcccccc------ccccc--ccccccccc-----cCccCChhhHHHHHH
Confidence 78899999999999999999999999986643311000 00000 000010000 012345578999999
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccC-ccccccCC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLS-ESVKDWIQ 160 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~-~~~~~~~~ 160 (983)
+|++||||+|++|+++..++.+++.+|||++|+||++|++++ ++.+|++||++ +|.++..... .....++
T Consensus 239 ~l~~A~rPvIl~G~g~~~~a~~~l~~lae~~~~PV~~t~~~~------~~~~~~~~p~~--~g~~~~~~~~~~~~~~~~- 309 (604)
T 2x7j_A 239 MLAEAEKGMIVCGELHSDADKENIIALSKALQYPILADPLSN------LRNGVHDKSTV--IDAYDSFLKDDELKRKLR- 309 (604)
T ss_dssp HHHHCSSEEEEECCCCCHHHHHHHHHHHHHHTCCEEECGGGT------TTBSSSCCTTE--ECCHHHHTTSHHHHHHHC-
T ss_pred HHhhcCCeEEEECCCCcHHHHHHHHHHHHhcCceEEEccccc------ccccCCCCcce--echHHHHhcCchhhhhcC-
Confidence 999999999999999865556899999999999999999854 24558899995 6877744333 3333454
Q ss_pred CCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccC-CCCChhHHHHHHHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQV-PHRSSKWCSFLRALD 239 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~-~~~~~~w~~~~~~~~ 239 (983)
+|+||+||+++.+..+..|.....+.++||||+|+.++++++++++.+++|++.++++|.+.+. ......|.+++...+
T Consensus 310 ~Dlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~ 389 (604)
T 2x7j_A 310 PDVVIRFGPMPVSKPVFLWLKDDPTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLTAATRSSEWLEKWQFVN 389 (604)
T ss_dssp CSEEEEESSCCSCHHHHHHHHHCTTSEEEEECTTCCCCCTTSCCSEEECSCHHHHHHHHHHTSCSSCCCCHHHHHHHHHH
T ss_pred CCEEEEECCcCccHHHHHHHhhCCCCeEEEECCCCCccCCCccceEEEEcCHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Confidence 8999999999988887777765445579999999999999999999999999999999998774 333457877665554
Q ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
......... .....++++..+++.|++.+|++++|++|+|+++++...+... ..+|++|+ .+.+
T Consensus 390 ~~~~~~~~~-~~~~~~~~~~~~~~~L~~~lp~d~iv~~d~g~~~~~~~~~~~~----~~~~~~~~-----------~~~G 453 (604)
T 2x7j_A 390 GRFREHLQT-ISSEDVSFEGNLYRILQHLVPENSSLFVGNSMPIRDVDTFFEK----QDRPFRIY-----------SNRG 453 (604)
T ss_dssp HHHHHHHHT-SCCCCTTSHHHHHHHHHHHSCTTCEEEECTTHHHHHHHHHCCC----BSCCCEEE-----------CCTT
T ss_pred HHHHHHHHh-hcccCCCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHhccc----CCCCceEE-----------eCCC
Confidence 433222211 1123579999999999999999999999999976665544321 01133333 2455
Q ss_pred CCCCCccchHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccc
Q 041113 320 RGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILD 399 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~ 399 (983)
+|+||+ ++|+|+|+++|.+++||+++|||+|+|++|||+|+++ +++|++|||+||++|+|++.+++... ...++
T Consensus 454 ~~~ig~--~l~~AiGaala~~~~vv~i~GDGsf~~~~~eL~ta~~--~~lp~~ivv~NN~~~~i~~~~~~~q~--~~~~~ 527 (604)
T 2x7j_A 454 ANGIDG--VVSSAMGVCEGTKAPVTLVIGDLSFYHDLNGLLAAKK--LGIPLTVILVNNDGGGIFSFLPQASE--KTHFE 527 (604)
T ss_dssp TCCSSS--HHHHHHHHHHHHTSCEEEEEEHHHHHHTGGGGHHHHH--HCCCEEEEEEECSSCGGGGGSGGGSC--HHHHH
T ss_pred cCCcCc--HHHHHHHHHhcCCCcEEEEEccHHHHhHHHHHHHhhh--cCCCeEEEEEeCCCCcccccCCCCcc--chhhH
Confidence 677888 9999999999988999999999999999999999999 99999999999999999877543211 12334
Q ss_pred cccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHHHHHHHHHH
Q 041113 400 QYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQS 469 (983)
Q Consensus 400 ~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~~~~~~~~~ 469 (983)
+++.+.+++||.++|++||+++++|++.+||+++|+++++.++|+||||.++++++...++++++.+.+.
T Consensus 528 ~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~liev~~~~~~~~~~~~~~~~~~~~~ 597 (604)
T 2x7j_A 528 DLFGTPTGLDFKHAAALYGGTYSCPASWDEFKTAYAPQADKPGLHLIEIKTDRQSRVQLHRDMLNEAVRE 597 (604)
T ss_dssp HHTTCCCCCCTHHHHHHTTCEEECCSSHHHHHHHCCCCCSSCCEEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCCHHHHHHHcCCeEEecCCHHHHHHHHHHHHhCCCCEEEEEECCccccHHHHHHHHHHHHHH
Confidence 4555567899999999999999999999999999999998899999999999999999999998877654
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-54 Score=488.95 Aligned_cols=352 Identities=18% Similarity=0.216 Sum_probs=288.2
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHH-HHHhHhccC
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLR-FLLHFMTGA 571 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~-~~~~~l~g~ 571 (983)
|||++|+++.+++|++.||.++.+.. ...++.++|+|+|++|++||||+.+.+.+. ..+...+. .++|.|+|+
T Consensus 2 ~kI~~i~~~~~~~pl~~p~~~~~~~~---~~~~~~~~V~v~td~G~~G~Ge~~~~g~~~---~~~~~~i~~~l~~~l~G~ 75 (371)
T 2ovl_A 2 SLIERVRTDLYRIPLPTRLTDSTHGA---MMDFELITVRIEDSDGATGLGYTYTVNHGG---AAVATMVDKDLRGCLLGA 75 (371)
T ss_dssp -CEEEEEEEEEEEEEEEEEBCTTTCC---EEEEEEEEEEEEETTSCEEEEEEEEESSSH---HHHHHHHHHTTHHHHTTS
T ss_pred CceEEEEEEEEeccCCCCCccccccc---cCcceEEEEEEEECCCCEEEEeecCCCCch---HHHHHHHHHHHHHHhcCC
Confidence 79999999999999999998887642 034889999999999999999998753222 23344443 588999999
Q ss_pred cccccccccccCchhhhhhh-cCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEee
Q 041113 572 KISYFLPLLKGSFSSWIWST-LGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALI 650 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~ 650 (983)
++.++..++..+ ... .+....+..++|++|||+||||++||.+|+|||+||||.+ ++||+|++.
T Consensus 76 d~~~~~~~~~~l-----~~~~~~~~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~----------~~v~~y~~~ 140 (371)
T 2ovl_A 76 DAEQIEKIWQSM-----WWRLHYAGRGGHATSAISAVDIALWDLKGIRARTPLWKLFGGYD----------PVVPVYAGG 140 (371)
T ss_dssp CTTCHHHHHHHH-----HHHTCTTCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCC----------SEEEEEEEC
T ss_pred CcccHHHHHHHH-----HHHhhhcCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC----------CCeeEEEeC
Confidence 988765554322 111 1112234568899999999999999999999999999975 679999874
Q ss_pred cC-CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCC
Q 041113 651 DS-NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729 (983)
Q Consensus 651 ~~-~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i 729 (983)
+. ..+++++.+.+++++++||++||+|+|. .+++.|+++|++||+++|+++.|++|+|++||.++|+++++.|+++++
T Consensus 141 ~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~-~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i 219 (371)
T 2ovl_A 141 IDLELPVADLKTQADRFLAGGFRAIKMKVGR-PDLKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDL 219 (371)
T ss_dssp CBTTSCHHHHHHHHHHHHHTTCSCEEEECCC-SSHHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCC
T ss_pred CCcCCCHHHHHHHHHHHHHcCCCEEEECCCC-CCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 32 2379999999999999999999999997 378999999999999999999999999999999999999999999999
Q ss_pred ceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHcCC
Q 041113 730 QYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRHGK 806 (983)
Q Consensus 730 ~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi 806 (983)
.|||||++ +++.+++|++++++||++||++.+..+ +..+++ ..+|++++|++++||++++++++++|+++|+
T Consensus 220 ~~iEqP~~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~-----~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~gi 294 (371)
T 2ovl_A 220 HWIEEPTIPDDLVGNARIVRESGHTIAGGENLHTLYD-----FHNAVRAGSLTLPEPDVSNIGGYTTFRKVAALAEANNM 294 (371)
T ss_dssp SEEECCSCTTCHHHHHHHHHHHCSCEEECTTCCSHHH-----HHHHHHHTCCSEECCCTTTTTSHHHHHHHHHHHHHTTC
T ss_pred CEEECCCCcccHHHHHHHHhhCCCCEEeCCCCCCHHH-----HHHHHHcCCCCEEeeCccccCCHHHHHHHHHHHHHcCC
Confidence 99999998 788999999999999999999998653 555554 4579999999999999999999999999999
Q ss_pred cEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeEE
Q 041113 807 MAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEAS 882 (983)
Q Consensus 807 ~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~ 882 (983)
++++|++.+ +++|++++++|+. . . ++ ..++..|++.+|+.+++ +|++||||++
T Consensus 295 ~~~~h~~~~------a~~hlaaa~~~~~--~---~--e~----------~~~~~~~~~~~~~~~~~G~~~~p~~PGlGv~ 351 (371)
T 2ovl_A 295 LLTSHGVHD------LTVHALASVPHRT--Y---M--EA----------HGFGLHAYMAEPMAVTDGCVSAPDRPGHGVV 351 (371)
T ss_dssp CEEECSCHH------HHHHHHTSCTTEE--E---E--EC----------C---CGGGBSSCCCCBTTEEECCCSSBTCCC
T ss_pred eEccccHHH------HHHHHHhhCCCCc--c---c--cc----------ChHHHHHhccCCCeeeCCEEECCCCCCCCCc
Confidence 999888743 8999999998641 1 0 01 12345677777888774 8999999999
Q ss_pred ecchhhhhhhcccc
Q 041113 883 VAKATHILQNLQIN 896 (983)
Q Consensus 883 ~d~a~~~~~~~~~~ 896 (983)
+| ++.++++.+.
T Consensus 352 ~d--~~~l~~~~~~ 363 (371)
T 2ovl_A 352 LD--FERLGRLAVG 363 (371)
T ss_dssp BC--HHHHHTTBC-
T ss_pred cC--HHHHHhhhcc
Confidence 99 8888887654
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-54 Score=482.03 Aligned_cols=329 Identities=22% Similarity=0.266 Sum_probs=284.2
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHHHHHhHhccC
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLRFLLHFMTGA 571 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~~~~~~l~g~ 571 (983)
|||++|+++.+++|++.||.++.+.. +.++.++|+|+|++|++||||+.+.+ +++++...+...++.+.|.|+|+
T Consensus 2 mkI~~i~~~~~~~pl~~p~~~s~~~~----~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~i~~l~~~l~g~ 77 (345)
T 2zad_A 2 SRIVNVKLSLKRYEYEKPFHITGSVS----SESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGI 77 (345)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEEETTSCEEEEEECCCHHHHCCCHHHHHHTHHHHHHHHTTC
T ss_pred CEEEEEEEEEEEeeccCCEEecCeeE----eeceEEEEEEEECCCCEEEEEecCCCCcCCCCHHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999887654 45899999999999999999998764 34566666666777799999999
Q ss_pred cccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeec
Q 041113 572 KISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALID 651 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~ 651 (983)
++.+++.++. .+. .....++|++|||+||||+.||.+|+|||+|||| . +++||+|++++
T Consensus 78 d~~~~~~~~~---------~l~--~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg-~---------~~~v~~~~~~~ 136 (345)
T 2zad_A 78 DVRNYARIFE---------ITD--RLFGFPSLKAAVQFATLDALSQELGTQVCYLLGG-K---------RDEIETDKTVG 136 (345)
T ss_dssp BGGGHHHHHH---------HHT--TCTTSHHHHHHHHHHHHHHHHHHHTSCHHHHTTC-C---------CSEEEBCEEEC
T ss_pred ChhhHHHHHH---------HHH--HhccchHHHHHHHHHHHHHHHHHcCCcHHHHhCC-C---------CCceeeeEEec
Confidence 9887654442 110 1123578999999999999999999999999999 4 47899998874
Q ss_pred CCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCc-
Q 041113 652 SNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQ- 730 (983)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~- 730 (983)
..+++++.+.+++++++||++||+|+|. ++++|+++|++||++ |+++.|++|+|++|+.++|+++++.|+++++.
T Consensus 137 -~~~~~~~~~~a~~~~~~Gf~~iKik~g~--~~~~d~~~v~avr~~-g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~ 212 (345)
T 2zad_A 137 -IDTVENRVKEAKKIFEEGFRVIKIKVGE--NLKEDIEAVEEIAKV-TRGAKYIVDANMGYTQKEAVEFARAVYQKGIDI 212 (345)
T ss_dssp -SCCHHHHHHHHHHHHHTTCSEEEEECCS--CHHHHHHHHHHHHHH-STTCEEEEECTTCSCHHHHHHHHHHHHHTTCCC
T ss_pred -CCCHHHHHHHHHHHHHcCcCEEEEeecC--CHHHHHHHHHHHHhh-CCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCe
Confidence 4689999999999999999999999996 789999999999999 99999999999999999999999999999999
Q ss_pred -eeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCC
Q 041113 731 -YIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGK 806 (983)
Q Consensus 731 -~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi 806 (983)
|||||++ +++.+++|++++++||++||++.+..+ +..+++. .+|++++|+++ ||++++++++++|+++|+
T Consensus 213 ~~iE~P~~~~~~~~~~~l~~~~~ipia~dE~~~~~~~-----~~~~i~~~~~d~v~ik~~~-GGit~~~~i~~~A~~~g~ 286 (345)
T 2zad_A 213 AVYEQPVRREDIEGLKFVRFHSPFPVAADESARTKFD-----VMRLVKEEAVDYVNIKLMK-SGISDALAIVEIAESSGL 286 (345)
T ss_dssp SEEECCSCTTCHHHHHHHHHHSSSCEEESTTCCSHHH-----HHHHHHHTCCSEEEECHHH-HHHHHHHHHHHHHHTTTC
T ss_pred eeeeCCCCcccHHHHHHHHHhCCCCEEEeCCcCCHHH-----HHHHHHhCCCCEEEEeccc-ccHHHHHHHHHHHHHcCC
Confidence 9999998 788899999999999999999998653 5555544 47999999999 999999999999999999
Q ss_pred cEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceee
Q 041113 807 MAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISIC 871 (983)
Q Consensus 807 ~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~ 871 (983)
++++||++||+|++++++|++++++|+. .+.+++..++.+|++.+|+.++
T Consensus 287 ~~~~~~~~es~i~~aa~~hlaa~~~~~~---------------~~e~~~~~~~~~d~~~~~~~~~ 336 (345)
T 2zad_A 287 KLMIGCMGESSLGINQSVHFALGTGAFE---------------FHDLDSHLMLKEEVFRGKFIQD 336 (345)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHHCCCS---------------EECCCGGGGBSSCCCCCSSEEE
T ss_pred eEEEecCcccHHHHHHHHHHHHcCCCCc---------------eeecCCchhhhhccccCCcEEE
Confidence 9999999999999999999999998631 1224455567788888888776
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-54 Score=488.40 Aligned_cols=352 Identities=15% Similarity=0.145 Sum_probs=287.8
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAK 572 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~ 572 (983)
|||++|+++.+. |+..|+.++. .++.++|+|+|++|++||||+.+.++..+ .+...++.++|.|+|++
T Consensus 11 MkI~~i~~~~~~-p~~~~~~~~~--------~~~~~~V~v~td~G~~G~GE~~~~~~~~~---~~~~~i~~l~p~l~G~d 78 (391)
T 2qgy_A 11 GKLSRLKIWITD-NHLSDDQWSN--------TKKFIIIKITTEDGIEGWGEAFSINFREK---GIAIIIKELFREISNIP 78 (391)
T ss_dssp CCEEEEEEEEEC-CCBCGGGCSB--------CCCCEEEEEEETTCCEEEEEECCCTTTHH---HHHHHHHHHHHHHTTCT
T ss_pred CEEEEEEEEEec-CccccccccC--------CCcEEEEEEEECCCCEEEecccCCCCChH---HHHHHHHHHHHHhcCCC
Confidence 899999999994 6555544332 25679999999999999999987643333 34456667999999999
Q ss_pred ccccccccccCchhhhhh-hcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEE--e
Q 041113 573 ISYFLPLLKGSFSSWIWS-TLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA--L 649 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~--~ 649 (983)
+.++..++..+ .. .......+. ++|++|||+||||+.||.+|+|||+||||.. +++||+|+ +
T Consensus 79 ~~~~~~i~~~l-----~~~~~~~~g~~~-~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~---------~~~vp~~~~g~ 143 (391)
T 2qgy_A 79 NLSIKSFYNKI-----SLLSDGHRGLDF-SSATSAIEIALWDISGKLKNLPLNSLLTKSP---------KPNVPIYATCW 143 (391)
T ss_dssp TCCHHHHHHHH-----HHHHTTCCCHHH-HHHHHHHHHHHHHHHHHHHTSBHHHHHCSSC---------CSEEEEEEECC
T ss_pred hhHHHHHHHHH-----HhhhhhccCchH-HHHHHHHHHHHHHHHHHHhCCcHHHHcCCCc---------CCCcceEEecc
Confidence 88765554321 11 111111123 7899999999999999999999999999975 47899997 4
Q ss_pred ecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCC-hHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCC
Q 041113 650 IDSNKSPVEVASIATTLVEEGFTAIKLKVARRAD-PIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD 728 (983)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~-~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~ 728 (983)
+....+++++.+.+++++++||++||+|+|. + ++.|+++|++||+++|+++.|++|+|++|++++|+++++.|++++
T Consensus 144 ~~~~~~~~~~~~~a~~~~~~Gf~~vKik~g~--~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~ 221 (391)
T 2qgy_A 144 SDLKKDTNDYLRQIEKFYGKKYGGIKIYPML--DSLSISIQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFN 221 (391)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTCSCEEECCCC--SSHHHHHHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGC
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCEEEEccCC--ChHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 4224689999999999999999999999986 5 789999999999999999999999999999999999999999999
Q ss_pred CceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcC
Q 041113 729 LQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHG 805 (983)
Q Consensus 729 i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~g 805 (983)
+.|||||++ +++.+++|++++++||++||++.+.. .+..+++. .+|++++|++++||++++++++++|+++|
T Consensus 222 i~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~-----~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g 296 (391)
T 2qgy_A 222 PYWIEEPVDGENISLLTEIKNTFNMKVVTGEKQSGLV-----HFRELISRNAADIFNPDISGMGGLIDIIEISNEASNNG 296 (391)
T ss_dssp CSEEECSSCTTCHHHHHHHHHHCSSCEEECTTCCSHH-----HHHHHHHTTCCSEECCBTTTSSCHHHHHHHHHHHHHTT
T ss_pred CCeEeCCCChhhHHHHHHHHhhCCCCEEEcCCcCCHH-----HHHHHHHcCCCCEEEECcchhCCHHHHHHHHHHHHHCC
Confidence 999999998 78899999999999999999999865 36666654 47999999999999999999999999999
Q ss_pred CcEEeCCCCch-HHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeee
Q 041113 806 KMAVVSAAFES-GLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVE 880 (983)
Q Consensus 806 i~~~~~~~~es-~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlG 880 (983)
+++++|++ ++ +|++++++|++++++|+.. ..+..+...| ..|++.+|+.+++ +|++||||
T Consensus 297 i~~~~~~~-~~~~i~~aa~~hlaaa~~~~~~-------------~e~~~~~~~~-~~d~~~~~~~~~~G~~~~p~~PGlG 361 (391)
T 2qgy_A 297 IFISPHCW-NSMSVSASAMLHVCSSIPNSEK-------------AEIFPDYINF-SKKFCELPFDIIDNKAHINKSAGLG 361 (391)
T ss_dssp CEECCBCC-SCTTHHHHHHHHHHHHCTTBCC-------------EEECGGGHHH-HHTTBCCSEEEETTEEEECCSSBTC
T ss_pred CEEeccCC-CCcHHHHHHHHHHHHhCCCCce-------------EeecCccchh-hHHHhcCCceeeCCEEECCCCCcCC
Confidence 99988886 88 9999999999999986410 0111111223 3788888888874 89999999
Q ss_pred EEecchhhhhhhccc
Q 041113 881 ASVAKATHILQNLQI 895 (983)
Q Consensus 881 v~~d~a~~~~~~~~~ 895 (983)
+++| ++.++++.+
T Consensus 362 v~~d--~~~l~~~~~ 374 (391)
T 2qgy_A 362 IVIH--EDILSELSI 374 (391)
T ss_dssp CCBC--HHHHHHTEE
T ss_pred ccCC--HHHHHhccC
Confidence 9999 888777664
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-54 Score=487.64 Aligned_cols=357 Identities=17% Similarity=0.152 Sum_probs=296.0
Q ss_pred eeEeEEEEEEEEeeCCC--------------------CCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcc
Q 041113 493 CKICRMEYSLYRIQLCA--------------------PPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKE 552 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~--------------------p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~ 552 (983)
|||++|+++.+++|++. ||.++.+.. ..+ .++|+|+|++|++||||+.+.. .+
T Consensus 3 mkI~~i~~~~~~~pl~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~----~~~-~~~V~v~td~G~~G~GE~~~~~--~~ 75 (388)
T 2nql_A 3 SPIATVEVFTLTQPRKVPYLGALREGEVVNPNGYIVRKGNRTVYPT----FDR-SVLVRMTTEAGTVGWGETYGIV--AP 75 (388)
T ss_dssp CCEEEEEEEEEEECCCSCCGGGCCSCCCCBGGGEEECTTTCCEEES----SEE-EEEEEEEETTCCEEEEEEECSS--CH
T ss_pred ceEeEEEEEEEeccCcccccccccccccccccccccCCccccccCc----cce-EEEEEEEECCCCEEEEEecCCC--Cc
Confidence 79999999999999999 999887654 347 9999999999999999998763 33
Q ss_pred cHHHHHHHHH-HHHhHhccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCC
Q 041113 553 NLLDAEEQLR-FLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLT 631 (983)
Q Consensus 553 ~~~~~~~~l~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~ 631 (983)
+ .+...++ .++|.|+|+++.++..++..++.. ........+..++|++|||+||||++||.+|+|||+||||.+
T Consensus 76 ~--~~~~~i~~~l~~~l~G~d~~~~~~i~~~l~~~---~~~~~~~~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~ 150 (388)
T 2nql_A 76 G--AVAALINDLLAGFVIGRDASDPSAVYDDLYDM---MRVRGYTGGFYVDALAALDIALWDIAGQEAGKSIRDLLGGGV 150 (388)
T ss_dssp H--HHHHHHHHTHHHHHTTCCSSSHHHHHHHHHHH---HGGGTCSSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCC
T ss_pred H--HHHHHHHHHHHHHhcCCCcccHHHHHHHHHhh---cccccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC
Confidence 2 3455666 489999999988765554322110 111111123367899999999999999999999999999974
Q ss_pred ccccccccccceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 041113 632 EIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRN 711 (983)
Q Consensus 632 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~ 711 (983)
++||+|++++...+++++.+.+++++++||++||+|+|. .+++. +++|++||+++|+++.|++|+|++
T Consensus 151 ----------~~vp~~~~~g~~~~~e~~~~~a~~~~~~Gf~~vKik~g~-~~~~~-~e~v~avr~a~g~d~~l~vDan~~ 218 (388)
T 2nql_A 151 ----------DSFPAYVSGLPERTLKARGELAKYWQDRGFNAFKFATPV-ADDGP-AAEIANLRQVLGPQAKIAADMHWN 218 (388)
T ss_dssp ----------SEEEEEEECCCCSSHHHHHHHHHHHHHTTCCEEEEEGGG-CTTCH-HHHHHHHHHHHCTTSEEEEECCSC
T ss_pred ----------CceEeeEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC-CChHH-HHHHHHHHHHhCCCCEEEEECCCC
Confidence 679999876434689999999999999999999999996 25778 999999999999999999999999
Q ss_pred CCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCc
Q 041113 712 WTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVI 788 (983)
Q Consensus 712 ~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~ 788 (983)
|+.++|+++++.|+++++.|||||++ +++.++++++++++||++||++.+.. .+..+++.+ +|++++|+++
T Consensus 219 ~~~~~a~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~iPI~~dE~~~~~~-----~~~~~i~~~~~d~v~ik~~~- 292 (388)
T 2nql_A 219 QTPERALELIAEMQPFDPWFAEAPVWTEDIAGLEKVSKNTDVPIAVGEEWRTHW-----DMRARIERCRIAIVQPEMGH- 292 (388)
T ss_dssp SCHHHHHHHHHHHGGGCCSCEECCSCTTCHHHHHHHHTSCCSCEEECTTCCSHH-----HHHHHHTTSCCSEECCCHHH-
T ss_pred CCHHHHHHHHHHHhhcCCCEEECCCChhhHHHHHHHHhhCCCCEEEeCCcCCHH-----HHHHHHHcCCCCEEEecCCC-
Confidence 99999999999999999999999998 78899999999999999999999865 366666654 7999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCc
Q 041113 789 GGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPI 868 (983)
Q Consensus 789 GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~ 868 (983)
||++++++++++|+++|+++++|+++||+|++++++|++++++|. ++ +..++++. + +.+|++.+|+
T Consensus 293 GGit~~~~i~~~A~~~g~~~~~h~~~es~i~~aa~~hlaa~~~~~---~~---------e~~~d~~~-~-~~~d~~~~~~ 358 (388)
T 2nql_A 293 KGITNFIRIGALAAEHGIDVIPHATVGAGIFLAASLQASSTLSML---KG---------HEFQHSIF-E-PNRRLLDGDM 358 (388)
T ss_dssp HCHHHHHHHHHHHHHHTCEECCCCCSSCSHHHHHHHHHHTTCTTB---CC---------EEECHHHH-T-GGGGGEESCC
T ss_pred CCHHHHHHHHHHHHHcCCeEEeecCCCcHHHHHHHHHHHHhCCch---hh---------hccccccc-h-HHHHhccCCC
Confidence 999999999999999999999988999999999999999999852 10 00111112 2 4677777888
Q ss_pred eeec----cCCCCeeeEEecchhhhhhhccc
Q 041113 869 SICH----NSCRGFVEASVAKATHILQNLQI 895 (983)
Q Consensus 869 ~~~~----~P~~pGlGv~~d~a~~~~~~~~~ 895 (983)
.+++ +|++||||+++| ++.++++..
T Consensus 359 ~~~~G~~~~p~~PGlGv~~d--~~~l~~~~~ 387 (388)
T 2nql_A 359 DCREGRYHLPSGPGLGVRPS--EAALGLIER 387 (388)
T ss_dssp EEETTEEECCCSSBTSCEEC--HHHHHHCEE
T ss_pred cccCCEEECCCCCCCCceEC--HHHHHhhhc
Confidence 8874 899999999999 788777653
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-54 Score=482.81 Aligned_cols=349 Identities=15% Similarity=0.097 Sum_probs=288.7
Q ss_pred ccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHH-HHHhHh
Q 041113 490 LSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLR-FLLHFM 568 (983)
Q Consensus 490 ~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~-~~~~~l 568 (983)
|++|||++|+++.+++|++.||.++.+.+ +.++.++|+|+|++|++||||+.+.+ .++. .+...++ .+.|.|
T Consensus 1 ~~~mkI~~i~~~~~~~pl~~p~~~~~~~~----~~~~~~~v~v~td~G~~G~Ge~~~~~--~~~~-~~~~~i~~~l~~~l 73 (359)
T 1mdl_A 1 MSEVLITGLRTRAVNVPLAYPVHTAVGTV----GTAPLVLIDLATSAGVVGHSYLFAYT--PVAL-KSLKQLLDDMAAMI 73 (359)
T ss_dssp --CCBEEEEEEEEEEEEEEEEEECSSCEE----EEEEEEEEEEEETTSCEEEEEEECSS--GGGH-HHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEEEEcCCCCCcccccccc----ccccEEEEEEEeCCCCEEEEEeecCC--CchH-HHHHHHHHHHHHHH
Confidence 44589999999999999999999887653 34889999999999999999998764 3333 4455565 588999
Q ss_pred ccCcccccccccccCchhhhhhhc-CCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTL-GIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKIC 647 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~ 647 (983)
+|+++.++..+ ..+ +... .....+..++|++|||+||||+.||.+|+|||+||||.+ ++||+|
T Consensus 74 ~g~d~~~~~~~-~~l-----~~~~~~~~~~~~~~~a~~aid~Al~Dl~~k~~g~Pl~~llGg~~----------~~vp~~ 137 (359)
T 1mdl_A 74 VNEPLAPVSLE-AML-----AKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANA----------RPVQAY 137 (359)
T ss_dssp TTSBSCHHHHH-HHH-----HHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTCCC----------CCEEEE
T ss_pred CCCCccchHHH-HHH-----HHHHHhhccCchHHHHHHHHHHHHHHHhhhhcCCcHHHHhCCCC----------CCeeee
Confidence 99998775544 211 1111 111123467899999999999999999999999999974 579999
Q ss_pred EeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccC
Q 041113 648 ALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727 (983)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~ 727 (983)
+++ +..+++++.+.+++++++||++||+|+|. .+++.|+++|++||+++|+++.|++|+|++|+.++|+++++.|+++
T Consensus 138 ~~~-g~~~~~~~~~~a~~~~~~Gf~~iKik~g~-~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~ 215 (359)
T 1mdl_A 138 DSH-SLDGVKLATERAVTAAELGFRAVKTRIGY-PALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQE 215 (359)
T ss_dssp EEC-CSCHHHHHHHHHHHHHHTTCSEEEEECCC-SSHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHH
T ss_pred eec-CCCCHHHHHHHHHHHHHcCCCEEEEecCC-CCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 874 34688999999999999999999999996 3789999999999999999999999999999999999999999999
Q ss_pred CCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHc
Q 041113 728 DLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRH 804 (983)
Q Consensus 728 ~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~ 804 (983)
++.|||||++ +++.++++++++++||++||++.+.. .+..+++. .+|++++|++++||++++++++++|+++
T Consensus 216 ~i~~iE~P~~~~~~~~~~~l~~~~~iPI~~de~~~~~~-----~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~ 290 (359)
T 1mdl_A 216 GVTWIEEPTLQHDYEGHQRIQSKLNVPVQMGENWLGPE-----EMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQF 290 (359)
T ss_dssp TCSCEECCSCTTCHHHHHHHHHTCSSCEEECTTCCSHH-----HHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHHHHT
T ss_pred CCCeEECCCChhhHHHHHHHHHhCCCCEEeCCCCCCHH-----HHHHHHHcCCCCEEeecchhhCCHHHHHHHHHHHHHc
Confidence 9999999998 78899999999999999999999865 35555544 5799999999999999999999999999
Q ss_pred CCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeee
Q 041113 805 GKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVE 880 (983)
Q Consensus 805 gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlG 880 (983)
|+++++|+ +++ +++|++++++|+. . +++. + +..|++.+|+.+++ +|++||||
T Consensus 291 g~~~~~~~-~~~-----a~~~laaa~~~~~--~-------------~e~~--~-~~~d~~~~~~~~~~G~~~~p~~pGlG 346 (359)
T 1mdl_A 291 GIPMSSHL-FQE-----ISAHLLAATPTAH--W-------------LERL--D-LAGSVIEPTLTFEGGNAVIPDLPGVG 346 (359)
T ss_dssp TCCBCCBS-CHH-----HHHHHHHTCTTBC--C-------------EEEC--C-SSTTTBCCCSEEETTEEECCSSSBTC
T ss_pred CCeEeecc-HHH-----HHHHHHHhCCCCc--c-------------cccC--c-hhhhhccCCceeECCEEECCCCCCCC
Confidence 99988775 443 8999999998631 0 1111 2 36677778888874 89999999
Q ss_pred EEecchhhhhhhcc
Q 041113 881 ASVAKATHILQNLQ 894 (983)
Q Consensus 881 v~~d~a~~~~~~~~ 894 (983)
+++| ++.++++.
T Consensus 347 v~~d--~~~l~~~~ 358 (359)
T 1mdl_A 347 IIWR--EKEIGKYL 358 (359)
T ss_dssp CCBC--HHHHHHHB
T ss_pred ccCC--HHHHHhcc
Confidence 9999 77777664
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-54 Score=486.61 Aligned_cols=346 Identities=18% Similarity=0.205 Sum_probs=269.5
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHH-HHHHhHhcc
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQL-RFLLHFMTG 570 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l-~~~~~~l~g 570 (983)
.|||++|+++.. +..++|||+||+|++||||+.+.. .+. +...+ +.+.|.|+|
T Consensus 22 ~mkIt~v~~~~~---------------------~~~~~V~v~Td~G~~G~GE~~~~~--~~~---~~~~i~~~l~p~LiG 75 (388)
T 3tcs_A 22 SMKLKAIETFTN---------------------DAVGFVRVTTQDGAQGWGQVSTYH--ADI---TCTVLHRQVAPWMLG 75 (388)
T ss_dssp -CBEEEEEEEEC---------------------SSCEEEEEEETTSCEEEEECCSSS--HHH---HHHHHHHHTHHHHTT
T ss_pred ccEEEEEEEEEe---------------------CCeEEEEEEECCCCEEEEeccCCc--cHH---HHHHHHHHHHHHhCC
Confidence 379999996542 124699999999999999987532 222 22233 468999999
Q ss_pred CcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEee
Q 041113 571 AKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALI 650 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~ 650 (983)
+++.+++.++..+.. ..... ......+|++|||+|||||+||.+|+|||+||||.+ ++|++|++.
T Consensus 76 ~d~~~~e~l~~~~~~----~~~~~-~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGg~~----------~~v~~y~s~ 140 (388)
T 3tcs_A 76 QDITDLDDLLDIVTE----REHKF-PGSYLRRAMAGVDTAIWDLRGKQQGKPVAEVLGGTP----------GLIRAYASS 140 (388)
T ss_dssp SBCTTHHHHHHHHHH----HTTTC-CBHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCC----------EEEEEEEEC
T ss_pred CCcccHHHHHHHHHH----hhhcc-CCcHHHHHHHHHHHHHHHHHHhHcCCcHHHHhCCCC----------CceEEEEec
Confidence 999987776643221 11111 122345799999999999999999999999999975 579999875
Q ss_pred cC-CCCHHHHHHHHHHh-hhcCCCEEEEeccCCC------ChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHh
Q 041113 651 DS-NKSPVEVASIATTL-VEEGFTAIKLKVARRA------DPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722 (983)
Q Consensus 651 ~~-~~~~~~~~~~~~~~-~~~G~~~~KiKig~~~------~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~ 722 (983)
.. ..++++..+++.+. +++||++||+|+|... .+++|++++++||+++|+++.|++|+|++|++++|+++++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~Gf~~~K~KvG~~~~~d~~~~~~~~~~~v~avReavG~d~~l~vDaN~~~~~~~A~~~~~ 220 (388)
T 3tcs_A 141 MKRDITPRDEAERLKRLRDTQGFTAFKVRAGAEVGRNRDEWPGRTEEIIPTMRRELGDDVDLLIDANSCYTPDRAIEVGH 220 (388)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHCCCEEEEECSCTTCTTCCSSTTHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHH
T ss_pred CcCCCChHHHHHHHHHHHHhcCCCEEEEccCCCcccccccchhHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHH
Confidence 32 24677777776665 4789999999999631 1456899999999999999999999999999999999999
Q ss_pred hcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHH
Q 041113 723 LIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIAR 799 (983)
Q Consensus 723 ~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~ 799 (983)
.|+++++.|||||++ +++++++|++++++||++||++++..+ +..+++ ..+|++|+|++++|||++++++++
T Consensus 221 ~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~i~~~a~d~v~~d~~~~GGit~a~kia~ 295 (388)
T 3tcs_A 221 MLQDHGFCHFEEPCPYWELAQTKQVTDALDIDVTGGEQDCDLPT-----WQRMIDMRAVDIVQPDILYLGGICRTLRVVE 295 (388)
T ss_dssp HHHHTTCCEEECCSCTTCHHHHHHHHHHCSSCEEECTTCCCHHH-----HHHHHHHTCCSEECCCHHHHTSHHHHHHHHH
T ss_pred HHhhcCCeEEECCCCccCHHHHHHHHHhcCCCEEcCCccCCHHH-----HHHHHHcCCCCEEEeCccccCCHHHHHHHHH
Confidence 999999999999998 789999999999999999999998753 555555 457999999999999999999999
Q ss_pred HHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCC-CCCceeec----cC
Q 041113 800 WAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVT-TDPISICH----NS 874 (983)
Q Consensus 800 ~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~-~~p~~~~~----~P 874 (983)
+|+++|++++.|+ +.++++.++++|+++++||... +.++... +.+.+.|. .|++ .+|+.+++ +|
T Consensus 296 ~A~~~gv~~~~h~-~~~~~~~~a~~hl~aa~pn~~~----~~e~~~~-----~~~~~~~~-~~~~~~~p~~~~~G~i~vp 364 (388)
T 3tcs_A 296 MARAAGLPVTPHC-ANWSLVTLFTMHLLRAIPNAGK----YLEFSIE-----GPDYYPWQ-EGLFVKTPYEIEDGHARVT 364 (388)
T ss_dssp HHHHTTCCBCCCC-CSTTTHHHHHHHHHTTCTTBCS----CEEEECC-----CTTTCGGG-TTCBSSCSCCCBTTEEEEC
T ss_pred HHHHcCCEEEecC-CCcHHHHHHHHHHHHhCCCccc----eeEeecC-----cccccchh-hhhccCCCceeeCCEEECC
Confidence 9999999977555 5677888899999999996411 1111110 11112333 3554 67787774 99
Q ss_pred CCCeeeEEecchhhhhhhcccc
Q 041113 875 CRGFVEASVAKATHILQNLQIN 896 (983)
Q Consensus 875 ~~pGlGv~~d~a~~~~~~~~~~ 896 (983)
++|||||++| ++.++++...
T Consensus 365 ~~PGLGveld--~~~l~~~~~~ 384 (388)
T 3tcs_A 365 DAPGWGVEIS--PEWLARSQYQ 384 (388)
T ss_dssp SSSBTCCCBC--HHHHHHSEEE
T ss_pred CCCCCCCeEC--HHHHHhCccc
Confidence 9999999999 8888776543
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-54 Score=486.62 Aligned_cols=342 Identities=23% Similarity=0.295 Sum_probs=275.9
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHHHHHhHhccC
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLRFLLHFMTGA 571 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~~~~~~l~g~ 571 (983)
||| +|+++.+++||+.||.++.+.+ ..++.++|+| |++|++||||+.+.+ +++++...+...++.++|.++|+
T Consensus 3 ~~m-~i~~~~~~~pl~~p~~~s~~~~----~~~~~v~V~v-td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~~~~~l~g~ 76 (377)
T 2pge_A 3 SGM-ELSYRRSDLIFKRPAGTSRGVL----TSKPTWFVRL-DIDGHGGQGEVSLIPGLSLDPEEQIGRELDLLARRLRAE 76 (377)
T ss_dssp CCC-EEEEEECCEEBCC-------CC----CEECEEEEEE-EETTEEEEEEEECCTTTCSSCHHHHHHHHHHHHHHHHHS
T ss_pred cce-EEEEEEEeecccCcceeccEEE----eecceEEEEE-EcCCCEEEEEeccCCCCCcCCHHHHHHHHHHHHHHHhCC
Confidence 577 8999999999999999998765 3489999999 899999999999875 44577777777888899999999
Q ss_pred cccccccccccCc---hhhhhhh----------cCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccc
Q 041113 572 KISYFLPLLKGSF---SSWIWST----------LGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEIS 638 (983)
Q Consensus 572 ~~~~~~~~~~~~~---~~~~~~~----------~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~ 638 (983)
++.+...++.... .+.+++. .........++|++|||+||||+.||..|+|||+||||.+
T Consensus 77 d~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~aid~Al~Dl~ak~~g~Pl~~llGg~~------- 149 (377)
T 2pge_A 77 EPIRLRQFLAERGGADFSDYRSVLTDIAGILDSWQVSTDGRFPALRFALEMALLDLLSGGRQEWFASDFTRGE------- 149 (377)
T ss_dssp CCHHHHHHHHHTSSCTTSCHHHHHHHHHHHHHHTTSSTTSSCHHHHHHHHHHHHHHHHTSSSCSSCSTTTTTS-------
T ss_pred CccchhhhhhccccccHHHHHHhhhhhhhhhhhcccccccccHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCC-------
Confidence 8743211111000 0111100 0001123467899999999999999999999999999874
Q ss_pred cccceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcC-CCcEEEEEcCCCCCHHHH
Q 041113 639 KRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVG-HRIELRVDANRNWTYQEA 717 (983)
Q Consensus 639 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g-~~~~l~vDaN~~~~~~~a 717 (983)
++||+|++++ ..+++++.+++++++++||++||+|+|. .++++|+++|+++|+++| +++.|++|+|++|++++|
T Consensus 150 ---~~vp~~~~i~-~~~~e~~~~~a~~~~~~G~~~~K~Kvg~-~~~~~d~~~v~avr~~~g~~~~~l~vDaN~~~~~~~a 224 (377)
T 2pge_A 150 ---KRIPVNGLIW-MGEAAFMQEQIEAKLAEGYGCLKLKIGA-IDFDKECALLAGIRESFSPQQLEIRVDANGAFSPANA 224 (377)
T ss_dssp ---CCEEBCEEEC-CCCHHHHHHHHHHHHHTTCSEEEEEC----CHHHHHHHHHHHHHHSCTTTCEEEEECTTBBCTTTH
T ss_pred ---CeEEEeEEec-CCCHHHHHHHHHHHHHHhhhhheeecCC-CChHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHH
Confidence 5789998874 4689999999999999999999999996 378999999999999999 999999999999999999
Q ss_pred HHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHH
Q 041113 718 LEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENA 794 (983)
Q Consensus 718 ~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~ 794 (983)
+++++.|+++++.|||||++ |++++++|++++++||++||++.+..+ . .+..+++ ..+|++++|++++||++++
T Consensus 225 ~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~-~--~~~~~i~~~a~d~i~ik~~~~GGit~~ 301 (377)
T 2pge_A 225 PQRLKRLSQFHLHSIEQPIRQHQWSEMAALCANSPLAIALDEELIGLGA-E--QRSAMLDAIRPQYIILKPSLLGGFHYA 301 (377)
T ss_dssp HHHHHHHHTTCCSEEECCBCSSCHHHHHHHHHHCSSCEEESGGGTTCCT-H--HHHHHHHHHCCSEEEECHHHHTSHHHH
T ss_pred HHHHHHHhcCCCcEEEccCCcccHHHHHHHHhhCCCcEEECCccCCcch-H--HHHHHHHhCCCCEEEECchhcCCHHHH
Confidence 99999999999999999998 899999999999999999999999874 1 1334443 4579999999999999999
Q ss_pred HHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceee
Q 041113 795 GLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISIC 871 (983)
Q Consensus 795 ~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~ 871 (983)
++++++|+++|+++++||++||++++++++|++++++|. ..+++++..++.+|++ +|+.++
T Consensus 302 ~~i~~~A~~~g~~~~~~~~~es~i~~~a~~hlaa~~~~~---------------~~~~l~~~~~~~~d~~-~~~~~~ 362 (377)
T 2pge_A 302 GQWIELARERGIGFWITSALESNLGLAAIAQWTALYQPT---------------MPQGLGTGQLYTNNLP-SNLAVD 362 (377)
T ss_dssp HHHHHHHHHTTCEEEEBCCSCCHHHHHHHHHHHHTTCCS---------------SCBBCSCCCCBSSCCC-CCCEEC
T ss_pred HHHHHHHHHCCCeEEecCCcccHHHHHHHHHHHHCCCCC---------------ccccCCchhhhHhhcc-CCceee
Confidence 999999999999999999999999999999999998852 2344566667788886 677776
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-54 Score=515.23 Aligned_cols=394 Identities=13% Similarity=0.123 Sum_probs=313.2
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.+++|++.|.++ +|||||+||+|++..+...... ..+... . .+...++++.+++++
T Consensus 136 ~~~~~i~~A~~~A~~~-~GPV~l~iP~dv~~~~~~~~~~-------------~~~~~~--~----~~~~~~~~~~i~~~~ 195 (549)
T 3eya_A 136 QIPQVLAIAMRKAVLN-RGVSVVVLPGDVALKPAPEGAT-------------MHWYHA--P----QPVVTPEEEELRKLA 195 (549)
T ss_dssp GHHHHHHHHHHHHHHT-TSEEEEEEEHHHHTSBCCTTCC-------------CCCCCC--C----CCEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhC-CCCEEEEeChhHhhcccCcccc-------------cccccc--C----CCCCCCCHHHHHHHH
Confidence 3688999999999994 6999999999976544321000 000000 0 012245677899999
Q ss_pred HHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 81 ELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
++|++||||+|++|+|+. ++.+++.+|||++|+||++|++ | ||+||++||++ +|++|..+...++..+++
T Consensus 196 ~~l~~A~rpvIl~G~g~~-~a~~~l~~lae~~~~Pv~~t~~-g------kg~~~~~hp~~--~G~~G~~~~~~~~~~~~~ 265 (549)
T 3eya_A 196 QLLRYSSNIALMCGSGCA-GAHKELVEFAGKIKAPIVHALR-G------KEHVEYDNPYD--VGMTGLIGFSSGFHTMMN 265 (549)
T ss_dssp HHHHTCCSEEEEECGGGT-TCHHHHHHHHHHHTCCEEECGG-G------HHHHSSSCTTB--CCCCSTTSCHHHHHHHHH
T ss_pred HHHHhCCCcEEEECCCch-HHHHHHHHHHHHhCCCEEECCc-c------CcCCCCCCccc--ccCCCCCCCHHHHHHHHh
Confidence 999999999999999874 4567999999999999999998 6 89999999996 788887777667778899
Q ss_pred CCEEEEeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 239 (983)
||+||++|++++.. ..++ ..++||||.|+.+++++++.++.+.+|++.++++|.+.+.......|.+.+.+..
T Consensus 266 aDlvl~iG~~~~~~------~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 339 (549)
T 3eya_A 266 ADTLVLLGTQFPYR------AFYPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVEEKADRKFLDKALEDY 339 (549)
T ss_dssp CSEEEEESCCCCCG------GGSCSSSEEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHGGGSCCCCCCHHHHHHHHHH
T ss_pred CCEEEEECCCCCcc------ccCCCCCeEEEEeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHhccccCcHHHHHHHHHHH
Confidence 99999999998632 1233 3479999999999999999999999999999999999886655667888776665
Q ss_pred HHHHHHHHhhh-cccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEee
Q 041113 240 MMVASEISFQI-CADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAG 318 (983)
Q Consensus 240 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 318 (983)
+.+........ ..+.++++..+++.|++.++++++++.|+|+ +.+|..+++.+ +.|++|+. ++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~----~~~~~~~~~~~-~~~~~~~~-----------~~ 403 (549)
T 3eya_A 340 RDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVGT----PTVWAARYLKM-NGKRRLLG-----------SF 403 (549)
T ss_dssp HHHHHHHHHTSCCCSSCBCHHHHHHHHHHHSCTTCEEEECTTH----HHHHHHHHCCC-CSSCEEEC-----------CT
T ss_pred HHHHHHHhhhcCCCCCCcCHHHHHHHHHhhCCCCCEEEEcCcH----HHHHHHHhCcc-CCCCcEEe-----------CC
Confidence 55544333222 2246799999999999999999999999999 55555444443 44554442 47
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
++|+||+ ++|+|+|+++|. +++||+++|||||+|++|||+|+++ +++|+++||+||++|++++..+.. ..
T Consensus 404 ~~g~mG~--~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~--~~l~~~ivv~nN~~~g~~~~~~~~-----~~ 474 (549)
T 3eya_A 404 NHGSMAN--AMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQ--MKLPVKIVVFNNSVLGFVAMEMKA-----GG 474 (549)
T ss_dssp TTCCTTC--HHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHHHHHH--TTCCCEEEEEECSBCCCC-------------
T ss_pred CCchhhh--HHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHH--hCCCeEEEEEeCCccHHHHHHHHh-----cC
Confidence 8899999 999999999999 9999999999999999999999999 999999999999999998754211 11
Q ss_pred cccccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 398 LDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 398 ~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
+...+.+.+++||.++|++||+++++|++.+||+++|+++++.+||+||||.++++++
T Consensus 475 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~~~~ 532 (549)
T 3eya_A 475 YLTDGTELHDTNFARIAEACGITGIRVEKASEVDEALQRAFSIDGPVLVDVVVAKEEL 532 (549)
T ss_dssp ----CCBCCCCCHHHHHHHTTSEEEEECSGGGHHHHHHHHHHSSSCEEEEEEBCCCCS
T ss_pred CCCcCCcCCCCCHHHHHHHcCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeccccc
Confidence 2233444567999999999999999999999999999999999999999999998764
|
| >4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-53 Score=492.26 Aligned_cols=361 Identities=16% Similarity=0.182 Sum_probs=279.8
Q ss_pred CccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHh
Q 041113 489 SLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFM 568 (983)
Q Consensus 489 ~~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l 568 (983)
+|+..||++++++++... ..|..+..|.+ +.+ ....||+|+||+|++||||+... + .+.+.++.+.|.|
T Consensus 22 ~~~~p~i~~~~v~pva~~-d~~l~~~~g~h--~p~-f~RtiV~v~Td~Gi~G~GE~~g~----~---~~~~~le~~~p~l 90 (464)
T 4g8t_A 22 SMSTPIITEMQVIPVAGH-DSMLLNLSGAH--SPY-FTRNIVILKDNSGNTGVGEVPGG----E---KIRQTLEDAKPLV 90 (464)
T ss_dssp --CCCBEEEEEEEEEEEE-CCCBEETTEEC--CSE-EEEEEEEEEETTSCEEEEEEECC----H---HHHHHHHHHGGGT
T ss_pred ccCCCEEeEEEEEEecCC-CcccccCCccc--CCc-cceEEEEEEECCCCEEEEeCCCc----H---HHHHHHHHHHHHH
Confidence 466669999999998753 34555555443 112 33458999999999999998532 2 2344567789999
Q ss_pred ccCcccccccccccCchhhhhhh---cCC--CCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcC-CCCccccccccccc
Q 041113 569 TGAKISYFLPLLKGSFSSWIWST---LGI--PACEIFPSVRCGLEMAILNAIAVKHGSSFLNILY-PLTEIDEEISKRST 642 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLG-g~~~~~~~~~~~~~ 642 (983)
+|+++.+++.++..+........ .+. ........|+||||+|||||+||.+|+|||+||| |+. ++
T Consensus 91 iG~dp~~ie~i~~~l~~~~~~~~~~g~g~~~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGgG~~---------Rd 161 (464)
T 4g8t_A 91 IGKTLGEYKNVMNTVRQTFNDHDAGGRGLQTFDLRTTIHVVTAIEAAMLDLLGQFLGVTVASLLGDGQQ---------RD 161 (464)
T ss_dssp TTCBGGGHHHHHHHHHHHTTTSCTTTTCSSSSCCCSHHHHHHHHHHHHHHHHHHHHTSBTGGGSTTSCC---------CS
T ss_pred cCCCHHHHHHHHHHHHHHhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCC---------Cc
Confidence 99999987776653322111000 000 0112456799999999999999999999999999 665 68
Q ss_pred eeEEEEeecC----------------------------CCCHHHHHHHHHHhhh-cCCCEEEEeccCCCChHHHHHHHHH
Q 041113 643 SIKICALIDS----------------------------NKSPVEVASIATTLVE-EGFTAIKLKVARRADPIKDAEVIQE 693 (983)
Q Consensus 643 ~i~~~~~~~~----------------------------~~~~~~~~~~~~~~~~-~G~~~~KiKig~~~~~~~d~~~v~~ 693 (983)
+|++|++... ..+++++++++++..+ .||++||+|+|. .++++|+++|++
T Consensus 162 ~V~~y~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KlKvG~-~~~~~di~~v~a 240 (464)
T 4g8t_A 162 AVEMLGYLFFIGDRKKTTLAYQNQENDPCDWYRVRHEEAMTPESVVRLAEAAYEKYGFNDFKLKGGV-LDGFEEAEAVTA 240 (464)
T ss_dssp EEEBCEEECCBCCGGGSCSCCCCCTTCSSHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSCEEEECSS-SCHHHHHHHHHH
T ss_pred eEEEEEEeeccCcccccchhhhcccccccchhhhcccccCCHHHHHHHHHHHHHHcCCCeEEEeCCC-CCHHHHHHHHHH
Confidence 9999987531 1256777777776654 699999999997 478999999999
Q ss_pred HHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--C----hHHHHHHHhhcCCcEEeCCCccCcCCChH
Q 041113 694 VRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--N----EEDIIKYCEESGLPVALDETIDKFQKDPL 767 (983)
Q Consensus 694 vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~----~~~~~~l~~~~~ipIa~dEs~~~~~~~~~ 767 (983)
+|+++| ++.||||+|++||+++|+++++.|+++ +.|||||++ + .+.+++|++++++|||+||++++..+
T Consensus 241 vrea~p-d~~L~vDaN~~wt~~~Ai~~~~~le~~-l~wiEeP~~~~d~~~~~e~~a~lr~~~~iPIa~gE~~~~~~~--- 315 (464)
T 4g8t_A 241 LAKRFP-DARITLDPNGAWSLDEAVKIGKQLKGV-LAYAEDPCGAEQGYSGREIMAEFRRATGLPTATNMIATDWRQ--- 315 (464)
T ss_dssp HHHHST-TCCEEEECTTCBCHHHHHHHHHHTTTT-CSCEESCBCCBTTBCHHHHHHHHHHHHCCCEEESSSSCSHHH---
T ss_pred HHhhCC-CceEEEECCCccCHHHHHHHHHHhhhc-cceeecCcCcccccchHHHHHhhhccCCCCccccccccchhh---
Confidence 999995 799999999999999999999999998 999999998 3 25578899999999999999999764
Q ss_pred HHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCC
Q 041113 768 NMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELC 846 (983)
Q Consensus 768 ~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~ 846 (983)
+..+++.+ +|++++| +++|||+++++++++|+++|++++.|++.+++|++++++|+++++||...
T Consensus 316 --~~~~i~~~avdi~~~d-~~~GGit~~~kia~lA~~~gi~v~~h~~~~~~I~laA~~hlaaa~pn~~~----------- 381 (464)
T 4g8t_A 316 --MGHTISLQSVDIPLAD-PHFWTMQGSIRVAQMCHEWGLTWGSHSNNHFDISLAMFTHVAAAAPGDIT----------- 381 (464)
T ss_dssp --HHHHHHHTCCSEEBCC-HHHHCHHHHHHHHHHHHHHTCCCBCCCCSCCHHHHHHHHHHHTTCCSCCC-----------
T ss_pred --HHHHHHhhCCCEEecc-ccccchHHHHHHHHHHHHcCCEEEEcCCcccHHHHHHHHHHHHhCCCCCc-----------
Confidence 55555544 6888888 58999999999999999999999988899999999999999999986310
Q ss_pred CCCccCccchhcccccCCCCCceeec----cCCCCeeeEEecchhhhhhhc
Q 041113 847 PPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEASVAKATHILQNL 893 (983)
Q Consensus 847 ~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~ 893 (983)
.... ......+.++++.+|+.+++ +|++||||||+| ++.++++
T Consensus 382 -~~~~-~~~~~~~~~~l~~~p~~i~dG~i~vP~~PGLGvelD--~d~l~ky 428 (464)
T 4g8t_A 382 -AIDT-HWIWQEGNQRLTKEPFQIKGGLVEVPKKPGLGVELD--MDQVMKA 428 (464)
T ss_dssp -CBCC-CHHHHTTSCCSBSSCCCEETTEEECCSSSBTCCCBC--HHHHHHH
T ss_pred -cccc-cccccchhHhhcCCCCeeECCEEECCCCCCCceEEC--HHHHHHH
Confidence 0000 01123346788899999984 999999999999 7777775
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=488.95 Aligned_cols=358 Identities=15% Similarity=0.194 Sum_probs=284.1
Q ss_pred ccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEee-cCcCcCcccHHHHHHHHHHHHhHh
Q 041113 490 LSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEV-APLEIHKENLLDAEEQLRFLLHFM 568 (983)
Q Consensus 490 ~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~-~~~~~~~~~~~~~~~~l~~~~~~l 568 (983)
|+.|||++|+++.+++|+..|+.+ ...++|+|+|++|++||||+ .+... +...+...++.+.|.|
T Consensus 1 ~~~MkI~~i~~~~~~~p~~~p~~~-----------~~~v~V~v~td~G~~G~Ge~a~~~g~---~~~~~~~~i~~l~p~l 66 (407)
T 2o56_A 1 MSLMKITSVDIIDVANDFASATSK-----------WRPVVVKINTDEGISGFGEVGLAYGV---GASAGIGMAKDLSAII 66 (407)
T ss_dssp --CCCEEEEEEEECCCCC-----C-----------CCCEEEEEEETTSCEEEEEESCSSSS---CHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEEeccccCCCccc-----------ceeEEEEEEeCCCCEEEEeeccCCCC---chHHHHHHHHHHHHHh
Confidence 456899999999999999888531 13579999999999999999 44322 2234455667799999
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEE
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA 648 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~ 648 (983)
+|+++.+++.++..+.....+.. ...+...+|++|||+||||++||.+|+|||+||||.. +++||+|+
T Consensus 67 iG~d~~~~~~i~~~l~~~~~~~~---~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~---------~~~vp~y~ 134 (407)
T 2o56_A 67 IGMDPMNNEAIWEKMLKKTFWGQ---GGGGIFSAAMSGIDIALWDIKGKAWGVPLYKMLGGKS---------REKIRTYA 134 (407)
T ss_dssp TTSCTTCHHHHHHHHHHSSSGGG---GCBHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCS---------CSSEEEEE
T ss_pred CCCChHHHHHHHHHHHHhccccC---CCchHHHhHHHHHHHHHHHHhhhhcCCcHHHHcCCCC---------CCeeeeee
Confidence 99998876655432211000000 1123457899999999999999999999999999975 47799998
Q ss_pred e-ec-CCC---------CHHHHHHHHHHhhhcCCCEEEEec------cCC-----------CChHHHHHHHHHHHHHcCC
Q 041113 649 L-ID-SNK---------SPVEVASIATTLVEEGFTAIKLKV------ARR-----------ADPIKDAEVIQEVRKKVGH 700 (983)
Q Consensus 649 ~-~~-~~~---------~~~~~~~~~~~~~~~G~~~~KiKi------g~~-----------~~~~~d~~~v~~vr~~~g~ 700 (983)
+ +. +.. +++++.+.+++++++||++||+|+ |.. .+++.|+++|++||+++|+
T Consensus 135 ~~i~~g~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~~~~~~~~~~~~~e~v~avR~a~G~ 214 (407)
T 2o56_A 135 SQLQFGWGDGSDKDMLTEPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLGYDRMAAIRDAVGP 214 (407)
T ss_dssp ECGGGCCSTTCTTCCCCSHHHHHHHHHHHHHTTCSEEEECCSSBCTTSCBSCSCCCSSCCHHHHHHHHHHHHHHHHHHCT
T ss_pred eeccCCccccccccccCCHHHHHHHHHHHHHcCCCEEEEcccccCCcCccccCcccCCCchhHHHHHHHHHHHHHHhcCC
Confidence 7 53 223 899999999999999999999997 420 0357799999999999999
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-
Q 041113 701 RIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG- 777 (983)
Q Consensus 701 ~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~- 777 (983)
++.|++|+|++|++++|+++++.|+++++.|||||++ +++.+++|++++++||++||++.+.. .+..+++.+
T Consensus 215 d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~-----~~~~~i~~~~ 289 (407)
T 2o56_A 215 DVDIIAEMHAFTDTTSAIQFGRMIEELGIFYYEEPVMPLNPAQMKQVADKVNIPLAAGERIYWRW-----GYRPFLENGS 289 (407)
T ss_dssp TSEEEEECTTCSCHHHHHHHHHHHGGGCCSCEECSSCSSSHHHHHHHHHHCCSCEEECTTCCHHH-----HHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEeCCCChhhHHHHHHHHHhCCCCEEeCCCcCCHH-----HHHHHHHcCC
Confidence 9999999999999999999999999999999999998 78999999999999999999999865 366666544
Q ss_pred ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccc--
Q 041113 778 IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGT-- 855 (983)
Q Consensus 778 ~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~-- 855 (983)
+|++++|++++||++++++++++|+++|+++++|++ .|+|++++++||+++++|+. . +.+..
T Consensus 290 ~d~v~ik~~~~GGite~~~i~~~A~~~g~~~~~h~~-~s~i~~aa~~hlaaa~~~~~--~-------------~e~~~~~ 353 (407)
T 2o56_A 290 LSVIQPDICTCGGITEVKKICDMAHVYDKTVQIHVC-GGPISTAVALHMETAIPNFV--I-------------HELHRYA 353 (407)
T ss_dssp CSEECCCTTTTTHHHHHHHHHHHHHTTTCEECCCCC-SCHHHHHHHHHHHHHCTTBC--C-------------EEEEGGG
T ss_pred CCEEecCccccCCHHHHHHHHHHHHHcCCeEeecCC-CCHHHHHHHHHHHHhCCCce--e-------------Eeecccc
Confidence 799999999999999999999999999999988776 59999999999999998641 1 01101
Q ss_pred hhcccccCCCCCceeec----cCCCCeeeEEecchhhhhhhcccc
Q 041113 856 YQWLKEDVTTDPISICH----NSCRGFVEASVAKATHILQNLQIN 896 (983)
Q Consensus 856 ~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~ 896 (983)
...+..|++.+|+.+++ +|++||||+++| ++.++++.+.
T Consensus 354 ~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d--~~~l~~~~~~ 396 (407)
T 2o56_A 354 LLEPNTQTCKYNYLPKNGMYEVPELPGIGQELT--EETMKKSPTI 396 (407)
T ss_dssp GSHHHHTTBSCCCCCBTTEECCCCSSBTSCCBC--HHHHHHSCEE
T ss_pred ccccHHHhccCCceecCCEEECCCCCCCCceeC--HHHHHhccCC
Confidence 11235677777888874 899999999999 8888777643
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-53 Score=480.13 Aligned_cols=355 Identities=17% Similarity=0.180 Sum_probs=285.2
Q ss_pred eeEeEEEEEEEEeeCCCCCc---cc-cccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHH-HHHhH
Q 041113 493 CKICRMEYSLYRIQLCAPPT---SS-YIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLR-FLLHF 567 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~---~~-~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~-~~~~~ 567 (983)
|||++|+++.+++|++.||. ++ .+.+ ..++.++|+|+|++|++||||+.+ ++. +...++ .++|.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~----~~~~~~~V~v~td~G~~G~GE~~~-----~~~--~~~~i~~~l~~~ 69 (382)
T 1rvk_A 1 MIITDVEVRVFRTTTRRHSDSAGHAHPGPA----HQVEQAMLTVRTEDGQEGHSFTAP-----EIV--RPHVIEKFVKKV 69 (382)
T ss_dssp CBEEEEEEEEEEEEEEEEECTTSCEEEEEE----EEEEEEEEEEEETTSCEEEEEECG-----GGG--CHHHHHHTHHHH
T ss_pred CeEeEEEEEEEecCCCCccccccccccccc----ccceEEEEEEEECCCCEEEEEecC-----chH--HHHHHHHHHHHH
Confidence 69999999999999999987 66 4332 347899999999999999999972 111 234455 48899
Q ss_pred hccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEE
Q 041113 568 MTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKIC 647 (983)
Q Consensus 568 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~ 647 (983)
|+|+++.++..++..+.. .... ...+..++|++|||+||||++||.+|+|||+||||.+ ++||+|
T Consensus 70 l~g~d~~~~~~~~~~l~~----~~~~-~g~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~----------~~vp~~ 134 (382)
T 1rvk_A 70 LIGEDHRDRERLWQDLAH----WQRG-SAAQLTDRTLAVVDCALWDLAGRSLGQPVYKLIGGYR----------DKVLAY 134 (382)
T ss_dssp HTTSBTTCHHHHHHHHHH----HHTT-TTTCSCHHHHHHHHHHHHHHHHHHHTCBHHHHHCCSC----------SEEEEE
T ss_pred HcCCChHHHHHHHHHHHH----hhhc-ccchHHHHHHHHHHHHHHHHhHhHhCCCHHHHhCCCC----------Ccceec
Confidence 999998876555432211 1111 1123467899999999999999999999999999974 679999
Q ss_pred Eeec-C------CCCHHHHHHHHHHhhhcCCCEEEEeccCC-----CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHH
Q 041113 648 ALID-S------NKSPVEVASIATTLVEEGFTAIKLKVARR-----ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQ 715 (983)
Q Consensus 648 ~~~~-~------~~~~~~~~~~~~~~~~~G~~~~KiKig~~-----~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~ 715 (983)
+++. + ..+++++.+.+++++++||++||+|+|.+ .+++.|+++|++||+++|+++.|++|+|++|+.+
T Consensus 135 ~~~~~g~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~ 214 (382)
T 1rvk_A 135 GSIMCGDELEGGLATPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRT 214 (382)
T ss_dssp EEECCCCCCTTTTSSHHHHHHHHHHHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHH
T ss_pred EEeccCccccccCCCHHHHHHHHHHHHHCCCCEEEEcCCcCccccccchHHHHHHHHHHHHHhCCCCeEEEECCCCCCHH
Confidence 7653 2 36899999999999999999999999861 1578999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccC-cCCChHHHHHhhcCC-CceEEEEcCCCcCCH
Q 041113 716 EALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDK-FQKDPLNMLEKYAHP-GIVAIVIKPSVIGGF 791 (983)
Q Consensus 716 ~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~-~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl 791 (983)
+|+++++.|+++++.|||||++ +++.+++|++++++||++||++.+ ..+ +..+++. .+|++++|++++||+
T Consensus 215 ~a~~~~~~l~~~~i~~iE~P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~-----~~~~i~~~~~d~v~ik~~~~GGi 289 (382)
T 1rvk_A 215 DALALGRGLEKLGFDWIEEPMDEQSLSSYKWLSDNLDIPVVGPESAAGKHWH-----RAEWIKAGACDILRTGVNDVGGI 289 (382)
T ss_dssp HHHHHHHHHHTTTCSEEECCSCTTCHHHHHHHHHHCSSCEEECSSCSSHHHH-----HHHHHHTTCCSEEEECHHHHTSH
T ss_pred HHHHHHHHHHhcCCCEEeCCCChhhHHHHHHHHhhCCCCEEEeCCccCcHHH-----HHHHHHcCCCCEEeeCchhcCCH
Confidence 9999999999999999999998 788999999999999999999999 753 5555544 579999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhcccc-CCCCCccCccchhcccccCCCCCcee
Q 041113 792 ENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRE-LCPPVAQGLGTYQWLKEDVTTDPISI 870 (983)
Q Consensus 792 ~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~d~~~~p~~~ 870 (983)
+++++++++|+++|+++++| +++++ ++|++++++|+. . .++. +.+...+.+ .+++.+|++ +|+.
T Consensus 290 t~~~~i~~~A~~~g~~~~~~-~~~~~-----~~~laaa~~~~~--~---~E~~~~~~~~~~~~--~~~~~~d~~-~~~~- 354 (382)
T 1rvk_A 290 TPALKTMHLAEAFGMECEVH-GNTAM-----NLHVVAATKNCR--W---YERGLLHPFLEYDD--GHDYLKSLS-DPMD- 354 (382)
T ss_dssp HHHHHHHHHHHHTTCCEEEC-CCSHH-----HHHHHHHCSSCC--C---EEEEEECTTSCGGG--CCTTBSSCS-SCBC-
T ss_pred HHHHHHHHHHHHcCCeEeec-CCCCH-----HHHHHHhCCccc--e---eeeccccccccccc--cchhHHhhc-cCCC-
Confidence 99999999999999998877 78887 899999998631 1 1111 000000111 233467887 7777
Q ss_pred ec----cCCCCeeeEEecchhhhhhhccc
Q 041113 871 CH----NSCRGFVEASVAKATHILQNLQI 895 (983)
Q Consensus 871 ~~----~P~~pGlGv~~d~a~~~~~~~~~ 895 (983)
++ +|++||||+++| ++.++++.+
T Consensus 355 ~~G~~~~p~~PGlGv~~d--~~~l~~~~~ 381 (382)
T 1rvk_A 355 RDGFVHVPDRPGLGEDID--FTFIDNNRV 381 (382)
T ss_dssp TTSEEECCSCSBTCCCBC--HHHHHHTBC
T ss_pred cCCEEECCCCCCCccccC--HHHHHhhcC
Confidence 63 899999999999 888877654
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-53 Score=482.76 Aligned_cols=359 Identities=17% Similarity=0.192 Sum_probs=283.0
Q ss_pred ceeEeEEEEEEEEeeCCCCCcccccccc--CcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhc
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHN--RSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMT 569 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~--~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~ 569 (983)
.|||++|+++.+++||+.||.++.+... ...+.++.++|+|+|++|++||||+.......+ .+...++.++|.|+
T Consensus 12 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~~~---~~~~~i~~l~~~l~ 88 (393)
T 2og9_A 12 SDRITWVRISSCYLPLATPISDAKVLTGRQKPMTEIAILFAEIETAGGHQGLGFSYSKRAGGP---GQFAHAREIAPALI 88 (393)
T ss_dssp CCCEEEEEEEEEEEECSSCCC------------CEEEEEEEEEEETTSCEEEEEEEEESTTHH---HHHHHHHHHGGGGT
T ss_pred CCeEeEEEEEEEeccCCCccccccccccccCCcCCccEEEEEEEECCCCEEEEEecCcccchH---HHHHHHHHHHHHHc
Confidence 3899999999999999999999865100 001347899999999999999999932222222 34445667899999
Q ss_pred cCcccccccccccCchhhhhhhc-CCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEE
Q 041113 570 GAKISYFLPLLKGSFSSWIWSTL-GIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA 648 (983)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~ 648 (983)
|+++.++..++..+. ... .....+..++|++|||+||||++||.+|+|||+||||.+ ++||+|+
T Consensus 89 G~d~~~~~~i~~~l~-----~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~llGg~~----------~~vp~y~ 153 (393)
T 2og9_A 89 GEDPSDIAKLWDKLC-----WAGASAGRSGLSTQAIGAFDVALWDLKAKRAGLSLAKLLGSYR----------DSVRCYN 153 (393)
T ss_dssp TSCTTCHHHHHHHHH-----HTTGGGCSSSHHHHHHHHHHHHHHHHHHHHTTCBHHHHHCCSC----------SEEEEEB
T ss_pred CCChhhHHHHHHHHH-----HhhhhcCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC----------CceEEEE
Confidence 999887655543221 110 011223567999999999999999999999999999975 6799998
Q ss_pred eecCC-C-CHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhccc
Q 041113 649 LIDSN-K-SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD 726 (983)
Q Consensus 649 ~~~~~-~-~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~ 726 (983)
+++.. . +++++.+.+++++++||++||+|+|. .+++.|+++|++||+++|+++.|++|+|++|++++|+++++.|++
T Consensus 154 ~~g~~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~-~~~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~ 232 (393)
T 2og9_A 154 TSGGFLHTPIDQLMVNASASIERGIGGIKLKVGQ-PDGALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEP 232 (393)
T ss_dssp CTTCCTTSCHHHHHHHHHHHHHTTCCCEEEECCC-SCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGG
T ss_pred ECCCcCCCCHHHHHHHHHHHHHcCCCEEEEecCC-CCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 74222 3 89999999999999999999999996 368999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHH
Q 041113 727 CDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQR 803 (983)
Q Consensus 727 ~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~ 803 (983)
+++.|||||++ +++.+++|++++++||++||++.+.. .+..+++. .+|++++|++++||++++++++++|++
T Consensus 233 ~~i~~iE~P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~-----~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~ 307 (393)
T 2og9_A 233 FNLVWIEEPLDAYDHEGHAALALQFDTPIATGEMLTSAA-----EHGDLIRHRAADYLMPDAPRVGGITPFLKIASLAEH 307 (393)
T ss_dssp GCCSCEECCSCTTCHHHHHHHHHHCSSCEEECTTCCSHH-----HHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHH
T ss_pred hCCCEEECCCCcccHHHHHHHHHhCCCCEEeCCCcCCHH-----HHHHHHHCCCCCEEeeCccccCCHHHHHHHHHHHHH
Confidence 99999999998 78899999999999999999999865 36666654 479999999999999999999999999
Q ss_pred cCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCee
Q 041113 804 HGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFV 879 (983)
Q Consensus 804 ~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGl 879 (983)
+|++++.|++.+ .++|++++++|.. . . + ...+ ..+++.+|+.+++ +|++|||
T Consensus 308 ~gi~~~~h~~~~------~~~~laaa~~~~~--~---~--e----------~~~~-~~~~~~~~~~~~~G~~~~p~~PGl 363 (393)
T 2og9_A 308 AGLMLAPHFAME------LHVHLAAAYPREP--W---V--E----------HFEW-LEPLFNERIEIRDGRMLVPTRPGL 363 (393)
T ss_dssp TTCEECCCSCHH------HHHHHHHTSSSCC--E---E--E----------CCCT-TGGGBSCCCCEETTEEECCCSSBT
T ss_pred cCCEEeccCccH------HHHHHHhhCCCCc--e---e--e----------cccc-hHHHccCCCeeeCCEEECCCCCCC
Confidence 999988766543 3689999988631 1 0 0 0112 2346667888874 8999999
Q ss_pred eEEecchhhhhhhccccccccc
Q 041113 880 EASVAKATHILQNLQINNDVIC 901 (983)
Q Consensus 880 Gv~~d~a~~~~~~~~~~~~~i~ 901 (983)
|+++| ++. +++++....+.
T Consensus 364 Gv~~d--~~~-~~~~~~~~~~~ 382 (393)
T 2og9_A 364 GLTLS--GQV-KAWTREEAQVG 382 (393)
T ss_dssp CCCBC--THH-HHHEEEEEEEE
T ss_pred CeeeC--HHH-HHhccCHHhhC
Confidence 99999 555 67766554443
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-53 Score=483.40 Aligned_cols=357 Identities=17% Similarity=0.204 Sum_probs=285.4
Q ss_pred eeEeEEEEEEEEeeCCCCCcccccccc--CcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhcc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHN--RSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTG 570 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~--~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g 570 (983)
|||++|+++.+++|++.||.++.+... ...+.++.++|+|+|++|++||||+.......+ .+...++.++|.|+|
T Consensus 26 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~~~---~~~~~~~~l~p~l~G 102 (398)
T 2pp0_A 26 DRIEWVKLSLAFLPLATPVSDAKVLTGRQKPLTEVAIIIAEIRSRDGFEGVGFSYSKRAGGQ---GIYAHAKEIADNLLG 102 (398)
T ss_dssp CCEEEEEEEEEEEEEEEEECCHHHHTTSSCCEEEEEEEEEEEEETTSCEEEEEEEESSTTHH---HHHHHHHHHGGGGTT
T ss_pred CeEEEEEEEEEeccCCCcccccccccccccccCCCcEEEEEEEECCCCEEEEEecCccchHH---HHHHHHHHHHHHHcC
Confidence 899999999999999999998854100 001348899999999999999999943222222 344456678999999
Q ss_pred CcccccccccccCchhhhhhhcC-CCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEe
Q 041113 571 AKISYFLPLLKGSFSSWIWSTLG-IPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICAL 649 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~ 649 (983)
+++.++..++..+. .... ....+..++|++|||+||||++||.+|+|||+||||.+ ++||+|++
T Consensus 103 ~d~~~~~~i~~~l~-----~~~~~~~~~~~~~~A~~aid~AlwDl~ak~~g~Pl~~lLGg~~----------~~vp~y~~ 167 (398)
T 2pp0_A 103 EDPNDIDKIYTKLL-----WAGASVGRSGMAVQAISPIDIALWDMKAKRAGLPLAKLLGAHR----------DSVQCYNT 167 (398)
T ss_dssp SCTTCHHHHHHHHH-----HHTGGGCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHHCCSC----------SEEEEEEC
T ss_pred CCchhHHHHHHHHH-----HhhcccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC----------CCeeEEEe
Confidence 99887655543221 1100 11224567899999999999999999999999999975 67999987
Q ss_pred ecC--CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccC
Q 041113 650 IDS--NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727 (983)
Q Consensus 650 ~~~--~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~ 727 (983)
++. ..+++++.+.+++++++||++||+|+|.+ +++.|+++|++||+++|+++.|++|+|++|++++|+++++.|+++
T Consensus 168 ~g~~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~-~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~ 246 (398)
T 2pp0_A 168 SGGFLHTPLDQVLKNVVISRENGIGGIKLKVGQP-NCAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQF 246 (398)
T ss_dssp TTSCTTSCHHHHHHHHHHHHHTTCSCEEEECCCS-CHHHHHHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGG
T ss_pred cCCcCCCCHHHHHHHHHHHHHhCCCeEEEecCCC-CHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHc
Confidence 522 23899999999999999999999999963 789999999999999999999999999999999999999999999
Q ss_pred CCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHc
Q 041113 728 DLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRH 804 (983)
Q Consensus 728 ~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~ 804 (983)
++.|||||++ +++.+++|++++++||++||++.+.. .+..+++. .+|++++|++++||++++++++++|+++
T Consensus 247 ~i~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~-----~~~~~i~~~~~d~v~ik~~~~GGite~~~i~~~A~~~ 321 (398)
T 2pp0_A 247 NLIWIEEPLDAYDIEGHAQLAAALDTPIATGEMLTSFR-----EHEQLILGNASDFVQPDAPRVGGISPFLKIMDLAAKH 321 (398)
T ss_dssp TCSCEECCSCTTCHHHHHHHHHHCSSCEEECTTCCSHH-----HHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHHT
T ss_pred CCceeeCCCChhhHHHHHHHHhhCCCCEEecCCcCCHH-----HHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHc
Confidence 9999999998 78899999999999999999999865 36666654 4799999999999999999999999999
Q ss_pred CCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeee
Q 041113 805 GKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVE 880 (983)
Q Consensus 805 gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlG 880 (983)
|++++.|++.+ .++|++++++|.. . . +...+ ..+++.+|+.+++ +|++||||
T Consensus 322 gi~~~~h~~~~------~~~~laaa~~~~~--~---~------------e~~~~-~~~~~~~~~~~~~G~i~~p~~PGlG 377 (398)
T 2pp0_A 322 GRKLAPHFAME------VHLHLSAAYPLEP--W---L------------EHFEW-LNPLFNEQLELRDGRMWISDRHGLG 377 (398)
T ss_dssp TCEECCCSCHH------HHHHHHHTCSSCC--C---E------------EECST-TGGGBSCCCEEETTEEECCSSSBTC
T ss_pred CCeEeecCccH------HHHHHHhcCCCcc--e---e------------ecccc-hhhhccCCCeeeCCEEECCCCCCCC
Confidence 99988666544 2689999988631 0 0 01112 2346677888874 89999999
Q ss_pred EEecchhhhhhhcccccccc
Q 041113 881 ASVAKATHILQNLQINNDVI 900 (983)
Q Consensus 881 v~~d~a~~~~~~~~~~~~~i 900 (983)
+++| ++. +++++....+
T Consensus 378 v~~d--~~~-~~~~~~~~~~ 394 (398)
T 2pp0_A 378 FTLS--EQA-RRWTQLTCEF 394 (398)
T ss_dssp CCBC--HHH-HHTEEEEEEE
T ss_pred cccC--HHH-HHhhhcHHhc
Confidence 9999 553 7776654443
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-52 Score=477.16 Aligned_cols=350 Identities=17% Similarity=0.133 Sum_probs=284.6
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHh-HhccC
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLH-FMTGA 571 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~-~l~g~ 571 (983)
|||++|+++.++ |. + ...++|+|+|++|++||||+.+. + +++...+...++.+.| .|+|+
T Consensus 3 mkI~~i~~~~v~-~~--~--------------~~~v~V~v~td~G~~G~GE~~~~-~-g~~~~~~~~~i~~l~~~~l~G~ 63 (392)
T 2poz_A 3 LKITGVNIYLLK-SG--R--------------LHPVLVEISTDEGITGAGEAGIA-Y-GVGGTAAAGMIKDLSERFLIGK 63 (392)
T ss_dssp CCEEEEEEEECC-BT--T--------------BCCEEEEEEETTSCCEEEEESCS-S-SSCHHHHHHHHHHHHHHHTTTC
T ss_pred CeEEEEEEEEEe-cC--C--------------ccEEEEEEEECCCCEEEEeecCC-c-CCchHHHHHHHHHhhHhhhcCC
Confidence 899999999886 32 1 12579999999999999999764 1 3444455666778999 99999
Q ss_pred cccccccccccCchhhhhhhcCC--CCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEe
Q 041113 572 KISYFLPLLKGSFSSWIWSTLGI--PACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICAL 649 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~ 649 (983)
++.+++.++..+ ...... ...+..++|++|||+||||++||.+|+|||+||||.. +++||+|++
T Consensus 64 d~~~~~~i~~~l-----~~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg~~---------~~~v~~y~~ 129 (392)
T 2poz_A 64 DPSRIEELWSTM-----YDHSFWAKNGGAIIFAGISAIEQALWDIKGKCLGVPVYELFGGKI---------RDRVRAYAN 129 (392)
T ss_dssp CTTCHHHHHHHH-----HHHSSTTTTCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCS---------CSEEEEEEC
T ss_pred ChhHHHHHHHHH-----HHhcccccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcCCCc---------cCceEEEEe
Confidence 988766554322 111111 1223457899999999999999999999999999975 468999985
Q ss_pred --ecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC----------------CChHHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 041113 650 --IDSNKSPVEVASIATTLVEEGFTAIKLKVARR----------------ADPIKDAEVIQEVRKKVGHRIELRVDANRN 711 (983)
Q Consensus 650 --~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~----------------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~ 711 (983)
.....+++++.+.+++++++||++||+|+|.+ .+++.|+++|++||+++|+++.|++|+|++
T Consensus 130 g~~~~~~~~~~~~~~a~~~~~~Gf~~vKik~g~~~~g~~~~~~~~gg~~~~~~~~~~e~v~avr~a~G~d~~l~vD~n~~ 209 (392)
T 2poz_A 130 GWYGAADTPDEFARAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAAGPEIELMVDLSGG 209 (392)
T ss_dssp SCCTTCCSHHHHHHHTHHHHHTTCSEEEECCCCEEETTEEECCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTC
T ss_pred ccccCCCCHHHHHHHHHHHHHcCCCEEEEecccccccccccccccCCcchhhHHHHHHHHHHHHHhcCCCCEEEEECCCC
Confidence 32346899999999999999999999999820 135789999999999999999999999999
Q ss_pred CCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCc
Q 041113 712 WTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVI 788 (983)
Q Consensus 712 ~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~ 788 (983)
|++++|+++++.|+++++.|||||++ +++.+++|++++++||++||++.+.. .+..+++.+ +|++++|++++
T Consensus 210 ~~~~~a~~~~~~l~~~~i~~iE~P~~~~~~~~~~~l~~~~~ipIa~dE~~~~~~-----~~~~~i~~~~~d~v~ik~~~~ 284 (392)
T 2poz_A 210 LTTDETIRFCRKIGELDICFVEEPCDPFDNGALKVISEQIPLPIAVGERVYTRF-----GFRKIFELQACGIIQPDIGTA 284 (392)
T ss_dssp SCHHHHHHHHHHHGGGCEEEEECCSCTTCHHHHHHHHHHCSSCEEECTTCCHHH-----HHHHHHTTTCCSEECCCTTTS
T ss_pred CCHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHhhCCCCEEecCCcCCHH-----HHHHHHHcCCCCEEecCcccc
Confidence 99999999999999999999999998 78899999999999999999999864 466777655 79999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCcc-chhcccccCCCCC
Q 041113 789 GGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLG-TYQWLKEDVTTDP 867 (983)
Q Consensus 789 GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~d~~~~p 867 (983)
||++++++++++|+++|+++++|++. ++|++++++||+++++|+. . .+ +..+ .+..+.+|++.+|
T Consensus 285 GGit~~~~i~~~A~~~g~~~~~h~~~-s~i~~aa~~hlaaa~~~~~--~---~e--------~~~~~~~~~~~~d~~~~~ 350 (392)
T 2poz_A 285 GGLMETKKICAMAEAYNMRVAPHVCG-SSLIETATLQLEANITNFM--I---HE--------HYPAFKADDGYVEVLENP 350 (392)
T ss_dssp SCHHHHHHHHHHHHTTTCEECCCCCS-SHHHHHHHHHHHHHCTTBC--C---EE--------ECGGGGGSTTCCCCBSSC
T ss_pred CCHHHHHHHHHHHHHcCCeEecCCCC-CHHHHHHHHHHHHhCCCce--E---Ee--------eccccccCchHHHhccCC
Confidence 99999999999999999999988876 9999999999999998641 1 00 1110 1112346777788
Q ss_pred ceeec----cCCCCeeeEEecchhhhhhhcccc
Q 041113 868 ISICH----NSCRGFVEASVAKATHILQNLQIN 896 (983)
Q Consensus 868 ~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~ 896 (983)
+.+++ +|++||||+++| ++.++++...
T Consensus 351 ~~~~~G~~~~p~~PGlGv~~d--~~~l~~~~~~ 381 (392)
T 2poz_A 351 PSISSGYFEMPNGPGLGAVLI--KRNIEPYLWA 381 (392)
T ss_dssp CCEETTEEECCCSSBTSCCBC--HHHHGGGEEE
T ss_pred CeecCCEEECCCCCCCCceeC--HHHHHhccCC
Confidence 88874 899999999999 8887776643
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-52 Score=499.31 Aligned_cols=406 Identities=29% Similarity=0.443 Sum_probs=300.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhH-HHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQM-AEVL 80 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~ 80 (983)
+++++++|+ .++|||||||+||+|+++.+............+..|.+...+. ...+..+.+ ++++
T Consensus 148 i~~~i~~A~---~~~r~GPV~i~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 213 (556)
T 3hww_A 148 LVSTIDHAL---GTLHAGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPW-----------LREAPRLESEKQRD 213 (556)
T ss_dssp HHHHHHHHH---HSCCSSCEEEEEECCSCCSCCCSSTTHHHHHTTGGGGGCCSCS-----------SCCCCCCCCCCCTT
T ss_pred HHHHHHHHH---hcCCCCCEEEeCCcCCCCCCCcccccccccccccccccccccc-----------ccccccccchhhhh
Confidence 667788888 3689999999999997765321100000000001111000000 001111122 2345
Q ss_pred HHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 81 ELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
++|.+||||+|++|++ +.++.+++.+|||++|+||++|+++| ||.++++||++ +| +..++..+++
T Consensus 214 ~~l~~A~rPvIl~G~~-~~~a~~~l~~lae~~~~PV~~t~~~~------~~~~~~~~~~~--lg------~~~~~~~~~~ 278 (556)
T 3hww_A 214 WFFWRQKRGVVVAGRM-SAEEGKKVALWAQTLGWPLIGDVLSQ------TGQPLPCADLW--LG------NAKATSELQQ 278 (556)
T ss_dssp HHHHTTSCEEEEECBC-CHHHHHHHHHHHHHHTCCEEECTTTC------SCCSSCCHHHH--TT------SHHHHHHHTT
T ss_pred hhhccCCCeEEEECCC-ChHHHHHHHHHHHhcCCEEEEccCCC------CCCCcCcHHHH--hc------CchhhhcccC
Confidence 6788999999999985 45667899999999999999998767 79999999985 33 2345567889
Q ss_pred CCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~~ 240 (983)
||+||+||+++++..+.+|...+.+.++||||+|+.++++++++++.|++|++.++++|.+. ....|.+++.+.++
T Consensus 279 aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~----~~~~w~~~~~~~~~ 354 (556)
T 3hww_A 279 AQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAE----KRQPWCVEIPRLAE 354 (556)
T ss_dssp CSEEEEESBCCCCHHHHHHHHHCCCSEEEEEESSCSCCCTTCCSEEEEESCHHHHHHHSCCC----CCCCCCSSHHHHHH
T ss_pred CCEEEEcCCCcccHHHHHHHhcCCCCeEEEECCCCccCCCCCCceEEEEcCHHHHHHhcccc----cchHHHHHHHHHHH
Confidence 99999999999888888888777666899999999999999999999999999999997543 22345544444333
Q ss_pred HHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecC
Q 041113 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNR 320 (983)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 320 (983)
.+..... ....++++.++++.|++.+|++++|++|+++++|+...+... . ++ .++..++
T Consensus 355 ~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~iv~~g~~~~~~~~~~~~~~--~--------------~~--~~~~~~~ 413 (556)
T 3hww_A 355 QAMQAVI---ARRDAFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQL--P--------------AG--YPVYSNR 413 (556)
T ss_dssp HHHHHHH---TTCCSSSHHHHHHTGGGTCCTTCEEEECSSHHHHHHHHHCCC--C--------------TT--CCEEECC
T ss_pred HHHHHHh---hcccCcCHHHHHHHHHHhCCCCCeEEEeCCcHHHHHHHhccC--C--------------CC--ceEEecC
Confidence 3222211 124679999999999999999999999999877776655321 0 01 1134566
Q ss_pred CCCCccchHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccccc
Q 041113 321 GASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQ 400 (983)
Q Consensus 321 G~mG~~g~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~ 400 (983)
|++|++|.+|+|+|+++|.+++|||++|||||+|++|||+|+++ +++|+++||+||++|+|++++++.. ...+.
T Consensus 414 g~~g~~G~l~~A~Gaa~a~~~~vv~i~GDGsf~~~~~eL~ta~~--~~lpv~ivv~NN~~~~~~~~~~~~~----~~~~~ 487 (556)
T 3hww_A 414 GASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQ--VSAPLVLIVVNNNGGQIFSLLPTPQ----SERER 487 (556)
T ss_dssp SSCCSSSHHHHHHHHHHHHCCCEEEEEEHHHHHHTGGGHHHHTT--CSSCEEEEEEESCC--------------------
T ss_pred cccccccHHHHHHHHHhcCCCcEEEEEccHHhhhcchhhHhhcc--cCCCcEEEEEECCCCCcccCCCCcc----hhHHH
Confidence 88888777999999999988999999999999999999999998 9999999999999999998754321 11233
Q ss_pred ccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHHHHHHHH
Q 041113 401 YFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFAR 467 (983)
Q Consensus 401 ~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~~~~~~~ 467 (983)
++...+++||.++|++||+++++|++.+||+++|+++++.+||+||||.+++++++..++++.+.++
T Consensus 488 ~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~~~~~~~l~~~~~~~~ 554 (556)
T 3hww_A 488 FYLMPQNVHFEHAAAMFELKYHRPQNWQELETAFADAWRTPTTTVIEMVVNDTDGAQTLQQLLAQVS 554 (556)
T ss_dssp -CCCCCCCCSHHHHHHTTCEEECCSSHHHHHHHHHHHTTSSSEEEEEEECCSSHHHHHHHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHcCCcEEecCCHHHHHHHHHHHHhCCCCEEEEEECCccccHHHHHHHHHHhh
Confidence 4455678999999999999999999999999999999999999999999999999999999988765
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-52 Score=475.64 Aligned_cols=337 Identities=14% Similarity=0.119 Sum_probs=281.5
Q ss_pred ceeEeEEEEEEEEeeCCCCCcccc-ccccCccee--eeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHh
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSY-IDHNRSRFC--REGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFM 568 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~-~~~~~~~~~--~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l 568 (983)
+|||++|+++.+++|++.||.++. +.+ .. ++.++|+|+|+ |++||||+.. .++.++|.|
T Consensus 11 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~----~~~~~~~~~V~v~td-G~~G~GE~~g-------------~i~~l~p~l 72 (392)
T 3p3b_A 11 DWKVEKIEFAKLTGERARSAGANGRIGV----HGKSCTVDIARITID-GQTGYGSSIH-------------MTPEWAEDV 72 (392)
T ss_dssp TCBEEEEEEEEEEEEEEEEECBCSSSCC----CEEEEEEEEEEEEET-TEEEEEECCS-------------CCHHHHHTT
T ss_pred CCeEEEEEEEEEeccCCCcccccccccc----cCCCCcEEEEEEEEC-CCEEEEeccc-------------HHHHHHHHh
Confidence 489999999999999999998885 333 34 78999999999 9999999861 123577899
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCC----CCcccccccccccee
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYP----LTEIDEEISKRSTSI 644 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg----~~~~~~~~~~~~~~i 644 (983)
+|+++.++..++ .+..++|++|||+||||+.||.+|+|||+|||| .. .+++|
T Consensus 73 ~G~d~~~~~~~~----------------~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~~--------~~~~v 128 (392)
T 3p3b_A 73 IGRRLLDLFDDR----------------GRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETG--------ASLVV 128 (392)
T ss_dssp TTCBGGGGBCTT----------------SCBCGGGHHHHHHHHHHHHHHHHTCBHHHHHC----------------CEEE
T ss_pred cCCCHHHHHHHH----------------hHHHHHHHHHHHHHHHHHHHHHcCCcHHHHhcCcccccc--------ccCCc
Confidence 999887654433 123468999999999999999999999999999 41 03679
Q ss_pred EEEEe--ecCCCCH-------HHHHHHHHHhhhcCCCEEEEeccCC-------CChHHHHHHHHHHHHHcCCCcEEEEEc
Q 041113 645 KICAL--IDSNKSP-------VEVASIATTLVEEGFTAIKLKVARR-------ADPIKDAEVIQEVRKKVGHRIELRVDA 708 (983)
Q Consensus 645 ~~~~~--~~~~~~~-------~~~~~~~~~~~~~G~~~~KiKig~~-------~~~~~d~~~v~~vr~~~g~~~~l~vDa 708 (983)
|+|++ ..+..++ +++.+.+++++++||++||+|+|.. .+++.|+++|+++|+++|+++.|++|+
T Consensus 129 p~~~s~~~~~~~~~~~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~~~~~~~~~e~v~avR~~~g~d~~l~vDa 208 (392)
T 3p3b_A 129 PCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDA 208 (392)
T ss_dssp EEEEEEECBTTTTCCSHHHHHHHHHHHHHHHHHTTCCCEEEECCHHHHTSCHHHHHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred ceeEeecccCCCCcccccchHHHHHHHHHHHHHhCCCEEEECcCcCcccCCccccHHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 99974 2233577 8999999999999999999999841 035889999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcccCCCceeecCCC-ChHHHHHHHhh-----cCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEE
Q 041113 709 NRNWTYQEALEFGFLIKDCDLQYIEEPVQ-NEEDIIKYCEE-----SGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAI 781 (983)
Q Consensus 709 N~~~~~~~a~~~~~~l~~~~i~~iEeP~~-~~~~~~~l~~~-----~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i 781 (983)
|++||+++|+++++.|+++++.|||||++ +++.+++|+++ +++||++|| +.+..+ +..+++.+ +|++
T Consensus 209 n~~~~~~~ai~~~~~l~~~~i~~iE~P~~~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~-----~~~~i~~~~~d~v 282 (392)
T 3p3b_A 209 NNAYNLNLTKEVLAALSDVNLYWLEEAFHEDEALYEDLKEWLGQRGQNVLIADGE-GLASPH-----LIEWATRGRVDVL 282 (392)
T ss_dssp TTCCCHHHHHHHHHHTTTSCEEEEECSSSCCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTT-----HHHHHHTTSCCEE
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEecCCcccHHHHHHHHHhhccCCCCccEEecC-CCCHHH-----HHHHHHcCCCCEE
Confidence 99999999999999999999999999999 88999999998 899999999 999875 55555544 7999
Q ss_pred EEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccc
Q 041113 782 VIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKE 861 (983)
Q Consensus 782 ~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 861 (983)
++|++++ |++++++++++|+++|+++++| ++|+++++++++|++++++|+. . +++++. +..
T Consensus 283 ~ik~~~~-Git~~~~i~~~A~~~gi~~~~h-~~es~i~~~a~l~laa~~~~~~--~-------------~e~~~~--~~~ 343 (392)
T 3p3b_A 283 QYDIIWP-GFTHWMELGEKLDAHGLRSAPH-CYGNAYGIYASGHLSAAVRNFE--F-------------VEYDDI--TIE 343 (392)
T ss_dssp CCBTTTB-CHHHHHHHHHHHHHTTCEECCB-CCSCTHHHHHHHHHGGGCTTBC--C-------------EEECCE--EET
T ss_pred EeCcccc-CHHHHHHHHHHHHHcCCEEEec-CCCCHHHHHHHHHHHHhCCCCc--e-------------eeccch--hhH
Confidence 9999999 9999999999999999998876 9999999999999999998631 0 112222 466
Q ss_pred cCCCCCceeec----cCCCCeeeEEecchhhhhhhccccc
Q 041113 862 DVTTDPISICH----NSCRGFVEASVAKATHILQNLQINN 897 (983)
Q Consensus 862 d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~~ 897 (983)
|++.+|+.+++ +|++||||+++| ++.++++.+..
T Consensus 344 d~~~~~~~~~~G~~~~p~~PGlGv~~d--~~~l~~~~~~~ 381 (392)
T 3p3b_A 344 GMDVSGYRIENGEIHVPATPGFGIVFD--DELVTYLINRS 381 (392)
T ss_dssp TEECTTCEEETTEEEECCSSBTSCEEC--HHHHHHHHHHT
T ss_pred hhccCCCcccCCEEECCCCCccceeEC--HHHHHhhhccc
Confidence 77778888874 899999999999 88888877643
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-52 Score=479.22 Aligned_cols=356 Identities=14% Similarity=0.149 Sum_probs=285.1
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEee-cCcCcCcccHHHHHHHHHHHHhHhccC
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEV-APLEIHKENLLDAEEQLRFLLHFMTGA 571 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~-~~~~~~~~~~~~~~~~l~~~~~~l~g~ 571 (983)
|||++|+++.+++|++.+.. . . ...++|+|+|++|++||||+ .+... +...+...++.+.|.|+|+
T Consensus 3 MkI~~i~~~~~~~pl~~~~~--~-~-------~~~v~V~v~td~G~~G~Ge~~~~~g~---~~~~~~~~i~~l~p~liG~ 69 (410)
T 2gl5_A 3 LKITSIEVFDCELKKRDQTM--S-S-------YNPVLIRVNTDSGLSGIGEVGLAYGA---GAKAGVGIIRDLAPLIVGE 69 (410)
T ss_dssp CCEEEEEEEECCGGGTCGGG--T-T-------CCCEEEEEEETTSCEEEEEESCSSST---THHHHHHHHHHHGGGTTTS
T ss_pred ceEEEEEEEEecccccccCc--c-c-------ccceEEEEEeCCCCEEEEeecCcCCC---ChHHHHHHHHHHHHHhCCC
Confidence 79999999999988865321 0 0 12479999999999999999 54322 2334455666789999999
Q ss_pred cccccccccccCchhhhhhhcCC--CCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEe
Q 041113 572 KISYFLPLLKGSFSSWIWSTLGI--PACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICAL 649 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~ 649 (983)
++.+++.++..+. ..... ...+..++|++|||+||||++||.+|+|||+||||.. +++||+|++
T Consensus 70 d~~~~~~i~~~l~-----~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~---------~~~vp~y~~ 135 (410)
T 2gl5_A 70 DPLNIEKIWEFFF-----RKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLGGKT---------NEKLRTYAS 135 (410)
T ss_dssp CTTCHHHHHHHHH-----HSSSGGGSCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTSCS---------CSSEEEEEE
T ss_pred ChHHHHHHHHHHH-----HhcccccCCchHHHhHHHHHHHHHHHHhhhhcCCcHHHHcCCCc---------cCceeEeEe
Confidence 9887665543221 11100 1223457899999999999999999999999999975 467999987
Q ss_pred -ec-CCC-------CHHHHHHHHHHhhhcCCCEEEEec------cCC----------------CChHHHHHHHHHHHHHc
Q 041113 650 -ID-SNK-------SPVEVASIATTLVEEGFTAIKLKV------ARR----------------ADPIKDAEVIQEVRKKV 698 (983)
Q Consensus 650 -~~-~~~-------~~~~~~~~~~~~~~~G~~~~KiKi------g~~----------------~~~~~d~~~v~~vr~~~ 698 (983)
+. +.. +++++.+.+++++++||++||+|+ |.. .+++.|+++|++||+++
T Consensus 136 ~i~~g~~~~~~~~~~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~~~GG~~~~~~~~~~~e~v~avR~a~ 215 (410)
T 2gl5_A 136 QLQFGWGDKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAM 215 (410)
T ss_dssp CGGGCCTTCCSCCCSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCccccccccCCHHHHHHHHHHHHHcCCCEEEEeccccCCcccccccccccccccCccchhHHHHHHHHHHHHHHhc
Confidence 64 213 899999999999999999999997 420 03577999999999999
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 699 GHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 699 g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
|+++.|++|+|++|++++|+++++.|+++++.|||||++ +++.+++|++++++||++||++.+.. .+..+++.
T Consensus 216 G~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE~P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~-----~~~~~i~~ 290 (410)
T 2gl5_A 216 GDDADIIVEIHSLLGTNSAIQFAKAIEKYRIFLYEEPIHPLNSDNMQKVSRSTTIPIATGERSYTRW-----GYRELLEK 290 (410)
T ss_dssp CSSSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEECSSCSSCHHHHHHHHHHCSSCEEECTTCCTTH-----HHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCeEECCCChhhHHHHHHHHhhCCCCEEecCCcCCHH-----HHHHHHHc
Confidence 999999999999999999999999999999999999998 78999999999999999999999875 36666654
Q ss_pred -CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccc
Q 041113 777 -GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGT 855 (983)
Q Consensus 777 -~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~ 855 (983)
.+|++++|++++||++++++++++|+++|+++++|++ +|+|++++++|++++++|+. . .+.. ...
T Consensus 291 ~~~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~h~~-~s~i~~aa~~hlaaa~~~~~--~---~e~~-------~~~- 356 (410)
T 2gl5_A 291 QSIAVAQPDLCLCGGITEGKKICDYANIYDTTVQVHVC-GGPVSTVAALHMETAIPNFI--I---HEHH-------TNA- 356 (410)
T ss_dssp TCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEECCCCC-SSHHHHHHHHHHHHHCTTBC--C---EEEE-------TTT-
T ss_pred CCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeecCC-CCHHHHHHHHHHHHhCCcce--e---eeec-------ccc-
Confidence 4799999999999999999999999999999888776 69999999999999999641 1 0100 000
Q ss_pred hhcccccCCCCCceeec----cCCCCeeeEEecchhhhhhhcccc
Q 041113 856 YQWLKEDVTTDPISICH----NSCRGFVEASVAKATHILQNLQIN 896 (983)
Q Consensus 856 ~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~ 896 (983)
...+..|++.+|+.+++ +|++||||+++| ++.++++.+.
T Consensus 357 ~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d--~~~l~~~~~~ 399 (410)
T 2gl5_A 357 MKASIRELCTHDYQPENGYYVAPEQPGLGQELN--DEVVKEYLAY 399 (410)
T ss_dssp TCHHHHTTBSSCCCCBTTEECCCCSSBTSCCBC--HHHHTTTEEE
T ss_pred ccchHHHhccCCceecCCEEECCCCCcCCcccC--HHHHHhcccc
Confidence 11235677777888874 899999999999 8887776643
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-53 Score=508.06 Aligned_cols=396 Identities=11% Similarity=0.100 Sum_probs=316.7
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.|++||+.|.+ ++|||||+||.|++..+.... ..+........ .+.+.++++.+++++
T Consensus 145 ~~~~~i~~A~~~A~~-~~GPV~l~iP~dv~~~~~~~~---------------~~~~~~~~~~~--~~~~~~~~~~i~~~~ 206 (603)
T 4feg_A 145 TLPHVIDEAIRRAYA-HQGVAVVQIPVDLPWQQIPAE---------------DWYASANSYQT--PLLPEPDVQAVTRLT 206 (603)
T ss_dssp THHHHHHHHHHHHHH-HTSEEEEEEETTGGGSEEETT---------------TCCCCGGGCCC--CCCCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CCCCEEEEeChhhhhccCCcc---------------cccccccccCC--CCCCCCCHHHHHHHH
Confidence 478999999999998 689999999999765432110 00000000000 012356778899999
Q ss_pred HHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 81 ELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
++|++||||+|++|+|+ .++.+++.+|||++++||++|++ | ||+||++||++ +|.+|..++..++..+++
T Consensus 207 ~~l~~A~rPvIl~G~g~-~~a~~~l~~lae~~~~PV~~t~~-g------kg~~~~~hp~~--~G~~g~~~~~~~~~~l~~ 276 (603)
T 4feg_A 207 QTLLAAERPLIYYGIGA-RKAGKELEQLSKTLKIPLMSTYP-A------KGIVADRYPAY--LGSANRVAQKPANEALAQ 276 (603)
T ss_dssp HHHHHCSSEEEEECGGG-TTCHHHHHHHHHHHTCCEEECGG-G------TTSSCTTCTTB--CCCCSSSSCHHHHHHHHH
T ss_pred HHHhcCCCeEEEECCCc-hhHHHHHHHHHHHHCCCEEEcCc-c------ccCCCCCChhh--cccCcccCcHHHHHHHHh
Confidence 99999999999999998 45678999999999999999998 5 89999999995 788888777777778899
Q ss_pred CCEEEEeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 239 (983)
||+||+||++++. ..|...+.+ .++||||+|+.++++++.+++.+++|++.+|++|.+.+.......|.+.+.+..
T Consensus 277 aDlvl~iG~~~~~---~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 353 (603)
T 4feg_A 277 ADVVLFVGNNYPF---AEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANV 353 (603)
T ss_dssp CSEEEEESCCCTT---TTTTTTTTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHTCCCCCCCHHHHHHHHHH
T ss_pred CCEEEEECCCCCc---ccccccCCCCCeEEEEeCCHHHhCCccCCCEEEEeCHHHHHHHHHHhhhccCChHHHHHHHHHH
Confidence 9999999999963 223333443 579999999999999999999999999999999999876655567887776555
Q ss_pred HHHHHHHHhhh-cccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEee
Q 041113 240 MMVASEISFQI-CADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAG 318 (983)
Q Consensus 240 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 318 (983)
+.+........ ..+.++++..+++.|.+.++++++++.|.|+ +.+|..+++.+ ..|++|+ .++
T Consensus 354 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~G~----~~~~~~~~~~~-~~~~~~~-----------~~~ 417 (603)
T 4feg_A 354 KNWRAYLASLEDKQEGPLQAYQVLRAVNKIAEPDAIYSIDVGD----INLNANRHLKL-TPSNRHI-----------TSN 417 (603)
T ss_dssp HHHHHHHHHHHTCCSSBCCHHHHHHHHHHHCCTTCEEEECSSH----HHHHHHHHCCC-CTTCEEE-----------CCC
T ss_pred HHHHHHhhhhhcCCCCCcCHHHHHHHHHHhCCCCCEEEECCch----HHHHHHHhcee-CCCCcee-----------cCc
Confidence 55444332211 2356799999999999999999999999998 66676665553 4444443 356
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
++|+||+ ++|+|+|++++. +++||+++|||||+|+++||+|+++ +++|+++||+||++|++++..+. ..
T Consensus 418 ~~g~~G~--~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~~l~~a~~--~~lp~~~vv~nN~~~~~~~~~~~------~~ 487 (603)
T 4feg_A 418 LFATMGV--GIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQ--YHLPVINVVFTNCQYGFIKDEQE------DT 487 (603)
T ss_dssp SSCCTTC--HHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHH--TTCCCEEEEEECSBCHHHHHHHH------HH
T ss_pred ccccccc--hhHHHhhHHHhCCCCcEEEEeccHHHhhhHHHHHHHHH--HCcCeEEEEEECCchHHHHHHHH------Hh
Confidence 7899999 999999999999 8999999999999999999999999 99999999999999999765311 11
Q ss_pred ccc-ccccC-CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh--ccCCCEEEEEEcCcc
Q 041113 398 LDQ-YFYTT-HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQ--HLGTDRVIEVESCID 453 (983)
Q Consensus 398 ~~~-~~~~~-~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~--~~~~p~lIeV~~~~~ 453 (983)
+.. .+.+. +.+||.++|++||+++++|++.++|+++|++++ +.+||+||||.+++.
T Consensus 488 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~~~gP~lIev~~~~~ 547 (603)
T 4feg_A 488 NQNDFIGVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQHEPVLIDAVITGD 547 (603)
T ss_dssp CSSCCCSSBCCCCCHHHHHHHTTCEEEEECBGGGHHHHHHHHHHHTTTSCEEEEEECCCC
T ss_pred cCCCcccCcCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHHhcCCCcEEEEEEeCCC
Confidence 122 33333 578999999999999999999999999999999 889999999999764
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-53 Score=504.68 Aligned_cols=396 Identities=13% Similarity=0.112 Sum_probs=312.5
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+++.+++|++.|.++|||||||+||+|.+..+... ...+.... . +.+.++.+.++++++
T Consensus 144 ~~~~i~~A~~~A~~~r~GPV~l~iP~dv~~~~~~~---------------~~~~~~~~---~---~~~~~~~~~i~~~~~ 202 (566)
T 1ozh_A 144 LAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGPVSG---------------KVLPASGA---P---QMGAAPDDAIDQVAK 202 (566)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEEEEHHHHHSCEEE---------------CCCCCCCS---C---EECCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeChhhhhccccc---------------cccccccc---c---CCCCCCHHHHHHHHH
Confidence 67899999999999999999999999842111100 00000000 0 012345678999999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhcc-ccccccchhhhccCccccccC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQ-NILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp-~~~~~g~~g~~~~~~~~~~~~ 159 (983)
+|++||||+|++|+++. .++.+++.+|||++|+||++|++ + ||.+|++|| ++ +|.+|..++..++..++
T Consensus 203 ~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~-~------kg~~~~~~p~~~--~G~~g~~~~~~~~~~l~ 273 (566)
T 1ozh_A 203 LIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQ-A------AGAVNQDNFSRF--AGRVGLFNNQAGDRLLQ 273 (566)
T ss_dssp HHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEEECGG-G------TTTCCTTTCTTE--EEECSSBTTCHHHHHHH
T ss_pred HHHcCCCeEEEECCCcccccHHHHHHHHHHHHCCCEEEccc-c------CCcCCCCChHhh--cCCCcccCCHHHHHHHH
Confidence 99999999999999975 55678999999999999999998 5 799999999 85 78888777766777888
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCC-ChhHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHR-SSKWCSFLRAL 238 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~-~~~w~~~~~~~ 238 (983)
+||+||++|+.+.+..+..|. ..+.++||||.|+.+++++++.++.+.+|++.++++|.+.+.... ...|.+++...
T Consensus 274 ~aDlvl~lG~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~ 351 (566)
T 1ozh_A 274 LADLVICIGYSPVEYEPAMWN--SGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNIDHRLVLSPQAAEILRD 351 (566)
T ss_dssp HCSEEEEESCCGGGSCGGGTC--CSCSEEEEEESSCCCCBTTBCCSEEEESCHHHHHHHHHHTCCSCCCCCHHHHHHHHH
T ss_pred hCCEEEEECCCCCcCCccccC--CCCCcEEEEeCCHHHhCCCCCCCEEEEeCHHHHHHHHHHhccccCCcHHHHHHHHHH
Confidence 999999999976443333232 124579999999999999999999999999999999998765432 35688777655
Q ss_pred HHHHHHHHHhhh-cccCC-CCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeE
Q 041113 239 DMMVASEISFQI-CADYS-LTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRV 316 (983)
Q Consensus 239 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 316 (983)
++.......... ..+.+ +++..+++.|.+.++++++++.|+|+ +.+|..+++.. ..|++|+ .
T Consensus 352 ~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~l~~~~iv~~d~G~----~~~~~~~~~~~-~~~~~~~-----------~ 415 (566)
T 1ozh_A 352 RQHQRELLDRRGAQLNQFALHPLRIVRAMQDIVNSDVTLTVDMGS----FHIWIARYLYT-FRARQVM-----------I 415 (566)
T ss_dssp HHHHHHHHHC-CCCCCCSSBCHHHHHHHHHHHCCTTEEEEECSSH----HHHHHHHTGGG-CCCSEEE-----------C
T ss_pred HHHhHhhhhhccccCCCCCcCHHHHHHHHHHhCCCCCEEEEcCcH----HHHHHHHhccc-CCCCeEE-----------e
Confidence 544332221111 12345 99999999999999999999999998 55666555543 4454444 3
Q ss_pred eecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCc
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEP 395 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~ 395 (983)
+.++|+||+ ++|+|+|+++|. +++||+++|||+|+|+++||+|+++ +++|+++||+||++|++++.++.
T Consensus 416 ~~g~g~mG~--~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~--~~l~~~ivv~nN~~~~~~~~~~~------ 485 (566)
T 1ozh_A 416 SNGQQTMGV--ALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVR--LKANVLHLIWVDNGYNMVAIQEE------ 485 (566)
T ss_dssp CCTTCCTTC--HHHHHHHHHHHSTTSEEEEEEEHHHHHHHTTHHHHHHH--HTCCEEEEEEECSBCHHHHHHHH------
T ss_pred CCCcccccc--hHHHHHHHHHhCCCCCEEEEEcChHHhccHHHHHHHHH--hCCCcEEEEEECCchhHHHHHHH------
Confidence 467899999 999999999998 8999999999999999999999999 99999999999999999976421
Q ss_pred ccccccc-ccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 396 RILDQYF-YTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 396 ~~~~~~~-~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
..++..+ .+..++||.++|++||+++++|++.+||+++|+++++.++|.||||.+++.++
T Consensus 486 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~liev~~~~~~~ 546 (566)
T 1ozh_A 486 KKYQRLSGVEFGPMDFKAYAESFGAKGFAVESAEALEPTLRAAMDVDGPAVVAIPVDYRDN 546 (566)
T ss_dssp HHHSSCCSCBCCCCCHHHHHHTTTSEEEECCSGGGHHHHHHHHHHSSSCEEEEEEBCCTTH
T ss_pred HhcCCCccCcCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCCcC
Confidence 1122222 23456999999999999999999999999999999988999999999999876
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-53 Score=484.08 Aligned_cols=354 Identities=19% Similarity=0.187 Sum_probs=287.7
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHH--HHHHHHH-HHHhHhc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLL--DAEEQLR-FLLHFMT 569 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~--~~~~~l~-~~~~~l~ 569 (983)
|||++|+++.+++|++.||.++. ++.++|+|+|+ |++||||+.+.++..++.. .+...++ .++|.|+
T Consensus 3 mkI~~i~~~~~~~pl~~p~~~s~---------~~~~~V~v~td-G~~G~GE~~~~~~~~~~~~~~~~~~~i~~~l~~~l~ 72 (401)
T 2hzg_A 3 LKIDAVDLFYLSMPEVTDAADGS---------QDALLVRVAAG-GHIGWGECEAAPLPSIAAFVCPKSHGVCRPVSDSVL 72 (401)
T ss_dssp CBEEEEEEEEEECSSCCSSSCGG---------GEEEEEEEEET-TEEEEEEECSCHHHHHHHHHCCCSBTTBCCGGGGTT
T ss_pred CEEEEEEEEEEeccCCCcccccc---------ceEEEEEEEeC-CcEEEEeeecccCCcccchhHHHHHHHHHHHHHHhC
Confidence 89999999999999999998765 56899999999 9999999987642223221 1222344 3778899
Q ss_pred cCcccccccccccCchhhhh-hhcCCCCCcchhh--HHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEE
Q 041113 570 GAKISYFLPLLKGSFSSWIW-STLGIPACEIFPS--VRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKI 646 (983)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~ 646 (983)
|+ +.++...+.. ...+ ...+ ....++ |++|||+||||+.||.+|+|||+||||.. +++||+
T Consensus 73 G~-~~~~~~~l~~---~~~~~~~~g---~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~---------~~~vp~ 136 (401)
T 2hzg_A 73 GQ-RLDGPDDIAR---IAALVGYNS---MDLLQAPHMLSGIEMALWDLLGRRLSAPAWALLGYSA---------SHGKRP 136 (401)
T ss_dssp TC-BCSSHHHHHH---HHHHHHHHT---TTCTTHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCSC---------CCCBEE
T ss_pred CC-CCCHHHHHHH---HHHhhccCC---ccchhhHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCC---------CCceEe
Confidence 98 6654321110 0000 0011 013567 99999999999999999999999999975 467999
Q ss_pred EEeecCCCCHHHHHHHHHHhhhcCCCEEEEe---ccCCCCh-HHHHHHHHHHHHHcCCCcEEEEEcCCCC--CHHHHHHH
Q 041113 647 CALIDSNKSPVEVASIATTLVEEGFTAIKLK---VARRADP-IKDAEVIQEVRKKVGHRIELRVDANRNW--TYQEALEF 720 (983)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiK---ig~~~~~-~~d~~~v~~vr~~~g~~~~l~vDaN~~~--~~~~a~~~ 720 (983)
|+++....+++++.+.+++++++||++||+| +|. ++ +.|+++|++||+++|+++.|++|+|++| |.++|+++
T Consensus 137 ~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~spvG~--~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~~~a~~~ 214 (401)
T 2hzg_A 137 YASLLFGDTPQETLERARAARRDGFAAVKFGWGPIGR--GTVAADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAAR 214 (401)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHTTCSEEEEESTTTTS--SCHHHHHHHHHHHHHHHCSSSEEEEECTTTTTTCHHHHHTT
T ss_pred eEEcCCCCCHHHHHHHHHHHHHhCCCeEEEcCCCCCC--CHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCCHHHHHHH
Confidence 9876545689999999999999999999999 986 67 8999999999999999999999999999 99999999
Q ss_pred HhhcccCCCceeecCCC--ChHHHHHHHh-hcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHH
Q 041113 721 GFLIKDCDLQYIEEPVQ--NEEDIIKYCE-ESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGL 796 (983)
Q Consensus 721 ~~~l~~~~i~~iEeP~~--~~~~~~~l~~-~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~ 796 (983)
++.|+++++.|||||++ +++.+++|++ ++++||++||++.+.. .+..+++ ..+|++++|++++||++++++
T Consensus 215 ~~~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~~iPI~~dE~~~~~~-----~~~~~i~~~~~d~v~ik~~~~GGit~~~~ 289 (401)
T 2hzg_A 215 LPTLDAAGVLWLEEPFDAGALAAHAALAGRGARVRIAGGEAAHNFH-----MAQHLMDYGRIGFIQIDCGRIGGLGPAKR 289 (401)
T ss_dssp HHHHHHTTCSEEECCSCTTCHHHHHHHHTTCCSSEEEECTTCSSHH-----HHHHHHHHSCCSEEEECHHHHTSHHHHHH
T ss_pred HHHHHhcCCCEEECCCCccCHHHHHHHHhhCCCCCEEecCCcCCHH-----HHHHHHHCCCCCEEEeCcchhCCHHHHHH
Confidence 99999999999999998 7889999999 8999999999999865 3555554 457999999999999999999
Q ss_pred HHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceee-c---
Q 041113 797 IARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISIC-H--- 872 (983)
Q Consensus 797 ~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~-~--- 872 (983)
++++|+++|++++.| ++||++++++++|++++++|.. . .+++ ..+ .. +.+|++.+|+.++ +
T Consensus 290 i~~~A~~~g~~~~~h-~~es~i~~~a~~hlaaa~~~~~--~---~e~~------~~~--~~-~~~d~~~~~~~~~~~G~~ 354 (401)
T 2hzg_A 290 VADAAQARGITYVNH-TFTSHLALSASLQPFAGLEADR--I---CEYP------AAP--QQ-LALDITGDHIRPDAEGLI 354 (401)
T ss_dssp HHHHHHHHTCEEEEC-CCSCHHHHHHHHGGGTTCTTCC--E---EEEE------SSC--CH-HHHHTBSSCCCCCTTSCB
T ss_pred HHHHHHHcCCEEecC-CCCcHHHHHHHHHHHHhCCCce--e---eecc------CCc--ch-HHHHhccCCceeccCCeE
Confidence 999999999998866 9999999999999999998631 1 1111 111 12 4677877888877 4
Q ss_pred -cCCCCeeeEEecchhhhhhhcccc
Q 041113 873 -NSCRGFVEASVAKATHILQNLQIN 896 (983)
Q Consensus 873 -~P~~pGlGv~~d~a~~~~~~~~~~ 896 (983)
+|++||||+++| ++.++++.+.
T Consensus 355 ~~p~~PGlGv~~d--~~~l~~~~~~ 377 (401)
T 2hzg_A 355 RAPEAPGLGLQVA--ASALRRYLVE 377 (401)
T ss_dssp CSCSSSBTSCCBC--HHHHHHHBCC
T ss_pred ECCCCCcCCceEC--HHHHHhhhcc
Confidence 899999999999 8888887754
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-52 Score=477.04 Aligned_cols=351 Identities=16% Similarity=0.139 Sum_probs=281.8
Q ss_pred ccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhc
Q 041113 490 LSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMT 569 (983)
Q Consensus 490 ~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~ 569 (983)
|..|||++|+++.+. |+ . + .++|+|+|++| +||||+ +.. .+...+...++.+.|.|+
T Consensus 3 ~~~MkI~~i~~~~~~-~~--------~--------~-~v~V~v~td~G-~G~Ge~-~~g---~~~~~~~~~i~~l~p~li 59 (410)
T 2qq6_A 3 LSAPRITRVETAAIR-AV--------G--------P-SVLVRVWAGDE-HGLGEC-YPS---APAAGIHHIVMNMEEQLL 59 (410)
T ss_dssp -CCCCCCEEEEEEEC-CC-----------------C-EEEEEEEETTE-EEEEEE-CCC---SCHHHHHHHHHTTHHHHT
T ss_pred CCCceEeEEEEEEEC-CC--------C--------C-EEEEEEEECCc-EEEEEe-cCC---CChHHHHHHHHHHHHHhC
Confidence 455899999999885 22 0 1 48999999999 999999 532 233445566667899999
Q ss_pred cCcccccccccccCchhhhhhhc-CC-CCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEE
Q 041113 570 GAKISYFLPLLKGSFSSWIWSTL-GI-PACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKIC 647 (983)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~ 647 (983)
|+++.+++.++..+. ... +. ...+...+|++|||+||||++||.+|+|||+||||.. +++||+|
T Consensus 60 G~d~~~~~~i~~~l~-----~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg~~---------~~~vp~y 125 (410)
T 2qq6_A 60 GEDPRDVERLYEKMR-----RWNIFTGGQAGAVITALSGIETALWDLAGKLQGVPVYRLLGGAF---------RRRVRLY 125 (410)
T ss_dssp TCCTTCHHHHHHHHH-----HHTTTTTSSSSHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCS---------CSEEEEE
T ss_pred CCCccHHHHHHHHHH-----HhhhcccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHcCCCc---------cCceeEE
Confidence 999887665543221 111 10 1234467899999999999999999999999999975 4789999
Q ss_pred EeecCC-C---------------CHHHHHHHHHHhhhcCCCEEEEec----cCC-----------CChHHHHHHHHHHHH
Q 041113 648 ALIDSN-K---------------SPVEVASIATTLVEEGFTAIKLKV----ARR-----------ADPIKDAEVIQEVRK 696 (983)
Q Consensus 648 ~~~~~~-~---------------~~~~~~~~~~~~~~~G~~~~KiKi----g~~-----------~~~~~d~~~v~~vr~ 696 (983)
+++..+ . +++++.+.+++++++||++||+|+ |.. .+++.|+++|++||+
T Consensus 126 ~~~~~g~~~h~~~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~vKik~~~~~G~~~~~~~G~~~~~~~~~~~~e~v~avRe 205 (410)
T 2qq6_A 126 ADCNAGTVDAAAHHIEGGLFEEGSNEEYIAVAREAVERGFDAIKLDVDDITGPLHRDFWNGAISPREHEAMVARVAAVRE 205 (410)
T ss_dssp EECCCSEECTTCCEEECCTTCSTHHHHHHHHHHHHHHTTCSEEEEECCCSSSTTCSCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred EeccccccccccccccccccccCCHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCcCccccchhhHHHHHHHHHHHHH
Confidence 876311 2 789999999999999999999999 531 035789999999999
Q ss_pred HcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhc
Q 041113 697 KVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA 774 (983)
Q Consensus 697 ~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~ 774 (983)
++|+++.|++|+|++||+++|+++++.|+++++.|||||++ +++.+++|++++++||++||++.+.. .+..++
T Consensus 206 a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~-----~~~~~i 280 (410)
T 2qq6_A 206 AVGPEVEVAIDMHGRFDIPSSIRFARAMEPFGLLWLEEPTPPENLDALAEVRRSTSTPICAGENVYTRF-----DFRELF 280 (410)
T ss_dssp HHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECCSCTTCHHHHHHHHTTCSSCEEECTTCCSHH-----HHHHHH
T ss_pred hcCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCeEECCCChhhHHHHHHHHhhCCCCEEeCCCcCCHH-----HHHHHH
Confidence 99999999999999999999999999999999999999998 78899999999999999999999865 366666
Q ss_pred CC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCc
Q 041113 775 HP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGL 853 (983)
Q Consensus 775 ~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~ 853 (983)
+. .+|++++|++++||++++++++++|+++|+++++|++ .++|++++++|++++++|+. . .++ . ..
T Consensus 281 ~~~~~d~v~ik~~~~GGite~~~ia~~A~~~g~~~~~h~~-~s~i~~aa~~hlaaa~~~~~--~---~e~--~-----~~ 347 (410)
T 2qq6_A 281 AKRAVDYVMPDVAKCGGLAEAKRIANLAELDYIPFAPHNV-SSPVGTVAAAHVCAAVSNFA--V---LEW--H-----AI 347 (410)
T ss_dssp HTTCCSEECCBHHHHTHHHHHHHHHHHHHTTTCCBCCBCC-SCHHHHHHHHHHHHSCTTBC--C---EEE--C-----CT
T ss_pred HcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeecCC-CcHHHHHHHHHHHHhCCCce--e---eec--c-----cc
Confidence 54 4799999999999999999999999999999888776 59999999999999999641 1 111 0 01
Q ss_pred cchhcccccCCC--CCceeec----cCCCCeeeEEecchhhhhhhccccccc
Q 041113 854 GTYQWLKEDVTT--DPISICH----NSCRGFVEASVAKATHILQNLQINNDV 899 (983)
Q Consensus 854 ~~~~~~~~d~~~--~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~~~~ 899 (983)
+ ..+..|++. +|+.+++ +|++||||+++| ++.++++.+....
T Consensus 348 ~--~~~~~d~~~~~~~~~~~~G~i~~p~~PGlGv~~d--~~~l~~~~~~~~~ 395 (410)
T 2qq6_A 348 D--MPHWEDFVRYPGGPVIREGHIELTEEPGLGLELD--EEAAFEHRHEKGG 395 (410)
T ss_dssp T--CTTGGGGBCCSSSSSEETTEEECCSSSGGGCCBC--HHHHHTTBCC--C
T ss_pred c--chhhhhhcccCCCceeeCCEEECCCCCCCCceeC--HHHHHhccccCcc
Confidence 1 123457776 7888874 899999999999 8888888765433
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-52 Score=470.78 Aligned_cols=353 Identities=15% Similarity=0.117 Sum_probs=285.2
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHH-HHhHhccC
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRF-LLHFMTGA 571 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~-~~~~l~g~ 571 (983)
|||++|+++.+++||+.||.++.+.+ ..++.++|+|+|++|++||||+.+...+..+.+.+...++. +.|.++|+
T Consensus 3 mkI~~i~~~~~~~pl~~p~~~~~~~~----~~~~~v~V~v~td~G~~G~GE~~~~g~~~~~~~~~~~~i~~~l~p~l~G~ 78 (389)
T 2oz8_A 3 LSLSHFRITRFQFARDRVIGDSQVRA----DDVNVAALELVSESGEVGLGFIQTLFNPLPDQQEIESVFEHEVWPSLKGN 78 (389)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSCEE----EEEEEEEEEEEETTSCEEEEEEEESSSCCCCHHHHHHHHHHHTHHHHTTS
T ss_pred CEEEEEEEEEEEeccCCceeccccee----cccceEEEEEEECCCCEEEEEeccCCCccccHHHHHHHHHHHHHHHHcCC
Confidence 89999999999999999999887654 34899999999999999999998743210012334455554 78999999
Q ss_pred cccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeec
Q 041113 572 KISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALID 651 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~ 651 (983)
++.++ +..... ...+. .....++|++|||+||||++||.+|+|||+||||.+ ++||+|++.+
T Consensus 79 d~~~~---~~~~~~----~~~~~-~~~l~~~a~~aid~AlwDl~~k~~g~Pl~~lLGg~~----------~~vp~y~~~~ 140 (389)
T 2oz8_A 79 RAIAL---VHRVNR----PRGGN-QRAYSLPFHEAVQVALWDLAAKEAGLPLHVLLGSRR----------NRVKAYASGL 140 (389)
T ss_dssp CHHHH---TTCCCC----CC-------CCSCCHHHHHHHHHHHHHHHHTSBHHHHTTCSC----------SEEEEEEECC
T ss_pred CHHHH---HHHHhc----cCCCc-cchhhHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCC----------CceEEEEeCC
Confidence 87754 111000 00000 001146799999999999999999999999999975 6799998753
Q ss_pred C-CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhccc--CC
Q 041113 652 S-NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD--CD 728 (983)
Q Consensus 652 ~-~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~--~~ 728 (983)
. ..+++++.+.+++++++||++||+|+|. .+++.|+++|++||+++|+++.|++|+|++||.++|+++++.|++ ++
T Consensus 141 ~~~~~~~~~~~~a~~~~~~Gf~~vKik~g~-~~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~~ 219 (389)
T 2oz8_A 141 DFHLDDDAFVSLFSHAASIGYSAFKIKVGH-RDFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGHD 219 (389)
T ss_dssp BTTCCHHHHHHHHHHHHHTTCCEEEEECCC-SSHHHHHHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCC
T ss_pred CcCCCHHHHHHHHHHHHHhCCCEEEEccCC-CCHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence 2 2389999999999999999999999996 378999999999999999999999999999999999999999999 99
Q ss_pred CceeecCCC--ChHHHHHHHhhc-CCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHc
Q 041113 729 LQYIEEPVQ--NEEDIIKYCEES-GLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRH 804 (983)
Q Consensus 729 i~~iEeP~~--~~~~~~~l~~~~-~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~ 804 (983)
+.|||||++ +++.+++|++++ ++||++||++ +.. .+..+++.+ +|++++| ||++++++++++|+++
T Consensus 220 i~~iEqP~~~~~~~~~~~l~~~~~~iPIa~dE~~-~~~-----~~~~~i~~~~~d~v~ik----GGit~a~~i~~~A~~~ 289 (389)
T 2oz8_A 220 LLWVEDPILRHDHDGLRTLRHAVTWTQINSGEYL-DLQ-----GKRLLLEAHAADILNVH----GQVTDVMRIGWLAAEL 289 (389)
T ss_dssp CSEEESCBCTTCHHHHHHHHHHCCSSEEEECTTC-CHH-----HHHHHHHTTCCSEEEEC----SCHHHHHHHHHHHHHH
T ss_pred ceEEeCCCCCcCHHHHHHHHhhCCCCCEEeCCCC-CHH-----HHHHHHHcCCCCEEEEC----cCHHHHHHHHHHHHHc
Confidence 999999998 788999999999 9999999999 875 356666544 7999999 9999999999999999
Q ss_pred CCcEEeC-CCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCee
Q 041113 805 GKMAVVS-AAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFV 879 (983)
Q Consensus 805 gi~~~~~-~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGl 879 (983)
|+++++| ++.+ +++|++++++|+. . . +...++..|++.+|+.+++ +|++|||
T Consensus 290 gi~~~~~~~~~e------a~lhlaaa~~~~~--~---~------------e~~~~~~~~~~~~~~~~~~G~~~~p~~PGl 346 (389)
T 2oz8_A 290 GIPISIGNTFLE------AGVHMAVALPEVE--W---L------------EYSFQNFDHLVEQPIEIRDGYAYAPDRPGH 346 (389)
T ss_dssp TCCEEECCCGGG------TTHHHHHHSTTEE--E---E------------EECCCSCGGGBSSCCCEETTEEECCSSSBT
T ss_pred CCeEeecccHHH------HHHHHHhcCCCCc--e---e------------ecchHHHhhhccCCceEECCEEECCCCCcC
Confidence 9999999 6655 8899999998631 1 0 0112345677778888874 8999999
Q ss_pred eEEecchhhhhhhccccccccccc
Q 041113 880 EASVAKATHILQNLQINNDVICKT 903 (983)
Q Consensus 880 Gv~~d~a~~~~~~~~~~~~~i~~~ 903 (983)
|+++| ++.++++.+.....+..
T Consensus 347 Gv~~d--~~~l~~~~~~~~~~~~~ 368 (389)
T 2oz8_A 347 GLVLS--EKARGEWSRPRRLARSE 368 (389)
T ss_dssp SCCBC--HHHHHHSBCCSCCCGGG
T ss_pred CCccC--HHHHHhhccccccccee
Confidence 99999 88999988776555443
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-52 Score=474.32 Aligned_cols=351 Identities=15% Similarity=0.134 Sum_probs=280.8
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEee-cCcCcCcccHHHHHHHHHHHHhHhccC
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEV-APLEIHKENLLDAEEQLRFLLHFMTGA 571 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~-~~~~~~~~~~~~~~~~l~~~~~~l~g~ 571 (983)
|||++|+++.+..|...| ...++|+|+|++|++||||+ .+... +...+...++.+.|.|+|+
T Consensus 3 MkI~~i~~~~~~~~~~~~--------------~~~v~V~v~td~G~~G~Ge~~~~~g~---~~~~~~~~i~~l~p~l~G~ 65 (403)
T 2ox4_A 3 LKITKIEIFHVHTRPQSG--------------QRPILVKVSTDEGIYGLGEAGIAYGV---GGSAAAGILKDYAALLIGE 65 (403)
T ss_dssp CCEEEEEEEEECCCTTTC--------------CCCEEEEEEETTSCEEEEEESCSSSS---CHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEEEEEecCCCCCC--------------ccceEEEEEeCCCCEEEEeecCCCCC---chHHHHHHHHHHHHHcCCC
Confidence 799999999986531111 12479999999999999999 54322 2334555666799999999
Q ss_pred cccccccccccCchhhhhhhcCC--CCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEe
Q 041113 572 KISYFLPLLKGSFSSWIWSTLGI--PACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICAL 649 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~ 649 (983)
++.+++.++..+. ..... ...+...+|++|||+||||++||.+|+|||+||||.. +++||+|++
T Consensus 66 d~~~~~~i~~~l~-----~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~---------~~~vp~y~~ 131 (403)
T 2ox4_A 66 DPFNTEAIWEKLF-----KKTFWGQGGGTVIFSGISAFDIAFWDIKGKALNLPVYKLLGGKN---------REDLRVYAS 131 (403)
T ss_dssp CTTCHHHHHHHHH-----HSSSGGGTCBHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCS---------SSSEEEEEE
T ss_pred CHHHHHHHHHHHH-----HhcccccCCcHHHHhHHHHHHHHHHHHhHhHcCCcHHHHcCCCC---------CCceeeeEe
Confidence 9887655543221 11100 1223457899999999999999999999999999975 467999987
Q ss_pred -ec-CCC-------CHHHHHHHHHHhhhcCCCEEEEec------cCC-----------CChHHHHHHHHHHHHHcCCCcE
Q 041113 650 -ID-SNK-------SPVEVASIATTLVEEGFTAIKLKV------ARR-----------ADPIKDAEVIQEVRKKVGHRIE 703 (983)
Q Consensus 650 -~~-~~~-------~~~~~~~~~~~~~~~G~~~~KiKi------g~~-----------~~~~~d~~~v~~vr~~~g~~~~ 703 (983)
+. +.. +++++.+.+++++++||+++|+|+ |.. .+++.|+++|++||+++|+++.
T Consensus 132 ~i~~g~~~~~~~~~~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~g~~~~~~~~~~~e~v~avr~avG~d~~ 211 (403)
T 2ox4_A 132 QLQFGWGKERKSKGRKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVERVEAIRNAVGPDVD 211 (403)
T ss_dssp CGGGCSSSSCCCCCSHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTCCCSSSCCHHHHHHHHHHHHHHHHHHCTTSE
T ss_pred eccCCccccccccCCHHHHHHHHHHHHHcCCCEEEEeccccCCccccccCcccCCCchHHHHHHHHHHHHHHHHhCCCCe
Confidence 64 213 899999999999999999999997 420 0357799999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceE
Q 041113 704 LRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVA 780 (983)
Q Consensus 704 l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~ 780 (983)
|++|+|++|++++|+++++.|+++++.|||||++ +++.+++|++++++||++||++.+.. .+..+++. .+|+
T Consensus 212 l~vDan~~~~~~~ai~~~~~l~~~~i~~iE~P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~-----~~~~~i~~~~~d~ 286 (403)
T 2ox4_A 212 IIVENHGHTDLVSAIQFAKAIEEFNIFFYEEINTPLNPRLLKEAKKKIDIPLASGERIYSRW-----GFLPFLEDRSIDV 286 (403)
T ss_dssp EEEECTTCSCHHHHHHHHHHHGGGCEEEEECCSCTTSTHHHHHHHHTCCSCEEECTTCCHHH-----HHHHHHHTTCCSE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCEEeCCCChhhHHHHHHHHHhCCCCEEecCCcCCHH-----HHHHHHHcCCCCE
Confidence 9999999999999999999999999999999998 78999999999999999999999864 36666654 4799
Q ss_pred EEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhccc
Q 041113 781 IVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLK 860 (983)
Q Consensus 781 i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 860 (983)
+++|++++||++++++++++|+++|+++++|++ +|+|++++++|++++++|+. . .++ ... ....+.
T Consensus 287 v~ik~~~~GGite~~~i~~~A~~~g~~~~~h~~-~s~i~~aa~~hlaaa~~~~~--~---~e~-------~~~-~~~~~~ 352 (403)
T 2ox4_A 287 IQPDLGTCGGFTEFKKIADMAHIFEVTVQAHVA-GTGVAEAASLHAEIAIPNFC--I---HEH-------HQK-TLLPEY 352 (403)
T ss_dssp ECCCHHHHTHHHHHHHHHHHHHHTTCEECCCCC-SCHHHHHHHHHHHHTCSSBC--C---EEE-------EGG-GGSHHH
T ss_pred EecCccccCCHHHHHHHHHHHHHcCCEEeecCC-CCHHHHHHHHHHHHhCCCcc--e---eee-------ccc-cccchH
Confidence 999999999999999999999999999988776 59999999999999998641 1 000 000 011235
Q ss_pred ccCCCCCceeec----cCCCCeeeEEecchhhhhhhccc
Q 041113 861 EDVTTDPISICH----NSCRGFVEASVAKATHILQNLQI 895 (983)
Q Consensus 861 ~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~ 895 (983)
.|++.+|+.+++ +|++||||+++| ++.++++..
T Consensus 353 ~d~~~~~~~~~~G~~~~p~~PGlGv~~d--~~~l~~~~~ 389 (403)
T 2ox4_A 353 EELCVHNYQPVKGRYKVPELPGIGQDIT--EKLYQISDY 389 (403)
T ss_dssp HTTBSCCCCCBTTEECCCCSSBTSCCBC--GGGGTSEEE
T ss_pred HHhccCCceecCCEEECCCCCCCCcccC--HHHHHhccc
Confidence 677777888874 899999999999 777776654
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=495.43 Aligned_cols=397 Identities=13% Similarity=0.075 Sum_probs=314.4
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++++++||+.|.++||||||| ||.|++...... ..++......+.+.+. .++.+.+++++
T Consensus 138 ~~~~~i~~A~~~A~~~~~GPV~l-iP~dv~~~~~~~----------------~~~~~~~~~~~~~~~~-~~~~~~i~~~~ 199 (590)
T 1v5e_A 138 QLPKLVDEAARMAIAKRGVAVLE-VPGDFAKVEIDN----------------DQWYSSANSLRKYAPI-APAAQDIDAAV 199 (590)
T ss_dssp GHHHHHHHHHHHHHHTTSEEEEE-EETTGGGCEEEG----------------GGCCCCGGGCCCCCCC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceEEE-EccchhhcccCc----------------ccccccccccccCCCC-CCCHHHHHHHH
Confidence 36789999999999999999999 999964321100 0000000000000011 34557899999
Q ss_pred HHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 81 ELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
++|++||||+|++|+|+ .++.+++.+|||++++||++|++ | ||.||++||++ +|++|..++..++..+++
T Consensus 200 ~~l~~a~rpvil~G~g~-~~a~~~l~~lae~~~~Pv~~t~~-g------~g~~~~~~p~~--~G~~g~~g~~~~~~~l~~ 269 (590)
T 1v5e_A 200 ELLNNSKRPVIYAGIGT-MGHGPAVQELARKIKAPVITTGK-N------FETFEWDFEAL--TGSTYRVGWKPANETILE 269 (590)
T ss_dssp HHHHHCSSEEEEECGGG-TTCHHHHHHHHHHHTCCEEECTT-C------GGGSCTTCTTE--EEESSSSSCHHHHHHHHH
T ss_pred HHHHhCCCeEEEEcCch-hHHHHHHHHHHHHHCCCEEEccc-c------CcCCCCCChhh--CccCcccCCHHHHHHHHh
Confidence 99999999999999988 46678999999999999999997 6 89999999995 788887777777778899
Q ss_pred CCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~~ 240 (983)
||+||++|+++.+....+ ..++..++||||+|+.++++++..++.+.+|++.++++|.+.+.......|.+.+...++
T Consensus 270 aDlvl~iG~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~gd~~~~l~~L~~~l~~~~~~~w~~~~~~~~~ 347 (590)
T 1v5e_A 270 ADTVLFAGSNFPFSEVEG--TFRNVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVDAVEESAWWTANLKNIA 347 (590)
T ss_dssp CSEEEEESCCCTTTTTTT--TTTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHSCCCCCCHHHHHHHHHHH
T ss_pred CCEEEEECCCCcchhccc--cCCCCCeEEEEeCCHHHHCCCcCCCeEEEcCHHHHHHHHHHhhccCCcHHHHHHHHHHHH
Confidence 999999999997654110 012355799999999999999999999999999999999987754334578776655444
Q ss_pred HHHHHHHhhh--cccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEee
Q 041113 241 MVASEISFQI--CADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAG 318 (983)
Q Consensus 241 ~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 318 (983)
.+. ...... ..+.++++..+++.|.+.+|++++++.|+|+ +.+|..+++.+ ..|++|+ .+.
T Consensus 348 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~----~~~~~~~~~~~-~~~~~~~-----------~~~ 410 (590)
T 1v5e_A 348 NWR-EYINMLETKEEGDLQFYQVYNAINNHADEDAIYSIDVGN----STQTSIRHLHM-TPKNMWR-----------TSP 410 (590)
T ss_dssp HHH-HHHHHHHTCCSSBCCHHHHHHHHHHHSCTTCEEEECSSH----HHHGGGGTCCC-CTTSEEE-----------CCC
T ss_pred HhH-hhhhhcccCCCCCcCHHHHHHHHHhhCCCCCEEEECCch----HHHHHHHhccc-CCCCeEE-----------cCC
Confidence 332 111110 1245699999999999999999999999999 67777666664 4555544 246
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
++|+||+ ++|+|+|+++|. +++||+++|||+|+|++|||+|+++ +++|+++||+||++|+|++.++... .
T Consensus 411 ~~g~mG~--~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~--~~l~~~ivv~NN~~~~~~~~~q~~~-----~ 481 (590)
T 1v5e_A 411 LFATMGI--AIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVR--YNMPVINVVFSNTEYAFIKNKYEDT-----N 481 (590)
T ss_dssp SSCCTTC--HHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHH--TTCCCEEEEEECSSCTTGGGTTSSS-----C
T ss_pred CCCcccC--hHHHHHHHHHhCCCCeEEEEEechHHhchHHHHHHHHH--hCCCCEEEEEECCchHHHHHHHHHh-----c
Confidence 7899999 999999999998 8999999999999999999999999 9999999999999999998653221 1
Q ss_pred ccccccc-CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc---CCCEEEEEEcCccc
Q 041113 398 LDQYFYT-THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL---GTDRVIEVESCIDA 454 (983)
Q Consensus 398 ~~~~~~~-~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~---~~p~lIeV~~~~~~ 454 (983)
+++ +++ ..++||.++|++||+++++|++.+||.++|+++++. ++|+||||.+++.+
T Consensus 482 ~~~-~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~~~gp~liev~~~~~~ 541 (590)
T 1v5e_A 482 KNL-FGVDFTDVDYAKIAEAQGAKGFTVSRIEDMDRVMAEAVAANKAGHTVVIDCKITQDR 541 (590)
T ss_dssp CSC-CCCCCCCCCHHHHHHHTTSEEEEECBHHHHHHHHHHHHHHHHTTCCEEEEEECCSCC
T ss_pred CCC-ccccCCCCCHHHHHHHcCCEEEEECCHHHHHHHHHHHHHhcCCCCCEEEEEEecccc
Confidence 222 333 357999999999999999999999999999999877 99999999999887
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-53 Score=504.42 Aligned_cols=402 Identities=15% Similarity=0.166 Sum_probs=309.2
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.+++|++.|.++|||||||+||+|++..+...++. .+........ . +.. +...++.+.+++++
T Consensus 144 ~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~~~~----------~~~~~~~~~~-~-~~~-~~~~~~~~~v~~~~ 210 (573)
T 2iht_A 144 EITDLVDSAVNAAMTEPVGPSFISLPVDLLGSSEGIDTT----------VPNPPANTPA-K-PVG-VVADGWQKAADQAA 210 (573)
T ss_dssp GHHHHHHHHHHHHTBSSCCCEEEEEEHHHHTCCTTCC-------------CCCCCCCCS-S-CBE-EECTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEecchHhhhhhccccc----------CCccccccCC-C-Ccc-ccCCCCHHHHHHHH
Confidence 368899999999999999999999999965433100000 0000000000 0 000 00124567899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccch-----hhhccCcc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHL-----DHALLSES 154 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~-----g~~~~~~~ 154 (983)
++|++||||+|++|+++. .++.+++.+|||++|+||++|++ + ||+||++||++ +|.+ |..++..+
T Consensus 211 ~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~-~------~g~~~~~hp~~--~G~~~~~~~g~~~~~~~ 281 (573)
T 2iht_A 211 ALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYI-A------KGVLPVGHELN--YGAVTGYMDGILNFPAL 281 (573)
T ss_dssp HHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECST-T------TTSSCTTCTTE--EEECCTTHHHHHTSCHH
T ss_pred HHHHcCCCeEEEECCCccccCHHHHHHHHHHHHCCeEEEecc-c------CccCCCCCcCc--cCccccccCCCCCCHHH
Confidence 999999999999999875 44568999999999999999998 5 79999999995 6777 77777777
Q ss_pred ccccCCCCEEEEeCCc-cccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHH
Q 041113 155 VKDWIQFDVIIQIGSR-ITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCS 233 (983)
Q Consensus 155 ~~~~~~aDlvl~iG~~-~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~ 233 (983)
+..+++||+||+||++ +.+..+..|. ..++.++||||.|+.+++++++.++.+++|++.++++|.+.+.......| +
T Consensus 282 ~~~l~~aDlvl~iG~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~w-~ 359 (573)
T 2iht_A 282 QTMFAPVDLVLTVGYDYAEDLRPSMWQ-KGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASFGAKQR-H 359 (573)
T ss_dssp HHHHTTCCEEEEETCCGGGCCCHHHHC-CSSCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTTTCCCCCC-C
T ss_pred HHHHhhCCEEEEECCCccccccccccC-CCCCCeEEEEeCCHHHhCCCcCCCeeEeCCHHHHHHHHHHhccccCchhH-H
Confidence 7788999999999999 8777776664 21345799999999999999999999999999999999887654323455 4
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCC-----CceEEEecCcchhhhhhhcCCCcccccccccccccCC
Q 041113 234 FLRALDMMVASEISFQICADYSLTEPHVAHELSRALTS-----NSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSE 308 (983)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 308 (983)
.++..++..............++++..+++.|.+.+|+ +++++.|+|+ +.+|..++++. ++|++|+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iv~~d~G~----~~~~~~~~~~~-~~~~~~~---- 430 (573)
T 2iht_A 360 DIEPLRARIAEFLADPETYEDGMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGF----FRHYGVLFARA-DQPFGFL---- 430 (573)
T ss_dssp CCHHHHHHHHHHHTCCCCCSSSBCHHHHHHHHHHHHHHHSCTTCCEEEECSSH----HHHHHHHHCCC-CSTTSEE----
T ss_pred HHHHHHHHhhhhhhccccCcCCcCHHHHHHHHHHhcccccCCCCcEEEEcCcH----hHHHHHHhcCc-CCCCeEE----
Confidence 43333332221111111223579999999999999999 9999999999 55555554443 4454444
Q ss_pred CCCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCC
Q 041113 309 FPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLL 387 (983)
Q Consensus 309 ~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~ 387 (983)
.++++|+||+ ++|+|+|+++|. +++||+++|||+|+|+++||+|+++ +++|+++||+||++|++++.+
T Consensus 431 -------~~~g~g~mG~--~l~~AiGaa~a~~~~~vv~i~GDG~~~~~~~~L~~a~~--~~l~~~ivv~NN~~~~~~~~~ 499 (573)
T 2iht_A 431 -------TSAGCSSFGY--GIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLETIAR--LNLPIVTVVVNNDTNGLIELY 499 (573)
T ss_dssp -------CCSSSCCTTC--HHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHHHHHH--HTCCCEEEEEECSBCHHHHHH
T ss_pred -------cCCCCccccc--HHHHHHHHHHhCCCCcEEEEEccHHHHhHHHHHHHHHH--hCCCeEEEEEECCcchhhHHH
Confidence 2467899999 999999999998 8999999999999999999999999 999999999999999999764
Q ss_pred CCCCCCCccccccccc---cCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCc
Q 041113 388 PIADRTEPRILDQYFY---TTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCI 452 (983)
Q Consensus 388 ~~~~~~~~~~~~~~~~---~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~ 452 (983)
+.. .+...+. ...++||.++|++||+++++|++.+||+++|+++++.++|+||||.+++
T Consensus 500 ~~~------~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~ 561 (573)
T 2iht_A 500 QNI------GHHRSHDPAVKFGGVDFVALAEANGVDATRATNREELLAALRKGAELGRPFLIEVPVNY 561 (573)
T ss_dssp HHH------HHSSCCGGGTBCCCCCHHHHHHHTTCEEEECCSHHHHHHHHHHHHTSSSCEEEEEEBCC
T ss_pred HHH------hcCCCcCccccCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 211 0111011 1235899999999999999999999999999999988999999999998
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-52 Score=498.55 Aligned_cols=398 Identities=17% Similarity=0.197 Sum_probs=313.5
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCC---CCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFRE---PLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMA 77 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~---~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 77 (983)
++++.+++|++.|.++|||||||+||.|. ++.+... ..+... ... +...++.+.++
T Consensus 137 ~~~~~l~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~~~----------------~~~~~~--~~~---~~~~~~~~~v~ 195 (563)
T 2uz1_A 137 HIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSV----------------IIPDLV--LSA---HGARPDPADLD 195 (563)
T ss_dssp GHHHHHHHHHHHHHSSSCCCEEEEEEHHHHHCEEEGGGS----------------CCCCCC--CCS---SCCBCCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCHHHhhhhcccccc----------------cccccc--cCC---CCCCCCHHHHH
Confidence 36789999999999999999999999982 2111000 000000 000 01234567899
Q ss_pred HHHHHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhh-ccccccccchhhhccCccc
Q 041113 78 EVLELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLET-EQNILFLDHLDHALLSESV 155 (983)
Q Consensus 78 ~~~~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~-hp~~~~~g~~g~~~~~~~~ 155 (983)
+++++|.+||||+|++|+++. .++.+++.+|||++|+||++|++ | ||.||++ ||++ +|.+| .++..++
T Consensus 196 ~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~-~------~g~~~~~~~p~~--~G~~g-~~~~~~~ 265 (563)
T 2uz1_A 196 QALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVFADYE-G------LSMLSGLPDAMR--GGLVQ-NLYSFAK 265 (563)
T ss_dssp HHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHCCCEEECGG-G------GGGGTTSCGGGE--EEEGG-GGGGTTT
T ss_pred HHHHHHHcCCCcEEEECCccccccHHHHHHHHHHHhCCcEEEcCc-c------cCcCCCCCChhh--cCCCC-CCCHHHH
Confidence 999999999999999999876 45568999999999999999998 5 8999999 9995 78999 7777777
Q ss_pred cccCCCCEEEEeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC----CCChh
Q 041113 156 KDWIQFDVIIQIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP----HRSSK 230 (983)
Q Consensus 156 ~~~~~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~----~~~~~ 230 (983)
. +++||+||++|+++.+..+..|....+ ..++||||.|+.+++++++.++.+.+|++.++++|.+.+.. .....
T Consensus 266 ~-~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~ 344 (563)
T 2uz1_A 266 A-DAAPDLVLMLGARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQATAQDAAWPDRGD 344 (563)
T ss_dssp T-TCCCSEEEEESCCSSGGGTTTSCSSSCTTSEEEEECSCGGGTTSSSCCSEEECSCHHHHHHHHHHHHTTSCCCCCCHH
T ss_pred h-hcCCCEEEEECCCCcccccccccccCCCCCeEEEEECCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhhhcccccCcHH
Confidence 7 899999999999998776644432223 35799999999999999999999999999999999887654 23456
Q ss_pred HHHHHHH-HHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCC
Q 041113 231 WCSFLRA-LDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEF 309 (983)
Q Consensus 231 w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 309 (983)
|.+++.. .++.+........... ++++..+++.|.+.+|++++++.|+|+ +.+|..+++.+ ..|++|+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~iv~~d~G~----~~~~~~~~~~~-~~~~~~~----- 413 (563)
T 2uz1_A 345 WCAKVTDLAQERYASIAAKSSSEH-ALHPFHASQVIAKHVDAGVTVVADGAL----TYLWLSEVMSR-VKPGGFL----- 413 (563)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSS-SCCHHHHHHHHHTTCSTTEEEEECSSH----HHHHHHHHHTT-SCCSEEE-----
T ss_pred HHHHHHHHHHHHhHhhhhccccCC-CcCHHHHHHHHHHhCCCCcEEEEcCch----HHHHHHHhccc-cCCCeEE-----
Confidence 8766655 4433221110111122 799999999999999999999999998 66666665553 4444444
Q ss_pred CCcceeEeecCCCCCccchHHHHHhhhhcc---CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccC
Q 041113 310 PHQWIRVAGNRGASGIDGLLSTAIGFAVGC---NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSL 386 (983)
Q Consensus 310 ~~~~~~~~~~~G~mG~~g~lpaaiGaalA~---~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~ 386 (983)
.++++|+||+ ++|+|+|+++|. +++||+++|||+|+|+++||+|+++ +++|+++||+||++|++++.
T Consensus 414 ------~~~g~g~~G~--~l~~AiGaa~a~~~~~~~vv~i~GDG~~~~~~~~L~ta~~--~~l~~~ivv~nN~~~~~~~~ 483 (563)
T 2uz1_A 414 ------CHGYLGSMGV--GFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVR--KQLPLIVIIMNNQSWGATLH 483 (563)
T ss_dssp ------CCCTTCCTTT--HHHHHHHHHHHHHHHTCEEEEEEEHHHHGGGTTHHHHHHH--HTCCCEEEEEECSBCHHHHH
T ss_pred ------CCCCCccccC--hHHHHHHHHHHhhCCCCeEEEEEccHHHhCCHHHHHHHHH--hCCCeEEEEEeCCcchHHHH
Confidence 3577899999 999999999996 7999999999999999999999999 99999999999999999975
Q ss_pred CCCCCCCCccccc--cccccC-CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchH
Q 041113 387 LPIADRTEPRILD--QYFYTT-HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANAT 457 (983)
Q Consensus 387 ~~~~~~~~~~~~~--~~~~~~-~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~ 457 (983)
++. ..+. +.+++. .++||.++|++||+++++|++.+||+++|+++++.++|+||||.+++++..+
T Consensus 484 ~~~------~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~~~~~p 551 (563)
T 2uz1_A 484 FQQ------LAVGPNRVTGTRLENGSYHGVAAAFGADGYHVDSVESFSAALAQALAHNRPACINVAVALDPIPP 551 (563)
T ss_dssp HHH------HHTCTTCCCSCBCCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHHHSSSCEEEEEECCSCCCCH
T ss_pred HHH------HhcCCCcccCCcCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHHCCCCEEEEEEeccccCCc
Confidence 321 1111 233333 5689999999999999999999999999999998899999999999765443
|
| >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-51 Score=464.67 Aligned_cols=347 Identities=15% Similarity=0.123 Sum_probs=260.8
Q ss_pred CccceeEeEEEEEEEE----------------eeCCCC---------CccccccccCcceeeeEEEEEEEECCCCEEEEe
Q 041113 489 SLSICKICRMEYSLYR----------------IQLCAP---------PTSSYIDHNRSRFCREGFILSLYLEDGSVGYGE 543 (983)
Q Consensus 489 ~~~~mkI~~v~~~~~~----------------~pl~~p---------~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE 543 (983)
+|+.-||++|+.+.+. .|+..| +.++++ ...++.++|||+||+|++||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ts~g-----~~~~~~v~V~v~td~G~~G~Ge 76 (404)
T 3ekg_A 2 SLSIPTIKQVRAFVLRGGGADYHDQGDGHWIDDHISTPMGKYPEYRQSRRSFG-----INVLGTLVVEIEASDGNVGFAV 76 (404)
T ss_dssp CCCCCBEEEEEEEEECSSTTSTTCCCTTCGGGSSCCCTTTTSGGGTSCTGGGT-----TTSSCEEEEEEEETTSCEEEEE
T ss_pred CCCCCceeeEEEEEecCCCCccCCCCCCceecccccCcchhhhhhcccccccC-----cccccEEEEEEEECCCCEEEEe
Confidence 3666799999999886 122222 233333 1247889999999999999999
Q ss_pred ecCcCcCcccHHHHHHHH-HHHHhHhccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCC
Q 041113 544 VAPLEIHKENLLDAEEQL-RFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSS 622 (983)
Q Consensus 544 ~~~~~~~~~~~~~~~~~l-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~p 622 (983)
+.+. +. ....+ +.+.|.|+|+++.+++.++..++... ......+...+|++|||+|||||+||.+|+|
T Consensus 77 ~~~g----~~---~~~~i~~~l~p~LiG~dp~~ie~i~~~m~~~~----~~~g~~G~~~~A~sAID~ALwDl~gK~~g~P 145 (404)
T 3ekg_A 77 TTGG----EP---AAYIVEKHLARFLEGARVTDIERIWDQMYNST----LYYGRKGLVINTISGVDLALWDLLGKVRREP 145 (404)
T ss_dssp EECH----HH---HHHHHHHTTHHHHTTSBTTCHHHHHHHHHHHH----GGGCSSTHHHHHHHHHHHHHHHHHHHHHTSB
T ss_pred CCCc----HH---HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHh----hhcCCCcchHHHHHHHHHHHHHHHHHHhCCC
Confidence 8642 21 12223 46889999999998777765332211 0111234567899999999999999999999
Q ss_pred hhhhcCCCCccccccccccceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCC-----ChHHHHHHHHHHHHH
Q 041113 623 FLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRA-----DPIKDAEVIQEVRKK 697 (983)
Q Consensus 623 v~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~-----~~~~d~~~v~~vr~~ 697 (983)
||+||||.. +++|++|++. .+++ ..+++||+++|+|+|... ++++|+++|++||++
T Consensus 146 v~~LLGG~~---------r~~v~~y~~g---~~~~-------~~~~~Gf~~~K~Kv~~g~~~g~~~~~~di~~v~avRea 206 (404)
T 3ekg_A 146 VHQLLGGAV---------RDELQFYATG---ARPD-------LAQKMGFIGGKMPLHHGPSEGEEGLKKNLEELATMRER 206 (404)
T ss_dssp HHHHTTCCS---------SSEEEEEEES---SCHH-------HHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCC---------CCeeEEecCC---CCHH-------HHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHH
Confidence 999999986 5789999863 2443 234689999999997421 247899999999999
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCc--EEeCCCccCcCCChHHHHHhh
Q 041113 698 VGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLP--VALDETIDKFQKDPLNMLEKY 773 (983)
Q Consensus 698 ~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ip--Ia~dEs~~~~~~~~~~~~~~~ 773 (983)
+|+++.||+|+|++||+++|+++++.|+++++.|||||++ |++++++|++++++| |++||++++..+ ++.+
T Consensus 207 ~G~~~~L~vDaN~~w~~~~A~~~~~~Le~~~l~~iEeP~~~~d~~~~a~l~~~~~~pi~Ia~gE~~~~~~~-----~~~l 281 (404)
T 3ekg_A 207 VGPDFWLMFDCWMSLDLNYATRLARGAREYGLKWIEEALPPDDYWGYAELRRNAPTGMMVTTGEHEATRWG-----FRML 281 (404)
T ss_dssp HCSSSEEEEECTTCCCHHHHHHHHHHHGGGTCCEEECCSCTTCHHHHHHHHHHSCTTCEEEECTTCCHHHH-----HHHH
T ss_pred hCCCCeEEecCCCCCCHHHHHHHHHHHhhcCCcEEecCCCcccHHHHHHHHHhcCCCeEEEecCccCCHHH-----HHHH
Confidence 9999999999999999999999999999999999999998 789999999998776 999999998753 6666
Q ss_pred cCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccC
Q 041113 774 AHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQG 852 (983)
Q Consensus 774 ~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g 852 (983)
++.+ +|++|+|++++|||+++++++++|+++|++++.+++ + .+++|++++++|+. . .++... .+..
T Consensus 282 i~~~a~dii~~d~~~~GGitea~kia~lA~a~gv~v~~h~~---~---~a~~hl~aa~pn~~--~---~E~~~~--~~~~ 348 (404)
T 3ekg_A 282 LEMGCCDIIQPDVGWCGGVTELLKISALADAHNALVVPHGS---S---VYSYHFVATRQNSP--F---AEFLMM--APKA 348 (404)
T ss_dssp HHTTCCSEECCCTTTTTHHHHHHHHHHHHHHTTCEECCCCC---T---HHHHHHHTTCTTCC--S---EEEECC--STTS
T ss_pred HHcCCCCeEecChhhcCCccHHHHHHHHHHHcCCEEEecCc---H---HHHHHHHHhCCCcc--e---eeeccc--cccc
Confidence 6554 799999999999999999999999999999876663 1 38999999999752 1 111110 0000
Q ss_pred ccchhcccccCCCCCceeec----cC--CCCeeeEEecchhhh
Q 041113 853 LGTYQWLKEDVTTDPISICH----NS--CRGFVEASVAKATHI 889 (983)
Q Consensus 853 ~~~~~~~~~d~~~~p~~~~~----~P--~~pGlGv~~d~a~~~ 889 (983)
-....|+ .+++..++.+++ +| ++|||||++|++..+
T Consensus 349 ~~~~~~~-~~~~~~~~~~~dG~i~vP~~~~PGLGveld~~~~~ 390 (404)
T 3ekg_A 349 DQVVPMF-HPQLLGEPVPENGRMRLSRLDQPGFGVTLNPECQL 390 (404)
T ss_dssp CSCCCTT-TTTEETCCCCBTTEEEGGGCCSSBTSCEECTTSCC
T ss_pred cccchhh-hhcccCCCcccCCEEECCCCCCCcccceECccccc
Confidence 0112233 344444444553 99 999999999954433
|
| >3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-51 Score=466.04 Aligned_cols=359 Identities=12% Similarity=0.048 Sum_probs=266.0
Q ss_pred eeEeEEEEEEEE-----------------------eeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCc
Q 041113 493 CKICRMEYSLYR-----------------------IQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEI 549 (983)
Q Consensus 493 mkI~~v~~~~~~-----------------------~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~ 549 (983)
-||++|+.+.+. .||++++......-+.|...++.++|||+||+|++||||+.+.+
T Consensus 9 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~ts~g~~~~~~vlV~V~tddGi~G~Ge~~~~~- 87 (455)
T 3fxg_A 9 PKIKAIRSFIIGGVGSGGDYHNVKGGHWLIDSDISTPASKWEQYKKSRTSWGINVLGSFLVEIEATDGTVGFATGFGGP- 87 (455)
T ss_dssp CCEEEEEEEEECSSSCSSCTTCCCTTCHHHHSCCCCTTTTSGGGTSCTTTTTTTSSCEEEEEEEETTSCEEEEEEECHH-
T ss_pred CcceeEEeEEeecccCCCCCCCCCCCcccccccccCcccccccccccccccccccceEEEEEEEECCCCEEEEeCcCCH-
Confidence 489999998873 56666653221111112233788999999999999999986432
Q ss_pred CcccHHHHHHHHHHHHhHhccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCC
Q 041113 550 HKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYP 629 (983)
Q Consensus 550 ~~~~~~~~~~~l~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg 629 (983)
.. .....+.+.|.|+|+++.+++.++..++.. .......+...+|++|||||||||+||.+|+|||+||||
T Consensus 88 ---~~--~~~i~~~lap~LiG~dp~~ie~i~~~m~~~----~~~~g~~G~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG 158 (455)
T 3fxg_A 88 ---PA--CWLVHQHFERFLIGADPRNTNLLFEQMYRA----SMFYGRKGLPIAVISVIDLALWDLLGKVRNEPVYRLIGG 158 (455)
T ss_dssp ---HH--HHHHHHTTHHHHTTCCTTCHHHHHHHHHHH----TTTTCSSSHHHHHHHHHHHHHHHHHHHHHTCBGGGGTTC
T ss_pred ---HH--HHHHHHHHHHHHCCCCcchHHHHHHHHHHh----hhhccCCcchHHHHHHHHHHHHHHHHHHcCCCHHHHhCC
Confidence 11 111224688999999999887776533211 111112234467999999999999999999999999999
Q ss_pred CCccccccccccceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC-----CChHHHHHHHHHHHHHcCCCcEE
Q 041113 630 LTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR-----ADPIKDAEVIQEVRKKVGHRIEL 704 (983)
Q Consensus 630 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~-----~~~~~d~~~v~~vr~~~g~~~~l 704 (983)
.. +++|++|++. .+++ .++++||+++|+|+|.. .++++|+++|++||+++|+++.|
T Consensus 159 ~~---------rd~vp~y~~g---~~~~-------~~~~~Gf~~~KlKv~~~~~~G~~~~~~di~rv~avRea~G~d~~L 219 (455)
T 3fxg_A 159 AT---------KERLDFYCTG---PEPT-------AAKAMGFWGGKVPLPFCPDDGHEGLRKNVEFLRKHREAVGPDFPI 219 (455)
T ss_dssp CS---------CSEEEEEEES---SCHH-------HHHHHTCSCEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSSSCE
T ss_pred cc---------CCeeEEeecC---CCHH-------HHHHcCCCEEEEcCCCCcccccccHHHHHHHHHHHHHHhCCCCeE
Confidence 86 5889999863 3443 23568999999999641 12578999999999999999999
Q ss_pred EEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhc-CCcEEeCCCccCcCCChHHHHHhhcCCC-ceE
Q 041113 705 RVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEES-GLPVALDETIDKFQKDPLNMLEKYAHPG-IVA 780 (983)
Q Consensus 705 ~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~-~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~ 780 (983)
|||+|++|++++|+++++.|+++++.|||||++ |++++++|++++ .+|||+||++++..+ +..+++.+ +|+
T Consensus 220 ~vDaN~~wt~~~Ai~~~~~Le~~~l~~iEEPl~~dd~~~la~L~~~~~~iPIA~gEs~~s~~d-----~~~li~~~avDi 294 (455)
T 3fxg_A 220 MVDCYMSLNVSYTIELVKACLDLNINWWEECLSPDDTDGFALIKRAHPTVKFTTGEHEYSRYG-----FRKLVEGRNLDI 294 (455)
T ss_dssp EEECTTCCCHHHHHHHHHHTGGGCCSEEECCSCGGGGGGHHHHHHHCTTSEEEECTTCCHHHH-----HHHHHTTCCCSE
T ss_pred EEeCCCCCCHHHHHHHHHhcccCCcceecCCCCcchHHHHHHHHHhCCCCeEECCCccCCHHH-----HHHHHHcCCCCE
Confidence 999999999999999999999999999999998 788899999887 589999999998753 66666654 799
Q ss_pred EEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhccc
Q 041113 781 IVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLK 860 (983)
Q Consensus 781 i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 860 (983)
+|+|++++|||+++++++++|+++|++++.|++ ..+++|+++++||+. . .++.. ..+.+....+|+.
T Consensus 295 iq~d~~~~GGItea~kIa~lA~a~Gv~v~~H~~------~~aslHlaaa~pn~~--~---~E~~~--~~~~~~~~~~~~~ 361 (455)
T 3fxg_A 295 IQPDVMWLGGLTELLKVAALAAAYDVPVVPHAS------GPYSYHFQISQPNTP--F---QEYLA--NSPDGKSVLPVFG 361 (455)
T ss_dssp ECCCTTTSSCHHHHHHHHHHHHTTTCCBCCCSC------THHHHHHHTTCTTCC--C---EEEEC--CSTTSSSCCCTTG
T ss_pred EEECccccCCHHHHHHHHHHHHHcCCEEEecch------HHHHHHHHHhCCCCc--e---Eeecc--cccccccccchhc
Confidence 999999999999999999999999999876654 147999999999752 1 11110 0000001112332
Q ss_pred ccCCCCCceee----ccC--CCCeeeEEecchhhhhhhccccccccc
Q 041113 861 EDVTTDPISIC----HNS--CRGFVEASVAKATHILQNLQINNDVIC 901 (983)
Q Consensus 861 ~d~~~~p~~~~----~~P--~~pGlGv~~d~a~~~~~~~~~~~~~i~ 901 (983)
+++.++..++ .+| ++|||||++| ++.++++.-....+.
T Consensus 362 -~l~~~~~~~~dG~i~vp~~d~PGLGveld--e~~~~k~~~~~~~~~ 405 (455)
T 3fxg_A 362 -DLFIDEPIPTKGYLTTADLDKPGFGLTIN--PAARAKLIPSDYLFK 405 (455)
T ss_dssp -GGBSCCCCCTTSEEETGGGCSSBTCCCBC--HHHHTTEEEGGGGGC
T ss_pred -ccccCCCeeeCCEEeCCCCCCCccCcccC--HHHHHHhcccccccC
Confidence 3333333344 378 9999999999 778878764444333
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-52 Score=505.64 Aligned_cols=407 Identities=20% Similarity=0.227 Sum_probs=307.3
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.|++||++|.++|||||||+||.|+............ ...+...... +.......++.+.+++++
T Consensus 215 ~i~~~i~~A~~~A~~grpGPV~l~lP~Dv~~~~~~~p~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~i~~a~ 283 (677)
T 1t9b_A 215 ELPLRINEAFEIATSGRPGPVLVDLPKDVTAAILRNPIPTK----------TTLPSNALNQ-LTSRAQDEFVMQSINKAA 283 (677)
T ss_dssp GHHHHHHHHHHHHHSSSCCEEEEEEEHHHHHSBCCSCBC-------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEcCHHHhhhhcccccccc----------cccccccccC-CCccccccCCHHHHHHHH
Confidence 37899999999999999999999999874211110000000 0000000000 000001123456899999
Q ss_pred HHHhcCCceEEEEccCCC-h-hHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCcccccc
Q 041113 81 ELVQGVNKGLLLVGAVHN-E-DEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDW 158 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~-~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~ 158 (983)
++|++||||+|++|+|+. . .+.+++.+|||++|+||++|++ | ||+||++||++ +|++|..++..++..+
T Consensus 284 ~~L~~AkrPvIl~G~g~~~~~~~~~~l~~lae~~~~PV~tt~~-g------kg~~~~~hpl~--lG~~G~~g~~~~~~~l 354 (677)
T 1t9b_A 284 DLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQ-G------LGSFDQEDPKS--LDMLGMHGCATANLAV 354 (677)
T ss_dssp HHHHTCSSEEEEECGGGGGSTTHHHHHHHHHHHTTCCEEECGG-G------TTSSCTTSTTE--EEECSTTSCHHHHHHH
T ss_pred HHHHhCCCeEEEECcccccCchhHHHHHHHHHHhCCCeeeccc-c------CccCCCCCccc--cCcCCccCcHHHHHHH
Confidence 999999999999999985 3 3457999999999999999986 6 89999999996 6777777766677778
Q ss_pred CCCCEEEEeCCccccHHHHHHHHhcCC-ce---------EEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC-CC
Q 041113 159 IQFDVIIQIGSRITSKRISQMIEECFP-CT---------YILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP-HR 227 (983)
Q Consensus 159 ~~aDlvl~iG~~~~~~~~~~~~~~~~~-~~---------~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~-~~ 227 (983)
++||+||+||+++++..+..+ ..+.+ .+ +||||+|+.+++++++.++.|.+|++.+|++|++.+.. ..
T Consensus 355 ~~aDlvl~iG~r~~~~~t~~~-~~~~~~~~~~~~~~~~~iI~idid~~~~~~~~~~~~~i~gD~~~~l~~L~~~l~~~~~ 433 (677)
T 1t9b_A 355 QNADLIIAVGARFDDRVTGNI-SKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIFPVKE 433 (677)
T ss_dssp HHCSEEEEESCCCCTTTSCSG-GGSSHHHHHHHHTTSCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTTSCCCCC
T ss_pred hcCCEEEEECCccCcccccCc-cccCcccccccccCCceEEEEECCHHHhCCcccCCEEEeCCHHHHHHHHHHHhhcccc
Confidence 899999999999976544322 22211 23 99999999999999999999999999999999987754 33
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhc---CCCceEEEecCcchhhhhhhcCCCccccccccccc
Q 041113 228 SSKWCSFLRALDMMVASEISFQICADYSLTEPHVAHELSRAL---TSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIM 304 (983)
Q Consensus 228 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~ 304 (983)
...|.+.+...++.+.... .......++++..+++.|++.+ +++.+++.|.|+ +.+|..+++.+ +.|++|+
T Consensus 434 ~~~w~~~~~~~~~~~~~~~-~~~~~~~~l~~~~v~~~L~~~l~~~~~~~iv~~~vg~----~~~~~~~~~~~-~~p~~~~ 507 (677)
T 1t9b_A 434 RSEWFAQINKWKKEYPYAY-MEETPGSKIKPQTVIKKLSKVANDTGRHVIVTTGVGQ----HQMWAAQHWTW-RNPHTFI 507 (677)
T ss_dssp CHHHHHHHHHHHHHSCCCC-CCCCTTCCBCHHHHHHHHHHHHHTTCSCEEEEECSSH----HHHHHHHHSCC-CSTTCEE
T ss_pred chHHHHHHHHHHHhccccc-ccccCCCCcCHHHHHHHHHHHhhcCCCCEEEEeCCch----HHHHHHHhccc-CCCCeEE
Confidence 4568776655443221000 0001235689999999999999 567777788887 77787666554 5555554
Q ss_pred ccCCCCCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCcc
Q 041113 305 LNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAI 383 (983)
Q Consensus 305 ~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~ 383 (983)
.++++|+||+ ++|+|+|+++|. +++|||++|||||+|++|||+|+++ +++|++|||+||++|+|
T Consensus 508 -----------~sg~~G~mG~--~lpaAiGaalA~p~~~Vv~i~GDGsf~~~~~eL~ta~~--~~l~v~ivV~NN~~~g~ 572 (677)
T 1t9b_A 508 -----------TSGGLGTMGY--GLPAAIGAQVAKPESLVIDIDGDASFNMTLTELSSAVQ--AGTPVKILILNNEEQGM 572 (677)
T ss_dssp -----------CCCSSCCTTC--HHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHH--HTCCCEEEEEECSSCHH
T ss_pred -----------eCCCcchhhc--hHHHHHHHHHhCCCCeEEEEEeehHHhccHHHHHHHHH--hCCCeEEEEEeCCCchh
Confidence 3588899999 999999999998 8999999999999999999999999 99999999999999999
Q ss_pred ccCCCCCCCCCcccc-cccccc-CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 384 FSLLPIADRTEPRIL-DQYFYT-THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 384 ~~~~~~~~~~~~~~~-~~~~~~-~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
++.++. ..+ .++..+ ..++||.++|++||+++++|++.+||+++|+++++.++|+||||.+++.++
T Consensus 573 ~~~~~~------~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIev~~~~~~~ 640 (677)
T 1t9b_A 573 VTQWQS------LFYEHRYSHTHQLNPDFIKLAEAMGLKGLRVKKQEELDAKLKEFVSTKGPVLLEVEVDKKVP 640 (677)
T ss_dssp HHHHHH------HHSTTCCCSCCCCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHHHCSSCEEEEEEBCSSCC
T ss_pred hhhhhh------hhcCCCcccCcCCCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHHHCCCcEEEEEEecCCcc
Confidence 876421 111 112222 247899999999999999999999999999999988999999999998654
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-51 Score=463.28 Aligned_cols=348 Identities=13% Similarity=0.086 Sum_probs=268.2
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEEC---CCCEEEEeecCcCcCcccHHHHHHHHH-HHHhHh
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLE---DGSVGYGEVAPLEIHKENLLDAEEQLR-FLLHFM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~---~G~~G~GE~~~~~~~~~~~~~~~~~l~-~~~~~l 568 (983)
|||++|+ .+++|++.||.++.+.. ..++.++|+|+|+ +|++||||+.+ ..+.++.. ..++ .+.|.|
T Consensus 6 mkI~~i~--~~~~pl~~p~~~~~~~~----~~~~~~~V~v~td~~~~G~~G~GE~~~-~~~~~~~~---~~i~~~l~~~l 75 (392)
T 1tzz_A 6 VRIVDVR--EITKPISSPIRNAYIDF----TKMTTSLVAVVTDVVREGKRVVGYGFN-SNGRYGQG---GLIRERFASRI 75 (392)
T ss_dssp CCEEEEE--EEEEECCC-------------CCCEEEEEEEEEEEECSSSEEEEEEEC-CTTSCCCH---HHHHHTHHHHH
T ss_pred cEEeEEE--EEEecCCCccccccccc----CcceEEEEEEEECCCCCCCEEEEEecC-CCchHHHH---HHHHHHHHHHH
Confidence 8999999 88899999999988754 3478999999999 99999999987 33333332 3343 488999
Q ss_pred ccCcc----------cccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcC----CCCccc
Q 041113 569 TGAKI----------SYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILY----PLTEID 634 (983)
Q Consensus 569 ~g~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLG----g~~~~~ 634 (983)
+|+++ .+...++.. +.........+..++|++|||+||||+.||.+|+|||+||| |..
T Consensus 76 ~G~d~~~~~~~~~~~~~~~~i~~~-----l~~~~~~~~~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llG~~~~g~~--- 147 (392)
T 1tzz_A 76 LEADPKKLLNEAGDNLDPDKVWAA-----MMINEKPGGHGERSVAVGTIDMAVWDAVAKIAGKPLFRLLAERHGVKA--- 147 (392)
T ss_dssp HTSCGGGSBCTTSSSBCHHHHHHH-----HTTTCCSCCCSHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHTTSCC---
T ss_pred cCCCchhhhcccccccCHHHHHHH-----HHHhccccCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCCccCCCc---
Confidence 99988 433332211 11111111122467899999999999999999999999999 854
Q ss_pred cccccccceeEEEEeecC---CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 041113 635 EEISKRSTSIKICALIDS---NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRN 711 (983)
Q Consensus 635 ~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~ 711 (983)
+++||+|++... ..+++++.+.+++++++||++||+|+|. .+++.|+++|++||+++|+++.|++|+|++
T Consensus 148 ------~~~v~~y~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~-~~~~~~~e~v~avr~a~g~~~~l~vDan~~ 220 (392)
T 1tzz_A 148 ------NPRVFVYAAGGYYYPGKGLSMLRGEMRGYLDRGYNVVKMKIGG-APIEEDRMRIEAVLEEIGKDAQLAVDANGR 220 (392)
T ss_dssp ------CCEEEEEEECCCC----CHHHHHHHHHHHHTTTCSEEEEECSS-SCHHHHHHHHHHHHHHHTTTCEEEEECTTC
T ss_pred ------CCCeeEEEeCCcccCCCCHHHHHHHHHHHHHcCCCEEEEcCCC-CCHHHHHHHHHHHHHhcCCCCeEEEECCCC
Confidence 467999876422 2379999999999999999999999997 378999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-----CceEEEEc
Q 041113 712 WTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-----GIVAIVIK 784 (983)
Q Consensus 712 ~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-----~~~~i~~k 784 (983)
||.++|+++++.|+++++.|||||++ +++.+++|++++++||++||++.+..+ +..+++. .+|++++|
T Consensus 221 ~~~~~a~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~-----~~~~i~~~~~~~~~d~v~ik 295 (392)
T 1tzz_A 221 FNLETGIAYAKMLRDYPLFWYEEVGDPLDYALQAALAEFYPGPMATGENLFSHQD-----ARNLLRYGGMRPDRDWLQFD 295 (392)
T ss_dssp CCHHHHHHHHHHHTTSCCSEEECCSCTTCHHHHHHHTTTCCSCEEECTTCCSHHH-----HHHHHHHSCCCTTTCEECCC
T ss_pred CCHHHHHHHHHHHHHcCCCeecCCCChhhHHHHHHHHhhCCCCEEECCCCCCHHH-----HHHHHHcCCCccCCcEEEEC
Confidence 99999999999999999999999998 788999999999999999999988653 5555544 47999999
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCc---EEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccc
Q 041113 785 PSVIGGFENAGLIARWAQRHGKM---AVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKE 861 (983)
Q Consensus 785 ~~~~GGl~~~~~~~~~A~~~gi~---~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 861 (983)
++++||++++++++++|+++|++ +++|+ ++ ++.+|++++++|.. .....+...++ .
T Consensus 296 ~~~~GGit~~~~i~~~A~~~gi~~~~~~~~~-----~~-~~~~hl~aa~~~~~--------------~~~~~~~~~~~-~ 354 (392)
T 1tzz_A 296 CALSYGLCEYQRTLEVLKTHGWSPSRCIPHG-----GH-QMSLNIAAGLGLGG--------------NESYPDLFQPY-G 354 (392)
T ss_dssp TTTTTCHHHHHHHHHHHHHTTCCGGGBCCSC-----CB-HHHHHHHHHHTCSC--------------EEECTTCSTTT-B
T ss_pred ccccCCHHHHHHHHHHHHHCCCCCceEeecH-----HH-HHHHHHHHhCCCcc--------------ccccccccchH-H
Confidence 99999999999999999999999 88774 11 24599999988520 00001111112 3
Q ss_pred cCCCCCceeec----cCCCCeeeEEecchhhhhhhcc
Q 041113 862 DVTTDPISICH----NSCRGFVEASVAKATHILQNLQ 894 (983)
Q Consensus 862 d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~ 894 (983)
+++. |+.+++ +|++||||+++| ++.++++.
T Consensus 355 ~~~~-~~~~~~G~~~~p~~PGlGv~~d--~~~~~~~~ 388 (392)
T 1tzz_A 355 GFPD-GVRVENGHITMPDLPGIGFEGK--SDLYKEMK 388 (392)
T ss_dssp SCST-TCCCBTTEEECCCCSBTSGGGC--HHHHHHHH
T ss_pred hccC-CcceeCCEEECCCCCccCCccC--HHHHHHHH
Confidence 4555 777763 899999999999 77777765
|
| >2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-52 Score=463.36 Aligned_cols=320 Identities=18% Similarity=0.222 Sum_probs=263.5
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC---cCcccHHHHHHHHHHHHhHhc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQLRFLLHFMT 569 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~---~~~~~~~~~~~~l~~~~~~l~ 569 (983)
|||++|+++.+++|++.||.++.+.+ ..++.++|+|+|++|++||||+.+.+ ++.++...+...++.+.|.++
T Consensus 2 MkI~~i~~~~~~~pl~~p~~~~~~~~----~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~l~~~~~~l~ 77 (342)
T 2okt_A 2 LKLTALHFYKYSEPFKSQIVTPKVTL----THRDCLFIELIDDKGNAYFGECNAFQTDWYDHETIASVKHVIEQWFEDNR 77 (342)
T ss_dssp BCEEEEEEEEEEEEEEEEEECSSCEE----EEEEEEEEEEEETTCCEEEEECCCBSSTTSCSCBHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEEEEeecccCCeecccEEE----EeeeEEEEEEEECCCCEEEEEecCCCCCcCCCCCHHHHHHHHHHHHHHHc
Confidence 79999999999999999999887654 44889999999999999999998875 466777777777777669999
Q ss_pred cCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEe
Q 041113 570 GAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICAL 649 (983)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~ 649 (983)
|+++.+++.++..+. .. ...++|++|||+||||++||..|+ . |++|++
T Consensus 78 G~d~~~~~~l~~~l~-----~~------~g~~~a~said~ALwDl~gk~~g~---------~------------v~~~~~ 125 (342)
T 2okt_A 78 NKSFETYEAALKLVD-----SL------ENTPAARATIVMALYQMFHVLPSF---------S------------VAYGAT 125 (342)
T ss_dssp TCCBCSHHHHHHTTG-----GG------TTCHHHHHHHHHHHHHTTCCCCCE---------E------------EECEEE
T ss_pred CCCcCCHHHHHHHHH-----Hh------hcChHHHHHHHHHHHHHhhhhhCc---------e------------EeeeEE
Confidence 999887655543221 11 125789999999999999998876 2 667776
Q ss_pred e-cCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCC
Q 041113 650 I-DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD 728 (983)
Q Consensus 650 ~-~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~ 728 (983)
+ +. .+ +++ ++++++||++||+|+| ++ |+++|++||+++ +++.||||+|++||+++| ++++.|++++
T Consensus 126 ~~g~-~~-e~~----~~~~~~G~~~~KiKvg----~~-d~~~v~avr~~~-~~~~l~vDaN~~~~~~~A-~~~~~l~~~~ 192 (342)
T 2okt_A 126 ASGL-SN-KQL----ESLKATKPTRIKLKWT----PQ-IMHQIRVLRELD-FHFQLVIDANESLDRQDF-TQLQLLAREQ 192 (342)
T ss_dssp ESSC-CH-HHH----HHHHHHCCSEEEEECC----TT-HHHHHHHHTTSS-SCCEEEEECTTCCCGGGH-HHHHHHGGGC
T ss_pred EecC-CH-HHH----HHHHHcCCcEEEEEeC----HH-HHHHHHHHHHhC-CCCeEEEECCCCCCHHHH-HHHHHHhhCC
Confidence 5 32 22 444 6677889999999998 47 999999999999 999999999999999999 9999999999
Q ss_pred CceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHcC
Q 041113 729 LQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRHG 805 (983)
Q Consensus 729 i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~g 805 (983)
+.|||||++ +++++++ +++++|||+||++++..+ +..+++ ..+|++|+|++++||++++++++++|+++|
T Consensus 193 i~~iEqP~~~~d~~~~~~--~~~~ipIa~dEs~~~~~~-----~~~~i~~~a~d~i~~k~~~~GGit~~~~ia~~A~~~g 265 (342)
T 2okt_A 193 VLYIEEPFKDISMLDEVA--DGTIPPIALDEKATSLLD-----IINLIELYNVKVVVLKPFRLGGIDKVQTAIDTLKSHG 265 (342)
T ss_dssp EEEEECCCSSGGGGGGSC--TTSSCCEEESTTCCCHHH-----HHHHHHHSCCCEEEECHHHHTSGGGHHHHHHHHHHTT
T ss_pred CcEEECCCCCccHHHHHH--hcCCCCEEecCCCCCHHH-----HHHHHHhCCCCEEEEChhhcCCHHHHHHHHHHHHHCC
Confidence 999999999 4555555 577999999999999753 555554 457999999999999999999999999999
Q ss_pred CcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec---cCCCCeeeEE
Q 041113 806 KMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH---NSCRGFVEAS 882 (983)
Q Consensus 806 i~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~---~P~~pGlGv~ 882 (983)
+++++|+++|++|++++++|+++++.. +... .++..++.+|++.+|+.+++ .++.||||++
T Consensus 266 i~~~~~~~~es~i~~aa~~hlaa~~~~-------------~~~l---~~~~~~~~~d~~~~~~~~~~G~~~~~~PGlg~~ 329 (342)
T 2okt_A 266 AKVVIGGMYEYGLSRYFTAMLARKGDY-------------PGDV---TPAGYYFEQDVVAHSGILKEGRLEFRPPLVDIT 329 (342)
T ss_dssp CEEEEBCSSCCHHHHHHHHHHHTTSSS-------------CCBC---CCTTSSCSSCSSTTTTEEETTEEEECCCCCCGG
T ss_pred CEEEEcCCcccHHHHHHHHHHHHhccc-------------cccc---CCchhhhhccccCCCceEECCEEEeCcccCCHH
Confidence 999999999999999999999998721 0011 13445678898888998884 3488999987
Q ss_pred ec
Q 041113 883 VA 884 (983)
Q Consensus 883 ~d 884 (983)
+-
T Consensus 330 ~~ 331 (342)
T 2okt_A 330 QL 331 (342)
T ss_dssp GC
T ss_pred Hc
Confidence 54
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-52 Score=500.07 Aligned_cols=400 Identities=15% Similarity=0.135 Sum_probs=307.4
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.+++||+.|.++|||||||+||+|++..+.... ...+.... ..+. ....++ +.+++++
T Consensus 138 ~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~~--------------~~~~~~~~-~~~~--~~~~~~-~~v~~~~ 199 (589)
T 2pgn_A 138 KVGEAIHEAFRVAEGHPAGPAYVDIPFDLTADQIDDK--------------ALVPRGAT-RAKS--VLHAPN-EDVREAA 199 (589)
T ss_dssp GHHHHHHHHHHHHTSSSCCEEEEEEETHHHHCEEECT--------------TTSCCCCC-CCCC--CCCCCH-HHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCccEEEEeCHhhhhcccccc--------------cccccccc-cCCc--cCCChH-HHHHHHH
Confidence 3688999999999999999999999998421110000 00000000 0000 001233 6799999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|.+||||+|++|+++. .++.+++.+|||++|+||++|++ | ||.+|++||++ +|..|..++..++..++
T Consensus 200 ~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~-~------~g~~~~~~p~~--~G~~g~~~~~~~~~~l~ 270 (589)
T 2pgn_A 200 AQLVAAKNPVILAGGGVARSGGSEALLKLAEMVGVPVVTTST-G------AGVFPETHALA--MGSAGFCGWKSANDMMA 270 (589)
T ss_dssp HHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECTT-T------TTSSCTTSTTE--EEECSTTSCHHHHHHHH
T ss_pred HHHHhCCCeEEEECCCcccccHHHHHHHHHHHhCCCEEEccc-c------CccCCCCChhh--cCCccccCCHHHHHHHh
Confidence 999999999999999875 45568999999999999999998 5 79999999995 67777666666667788
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccC-----C----CCChh
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQV-----P----HRSSK 230 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~-----~----~~~~~ 230 (983)
+||+||+||+++.+..+. |....++.++||||.|+.+++++++.++.+.+|++.++++|.+.+. . .....
T Consensus 271 ~aDlvl~iG~~~~~~~~~-~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 349 (589)
T 2pgn_A 271 AADFVLVLGSRLSDWGIA-QGYITKMPKFVHVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVLPGTSGFKAVRYQEREN 349 (589)
T ss_dssp HCSEEEEESCCCCTTTTT-TTTTCCCCSEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHHHHGGGSTTCCCCCGGGSTT
T ss_pred hCCEEEEECCCccccccc-ccccCCCCeEEEEeCCHHHHCCCcCCCEEEEeCHHHHHHHHHHHhhhcccccccccccchh
Confidence 999999999999877665 5322234579999999999999999999999999999999987664 1 12356
Q ss_pred HH--HHHHH-HHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccC
Q 041113 231 WC--SFLRA-LDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNS 307 (983)
Q Consensus 231 w~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~ 307 (983)
|. +.++. .++ .. .... .....++++..+++.|.+.++++++++.|+|+ +.+|..+++++ +.|++|+.
T Consensus 350 w~~~~~~~~~~~~-~~-~~~~-~~~~~~l~~~~~~~~l~~~l~~~~iv~~d~g~----~~~~~~~~~~~-~~~~~~~~-- 419 (589)
T 2pgn_A 350 FRQATEFRAAWDG-WV-REQE-SGDGMPASMFRAMAEVRKVQRPEDIIVTDIGN----HTLPMFGGAIL-QRPRRLVT-- 419 (589)
T ss_dssp HHHHHHHHHHHHH-HH-HHHT-CCCCSSCCHHHHHHHHHHTCCTTCEEEECSST----THHHHHHHCCC-SSTTCEES--
T ss_pred hccHHHHHHHHHH-HH-hhhc-cCCCCCcCHHHHHHHHHHhCCCCCEEEEcCch----HHHHHHHhccc-CCCCcEEC--
Confidence 77 55544 322 11 0111 00245799999999999999999999999999 44454444443 44554442
Q ss_pred CCCCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccC
Q 041113 308 EFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSL 386 (983)
Q Consensus 308 ~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~ 386 (983)
+.++|+||+ ++|+|+|+++|. +++||+++|||+|+|++|||+|+++ +++|+++||+||++|++++.
T Consensus 420 ---------~~g~g~mG~--~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~--~~l~~~ivv~nN~~~~~~~~ 486 (589)
T 2pgn_A 420 ---------SMAEGILGC--GFPMALGAQLAEPNSRVFLGTGDGALYYHFNEFRVAVE--HKLPVITMVFTNESYGANWT 486 (589)
T ss_dssp ---------CTTTCCTTC--HHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHH--TTCCCEEEEEECSBCHHHHH
T ss_pred ---------CCCcchhhh--HHHHHHHHHHhCCCCcEEEEEeeHHHHhhHHHHHHHHH--hCCCeEEEEEECCCcccchH
Confidence 467899999 999999999998 8999999999999999999999999 99999999999999999976
Q ss_pred CCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccch
Q 041113 387 LPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANA 456 (983)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~ 456 (983)
++... ...++.....++||.++|++||+++++|++.+||+++|+++++.++|+||||.+++.++.
T Consensus 487 ~~~~~-----~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~liev~~~~~~~~ 551 (589)
T 2pgn_A 487 LMNHQ-----FGQNNWTEFMNPDWVGIAKAFGAYGESVRETGDIAGALQRAIDSGKPALIEIPVSKTQGL 551 (589)
T ss_dssp HHHHH-----HSSCCSCBCCCCCHHHHHHHHTCEEEECTTTCCHHHHHHHHHHHCSCEEEEEECCSSSST
T ss_pred HHHhh-----cCCCccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCCCCc
Confidence 42110 001111112368999999999999999999999999999999889999999999987643
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=498.78 Aligned_cols=401 Identities=14% Similarity=0.155 Sum_probs=306.8
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++++++|++.|.++|||||||+||.|++..+.... +. ...+... + .+.+..+.+++++
T Consensus 161 ~i~~~l~~A~~~A~~~r~GPV~l~iP~d~~~~~~~~~-----------~~-~~~~~~~------~--~~~~~~~~i~~~~ 220 (616)
T 2pan_A 161 LVPRVLQQAFHLMRSGRPGPVLVDLPFDVQVAEIEFD-----------PD-MYEPLPV------Y--KPAASRMQIEKAV 220 (616)
T ss_dssp GHHHHHHHHHHHHHSSSCCCEEEEEEHHHHHSEEECC-----------GG-GCCCCCC------C--CCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEcchhhhhcccccc-----------cc-ccccccc------C--CCCCCHHHHHHHH
Confidence 4788999999999999999999999999643321000 00 0000000 0 0122366799999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccC-cccccc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLS-ESVKDW 158 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~-~~~~~~ 158 (983)
++|.+||||+||+|+|+. ..+.+++.+|||++|+||++|++ + ||.+|++||++ +|.+|..++. ..+..+
T Consensus 221 ~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~PV~~t~~-~------~g~~~~~hp~~--~G~~g~~~~~~~~~~~l 291 (616)
T 2pan_A 221 EMLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLM-G------WGCIPDDHELM--AGMVGLQTAHRYGNATL 291 (616)
T ss_dssp HHHHTCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECTT-T------TTSSCTTSTTB--CCCCSSSSCCHHHHHHH
T ss_pred HHHHcCCCeEEEECCCcCcccHHHHHHHHHHHhCCCEEEccc-c------CccCCCCCccc--cCCccccCCHHHHHHHH
Confidence 999999999999999875 44568999999999999999998 5 79999999995 7888877776 666778
Q ss_pred CCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC------CCChhHH
Q 041113 159 IQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP------HRSSKWC 232 (983)
Q Consensus 159 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~------~~~~~w~ 232 (983)
++||+||+||+++.+..+..+....+..++||||+|+.++++++++++.+.+|++.++++|.+.+.. .....|.
T Consensus 292 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~ 371 (616)
T 2pan_A 292 LASDMVFGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQEMQKAGRLPCRKEW 371 (616)
T ss_dssp HHCSEEEEESCCCCHHHHSSHHHHHTTCEEEEEESCGGGTTSSSCCSSCEECCHHHHHHHHHHHHHHHHHTTCSCCCHHH
T ss_pred HhCCEEEEECCCCcccccCcccccCCCCeEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHHhhhcccccccccHHHH
Confidence 9999999999999764443232223455799999999999999999999999999999999875421 1234565
Q ss_pred HHHHHHHHHHHHHHHhhh--cccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCC
Q 041113 233 SFLRALDMMVASEISFQI--CADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFP 310 (983)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 310 (983)
+.+...+.. ..... ....++++..+++.|++.+|++++++.|.|+ +.+|..+++.+ ++|++|+
T Consensus 372 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ivv~d~G~----~~~~~~~~~~~-~~~~~~~------ 436 (616)
T 2pan_A 372 VADCQQRKR----TLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGL----SQIAAAQMLHV-FKDRHWI------ 436 (616)
T ss_dssp HHHHHHHHT----TSEECCCCCCSSBCHHHHHHHHHHHSCTTEEEEECSSH----HHHHHHHHCCC-CSTTSEE------
T ss_pred HHHHHHHHh----hhhhccccCCCCcCHHHHHHHHHHhCCCCcEEEEcCcH----HHHHHHHhccc-CCCCeEE------
Confidence 443322211 11111 1235699999999999999999999999998 66676555543 4555444
Q ss_pred CcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCC
Q 041113 311 HQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPI 389 (983)
Q Consensus 311 ~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~ 389 (983)
..+++|+||+ ++|+|+|+++|. +++||+++|||+|+|+++||+|+++ +++|+++||+||++|+|++.++.
T Consensus 437 -----~~g~~G~~G~--~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~--~~l~~~ivv~NN~~~~~~~~~~~ 507 (616)
T 2pan_A 437 -----NCGQAGPLGW--TIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQ--FNIPYIHVLVNNAYLGLIRQSQR 507 (616)
T ss_dssp -----ECTTTCCTTC--HHHHHHHHHHHCTTCEEEEEEEHHHHHHTGGGHHHHHH--TTCCCEEEEEECSBCHHHHHHGG
T ss_pred -----cCCCcccccc--hHHHHHHHHHhCCCCcEEEEEcchhhhCCHHHHHHHHH--hCCCeEEEEEECCcchHHHHHHH
Confidence 3577899999 999999999998 8999999999999999999999999 99999999999999999876422
Q ss_pred CCCCC---ccccccccccC---CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc----cCCCEEEEEEcCccc
Q 041113 390 ADRTE---PRILDQYFYTT---HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH----LGTDRVIEVESCIDA 454 (983)
Q Consensus 390 ~~~~~---~~~~~~~~~~~---~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~----~~~p~lIeV~~~~~~ 454 (983)
..... ...+...+.+. +.+||.++|++||+++++|++.+||.++|+++++ .++|+||||.+++.+
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~~~~gp~lIev~~~~~~ 582 (616)
T 2pan_A 508 AFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVILERVT 582 (616)
T ss_dssp GGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEECSGGGHHHHHHHHHHHHHHHCSCEEEEEEBCSCC
T ss_pred HhcCCccccccccccccccCCCCCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEecccc
Confidence 11000 00111111111 2589999999999999999999999999999987 799999999999876
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-50 Score=465.96 Aligned_cols=373 Identities=17% Similarity=0.186 Sum_probs=277.6
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECC--CCEEEEeecCcCcCcccHHHHHHHHHHHHhHhcc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLED--GSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTG 570 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~--G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g 570 (983)
|||++|+++.+++|++.|+..+.... ....++.++|+|+||+ |++||||+.+.+...+ .+...++.+.|.|+|
T Consensus 2 mkI~~i~~~~~~~p~~~p~~~~~~~~--~~~~~~~~~V~v~td~~~G~~G~Ge~~~~g~~~~---~v~~~i~~l~~~liG 76 (441)
T 2hxt_A 2 RTIIALETHDVRFPTSRELDGSDAMN--PDPDYSAAYVVLRTDGAEDLAGYGLVFTIGRGND---VQTAAVAALAEHVVG 76 (441)
T ss_dssp CBEEEEEEEEEECCGGGTTTTCCSSC--SSCCCEEEEEEEEESSCTTCEEEEEEEECSTTHH---HHHHHHHTTHHHHTT
T ss_pred CcEEEEEEEEEEecCCCCcCcccccc--cCCCcceEEEEEEECCCCCCEEEEeecCCCCCcH---HHHHHHHHHHHHHcC
Confidence 89999999999999999986654321 1122578999999998 9999999986543333 344556678999999
Q ss_pred CcccccccccccCchhhhhh-----hcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCcccccccc------
Q 041113 571 AKISYFLPLLKGSFSSWIWS-----TLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISK------ 639 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~------ 639 (983)
+++.++...+.... ..+.. ..+ +..+...+|++|||+|||||+||.+|+|||+||||..+ ..+..
T Consensus 77 ~d~~~~~~~~~~~~-~~l~~~~~~~~~~-~~~g~~~~A~said~AlwDl~gk~~g~Pl~~lLGG~~~--~~~~~~~~~~~ 152 (441)
T 2hxt_A 77 LSVDKVIADLGAFA-RRLTNDSQLRWLG-PEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAELTP--EQLVDTIDFRY 152 (441)
T ss_dssp CBHHHHHHCHHHHH-HHHHTCHHHHHTC-SSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHHTSCH--HHHHHHCCCTT
T ss_pred CChHHHHhhHHHHH-HHHHhcccccccc-ccccHHHHHHHHHHHHHHHHHHHHcCCcHHHHhcCCCc--ccccccccccc
Confidence 99877543221110 11110 011 11233578999999999999999999999999999641 11100
Q ss_pred ----------------------------ccceeEEEEee--cCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHH
Q 041113 640 ----------------------------RSTSIKICALI--DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAE 689 (983)
Q Consensus 640 ----------------------------~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~ 689 (983)
.++++|+|.+. +...+++++.+.+++++++||++||+|+|. +++.|++
T Consensus 153 ~~d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~vp~y~~~~g~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~--~~~~d~e 230 (441)
T 2hxt_A 153 LSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGA--NVQDDIR 230 (441)
T ss_dssp CTTTCCHHHHHHHHHHHGGGHHHHHHHHHHHCEEEEEEEEECTTSCHHHHHHHHHHHHHTTCSEEEEECCS--CHHHHHH
T ss_pred cccccchhhhhhhhhcccccchhhhhhcccCCcceeEecccccCCCHHHHHHHHHHHHHcCCCEEEEccCC--CHHHHHH
Confidence 02468888753 123479999999999999999999999996 7899999
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhc-CCcEEeCCCccCcCCCh
Q 041113 690 VIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEES-GLPVALDETIDKFQKDP 766 (983)
Q Consensus 690 ~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~-~ipIa~dEs~~~~~~~~ 766 (983)
+|++||+++|+++.|++|+|++|+.++|+++++.|+++++.|||||++ +++.+++|++++ ++||++||++++..+
T Consensus 231 ~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~-- 308 (441)
T 2hxt_A 231 RCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWIEEPTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVV-- 308 (441)
T ss_dssp HHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHTTGGGCCSCEECCSCTTCHHHHHHHHHHHTTSCEEECTTCCSHHH--
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeeeCCCCHHHHHHHHHHHhhCCCCCEEEeCCcCCHHH--
Confidence 999999999999999999999999999999999999999999999998 788999999987 699999999998753
Q ss_pred HHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccC
Q 041113 767 LNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNREL 845 (983)
Q Consensus 767 ~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~ 845 (983)
+..+++. .+|++++|++++|||+++++++++|+++|++++ +|+.+. ++++++|.++.++++. .
T Consensus 309 ---~~~~i~~~~~d~v~ik~~~~GGite~~~ia~~A~~~g~~~~-~h~~~~--~~~~~~~~~a~~~~~~----------~ 372 (441)
T 2hxt_A 309 ---FKQLLQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVF-PHAGGV--GLCELVQHLAMADFVA----------I 372 (441)
T ss_dssp ---HHHHHHHTCCSEECCCTTTSSHHHHHHHHHHHHHHTTCEEC-CCCCST--THHHHHHHHHHHHHHH----------T
T ss_pred ---HHHHHHcCCCCEEEeCcceeCCHHHHHHHHHHHHHcCCeEE-EecChH--HHHHHHHHHHhcchhh----------c
Confidence 5666544 479999999999999999999999999999975 565444 4444443333222210 0
Q ss_pred CCCCccC-ccchhcccccCCCCCceeec----cCCCCeeeEEecchhhhhhhccccc
Q 041113 846 CPPVAQG-LGTYQWLKEDVTTDPISICH----NSCRGFVEASVAKATHILQNLQINN 897 (983)
Q Consensus 846 ~~~~~~g-~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~~ 897 (983)
.++.... +....++. +++.+|+.+++ +|++||||+++| ++.++++....
T Consensus 373 ~~~~~~~~~e~~~~~~-~~~~~~~~~~~G~i~~p~~PGlGve~d--~~~l~~~~~~~ 426 (441)
T 2hxt_A 373 TGKMEDRAIEFVDHLH-QHFLDPVRIQHGRYLAPEVPGFSAEMH--PASIAEFSYPD 426 (441)
T ss_dssp TCCCTTCCEEECCSSG-GGBSSCCCEETTEECCCCSSBCSCCBC--HHHHHHHBTTT
T ss_pred cccccCcceeechhhh-hhccCCccccCCeEECCCCCCCCcccC--HHHHHhccCCc
Confidence 0111000 00011233 33456787773 899999999999 88888888643
|
| >4gfi_A Mandelate racemase/muconate lactonizing enzyme FA protein; putative L-Ala-L/D-Glu epimerase; HET: GLU; 1.90A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-51 Score=452.98 Aligned_cols=321 Identities=16% Similarity=0.175 Sum_probs=258.0
Q ss_pred EeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCccc
Q 041113 495 ICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKIS 574 (983)
Q Consensus 495 I~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~~~ 574 (983)
+++++++.+++||+.||++|+++. +.++.++|+|+ |+|++|||||+|.++++++.+++...++.+.+.+...
T Consensus 4 ~r~l~~~~~r~pl~~pF~is~g~~----t~~~~v~V~i~-d~G~~G~GE~~p~~~~get~e~~~~~l~~~~~~~~~~--- 75 (329)
T 4gfi_A 4 PRYLQATTERFAVAGSFTISRGTR----THADVVTCTIR-DGSFTGIGECVPYPRYGESIEGVTADIEAMADRVAAG--- 75 (329)
T ss_dssp -CEEEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEE-ETTEEEEEEECCCGGGTCCHHHHHHHHHTTHHHHHHT---
T ss_pred CcEEEEEEEEEeccCcEEccCeEE----EEeEEEEEEEE-ECCEEEEEeccCCCCCCcCHHHHHHHHHHHhhhhccc---
Confidence 379999999999999999999864 45899999996 6899999999998876788877776665554433221
Q ss_pred ccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCC
Q 041113 575 YFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNK 654 (983)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~ 654 (983)
...+.....+ ..++|++|||+||||+.||..|+|||+||||.. ++++++|+++. ..
T Consensus 76 --------~~~~~~~~~~------~~~~a~aaid~AlwDl~gk~~g~pl~~llgG~~---------~~~v~~~~~~~-~~ 131 (329)
T 4gfi_A 76 --------LTRQELQQVM------KPGAARNAVDCALWDLEAKMSGKRAAEQVLGQP---------AQPLVTAYTIS-LA 131 (329)
T ss_dssp --------CCHHHHHHHS------CSSHHHHHHHHHHHHHHHHHHSCCHHHHHHSSC---------CCCEECCEEEC-CC
T ss_pred --------cchhhHHhhc------ccHHHHHHHHHHHHHHHhhhcCCChhHHhCCCC---------CCceeeeeccc-CC
Confidence 1111111112 136899999999999999999999999999987 57889888874 56
Q ss_pred CHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeec
Q 041113 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEE 734 (983)
Q Consensus 655 ~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEe 734 (983)
+++++..++.+ ..||+.+|+|+|. .+|+++++++|+. |+++.||||||++||+++|+++++.|+++++.||||
T Consensus 132 ~~~~~~~~~~~--~~~~~~~Kik~g~----~~d~~~v~~vr~~-g~d~~l~vDaN~~w~~~~A~~~~~~l~~~~i~~iEq 204 (329)
T 4gfi_A 132 DPDTMAAKTAE--NAGRPLLKIKTGT----ADDEARLRAVRAA-APEARIIIDANEGWNDDNIEYYLKLAAELKISLIEQ 204 (329)
T ss_dssp CHHHHHHHHHH--TTTSSEEEEECCS----SCCHHHHHHHHHH-CTTSEEEEECTTCCCTTTHHHHHHHHHHTTCCEEEC
T ss_pred ChHHHHHHHHh--hccccEEEecCCc----ccHHHHHHHHHHh-ccCCeEEEEcCCCCCHHHHHHHHHhhhhcCceEEEe
Confidence 77777766554 5799999999985 4588999999976 799999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC
Q 041113 735 PVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF 814 (983)
Q Consensus 735 P~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~ 814 (983)
|++..+....++.++++||++||++++..| +.... ..+|++|+|++++||++++++++++|+++|+++++||++
T Consensus 205 P~~~~~~~~~~~~~~~ipia~dEs~~~~~d-----~~~~~-~a~d~i~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~ 278 (329)
T 4gfi_A 205 PLPAGKDAMLARIEHPVLICADESVHSTED-----LAGLR-DRYDAINIKLDKTGGLTEALVMKAEAERLGFTIMVGCML 278 (329)
T ss_dssp CSCTTSCGGGGGSCCSSEEEESTTCCTGGG-----SGGGT-TTCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCS
T ss_pred cCCCccHHHHHHhcCCCCchhccCCCCHHH-----HHHHh-hccCeEEecCceeCCHHHHHHHHHHHHHCCCEEEECCcc
Confidence 998222223455678899999999999875 33333 357999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceee---ccCCCCee
Q 041113 815 ESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISIC---HNSCRGFV 879 (983)
Q Consensus 815 es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~---~~P~~pGl 879 (983)
||+|++++++|+|+..+++ .++++.++.+|+ .+++..+ .+|++|||
T Consensus 279 es~i~~aa~~~la~~~~~~------------------dld~~~~l~~d~-~~~~~~dG~~~~P~~PGL 327 (329)
T 4gfi_A 279 GTSLGMAPAVLVAQGTAFA------------------DLDGPLLLAEDR-DPGLVYEGSLVYPARPEL 327 (329)
T ss_dssp CCHHHHHHHHHHTTTCSEE------------------CCCHHHHBSSCC-SSCCCEETTEECCCCTTT
T ss_pred hhHHHHHHHHHHHhCCCee------------------ccCcchhhhccC-CCCcEEcCeEECCCCCCC
Confidence 9999999999999876532 245556677775 3344444 29999996
|
| >1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-50 Score=447.12 Aligned_cols=313 Identities=19% Similarity=0.230 Sum_probs=252.1
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHh-ccCc
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFM-TGAK 572 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l-~g~~ 572 (983)
||++|+++.+++||+.||.++.+.. ..++.++|+|+ ++|++||||+.+.++++++...+...+..+.|.+ .|.+
T Consensus 3 ~i~~i~~~~~~~pl~~p~~~s~~~~----~~~~~~~V~v~-d~G~~G~GE~~~~~~~g~~~~~~~~~i~~~~~~l~~~~~ 77 (324)
T 1jpd_X 3 HMRTVKVFEEAWPLHTPFVIARGSR----SEARVVVVELE-EEGIKGTGECTPYPRYGESDASVMAQIMSVVPQLEKGLT 77 (324)
T ss_dssp SCCEEEEEEEEEEBSCC------CC----SEEEEEEEEEE-ETTEEEEEEECCCGGGTCCHHHHHHHHHTTHHHHHTTCC
T ss_pred ceEEEEEEEEEecccccEEecCeeE----EEeeEEEEEEE-eCCceEEEEeeCCCCcCCCHHHHHHHHHHHHHHHhcCCC
Confidence 6889999999999999999988754 35889999999 7899999999987654565555555566677776 3555
Q ss_pred ccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecC
Q 041113 573 ISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDS 652 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~ 652 (983)
+.++. ..+. ..+|++|||+||||+.||..|+|||+||||..+ +..++.|.. +
T Consensus 78 ~~~~~------------~~~~------~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~--------~~~~~~~~~--~ 129 (324)
T 1jpd_X 78 REELQ------------KILP------AGAARNALDCALWDLAARRQQQSLADLIGITLP--------ETVITAQTV--V 129 (324)
T ss_dssp HHHHH------------HHSC------SSHHHHHHHHHHHHHHHHTTTCCHHHHHTCCCC--------SEEEBCEEE--C
T ss_pred HHHHH------------HhCc------cHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCC--------CCcceeEEe--e
Confidence 44321 1111 358899999999999999999999999999751 233444443 3
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..+++++.+++++++++||++||+|+|. ++|++++++||+++ +++.|++|+|++|++++|+++++.|+++++.||
T Consensus 130 ~~~~e~~~~~a~~~~~~G~~~~KiKvg~----~~d~~~v~avr~~~-~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 204 (324)
T 1jpd_X 130 IGTPDQMANSASTLWQAGAKLLKVKLDN----HLISERMVAIRTAV-PDATLIVDANESWRAEGLAARCQLLADLGVAML 204 (324)
T ss_dssp SCCHHHHHHHHHHHHHTTCSEEEEECCS----SCHHHHHHHHHHHC-TTSEEEEECTTCCCSTTHHHHHHHHHHTTCCEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeCC----chHHHHHHHHHHhC-CCCEEEEECcCCCCHHHHHHHHHHHHhCCCCEE
Confidence 4589999999999999999999999985 46899999999999 899999999999999999999999999999999
Q ss_pred ecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEe
Q 041113 733 EEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVV 810 (983)
Q Consensus 733 EeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~ 810 (983)
|||++ +++.+++++ +++||++||++++..+ +..+++. ++++|+|++++||++++++++++|+++|+++++
T Consensus 205 EqP~~~~d~~~~~~l~--~~ipIa~dE~~~~~~~-----~~~~~~~-~~~i~ik~~~~GGit~~~~i~~~A~~~g~~~~~ 276 (324)
T 1jpd_X 205 EQPLPAQDDAALENFI--HPLPICADESCHTRSN-----LKALKGR-YEMVNIKLDKTGGLTEALALATEARAQGFSLML 276 (324)
T ss_dssp ECCSCTTSCGGGGSSC--CSSCEEESTTCSSGGG-----HHHHBTT-BSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEE
T ss_pred ECCCCCCCHHHHHhcc--CCCCEEEcCCCCCHHH-----HHHHHhh-CCEEEEcchhhCcHHHHHHHHHHHHHcCCcEEE
Confidence 99999 556676664 7899999999998864 6666654 899999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceee
Q 041113 811 SAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISIC 871 (983)
Q Consensus 811 ~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~ 871 (983)
||++|++|++++++|+++.+.. +++++..++.+|+. +++.++
T Consensus 277 ~~~~es~i~~aa~~~la~~~~~------------------~~l~~~~~~~~d~~-~~~~~~ 318 (324)
T 1jpd_X 277 GCMLCTSRAISAALPLVPQVSF------------------ADLDGPTWLAVDVE-PALQFT 318 (324)
T ss_dssp CCCSCCHHHHHHHGGGGGGCSE------------------ECCCGGGGBSSCCS-SCCEEE
T ss_pred eCcchHHHHHHHHHHHhhcCCc------------------cCCCchhhhhccCC-CCcEEE
Confidence 9999999999999999986531 12344456777875 666654
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-50 Score=483.52 Aligned_cols=405 Identities=15% Similarity=0.091 Sum_probs=298.4
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.+++|++.|.+++||||||+||+|....+.... +. . . ........ . +...++++.+++++
T Consensus 144 ~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~~-~~--------~--~-~~~~~~~~-~---~~~~~~~~~i~~~~ 207 (568)
T 2c31_A 144 DIPIGIARAVRTAVSGRPGGVYVDLPAKLFGQTISVE-EA--------N--K-LLFKPIDP-A---PAQIPAEDAIARAA 207 (568)
T ss_dssp GHHHHHHHHHHHHHSSSCCEEEEEEETHHHHCEEEHH-HH--------H--H-HCCCCSCS-S---CCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeCCHHHhhcccccc-cc--------c--c-ccccccCC-C---CCCCCCHHHHHHHH
Confidence 3688999999999999999999999998421110000 00 0 0 00000000 0 12245667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|.+||||+|++|+++. .++.+++.+|||++|+||++|++ | ||.+|++||++ +|.. .+..++
T Consensus 208 ~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~-~------~g~~~~~~p~~--~G~~-------~~~~l~ 271 (568)
T 2c31_A 208 DLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGM-A------KGLLPDNHPQS--AAAT-------RAFALA 271 (568)
T ss_dssp HHHHTCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECGG-G------TTSSCTTCTTB--CGGG-------HHHHHH
T ss_pred HHHHhCCCCEEEECcccccccHHHHHHHHHHHhCCCEEeccc-c------cccCCCCChhh--cchH-------HHhhhc
Confidence 999999999999999875 45568999999999999999998 5 79999999996 4542 234678
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcC--CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC--CChhHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECF--PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH--RSSKWCSFL 235 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~--~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~--~~~~w~~~~ 235 (983)
+||+||+||+++.+..+.++...+. ..++||||+|+.+++++++.++.+.+|++.++++|.+.+... ....|.+.+
T Consensus 272 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~w~~~~ 351 (568)
T 2c31_A 272 QCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALKGAPKADAEWTGAL 351 (568)
T ss_dssp HCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred cCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhcCCcCCCceeeCCHHHHHHHHHHhhhhcCCCcHHHHHHH
Confidence 9999999999997655544333443 457999999999999999999999999999999998876532 245687666
Q ss_pred HHHHHHHHHHHHhhh-cc--cCCCCHHHHHHHHHhhc--CCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCC
Q 041113 236 RALDMMVASEISFQI-CA--DYSLTEPHVAHELSRAL--TSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFP 310 (983)
Q Consensus 236 ~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~~l--~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 310 (983)
...++.+........ .. ..++++..+++.|++.+ |++.+++.|.++. ..|...++.+ ..|++++
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iv~~dg~~~----~~~~~~~~~~-~~p~~~~------ 420 (568)
T 2c31_A 352 KAKVDGNKAKLAGKMTAETPSGMMNYSNSLGVVRDFMLANPDISLVNEGANA----LDNTRMIVDM-LKPRKRL------ 420 (568)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTTCBCHHHHHHHHHHHHHHCCSSEEEEESSHH----HHHHHHHCCC-CSTTCEE------
T ss_pred HHHHHhhhhhhhhhhcccccCCCcCHHHHHHHHHHHhcCCCCeEEEECChhH----HHHHHHHhcc-cCCCeEE------
Confidence 554433222121111 12 35799999999999999 9898888887662 2222212221 3444433
Q ss_pred CcceeEeecCCCCCccchHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCC-ccccCCCC
Q 041113 311 HQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGG-AIFSLLPI 389 (983)
Q Consensus 311 ~~~~~~~~~~G~mG~~g~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~-g~~~~~~~ 389 (983)
.++++|+||+ |+|+|+|+++|.+++||+++|||||+|++|||+|+++ +++|++|||+||++| .+.... .
T Consensus 421 -----~~g~~g~~G~--~l~~AiGaala~~~~vv~i~GDGsf~~~~~el~ta~~--~~l~~~ivv~NN~~~~~~~~~~-~ 490 (568)
T 2c31_A 421 -----DSGTWGVMGI--GMGYCVAAAAVTGKPVIAVEGDSAFGFSGMELETICR--YNLPVTVIIMNNGGIYKGNEAD-P 490 (568)
T ss_dssp -----ESTTTTCSSC--HHHHHHHHHHHHCSCEEEEEEHHHHHTTGGGHHHHHH--TTCCEEEEEEESSBSSCSCCCC-S
T ss_pred -----cCCCCccccc--cHHHHHHHHhCCCCcEEEEEcchHhhccHHHHHHHHH--hCCCeEEEEEeCchhHHHHHHH-h
Confidence 3578899999 9999999999988999999999999999999999999 999999999999995 443210 0
Q ss_pred CCCCCccccccccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHHHHH
Q 041113 390 ADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRK 464 (983)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~~~~ 464 (983)
. ...+... . .+++||.++|++||+++++|++.+||+++|+++++.++|+||||.+++.++++.....+.
T Consensus 491 --~--~~~~~~~-~-~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~~~~~~~~~~~~~~~~ 559 (568)
T 2c31_A 491 --Q--PGVISCT-R-LTRGRYDMMMEAFGGKGYVANTPAELKAALEEAVASGKPCLINAMIDPDAGVESGRIKSL 559 (568)
T ss_dssp --B--TTBCCTT-B-CCCCCHHHHHHTTTCEEEEESSHHHHHHHHHHHHHHTSCEEEEEEBCTTSSCC-------
T ss_pred --h--cCCcccC-c-CCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeccccCCCccccccc
Confidence 0 0011111 1 357999999999999999999999999999999988999999999999998877665554
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=490.99 Aligned_cols=390 Identities=14% Similarity=0.119 Sum_probs=298.8
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.+++|++.|.++|||||||+||.|++..+.... . ...+.... . +...++++.+++++
T Consensus 134 ~~~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~--~-----------~~~~~~~~---~---~~~~~~~~~i~~~~ 194 (528)
T 1q6z_A 134 EVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQ--S-----------HHLFDRHV---S---SSVRLNDQDLDILV 194 (528)
T ss_dssp GHHHHHHHHHHHHHSSSCCCEEEEEEGGGTTSBCCGG--G-----------GGGTTCCC---C---CCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEechhhhhCccccc--c-----------ccccccCC---C---CCCCCCHHHHHHHH
Confidence 3678999999999999999999999999765432110 0 00000000 0 11234567899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|.+||||+|++|+++. .++.+++.+|||++|+||+++.++| ||+||++||++ +|.+| .++..++..++
T Consensus 195 ~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~~~~~g------~g~~~~~~p~~--~G~~g-~~~~~~~~~l~ 265 (528)
T 1q6z_A 195 KALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAP------RCPFPTRHPCF--RGLMP-AGIAAISQLLE 265 (528)
T ss_dssp HHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSSCS------BCCSCTTSTTE--EEECC-SCHHHHHHHHT
T ss_pred HHHhcCCCeEEEECCccchhhHHHHHHHHHHHHCCCEEEeccCc------cccCCCCCccc--cCcCC-CCcHHHHHHHh
Confidence 999999999999999865 4456799999999999995555457 89999999995 78888 66666677889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRAL 238 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~ 238 (983)
+||+||++|+++.+..+..|...++ +.++||||.|+.+++++ ++++.+.+|++.++++|.+.+.... .|...++
T Consensus 266 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~-~~~~~i~~d~~~~l~~L~~~~~~~~--~~~~~~~-- 340 (528)
T 1q6z_A 266 GHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARA-PMGDAIVADIGAMASALANLVEESS--RQLPTAA-- 340 (528)
T ss_dssp TCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHHHHHHC-SSSEEEESCHHHHHHHHHHHSCCCC--SCCCCCC--
T ss_pred cCCEEEEECCCCccccccCcCCcCCCCCeEEEEeCCHHHhCCC-CCCeeEeCCHHHHHHHHHHHhhccc--cchHHHH--
Confidence 9999999999998777655543333 45799999999999888 8999999999999999998764321 1211000
Q ss_pred HHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEee
Q 041113 239 DMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAG 318 (983)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 318 (983)
...........++++..+++.|++.+|++++++.|+|+. ..|...++.. ..|++|+ .+.
T Consensus 341 -----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~----~~~~~~~~~~-~~~~~~~-----------~~~ 399 (528)
T 1q6z_A 341 -----PEPAKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTST----TAQMWQRLNM-RNPGSYY-----------FCA 399 (528)
T ss_dssp -----CCCCCCCCCSSSBCHHHHHHHHHHHSCTTCEEEEECTTS----HHHHHHHCCC-CSSSCEE-----------ECT
T ss_pred -----hhhhcccccCCCcCHHHHHHHHHhhCCCCeEEEECCccc----HHHHHHhccc-cCCCcEE-----------CCC
Confidence 000000012356999999999999999999999999994 4444333332 3344333 345
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
+ |+||+ ++|+|+|+++|. +++||+++|||+|+|+++||+|+++ +++|+++||+||++|++++.++.. ..
T Consensus 400 g-g~~G~--~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~~l~~a~~--~~l~~~ivv~nN~~~~~~~~~~~~-----~~ 469 (528)
T 1q6z_A 400 A-GGLGF--ALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQ--YNIPTIFVIMNNGTYGALRWFAGV-----LE 469 (528)
T ss_dssp T-CCTTS--HHHHHHHHHHHCTTSCEEEEEEHHHHTTTGGGHHHHHH--HTCCCEEEEEECSBCHHHHHHHHH-----HT
T ss_pred C-ccccc--hHHHHHHHHHhCCCCcEEEEECCcHHHhhHHHHHHHHH--hCCCeEEEEEeCCcchHhHHHHHH-----hc
Confidence 6 99999 999999999998 8999999999999999999999999 999999999999999998764211 00
Q ss_pred cccccccC-CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 398 LDQYFYTT-HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 398 ~~~~~~~~-~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
..++.++. +++||.++|++||+++++|++.+||+++|+++++.++|+||||.++++.
T Consensus 470 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~~~ 527 (528)
T 1q6z_A 470 AENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVSTVSPV 527 (528)
T ss_dssp CCSCCSCBCCCCCHHHHHHHHTCEEEEESSHHHHHHHHHHHHTCSSCEEEEEEBCC--
T ss_pred CCCcccCCCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHHCCCcEEEEEEecCCC
Confidence 11122222 5789999999999999999999999999999998899999999999764
|
| >1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-49 Score=437.75 Aligned_cols=302 Identities=23% Similarity=0.386 Sum_probs=256.4
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHHH-HHhHhccC
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLRF-LLHFMTGA 571 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~~-~~~~l~g~ 571 (983)
||++|+++.+++||+.||.++.+.. ..++.++|||+|+ |++||||+.+.+ +++++...+...++. +.|.+.|+
T Consensus 2 ~I~~i~~~~~~~pl~~p~~~s~~~~----~~~~~~~V~i~td-G~~G~GE~~~~~~~~~e~~~~~~~~l~~~~~~~l~g~ 76 (322)
T 1r6w_A 2 HMRSAQVYRWQIPMDAGVVLRDRRL----KTRDGLYVCLREG-EREGWGEISPLPGFSQETWEEAQSVLLAWVNNWLAGD 76 (322)
T ss_dssp CCEEEEEEEEEEEBCTTCBC-CCBC----CEEEEEEEEEEET-TEEEEEEECCCTTTCSSCHHHHHHHHHHHHHHHTTSC
T ss_pred cceEEEEEEEEEeccCCeEeccEEE----EeeeEEEEEEEEC-CeEEEEEecCCCCCCccCHHHHHHHHHHHHHHhhCCh
Confidence 7999999999999999999988754 4589999999986 999999999875 446676666666654 66788885
Q ss_pred cccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeec
Q 041113 572 KISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALID 651 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~ 651 (983)
.+ + . + .++|++|||+||||+.||..|+|+++ ++++|
T Consensus 77 --~~----l--------------~--~-~~~a~~aid~ALwDl~gk~~g~p~~~-----------------~v~~~---- 112 (322)
T 1r6w_A 77 --CE----L--------------P--Q-MPSVAFGVSCALAELTDTLPQAANYR-----------------AAPLC---- 112 (322)
T ss_dssp --CC----C--------------C--S-SHHHHHHHHHHHHHHTTCSCCCSCCC-----------------CCCEE----
T ss_pred --hh----c--------------c--c-ChHHHHHHHHHHHHhcCCCCCCCccc-----------------eEEEe----
Confidence 21 0 0 1 46899999999999999999988752 25554
Q ss_pred CCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccC---C
Q 041113 652 SNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC---D 728 (983)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~---~ 728 (983)
..+++++.++++++ +||++||+|+|.. ++++|+++++++|+++ +++.||+|+|++||.++|+++++.|+++ +
T Consensus 113 -~~~~~~~~~~a~~~--~G~~~~KiKvG~~-~~~~d~~~v~avr~~~-~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~ 187 (322)
T 1r6w_A 113 -NGDPDDLILKLADM--PGEKVAKVRVGLY-EAVRDGMVVNLLLEAI-PDLHLRLDANRAWTPLKGQQFAKYVNPDYRDR 187 (322)
T ss_dssp -CSCHHHHHHHHHTC--CSSEEEEEECSSS-CHHHHHHHHHHHHHHC-TTEEEEEECTTCBCHHHHHHHHHTSCTTTGGG
T ss_pred -CCCHHHHHHHHHHh--CCCceEEEEeCCC-CHHHHHHHHHHHHHhC-CCCeEEEeCCCCCCHHHHHHHHHHhhhhccCC
Confidence 25788888888775 7999999999973 7899999999999999 7999999999999999999999999999 9
Q ss_pred CceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcE
Q 041113 729 LQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMA 808 (983)
Q Consensus 729 i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~ 808 (983)
+.|||||+++++++++|++++++||++||++.+. + +..+...++|++|+|++++||++++++++++|+++|+++
T Consensus 188 i~~iEqP~~~~~~~~~l~~~~~ipIa~dE~~~~~-~-----~~~~~~~a~d~i~ik~~~~GGit~~~~ia~~A~~~gi~~ 261 (322)
T 1r6w_A 188 IAFLEEPCKTRDDSRAFARETGIAIAWDESLREP-D-----FAFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTA 261 (322)
T ss_dssp EEEEECCBSSHHHHHHHHHHHCCCEEESGGGGST-T-----CCCCCCTTEEEEEECHHHHCCHHHHHHHHHHHHHTTCEE
T ss_pred eeEEECCCCChHHHHHHHHhCCCCEEeCCCCCCh-h-----HhhhhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCcE
Confidence 9999999998899999999999999999999983 3 322233457999999999999999999999999999999
Q ss_pred EeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCcee
Q 041113 809 VVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISI 870 (983)
Q Consensus 809 ~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~ 870 (983)
++||++||+||.++++|+++++++ ...+|+++..||.+|++.+++..
T Consensus 262 ~~~~~~es~ig~aa~~hlaa~~~~---------------~~~~~l~t~~~~~~d~~~~~~~~ 308 (322)
T 1r6w_A 262 VISSSIESSLGLTQLARIAAWLTP---------------DTIPGLDTLDLMQAQQVRRWPGS 308 (322)
T ss_dssp EEBCSSCCHHHHHHHHHHHHHHCT---------------TSCCBCTTGGGBSCEESSCCTTC
T ss_pred EEECccccHHHHHHHHHHHHhcCC---------------CCccCCCchhhhhhccccCCccc
Confidence 999999999999999999998863 34567899999999988777644
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-51 Score=487.92 Aligned_cols=404 Identities=15% Similarity=0.136 Sum_probs=310.4
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.+++|++.|.+++ |||||+||+|++..+... .+...... ....+.+.++.+.+++++
T Consensus 143 ~~~~~l~~A~~~A~~~~-GPV~l~iP~dv~~~~~~~-----------------~~~~~~~~-~~~~~~~~~~~~~i~~~~ 203 (568)
T 2wvg_A 143 EAPAKIDHVIKTALREK-KPVYLEIACNIASMPCAA-----------------PGPASALF-NDEASDEASLNAAVEETL 203 (568)
T ss_dssp GHHHHHHHHHHHHHHHT-CCEEEEEEGGGTTSEECE-----------------ECCTHHHH-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CCEEEEechhHhcCcccC-----------------CCcccccc-cCCCCCccccHHHHHHHH
Confidence 36789999999999987 999999999975432210 00000000 000011224456799999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccch-hhhccCcccccc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHL-DHALLSESVKDW 158 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~-g~~~~~~~~~~~ 158 (983)
++|.+||||+|++|+++. .++.+++.+|||++|+||++|++ | ||+||++||++ +|.+ |..+....+..+
T Consensus 204 ~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~-~------kg~~~~~~p~~--~G~~~g~~~~~~~~~~l 274 (568)
T 2wvg_A 204 KFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAA-A------KSFFPEENPHY--IGTSWGEVSYPGVEKTM 274 (568)
T ss_dssp HHHTTCCCEEEEECTTTTTTTCHHHHHHHHHHHCCEEEEEGG-G------TTSSCTTSTTE--EEEECGGGSCTTHHHHH
T ss_pred HHHHhCCCCEEEECccccccchHHHHHHHHHHhCCCEEEchh-c------CccCCCCCCce--eccccCCcCCHHHHHHH
Confidence 999999999999999986 45678999999999999999998 5 79999999996 6764 666777777778
Q ss_pred CCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHH
Q 041113 159 IQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRAL 238 (983)
Q Consensus 159 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~ 238 (983)
++||+||++|+++.+..+..|....++.++||||.|+.++++++.. ..+++.++++|.+.+.. ....|. .+...
T Consensus 275 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~----~~~~~~~l~~L~~~l~~-~~~~~~-~~~~~ 348 (568)
T 2wvg_A 275 KEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFP----SVHLKDYLTRLAQKVSK-KTGALD-FFKSL 348 (568)
T ss_dssp HHCSEEEEESCCCBTTTTTTTTCCCCTTTEEEECSSEEEETTEEEE----SCCHHHHHHHHHHHCCC-CCHHHH-HHHHT
T ss_pred HhCCEEEEECCCcccccccccccCCCCCcEEEEeCChhhcCCeecC----CCCHHHHHHHHHHhccc-cccchh-hhhhh
Confidence 8999999999999877776565433445799999999988765443 34689999999987643 233453 22211
Q ss_pred HHHHHHHHHhhhc-ccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEe
Q 041113 239 DMMVASEISFQIC-ADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVA 317 (983)
Q Consensus 239 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 317 (983)
.+. ........ .+.++++..+++.|++.+|++++++.|.|+.. |...+++. .+|++|+ .+
T Consensus 349 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~-----~~~~~~~~-~~~~~~~-----------~~ 409 (568)
T 2wvg_A 349 NAG--ELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSW-----FNAQRMKL-PNGARVE-----------YE 409 (568)
T ss_dssp TCC--SCCCCCCCCTTSBCCHHHHHHHHHTTCCTTEEEEECSSHHH-----HHHHTCCC-CTTCEEE-----------CC
T ss_pred hhh--cccccccCCCCCccCHHHHHHHHHHhCCCCCEEEEcCcHHH-----HHHhhccc-CCCCeEE-----------eC
Confidence 100 00000011 23469999999999999999999999999832 33333332 3344443 24
Q ss_pred ecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcc
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPR 396 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~ 396 (983)
+++|+||+ ++|+|+|+++|. +++||+++|||+|+|+++||+|+++ +++|+++||+||++|+|++.++.
T Consensus 410 ~~~g~~G~--~l~~A~G~ala~~~~~vv~i~GDGs~~~~~~el~ta~~--~~l~~~ivv~NN~~~~~~~~~~~------- 478 (568)
T 2wvg_A 410 MQWGHIGW--SVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVR--LKLPVIIFLINNYGYTIEVMIHD------- 478 (568)
T ss_dssp TTTCCTTT--HHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHH--TTCCCEEEEEECSSCHHHHTTSC-------
T ss_pred CCcchhhh--HHHHHHHHHHhCCCCcEEEEEcChhHhccHHHHHHHHH--cCCCcEEEEEECCcceEeeeecc-------
Confidence 67899999 999999999998 8999999999999999999999999 99999999999999999986421
Q ss_pred ccccccccCCCCCHHHHHHHcCC---------ceeeeCCHHHHHHHHHhhhcc-CCCEEEEEEcCcccchHHHHHHHHHH
Q 041113 397 ILDQYFYTTHNISIQNLCLAHGL---------NHVQVKTKVELEEALSMSQHL-GTDRVIEVESCIDANATFHSMLRKFA 466 (983)
Q Consensus 397 ~~~~~~~~~~~~df~~la~a~G~---------~~~~v~~~~eL~~aL~~a~~~-~~p~lIeV~~~~~~~~~~~~~~~~~~ 466 (983)
..+.+.+++||.++|++||+ ++++|++.+||+++|+++++. ++|.||||.+++++.+..++++.+.+
T Consensus 479 ---~~~~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~~~~el~~al~~a~~~~~gp~liev~~~~~~~~~~~~~~~~~~ 555 (568)
T 2wvg_A 479 ---GPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRV 555 (568)
T ss_dssp ---CGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEESBHHHHHHHHHHHHHCCSSCEEEEEECCTTCCCHHHHHHHHHH
T ss_pred ---CCCcCCCCCCHHHHHHHhCCCcccccCCcceEEeCCHHHHHHHHHHHHhcCCCcEEEEEEcCccccCHHHHHHHHHh
Confidence 11234467999999999999 899999999999999999987 89999999999999999999988876
Q ss_pred HHHHH
Q 041113 467 RQSAD 471 (983)
Q Consensus 467 ~~~~~ 471 (983)
.+...
T Consensus 556 ~~~~~ 560 (568)
T 2wvg_A 556 AAANS 560 (568)
T ss_dssp HHHHH
T ss_pred Hhhcc
Confidence 65533
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-51 Score=488.03 Aligned_cols=399 Identities=14% Similarity=0.097 Sum_probs=309.8
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.|++|++.|.+++ |||||+||.|++..+.... ...+.... ... +.+.++.+.+++++
T Consensus 143 ~~~~~l~~A~~~a~~~~-GPV~l~iP~d~~~~~~~~~--------------~~~~~~~~-~~~---~~~~~~~~~i~~~~ 203 (566)
T 2vbi_A 143 SAPAKIDHVIRTALRER-KPAYLDIACNIASEPCVRP--------------GPVSSLLS-EPE---IDHTSLKAAVDATV 203 (566)
T ss_dssp SHHHHHHHHHHHHHHHT-CCEEEEEETTTTTSBCCEE--------------CCCSCSCC-CBC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CCEEEEechhhcCCeecCC--------------CCCcccCC-CCC---CCcchHHHHHHHHH
Confidence 46789999999999986 9999999999765432100 00010000 000 11223456799999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccch-hhhccCcccccc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHL-DHALLSESVKDW 158 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~-g~~~~~~~~~~~ 158 (983)
++|.+||||+|++|+++. .++.+++.+|||++|+||++|++ | ||.||++||++ +|.+ |..+...++..+
T Consensus 204 ~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~-~------~g~~~~~~p~~--~G~~~g~~~~~~~~~~l 274 (566)
T 2vbi_A 204 ALLEKSASPVMLLGSKLRAANALAATETLADKLQCAVTIMAA-A------KGFFPEDHAGF--RGLYWGEVSNPGVQELV 274 (566)
T ss_dssp HHHHTCSCEEEEECTTTTTTTCHHHHHHHHHHHCCEEEEEGG-G------TTSSCTTSTTE--EEEECGGGSCTTHHHHH
T ss_pred HHHHhCCCCEEEECcCccccchHHHHHHHHHHhCCCEEEccc-c------CccCCCCCccc--cccccCccCCHHHHHHH
Confidence 999999999999999986 45678999999999999999998 5 79999999996 6775 666777777788
Q ss_pred CCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHH
Q 041113 159 IQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRAL 238 (983)
Q Consensus 159 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~ 238 (983)
++||+||++|+++.+..+..|....++.++||||.|+.++++++..+ .+++.++++|.+.+... ...|. .+...
T Consensus 275 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~----~~~~~~l~~L~~~l~~~-~~~~~-~~~~~ 348 (566)
T 2vbi_A 275 ETSDALLCIAPVFNDYSTVGWSAWPKGPNVILAEPDRVTVDGRAYDG----FTLRAFLQALAEKAPAR-PASAQ-KSSVP 348 (566)
T ss_dssp HTCSEEEEESCCCBTTTTTTTTSCCCSTTEEEECSSEEEETTEEEES----SCHHHHHHHHHHHCCCC-CHHHH-TSCCC
T ss_pred HhCCEEEEECCCccccccccccccCCCCcEEEEeCChheeCCcccCC----ccHHHHHHHHHHhcccc-ccchh-hhhhh
Confidence 99999999999998887766654434557999999999888654433 35899999998876432 23442 12110
Q ss_pred HHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEee
Q 041113 239 DMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAG 318 (983)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 318 (983)
.. ... ....+.++++..+++.|++.+|++++++.|.|+ + .|...+++. ..|++|+ .++
T Consensus 349 ~~----~~~-~~~~~~~l~~~~~~~~l~~~l~~~~iv~~d~G~----~-~~~~~~~~~-~~~~~~~-----------~~~ 406 (566)
T 2vbi_A 349 TC----SLT-ATSDEAGLTNDEIVRHINALLTSNTTLVAETGD----S-WFNAMRMTL-PRGARVE-----------LEM 406 (566)
T ss_dssp CC----CCC-CCCTTSCCCHHHHHHHHHHHCCTTEEEEECSSH----H-HHHHHTCCC-CTTCEEE-----------CCT
T ss_pred hh----ccC-CCCCCCccCHHHHHHHHHHhcCCCCEEEECCch----H-HHhhhheEC-CCCCEEE-----------ecC
Confidence 00 000 011234699999999999999999999999998 3 244444332 3344443 246
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
++|+||+ ++|+|+|+++|. +++||+++|||+|+|+++||+|+++ +++|+++||+||++|+|++.++.
T Consensus 407 ~~g~mG~--~l~~A~G~ala~~~~~vv~~~GDG~~~~~~~eL~ta~~--~~l~~~ivv~nN~~~~~~~~~~~-------- 474 (566)
T 2vbi_A 407 QWGHIGW--SVPSAFGNAMGSQDRQHVVMVGDGSFQLTAQEVAQMVR--YELPVIIFLINNRGYVIEIAIHD-------- 474 (566)
T ss_dssp TTCCTTT--HHHHHHHHHHTCTTSEEEEEEEHHHHHHHGGGHHHHHH--TTCCCEEEEEECSSCHHHHTTSC--------
T ss_pred cccchhh--HHHHHHHHHHhCCCCcEEEEEcchHHHhhHHHHHHHHH--hCCCcEEEEEECCcceEEEeecc--------
Confidence 7899999 999999999998 8999999999999999999999999 99999999999999999976421
Q ss_pred cccccccCCCCCHHHHHHHcCC-----ceeeeCCHHHHHHHHHhhhcc-CCCEEEEEEcCcccchHHHHHHHHHHHHH
Q 041113 398 LDQYFYTTHNISIQNLCLAHGL-----NHVQVKTKVELEEALSMSQHL-GTDRVIEVESCIDANATFHSMLRKFARQS 469 (983)
Q Consensus 398 ~~~~~~~~~~~df~~la~a~G~-----~~~~v~~~~eL~~aL~~a~~~-~~p~lIeV~~~~~~~~~~~~~~~~~~~~~ 469 (983)
..+.+.+++||.++|++||+ ++++|++.+||+++|+++++. ++|.||||.+++++.+..++++.+.+.+.
T Consensus 475 --~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~~~~el~~al~~a~~~~~gp~liev~~~~~~~~~~~~~~~~~~~~~ 550 (566)
T 2vbi_A 475 --GPYNYIKNWDYAGLMEVFNAGEGHGLGLKATTPKELTEAIARAKANTRGPTLIECQIDRTDCTDMLVQWGRKVAST 550 (566)
T ss_dssp --CGGGCCCCCCTTTHHHHHHTTTCCCEEEEECSHHHHHHHHHHHHHCCSSCEEEEEECCTTCCCHHHHHHHHHHHHH
T ss_pred --CCccCCCCCCHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHHHHhcCCCcEEEEEEeCcccCcHHHHHHHHHhhhh
Confidence 12334467999999999999 999999999999999999987 99999999999999999999988876655
|
| >3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2, NYSGXRC, target 9462A, protein structure initiative; 1.87A {Bdellovibrio bacteriovorus HD100} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-49 Score=435.34 Aligned_cols=306 Identities=19% Similarity=0.207 Sum_probs=238.5
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCc-CcccHHHHHHHHHHHHhHhccC
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEI-HKENLLDAEEQLRFLLHFMTGA 571 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~-~~~~~~~~~~~l~~~~~~l~g~ 571 (983)
|||+ ++.+++||+.||.++ +.. +.++.++|||+|++|++||||+.+.+. +.+++.. .+. +.+.
T Consensus 2 MkI~---~~~~~~pl~~p~~~s-~~~----~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~---~l~---~~ll-- 65 (330)
T 3caw_A 2 IKIS---YSPYTLKPVQSLNAA-TAA----TAREGVLLKVEWNDGLYGFADLHPWPELGDLSLEE---QLS---DLRM-- 65 (330)
T ss_dssp -CEE---EEEEEECBC---------------CEEEEEEEEECTTSCEEEEEECCCGGGTCCCHHH---HHH---HHHH--
T ss_pred cEEE---EEEEEeecCCCeEee-eEE----EEeeEEEEEEEECCCCEEEEeecCCCCcCcccHHH---HHH---HHHh--
Confidence 8999 889999999999998 654 448999999999999999999988653 4555432 222 1110
Q ss_pred cccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeec
Q 041113 572 KISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALID 651 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~ 651 (983)
+ ...++|++|||+||||++||..|+|||+ || . +|++|++++
T Consensus 66 ---------------------~----~~~~~a~said~AlwDl~gk~~g~Pl~~--Gg-~-----------~v~~~~~~~ 106 (330)
T 3caw_A 66 ---------------------G----RMTTQIEQSIWLARRDALLRKEKKHVFD--GG-E-----------KIKNNYLLS 106 (330)
T ss_dssp ---------------------T----CCCHHHHHHHHHHHHHHHHHHTTCBTTT--TS-C-----------CCCBCEEEC
T ss_pred ---------------------c----cchHHHHHHHHHHHHHHHHHHcCCcccc--CC-C-----------ceEEEEEec
Confidence 1 1246899999999999999999999999 77 3 377788774
Q ss_pred CC--CCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhccc---
Q 041113 652 SN--KSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD--- 726 (983)
Q Consensus 652 ~~--~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~--- 726 (983)
.. .+++++. +++++||++||+|+|. ++++|+++|++||+ +++.||+|+|++||+++|+++++.|++
T Consensus 107 ~~~~~~~~~~~----~~~~~G~~~~KiKvg~--~~~~d~~~v~avr~---~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~ 177 (330)
T 3caw_A 107 HFQDLKPGFLD----GLKNEGYNTVKVKMGR--DLQKEADMLTHIAA---SGMRMRLDFNALGSWQTFEKFMVNLPLTVR 177 (330)
T ss_dssp TTSCCCTTHHH----HHHHHTCCEEEEECSS--CHHHHHHHHHHHHH---TTCEEEEECTTCSCHHHHHHHHHTSCTTTG
T ss_pred CCCCCCHHHHH----HHHHcCCcEEEEecCC--CHHHHHHHHHHHhC---CCCeEEEECCCCCCHHHHHHHHHHhhhhcc
Confidence 23 5677666 6667899999999997 78999999999999 899999999999999999999999999
Q ss_pred CCCceeecCCCChH-HHH-HHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHH
Q 041113 727 CDLQYIEEPVQNEE-DII-KYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQR 803 (983)
Q Consensus 727 ~~i~~iEeP~~~~~-~~~-~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~ 803 (983)
+++.|||||++ .+ ++. .|+ ++ +|||+||+ +..+ +..+++.+ +|++|+|++++ |++ +++++|++
T Consensus 178 ~~l~~iEqP~~-~~~d~~~~l~-~~-iPIa~dEs--~~~~-----~~~~i~~~a~d~v~~k~~~~-Gi~---~i~~~A~~ 243 (330)
T 3caw_A 178 PLIEYVEDPFP-FDFHAWGEAR-KL-AKIALDNQ--YDKV-----PWGKIASAPFDVIVIKPAKT-DVD---KAVAQCQK 243 (330)
T ss_dssp GGEEEEECCSS-CCHHHHHHHT-TT-SCEEESTT--GGGC-----CTTTCSSCSCSEEEECTTTS-CHH---HHHHHHHH
T ss_pred CCceEEECCCC-CCccHHHHHH-hc-CcEEeCCC--CHHH-----HHHHHHcCCCCEEEechhhc-cHH---HHHHHHHH
Confidence 99999999998 33 322 277 88 99999999 6654 56666544 79999999999 999 99999999
Q ss_pred cCCcEEeCCCCchHHHHHHHHHHHh----hchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCC
Q 041113 804 HGKMAVVSAAFESGLGLSAYIIFSS----YLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSC 875 (983)
Q Consensus 804 ~gi~~~~~~~~es~ig~~a~~~laa----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~ 875 (983)
+|+++++|+++||+||.++++|+++ +++|.. .....+++.. +.+|++.+|+.+++ +|+
T Consensus 244 ~gi~~~~~~~~es~ig~aa~~hlaa~~~~a~~~~~-------------~~~~dl~~~~-~~~d~~~~~~~~~~G~~~~p~ 309 (330)
T 3caw_A 244 WNLKLAVTSYMDHPVGVVHAVGVAMELKDKYGDMI-------------LESGCLTHRL-YQMDSFAAELSTQGPYLLKNK 309 (330)
T ss_dssp TTCEEEEBCCSCCHHHHHHHHHHHHHHHHHHGGGB-------------CCBBCCCGGG-BCCCTTGGGCCEETTEECCCS
T ss_pred cCCcEEEeCccCcHHHHHHHHHHHccchhcCCCcc-------------cccccCCchh-hhcccccCCceeECCEEECCC
Confidence 9999999999999999999999999 888531 0111133333 36788778888874 899
Q ss_pred CCeeeEEecchhhhhhhccc
Q 041113 876 RGFVEASVAKATHILQNLQI 895 (983)
Q Consensus 876 ~pGlGv~~d~a~~~~~~~~~ 895 (983)
+||||++ +.++++..
T Consensus 310 ~PGlGv~-----~~~~~~~~ 324 (330)
T 3caw_A 310 GTGVGFD-----KLLEALTW 324 (330)
T ss_dssp SSBTSCH-----HHHHTSCC
T ss_pred CCCCCHH-----HHHHHhhh
Confidence 9999997 35566553
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-50 Score=478.84 Aligned_cols=400 Identities=15% Similarity=0.093 Sum_probs=296.2
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.+++|++.|.+++||||||+||+|....+... . .+.. ........ . +...++++.+++++
T Consensus 142 ~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~--~--------~~~~--~~~~~~~~-~---~~~~~~~~~i~~~~ 205 (564)
T 2q28_A 142 DLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEK--D--------EALT--TIVKVENP-S---PALLPCPKSVTSAI 205 (564)
T ss_dssp GHHHHHHHHHHHHHSSSCCEEEEEEEHHHHHCEEEH--H--------HHHH--TCCCCSCS-S---CCEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEcCHHHhhccccc--c--------cccc--ccccccCC-C---CCCCCCHHHHHHHH
Confidence 368899999999999999999999999842111000 0 0000 00000000 0 11235667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+++. .++.+++.+|||++|+||++|++ | ||++|++||++ +|.. .+..++
T Consensus 206 ~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~-~------~g~~~~~hp~~--~G~~-------~~~~l~ 269 (564)
T 2q28_A 206 SLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPFLPMSM-A------KGILEDTHPLS--AAAA-------RSFALA 269 (564)
T ss_dssp HHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECGG-G------TTSSCTTCTTB--CGGG-------HHHHHH
T ss_pred HHHHcCCCcEEEECcccccccHHHHHHHHHHHhCCCEEeccC-c------cccCCCCChhh--cChH-------HHhHhh
Confidence 999999999999999875 45568999999999999999998 5 79999999996 4542 234678
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC---CCChhHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP---HRSSKWCSFL 235 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~---~~~~~w~~~~ 235 (983)
+||+||++|+++.+..+.++ ..+. ..++||||+|+.+++++++.++.+.+|++.+|++|.+.+.. .....|.+.+
T Consensus 270 ~aDlvl~iG~~~~~~~~~~~-~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~w~~~~ 348 (564)
T 2q28_A 270 NADVVMLVGARLNWLLAHGK-KGWAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELKQNTFTTPLVWRDIL 348 (564)
T ss_dssp HCSEEEEESCCCSGGGGGGT-TTSCTTCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHHHSCCCCCHHHHHHH
T ss_pred cCCEEEEECCcccccccccc-cccCCCCeEEEEeCCHHHhcCCCCCCeEEEcCHHHHHHHHHHHhhhcCcCCcHHHHHHH
Confidence 99999999999975444333 3333 35799999999999999999999999999999999876532 1245687766
Q ss_pred HHHHHHHHHHHHhhh-cccCCCCHHHHHHHHHhhc--CCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCc
Q 041113 236 RALDMMVASEISFQI-CADYSLTEPHVAHELSRAL--TSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQ 312 (983)
Q Consensus 236 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l--~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 312 (983)
+..++.+........ ....++++..+++.|++.+ |++.+++.|.++.+ .|...++.+ ..|++++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~ivv~dg~~~~----~~~~~~~~~-~~p~~~~-------- 415 (564)
T 2q28_A 349 NIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQDIYLVNEGANTL----DNARNIIDM-YKPRRRL-------- 415 (564)
T ss_dssp HHHHHHHHHHHHHHHTCCCSSBCHHHHHHHHHHHHTTCTTCEEEEESSHHH----HHHHHHSCC-CSSSCEE--------
T ss_pred HHHHHhhhhhhhhhhccCCCCcCHHHHHHHHHHHhcCCCCEEEEECCchHH----HHHHHHhcc-cCCCeEe--------
Confidence 554443322221111 1245799999999999999 88888888866522 122111221 3344332
Q ss_pred ceeEeecCCCCCccchHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCC-ccccCCCCCC
Q 041113 313 WIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGG-AIFSLLPIAD 391 (983)
Q Consensus 313 ~~~~~~~~G~mG~~g~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~-g~~~~~~~~~ 391 (983)
.++++|+||+ |+|+|+|+++|.+++||+++|||||+|++|||+|+++ |++|+++||+||++| ++......
T Consensus 416 ---~~g~~g~~G~--~l~~AiGaa~a~~~~vv~i~GDGsf~~~~~el~ta~~--~~l~~~ivv~NN~~~~~~~~~~~~-- 486 (564)
T 2q28_A 416 ---DCGTWGVMGI--GMGYAIGASVTSGSPVVAIEGDSAFGFSGMEIETICR--YNLPVTIVIFNNGGIYRGDGVDLS-- 486 (564)
T ss_dssp ---ESTTTTCTTC--HHHHHHHHHHHHCSCEEEEEEHHHHHTTGGGHHHHHH--TTCCEEEEEEECSBSSCSCCCCTT--
T ss_pred ---cCCCCCcccc--hHHHHHHHhhcCCCcEEEEEcchHhhccHHHHHHHHH--hCCCeEEEEEeCchhHHHHHHHHh--
Confidence 3578899999 9999999999988999999999999999999999999 999999999999995 55432100
Q ss_pred CCCccccccccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHH
Q 041113 392 RTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATF 458 (983)
Q Consensus 392 ~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~ 458 (983)
. ...+.. ....+++||.++|++||+++++|++.+||+++|+++++.++|+||||.+++.++++.
T Consensus 487 ~--~~~~~~-~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~~~~~~~~~~ 550 (564)
T 2q28_A 487 G--AGAPSP-TDLLHHARYDKLMDAFRGVGYNVTTTDELRHALTTGIQSRKPTIINVVIDPAAGTES 550 (564)
T ss_dssp S--SCCCCT-TBCCTTCCGGGGGGGGTCEEEEECSHHHHHHHHHHHHHHTSCEEEEEEBCTTSSCCC
T ss_pred c--cCCccc-cccCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeccccCCCc
Confidence 0 000111 112357899999999999999999999999999999988999999999998876643
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-50 Score=482.78 Aligned_cols=399 Identities=16% Similarity=0.124 Sum_probs=303.6
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.+++|++.|.+++ |||||+||.|++..+.... ..+.... . +. +.+.++.+.+++++
T Consensus 144 ~~~~~i~~A~~~a~~~~-GPV~l~iP~d~~~~~~~~~---------------~~~~~~~-~-~~--~~~~~~~~~i~~~~ 203 (552)
T 1ovm_A 144 NACYEIDRVLTTMLRER-RPGYLMLPADVAKKAATPP---------------VNALTHK-Q-AH--ADSACLKAFRDAAE 203 (552)
T ss_dssp THHHHHHHHHHHHHHHT-CCEEEEEEHHHHHSBCCCC---------------SSCCCCC-C-CC--CCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCC-CCEEEEeehhhccCccCCC---------------ccccccc-C-CC--CCccchHHHHHHHH
Confidence 46889999999999876 9999999998532111000 0011100 0 00 11234456899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccch-hhhccCcccccc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHL-DHALLSESVKDW 158 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~-g~~~~~~~~~~~ 158 (983)
++|.+||||+||+|+|+. ..+.+++.+|+|++++||++|++ | ||.||++||++ +|.+ |..++...+..+
T Consensus 204 ~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~-~------~g~~~~~hp~~--~G~~~g~~~~~~~~~~l 274 (552)
T 1ovm_A 204 NKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLM-G------KGIFDERQAGF--YGTYSGSASTGAVKEAI 274 (552)
T ss_dssp HHHHTCSCEEEEECHHHHHTTCHHHHHHHHHHSCCEEEECGG-G------TTSSCTTSTTC--CCCCCGGGSCHHHHHHH
T ss_pred HHHHhCCCCEEEECcCccccCHHHHHHHHHHHHCCCEEEccc-c------CccCCCCCcCe--ecccCCCCCCHHHHHHH
Confidence 999999999999999875 45578999999999999999998 5 79999999996 6775 656666677788
Q ss_pred CCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHH
Q 041113 159 IQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRAL 238 (983)
Q Consensus 159 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~ 238 (983)
++||+||+||+++.+..+..|....++.++||||+|+.++++++..+ .+++.++++|.+ +... ...|.+.++.
T Consensus 275 ~~aD~vl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~----~~~~~~l~~L~~-l~~~-~~~~~~~~~~- 347 (552)
T 1ovm_A 275 EGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVGDVWFTG----IPMNQAIETLVE-LCKQ-HVHAGLMSSS- 347 (552)
T ss_dssp HTSSEEEEESCCCCTTTTTTTCCCCCTTTEEEECSSEEEETTEEEES----CCHHHHHHHHHH-HHHT-SCCC-------
T ss_pred HhCCEEEEECCCCCcccccccccCCCCCeEEEEeCChheeCCcccCC----ccHHHHHHHHHh-Cccc-ccchhhhhhh-
Confidence 99999999999998777665543333457999999999888765543 366999999987 5321 2245432221
Q ss_pred HHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEee
Q 041113 239 DMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAG 318 (983)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 318 (983)
.... . ......++++..+++.|++.++++++++.|+|++.+ ...++.+ ..|++|+ .+.
T Consensus 348 --~~~~--~-~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~-----~~~~~~~-~~~~~~~-----------~~~ 405 (552)
T 1ovm_A 348 --SGAI--P-FPQPDGSLTQENFWRTLQTFIRPGDIILADQGTSAF-----GAIDLRL-PADVNFI-----------VQP 405 (552)
T ss_dssp -------------CCSBCCHHHHHHHHHHHCCTTCEEEECTTHHHH-----HHTTCCC-CSSCEEE-----------CCT
T ss_pred --cccc--c-cCCCCCccCHHHHHHHHHHhcCCCCEEEECCchHHH-----HHHhccc-CCCCeEE-----------ech
Confidence 1111 0 011245699999999999999999999999999443 2223332 3444443 357
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
++|+||+ ++|+|+|+++|. +++||+++|||+|+|+++||+|+++ +++|+++||+||++|+|++..+..
T Consensus 406 ~~g~mG~--~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~el~ta~~--~~l~~~ivv~nN~~~~~~~~~~~~------- 474 (552)
T 1ovm_A 406 LWGSIGY--TLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLR--DKQHPIILVLNNEGYTVERAIHGA------- 474 (552)
T ss_dssp TTCCTTH--HHHHHHHHHHHCTTSCEEEEEEHHHHHHHTTHHHHHHH--TTCCCEEEEEESSSCHHHHHHSCT-------
T ss_pred hhHhhhh--HHHHHHHHHHhCCCCcEEEEECchHHHhHHHHHHHHHH--hCCCCEEEEEECCCCeEEEeeccC-------
Confidence 7899999 999999999998 8999999999999999999999999 999999999999999999764211
Q ss_pred cccccccCCCCCHHHHHHHcCC----ceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHHHHHHHHHH
Q 041113 398 LDQYFYTTHNISIQNLCLAHGL----NHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQS 469 (983)
Q Consensus 398 ~~~~~~~~~~~df~~la~a~G~----~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~~~~~~~~~ 469 (983)
...+...+++||.++|++||+ ++++|++.+||+++|+++++.++|+||||.+++++.+..++++++.+++.
T Consensus 475 -~~~~~~~~~~d~~~~a~a~G~~~~~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~~~~~~~l~~~~~~~~~~ 549 (552)
T 1ovm_A 475 -EQRYNDIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAHHERLSLIEVMLPKADIPPLLGALTKALEAC 549 (552)
T ss_dssp -TCGGGCCCCCCGGGSTTTSCSSCCEEEEEECBHHHHHHHHHHHTTCSSEEEEEEECCTTCCCHHHHHHHHHHHHH
T ss_pred -CCCcccCCCCCHHHHHHHhCCCcCCCEEEeCCHHHHHHHHHHHHhCCCCEEEEEEcCcccCCHHHHHHHHHHhhh
Confidence 111223457899999999999 99999999999999999998899999999999999999999998887664
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=486.12 Aligned_cols=403 Identities=14% Similarity=0.100 Sum_probs=301.2
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.|++|++.|.+++ |||||+||+|++..+... . +.. .+.... . + .+.+.++.+.+++++
T Consensus 144 ~~~~~i~~A~~~A~~~~-GPV~l~iP~d~~~~~~~~----~-------~~~--~~~~~~-~-~--~~~~~~~~~~i~~~~ 205 (563)
T 2vk8_A 144 TAPAEIDRCIRTTYVTQ-RPVYLGLPANLVDLNVPA----K-------LLQ--TPIDMS-L-K--PNDAESEKEVIDTIL 205 (563)
T ss_dssp THHHHHHHHHHHHHHHT-SCEEEEEETTGGGSEEEG----G-------GGG--SCCCCS-C-C--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CCEEEEechhhhcCccCC----c-------cCc--Cccccc-C-C--CCCchhhHHHHHHHH
Confidence 36889999999999876 999999999964321100 0 000 000000 0 0 011223456799999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccch-hhhccCcccccc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHL-DHALLSESVKDW 158 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~-g~~~~~~~~~~~ 158 (983)
++|.+||||+|++|+++. .++.+++.+|||++|+||++|++ | ||.||++||++ +|.+ |..++..++..+
T Consensus 206 ~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~-g------~g~~~~~~p~~--~G~~~g~~~~~~~~~~l 276 (563)
T 2vk8_A 206 VLDKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPM-G------KGSIDEQHPRY--GGVYVGTLSKPEVKEAV 276 (563)
T ss_dssp HHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCCCEEECTT-T------TTSSCTTSTTE--EEECCGGGSCHHHHHHH
T ss_pred HHHHhCCCCEEEECcCccccchHHHHHHHHHHhCCCEEECcc-c------CccCCCCCCcc--cccccCccCCHHHHHHH
Confidence 999999999999999875 45678999999999999999998 6 79999999996 6764 556666667778
Q ss_pred CCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHH
Q 041113 159 IQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRAL 238 (983)
Q Consensus 159 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~ 238 (983)
++||+||+||+++++..+..|....++.++||||.|+.++++++..++ +++.++++|.+.+.... ..|.+ +..
T Consensus 277 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~----~~~~~l~~L~~~l~~~~-~~~~~-~~~- 349 (563)
T 2vk8_A 277 ESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIRNATFPGV----QMKFVLQKLLTTIADAA-KGYKP-VAV- 349 (563)
T ss_dssp HTCSEEEEESCCCCTTTTTTTCCCCCCSCEEEECSSEEEETTEEEETC----CHHHHHHHHHHHHHHHT-TTCCC-CCC-
T ss_pred HhCCEEEEECCCCccccccccccCCCCCeEEEEeCCceEECCcccCCc----CHHHHHHHHHHhhcccc-chhhh-hhh-
Confidence 999999999999987776655432334579999999998888655443 57999999986542110 01110 000
Q ss_pred HHHHHHHHHhhh-cccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEe
Q 041113 239 DMMVASEISFQI-CADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVA 317 (983)
Q Consensus 239 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 317 (983)
+........ ....++++..+++.|++.+|++++++.|+|+.. |...++.+ +.|++|+ .+
T Consensus 350 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~-----~~~~~~~~-~~~~~~~-----------~~ 409 (563)
T 2vk8_A 350 ---PARTPANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSA-----FGINQTTF-PNNTYGI-----------SQ 409 (563)
T ss_dssp ---CCCCCCCCCCCTTCBCCHHHHHHHHTTTCCTTCEEEECTTHHH-----HHGGGSCC-CSSCEEE-----------CC
T ss_pred ---hhhcccccCCCCCCCcCHHHHHHHHHHhCCCCCEEEECCchHH-----HHHhhcCc-CCCCeEE-----------cc
Confidence 000000000 123468999999999999999999999999843 23333332 3344433 35
Q ss_pred ecCCCCCccchHHHHHhhhhcc-C----ceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-N----KHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADR 392 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-~----~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~ 392 (983)
+++|+||+ ++|+|+|+++|. + ++||+++|||+|+|+++||+|+++ +++|+++||+||++|+|++.++...
T Consensus 410 ~~~g~mG~--~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~~~el~ta~~--~~l~~~ivv~nN~~~~~~~~~~~~~- 484 (563)
T 2vk8_A 410 VLWGSIGF--TTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIR--WGLKPYLFVLNNDGYTIQKLIHGPK- 484 (563)
T ss_dssp TTTCCTTH--HHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHHGGGHHHHHH--TTCCCEEEEEESSSCHHHHHHSCTT-
T ss_pred cchhhhhh--HHHHHHHHHHhCcccCCCCCEEEEEcchHhhccHHHHHHHHH--cCCCcEEEEEECCcchhhhhhhCCC-
Confidence 78899999 999999999997 6 999999999999999999999999 9999999999999999987542111
Q ss_pred CCccccccccccCCCCCHHHHHHHcCCc---eeeeCCHHHHHHHHH-hhhccC-CCEEEEEEcCcccchHHHHHHHHHHH
Q 041113 393 TEPRILDQYFYTTHNISIQNLCLAHGLN---HVQVKTKVELEEALS-MSQHLG-TDRVIEVESCIDANATFHSMLRKFAR 467 (983)
Q Consensus 393 ~~~~~~~~~~~~~~~~df~~la~a~G~~---~~~v~~~~eL~~aL~-~a~~~~-~p~lIeV~~~~~~~~~~~~~~~~~~~ 467 (983)
..+...+++||.++|++||++ +++|++.+||.++|+ ++++.+ +|+||||.+++++.+..++.+++.+.
T Consensus 485 -------~~~~~~~~~d~~~~a~a~G~~~~~~~~v~~~~el~~al~~~a~~~~~~p~liev~~~~~~~~~~~~~~~~~~~ 557 (563)
T 2vk8_A 485 -------AQYNEIQGWDHLSLLPTFGAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIEVMLPVFDAPQNLVEQAKLTA 557 (563)
T ss_dssp -------CGGGCCCCCCGGGHHHHTTCSSEEEEEECBHHHHHHHHTCTTTTSCSSEEEEEEECCTTCCCHHHHHHHHHHH
T ss_pred -------CCcccCCCCCHHHHHHHhCCCCCcEEEecCHHHHHHHHHHHHHhCCCCcEEEEEEeCccccCHHHHHHHHHhh
Confidence 112233578999999999999 999999999999999 887754 79999999999999999999988776
Q ss_pred HH
Q 041113 468 QS 469 (983)
Q Consensus 468 ~~ 469 (983)
+.
T Consensus 558 ~~ 559 (563)
T 2vk8_A 558 AT 559 (563)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=477.34 Aligned_cols=395 Identities=13% Similarity=0.070 Sum_probs=302.4
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++..+++|++.|.++| |||||+||.|++..+.... ..+.... . +. ..+.+ .+.+++++
T Consensus 164 ~~~~~l~~A~~~A~~~~-GPV~l~iP~d~~~~~~~~~---------------~~~~~~~-~-~~--~~~~~-~~~i~~~~ 222 (570)
T 2vbf_A 164 NATYEIDRVLSQLLKER-KPVYINLPVDVAAAKAEKP---------------ALSLEKE-S-ST--TNTTE-QVILSKIE 222 (570)
T ss_dssp THHHHHHHHHHHHHHHC-CCEEEEEEHHHHTSBCCCC---------------SSCCC----------CHHH-HHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCC-CCEEEEcchhhhcCcccCC---------------ccccccc-C-CC--CCccH-HHHHHHHH
Confidence 47889999999999976 9999999999654332110 0011100 0 00 01112 56799999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccch-hhhccCcccccc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHL-DHALLSESVKDW 158 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~-g~~~~~~~~~~~ 158 (983)
++|.+||||+|++|+|+. ..+.+++.+|||++++||++|++ | ||.||++||++ +|.+ |..++...+..+
T Consensus 223 ~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~-~------~g~~~~~~p~~--~G~~~g~~~~~~~~~~l 293 (570)
T 2vbf_A 223 ESLKNAQKPVVIAGHEVISFGLEKTVTQFVSETKLPITTLNF-G------KSAVDESLPSF--LGIYNGKLSEISLKNFV 293 (570)
T ss_dssp HHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCCCEEECST-T------TTSSCTTSTTE--EEECCGGGSCHHHHHHH
T ss_pred HHHHcCCCCEEEECcCccccChHHHHHHHHHHHCCCEEECcc-c------CccCCCCCcCc--cCCcCCCcCCHHHHHHH
Confidence 999999999999999876 34568999999999999999998 6 79999999996 6765 555555566678
Q ss_pred CCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHH
Q 041113 159 IQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRAL 238 (983)
Q Consensus 159 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~ 238 (983)
++||+||+||+++.+..+..|....++.++||||.|+.++++++..+ .|++.++++|.+.+.... |. +...
T Consensus 294 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~----~~~~~~l~~L~~~l~~~~---~~--~~~~ 364 (570)
T 2vbf_A 294 ESADFILMLGVKLTDSSTGAFTHHLDENKMISLNIDEGIIFNKVVED----FDFRAVVSSLSELKGIEY---EG--QYID 364 (570)
T ss_dssp HHCSEEEEESCCCCGGGTTTTCCCCCGGGEEEECSSCEEETTEEECS----SCHHHHHHTGGGCCSCCC---CS--CCCC
T ss_pred HhCCEEEEECCCcccccccccccCCCCCeEEEEeCCHHHhCCeeecC----CCHHHHHHHHHHhccccc---cc--cchh
Confidence 89999999999998877765543333457999999999888765443 479999999988664321 31 1100
Q ss_pred HHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEee
Q 041113 239 DMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAG 318 (983)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 318 (983)
. ..........++++..+++.|++.+|++++++.|.|+ +. |...++.+ +.|++|+ .++
T Consensus 365 ~-----~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~----~~-~~~~~~~~-~~~~~~~-----------~~~ 422 (570)
T 2vbf_A 365 K-----QYEEFIPSSAPLSQDRLWQAVESLTQSNETIVAEQGT----SF-FGASTIFL-KSNSRFI-----------GQP 422 (570)
T ss_dssp C-----CCCCCCCCSSBCCHHHHHHHHHHHCCSSEEEEECTTH----HH-HHHTTSCC-CTTCEEE-----------CCT
T ss_pred h-----hccccCCCCCCcCHHHHHHHHHHhcCCCCEEEEeCCH----HH-HHHHhccc-CCCCeEe-----------cCc
Confidence 0 0000011234699999999999999999999999998 32 22223332 3444433 357
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
++|+||+ ++|+|+|+++|. +++||+++|||+|+|++|||+|+++ +++|+++||+||++|+|++.++..
T Consensus 423 ~~g~mG~--~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~eL~ta~~--~~l~~~ivv~nN~~~~~~~~~~~~------- 491 (570)
T 2vbf_A 423 LWGSIGY--TFPAALGSQIADKESRHLLFIGDGSLQLTVQELGLSIR--EKLNPICFIINNDGYTVEREIHGP------- 491 (570)
T ss_dssp TTCCTTT--HHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHH--TTCCCEEEEEESSSCHHHHHHSCT-------
T ss_pred cchhhhh--hHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHH--cCCCCEEEEEECCchHHHHHHhcc-------
Confidence 7899999 999999999998 8999999999999999999999999 999999999999999999764221
Q ss_pred cccccccCCCCCHHHHHHHcCCc-----eeeeCCHHHHHHHHHh-hhccCCCEEEEEEcCcccchHHHHHHHHHHHH
Q 041113 398 LDQYFYTTHNISIQNLCLAHGLN-----HVQVKTKVELEEALSM-SQHLGTDRVIEVESCIDANATFHSMLRKFARQ 468 (983)
Q Consensus 398 ~~~~~~~~~~~df~~la~a~G~~-----~~~v~~~~eL~~aL~~-a~~~~~p~lIeV~~~~~~~~~~~~~~~~~~~~ 468 (983)
+..+.+.+++||.++|++||++ +.+|++.+||+++|++ +++.++|.||||.+++++.+..++++++.+++
T Consensus 492 -~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~~~~el~~al~~a~~~~~~p~liev~~~~~~~~~~~~~~~~~~~~ 567 (570)
T 2vbf_A 492 -TQSYNDIPMWNYSKLPETFGATEDRVVSKIVRTENEFVSVMKEAQADVNRMYWIELVLEKEDAPKLLKKMGKLFAE 567 (570)
T ss_dssp -TCGGGCCCCCCGGGHHHHTTCCTTTEEEEEECBHHHHHHHHHHHHHCTTSEEEEEEECCTTCCCHHHHHHHHHHHH
T ss_pred -CCCccCCCCCCHHHHHHHcCCCcCCcceEEecCHHHHHHHHHHHHhcCCCcEEEEEEcCcccccHHHHHHHHHhhh
Confidence 1112334679999999999998 8999999999999998 46788999999999999999999998887654
|
| >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-47 Score=432.61 Aligned_cols=270 Identities=17% Similarity=0.140 Sum_probs=219.0
Q ss_pred eeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCcccccccccccCchhhhhhhcCC-CCCcchhh
Q 041113 524 CREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGI-PACEIFPS 602 (983)
Q Consensus 524 ~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 602 (983)
.++.++|+|+|++|++||||+.+. +.. .....+.+.|.|+|+++.++..++..+... ..+. ...+..++
T Consensus 68 ~~~~v~V~v~td~G~~G~GE~~~g----~~~--~~~v~~~l~p~LiG~d~~~~~~i~~~m~~~----~~~~~g~~~~~~~ 137 (415)
T 2p3z_A 68 VLGTLIVEVEAENRQTGFAVSTAG----EMG--CFIVEKHLNRFIEGKCVSDIKLIHDQMLGA----TMYYSGSGGLVMN 137 (415)
T ss_dssp SSCEEEEEEEETTSCEEEEEEECH----HHH--HHHHHHTTHHHHTTSBTTCHHHHHHHHHHH----HTTTSTTSSHHHH
T ss_pred cceEEEEEEEECCCCEEEEEecCC----HHH--HHHHHHHHHHHHCCCChhhHHHHHHHHHHh----hhcccCCCcchHH
Confidence 477999999999999999999642 221 122234588999999988866555322110 1111 12244678
Q ss_pred HHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC-
Q 041113 603 VRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR- 681 (983)
Q Consensus 603 a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~- 681 (983)
|++|||+||||++||.+|+|||+||||.. +++|++|++. .++++ .++.||+++|+|+|..
T Consensus 138 A~said~ALwDl~ak~~g~Pl~~lLGG~~---------~~~vp~y~~g---~~~~~-------~~~~G~~~~KiK~g~g~ 198 (415)
T 2p3z_A 138 TISCVDLALWDLFGKVVGLPVYKLLGGAV---------RDEIQFYATG---ARPDL-------AKEMGFIGGKMPTHWGP 198 (415)
T ss_dssp HHHHHHHHHHHHHHHHHTCBHHHHTTCCS---------SSEEEEEEES---SCHHH-------HHHHTCSEEEEECCCCG
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHcCCCC---------CCceeeeecC---CCHHH-------HHHhCcceEEEecccCc
Confidence 99999999999999999999999999975 4679998762 34542 3457999999999631
Q ss_pred ----CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcC--CcE
Q 041113 682 ----ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESG--LPV 753 (983)
Q Consensus 682 ----~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~--ipI 753 (983)
.++++|+++|++||+++|+++.|++|+|++|++++|+++++.|+++++.|||||++ |++++++|+++++ +||
T Consensus 199 ~~G~~~~~~d~~~v~avrea~G~~~~L~vDaN~~~~~~~Ai~~~~~l~~~~i~~iEqPl~~~d~~~~~~l~~~~~~~ipI 278 (415)
T 2p3z_A 199 HDGDAGIRKDAAMVADMREKCGPDFWLMLDCWMSQDVNYATKLAHACAPFNLKWIEECLPPQQYEGYRELKRNAPAGMMV 278 (415)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGTCCEEECCSCTTCHHHHHHHHHHSCTTCEE
T ss_pred ccccccHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCceEeCCCCcchHHHHHHHHHhcCCCCcE
Confidence 13578999999999999999999999999999999999999999999999999998 8899999999988 999
Q ss_pred EeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhh
Q 041113 754 ALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQ 833 (983)
Q Consensus 754 a~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~ 833 (983)
++||++++.. .++.+++.++|++|+|++++||++++++++++|+++|+++++|++ ..+++|++++++|+
T Consensus 279 a~dE~~~~~~-----~~~~~i~~~~d~i~ik~~~~GGitea~~ia~lA~~~gi~v~~h~~------~~a~~hlaaa~p~~ 347 (415)
T 2p3z_A 279 TSGEHHGTLQ-----SFRTLAETGIDIMQPDVGWCGGLTTLVEIAALAKSRGQLVVPHGS------SVYSHHAVITFTNT 347 (415)
T ss_dssp EECTTCCSHH-----HHHHHHHTTCSEECCCHHHHTCHHHHHHHHHHHHHTTCCBCCCCC------HHHHHHHHTTCTTC
T ss_pred EcCCCCCCHH-----HHHHHHHcCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCh------HHHHHHHHHhCCCC
Confidence 9999999865 366665545999999999999999999999999999999887543 24689999999964
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-49 Score=469.44 Aligned_cols=392 Identities=14% Similarity=0.087 Sum_probs=298.8
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.+++|++.|.++ +|||||+||.|....+..+. .+... .. +.+.+.++.+++++
T Consensus 160 ~~~~~i~~A~~~A~~~-~GPV~l~iP~Dv~~~~~~~~----------------~~~~~----~~--~~~~~~~~~i~~~~ 216 (565)
T 2nxw_A 160 KAPAEIARVLGAARAQ-SRPVYLEIPRNMVNAEVEPV----------------GDDPA----WP--VDRDALAACADEVL 216 (565)
T ss_dssp THHHHHHHHHHHHHHH-TCCEEEEEEGGGTTCBCCCC----------------CCCCC----CC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCCEEEECChhhhcCcCCCc----------------cccCC----CC--CCchhhHHHHHHHH
Confidence 4678999999999986 69999999988532221100 00000 00 01123446789999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccc-hhhhccCcccccc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDH-LDHALLSESVKDW 158 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~-~g~~~~~~~~~~~ 158 (983)
++|.+||||+|++|+++. .++.+++.+|||++|+||++|++ | ||.+|++||++ +|. .|..++..++..+
T Consensus 217 ~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~-~------~g~~~~~~p~~--~G~~~g~~~~~~~~~~l 287 (565)
T 2nxw_A 217 AAMRSATSPVLMVCVEVRRYGLEAKVAELAQRLGVPVVTTFM-G------RGLLADAPTPP--LGTYIGVAGDAEITRLV 287 (565)
T ss_dssp HHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCSCEEECGG-G------TTTTTTSSSCC--SCBCCGGGSCHHHHHHH
T ss_pred HHHHcCCCCEEEECCCcchhchHHHHHHHHHHhCCCEEECcc-c------CccCCCCCCcc--ccccCcccCCHHHHHHH
Confidence 999999999999999875 34578999999999999999998 5 79999999996 676 4656666666778
Q ss_pred CCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHH
Q 041113 159 IQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRAL 238 (983)
Q Consensus 159 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~ 238 (983)
++||+||++|+++.+..+..|...+.+.++||||.|+.++++++..+ ..+..++++|.+.+... ...|.....
T Consensus 288 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~i~~d~~~~~~~~~~~----~~~~~~l~~L~~~l~~~-~~~w~~~~~-- 360 (565)
T 2nxw_A 288 EESDGLFLLGAILSDTNFAVSQRKIDLRKTIHAFDRAVTLGYHTYAD----IPLAGLVDALLERLPPS-DRTTRGKEP-- 360 (565)
T ss_dssp HTCSEEEEESCCBCSSTTSBCTTTSCGGGEEEEETTEEEETTEEEES----CCHHHHHHHHHHTSCCC-CCCCCCSCS--
T ss_pred HhCCEEEEECCCccccccccccccCCCCcEEEEeCCceeeCCcccCC----ccHHHHHHHHHHhcccc-chhhhhhhh--
Confidence 99999999999998777654544444567999999998887654333 34578999998765432 233432100
Q ss_pred HHHHHHHHHhhh-cccCCCCHHHHHHHHHhhcCC--CceE-EEecCcchhhhhhhcCCCcccccccccccccCCCCCcce
Q 041113 239 DMMVASEISFQI-CADYSLTEPHVAHELSRALTS--NSAL-FVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWI 314 (983)
Q Consensus 239 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~--~~iv-~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 314 (983)
....... ....++++..+++.|++.+|+ ++++ +.|.|+ +..+...+ .|++|+
T Consensus 361 -----~~~~~~~~~~~~~l~~~~v~~~l~~~l~~~~~~iv~~~d~G~----~~~~~~~~-----~~~~~~---------- 416 (565)
T 2nxw_A 361 -----HAYPTGLQADGEPIAPMDIARAVNDRVRAGQEPLLIAADMGD----CLFTAMDM-----IDAGLM---------- 416 (565)
T ss_dssp -----SCCCCCCCCSSSBCCHHHHHHHHHHHHHTTCCCCEEEECSSH----HHHHHTTS-----CCSCEE----------
T ss_pred -----hhccccccCCCCccCHHHHHHHHHHhcccccCCEEEEecchH----HHHHHHhC-----CCcEEE----------
Confidence 0000001 123469999999999999999 9998 899998 32222211 233333
Q ss_pred eEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCC
Q 041113 315 RVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRT 393 (983)
Q Consensus 315 ~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~ 393 (983)
.++++|+||+ |+|+|+|+++|. +++||+++|||+|+|+++||+|+++ +++|++|||+||++|++++..+..
T Consensus 417 -~~~~~g~mG~--~l~~A~G~ala~~~~~vv~i~GDG~~~~~~~~l~ta~~--~~l~~~ivv~nN~~~~~~~~~~~~--- 488 (565)
T 2nxw_A 417 -APGYYAGMGF--GVPAGIGAQCVSGGKRILTVVGDGAFQMTGWELGNCRR--LGIDPIVILFNNASWEMLRTFQPE--- 488 (565)
T ss_dssp -CCTTTCCTTC--HHHHHHHHHHHTTTCCEEEEEEHHHHHHHGGGGGGHHH--HTCCCEEEEEECSBCHHHHHHCTT---
T ss_pred -ccCccccccc--cchHHHHHHHhCCCCcEEEEEechHHHhhHHHHHHHHH--hCCCCEEEEEECCCCcEEeeeccc---
Confidence 3577899999 999999999998 8999999999999999999999999 999999999999999998653110
Q ss_pred CccccccccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCE-EEEEEcCcccchHHHHHHHHHHHHH
Q 041113 394 EPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDR-VIEVESCIDANATFHSMLRKFARQS 469 (983)
Q Consensus 394 ~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~-lIeV~~~~~~~~~~~~~~~~~~~~~ 469 (983)
. .+...+++||.++|++||+++++|++.+||+++|+++++.++|. ||||.+++++.++.++++++.+++.
T Consensus 489 --~----~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~~liev~~~~~~~~~~~~~~~~~~~~~ 559 (565)
T 2nxw_A 489 --S----AFNDLDDWRFADMAAGMGGDGVRVRTRAELKAALDKAFATRGRFQLIEAMIPRGVLSDTLARFVQGQKRL 559 (565)
T ss_dssp --C----GGGBCCCCCHHHHTGGGTSEEEEECBHHHHHHHHHHHHHCCSSCEEEEEECCTTCCCHHHHHHHHHHHHC
T ss_pred --C----CCCcCCCCCHHHHHHHcCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEEEEcccccCCHHHHHHHHHHHHh
Confidence 1 12233578999999999999999999999999999999888998 9999999999999999998877654
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-47 Score=421.10 Aligned_cols=295 Identities=21% Similarity=0.290 Sum_probs=242.4
Q ss_pred EEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHHHHHhHhccCcccc
Q 041113 497 RMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLRFLLHFMTGAKISY 575 (983)
Q Consensus 497 ~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~~~~~~l~g~~~~~ 575 (983)
+|+++.+++||+.||.++.+.. ..++.++|||+|++|++||||+.|.+ ++.+++..+...++.+.+.+ ++.+
T Consensus 4 ~i~~~~~~~pl~~p~~~s~~~~----~~~~~~lV~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~l~~~l---~~~~ 76 (332)
T 2ozt_A 4 RWQWRIYEEPLQEPLTTAQGVW----RSRSGIYLRLEDEQGQVGYGEIAPLPGWGSETLNADIALCQQLPGHL---TPEI 76 (332)
T ss_dssp EEEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEECTTSCEEEEEECCCTTSSSCCHHHHHHHHHHSCSEE---CHHH
T ss_pred EEEEEEEEeecCCCcEecCEEE----EeeeEEEEEEEECCCCEEEEEecCCCCCCcccHHHHHHHHHHhhccC---CHHH
Confidence 7899999999999999988754 45899999999999999999998875 34566655444333332222 2222
Q ss_pred cccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCCC
Q 041113 576 FLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKS 655 (983)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~ 655 (983)
+..++. ..+.+++|||+||| +.|| ||+.. + + +.|++. ..+
T Consensus 77 ~~~~~~-----------------~~~~a~~aid~Al~-l~gk---------lgg~~---------~-~-~~y~~~--~~~ 116 (332)
T 2ozt_A 77 MATIPE-----------------ALPAAQFGFATAWQ-SVGR---------LPYRV---------R-P-WPICAL--LGS 116 (332)
T ss_dssp HTTSCT-----------------TCHHHHHHHHHHHH-HTTT---------CSCCC---------C-C-CCBCEE--ECT
T ss_pred HHHHHH-----------------HhHHHHHHHHHHHH-Hhcc---------cCCCC---------C-C-cceEEe--cCC
Confidence 222111 12568999999999 8888 56654 2 3 445443 246
Q ss_pred HHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccC---CCcee
Q 041113 656 PVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC---DLQYI 732 (983)
Q Consensus 656 ~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~---~i~~i 732 (983)
++++.+++++++++||++||+|+|. .++++|+++|++||+++|+++.|+||+|++||+++|+++++.|+++ ++.||
T Consensus 117 ~e~~~~~a~~~~~~G~~~~KiKvg~-~~~~~d~~~v~avr~~~g~~~~L~vDaN~~~~~~~A~~~~~~l~~~~~~~i~~i 195 (332)
T 2ozt_A 117 GQAALEQWQQSWQRGQTTFKWKVGV-MSPEEEQAILKALLAALPPGAKLRLDANGSWDRATANRWFAWLDRHGNGKIEYV 195 (332)
T ss_dssp GGGHHHHHHHHHHTTCCEEEEECSS-SCHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHHHHHCCTTEEEE
T ss_pred hHHHHHHHHHHHHcCCcEEEEEeCC-CChHHHHHHHHHHHHHcCCCCEEEEcccCCCCHHHHHHHHHHHHhhccCCccee
Confidence 7889999999999999999999996 3689999999999999999999999999999999999999999999 99999
Q ss_pred ecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHc--CCc
Q 041113 733 EEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRH--GKM 807 (983)
Q Consensus 733 EeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~--gi~ 807 (983)
|||++ |++++++|++++++||++||++++..+ +..+++.+ ++++++|++++||++ +++++|+++ |++
T Consensus 196 EqP~~~~d~~~~~~l~~~~~ipIa~dEs~~~~~~-----~~~~~~~~a~~~i~ik~~~~GGi~---~i~~~A~~~~~gi~ 267 (332)
T 2ozt_A 196 EQPLPPDQWQALLSLAQTVTTAIALDESVVSAAE-----VQRWVDRGWPGFFVIKTALFGDPD---SLSLLLRRGLEPQR 267 (332)
T ss_dssp ECCSCTTCHHHHHHHHHHCSSCEEESTTCCSHHH-----HHHHHHTTCCSEEEECHHHHSCHH---HHHHHHHTTCCGGG
T ss_pred ECCCCCCCHHHHHHHHHhCCCCEEeCCCCCCHHH-----HHHHHHhCCCCEEEEChhhhCCHH---HHHHHHHHhCCCCc
Confidence 99998 789999999999999999999998753 66666655 689999999999997 678899999 999
Q ss_pred EEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhccccc
Q 041113 808 AVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKED 862 (983)
Q Consensus 808 ~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d 862 (983)
++++|++||+|++++++||+++++| ..++|+++..||.+|
T Consensus 268 ~~~~~~~es~i~~aa~~hlaa~~~~---------------~~~~gl~t~~~~~~~ 307 (332)
T 2ozt_A 268 LVFSSALEGAIARTAIFHLLETWQP---------------CHALGFGVDRWRSAP 307 (332)
T ss_dssp EEEBCCSCCHHHHHHHHHHHHHHCC---------------CSCBBCCCTTTCCCC
T ss_pred EEEeCCcchHHHHHHHHHHHHhCCC---------------CcCCcCCchhhcccC
Confidence 9999999999999999999999873 456789998888764
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-47 Score=434.13 Aligned_cols=306 Identities=14% Similarity=0.166 Sum_probs=246.9
Q ss_pred CCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCc-------ccHHHHHHHHHH-HHhHhccCcccccccc
Q 041113 508 CAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHK-------ENLLDAEEQLRF-LLHFMTGAKISYFLPL 579 (983)
Q Consensus 508 ~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~-------~~~~~~~~~l~~-~~~~l~g~~~~~~~~~ 579 (983)
..||.+++++. .+.++.++|+|+|++|++||||+.+.++++ ++...+...++. ++|.|+|+++.++..+
T Consensus 36 ~~P~~~~~~~~---~~~~~~v~V~v~td~G~~G~GE~~~~~~~g~g~~e~~~~~~~~~~~i~~~l~p~L~G~d~~~~~~i 112 (413)
T 1kcz_A 36 GSTVTEGFTQV---RQKGESISVLLVLEDGQVAHGDCAAVQYSGAGGRDPLFLAKDFIPVIEKEIAPKLIGREITNFKPM 112 (413)
T ss_dssp SCCCSTTCSSS---EEECCEEEEEEEETTSCEEEEEECCCTTTTSTTSCSCCCHHHHHHHHHHHTHHHHTTCBCCCHHHH
T ss_pred CCCEEcccceE---eecCcEEEEEEEECCCCEEEEEEccccccccCcccccccHHHHHHHHHHHHHHHHcCCChhhHHHH
Confidence 46888887653 134889999999999999999998764221 233455566664 8999999998876555
Q ss_pred cccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecC--CCCHH
Q 041113 580 LKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDS--NKSPV 657 (983)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~--~~~~~ 657 (983)
+..+ .... .......++|++|||+||||+.||.+|+|||+||||... . ...+++||+|++... ..+++
T Consensus 113 ~~~l-----~~~~-~~g~~~~~~a~~aid~AlwDl~ak~~g~Pl~~lLGg~~~--~--~~~~~~vp~~~~~g~~~~~~~~ 182 (413)
T 1kcz_A 113 AEEF-----DKMT-VNGNRLHTAIRYGITQAILDAVAKTRKVTMAEVIRDEYN--P--GAEINAVPVFAQSGDDRYDNVD 182 (413)
T ss_dssp HHHH-----HHCE-ETTEECCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHS--T--TCCCCCCCEECCCTTCTTHHHH
T ss_pred HHHH-----Hhcc-cCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhccccc--C--cCccCCeeeeEecCccccCCHH
Confidence 4321 1110 011224578999999999999999999999999998410 0 001468999986532 13578
Q ss_pred HHHHHHHHhhhcC-CCEEEEeccCCCC--hHH----HHHHHHHHHHHcCCCcEEEEEcCCC------CCHHHHHHHHhhc
Q 041113 658 EVASIATTLVEEG-FTAIKLKVARRAD--PIK----DAEVIQEVRKKVGHRIELRVDANRN------WTYQEALEFGFLI 724 (983)
Q Consensus 658 ~~~~~~~~~~~~G-~~~~KiKig~~~~--~~~----d~~~v~~vr~~~g~~~~l~vDaN~~------~~~~~a~~~~~~l 724 (983)
++.+++++++++| |++||+|+|.. . +.+ |+++|++||+++|+++.|++|+|++ ||+++|+++++.|
T Consensus 183 ~~~~~a~~~~~~G~~~~~KiKvG~~-~~~~~~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~~~~~~~a~~~~~~L 261 (413)
T 1kcz_A 183 KMIIKEADVLPHALINNVEEKLGLK-GEKLLEYVKWLRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIKAMADYIQTL 261 (413)
T ss_dssp HHHHTTCSEEEECCCCCCCCCCCTT-SHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhheeeccCCC-ccchhhHHHHHHHHHHHHHHhcCCCceEEEecCCCcccccCCCHHHHHHHHHHH
Confidence 8889999898999 99999999962 2 344 8999999999999999999999999 9999999999999
Q ss_pred ccC--CCc-eeecCCC------ChHHHHHHHhh-----cCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcC
Q 041113 725 KDC--DLQ-YIEEPVQ------NEEDIIKYCEE-----SGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIG 789 (983)
Q Consensus 725 ~~~--~i~-~iEeP~~------~~~~~~~l~~~-----~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~G 789 (983)
+++ ++. |||||++ |++++++|+++ +++||++||++++..+ +..+++. .+|++|+|++++|
T Consensus 262 ~~~~~~i~~~iEqP~~~~~~~~d~~~~~~l~~~l~~~g~~ipIa~dE~~~~~~~-----~~~~i~~~a~d~v~ik~~~~G 336 (413)
T 1kcz_A 262 AEAAKPFHLRIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVED-----VKFFTDNKAGHMVQIKTPDLG 336 (413)
T ss_dssp HHHHTTSCEEEECSBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTTCCSHHH-----HHHHHHTTCSSEEEECTGGGS
T ss_pred HhhcCCcceEEecCCCCCCCcccHHHHHHHHHhhhcCCCCCcEEeCCCcCCHHH-----HHHHHHhCCCCEEEeCccccC
Confidence 998 666 9999994 57788999988 8999999999988753 6666654 4799999999999
Q ss_pred CHHHHHHHHHHHHHcCCcEEeCC-CCchHHHHHHHHHHHhhchh
Q 041113 790 GFENAGLIARWAQRHGKMAVVSA-AFESGLGLSAYIIFSSYLEL 832 (983)
Q Consensus 790 Gl~~~~~~~~~A~~~gi~~~~~~-~~es~ig~~a~~~laa~~~~ 832 (983)
|++++++++++|+++|+++++|| ++||++++++++||+++++|
T Consensus 337 Git~a~~i~~~A~~~gi~~~~~~~~~es~i~~~a~~hlaaa~~~ 380 (413)
T 1kcz_A 337 GVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIGMACGA 380 (413)
T ss_dssp STHHHHHHHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCCEEEecCCCCCCHHHHHHHHHHHhcCCC
Confidence 99999999999999999999988 78999999999999999874
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-46 Score=426.00 Aligned_cols=299 Identities=18% Similarity=0.216 Sum_probs=236.7
Q ss_pred CCccccccccCcceeeeEEEEEEEECCCCEEEEeecCc---------Cc-CcccHHHHHHHHH-HHHhHhccCccccccc
Q 041113 510 PPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL---------EI-HKENLLDAEEQLR-FLLHFMTGAKISYFLP 578 (983)
Q Consensus 510 p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~---------~~-~~~~~~~~~~~l~-~~~~~l~g~~~~~~~~ 578 (983)
|++.+++.. .+.++.++|+|+|++|++||||+.+. +. +. +.+...++ .+.|.|+|+++.+++.
T Consensus 38 p~~~~f~~~---~~~~~~v~V~v~td~G~~G~GE~~~~~~sGa~~r~~~~~~---~~~~~~i~~~l~p~LiG~d~~~~~~ 111 (413)
T 1kko_A 38 PVTPGFTSV---RQAGECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLA---EHFIPFLNDHIKPLLEGRDVDAFLP 111 (413)
T ss_dssp CCSTTCSSS---EEEEEEEEEEEEETTSCEEEEEECCCTTTTSTTCCCCCCH---HHHHHHHHHHTHHHHTTCBCSCSHH
T ss_pred CccCCcceE---EEecceEEEEEEECCCCEEEEEecccccccccccCccccH---HHHHHHHHHHHHHHHcCCChHhHHH
Confidence 555555421 24489999999999999999999875 21 22 23344454 4889999999887655
Q ss_pred ccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecC--CCCH
Q 041113 579 LLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDS--NKSP 656 (983)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~--~~~~ 656 (983)
++..+ ..... ......++|++|||+||||+.||.+|+|||+||||... ..+ .+++||+|++... ..++
T Consensus 112 i~~~l-----~~~~~-~~~~~~~~A~~aid~AlwDl~ak~~g~Pl~~lLGg~~~--~~l--~~~~vp~y~~~g~~~~~~~ 181 (413)
T 1kko_A 112 NARFF-----DKLRI-DGNLLHTAVRYGLSQALLDATALASGRLKTEVVCDEWQ--LPC--VPEAIPLFGQSGDDRYIAV 181 (413)
T ss_dssp HHHHH-----HHCEE-TTEECCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTT--CCC--CCCCCCEECCCTTCTTHHH
T ss_pred HHHHH-----Hhhhc-ccCccHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCccc--ccc--ccCCeEEEEecCccccCCH
Confidence 54321 11110 01113578999999999999999999999999998520 001 1357999876311 1367
Q ss_pred HHHHHHHHHhhhcC-CCEEEEeccCCCChHH-------HHHHHHHHHHHcCCCcEEEEEcCC------CCCHHHHHHHHh
Q 041113 657 VEVASIATTLVEEG-FTAIKLKVARRADPIK-------DAEVIQEVRKKVGHRIELRVDANR------NWTYQEALEFGF 722 (983)
Q Consensus 657 ~~~~~~~~~~~~~G-~~~~KiKig~~~~~~~-------d~~~v~~vr~~~g~~~~l~vDaN~------~~~~~~a~~~~~ 722 (983)
+++++++.+++++| |++||+|+|. +.++ |+++|++||+++|+++.|++|+|+ +||+++|+++++
T Consensus 182 ~~~~~~~~~~~~~G~~~~iK~KvG~--~~~~~~~~l~~d~~~v~aiR~~~G~~~~L~vDan~~~~~~~~~~~~~A~~~~~ 259 (413)
T 1kko_A 182 DKMILKGVDVLPHALINNVEEKLGF--KGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIA 259 (413)
T ss_dssp HHHHHTTCSEEEETTCCCCCCCCCT--TSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccEEEEecCC--ChhhHHHHHHHHHHHHHHHHHhhCCCCeEEEECCCccccccCCCHHHHHHHHH
Confidence 88888888888899 9999999996 4444 459999999999999999999999 999999999999
Q ss_pred hcccCCCc---eeecCCC------ChHHHHHHHhh-----cCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCC
Q 041113 723 LIKDCDLQ---YIEEPVQ------NEEDIIKYCEE-----SGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSV 787 (983)
Q Consensus 723 ~l~~~~i~---~iEeP~~------~~~~~~~l~~~-----~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~ 787 (983)
.|+++++. |||||++ |++++++|+++ +++||++||++++..+ +..+++.+ +|++|+|+++
T Consensus 260 ~L~~~~~~~~l~iEqP~~~~~~~~d~~~~~~l~~~l~~~g~~ipIa~dE~~~~~~~-----~~~~i~~~a~d~i~ik~~~ 334 (413)
T 1kko_A 260 SLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTYQD-----IVDFTDAGSCHMVQIKTPD 334 (413)
T ss_dssp HTGGGGTTSCEEEECCCCCSSHHHHHHHHHHHHHHHHHHTCCCEEEECTTCCSHHH-----HHHHHHTTCCSEEEECGGG
T ss_pred HHHhccCCcceEEECCcCCCCCcccHHHHHHHHHhcccCCCCCcEEcCCCCCCHHH-----HHHHHHhCCCCEEEeCccc
Confidence 99995433 9999998 67788999988 8999999999998753 66666544 7999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhch
Q 041113 788 IGGFENAGLIARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 788 ~GGl~~~~~~~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~ 831 (983)
+|||+++++++++|+++|+++++||+. ||++++++++||+++++
T Consensus 335 ~GGitea~~i~~~A~~~gi~~~~~~~~~et~i~~aa~~hlaaa~~ 379 (413)
T 1kko_A 335 LGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVHVALAAR 379 (413)
T ss_dssp GSSTHHHHHHHHHHHHHTCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHcCCeEEecCCCCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999999999996 99999999999999864
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=383.98 Aligned_cols=289 Identities=27% Similarity=0.405 Sum_probs=223.2
Q ss_pred EEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCccccc
Q 041113 497 RMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYF 576 (983)
Q Consensus 497 ~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~~~~~ 576 (983)
+|+++.+++||+.||.. . ..++.++|+ |.+||||+.|++.+.+. +.
T Consensus 2 ~i~~~~~~~Pl~~pf~~-~-------~~r~~~lV~-----G~~G~GE~~p~~~~~~~-----~~---------------- 47 (327)
T 2opj_A 2 SLTGRAFAIPLRTRFRG-I-------TVREGMLVR-----GAAGWGEFSPFAEYGPR-----EC---------------- 47 (327)
T ss_dssp CCSEEEEEEEEEEEETT-E-------EEEEEEEEE-----CSSCEEEECCCTTCCHH-----HH----------------
T ss_pred EEEEEEEEEeeccCcee-e-------eEEEEEEEE-----cCEEEEEecCCCCCCHH-----HH----------------
Confidence 56788899999988861 1 348888884 99999999987643210 00
Q ss_pred ccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCCCH
Q 041113 577 LPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSP 656 (983)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~~ 656 (983)
...+++|||||||| +| |+. +++|++|+++. ..++
T Consensus 48 -----------------------~~~~~aaid~Al~~-------~P-----g~~----------r~~v~~~~ti~-~~~~ 81 (327)
T 2opj_A 48 -----------------------ARWWAACYEAAELG-------WP-----APV----------RDTVPVNATVP-AVGP 81 (327)
T ss_dssp -----------------------HHHHHHHHHHHHTC-------CC-----CCS----------CSEEEBCEEEC-SCCH
T ss_pred -----------------------HHHHHHHHHHHHhC-------CC-----cCC----------CCeeEEeEEeC-CCCH
Confidence 02357999999974 46 333 47899998874 4678
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecC
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEP 735 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP 735 (983)
+++.+.++ ++||++||+|+|.+ .++++|+++|++||+++|+++.||||+|++||+++|+++++.|+++++.|||||
T Consensus 82 e~~~~~~~---~~G~~~~KiKvg~~g~~~~~d~~~v~avR~~~G~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~iEqP 158 (327)
T 2opj_A 82 EEAARIVA---SSGCTTAKVKVAERGQSEANDVARVEAVRDALGPRGRVRIDVNGAWDVDTAVRMIRLLDRFELEYVEQP 158 (327)
T ss_dssp HHHHHHHH---HHCCSEEEEECCC------CHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEECC
T ss_pred HHHHHHHH---HCCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCcEEeCC
Confidence 77655443 58999999999852 146889999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC
Q 041113 736 VQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF 814 (983)
Q Consensus 736 ~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~ 814 (983)
+++++++++|++++++|||+||++++..+ +..+++.+ +|++|+|++++||+++++++++ .+|+++++|+++
T Consensus 159 ~~~~~~~~~l~~~~~iPIa~dEs~~~~~~-----~~~~i~~~a~d~i~ik~~~~GGit~~~~ia~---~~gi~~~~~~~~ 230 (327)
T 2opj_A 159 CATVDELAEVRRRVSVPIAADESIRRAED-----PLRVRDAEAADVVVLKVQPLGGVRAALRLAE---ECGLPVVVSSAV 230 (327)
T ss_dssp SSSHHHHHHHHHHCSSCEEC----------------CTTTTTCCSBEEECHHHHTSHHHHHHHHH---HTCSCEEEBCCS
T ss_pred CCCHHHHHHHHhhCCCCEEcCCCCCCHHH-----HHHHHHhCCCCEEEeCccccCCHHHHHHHHH---HcCCcEEEcCCC
Confidence 99889999999999999999999999865 55666554 7999999999999999998764 569999999999
Q ss_pred chHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeEEecchhhhh
Q 041113 815 ESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEASVAKATHIL 890 (983)
Q Consensus 815 es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~ 890 (983)
||+||+++++|++++++|. ...+++++..++.+|++.+|+.+++ +| ||++| ++.+
T Consensus 231 es~ig~aa~~hlaaa~~~~--------------~~~~~l~~~~~~~~d~~~~~~~~~~G~l~vp-----gve~d--~~~l 289 (327)
T 2opj_A 231 ETSVGLAAGVALAAALPEL--------------PYACGLATLRLLHADVCDDPLLPVHGVLPVR-----RVDVS--EQRL 289 (327)
T ss_dssp CCHHHHHHHHHHHHHSSCC--------------SSCBBCCGGGGBSCCSBSSCCCCBTTEEECC-----CCCBC--HHHH
T ss_pred cCHHHHHHHHHHHHhCCCc--------------ccccccCchhhhhhhcccCCCeeECCEEECC-----CcccC--HHHH
Confidence 9999999999999999853 1223444556778898878888763 55 68999 8888
Q ss_pred hhccccc
Q 041113 891 QNLQINN 897 (983)
Q Consensus 891 ~~~~~~~ 897 (983)
+++....
T Consensus 290 ~~~~~~~ 296 (327)
T 2opj_A 290 AEVEIDP 296 (327)
T ss_dssp HHTEECC
T ss_pred HhccCCc
Confidence 8888653
|
| >2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=398.79 Aligned_cols=306 Identities=17% Similarity=0.132 Sum_probs=241.7
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC----------------cCcccHHH
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE----------------IHKENLLD 556 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~----------------~~~~~~~~ 556 (983)
|||++|+++.+..+ . + ++.++|+|+|++|++|||++.... +.+++...
T Consensus 9 MkI~~i~~~~v~~s--------~-----g---~~~v~V~v~td~G~~G~G~~~~~~~tg~~ea~~~~d~~~~~~g~~~~~ 72 (427)
T 2pa6_A 9 FEIKDIVAREVIDS--------R-----G---NPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEKRFGGKGVLM 72 (427)
T ss_dssp GBEEEEEEEEEECT--------T-----S---CEEEEEEEEETTCCEEEEECCCCCSSCSSSCCCCCCCSSGGGGTCCHH
T ss_pred CEEEEEEEEEEEcC--------C-----C---CceEEEEEEECCCCeeeEecccccccCcceeEeecCCccccccccHHH
Confidence 79999999988732 1 1 568999999999999999653211 22334445
Q ss_pred HHHHHH-HHHhHhccCcccccccccccCchhhhhhhcCCC-CCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccc
Q 041113 557 AEEQLR-FLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIP-ACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEID 634 (983)
Q Consensus 557 ~~~~l~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~ 634 (983)
+...++ .+.|.|+|+++.+.+.++.. +....+.. ......+|++|||+||||+.||.+|+|||+||||..
T Consensus 73 ~~~~i~~~l~p~LiG~d~~~~~~i~~~-----l~~~~~~~~~~~~~~~A~~avd~AlwDl~ak~~g~Pl~~lLGg~~--- 144 (427)
T 2pa6_A 73 AVENVNSIIRPEILGYDARMQREIDTI-----MIELDGTPNKSRLGANAILAVSLAVAKAAAATAKIPLYKYLGGFN--- 144 (427)
T ss_dssp HHHHHHHTHHHHHTTCBTTCHHHHHHH-----HHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHCSC---
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHH-----HHHhhCCCccccchHHHHHHHHHHHHHHHHHHhCCcHHHHhcCcc---
Confidence 556666 58999999998876554432 11111111 122346899999999999999999999999999975
Q ss_pred cccccccceeEEEEe--ecCC---------------CCHHHHHHHHHHhhhcCCCEEEE----eccCC-----------C
Q 041113 635 EEISKRSTSIKICAL--IDSN---------------KSPVEVASIATTLVEEGFTAIKL----KVARR-----------A 682 (983)
Q Consensus 635 ~~~~~~~~~i~~~~~--~~~~---------------~~~~~~~~~~~~~~~~G~~~~Ki----Kig~~-----------~ 682 (983)
++++|+|.+ +.+. ...+++.+++.+++++||+++|+ |+|.. .
T Consensus 145 ------~~~vp~~~~~~~~gg~~~~~~l~~~~~~~~p~~~~~~~~a~~~~~~g~~~lK~~l~~K~G~~~~~vg~~gg~~~ 218 (427)
T 2pa6_A 145 ------SYVMPVPMMNVINGGKHAGNDLDLQEFMIMPVGATSISEAVRMGSEVYHVLKNVILEKYGKNAVNVGDEGGFAP 218 (427)
T ss_dssp ------CCEECEECEEEEECSTTTSSSCSSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCTTSCCBCTTSCBCC
T ss_pred ------ccccccchhccccccccccCCcCHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcCCcCC
Confidence 356777642 2111 12367788899999999999998 75521 1
Q ss_pred ChHHHHHHHHHHHHHc---CC--CcEEEEEc-------CCCC-------CHHHHHHHHh-hcccCCCceeecCCC--ChH
Q 041113 683 DPIKDAEVIQEVRKKV---GH--RIELRVDA-------NRNW-------TYQEALEFGF-LIKDCDLQYIEEPVQ--NEE 740 (983)
Q Consensus 683 ~~~~d~~~v~~vr~~~---g~--~~~l~vDa-------N~~~-------~~~~a~~~~~-~l~~~~i~~iEeP~~--~~~ 740 (983)
+++.|+++|++||+++ |+ ++.|++|+ |++| |.++|++++. .+++|++.|||||++ |++
T Consensus 219 ~~~~d~~~v~~vreav~~~G~~~~~~L~vDa~as~~~~n~~~~~~n~~~~~~~ai~~~~~~l~~~~i~~iEeP~~~~d~~ 298 (427)
T 2pa6_A 219 PLKTSREALDLLTESVKKAGYEDEVVFALDAAASEFYKDGYYYVEGKKLTREELLDYYKALVDEYPIVSIEDPFHEEDFE 298 (427)
T ss_dssp SCCSHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEEEETTEEECHHHHHHHHHHHHHHSCEEEEECCSCTTCHH
T ss_pred CccchHHHHHHHHHHHHHhCCCCCcEEEEEcchhccccCCceeecCCCCCHHHHHHHHHHHHhhCCCcEEEcCCChhhHH
Confidence 3578999999999999 98 99999999 6665 8999999965 899999999999998 889
Q ss_pred HHHHHHhhcCCcEEeCCCccC-cCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC-chH
Q 041113 741 DIIKYCEESGLPVALDETIDK-FQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF-ESG 817 (983)
Q Consensus 741 ~~~~l~~~~~ipIa~dEs~~~-~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~-es~ 817 (983)
++++|++++++||++||++.+ .. .+..+++. .+|++|+|++++|||+++++++++|+++|++++++|++ ||+
T Consensus 299 ~~~~l~~~~~ipIa~dE~~~~~~~-----~~~~~i~~~a~d~i~ik~~~~GGitea~~ia~lA~~~g~~~~~~h~~~es~ 373 (427)
T 2pa6_A 299 GFAMITKELDIQIVGDDLFVTNVE-----RLRKGIEMKAANALLLKVNQIGTLSEAVDAAQLAFRNGYGVVVSHRSGETE 373 (427)
T ss_dssp HHHHHHHHSSSEEEESTTTTTCHH-----HHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHTTTCEEEEECCSSCCS
T ss_pred HHHHHHhhCCCeEEeCccccCCHH-----HHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCCh
Confidence 999999999999999999554 54 36665554 47999999999999999999999999999999998887 999
Q ss_pred HHHHHHHHHHhhchhh
Q 041113 818 LGLSAYIIFSSYLELQ 833 (983)
Q Consensus 818 ig~~a~~~laa~~~~~ 833 (983)
++.++++|++++.+|+
T Consensus 374 i~~aa~l~~a~~~~~~ 389 (427)
T 2pa6_A 374 DTTIADLSVALNSGQI 389 (427)
T ss_dssp CCHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHhCCCcc
Confidence 9999999999998864
|
| >2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=398.86 Aligned_cols=304 Identities=17% Similarity=0.165 Sum_probs=243.7
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCc------------------CcccH
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEI------------------HKENL 554 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~------------------~~~~~ 554 (983)
|||++|+.+.+. .+. .++.++|+|+|++|++| ||+.|.+. .++++
T Consensus 1 ~~I~~v~~~~v~--------~sr--------g~~~v~V~v~td~G~~G-ge~~p~~~~~G~~ea~e~rd~~~~~y~g~~~ 63 (431)
T 2fym_A 1 SKIVKIIGREII--------DSR--------GNPTVEAEVHLEGGFVG-MAAAPSGASTGSREALELRDGDKSRFLGKGV 63 (431)
T ss_dssp CBEEEEEEEEEE--------CTT--------SCEEEEEEEEETTSCEE-EEECCCCCSSCSSSCCCCCCCCTTSGGGTCC
T ss_pred CeeEEEEEEEEE--------cCC--------CCeeEEEEEEECCCCcc-ceecCcccccCcccceeccCCcccccccccH
Confidence 689999998873 111 15789999999999999 99987641 22224
Q ss_pred HHHHHHHHH-HHhHhccCcccccccccccCchhhhhhhcCCCC-CcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCc
Q 041113 555 LDAEEQLRF-LLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPA-CEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTE 632 (983)
Q Consensus 555 ~~~~~~l~~-~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~ 632 (983)
..+...++. +.|.|+|+++.+.+.++.. +....+... .....+|++|||+||||+.||.+|+|||+||||..
T Consensus 64 ~~~~~~i~~~l~p~LiG~d~~~~~~i~~~-----l~~~~g~~~~~~~g~~A~~avd~AlwD~~ak~~g~Pl~~lLGG~~- 137 (431)
T 2fym_A 64 TKAVAAVNGPIAQALIGKDAKDQAGIDKI-----MIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELN- 137 (431)
T ss_dssp HHHHHHHHTHHHHHHTTSBTTCHHHHHHH-----HHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHH-----HHHhhCCCcccchhHHHHHHHHHHHHHHHHHHhCCcHHHHhcCcc-
Confidence 455555654 8999999998876554431 111112111 22345899999999999999999999999999864
Q ss_pred cccccccccce----eEE--EEeecC---------CCC----H--HHHHHHHHHhhhcCCCEEE---------EeccCC-
Q 041113 633 IDEEISKRSTS----IKI--CALIDS---------NKS----P--VEVASIATTLVEEGFTAIK---------LKVARR- 681 (983)
Q Consensus 633 ~~~~~~~~~~~----i~~--~~~~~~---------~~~----~--~~~~~~~~~~~~~G~~~~K---------iKig~~- 681 (983)
+++ +|+ |..+.+ ..+ | +++.+++.++.++||+++| +|+|..
T Consensus 138 --------~~~~~~~~pv~~~~~~~gg~~~~~~l~~~~~mi~p~~~~~~~~a~~~~~~g~~~lK~~l~~~g~~~kvG~~g 209 (431)
T 2fym_A 138 --------GTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEG 209 (431)
T ss_dssp --------TCTTCCCCCEECEEEEECGGGSSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTS
T ss_pred --------cccccccccceeEeeccCccccccccCcchhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCcccccCccc
Confidence 122 444 332210 112 4 6677888899999999999 999852
Q ss_pred ---CChHHHHHHHHHHHHHc-------CCCcEEEEEc----------------C-CCCCHHHHHHHHhhccc-CCCceee
Q 041113 682 ---ADPIKDAEVIQEVRKKV-------GHRIELRVDA----------------N-RNWTYQEALEFGFLIKD-CDLQYIE 733 (983)
Q Consensus 682 ---~~~~~d~~~v~~vr~~~-------g~~~~l~vDa----------------N-~~~~~~~a~~~~~~l~~-~~i~~iE 733 (983)
.+++.|+++|++||+++ |+++.|++|+ | ++||.++|+++++.|++ |++.|||
T Consensus 210 g~~~~~~~d~~~l~~vreai~~~g~~~G~dv~l~vDaaas~~~~~~~Y~~~~~n~~~~t~~~ai~~~~~L~~~~~i~~iE 289 (431)
T 2fym_A 210 GYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIE 289 (431)
T ss_dssp CBCCCCSSHHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGGEETTEEEEGGGTTEEECHHHHHHHHHHHHHHSCEEEEE
T ss_pred CCCCCccchHHHHHHHHHHHHHhccCCCCccEEEEeechhhccccCceeeccCCCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 15678999999999999 9999999999 9 99999999999999988 9999999
Q ss_pred cCCC--ChHHHHHHHhhc--CCcEEeCC-CccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCc
Q 041113 734 EPVQ--NEEDIIKYCEES--GLPVALDE-TIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKM 807 (983)
Q Consensus 734 eP~~--~~~~~~~l~~~~--~ipIa~dE-s~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~ 807 (983)
||++ |++++++|++++ ++||++|| ++++.. .++.+++.+ +|++++|++++||||++++++++|+++|++
T Consensus 290 ePl~~~d~~~~~~l~~~~~~~ipIa~dEl~~~~~~-----~~~~~i~~~a~d~i~ik~~~~GGite~~~i~~~A~~~g~~ 364 (431)
T 2fym_A 290 DGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTK-----ILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYT 364 (431)
T ss_dssp SCSCTTCHHHHHHHHHHHTTTSEEEESTTTTTCHH-----HHHHHHHTTCCSEEEECGGGTCSHHHHHHHHHHHHHTTCE
T ss_pred CCCCcccHHHHHHHHHHhCCCCeEEeCCcccCCHH-----HHHHHHHhCCCCEEEECccccCCHHHHHHHHHHHHHCCCe
Confidence 9998 789999999998 89999999 998875 366666544 799999999999999999999999999999
Q ss_pred EEeCCCC-chHHHHHHHHHHHhhchh
Q 041113 808 AVVSAAF-ESGLGLSAYIIFSSYLEL 832 (983)
Q Consensus 808 ~~~~~~~-es~ig~~a~~~laa~~~~ 832 (983)
++++|++ ||+++.++++|+++..++
T Consensus 365 ~~~~h~~get~~~~~a~la~a~~~~~ 390 (431)
T 2fym_A 365 AVISHRSGETEDATIADLAVGTAAGQ 390 (431)
T ss_dssp EEEECCSSCCSCCHHHHHHHHTTCEE
T ss_pred EEEeCCCCCchHHHHHHHHHhcCCCc
Confidence 9999999 999999999999988774
|
| >1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=382.50 Aligned_cols=303 Identities=16% Similarity=0.121 Sum_probs=240.3
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCc------------------CcccHH
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEI------------------HKENLL 555 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~------------------~~~~~~ 555 (983)
.|.+|..+.+- .+.+ ++.++|+|+|++|++| ||+.|.+. .++++.
T Consensus 13 ~i~~~~~r~i~--------dsrg--------~~~v~V~V~td~G~~G-ge~~p~~~~tG~~ea~elrd~~~~~~~g~~v~ 75 (444)
T 1w6t_A 13 IITDVYAREVL--------DSRG--------NPTLEVEVYTESGAFG-RGMVPSGASTGEHEAVELRDGDKSRYGGLGTQ 75 (444)
T ss_dssp BEEEEEEEEEE--------CTTS--------CEEEEEEEEETTCCEE-EEECCCC---CCSSCCCCCCCCTTSGGGTCCH
T ss_pred hcceeEEEEEE--------cCCC--------CceEEEEEEECCCCEe-eEecccccccccceeeeeccCcccccccccHH
Confidence 68999988762 2232 6889999999999999 99987542 122344
Q ss_pred HHHHHHH-HHHhHhccCcccccccccccCchhhhhhhcCCC-CCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCcc
Q 041113 556 DAEEQLR-FLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIP-ACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEI 633 (983)
Q Consensus 556 ~~~~~l~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~ 633 (983)
.+...++ .+.|.|+|+++.+...++..+ ....+.. ......+|++||||||||+.||.+|+|||+||||..
T Consensus 76 ~a~~~i~~~l~p~LiG~d~~~~~~i~~~l-----~~~~g~~~~~~~g~~A~~avd~AlwD~~ak~~g~Pl~~lLGG~~-- 148 (444)
T 1w6t_A 76 KAVDNVNNIIAEAIIGYDVRDQQAIDRAM-----IALDGTPNKGKLGANAILGVSIAVARAAADYLEIPLYSYLGGFN-- 148 (444)
T ss_dssp HHHHHHHHTHHHHHTTSBTTCHHHHHHHH-----HHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHCTT--
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHH-----HHhhCCCccccchhHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC--
Confidence 4455565 589999999988765544321 1111111 112346899999999999999999999999999975
Q ss_pred ccccccccceeEEEEe--ecCC---------------CCHHHHHHHHHHhhhcCCCEEE---------EeccCC----CC
Q 041113 634 DEEISKRSTSIKICAL--IDSN---------------KSPVEVASIATTLVEEGFTAIK---------LKVARR----AD 683 (983)
Q Consensus 634 ~~~~~~~~~~i~~~~~--~~~~---------------~~~~~~~~~~~~~~~~G~~~~K---------iKig~~----~~ 683 (983)
+++||+|.+ +.+. ...++..+++.++.++||+++| +|+|.. .+
T Consensus 149 -------~~~vp~~~~~~~~gg~~a~~~l~~qe~mi~p~~~~~~~~a~~~~~~g~~~lK~~lk~kg~~~kvG~~gg~~~~ 221 (444)
T 1w6t_A 149 -------TKVLPTPMMNIINGGSHSDAPIAFQEFMILPVGAPTFKEALRYGAEIFHALKKILKSRGLETAVGDEGGFAPR 221 (444)
T ss_dssp -------CCEECEECEEEEECGGGCSSSCCCSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCC
T ss_pred -------cccccccccceeccccccccccchhHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCc
Confidence 466887753 1110 0124556778888889999999 788852 15
Q ss_pred hHHHHHHHHHHHHHc-------CCCcEEEEEc---------CCC-------------CCHHHHHHHHhhcc-cCCCceee
Q 041113 684 PIKDAEVIQEVRKKV-------GHRIELRVDA---------NRN-------------WTYQEALEFGFLIK-DCDLQYIE 733 (983)
Q Consensus 684 ~~~d~~~v~~vr~~~-------g~~~~l~vDa---------N~~-------------~~~~~a~~~~~~l~-~~~i~~iE 733 (983)
++.|+++|++||+++ |+++.|++|+ |++ ||+++|+++++.|. +|++.|||
T Consensus 222 ~~~d~~~l~avreav~~agy~pG~dv~L~vDaaas~~~~~~n~~y~~~~n~~~~~~~~t~~eai~~~~~l~~~~~i~~iE 301 (444)
T 1w6t_A 222 FEGTEDGVETILAAIEAAGYVPGKDVFLGFDCASSEFYDKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYPIITIE 301 (444)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGGBC--CCCEETHHHHCTTCCEECHHHHHHHHHHHHHHSCEEEEE
T ss_pred hHhHHHHHHHHHHHHHHhccCCCCCcEEEEEccchhcccccCCceeeccccCcccCCCCHHHHHHHHHHHHHhCCcEEEE
Confidence 678999999999999 9999999999 888 88999999999986 59999999
Q ss_pred cCCC--ChHHHHHHHhhc--CCcEEeCCC-ccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCc
Q 041113 734 EPVQ--NEEDIIKYCEES--GLPVALDET-IDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKM 807 (983)
Q Consensus 734 eP~~--~~~~~~~l~~~~--~ipIa~dEs-~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~ 807 (983)
||++ |++++++|++++ ++||++||+ +++.. .+..+++. .+|++|+|++++||||++++++++|+++|++
T Consensus 302 ePl~~~d~~~~~~l~~~~~~~ipIa~dE~~~~~~~-----~~~~~i~~~a~d~i~ik~~~~GGitea~~ia~lA~~~g~~ 376 (444)
T 1w6t_A 302 DGMDENDWDGWKALTERLGKKVQLVGDDFFVTNTD-----YLARGIQEGAANSILIKVNQIGTLTETFEAIEMAKEAGYT 376 (444)
T ss_dssp SCSCTTCHHHHHHHHHHHTTTSEEEESTTTTTCHH-----HHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCE
T ss_pred CCCChhhHHHHHHHHHhhCCCCeEEeCCcccCCHH-----HHHHHHHcCCCCEEEEcccccCCHHHHHHHHHHHHHCCCe
Confidence 9998 789999999998 899999998 88765 36665654 4799999999999999999999999999999
Q ss_pred EEeCCCC-chHHHHHHHHHHHhhchh
Q 041113 808 AVVSAAF-ESGLGLSAYIIFSSYLEL 832 (983)
Q Consensus 808 ~~~~~~~-es~ig~~a~~~laa~~~~ 832 (983)
++++|++ ||+++.++++|+++..++
T Consensus 377 v~~~h~~get~i~~~a~lava~~~~~ 402 (444)
T 1w6t_A 377 AVVSHRSGETEDSTIADIAVATNAGQ 402 (444)
T ss_dssp EEEECCSSCCSCCHHHHHHHHTTCCE
T ss_pred EEecCCCCCchHHHHHHHHHhcCCCc
Confidence 9998988 999999999999988774
|
| >2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A 2pu0_A 2pu1_A* 1oep_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-40 Score=373.84 Aligned_cols=307 Identities=15% Similarity=0.094 Sum_probs=233.9
Q ss_pred cceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-----------------cCccc
Q 041113 491 SICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-----------------IHKEN 553 (983)
Q Consensus 491 ~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-----------------~~~~~ 553 (983)
++|||++|+++.+..|+. ++.++|+|+|++| +||||+.+.. +.++.
T Consensus 2 ~~m~I~~i~~~~v~~~~~----------------~p~v~V~v~td~G-~G~ge~~sgastg~~ea~elrd~~~~~~~g~~ 64 (432)
T 2ptz_A 2 SHMTIQKVHGREVLDSRG----------------NPTVEVEVTTEKG-VFRSAVPSGASTGVYEACELRDGDKKRYVGKG 64 (432)
T ss_dssp CTTSCCEEEEEEEECTTS----------------CEEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTTGGGTC
T ss_pred CCCEEEEEEEEEEecCCC----------------CcEEEEEEEeCCc-EEEEEEecccccCcceeeeeccCccccccccc
Confidence 348999999999874431 4578999999999 9999985421 22234
Q ss_pred HHHHHHHHH-HHHhHhccCcccccccccccCchhhhhhhcCCC-CCcchhhHHHHHHHHHHHHHHHHcCCChhhhcC---
Q 041113 554 LLDAEEQLR-FLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIP-ACEIFPSVRCGLEMAILNAIAVKHGSSFLNILY--- 628 (983)
Q Consensus 554 ~~~~~~~l~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLG--- 628 (983)
+..+...++ .+.|.|+|+++.+...++.. +....+.. ......+|++|||+||||+.||.+|+|||+|||
T Consensus 65 v~~av~~v~~~iap~LiG~d~~~~~~i~~~-----m~~~~~~~~~~~~~~~Ai~aVd~AlwD~~ak~~g~Ply~lLG~~~ 139 (432)
T 2ptz_A 65 CLQAVKNVNEVIGPALIGRDELKQEELDTL-----MLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLYRYLASLA 139 (432)
T ss_dssp CHHHHHHHHHTHHHHHTTCCTTCHHHHHHH-----HHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCChhhHHHHHHH-----HHHhhCCCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhcccc
Confidence 444444454 48999999999876554432 11111111 123446899999999999999999999999999
Q ss_pred CCCccccccccccceeEEEEeecCC------CCHHHH---------HHHHHHhhhcCCCEEEEec----cCC--------
Q 041113 629 PLTEIDEEISKRSTSIKICALIDSN------KSPVEV---------ASIATTLVEEGFTAIKLKV----ARR-------- 681 (983)
Q Consensus 629 g~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~---------~~~~~~~~~~G~~~~KiKi----g~~-------- 681 (983)
|..+ .+.++|+|.++.++ .+++++ .+++.++.++||+++|+|+ |..
T Consensus 140 G~~~-------~~~pvp~~~~i~gg~~a~~~~~~qe~mi~p~~~~~~~ea~~~~~eg~~~lK~~l~~k~G~~at~vgdeg 212 (432)
T 2ptz_A 140 GTKE-------LRLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKKYGQDAVNVGDEG 212 (432)
T ss_dssp TCSC-------CEECEEEEEEEECSTTSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGCCBCTTS
T ss_pred CCCC-------cCCceeEEEEecCcccccCCCCHHHhcccCcccCCHHHHHHHHHHHHHHHHHHhHhhcCCCccccCCcc
Confidence 8641 12567777765322 123344 6788889999999999865 531
Q ss_pred ------CChHHHHHH-HHHHHHHcCC--CcEEEEEcCCCC---------------------CHHHHHHHH-hhcccCCCc
Q 041113 682 ------ADPIKDAEV-IQEVRKKVGH--RIELRVDANRNW---------------------TYQEALEFG-FLIKDCDLQ 730 (983)
Q Consensus 682 ------~~~~~d~~~-v~~vr~~~g~--~~~l~vDaN~~~---------------------~~~~a~~~~-~~l~~~~i~ 730 (983)
.+.++|+++ ++++| ++|+ ++.|++|+|++| +..+++++. +.+++|++.
T Consensus 213 g~~p~~~~~~~~l~~i~~Air-~~G~~g~v~l~vDan~~~~~~~~~~~y~~~~~~~~~~~~~a~~~~~~~~~~l~~y~i~ 291 (432)
T 2ptz_A 213 GFAPPIKDINEPLPILMEAIE-EAGHRGKFAICMDCAASETYDEKKQQYNLTFKSPEPTWVTAEQLRETYCKWAHDYPIV 291 (432)
T ss_dssp SBCCSCCCTTTHHHHHHHHHH-HTTCTTSCEEEEECCGGGGEETTTTEEETTTTSSSCCEECHHHHHHHHHHHHHHSCEE
T ss_pred CcCCCcccHHHHHHHHHHHHH-HhCCcCCcEEEEECcccccccccCceeEeeccccccCCCCHHHHHHHHHHHHHhCCce
Confidence 025789996 88888 7898 999999999885 445555444 678999999
Q ss_pred eeecCCC--ChHHHHHHHhhc--CCcEEeCCC-ccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHc
Q 041113 731 YIEEPVQ--NEEDIIKYCEES--GLPVALDET-IDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRH 804 (983)
Q Consensus 731 ~iEeP~~--~~~~~~~l~~~~--~ipIa~dEs-~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~ 804 (983)
|||||++ |++++++|++++ ++||++||. +++.. .++.+++.+ +|++++|++++||||++++++++|+++
T Consensus 292 ~iEdPl~~~D~~g~~~l~~~~g~~ipI~gDe~~v~~~~-----~~~~~i~~~a~d~i~ik~~~~GGitea~~i~~lA~~~ 366 (432)
T 2ptz_A 292 SIEDPYDQDDFAGFAGITEALKGKTQIVGDDLTVTNTE-----RIKMAIEKKACNSLLLKINQIGTISEAIASSKLCMEN 366 (432)
T ss_dssp EEECCSCTTCHHHHHHHHHHTTTTSEEEESTTTTTCHH-----HHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHT
T ss_pred EEECCCCcchHHHHHHHHHhcCCCCeEEecCcccCCHH-----HHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHc
Confidence 9999998 899999999998 899999996 56654 466666554 799999999999999999999999999
Q ss_pred CCcEEeCCCC-chHHHHHHHHHHHhhchh
Q 041113 805 GKMAVVSAAF-ESGLGLSAYIIFSSYLEL 832 (983)
Q Consensus 805 gi~~~~~~~~-es~ig~~a~~~laa~~~~ 832 (983)
|++++++|+. ||.++..+.+|++...++
T Consensus 367 g~~v~~~h~~get~~~~~a~lava~~~~~ 395 (432)
T 2ptz_A 367 GWSVMVSHRSGETEDTYIADLVVALGSGQ 395 (432)
T ss_dssp TCEEEEECCSBCCSCCHHHHHHHHHTCSE
T ss_pred CCeEEecCCCCccHHHHHHHHHHHhCCCC
Confidence 9999998876 889999999999987763
|
| >3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A {Anaerostipes caccae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=358.34 Aligned_cols=304 Identities=17% Similarity=0.131 Sum_probs=230.7
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-----------------cCcccHH
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-----------------IHKENLL 555 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-----------------~~~~~~~ 555 (983)
|+|++|..+.+- .+. .++++.|+|+|++|.+|+|++.... |.++.+.
T Consensus 26 m~I~~i~~r~i~--------dsr--------g~ptvev~v~t~~G~~G~~~~psgastG~~ea~elrd~~~~~y~g~~v~ 89 (449)
T 3uj2_A 26 LEIEKVIGREII--------DSR--------GNPTVEAEVYLAGGVTGRGTAPSGASTGEFEALELRDGDKGRFGGKGVT 89 (449)
T ss_dssp TBEEEEEEEEEE--------CTT--------SCEEEEEEEEETTSCEEEEECCBC---CCSSCCCCCCCCTTSGGGTCCH
T ss_pred eEEEEEEEEEEE--------CCC--------CCCeEEEEEEECCCCEEEEeccCCCcCcceeEEEeccCCcccccchhHH
Confidence 799999988762 222 1688999999999999999764321 2233344
Q ss_pred HHHHHH-HHHHhHhccCcccccccccccCchhhhhhhcCCC-CCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCcc
Q 041113 556 DAEEQL-RFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIP-ACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEI 633 (983)
Q Consensus 556 ~~~~~l-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~ 633 (983)
...+.+ +.+.|.|+|+++.+.+.++..+ ....+.. ......+|++|||+||||+.||.+|+|||+||||..
T Consensus 90 ~av~~v~~~iap~LiG~d~~~~e~i~~~m-----~~~dgt~~k~~lg~nAi~aVd~Alwda~ak~~g~PLy~lLGG~~-- 162 (449)
T 3uj2_A 90 KAVQNINTEISEILSGMDASDIYAVDRAM-----IDADGTKDKSKFGANAVLAVSIACAKAAAAALGVPLYRFLGGLN-- 162 (449)
T ss_dssp HHHHHHHTHHHHHHTTSBTTCHHHHHHHH-----HHHHCSSSCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHGGG--
T ss_pred HHHHHHHHHHHHHHccCCccCHHHHHHHH-----HHhcCcCCcchhhHHHHHHHHHHHHHHHHHHhCCCHHHHhCCCC--
Confidence 333333 4589999999998866654322 1111211 122345799999999999999999999999999975
Q ss_pred ccccccccceeEE--EEeecCCC------CHH---------HHHHHHHHhhhcCCCEEEE--e-------ccCC----C-
Q 041113 634 DEEISKRSTSIKI--CALIDSNK------SPV---------EVASIATTLVEEGFTAIKL--K-------VARR----A- 682 (983)
Q Consensus 634 ~~~~~~~~~~i~~--~~~~~~~~------~~~---------~~~~~~~~~~~~G~~~~Ki--K-------ig~~----~- 682 (983)
++++|+ |.+++++. +.+ +..+++.++.++||+++|+ | +|.. +
T Consensus 163 -------~~~lpvp~~n~inGG~ha~~~~~~qEfmi~P~ga~~~~ea~~~~~egy~~lK~~lk~~g~~t~vGdeggfap~ 235 (449)
T 3uj2_A 163 -------ANRLPVPMMNILNGGAHAANTVDVQEFMIMPVGAESFREALRQCTEVFHALAGLLKSKGLATSVGDEGGFAPD 235 (449)
T ss_dssp -------CCBCCEECEEEEECSTTSSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCC
T ss_pred -------CCceeeeeEEEecCcccCCCccchhhhhhCCcccccHHHHHHHHHHHHHHHHHHHhhcCCccccCCCCCcCCC
Confidence 344444 66553221 112 2456778888899999998 4 5521 1
Q ss_pred --ChHHHHHHH-HHHHHH---cCCCcEEEEEcCC------------------CCCHHHHHHHHhh-cccCCCceeecCCC
Q 041113 683 --DPIKDAEVI-QEVRKK---VGHRIELRVDANR------------------NWTYQEALEFGFL-IKDCDLQYIEEPVQ 737 (983)
Q Consensus 683 --~~~~d~~~v-~~vr~~---~g~~~~l~vDaN~------------------~~~~~~a~~~~~~-l~~~~i~~iEeP~~ 737 (983)
+.++++++| ++||++ +|+++.|++|+|+ .||.++++++++. +++|++.|||||++
T Consensus 236 ~~~~~e~l~~i~~AIr~agy~~G~dv~l~vD~aase~~~~~~g~Y~l~~~~~~~t~~eai~~~~~lle~y~i~~IEdPl~ 315 (449)
T 3uj2_A 236 LASDEEAIEYILEAVKLAGYEPGRDFVLAMDAASSEWKGEKKGEYILPKCKRKFASEELVAHWKSLCERYPIVSIEDGLD 315 (449)
T ss_dssp CSCHHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGCBCSSTTEEECTTTCCEEEHHHHHHHHHHHHHHSCEEEEESCSC
T ss_pred ccCHHHHHHHHHHHHHHhccccCCceEEEEEcchhhhccccCceeeccCcccccCHHHHHHHHHHHHHhcCceEEECCCC
Confidence 246778877 788998 9999999999984 3689999999986 89999999999998
Q ss_pred --ChHHHHHHHhhc--CCcEEeCCCccC-cCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeC
Q 041113 738 --NEEDIIKYCEES--GLPVALDETIDK-FQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVS 811 (983)
Q Consensus 738 --~~~~~~~l~~~~--~ipIa~dEs~~~-~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~ 811 (983)
|++++++|++++ ++||++||++.+ .. .++.+++. .+|++++|++++||||++++++++|+++|+++|++
T Consensus 316 ~dD~eg~~~L~~~~~~~ipI~gDE~~~tn~~-----~~~~~i~~~a~d~i~iKv~~iGGiTea~kia~lA~~~Gi~~~v~ 390 (449)
T 3uj2_A 316 EEDWEGWQYMTRELGDKIQLVGDDLFVTNTE-----RLNKGIKERCGNSILIKLNQIGTVSETLEAIKMAHKAGYTAVVS 390 (449)
T ss_dssp TTCHHHHHHHHHHHTTTSEEEESTTTTTCHH-----HHHHHHHTTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEE
T ss_pred cchHHHHHHHHHHhCCCceEECCcceeCCHH-----HHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCeEEEe
Confidence 899999999988 799999999874 53 36666654 47999999999999999999999999999999999
Q ss_pred CCC-chHHHHHHHHHHHhhch
Q 041113 812 AAF-ESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 812 ~~~-es~ig~~a~~~laa~~~ 831 (983)
|+. ||..+..+.++++...+
T Consensus 391 H~sgET~d~~iadLaVa~~~~ 411 (449)
T 3uj2_A 391 HRSGETEDTTIADLAVALNTG 411 (449)
T ss_dssp CCSBCCSCCHHHHHHHHTTCC
T ss_pred CCCCCchHHHHHHHHHHhCCC
Confidence 976 78888888777776543
|
| >3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=342.31 Aligned_cols=305 Identities=17% Similarity=0.114 Sum_probs=229.9
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC------------------cCcccH
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE------------------IHKENL 554 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~------------------~~~~~~ 554 (983)
.+|++|..+.+- .+.+ +++|.|+|+|++|.+|+|.+ |.. |.++.+
T Consensus 3 ~~i~~~~~r~i~--------dsrg--------~ptvev~v~t~~G~~G~~~~-psgastG~~ea~elrd~~~~~y~gkgv 65 (428)
T 3tqp_A 3 ATITDINAHEIL--------DSRA--------NPTLEVRVTLSSQAYGCAAV-PSGASTGEREAVELRDNDLERYGGKGV 65 (428)
T ss_dssp CCEEEEEEEEEE--------CTTS--------CEEEEEEEEETTSCEEEEEC-CBCC---CCSCCCCCCCCTTSGGGTCC
T ss_pred ceEEEEEEEEEE--------cCCC--------CCEEEEEEEECCCCEEEEec-cccccCCcceeEeecCCCccccccccH
Confidence 479999988762 2222 68999999999999999954 332 122233
Q ss_pred HHHHHHH-HHHHhHhccCcccccccccccCchhhhhhhcCCC-CCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCC-CC
Q 041113 555 LDAEEQL-RFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIP-ACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYP-LT 631 (983)
Q Consensus 555 ~~~~~~l-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg-~~ 631 (983)
..+.+.+ +.+.|.|+|+++.+.+.++..+ ....+.. ......+|++|||+||||+.||.+|+|||+|||| ..
T Consensus 66 ~~av~~v~~~iap~LiG~d~~~~~~i~~~m-----~~~dgt~~k~~lg~nAi~aVd~Alwda~ak~~g~PLy~lLGG~~~ 140 (428)
T 3tqp_A 66 LQAVENVNGPIRDALLGQDPRSQEEIDRIM-----IELDGTENKANLGANAILGVSLAVAYAAANNADLPLYRYLGGDGG 140 (428)
T ss_dssp HHHHHHHHTHHHHHHTTCCTTCHHHHHHHH-----HHHHCCTTCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhcCCCccCHHHHHHHH-----HHhcCcCCcCccchhHHHHHHHHHHHHHHHHcCCCHHHHhCCCCC
Confidence 3344444 4589999999998765554322 1111111 1223457999999999999999999999999999 53
Q ss_pred ccccccccccceeEEEEeecCCC------CHHH---------HHHHHHHhhhcCCCEEEEe---------ccC----CCC
Q 041113 632 EIDEEISKRSTSIKICALIDSNK------SPVE---------VASIATTLVEEGFTAIKLK---------VAR----RAD 683 (983)
Q Consensus 632 ~~~~~~~~~~~~i~~~~~~~~~~------~~~~---------~~~~~~~~~~~G~~~~KiK---------ig~----~~~ 683 (983)
. .+.+||+|.+++++. +.++ ..+++.++.++||+++|+| +|. .++
T Consensus 141 ~-------~~~pvp~~~~inGG~ha~~~~~~qefmi~P~ga~~~~ea~~~~~egy~~lK~~l~~~g~~t~vGdegg~ap~ 213 (428)
T 3tqp_A 141 P-------FSMPVPMMNIINGGAHATNNLDFQEFMIVPVGAPTFAEALRYGAEVFHALKKRLVSRGLMSAVGDEGGFAPD 213 (428)
T ss_dssp C-------CCBCEEEEEEEECC----CCCSSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCC
T ss_pred C-------ceeeeEEEEEecCcccCCCccchhHHhhcCcchhhHHHHHHHHHHHHHhHhhhhcccccccccCCCCCcCCC
Confidence 1 146788888764321 1122 4567778888999999998 552 113
Q ss_pred hHHHHHH----HHHHHHH---cCCCcEEEEEc--------------CCCCCHHHHHHHHhh-cccCCCceeecCCC--Ch
Q 041113 684 PIKDAEV----IQEVRKK---VGHRIELRVDA--------------NRNWTYQEALEFGFL-IKDCDLQYIEEPVQ--NE 739 (983)
Q Consensus 684 ~~~d~~~----v~~vr~~---~g~~~~l~vDa--------------N~~~~~~~a~~~~~~-l~~~~i~~iEeP~~--~~ 739 (983)
.+.|.++ +++||++ +|+++.|++|+ |++||.++|+++++. +++|++.|||||++ |+
T Consensus 214 ~~~~~e~l~~i~~Air~agy~~G~dv~l~vD~aase~~~~g~Y~l~~~~~t~~eai~~~~~ll~~y~i~~IEdPl~~dD~ 293 (428)
T 3tqp_A 214 LPNNEAAFELILEAIEDANYVPGKDIYLALDAASSELYQNGRYDFENNQLTSEEMIDRLTEWTKKYPVISIEDGLSENDW 293 (428)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGSEETTEECCSSSCBCHHHHHHHHHHHHHHSCEEEEECCSCTTCH
T ss_pred cccHHHHHHHHHHHHHHhhcccCCceEEEEecchhhhccCCceeccccccCHHHHHHHHHHHHhhcccceEeCCCCcccH
Confidence 3345554 6899999 99999999999 589999999999998 89999999999998 89
Q ss_pred HHHHHHHhhcC--CcEEeCCC-ccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC-
Q 041113 740 EDIIKYCEESG--LPVALDET-IDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF- 814 (983)
Q Consensus 740 ~~~~~l~~~~~--ipIa~dEs-~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~- 814 (983)
+++++|+++++ +||++||. +.+.. .+..+++. .+|++++|++++||||++++++++|+++|+++|++|+.
T Consensus 294 eg~~~L~~~~~~pI~ivGDel~vt~~~-----~~~~~i~~~a~d~i~iKv~~iGGiTealkia~lA~~~G~~~~v~H~sG 368 (428)
T 3tqp_A 294 AGWKLLTERLENKVQLVGDDIFVTNPD-----ILEKGIKKNIANAILVKLNQIGTLTETLATVGLAKSNKYGVIISHRSG 368 (428)
T ss_dssp HHHHHHHHHHTTTSEEEESTTTTTCHH-----HHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSB
T ss_pred HHHHHHHHhcCCCcceeccccccCCHH-----HHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEEEeCCCC
Confidence 99999999887 66778885 45543 36666654 47999999999999999999999999999999999977
Q ss_pred chHHHHHHHHHHHhhch
Q 041113 815 ESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 815 es~ig~~a~~~laa~~~ 831 (983)
||..+..+.++++...+
T Consensus 369 Eted~~iadLaVa~~~~ 385 (428)
T 3tqp_A 369 ETEDTTIADLAVATDAR 385 (428)
T ss_dssp CCSCCHHHHHHHHTTCE
T ss_pred CchHHHHHHHHHHcCCC
Confidence 77788888888876544
|
| >3qn3_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, glycolysis, lyase; 2.13A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-37 Score=345.33 Aligned_cols=305 Identities=18% Similarity=0.145 Sum_probs=231.1
Q ss_pred CCccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-----------------cC
Q 041113 488 CSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-----------------IH 550 (983)
Q Consensus 488 ~~~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-----------------~~ 550 (983)
+.| .+|++|..+.+- .+.| +++|.|+|+|++|..|++.+ |.+ |.
T Consensus 2 ~~~--~~i~~i~~r~i~--------dsrG--------~ptvev~v~t~~g~~g~a~v-psgastg~~ea~elrd~~~~y~ 62 (417)
T 3qn3_A 2 NAM--LVIEDVRAYEVL--------DSRG--------NPTVKAEVTLSDGSVGAAIV-PSGASTGSKEALELRDNDERFG 62 (417)
T ss_dssp -CC--SBEEEEEEEEEE--------CTTS--------CEEEEEEEEETTCCEEEEEC-CCCBSSCSSSCBCCCCCSTGGG
T ss_pred CCC--ceeeEEEEEEEE--------cCCC--------CceEEEEEEECCCCEEEEec-CCCCccccceeeeecCCCcccc
Confidence 445 379999988762 2222 78999999999999999854 332 11
Q ss_pred cccHHHHHHHHH-HHHhHhccCcccccccccccCchhhhhhhcCCC-CCcchhhHHHHHHHHHHHHHHHHcCCChhhhcC
Q 041113 551 KENLLDAEEQLR-FLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIP-ACEIFPSVRCGLEMAILNAIAVKHGSSFLNILY 628 (983)
Q Consensus 551 ~~~~~~~~~~l~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLG 628 (983)
++.+..+...++ .+.|.|+|+++.+.+.++..+ ....+.. ......+|++|||+||||+.||.+|+|||+|||
T Consensus 63 gkgv~~av~~v~~~iap~LiG~d~~~~~~id~~m-----~~~dgt~~k~~lg~nAi~aVs~Al~da~ak~~g~PLy~lLG 137 (417)
T 3qn3_A 63 GKGVLKAVANVNETIADEILGLDAFNQTQLDDTL-----RELDGTNNYSNLGANATLGVSMATARAAAAALGMPLYRYLG 137 (417)
T ss_dssp GTCCHHHHHHHHTHHHHHHTTSBTTCHHHHHHHH-----HHHHCSSSCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHCCCCccCHHHHHHHH-----HHhhccCCCCchhhhhHHHHHHHHHHHHHHHhCCcHHHHhC
Confidence 223334444443 589999999998765554321 1111211 123446899999999999999999999999999
Q ss_pred CCCccccccccccceeEEEEe--ecCC------CCHHHH------HHHHHHhhhcC---CCEEEE---------eccCC-
Q 041113 629 PLTEIDEEISKRSTSIKICAL--IDSN------KSPVEV------ASIATTLVEEG---FTAIKL---------KVARR- 681 (983)
Q Consensus 629 g~~~~~~~~~~~~~~i~~~~~--~~~~------~~~~~~------~~~~~~~~~~G---~~~~Ki---------Kig~~- 681 (983)
|.. ++++|+|.. ++++ .+.+++ ++.++++++.| |+++|+ |+|..
T Consensus 138 G~~---------~~~lPv~~~nvinGG~ha~~~~~~qe~mi~P~ga~~~~ea~~~G~evy~~lK~~l~~kg~~t~vGdeg 208 (417)
T 3qn3_A 138 GAN---------ASILPVPMCNIINGGAHANNNVDFQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEG 208 (417)
T ss_dssp GGG---------CCEECEEEEEEEECGGGSSSSCCCSEEEEEECSCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTS
T ss_pred CCC---------CcceeeeeeeeecCcccCCCcccHHHHhcCccchHHHHHHHHHhHHHHHHHHHHHHhcCcccccCCCC
Confidence 975 467888742 2111 122222 33455566667 999888 66641
Q ss_pred ------CChHHHHHHH-HHHHHHcC--CCcEEEEEcCCC--------------CCHHHHHHHHhh-cccCCCceeecCCC
Q 041113 682 ------ADPIKDAEVI-QEVRKKVG--HRIELRVDANRN--------------WTYQEALEFGFL-IKDCDLQYIEEPVQ 737 (983)
Q Consensus 682 ------~~~~~d~~~v-~~vr~~~g--~~~~l~vDaN~~--------------~~~~~a~~~~~~-l~~~~i~~iEeP~~ 737 (983)
.++++|+++| +++|++ | |++.|++|+|++ ||.++++++++. +++|++.|||||++
T Consensus 209 g~ap~~~~~~e~l~~i~~Air~a-Gy~~dv~l~vD~~ase~~~~g~y~l~~~~~t~~eai~~~~~ll~~y~i~~IEdPl~ 287 (417)
T 3qn3_A 209 GFAPNLANNTEPIDLLMTCIKKA-GYENRVKIALDVASTEFFKDGKYHMEGKAFSSEALIERYVELCAKYPICSIEDGLA 287 (417)
T ss_dssp CBCCCCSSSSHHHHHHHHHHHHT-TCTTTEEEEEECCGGGGEETTEEEETTEEECHHHHHHHHHHHHHHSCEEEEESSSC
T ss_pred CcCCCcCCHHHHHHHHHHHHHHc-CCCCCceEEEECCchhhccCCeeecCCCccCHHHHHHHHHHHHhhcceeEEecCCC
Confidence 1357899999 899998 8 899999999986 579999999997 89999999999998
Q ss_pred --ChHHHHHHHhhc--CCcEEeCCCccC-cCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeC
Q 041113 738 --NEEDIIKYCEES--GLPVALDETIDK-FQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVS 811 (983)
Q Consensus 738 --~~~~~~~l~~~~--~ipIa~dEs~~~-~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~ 811 (983)
|++++++|++++ ++||++||++.+ .. .+..+++ ..+|++++|++++||||++++++++|+++|+++|++
T Consensus 288 ~dD~e~~~~L~~~~g~~ipI~gDE~~~tn~~-----~~~~~i~~~a~d~i~iKv~qiGGiTea~kia~lA~~~G~~v~vs 362 (417)
T 3qn3_A 288 ENDFEGWIKLTEKLGNKIQLVGDDLFVTNED-----ILREGIIKKMANAVLIKPNQIGTITQTMRTVRLAQRNNYKCVMS 362 (417)
T ss_dssp TTCHHHHHHHHHHHTTTSEEEESTTTTTCHH-----HHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEE
T ss_pred cccHHHHHHHHHhhCCCCceecCCcccCCHH-----HHHHHHHhCCCCEEEecCCCCCCHHHHHHHHHHHHHcCCeEEEe
Confidence 899999999988 599999999987 43 3565555 457999999999999999999999999999999999
Q ss_pred CCC-chHHHHHHHHHHHhhch
Q 041113 812 AAF-ESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 812 ~~~-es~ig~~a~~~laa~~~ 831 (983)
|+. ||..+..+.++++...+
T Consensus 363 h~sgEt~d~~iadlava~~~~ 383 (417)
T 3qn3_A 363 HRSGESEDAFIADFAVALNTG 383 (417)
T ss_dssp CCSSCCSCCHHHHHHHHTTCS
T ss_pred CCCCCchHHHHHHHHHHhCCC
Confidence 976 88888888888776544
|
| >2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-35 Score=330.48 Aligned_cols=290 Identities=14% Similarity=0.131 Sum_probs=209.2
Q ss_pred eeEEEEEEEECCCCEEEEeecCcC-----------------cCcccHHHHHHHHHH-HHhHhc--cCcccccccccccCc
Q 041113 525 REGFILSLYLEDGSVGYGEVAPLE-----------------IHKENLLDAEEQLRF-LLHFMT--GAKISYFLPLLKGSF 584 (983)
Q Consensus 525 ~~~~lv~v~t~~G~~G~GE~~~~~-----------------~~~~~~~~~~~~l~~-~~~~l~--g~~~~~~~~~~~~~~ 584 (983)
.+.++|+|+|++| +||||+.... |.++++..+...++. +.|.|+ |+++.+.+.++..
T Consensus 16 ~~tv~V~V~t~~G-~G~g~~psgastG~~ea~elrd~~~~~~~g~~v~~av~~v~~~iap~Li~~G~d~~~~~~i~~~-- 92 (436)
T 2al1_A 16 NPTVEVELTTEKG-VFRSIVPSGASTGVHEALEMRDGDKSKWMGKGVLHAVKNVNDVIAPAFVKANIDVKDQKAVDDF-- 92 (436)
T ss_dssp CEEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHTCCTTCHHHHHHH--
T ss_pred CcEEEEEEEECCc-eEEEeecccccCCcceeeeeccCccccccCccHHHHHHHHHHHHHHHHHHCCCChhhHHHHHHH--
Confidence 5789999999999 9999864321 122334444455554 899999 9998876554321
Q ss_pred hhhhhhhcCCC-CCcchhhHHHHHHHHHHHHHHHHcCCChhhhcC---CCCccccccccccceeEE--EEeecCCC----
Q 041113 585 SSWIWSTLGIP-ACEIFPSVRCGLEMAILNAIAVKHGSSFLNILY---PLTEIDEEISKRSTSIKI--CALIDSNK---- 654 (983)
Q Consensus 585 ~~~~~~~~~~~-~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLG---g~~~~~~~~~~~~~~i~~--~~~~~~~~---- 654 (983)
+...-+.. ......+|++||||||||+.||.+|+|||+||| |... .++++|+ |..+.++.
T Consensus 93 ---m~~~dgt~~~~~lg~~Ai~aVd~Al~Da~ak~~g~PLy~lLG~l~G~~~-------~~~~lpvp~~n~inGg~ha~~ 162 (436)
T 2al1_A 93 ---LISLDGTANKSKLGANAILGVSLAASRAAAAEKNVPLYKHLADLSKSKT-------SPYVLPVPFLNVLNGGSHAGG 162 (436)
T ss_dssp ---HHHHHCSTTSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTCCC-------TTEEECEEEEEEEECGGGSSS
T ss_pred ---HHHhcCCcccchhHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcccCCCC-------cCceeeEEEEEeecCccccCC
Confidence 11111111 123456899999999999999999999999999 8530 0133444 44331110
Q ss_pred -----------CHHHHHHHHHHhhhcCCCEEEE----e-------ccC----CCChHHHHHHHHHHHHH---cCC--CcE
Q 041113 655 -----------SPVEVASIATTLVEEGFTAIKL----K-------VAR----RADPIKDAEVIQEVRKK---VGH--RIE 703 (983)
Q Consensus 655 -----------~~~~~~~~~~~~~~~G~~~~Ki----K-------ig~----~~~~~~d~~~v~~vr~~---~g~--~~~ 703 (983)
...+..+++.++.+.||+++|. | +|. .++++.+.++++.+|++ .|+ ++.
T Consensus 163 ~~~~qefmi~p~~a~~~~ea~~~~~e~~~~lK~~l~~k~G~~a~~vGdegg~~p~~~~~~~~l~~i~~ai~~~G~~g~v~ 242 (436)
T 2al1_A 163 ALALQEFMIAPTGAKTFAEALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDGKVK 242 (436)
T ss_dssp SCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGSBCTTSCBCCCCSCHHHHHHHHHHHHHHHTCTTTCE
T ss_pred ccccccceecCcccccHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccCcCCCccCHHHHHHHHHHHHHHcCCCcceE
Confidence 0012334556666677887773 3 331 01234455556555554 476 799
Q ss_pred EEEEc----------------------CCCCCHHHHHHH-HhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCC
Q 041113 704 LRVDA----------------------NRNWTYQEALEF-GFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDET 758 (983)
Q Consensus 704 l~vDa----------------------N~~~~~~~a~~~-~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs 758 (983)
|++|+ |+.||.++++++ .+.+++|++.|||||++ |++++++|++++++||++||+
T Consensus 243 l~vD~aase~~~n~~y~~~~~~~~~~~~~~~t~~eai~~~~~~l~~y~i~~iEdPl~~dD~~g~~~l~~~~~ipI~gDE~ 322 (436)
T 2al1_A 243 IGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFAEDDWEAWSHFFKTAGIQIVADDL 322 (436)
T ss_dssp EEEECCGGGGEETTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHTTCCSEEEESTT
T ss_pred EEEechhhhhccCCceEEecccccccccccCCHHHHHHHHHHHHHhCCcEEEECCCCCcCHHHHHHHHhcCCCeEEECCc
Confidence 99999 555688999866 55678999999999998 899999999999999999999
Q ss_pred cc-CcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhchh
Q 041113 759 ID-KFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLEL 832 (983)
Q Consensus 759 ~~-~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~~ 832 (983)
.. +.. .+..+++.+ ++++++|++++||||++++++++|+++|+.++++|+. |+.++..+.+|++...++
T Consensus 323 ~vt~~~-----~~~~~i~~~a~d~i~ikv~qiGGitea~~ia~lA~~~g~~~~~sh~sgEt~~~~iA~lava~~~~~ 394 (436)
T 2al1_A 323 TVTNPK-----RIATAIEKKAADALLLKVNQIGTLSESIKAAQDSFAAGWGVMVSHRSGETEDTFIADLVVGLRTGQ 394 (436)
T ss_dssp TTTCHH-----HHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHHHTTCSE
T ss_pred ccCCHH-----HHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHhcCCc
Confidence 64 544 366666555 7999999999999999999999999999999998875 899999999999988764
|
| >2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=332.89 Aligned_cols=302 Identities=16% Similarity=0.152 Sum_probs=216.4
Q ss_pred EeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-----------------cCcccHHHH
Q 041113 495 ICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-----------------IHKENLLDA 557 (983)
Q Consensus 495 I~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-----------------~~~~~~~~~ 557 (983)
|++|+.+.+- .+. ..+.++|+|+|++|+ |||++.... |.++++..+
T Consensus 2 I~~v~~r~i~--------dsr--------g~~tv~V~V~t~~G~-G~~~~psgastG~~Ea~el~d~~~~~~~g~~v~~a 64 (439)
T 2akz_A 2 IEKIWAREIL--------DSR--------GNPTVEVDLYTAKGL-FRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKA 64 (439)
T ss_dssp CCEEEEEEEE--------CTT--------SCEEEEEEEEETTEE-EEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHH
T ss_pred eeEEEEEEEE--------cCC--------CCceEEEEEEECCCc-eEeeccCCCceeEEEEeeccCCCccccCCCcHHHH
Confidence 7788877652 222 157899999999999 998654311 122344444
Q ss_pred HHHHHH-HHhHhc--cCcccccccccccCchhhhhhhcCCC-CCcchhhHHHHHHHHHHHHHHHHcCCChhhhcC---CC
Q 041113 558 EEQLRF-LLHFMT--GAKISYFLPLLKGSFSSWIWSTLGIP-ACEIFPSVRCGLEMAILNAIAVKHGSSFLNILY---PL 630 (983)
Q Consensus 558 ~~~l~~-~~~~l~--g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLG---g~ 630 (983)
...++. +.|.|+ |+++.+.+.++.. +...-+.. ......+|++||||||||+.||.+|+|||+||| |.
T Consensus 65 v~~v~~~iap~Li~~G~d~~~~~~i~~~-----m~~~dgt~~~~~lg~nAi~aVs~Al~Da~ak~~g~PLy~lLG~~~G~ 139 (439)
T 2akz_A 65 VDHINSTIAPALISSGLSVVEQEKLDNL-----MLELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHIAQLAGN 139 (439)
T ss_dssp HHHHHHTHHHHHHHHCCCTTCHHHHHHH-----HHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHH-----HHHhcCCcccchHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcccCC
Confidence 555554 899999 9998876554321 11111111 123457899999999999999999999999999 86
Q ss_pred CccccccccccceeEE--EEeecCCC---------------CHHHHHHHHHHhhhcCCCEEEE----e-------ccC--
Q 041113 631 TEIDEEISKRSTSIKI--CALIDSNK---------------SPVEVASIATTLVEEGFTAIKL----K-------VAR-- 680 (983)
Q Consensus 631 ~~~~~~~~~~~~~i~~--~~~~~~~~---------------~~~~~~~~~~~~~~~G~~~~Ki----K-------ig~-- 680 (983)
. ++++|+ |..+.++. ...+..+++.++.++||+++|. | +|.
T Consensus 140 ~---------~~~lpvp~~~~inGg~ha~~~~~~qefmi~p~~a~~~~ea~~~~~e~~~~lK~~lk~k~G~~~~~vGdeg 210 (439)
T 2akz_A 140 S---------DLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEG 210 (439)
T ss_dssp C---------SCCBCEEEEEEEECGGGSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGCBCTTS
T ss_pred C---------CceeEEEEEEEecCccccccccccccceecCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCccc
Confidence 4 234554 33331110 0112234556666677887773 3 331
Q ss_pred --CCChHHHHHHHHHHHHH---cCC--CcEEEEEc---------------------CCCCCHHHHHHH-HhhcccCCCce
Q 041113 681 --RADPIKDAEVIQEVRKK---VGH--RIELRVDA---------------------NRNWTYQEALEF-GFLIKDCDLQY 731 (983)
Q Consensus 681 --~~~~~~d~~~v~~vr~~---~g~--~~~l~vDa---------------------N~~~~~~~a~~~-~~~l~~~~i~~ 731 (983)
.++++.+.++++.||++ +|+ ++.|++|+ |+.||.++++++ .+.+++|++.|
T Consensus 211 g~~p~~~~~~e~l~~i~~ai~~~G~~g~v~l~vD~a~se~~~~g~y~l~~~~~~~~~~~~t~~e~~~~~~~ll~~y~i~~ 290 (439)
T 2akz_A 211 GFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPVVS 290 (439)
T ss_dssp CBCCSCCCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTSSCCGGGCBCHHHHHHHHHHHHHHSCEEE
T ss_pred CcCCCcccHHHHHHHHHHHHHHcCCccceEEEEechHhhhccCCeeEEeccccccccccCCHHHHHHHHHHHHHhCCCcE
Confidence 01234455566666554 476 79999999 445788998777 45578999999
Q ss_pred eecCCC--ChHHHHHHHhhcCCcEEeCCCc-cCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCc
Q 041113 732 IEEPVQ--NEEDIIKYCEESGLPVALDETI-DKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKM 807 (983)
Q Consensus 732 iEeP~~--~~~~~~~l~~~~~ipIa~dEs~-~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~ 807 (983)
||||++ |++++++|++++++||++||+. .+.. .++.+++.+ ++++++|++++||||++++++++|+++|+.
T Consensus 291 IEdPl~~dD~~g~~~L~~~~~ipI~gDE~~vt~~~-----~~~~~i~~~a~d~i~iKv~qiGGitea~~ia~lA~~~g~~ 365 (439)
T 2akz_A 291 IEDPFDQDDWAAWSKFTANVGIQIVGDDLTVTNPK-----RIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWG 365 (439)
T ss_dssp EECCSCTTCHHHHHHHHHTCSSEEEESTTTTTCHH-----HHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCE
T ss_pred EECCCCcccHHHHHHHHhCCCCEEEeCCCccCCHH-----HHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHCCCe
Confidence 999998 8999999999999999999985 4654 466666555 799999999999999999999999999999
Q ss_pred EEeCCCC-chHHHHHHHHHHHhhchh
Q 041113 808 AVVSAAF-ESGLGLSAYIIFSSYLEL 832 (983)
Q Consensus 808 ~~~~~~~-es~ig~~a~~~laa~~~~ 832 (983)
++++|++ ||+++..+.+|++...++
T Consensus 366 ~~~sh~~gEt~~~~iA~lava~~~~~ 391 (439)
T 2akz_A 366 VMVSHRSGETEDTFIADLVVGLCTGQ 391 (439)
T ss_dssp EEEECCSBCCSCCHHHHHHHHHTCSE
T ss_pred EEeecCCCccHHHHHHHHHHHhcCCc
Confidence 9998865 899999999999988764
|
| >3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-21 Score=212.34 Aligned_cols=301 Identities=14% Similarity=0.110 Sum_probs=201.0
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCc------------------Cccc
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEI------------------HKEN 553 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~------------------~~~~ 553 (983)
.|.|++|..+.+- .+.| .++|-|+|+|++|.. .+ +.|.+. .+..
T Consensus 5 ~m~I~~i~ar~il--------dsrG--------nptvev~v~~~~g~~-ra-~vPsgaStG~~Ea~elrd~d~~~y~Gkg 66 (441)
T 3qtp_A 5 SMSIQKVHAREIL--------DSRG--------NPTIEVEITTGKGMF-RS-CVPSGASTGVHEAVELRDGDKKRYGGKG 66 (441)
T ss_dssp TTBCCEEEEEEEE--------CTTS--------CEEEEEEEEETTEEE-EE-ECCCCCSCCSSSCCCCCCCCTTSGGGTC
T ss_pred CcEEEEEEEEEEE--------CCCC--------CEEEEEEEEECCCcE-EE-ecccCCCCCcceeEeecCCCcccccCcc
Confidence 4689999988762 2232 788999999999876 44 333321 1111
Q ss_pred HH-HHHHHHHHHHhHhccCcccc---cccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcC-
Q 041113 554 LL-DAEEQLRFLLHFMTGAKISY---FLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILY- 628 (983)
Q Consensus 554 ~~-~~~~~l~~~~~~l~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLG- 628 (983)
+. .+...-..|.|.|+|.++.+ +..++...+.+..++ ..-..|+.||.+|++.+.|+..|+|||++||
T Consensus 67 v~kAv~~vn~~iap~Lig~~~~dQ~~iD~~m~~lDgT~nks-------~lGaNail~vSlAvakAaA~~~~~PLy~~l~~ 139 (441)
T 3qtp_A 67 VLKAVENVNTIIGPALLGKNVLNQAELDEMMIKLDGTNNKG-------KLGANAILGCSMSICRAAAAEKGLPLYKYLAE 139 (441)
T ss_dssp CHHHHHHHHHTHHHHHTTCBTTCHHHHHHHHHHHHCSTTCT-------TTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCcc-------CCCccchhhHHHHHHHHHHHhcCCcHHHHHHh
Confidence 22 23322245899999998875 222332222111111 2335789999999999999999999999997
Q ss_pred --CCCccccccccccceeEEEEeecCC-------------------CCHHH-------HHHHHHHhhh-c-CCCEEEEec
Q 041113 629 --PLTEIDEEISKRSTSIKICALIDSN-------------------KSPVE-------VASIATTLVE-E-GFTAIKLKV 678 (983)
Q Consensus 629 --g~~~~~~~~~~~~~~i~~~~~~~~~-------------------~~~~~-------~~~~~~~~~~-~-G~~~~KiKi 678 (983)
|.. ...-++|+...++++ .+..+ +-..++..++ . |..+ ..+
T Consensus 140 l~g~~-------~~~lPvP~~nvinGG~ha~n~l~~QEfmi~P~ga~sf~ealr~~~evyh~Lk~~l~~k~g~~~--t~v 210 (441)
T 3qtp_A 140 LTGHK-------EMTMPVPCFNVINGGAHAGNALAMQEFMICPTGATNFHEALRMAAETYQCLKVVIKAKYGQDA--TNV 210 (441)
T ss_dssp HHTCC-------CCCBCEEEEEEEECGGGCSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGG--GCB
T ss_pred hcCCC-------CceeccceEeeecCCccCCCccccceeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHhcCccc--ccc
Confidence 432 013456665544211 12222 1222233332 1 4211 122
Q ss_pred cCC----C---ChHHHHHHHHHHHHHcC--CCcEEEEEcC---------C-----------------CCCHHHHHHHHhh
Q 041113 679 ARR----A---DPIKDAEVIQEVRKKVG--HRIELRVDAN---------R-----------------NWTYQEALEFGFL 723 (983)
Q Consensus 679 g~~----~---~~~~d~~~v~~vr~~~g--~~~~l~vDaN---------~-----------------~~~~~~a~~~~~~ 723 (983)
|.. + +.++-++.|...-+..| .++.|.+|+- + .+|.++++++.+.
T Consensus 211 gdEGgfap~~~~~~eaL~ll~~Ai~~aGy~~~i~i~lD~Aasefy~~~~g~Y~l~f~~~~~~~~~~~~~t~~elid~y~~ 290 (441)
T 3qtp_A 211 GDEGGFAPNVSGAREALDLLVEAIAKAGYTGKIEIAMDCAASEFYNEETKKYDLGKKIPADKKDPSLVKDVDGLIAEYVD 290 (441)
T ss_dssp CTTSCBCCCCSSHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTTTEEETTTTSCGGGCCGGGEECHHHHHHHHHH
T ss_pred cCCcccCCCCCCHHHHHHHHHHHHHHcCCCceEEEccchhHHHhhhccCCeEEeecCCcccccccccccCHHHHHHHHHH
Confidence 321 1 23455666655555555 5788989862 1 2478999988777
Q ss_pred -cccCCCceeecCCC--ChHHHHHHHhhcC-CcEEeCCCcc-CcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHH
Q 041113 724 -IKDCDLQYIEEPVQ--NEEDIIKYCEESG-LPVALDETID-KFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLI 797 (983)
Q Consensus 724 -l~~~~i~~iEeP~~--~~~~~~~l~~~~~-ipIa~dEs~~-~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~ 797 (983)
+++|+|.|||||++ |+++|++|+++++ +||++||+.. +.. .+...++ ..++++++|++++||+|+++++
T Consensus 291 lle~ypI~~IEDPl~~dD~eg~a~Lt~~lg~i~IvGDEl~vTn~~-----~i~~~Ie~~a~n~IlIKvnqiGGITEalka 365 (441)
T 3qtp_A 291 YGKHYPIASIEDPFAEDDWAAWNKFTVEHGNFQIVGDDLLVTNPA-----RVQMAMDKNACNSVLIKVNQIGTLTETFKT 365 (441)
T ss_dssp HHHHSCEEEEESCSCTTCHHHHHHHHHHTTTSEEEESTTTTTCHH-----HHHHHHHHTCCSEEEECGGGTCCHHHHHHH
T ss_pred HhhhcceeeecCCCChHHHHHHHHHHHhcCCceEEeccccccCHH-----HHHHHHHcCCCCEEEecccccccHHHHHHH
Confidence 68999999999998 8999999999996 9999999854 443 3555554 4579999999999999999999
Q ss_pred HHHHHHcCCcEEeCCC-CchHHHHHHHHHHHhhch
Q 041113 798 ARWAQRHGKMAVVSAA-FESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 798 ~~~A~~~gi~~~~~~~-~es~ig~~a~~~laa~~~ 831 (983)
+++|+++|+.+|++|+ .||..+..+.++++...+
T Consensus 366 a~lA~~~G~~vmvsHrsgETeDt~iAdLAVal~~g 400 (441)
T 3qtp_A 366 IKMAQEKGWGVMASHRSGETEDTFIADLVVGLNCK 400 (441)
T ss_dssp HHHHHHTTCEEEEECCSSCCSCCHHHHHHHHTTCE
T ss_pred HHHHHHcCCeEEEeCCCCCccHhHHHHHHHHhCCC
Confidence 9999999999999886 488888888888776544
|
| >3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-19 Score=198.08 Aligned_cols=304 Identities=16% Similarity=0.123 Sum_probs=194.9
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCc------------------CcccH-
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEI------------------HKENL- 554 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~------------------~~~~~- 554 (983)
+|++|..+.+- .+.| .++|-|+|+|++|.. .+ +.|.+. .+..+
T Consensus 3 ~I~~i~areil--------dSrG--------npTvEv~v~~~~G~~-ra-~vPsGaStG~~Ea~elrD~d~~~y~Gkgv~ 64 (452)
T 3otr_A 3 VIKDIVAREIL--------DSRG--------NPTIEVDVSTEGGVF-RA-AVPSGASTGIYEALELRDKDPKRYLGKGVL 64 (452)
T ss_dssp CCCEEEEEEEE--------CTTS--------CEEEEEEEEETTEEE-EE-ECCCCBSSCSSSCBCCCCCCTTSGGGTCCH
T ss_pred cceEEEEEEEE--------cCCC--------CEEEEEEEEECCccE-EE-eccccCCCCcceEEeecCCCcccccCccHH
Confidence 78999988762 2232 788999999998865 44 233321 11112
Q ss_pred HHHHHHHHHHHhHhccCcccc---cccccc-cCchhhh-hhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCC
Q 041113 555 LDAEEQLRFLLHFMTGAKISY---FLPLLK-GSFSSWI-WSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYP 629 (983)
Q Consensus 555 ~~~~~~l~~~~~~l~g~~~~~---~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg 629 (983)
..+...-..|.|.|+|.++.+ +..++. ..+.+.. |. +.-..+-..|+-||.+|+..+.|...|+|||+.||+
T Consensus 65 kAv~~vn~~Iap~Lig~d~~dQ~~iD~~m~~~lDgT~n~~~---~~ks~lGaNail~vSlAvakAaA~~~~~PLy~yi~~ 141 (452)
T 3otr_A 65 NAVEIVRQEIKPALLGKDPCDQKGIDMLMVEQLDGTKNEWG---YSKSKLGANAILGVSIACCRAGAASKGLPLYKYIAT 141 (452)
T ss_dssp HHHHHHHHTHHHHHTTCCTTCHHHHHHHHHHTTTCCEETTE---ECCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCChHhHHHHHHHHHHHhcCCCCccc---ccccccCcchhhHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 223322245899999998875 333333 3222111 00 001123367899999999999999999999999983
Q ss_pred ---CCccccccccccceeEEEEeecC-------------------CCCHHH-------HHHHHHHhhh-c-CCCEEEEec
Q 041113 630 ---LTEIDEEISKRSTSIKICALIDS-------------------NKSPVE-------VASIATTLVE-E-GFTAIKLKV 678 (983)
Q Consensus 630 ---~~~~~~~~~~~~~~i~~~~~~~~-------------------~~~~~~-------~~~~~~~~~~-~-G~~~~KiKi 678 (983)
.. +. ...-++|+...+++ ..+..+ +-..++..++ . |..+ ..+
T Consensus 142 l~g~~--~~---~~~lPvP~~nvinGG~ha~n~l~~QEfmi~P~ga~sf~ealr~g~evyh~Lk~vl~~k~g~~~--t~v 214 (452)
T 3otr_A 142 LAGKT--ID---KMVMPVPFFNVINGGEHAGNGLALQEFLIAPVGAPNIREAIRYGSETYHHLKNVIKNKYGLDA--TNV 214 (452)
T ss_dssp HHTCC--SS---SEEECEECEEEEECGGGCSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGG--GCB
T ss_pred hcCCC--Cc---ceecccceEEEecCcccCCCCCCcCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCcc--ccc
Confidence 21 00 01234554443321 112222 1222233332 1 4211 122
Q ss_pred cCC----C---ChHHHHHHHHHHHHHcC--CCcEEEEEcCC------------------------CCCHHHHHHHHhh-c
Q 041113 679 ARR----A---DPIKDAEVIQEVRKKVG--HRIELRVDANR------------------------NWTYQEALEFGFL-I 724 (983)
Q Consensus 679 g~~----~---~~~~d~~~v~~vr~~~g--~~~~l~vDaN~------------------------~~~~~~a~~~~~~-l 724 (983)
|.. + +.++-++.|...-+..| .++.|-+|+-. .+|.+|++++.+. +
T Consensus 215 gDEGgfap~~~~~~eaL~ll~~Ai~~aGy~~~i~i~lD~Aasefy~~~~g~Y~l~fk~~~~~~~~~~t~~Elid~y~~ll 294 (452)
T 3otr_A 215 GDEGGFAPNVATAEEALNLLVEAIKAAGYEGKIKIAFDAAASEFYKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWL 294 (452)
T ss_dssp CTTSCBCCCCCSHHHHHHHHHHHHHHHTCTTTSEEEEECCGGGGEETTTTEEETTTTCSSCCGGGEECHHHHHHHHHHHH
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHHcCCCceEEEccccchHhheeccCCeEEeeccCCCCcccccccHHHHHHHHHHHH
Confidence 321 1 23445555544433444 47888888621 2478999999976 6
Q ss_pred ccCCCceeecCCC--ChHHHHHHHhhcC--CcEEeCCCcc-CcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHH
Q 041113 725 KDCDLQYIEEPVQ--NEEDIIKYCEESG--LPVALDETID-KFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIA 798 (983)
Q Consensus 725 ~~~~i~~iEeP~~--~~~~~~~l~~~~~--ipIa~dEs~~-~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~ 798 (983)
++|+|.|||||++ |+++|++|+++++ +||++||+.. +.. .+...++ ..++.+++|++++||+|++++++
T Consensus 295 e~ypIv~IEDPl~~dD~eg~a~Lt~~lg~~iqIvGDDl~vTn~~-----~i~~~Ie~~a~n~IlIKvnQIGgITEalka~ 369 (452)
T 3otr_A 295 KKYPIISVEDPFDQDDFASFSAFTKDVGEKTQVIGDDILVTNIL-----RIEKALKDKACNCLLLKVNQIGSVTEAIEAC 369 (452)
T ss_dssp HHSCEEEEECCSCTTCHHHHHHHHHHHTTTSEEEESTTTTTCHH-----HHHHHHHHTCCSEEEECHHHHCCHHHHHHHH
T ss_pred hhhCceEEecCCChhhHHHHHHHHHhhCCCeEEEeCccccCCHH-----HHHHHHhcCCCCEEEeeccccccHHHHHHHH
Confidence 8999999999999 8999999999987 9999999854 432 3555554 45799999999999999999999
Q ss_pred HHHHHcCCcEEeCCC-CchHHHHHHHHHHHhhc
Q 041113 799 RWAQRHGKMAVVSAA-FESGLGLSAYIIFSSYL 830 (983)
Q Consensus 799 ~~A~~~gi~~~~~~~-~es~ig~~a~~~laa~~ 830 (983)
++|+++|+.+|++|. -||.-...+.++++...
T Consensus 370 ~lA~~~G~~vmvshrSGETeD~~iAdLaVgl~~ 402 (452)
T 3otr_A 370 LLAQKSGWGVQVSHRSGETEDSFIADLVVGLRC 402 (452)
T ss_dssp HHHHHTTCEEEEECCSSCCSCCHHHHHHHHTTC
T ss_pred HHHHHcCCeEEEeCCCCCCchhHHHHHHHHcCC
Confidence 999999999999985 47776666666666543
|
| >3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.5e-17 Score=159.67 Aligned_cols=137 Identities=14% Similarity=0.136 Sum_probs=104.7
Q ss_pred cchhhHHHHHHHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhcc--ccccccchh
Q 041113 71 YTYCQMAEVLELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQ--NILFLDHLD 147 (983)
Q Consensus 71 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp--~~~~~g~~g 147 (983)
++...+++++++|++||||+|++|+|+. .++.+++++|+|++|+||++|++ | ||+||++|| +++.+|.+|
T Consensus 19 ~~~~~v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~-g------kg~~~~~hp~~~~~~~G~~G 91 (170)
T 3cf4_G 19 SKAVSPEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGS-S------LAVLADKDVDAKYINAHMLG 91 (170)
T ss_dssp CEECCHHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTT-T------HHHHTTSSSCEEECCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECcc-c------CcccCCCChhhhcceeeecc
Confidence 3445699999999999999999999986 45678999999999999999997 6 899999999 842278888
Q ss_pred hhccCccc---cccCCCCEEEEeCCcc--ccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeE--EE-EcCHHHHHHHH
Q 041113 148 HALLSESV---KDWIQFDVIIQIGSRI--TSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTH--RI-QSTIVQFVDFL 219 (983)
Q Consensus 148 ~~~~~~~~---~~~~~aDlvl~iG~~~--~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~--~i-~~d~~~~l~~L 219 (983)
..++...+ ..+++||+||++|+++ ++..+..|....+ .++|.++.+ +.++. .+ .-..++++++|
T Consensus 92 ~~~~~~~~~~~~~~~~aDlvl~iG~~~~~~~~~t~~~~~~~~-~~iI~i~~~-------~~~~~~~~~~~l~~~~~l~~L 163 (170)
T 3cf4_G 92 FYLTDPKWPGLDGNGNYDMIITIGFKKFYINQVLSAAKNFSN-LKTIAIERG-------YIQNATMSFGNLSKADHYAAL 163 (170)
T ss_dssp HHTTCTTCCCSSSSCCCSEEEEESCCHHHHHHHHHHHHHHCC-CCEEECSSS-------CCTTSSEECCCCCHHHHHHHH
T ss_pred ccCChhhhhHHHHhhcCCEEEEECCccCccccccccccccCC-CeEEEECCC-------cccchhhhhccCCHHHHHHHH
Confidence 88888887 8889999999999999 8777765654333 567744432 22211 11 11467777777
Q ss_pred Hhc
Q 041113 220 LKV 222 (983)
Q Consensus 220 ~~~ 222 (983)
.+.
T Consensus 164 ~~~ 166 (170)
T 3cf4_G 164 DEL 166 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.4e-17 Score=204.95 Aligned_cols=180 Identities=11% Similarity=0.052 Sum_probs=137.8
Q ss_pred CCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCC---cceeE-eecCCCCCccchHHH
Q 041113 256 LTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPH---QWIRV-AGNRGASGIDGLLST 331 (983)
Q Consensus 256 ~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~-~~~~G~mG~~g~lpa 331 (983)
+.+..+++.|.+.++++.+|+.|+|. +.+|+.++... |.+.- .++ .+.+. ..+.|+||+ |+|+
T Consensus 814 Cge~~~ik~l~ql~g~~~iian~tGc----~siw~~~~~~~---~~~~~----~~g~~p~~~~Slf~~~a~mG~--G~~~ 880 (1231)
T 2c42_A 814 CGETPYVRVITQLFGERMFIANATGC----SSIWGASAPSM---PYKTN----RLGQGPAWGNSLFEDAAEYGF--GMNM 880 (1231)
T ss_dssp CSSHHHHHHHHHHHGGGEEEEECSSH----HHHHHHBTTCC---CBCCC----TTSCCCEEECCCSTTHHHHHH--HHHH
T ss_pred CCcHHHHHHHHHhcCCCeEEEecCch----HHHHHhhcccC---Ccccc----cCCCCcceecccCcchHHHHH--HHHH
Confidence 45778999999999999999999999 88888765321 11110 011 22210 125589999 9999
Q ss_pred ---------------------------HH--------------------hhhhcc-C----------------ceEEEEE
Q 041113 332 ---------------------------AI--------------------GFAVGC-N----------------KHVLCVV 347 (983)
Q Consensus 332 ---------------------------ai--------------------GaalA~-~----------------~~vv~i~ 347 (983)
|| |++++. + ++||+|.
T Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~w~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~Vv~i~ 960 (1231)
T 2c42_A 881 SMFARRTHLADLAAKALESDASGDVKEALQGWLAGKNDPIKSKEYGDKLKKLLAGQKDGLLGQIAAMSDLYTKKSVWIFG 960 (1231)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTCCSHHHHHHHTTGGGTSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCchHHHHHhhhhhhccCCcEEEEe
Confidence 99 999974 3 7899999
Q ss_pred ccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccccc-cc---cc-CCCCCHHHHHHHcCCce
Q 041113 348 GDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQ-YF---YT-THNISIQNLCLAHGLNH 421 (983)
Q Consensus 348 GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~-~~---~~-~~~~df~~la~a~G~~~ 421 (983)
||| +|+|++|||.|+++ +++||++||+||+.|++++...... . ..... .+ +. ...+||.++|++||+.+
T Consensus 961 GDG~~~~mg~~eL~ta~~--~~~~v~iiVlnN~~yg~tg~Q~s~~-t--~~~~~t~~~~~g~~~~~~D~~~iA~a~G~~~ 1035 (1231)
T 2c42_A 961 GDGWAYDIGYGGLDHVLA--SGEDVNVFVMDTEVYSNTGGQSSKA-T--PTGAVAKFAAAGKRTGKKDLARMVMTYGYVY 1035 (1231)
T ss_dssp EHHHHHTTTHHHHHHHHH--TTCSCEEEEEECSSBTTTTCBCCTT-S--CTTCCBBTBTTCCSSCCCCHHHHHHTTSSSE
T ss_pred CcHHHHHcchHHHHHHHH--hCCCeEEEEEECHHHHhHHhhhccC-C--CCCceeeecccCCCCCchhHHHHHHHCCCCE
Confidence 999 99999999999999 9999999999999999997421110 0 00000 01 11 13589999999999999
Q ss_pred ee---e-CCHHHHHHHHHhhhccCCCEEEEEEcCcc
Q 041113 422 VQ---V-KTKVELEEALSMSQHLGTDRVIEVESCID 453 (983)
Q Consensus 422 ~~---v-~~~~eL~~aL~~a~~~~~p~lIeV~~~~~ 453 (983)
++ + +++++|.++|++|++.+||+||||.++..
T Consensus 1036 va~~~v~~~~~~l~~al~eAl~~~GP~lI~v~~~c~ 1071 (1231)
T 2c42_A 1036 VATVSMGYSKQQFLKVLKEAESFPGPSLVIAYATCI 1071 (1231)
T ss_dssp EEEECTTTCHHHHHHHHHHHHHSSSCEEEEEECCCG
T ss_pred EEEEeccCCHHHHHHHHHHHHhcCCCEEEEEeecCc
Confidence 85 3 59999999999999999999999999876
|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-15 Score=167.59 Aligned_cols=151 Identities=16% Similarity=0.163 Sum_probs=118.1
Q ss_pred EeecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhhc--cchHHHHHhhccCCCEEEEEEeCCCCccccCCC
Q 041113 316 VAGNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLHD--TNGLAILKQRMKRKPILMLVINNHGGAIFSLLP 388 (983)
Q Consensus 316 ~~~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~~--~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~ 388 (983)
+.++.|+||+ ++|.|+|+++|. ++.|||++|||+|++. ..+|.|+++ +++|+++||.|| +|++...
T Consensus 137 ~~~~~g~lG~--~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~--~~lpvi~vv~NN-~~gi~~~-- 209 (368)
T 1w85_A 137 VLPPQIIIGA--QYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGA--FKAPAIFVVQNN-RFAISTP-- 209 (368)
T ss_dssp BCCCCCSTTH--HHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHH--TTCCEEEEEEEC-SEETTEE--
T ss_pred cCCCccccCc--cccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHH--HCcCEEEEEEcC-Cccceec--
Confidence 4577899999 999999999995 6899999999999985 357999998 999988888777 5887521
Q ss_pred CCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhhc----cCCCEEEEEEcCcc-------cc
Q 041113 389 IADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQH----LGTDRVIEVESCID-------AN 455 (983)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~~----~~~p~lIeV~~~~~-------~~ 455 (983)
... ....+||.++|++||+++++|+ +++++.+++++|++ .++|+|||+.|.+. ++
T Consensus 210 ---------~~~---~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~Dd 277 (368)
T 1w85_A 210 ---------VEK---QTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDD 277 (368)
T ss_dssp ---------GGG---TCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC-
T ss_pred ---------ccc---ccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCCCC
Confidence 011 1135799999999999999998 79999999999875 57999999998651 11
Q ss_pred h---------------------------------HHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 456 A---------------------------------TFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 456 ~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
+ ..+.++.+++++.+..|+..+.+++.|+.
T Consensus 278 p~~yr~~~e~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~ 340 (368)
T 1w85_A 278 PTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKV 340 (368)
T ss_dssp -----CHHHHHHHHTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCCH
T ss_pred ccccCCHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 1 22334556667778888888888777753
|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-15 Score=168.03 Aligned_cols=149 Identities=17% Similarity=0.152 Sum_probs=111.9
Q ss_pred ecCCCCCccchHHHHHhhhhc----c-CceEEEEEccchhhhc-cch-HHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVG----C-NKHVLCVVGDISFLHD-TNG-LAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA----~-~~~vv~i~GDGsf~~~-~~e-L~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
.+.|.+|. ++|.|+|+++| . +++|||++|||+|+|+ ++| |.++++ +++|+++||.||+ |++...
T Consensus 141 ~~~g~lG~--~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~--~~lpvi~vv~NN~-~gi~~~---- 211 (367)
T 1umd_A 141 TVASPIAS--HVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAV--QGAPAVFIAENNF-YAISVD---- 211 (367)
T ss_dssp CCCSSTTT--THHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHH--TTCSEEEEEEECS-EETTEE----
T ss_pred CCCchhhh--hhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHH--hCcCEEEEEecCC-eeeccC----
Confidence 34466666 67777776665 4 7899999999999999 999 999998 9999888888887 988521
Q ss_pred CCCCccccccccccCCCCCHHHHHHHcCCceeeeCCHHHH------HHHHHhhhccCCCEEEEEEcCcc------c----
Q 041113 391 DRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVEL------EEALSMSQHLGTDRVIEVESCID------A---- 454 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL------~~aL~~a~~~~~p~lIeV~~~~~------~---- 454 (983)
... ....+||.+++++||+++++|+..+.+ +.+++++.+.++|+||||.|.+. +
T Consensus 212 -------~~~---~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D~~~~ 281 (367)
T 1umd_A 212 -------YRH---QTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSR 281 (367)
T ss_dssp -------HHH---HCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGG
T ss_pred -------hhh---ccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCCCCCCCCCccc
Confidence 111 113579999999999999999976666 56666666678999999999871 1
Q ss_pred -----------------------------chHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 455 -----------------------------NATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 455 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
+...+.++.+++.+.+..++..+..++.|+.
T Consensus 282 Yr~~~e~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~ 341 (367)
T 1umd_A 282 YRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPP 341 (367)
T ss_dssp TSCHHHHHHHHTTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCBCCG
T ss_pred cCCHHHHHHHHcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 1222335556677778888888887777754
|
| >1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-16 Score=154.28 Aligned_cols=109 Identities=19% Similarity=0.303 Sum_probs=83.9
Q ss_pred hHHHH-HHHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhh-hc-c--ccccccchhh
Q 041113 75 QMAEV-LELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLE-TE-Q--NILFLDHLDH 148 (983)
Q Consensus 75 ~i~~~-~~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~-~h-p--~~~~~g~~g~ 148 (983)
.++++ +++|++||||+|++|+ +. .++.+++++|+|+ ++||++|.+ | ||.||+ +| | ++++++..+.
T Consensus 23 ~i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~~-g------~g~~~~~~~~p~~~~~G~~~~g~ 93 (174)
T 1ytl_A 23 EKGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATGS-A------ITRFIDAGLGEKVNYAVLHELTQ 93 (174)
T ss_dssp CCHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEETT-H------HHHHHHTTCGGGSEEECHHHHHH
T ss_pred cHHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEccc-c------cCcCCCCCCCccccccccHHHHH
Confidence 37788 9999999999999999 86 4567899999999 999999998 6 899999 99 8 4333336666
Q ss_pred hccCcccccc---CCCCEEEEeCCccccHHH-HHHHHhcCC-ceEEEEc
Q 041113 149 ALLSESVKDW---IQFDVIIQIGSRITSKRI-SQMIEECFP-CTYILVD 192 (983)
Q Consensus 149 ~~~~~~~~~~---~~aDlvl~iG~~~~~~~~-~~~~~~~~~-~~~i~id 192 (983)
.+...++..+ ++|||||++|+|+.+..+ ++....+.+ .++||||
T Consensus 94 ~~~~~~~~~~~~~~~aDLvI~iG~rf~~~~~~t~~~~~fap~akii~Id 142 (174)
T 1ytl_A 94 FLLDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAID 142 (174)
T ss_dssp HHHSTTCCCTTSSCCCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred HhhhhhhhhhcccCCCCEEEEECCcCCccccccccccccCCCCeEEEeC
Confidence 6666655555 899999999999963222 223344544 5688865
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=8.3e-15 Score=164.68 Aligned_cols=145 Identities=15% Similarity=0.102 Sum_probs=112.2
Q ss_pred eecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhhc--cchHHHHHhhccCCCEEEEEEeCCCCccccCCCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLHD--TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPI 389 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~~--~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~ 389 (983)
.++.|+||+ ++|.|+|+++|. ++.|||++|||+|++. .++|.|+++ |++|+ |+|+|||+|++....
T Consensus 177 ~~~~g~lG~--~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~--~~lpv-i~Vv~NN~~gi~~~~-- 249 (407)
T 1qs0_A 177 FTISGNLAT--QFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHV--YRAPV-ILNVVNNQWAISTFQ-- 249 (407)
T ss_dssp CCCCSSSSH--HHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHH--HTCCE-EEEEEECSEETTEEG--
T ss_pred ccccccccc--chhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHH--HCcCE-EEEEECCCcceeecc--
Confidence 466799999 999999999984 6899999999999986 578999998 99995 555555589886321
Q ss_pred CCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhhc----cCCCEEEEEEcCcc------c---
Q 041113 390 ADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQH----LGTDRVIEVESCID------A--- 454 (983)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~~----~~~p~lIeV~~~~~------~--- 454 (983)
... ....+||.++|++||+++++|+ +++++.+++++|++ .++|+|||+.|.+. +
T Consensus 250 ---------~~~--~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~ 318 (407)
T 1qs0_A 250 ---------AIA--GGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPS 318 (407)
T ss_dssp ---------GGG--TTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGG
T ss_pred ---------ccc--cCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCCcc
Confidence 111 1135799999999999999999 67888888888764 58999999999761 1
Q ss_pred ------------------------------chHHHHHHHHHHHHHHHHHHhhhhc
Q 041113 455 ------------------------------NATFHSMLRKFARQSADHTLNVLSQ 479 (983)
Q Consensus 455 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (983)
+...+.++.+++++.+.+|+..+.+
T Consensus 319 ~Yr~~~e~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~ 373 (407)
T 1qs0_A 319 KYRPADDWSHFPLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQ 373 (407)
T ss_dssp GTSCTTHHHHCTTCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1233445667777778888888876
|
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=162.83 Aligned_cols=117 Identities=18% Similarity=0.204 Sum_probs=98.7
Q ss_pred eecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhhcc--chHHHHHhhccCCCEEEEEEeCCCCccccCCCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLHDT--NGLAILKQRMKRKPILMLVINNHGGAIFSLLPI 389 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~~~--~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~ 389 (983)
..+.|+||+ ++|.|+|+++|. ++.|||++|||+|+|+. ++|.|+++ +++|+++||.|| +|++....
T Consensus 158 ~~~~g~lG~--~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~--~~lpvi~vv~NN-~~~i~~~~-- 230 (400)
T 2bfd_A 158 VTISSPLAT--QIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAAT--LECPIIFFCRNN-GYAISTPT-- 230 (400)
T ss_dssp CCCCSSTTT--HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHH--TTCCEEEEEEEC-SEETTEEG--
T ss_pred cccCccccc--cccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHH--HCcCEEEEEECC-ceeeeecc--
Confidence 456699999 999999999985 58899999999999988 99999998 999988888777 88886321
Q ss_pred CCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhhc----cCCCEEEEEEcCc
Q 041113 390 ADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQH----LGTDRVIEVESCI 452 (983)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~~----~~~p~lIeV~~~~ 452 (983)
.. ....+||.+++++||+++++|+ +++++.+++++|++ .++|+|||+.|.+
T Consensus 231 ---------~~---~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR 287 (400)
T 2bfd_A 231 ---------SE---QYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYR 287 (400)
T ss_dssp ---------GG---TCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred ---------cc---cCCCCCHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeee
Confidence 10 1135799999999999999998 68899999988875 6899999999954
|
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5e-14 Score=156.25 Aligned_cols=148 Identities=12% Similarity=0.135 Sum_probs=112.5
Q ss_pred eecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhhc--cchHHHHHhhccCCCEEEEEEeCCCCccccCCCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLHD--TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPI 389 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~~--~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~ 389 (983)
.++.|+||+ ++|.|+|+++|. ++.|||++|||+|++. ..+|.|++. +++|+++||.|| +|++....
T Consensus 136 ~~~~g~~G~--~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~--~~lpvi~vv~NN-~~g~~t~~-- 208 (365)
T 2ozl_A 136 YGGNGIVGA--QVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAAL--WKLPCIFICENN-RYGMGTSV-- 208 (365)
T ss_dssp CCCCCSTTT--HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHH--TTCCEEEEEEEC-SEETTEEH--
T ss_pred CCCcchhhh--hhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHH--HCcCEEEEEECC-CcccCCCc--
Confidence 466689999 999999999996 6899999999999985 457999998 999987777555 78875321
Q ss_pred CCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhhc----cCCCEEEEEEcCcc------c---
Q 041113 390 ADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQH----LGTDRVIEVESCID------A--- 454 (983)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~~----~~~p~lIeV~~~~~------~--- 454 (983)
.+. ...+||.+ +++|+++++|+ +++++.+++++|++ .++|+|||+.+.+. +
T Consensus 209 ---------~~~---~~~~~~~~--ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~ 274 (365)
T 2ozl_A 209 ---------ERA---AASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGV 274 (365)
T ss_dssp ---------HHH---CSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSC
T ss_pred ---------ccc---cCCCCHHH--HhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCCCCc
Confidence 111 12467776 79999999998 79999999888763 68999999999650 0
Q ss_pred ---c----------------------------hHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 455 ---N----------------------------ATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 455 ---~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
. ...+.++.+++++.+..|+..+.+++.|+.
T Consensus 275 ~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~ 336 (365)
T 2ozl_A 275 SYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPL 336 (365)
T ss_dssp SSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHSCCCCG
T ss_pred ccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 1 122334456667778888888888887754
|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-14 Score=170.12 Aligned_cols=193 Identities=16% Similarity=0.134 Sum_probs=122.1
Q ss_pred CCHHHHHHHHHhhcC-CCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCC--cceeEeecCCCCCccchHHHH
Q 041113 256 LTEPHVAHELSRALT-SNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPH--QWIRVAGNRGASGIDGLLSTA 332 (983)
Q Consensus 256 ~~~~~~~~~l~~~l~-~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~G~mG~~g~lpaa 332 (983)
+....++.+|...+. +++.++.|.|.....+.++..+...+ ...|.+..-+..|. ...+...+.|+||+ ++|+|
T Consensus 56 lg~v~l~~aL~~~~~~~~D~~v~~~GH~~y~~~~l~G~~~~~-~~~r~~~g~~G~p~~~~s~~~~~~~G~~G~--gl~~A 132 (629)
T 2o1x_A 56 LGAVDIITALHYVLDSPRDRILFDVGHQAYAHKILTGRRDQM-ADIKKEGGISGFTKVSESEHDAITVGHAST--SLTNA 132 (629)
T ss_dssp HHTHHHHHHHHHHSCTTTSEEEESSSTTCHHHHHTTTTGGGG-GGTTSTTSCCSSCCGGGCTTCCSCCSSSSC--HHHHH
T ss_pred hhHHHHHHHHHhhcCCCCCeEEecCchHHHHHHHHhCcHhHH-hCcccCCCCCCCCCCCCCCCCCcCCCcccc--cHhHH
Confidence 344566666655555 67888888776332223333321111 22233321000010 11123567799999 99999
Q ss_pred Hhhhhc----c-CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC-C-CCC---cccccc
Q 041113 333 IGFAVG----C-NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA-D-RTE---PRILDQ 400 (983)
Q Consensus 333 iGaalA----~-~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~-~-~~~---~~~~~~ 400 (983)
+|+|+| . +++|||++|||+|+ |..++|.|+++ +++|+ ++|+|||+|+|....... . .+. ...+..
T Consensus 133 vG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~--~~~pl-i~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~ 209 (629)
T 2o1x_A 133 LGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGD--MGRKM-LIVLNDNEMSISENVGAMNKFMRGLQVQKWFQE 209 (629)
T ss_dssp HHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHH--HCCSE-EEEEEECSBSSSBCCSSHHHHC-----------
T ss_pred HHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHh--hCCCE-EEEEECCCCCCCCChhHHHHHHHHHhhchhHHH
Confidence 999999 3 78999999999999 88899999999 89997 555788899987543100 0 000 000000
Q ss_pred c----------cccC------CCCCHH---------HHHHHcCCcee-eeC--CHHHHHHHHHhhhccCCCEEEEEEcCc
Q 041113 401 Y----------FYTT------HNISIQ---------NLCLAHGLNHV-QVK--TKVELEEALSMSQHLGTDRVIEVESCI 452 (983)
Q Consensus 401 ~----------~~~~------~~~df~---------~la~a~G~~~~-~v~--~~~eL~~aL~~a~~~~~p~lIeV~~~~ 452 (983)
. ++.+ ...||. +++++||+++. +|+ +.++|.++|+++.+.++|+||||.|.+
T Consensus 210 ~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~~~P~lI~v~t~k 289 (629)
T 2o1x_A 210 GEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVDLDGPTILHIVTTK 289 (629)
T ss_dssp ----------------------------------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTTSSSEEEEEEECCT
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHhcCCCEEEEEEEec
Confidence 0 0000 011543 89999999998 886 999999999999888999999999987
Q ss_pred cc
Q 041113 453 DA 454 (983)
Q Consensus 453 ~~ 454 (983)
..
T Consensus 290 g~ 291 (629)
T 2o1x_A 290 GK 291 (629)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=164.36 Aligned_cols=117 Identities=16% Similarity=0.253 Sum_probs=103.0
Q ss_pred eecCCCCCccchHHHHHhhhhcc------------CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeCCCCc
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC------------NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINNHGGA 382 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~------------~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g 382 (983)
....|+||+ |+|+|+|+|+|. +++|+|++|||+|+ |+.++|.++.+ +++|.+|+|+|||+|+
T Consensus 110 ~~~tG~lG~--gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~--~~L~~livi~nnN~~~ 185 (632)
T 3l84_A 110 EIATGPLGQ--GVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGL--HKLDNFILIYDSNNIS 185 (632)
T ss_dssp CSCCCSTTH--HHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHH--TTCTTEEEEEEECSEE
T ss_pred ccCCcchhh--HHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHH--cCCCcEEEEEECCCcc
Confidence 345599999 999999999985 57899999999999 89999999999 9999999999999998
Q ss_pred cccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhhccCCCEEEEEEcCc
Q 041113 383 IFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQHLGTDRVIEVESCI 452 (983)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~~~~~p~lIeV~~~~ 452 (983)
|.... ... ...|+.+++++||+++.+|+ +.++|.++|+++.+.++|+||+|.|.+
T Consensus 186 i~~~~-----------~~~----~~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A~~~~~P~lI~v~T~k 242 (632)
T 3l84_A 186 IEGDV-----------GLA----FNENVKMRFEAQGFEVLSINGHDYEEINKALEQAKKSTKPCLIIAKTTI 242 (632)
T ss_dssp TTEEG-----------GGT----CCCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHHHTCSSCEEEEEECCT
T ss_pred cccch-----------hhh----cChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHHHhCCCCEEEEEeeEe
Confidence 87432 111 25799999999999999997 899999999999888999999999975
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-13 Score=164.28 Aligned_cols=118 Identities=17% Similarity=0.239 Sum_probs=100.3
Q ss_pred ecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINNHG 380 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN~g 380 (983)
...|+||+ |+|+|+|+|+|. +++|+|++|||+|+ |+.++|.++.+ +++|.+|+|+|||+
T Consensus 152 ~~tG~lG~--gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~--~~L~~livI~dnN~ 227 (711)
T 3uk1_A 152 TTTGPLGQ--GLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGT--LKLNKLIALYDDNG 227 (711)
T ss_dssp SCCCSTTH--HHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH--TTCTTEEEEEEECS
T ss_pred cCccchhh--HHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHH--hCCCcEEEEEECCC
Confidence 45699999 999999999985 46899999999999 78899999999 99999999999999
Q ss_pred CccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceee-eC--CHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 381 GAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQ-VK--TKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~-v~--~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
|+|.... ... ...||.+++++||+++.+ |+ +.++|.++|+++.+.++|+||+|.|.+..
T Consensus 228 ~~i~~~~-----------~~~----~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~~~~P~lI~v~T~kG~ 289 (711)
T 3uk1_A 228 ISIDGDV-----------VNW----FHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKRSDKPSLICCKTRIGN 289 (711)
T ss_dssp EETTEEG-----------GGT----CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHTTCSSCEEEEEEC----
T ss_pred cccccch-----------hhh----cCCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEEcccccc
Confidence 9886432 111 257999999999999998 74 89999999999988899999999998643
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-13 Score=162.97 Aligned_cols=117 Identities=16% Similarity=0.208 Sum_probs=98.4
Q ss_pred ecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINNHG 380 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN~g 380 (983)
...|+||+ |+|+|+|+|+|. +++|+|++|||+|+ |+.++|.++.+ +++|.+|+|+|||+
T Consensus 113 ~~tG~lG~--gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~--~~L~~livi~dnN~ 188 (663)
T 3kom_A 113 TTTGPLGQ--GVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGT--LGLNKLVAFWDDNN 188 (663)
T ss_dssp SCCCSTTH--HHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHH--HTCTTEEEEEEECC
T ss_pred cCCcchhh--HHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHH--hCCCeEEEEEECCC
Confidence 45699999 999999999985 37899999999998 78899999999 99999999999999
Q ss_pred CccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCcee-eeC--CHHHHHHHHHhhhc-cCCCEEEEEEcCcc
Q 041113 381 GAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHV-QVK--TKVELEEALSMSQH-LGTDRVIEVESCID 453 (983)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~-~v~--~~~eL~~aL~~a~~-~~~p~lIeV~~~~~ 453 (983)
|+|.... +.. ...||.+++++||+++. +|+ +.++|.++|+++.+ .++|+||+|.|.+.
T Consensus 189 ~~i~~~~-----------~~~----~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~~~~P~lI~~~T~kg 250 (663)
T 3kom_A 189 ISIDGDT-----------KGW----FSDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQQQKPTLICCKTVIG 250 (663)
T ss_dssp -----CG-----------GGT----CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHCSSSCEEEEEECCTT
T ss_pred cccccch-----------hhh----cchhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence 9887432 111 25799999999999999 886 89999999999987 69999999999864
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=162.94 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=103.1
Q ss_pred eecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINNH 379 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN~ 379 (983)
....|+||+ |+|+|+|+|+|. +++|+|++|||+|+ |+.++|.|+.+ +++|.+|+|+|||
T Consensus 114 ~~~~G~lG~--gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~--~~L~~li~i~~nN 189 (651)
T 2e6k_A 114 EVTTGPLGQ--GISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGH--WGLSKLIVFWDDN 189 (651)
T ss_dssp CSCCCSTTH--HHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH--TTCTTEEEEEEEC
T ss_pred eeccccccc--hHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHH--cCCCeEEEEEECC
Confidence 466799999 999999999983 57999999999999 78999999999 9999999999999
Q ss_pred CCccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCcee-eeC--CHHHHHHHHHhhhccCCCEEEEEEcCc
Q 041113 380 GGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHV-QVK--TKVELEEALSMSQHLGTDRVIEVESCI 452 (983)
Q Consensus 380 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~-~v~--~~~eL~~aL~~a~~~~~p~lIeV~~~~ 452 (983)
+|++.... ... ...|+.+++++||+++. +|+ +.++|.++|+++.+.++|+||+|.|.+
T Consensus 190 ~~~i~~~~-----------~~~----~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~~t~k 250 (651)
T 2e6k_A 190 RISIDGPT-----------DLA----FTEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKLDERPTLIAVRSHI 250 (651)
T ss_dssp CEETTEEG-----------GGT----CCSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHHSSSCEEEEEECCT
T ss_pred Cccccccc-----------ccc----cCccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEEEeEe
Confidence 99987431 111 24699999999999999 888 999999999999888999999999986
|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-13 Score=161.58 Aligned_cols=117 Identities=16% Similarity=0.250 Sum_probs=102.3
Q ss_pred ecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINNHG 380 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN~g 380 (983)
...|+||+ |+|+|+|+|+|. +++|+|++|||+++ |+.++|.++.+ +++|.+|+|+|||+
T Consensus 137 ~~tG~lG~--gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~--~~L~~livI~dnN~ 212 (690)
T 3m49_A 137 ATTGPLGQ--GIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAH--LQLGRLVVLYDSND 212 (690)
T ss_dssp SCCCSTTH--HHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHH--TTCTTEEEEEEECS
T ss_pred cCCccccc--cHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHH--hCCCeEEEEEECCC
Confidence 35599999 999999999985 56899999999999 78899999999 99999999999999
Q ss_pred CccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeee---CCHHHHHHHHHhhhc-cCCCEEEEEEcCcc
Q 041113 381 GAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQV---KTKVELEEALSMSQH-LGTDRVIEVESCID 453 (983)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v---~~~~eL~~aL~~a~~-~~~p~lIeV~~~~~ 453 (983)
|+|.... .. ....|+.+++++||+++.+| ++.++|.++|+++.+ .++|+||+|.|.+.
T Consensus 213 ~~i~~~~-----------~~----~~~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~~~~P~lI~v~T~kG 274 (690)
T 3m49_A 213 ISLDGDL-----------NR----SFSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLIEVRTTIG 274 (690)
T ss_dssp BCSSSBG-----------GG----TCCCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHHHHCCSSCEEEEEECCTT
T ss_pred eecccch-----------hh----ccchhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCEEEEEEeecc
Confidence 9887432 11 12478999999999999999 689999999999987 79999999998764
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-13 Score=161.33 Aligned_cols=115 Identities=19% Similarity=0.172 Sum_probs=99.0
Q ss_pred ecCCCCCccchHHHHHhhhhcc------CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeCCCCccccCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC------NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPI 389 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~------~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~ 389 (983)
.+.|+||+ |+|+|+|+++|. +++|+|++|||+|+ |+.++|.++.+ +++|.++||+|||+|++.....
T Consensus 118 ~~~G~lG~--gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~--~~l~~livi~nnN~~~i~~~~~- 192 (616)
T 3mos_A 118 VATGSLGQ--GLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASI--YKLDNLVAILDINRLGQSDPAP- 192 (616)
T ss_dssp SCCCSTTC--HHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHH--TTCTTEEEEEEECSBCSSSBCT-
T ss_pred ccccccCC--ccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHH--cCCCcEEEEEECCCCCCcCCcc-
Confidence 35699999 999999999984 47899999999999 89999999998 9999999999999998863210
Q ss_pred CCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhhccCCCEEEEEEcCc
Q 041113 390 ADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQHLGTDRVIEVESCI 452 (983)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~~~~~p~lIeV~~~~ 452 (983)
. .....||.+++++||+++.+|+ +.++|.++|+++ .++|+||||.|.+
T Consensus 193 ----------~---~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~--~~~P~lI~v~T~k 242 (616)
T 3mos_A 193 ----------L---QHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA--KHQPTAIIAKTFK 242 (616)
T ss_dssp ----------T---TTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC--CSSCEEEEEECCT
T ss_pred ----------c---ccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc--CCCCEEEEEEEec
Confidence 0 0124589999999999999995 899999999876 5899999999986
|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=157.55 Aligned_cols=191 Identities=14% Similarity=0.145 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHhhcC-CCceEEEecCcchhhhhhhcCCCccc--ccccccccccCCCCCcceeEeecCCCCCccchHHHH
Q 041113 256 LTEPHVAHELSRALT-SNSALFVGNSMAIRDLDMYGRNWTTC--THTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTA 332 (983)
Q Consensus 256 ~~~~~~~~~l~~~l~-~~~iv~~d~g~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaa 332 (983)
+....+...|...+. +++.++.|.|.....+.++......+ .++.++...- ..+...-....+.|+||+ ++|+|
T Consensus 54 lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y~~~~l~G~~~~~~~~r~~~g~~g~-~~~~~s~~~~~~~G~~G~--gl~~A 130 (621)
T 2o1s_A 54 LGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKGGLHPF-PWRGESEYDVLSVGHSST--SISAG 130 (621)
T ss_dssp HTTHHHHHHHHHHSCTTTSEEEESSSTTCHHHHHTTTTGGGGGGTTSTTSCCSS-CCTTTCTTCCSCCSSSSC--HHHHH
T ss_pred hhHHHHHHHHHhccCCCCCEEEEeCchHHHHHHHHhCCHhhhhcccccCCCCCC-CCCCCCCCCccCCcccch--HHHHH
Confidence 555666666766665 67788877665221122221110000 0111110000 000000011245799999 99999
Q ss_pred Hhhhhcc-----CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCC-----Ccccccc
Q 041113 333 IGFAVGC-----NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRT-----EPRILDQ 400 (983)
Q Consensus 333 iGaalA~-----~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~-----~~~~~~~ 400 (983)
+|+++|. +++|||++|||+|+ |+.++|.|+++ +++|++ +|+|||+|++.......... ....+..
T Consensus 131 ~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~--~~~pli-~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~ 207 (621)
T 2o1s_A 131 IGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGD--IRPDML-VILNDNEMSISENVGALNNHLAQLLSGKLYSS 207 (621)
T ss_dssp HHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHHHHHHHH--HCCSEE-EEEEECC-------------------------
T ss_pred HHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHh--hCCCEE-EEEeCCCcccCCCcchHHHHHHhhhcchhHHH
Confidence 9999994 78999999999999 77889999999 899985 55688899987653210000 0000000
Q ss_pred -------cccc--------CCCCCH-------HHHHHHcCCcee-eeC--CHHHHHHHHHhhhccCCCEEEEEEcCc
Q 041113 401 -------YFYT--------THNISI-------QNLCLAHGLNHV-QVK--TKVELEEALSMSQHLGTDRVIEVESCI 452 (983)
Q Consensus 401 -------~~~~--------~~~~df-------~~la~a~G~~~~-~v~--~~~eL~~aL~~a~~~~~p~lIeV~~~~ 452 (983)
.... ....|| ..++++||+++. +|+ +.++|.++|+++.+.++|+||||.|.+
T Consensus 208 ~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~~gP~lI~v~t~k 284 (621)
T 2o1s_A 208 LREGGKKVFSGVPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRDLKGPQFLHIMTKK 284 (621)
T ss_dssp -------------------------------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHSCSEEEEEEECCC
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHHcCCCEEEEEEEec
Confidence 0000 001244 689999999998 884 899999999999988999999999986
|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.3e-13 Score=161.67 Aligned_cols=118 Identities=13% Similarity=0.133 Sum_probs=103.2
Q ss_pred eecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINNH 379 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN~ 379 (983)
....|+||+ |+|+|+|+|+|. +++|+|++|||+|+ |+.++|.++.+ ++++.+|+|+|||
T Consensus 123 ~~~~G~lG~--gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~--~~L~~li~i~~nN 198 (675)
T 1itz_A 123 EVTTGPLGQ--GIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGH--WGLGKLIAFYDDN 198 (675)
T ss_dssp CSCCCSTTH--HHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH--TTCTTEEEEEEEC
T ss_pred eECCccHHh--HHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHH--hCCCcEEEEEECC
Confidence 456799999 999999999984 57899999999999 89999999999 9998889999999
Q ss_pred CCccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCcee-eeC---CHHHHHHHHHhhhc-cCCCEEEEEEcCcc
Q 041113 380 GGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHV-QVK---TKVELEEALSMSQH-LGTDRVIEVESCID 453 (983)
Q Consensus 380 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~-~v~---~~~eL~~aL~~a~~-~~~p~lIeV~~~~~ 453 (983)
+|+|.... ... ...|+.+++++||+++. +|+ +.++|.++|+++.+ .++|+||+|.|.+.
T Consensus 199 ~~~i~~~~-----------~~~----~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg 262 (675)
T 1itz_A 199 HISIDGDT-----------EIA----FTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIKVTTTIG 262 (675)
T ss_dssp SEETTEEG-----------GGT----CCSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCTT
T ss_pred CccCCCCh-----------hhh----cChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHHCCCCeEEEEEeeecc
Confidence 99986421 111 25799999999999998 888 99999999999987 68999999999873
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-13 Score=161.82 Aligned_cols=120 Identities=13% Similarity=0.165 Sum_probs=103.8
Q ss_pred EeecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeC
Q 041113 316 VAGNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINN 378 (983)
Q Consensus 316 ~~~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN 378 (983)
+..+.|+||+ |+|+|+|+|+|. +++|+|++|||+|+ |+.++|.++.+ +++|.+|+|+||
T Consensus 109 ~~~~~G~lG~--gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~--~~L~~li~i~~n 184 (669)
T 2r8o_A 109 VETTTGPLGQ--GIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGT--LKLGKLIAFYDD 184 (669)
T ss_dssp CCSCCCSTTH--HHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH--TTCTTEEEEEEE
T ss_pred cccccccccc--hHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHH--cCCCcEEEEEEC
Confidence 3467799999 999999999984 56899999999999 78999999998 999999999999
Q ss_pred CCCccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCcee-eeC--CHHHHHHHHHhhhc-cCCCEEEEEEcCccc
Q 041113 379 HGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHV-QVK--TKVELEEALSMSQH-LGTDRVIEVESCIDA 454 (983)
Q Consensus 379 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~-~v~--~~~eL~~aL~~a~~-~~~p~lIeV~~~~~~ 454 (983)
|+|+|.... .. ....|+.+++++||+++. +|+ +.++|.++++++.+ .++|+||+|.|.+..
T Consensus 185 N~~~i~~~~-----------~~----~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~ 249 (669)
T 2r8o_A 185 NGISIDGHV-----------EG----WFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLMCKTIIGF 249 (669)
T ss_dssp CSEETTEEG-----------GG----TCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHCCSSCEEEEEECCTTT
T ss_pred CCcEecccc-----------cc----ccCccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHhcCCCCEEEEEEeEecc
Confidence 999986421 10 124699999999999998 888 99999999999987 689999999998743
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.1e-13 Score=160.45 Aligned_cols=117 Identities=13% Similarity=0.160 Sum_probs=102.4
Q ss_pred eecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINNH 379 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN~ 379 (983)
....|+||+ |+|+|+|+++|. +++|+|++|||+|+ |+.++|.++.+ +++|.+|+|+|||
T Consensus 112 ~~~~G~lG~--gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~--~~L~~li~i~~nN 187 (680)
T 1gpu_A 112 EVTTGPLGQ--GISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGH--LKLGNLIAIYDDN 187 (680)
T ss_dssp CSCCCSTTH--HHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH--TTCTTEEEEEEEC
T ss_pred eeccccccc--hHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHH--hCCCcEEEEEECC
Confidence 456699999 999999999983 56899999999999 88999999998 9999889999999
Q ss_pred CCccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCcee-eeC---CHHHHHHHHHhhhc-cCCCEEEEEEcCc
Q 041113 380 GGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHV-QVK---TKVELEEALSMSQH-LGTDRVIEVESCI 452 (983)
Q Consensus 380 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~-~v~---~~~eL~~aL~~a~~-~~~p~lIeV~~~~ 452 (983)
+|+|.... .. ....|+.+++++||+++. +|+ +.++|.++++++.+ .++|+||||.|.+
T Consensus 188 ~~~i~~~~-----------~~----~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~~~~~P~lI~~~T~k 250 (680)
T 1gpu_A 188 KITIDGAT-----------SI----SFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTI 250 (680)
T ss_dssp SEETTEEG-----------GG----TCCCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHCTTSCEEEEEECCT
T ss_pred CceEeccc-----------cc----ccCccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHCCCCCEEEEEEeec
Confidence 99986431 11 124799999999999999 998 99999999999987 6899999999987
|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=5e-12 Score=152.10 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=100.6
Q ss_pred eecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNH 379 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~ 379 (983)
....|+||+ |+|.|+|+|+|. +++|+|++|||++++ ...++.++.+ +++|.+|+|+|||
T Consensus 112 ~~~tG~lG~--gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~--~~L~~li~i~d~N 187 (673)
T 1r9j_A 112 EVTTGPLGQ--GIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGH--LALEKLIVIYDSN 187 (673)
T ss_dssp CSCCCSTTH--HHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH--HTCTTEEEEEEEC
T ss_pred eeccCCCCC--cHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHH--hCCCcEEEEEECC
Confidence 356699999 999999999983 578999999999995 5788999998 9999899999999
Q ss_pred CCccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCcee-ee---CCHHHHHHHHHhhhc-cCCCEEEEEEcCc
Q 041113 380 GGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHV-QV---KTKVELEEALSMSQH-LGTDRVIEVESCI 452 (983)
Q Consensus 380 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~-~v---~~~~eL~~aL~~a~~-~~~p~lIeV~~~~ 452 (983)
+|++.... ... ...|+.+.+++||+++. +| ++.++|.++++++.+ .++|+||++.|.+
T Consensus 188 ~~~i~~~~-----------~~~----~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~~~~P~lI~~~T~k 250 (673)
T 1r9j_A 188 YISIDGST-----------SLS----FTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMIVQTTTI 250 (673)
T ss_dssp SBCSSSBG-----------GGT----CCCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCT
T ss_pred CCccccch-----------hhc----cCHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCCEEEEEeccc
Confidence 99886421 111 14689999999999999 88 789999999999986 7899999999976
|
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-09 Score=131.30 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=97.2
Q ss_pred ecCCCCCccchHHHHHhhhhcc------------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEe
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC------------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVIN 377 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~------------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~N 377 (983)
..-|.+|. |+|.|+|+|+|. +++|+|++|||+++. ....+.+|.. +++|-+|+|+|
T Consensus 130 ~~tG~lG~--gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~--~~L~nli~i~d 205 (700)
T 3rim_A 130 ITTGPLGQ--GLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAV--QQLGNLIVFYD 205 (700)
T ss_dssp SCCCSTTH--HHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHH--TTCTTEEEEEE
T ss_pred ccccccCC--cchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHH--cCCCcEEEEEE
Confidence 45589999 999999999973 478999999999995 4568899998 99987788999
Q ss_pred CCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeee---CCHHHHHHHHHhhhc-cCCCEEEEEEcCc
Q 041113 378 NHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQV---KTKVELEEALSMSQH-LGTDRVIEVESCI 452 (983)
Q Consensus 378 N~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v---~~~~eL~~aL~~a~~-~~~p~lIeV~~~~ 452 (983)
||+|++-... ... ...|+.+..++||+++.+| .+.++|.++++++.+ .++|+||++.|.+
T Consensus 206 ~N~~si~~~~-----------~~~----~~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~~~~~P~lI~~~T~k 269 (700)
T 3rim_A 206 RNQISIEDDT-----------NIA----LCEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQAVTDRPSFIALRTVI 269 (700)
T ss_dssp ECSEETTEEG-----------GGT----CCCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHCCSSCEEEEEECCT
T ss_pred CCCcccccch-----------hhc----cchhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHHcCCCCEEEEEEEEe
Confidence 9999775321 111 2468999999999999999 489999999999987 6899999999975
|
| >2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=133.54 Aligned_cols=118 Identities=13% Similarity=0.066 Sum_probs=95.0
Q ss_pred EeecCCCCCccchHHHHHhhhhcc-C--------------ceEEEEEccchh--hhccch-HHHHHhhccCCC---EEEE
Q 041113 316 VAGNRGASGIDGLLSTAIGFAVGC-N--------------KHVLCVVGDISF--LHDTNG-LAILKQRMKRKP---ILML 374 (983)
Q Consensus 316 ~~~~~G~mG~~g~lpaaiGaalA~-~--------------~~vv~i~GDGsf--~~~~~e-L~Ta~~~~~~lp---v~ii 374 (983)
...+-+.||. ++|.|+|+++|. . ..|+|+.|||+| ++.++| |.++.. +++| +++|
T Consensus 240 l~~n~s~Lg~--~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~--~~lp~g~vi~i 315 (868)
T 2yic_A 240 LTANPSHLEA--VDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALL--RGYRTGGTIHI 315 (868)
T ss_dssp ECCCCSSTTT--THHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTC--TTTCCSCCEEE
T ss_pred ecCCCccccc--cccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHh--cCCCCCCeEEE
Confidence 3455688999 999999999985 2 379999999998 689999 888887 8998 9888
Q ss_pred EEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhhc----cCCCEEEEE
Q 041113 375 VINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQH----LGTDRVIEV 448 (983)
Q Consensus 375 V~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~~----~~~p~lIeV 448 (983)
|.|| +|++.... ... ....++.++|++||+++++|+ +++++..+++.|.+ .++|+|||+
T Consensus 316 v~NN-~~g~st~~---------~~~-----~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~ 380 (868)
T 2yic_A 316 VVNN-QIGFTTAP---------TDS-----RSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDM 380 (868)
T ss_dssp EEEC-SCBTTBCH---------HHH-----CSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred EEcC-CcccccCc---------ccc-----ccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 8888 88876320 000 023567789999999999998 69999999888764 589999999
Q ss_pred EcCc
Q 041113 449 ESCI 452 (983)
Q Consensus 449 ~~~~ 452 (983)
.+.+
T Consensus 381 ~tyR 384 (868)
T 2yic_A 381 LCYR 384 (868)
T ss_dssp ECCC
T ss_pred Eeec
Confidence 9976
|
| >2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=98.84 E-value=6e-09 Score=130.59 Aligned_cols=117 Identities=13% Similarity=0.047 Sum_probs=93.0
Q ss_pred eecCCCCCccchHHHHHhhhhcc---C------------ceEEEEEccchh--hhccch-HHHHHhhccCCC---EEEEE
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC---N------------KHVLCVVGDISF--LHDTNG-LAILKQRMKRKP---ILMLV 375 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~---~------------~~vv~i~GDGsf--~~~~~e-L~Ta~~~~~~lp---v~iiV 375 (983)
..+-|.+|. ++|.|+|+++|. . ..++|+.|||+| +..++| |.++.. +++| +++||
T Consensus 486 ~~n~s~Lg~--~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~--~~lp~g~vi~iv 561 (1113)
T 2xt6_A 486 TANPSHLEA--VDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALL--RGYRTGGTIHIV 561 (1113)
T ss_dssp CCCCSSTTT--THHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTC--TTTCCSCCEEEE
T ss_pred cCCCccccc--cccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhh--cCCCCCCeEEEE
Confidence 455678999 999999999986 2 468999999998 788999 888776 8998 88888
Q ss_pred EeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhhc----cCCCEEEEEE
Q 041113 376 INNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQH----LGTDRVIEVE 449 (983)
Q Consensus 376 ~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~~----~~~p~lIeV~ 449 (983)
.|| +|++.... ... ....++.+++++||+++++|+ +++++..+++.|.+ .++|+|||+.
T Consensus 562 ~NN-~~gist~~---------~~~-----~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~ 626 (1113)
T 2xt6_A 562 VNN-QIGFTTAP---------TDS-----RSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDML 626 (1113)
T ss_dssp EEC-SCBTTBCH---------HHH-----CSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred EeC-CcccccCc---------ccc-----ccccCHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 887 78775310 000 012456678999999999999 99999999888764 5899999999
Q ss_pred cCc
Q 041113 450 SCI 452 (983)
Q Consensus 450 ~~~ 452 (983)
+.+
T Consensus 627 tyR 629 (1113)
T 2xt6_A 627 CYR 629 (1113)
T ss_dssp CCC
T ss_pred eEc
Confidence 876
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=98.82 E-value=3.9e-09 Score=114.87 Aligned_cols=44 Identities=32% Similarity=0.496 Sum_probs=42.3
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|||||||||++++..|.++++.|+++|+||++|+||||+|+++
T Consensus 29 g~~lvllHG~~~~~~~w~~~~~~L~~~~~via~Dl~G~G~S~~~ 72 (294)
T 1ehy_A 29 GPTLLLLHGWPGFWWEWSKVIGPLAEHYDVIVPDLRGFGDSEKP 72 (294)
T ss_dssp SSEEEEECCSSCCGGGGHHHHHHHHTTSEEEEECCTTSTTSCCC
T ss_pred CCEEEEECCCCcchhhHHHHHHHHhhcCEEEecCCCCCCCCCCC
Confidence 78999999999999999999999999999999999999999875
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=4.7e-09 Score=113.24 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=42.0
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||||||++++.+|..+++.|+++||||++|+||||+|+++
T Consensus 27 ~p~vvllHG~~~~~~~w~~~~~~L~~~~rvia~DlrGhG~S~~~ 70 (276)
T 2wj6_A 27 GPAILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLSPSE 70 (276)
T ss_dssp SCEEEEECCTTCCGGGGHHHHHHHTTTSCEEEECCTTCSSSCCC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhcCCEEEEeCCCCCCCCCCC
Confidence 58999999999999999999999999999999999999999875
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=9.4e-09 Score=113.20 Aligned_cols=54 Identities=35% Similarity=0.541 Sum_probs=45.9
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
++|...|++. +|||||||||++++..|..+++.|+++|+||++|+||||+|+++
T Consensus 19 l~y~~~G~g~---~~pvvllHG~~~~~~~w~~~~~~L~~~~~via~Dl~G~G~S~~~ 72 (316)
T 3afi_E 19 MAYRETGAQD---APVVLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKP 72 (316)
T ss_dssp EEEEEESCTT---SCEEEEECCTTCCGGGGTTTHHHHTTTSEEEEECCTTSTTSCCC
T ss_pred EEEEEeCCCC---CCeEEEECCCCCchHHHHHHHHHHhhCCEEEEECCCCCCCCCCC
Confidence 3445566521 34999999999999999999999998999999999999999875
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.3e-08 Score=107.03 Aligned_cols=52 Identities=23% Similarity=0.241 Sum_probs=45.5
Q ss_pred EEeecCCccCCCCceEEEeCCCCCChh-hHHHHHHHhhCCCEEEEEcCCCCCCCCC
Q 041113 926 KVQEIGQRIDIQDNILLFLHGFLGTGE-EWIPIMKAVSGSARCISIDLPGHGGSKM 980 (983)
Q Consensus 926 ~~~~~g~~~~~~~~~lv~lHG~~~~~~-~w~~~~~~l~~~~~vi~~Dl~G~G~S~~ 980 (983)
+|...|+.. +|+|||+||+++++. .|..+++.|+++|+||++|+||||+|+.
T Consensus 16 ~~~~~G~~~---~~~vvllHG~~~~~~~~w~~~~~~L~~~~~vi~~Dl~G~G~S~~ 68 (286)
T 2yys_A 16 YVEDVGPVE---GPALFVLHGGPGGNAYVLREGLQDYLEGFRVVYFDQRGSGRSLE 68 (286)
T ss_dssp EEEEESCTT---SCEEEEECCTTTCCSHHHHHHHGGGCTTSEEEEECCTTSTTSCC
T ss_pred EEEeecCCC---CCEEEEECCCCCcchhHHHHHHHHhcCCCEEEEECCCCCCCCCC
Confidence 345556433 789999999999999 8999999998889999999999999987
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-08 Score=109.25 Aligned_cols=65 Identities=22% Similarity=0.324 Sum_probs=52.9
Q ss_pred eeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 909 VLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
.+.+.+.+++..++| ...|+ +|||||+|||++++..|..+++.|+++|+||++|+||||.|+++.
T Consensus 5 ~~~~~~~~~~~~~~~----~~~g~-----g~~~vllHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~s~~~~ 69 (291)
T 3qyj_A 5 FEQTIVDTTEARINL----VKAGH-----GAPLLLLHGYPQTHVMWHKIAPLLANNFTVVATDLRGYGDSSRPA 69 (291)
T ss_dssp CEEEEEECSSCEEEE----EEECC-----SSEEEEECCTTCCGGGGTTTHHHHTTTSEEEEECCTTSTTSCCCC
T ss_pred cceeEEecCCeEEEE----EEcCC-----CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCCCCCCC
Confidence 455555555444333 55565 789999999999999999999999999999999999999998753
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.9e-08 Score=106.23 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=47.0
Q ss_pred EEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 926 KVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 926 ~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
+|...|++. +|+|||+||++.++..|.++++.|+++|+||++|+||||+|+++.
T Consensus 18 ~y~~~G~~~---~p~lvl~hG~~~~~~~w~~~~~~L~~~~~vi~~D~rG~G~S~~~~ 71 (266)
T 3om8_A 18 AYRLDGAAE---KPLLALSNSIGTTLHMWDAQLPALTRHFRVLRYDARGHGASSVPP 71 (266)
T ss_dssp EEEEESCTT---SCEEEEECCTTCCGGGGGGGHHHHHTTCEEEEECCTTSTTSCCCC
T ss_pred EEEecCCCC---CCEEEEeCCCccCHHHHHHHHHHhhcCcEEEEEcCCCCCCCCCCC
Confidence 345556533 789999999999999999999999999999999999999998753
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=98.66 E-value=8.6e-09 Score=113.25 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=41.6
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~~ 981 (983)
+|||||||||++++..|+.+++.|+++ ||||++|+||||+|+++
T Consensus 47 g~~vvllHG~~~~~~~w~~~~~~L~~~g~rvia~Dl~G~G~S~~~ 91 (310)
T 1b6g_A 47 EDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP 91 (310)
T ss_dssp SCEEEECCCTTCCGGGGTTTHHHHHHTTCEEEEECCTTSTTSCEE
T ss_pred CCEEEEECCCCCchhhHHHHHHHHHhCCCeEEEeCCCCCCCCCCC
Confidence 579999999999999999999999987 99999999999999865
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-08 Score=107.97 Aligned_cols=55 Identities=27% Similarity=0.541 Sum_probs=49.4
Q ss_pred eeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 922 CSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 922 ~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+++++|...|+ ++||||+||+++++..|..+++.|+++|+||++|+||||+|+.+
T Consensus 5 ~~~~~y~~~G~-----g~~vvllHG~~~~~~~~~~~~~~L~~~~~vi~~Dl~G~G~S~~~ 59 (269)
T 2xmz_A 5 HYKFYEANVET-----NQVLVFLHGFLSDSRTYHNHIEKFTDNYHVITIDLPGHGEDQSS 59 (269)
T ss_dssp SEEEECCSSCC-----SEEEEEECCTTCCGGGGTTTHHHHHTTSEEEEECCTTSTTCCCC
T ss_pred cceEEEEEcCC-----CCeEEEEcCCCCcHHHHHHHHHHHhhcCeEEEecCCCCCCCCCC
Confidence 45667777776 67999999999999999999999998999999999999999876
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-08 Score=110.12 Aligned_cols=44 Identities=23% Similarity=0.331 Sum_probs=41.4
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||||||++++..|+.+++.|+++ |+||++|+||||+|+++
T Consensus 46 g~~vvllHG~~~~~~~w~~~~~~L~~~g~rvia~Dl~G~G~S~~~ 90 (297)
T 2xt0_A 46 EHTFLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKP 90 (297)
T ss_dssp SCEEEEECCTTCCGGGGTTTHHHHHHTTCEEEEECCTTSTTSCEE
T ss_pred CCeEEEECCCCCcceeHHHHHHHHHhCCcEEEEeCCCCCCCCCCC
Confidence 589999999999999999999999886 99999999999999865
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.4e-08 Score=105.97 Aligned_cols=44 Identities=18% Similarity=0.406 Sum_probs=42.0
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||+++++..|..+++.|+++|+||++|+||||+|+.+
T Consensus 16 ~~~vvllHG~~~~~~~w~~~~~~L~~~~~via~Dl~G~G~S~~~ 59 (255)
T 3bf7_A 16 NSPIVLVHGLFGSLDNLGVLARDLVNDHNIIQVDVRNHGLSPRE 59 (255)
T ss_dssp CCCEEEECCTTCCTTTTHHHHHHHTTTSCEEEECCTTSTTSCCC
T ss_pred CCCEEEEcCCcccHhHHHHHHHHHHhhCcEEEecCCCCCCCCCC
Confidence 78999999999999999999999998899999999999999865
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-07 Score=104.73 Aligned_cols=44 Identities=30% Similarity=0.547 Sum_probs=41.5
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC--CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG--SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~--~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||+++++..|..+++.|++ +|+||++|+||||.|+.+
T Consensus 38 ~p~lvllHG~~~~~~~w~~~~~~L~~~~~~~via~Dl~GhG~S~~~ 83 (316)
T 3c5v_A 38 GPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKVK 83 (316)
T ss_dssp SCEEEEECCTTCCGGGGHHHHHHHHTTBCCEEEEECCTTSTTCBCS
T ss_pred CcEEEEECCCCcccccHHHHHHHHhhcCCeEEEEecCCCCCCCCCC
Confidence 68999999999999999999999998 899999999999999764
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.4e-08 Score=105.76 Aligned_cols=44 Identities=18% Similarity=0.512 Sum_probs=42.1
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||+++++..|.++++.|+++|+||++|+||||.|+.+
T Consensus 15 ~~~vvllHG~~~~~~~w~~~~~~L~~~~~vi~~Dl~G~G~S~~~ 58 (268)
T 3v48_A 15 APVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDT 58 (268)
T ss_dssp CCEEEEECCTTCCGGGGHHHHHHHHTTSEEEECCCTTBTTBCCC
T ss_pred CCEEEEeCCCCccHHHHHHHHHHHhhcCeEEEECCCCCCCCCCC
Confidence 79999999999999999999999999999999999999999764
|
| >2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=6.6e-08 Score=118.78 Aligned_cols=116 Identities=13% Similarity=0.072 Sum_probs=85.0
Q ss_pred ecCCCCCccchHHHHHhhhhcc-Cc---------eEEEEEccchh--hhccch-HHHHHhhccCCC---EEEEEEeCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-NK---------HVLCVVGDISF--LHDTNG-LAILKQRMKRKP---ILMLVINNHGG 381 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-~~---------~vv~i~GDGsf--~~~~~e-L~Ta~~~~~~lp---v~iiV~NN~g~ 381 (983)
.+-+.+|. ++|.|+|+++|. .+ .|||++|||+| +..+.| |.++.. +++| +++||.||+ |
T Consensus 318 ~~~shlg~--~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~--~~lp~gg~I~vv~nN~-~ 392 (933)
T 2jgd_A 318 FNPSHLEI--VSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKA--RGYEVGGTVRIVINNQ-V 392 (933)
T ss_dssp CCCSSTTC--HHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTS--TTTCCSCCEEEEEECC--
T ss_pred ccCccccc--ccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhc--cCCCCCceEEEEEeCC-c
Confidence 45577888 999999999996 32 79999999998 778888 787776 8999 877777665 8
Q ss_pred cccc-CCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeCC--HHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 382 AIFS-LLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKT--KVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 382 g~~~-~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~--~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
++.. .. .. .....++.+++++||+++++|+- ++++.+++++|. ..++|+|||+.+.+
T Consensus 393 ~ist~~~-----------~~---~~~~~~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR 456 (933)
T 2jgd_A 393 GFTTSNP-----------LD---ARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYR 456 (933)
T ss_dssp ----------------------------CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_pred cccCCCH-----------Hh---cccchhHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeee
Confidence 7763 21 00 01234678889999999999974 888888888876 35899999999876
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=8.6e-08 Score=105.73 Aligned_cols=51 Identities=27% Similarity=0.484 Sum_probs=44.8
Q ss_pred EEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 926 KVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 926 ~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
+|...|+ +|+|||+|||++++..|..+++.|.+ +|+||++|+||||+|+.+
T Consensus 24 ~y~~~G~-----g~~vvllHG~~~~~~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~ 75 (328)
T 2cjp_A 24 HLAELGE-----GPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDTTGA 75 (328)
T ss_dssp EEEEECS-----SSEEEEECCTTCCGGGGHHHHHHHHTTTCEEEEECCTTSTTCBCC
T ss_pred EEEEcCC-----CCEEEEECCCCCchHHHHHHHHHHHHCCcEEEEECCCCCCCCCCc
Confidence 3455564 78999999999999999999999976 599999999999999875
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=6.4e-08 Score=105.23 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=44.1
Q ss_pred EEeecCCccCCCCceEEEeCCCCCChhhHHHHH-HHhhCC-CEEEEEcCCCCCCCCC
Q 041113 926 KVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIM-KAVSGS-ARCISIDLPGHGGSKM 980 (983)
Q Consensus 926 ~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~-~~l~~~-~~vi~~Dl~G~G~S~~ 980 (983)
+|...|+.. +|+|||+||+++++..|..++ +.|+++ |+||++|+||||+|++
T Consensus 14 ~y~~~G~~~---~~~vvllHG~~~~~~~w~~~~~~~L~~~G~~vi~~D~rG~G~S~~ 67 (298)
T 1q0r_A 14 WSDDFGDPA---DPALLLVMGGNLSALGWPDEFARRLADGGLHVIRYDHRDTGRSTT 67 (298)
T ss_dssp EEEEESCTT---SCEEEEECCTTCCGGGSCHHHHHHHHTTTCEEEEECCTTSTTSCC
T ss_pred EEEeccCCC---CCeEEEEcCCCCCccchHHHHHHHHHhCCCEEEeeCCCCCCCCCC
Confidence 345556433 789999999999999998754 999887 9999999999999986
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=98.56 E-value=7.3e-08 Score=103.36 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=45.9
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~~ 981 (983)
++|...|+.. +|+|||+||+++++..|..+++.|+++ |+||++|+||||+|+.+
T Consensus 12 l~y~~~g~~~---~~~vvllHG~~~~~~~w~~~~~~L~~~g~~vi~~D~~G~G~S~~~ 66 (276)
T 1zoi_A 12 IFYKDWGPRD---APVIHFHHGWPLSADDWDAQLLFFLAHGYRVVAHDRRGHGRSSQV 66 (276)
T ss_dssp EEEEEESCTT---SCEEEEECCTTCCGGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC
T ss_pred EEEEecCCCC---CCeEEEECCCCcchhHHHHHHHHHHhCCCEEEEecCCCCCCCCCC
Confidence 3445556433 789999999999999999999999876 99999999999999865
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.7e-08 Score=108.52 Aligned_cols=64 Identities=30% Similarity=0.415 Sum_probs=50.6
Q ss_pred EEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 911 RYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
.+.+.+++.. ++|...|++. +|+||||||+++++..|..+++.|+++|+||++|+||||+|+.+
T Consensus 23 ~~~~~~~g~~----l~y~~~G~g~---~~~vvllHG~~~~~~~w~~~~~~L~~~~~via~Dl~GhG~S~~~ 86 (318)
T 2psd_A 23 CKQMNVLDSF----INYYDSEKHA---ENAVIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKS 86 (318)
T ss_dssp CEEEEETTEE----EEEEECCSCT---TSEEEEECCTTCCGGGGTTTGGGTTTTSEEEEECCTTSTTCCCC
T ss_pred ceEEeeCCeE----EEEEEcCCCC---CCeEEEECCCCCcHHHHHHHHHHhhhcCeEEEEeCCCCCCCCCC
Confidence 3445554433 3345556532 56999999999999999999999998999999999999999875
|
| >2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-07 Score=115.07 Aligned_cols=119 Identities=17% Similarity=0.098 Sum_probs=94.9
Q ss_pred ecCCCCCccchHHHHHhhhhc----------c--CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeCCCCcc
Q 041113 318 GNRGASGIDGLLSTAIGFAVG----------C--NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINNHGGAI 383 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA----------~--~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~ 383 (983)
..-|.||. |+++|+|+|++ . +++|+|++|||++. ++...|..+.+ ++++-+|+|+|||++.+
T Consensus 189 ~~tG~~G~--g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~--~~L~nli~Vvn~N~~si 264 (886)
T 2qtc_A 189 FPTVSMGL--GPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATR--EKLDNLVFVINCNLQRL 264 (886)
T ss_dssp CCCCSTTH--HHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHH--TTCTTEEEEEEECSBCS
T ss_pred ccccccCc--cHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHH--cCCCcEEEEEECCCccc
Confidence 44589999 99999999997 2 68999999999998 78999999998 89987788889998866
Q ss_pred ccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--------------------------------------
Q 041113 384 FSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK-------------------------------------- 425 (983)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~-------------------------------------- 425 (983)
-... ..+ ....-++.++.+++|.+..+|.
T Consensus 265 ~~~v---------~~~----~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~ 331 (886)
T 2qtc_A 265 DGPV---------TGN----GKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGA 331 (886)
T ss_dssp SSBS---------CTT----SCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHH
T ss_pred CCCc---------ccc----ccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccch
Confidence 4211 000 0012368889999999998883
Q ss_pred ---------------------------------CHHHHHHHHHhhhcc-CCCEEEEEEcCcc
Q 041113 426 ---------------------------------TKVELEEALSMSQHL-GTDRVIEVESCID 453 (983)
Q Consensus 426 ---------------------------------~~~eL~~aL~~a~~~-~~p~lIeV~~~~~ 453 (983)
+.++|.++++++.+. ++|+||++.|-+.
T Consensus 332 ~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~~~~PtlI~~~T~KG 393 (886)
T 2qtc_A 332 YVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKATVILAHTIKG 393 (886)
T ss_dssp HHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHCCSSCEEEEEECCTT
T ss_pred HHHHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHHcCCCCEEEEEeeeec
Confidence 688999999998764 6999999999763
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=98.54 E-value=9.4e-08 Score=102.11 Aligned_cols=44 Identities=23% Similarity=0.349 Sum_probs=41.8
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||+++++..|.++++.|+++|+||++|+||||.|+.+
T Consensus 26 ~~~vvllHG~~~~~~~~~~~~~~L~~~~~vi~~D~~G~G~S~~~ 69 (266)
T 2xua_A 26 APWIVLSNSLGTDLSMWAPQVAALSKHFRVLRYDTRGHGHSEAP 69 (266)
T ss_dssp CCEEEEECCTTCCGGGGGGGHHHHHTTSEEEEECCTTSTTSCCC
T ss_pred CCeEEEecCccCCHHHHHHHHHHHhcCeEEEEecCCCCCCCCCC
Confidence 68999999999999999999999998899999999999999865
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=98.54 E-value=5.5e-08 Score=104.78 Aligned_cols=55 Identities=24% Similarity=0.350 Sum_probs=47.2
Q ss_pred eEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCCC
Q 041113 923 SFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 923 ~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~~ 982 (983)
.+++|...|+ ++||||||||++++..|..+++.|.+ +|+||++|+||||+|+++.
T Consensus 17 ~~l~y~~~G~-----g~~vvllHG~~~~~~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~ 72 (281)
T 3fob_A 17 IEIYYEDHGT-----GKPVVLIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKSSQPW 72 (281)
T ss_dssp EEEEEEEESS-----SEEEEEECCTTCCGGGGTTTHHHHHHTTEEEEEECCTTSTTSCCCS
T ss_pred eEEEEEECCC-----CCeEEEECCCCCcHHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCc
Confidence 3455666776 78999999999999999999999965 5999999999999998763
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=98.53 E-value=7.1e-08 Score=104.33 Aligned_cols=54 Identities=26% Similarity=0.293 Sum_probs=46.2
Q ss_pred EEEEeecCCccCCCCceEEEeCCCC---CChhhHHHHH-HHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 924 FIKVQEIGQRIDIQDNILLFLHGFL---GTGEEWIPIM-KAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 924 ~~~~~~~g~~~~~~~~~lv~lHG~~---~~~~~w~~~~-~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
+++|...|+ +|+|||+||++ ++...|..++ +.|+++|+||++|+||||+|+.+.
T Consensus 24 ~l~y~~~G~-----g~~vvllHG~~~~~~~~~~w~~~~~~~L~~~~~vi~~D~~G~G~S~~~~ 81 (286)
T 2puj_A 24 NIHYNEAGN-----GETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVV 81 (286)
T ss_dssp EEEEEEECC-----SSEEEEECCCSTTCCHHHHHTTTHHHHHHTTCEEEEECCTTSTTSCCCC
T ss_pred EEEEEecCC-----CCcEEEECCCCCCCCcHHHHHHHHHHHHhccCEEEEECCCCCCCCCCCC
Confidence 344456665 68999999998 7888999999 999988999999999999998763
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=98.53 E-value=6.2e-08 Score=104.63 Aligned_cols=52 Identities=21% Similarity=0.359 Sum_probs=43.2
Q ss_pred EEeecCCccCCCCceEEEeCCCCCCh---hhHHHHHHHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 926 KVQEIGQRIDIQDNILLFLHGFLGTG---EEWIPIMKAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 926 ~~~~~g~~~~~~~~~lv~lHG~~~~~---~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
+|...|+ +|+|||+|||+.++ ..|..+++.|+++|+||++|+||||+|+.+.
T Consensus 18 ~y~~~G~-----g~~vvllHG~~~~~~~~~~w~~~~~~L~~~~~vi~~Dl~G~G~S~~~~ 72 (282)
T 1iup_A 18 NYHDVGE-----GQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPE 72 (282)
T ss_dssp EEEEECC-----SSEEEEECCCCTTCCHHHHHTTTHHHHTTTSEEEEECCTTSTTSCCCT
T ss_pred EEEecCC-----CCeEEEECCCCCCccHHHHHHHHHHhhccCCEEEEECCCCCCCCCCCC
Confidence 3455565 68999999998654 4888999999889999999999999998753
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-07 Score=101.59 Aligned_cols=52 Identities=31% Similarity=0.482 Sum_probs=45.6
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
++|...|+ ++||||+|||++++..|..+++.|.+ +|+||++|+||||+|+.+
T Consensus 11 l~y~~~G~-----g~~vvllHG~~~~~~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~ 63 (271)
T 3ia2_A 11 IYFKDWGS-----GKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63 (271)
T ss_dssp EEEEEESS-----SSEEEEECCTTCCGGGGHHHHHHHHTTTCEEEEECCTTSTTSCCC
T ss_pred EEEEccCC-----CCeEEEECCCCCcHHHHHHHHHHHHhCCceEEEecCCCCccCCCC
Confidence 34566675 68999999999999999999999976 599999999999999865
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-07 Score=101.28 Aligned_cols=44 Identities=18% Similarity=0.369 Sum_probs=41.8
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||+++++..|..+++.|+++|+||++|+||||+|+.+
T Consensus 29 ~~~vvllHG~~~~~~~~~~~~~~L~~~~~vi~~Dl~G~G~S~~~ 72 (285)
T 3bwx_A 29 RPPVLCLPGLTRNARDFEDLATRLAGDWRVLCPEMRGRGDSDYA 72 (285)
T ss_dssp SCCEEEECCTTCCGGGGHHHHHHHBBTBCEEEECCTTBTTSCCC
T ss_pred CCcEEEECCCCcchhhHHHHHHHhhcCCEEEeecCCCCCCCCCC
Confidence 68999999999999999999999999999999999999999864
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1e-07 Score=102.33 Aligned_cols=53 Identities=25% Similarity=0.406 Sum_probs=45.9
Q ss_pred EEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCCCC
Q 041113 924 FIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 924 ~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~~ 981 (983)
+++|...|+ ++||||+||+++++..|..+++.|+++ |+||++|+||||+|+.+
T Consensus 14 ~l~y~~~g~-----g~pvvllHG~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~ 67 (277)
T 1brt_A 14 DLYYEDHGT-----GQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQP 67 (277)
T ss_dssp EEEEEEECS-----SSEEEEECCTTCCGGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC
T ss_pred EEEEEEcCC-----CCeEEEECCCCCcHHHHHHHHHHHhhCCCEEEEeCCCCCCCCCCC
Confidence 344455564 678999999999999999999999875 99999999999999875
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-07 Score=101.35 Aligned_cols=54 Identities=28% Similarity=0.383 Sum_probs=45.8
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~~ 981 (983)
++|...|+.. +|+|||+||+++++..|..+++.|+++ |+||++|+||||+|+.+
T Consensus 11 l~y~~~g~~~---~~~vvllHG~~~~~~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~ 65 (275)
T 1a88_A 11 IFYKDWGPRD---GLPVVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQP 65 (275)
T ss_dssp EEEEEESCTT---SCEEEEECCTTCCGGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC
T ss_pred EEEEEcCCCC---CceEEEECCCCCchhhHHHHHHHHHHCCceEEEEcCCcCCCCCCC
Confidence 3445556433 789999999999999999999999876 99999999999999865
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-07 Score=101.35 Aligned_cols=52 Identities=27% Similarity=0.456 Sum_probs=45.3
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~~ 981 (983)
++|...|+ +|+|||+||+++++..|..+++.|+++ |+||++|+||||+|+.+
T Consensus 11 l~y~~~g~-----~~~vvllHG~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~ 63 (273)
T 1a8s_A 11 IYYKDWGS-----GQPIVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRSSQP 63 (273)
T ss_dssp EEEEEESC-----SSEEEEECCTTCCGGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC
T ss_pred EEEEEcCC-----CCEEEEECCCCCcHHHHhhHHhhHhhCCcEEEEECCCCCCCCCCC
Confidence 34455564 689999999999999999999999876 99999999999999865
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-07 Score=100.45 Aligned_cols=52 Identities=35% Similarity=0.544 Sum_probs=45.1
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~~ 981 (983)
++|...|+ +|+|||+||+++++..|..+++.|.+. |+||++|+||||+|+.+
T Consensus 11 l~y~~~g~-----g~~vvllHG~~~~~~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~ 63 (274)
T 1a8q_A 11 IFYKDWGQ-----GRPVVFIHGWPLNGDAWQDQLKAVVDAGYRGIAHDRRGHGHSTPV 63 (274)
T ss_dssp EEEEEECS-----SSEEEEECCTTCCGGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC
T ss_pred EEEEecCC-----CceEEEECCCcchHHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCC
Confidence 34455564 689999999999999999999999876 99999999999999865
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=98.45 E-value=9.8e-08 Score=103.57 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=44.3
Q ss_pred EeecCCccCCCCceEEEeCCCC---CChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 927 VQEIGQRIDIQDNILLFLHGFL---GTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 927 ~~~~g~~~~~~~~~lv~lHG~~---~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
|...|++. +|+|||+||++ .++..|..+++.|+++|+||++|+||||.|+.+.
T Consensus 28 y~~~G~g~---~~~vvllHG~~pg~~~~~~w~~~~~~L~~~~~via~Dl~G~G~S~~~~ 83 (291)
T 2wue_A 28 YHEAGVGN---DQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRA 83 (291)
T ss_dssp EEEECTTC---SSEEEEECCCCTTCCHHHHTTTTHHHHTTTSEEEEECCTTSTTSCCCS
T ss_pred EEecCCCC---CCcEEEECCCCCccchHHHHHHHHHHHHhcCEEEEECCCCCCCCCCCC
Confidence 34555421 35999999998 8888999999999988999999999999998763
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.7e-07 Score=100.49 Aligned_cols=53 Identities=23% Similarity=0.435 Sum_probs=45.8
Q ss_pred EEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCCCC
Q 041113 924 FIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 924 ~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~~ 981 (983)
+++|...|+ ++||||+||+++++..|.++++.|+++ |+||++|+||||.|+.+
T Consensus 14 ~l~y~~~g~-----~~pvvllHG~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~ 67 (279)
T 1hkh_A 14 ELYYEDQGS-----GQPVVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSKV 67 (279)
T ss_dssp EEEEEEESS-----SEEEEEECCTTCCGGGGHHHHHHHHHTTEEEEEECCTTSTTSCCC
T ss_pred EEEEEecCC-----CCcEEEEcCCCchhhHHhhhHHHHHhCCcEEEEeCCCCCCCCCCC
Confidence 344555564 678999999999999999999999875 99999999999999865
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.6e-07 Score=99.43 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=45.6
Q ss_pred eecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 928 QEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 928 ~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
...|+.. +|+|||+||+++++..|..+++.|+++|+|+++|+||||.|+.+
T Consensus 14 ~~~g~~~---~~~vv~lHG~~~~~~~~~~~~~~L~~~~~v~~~D~~G~G~S~~~ 64 (264)
T 3ibt_A 14 SESGDPH---APTLFLLSGWCQDHRLFKNLAPLLARDFHVICPDWRGHDAKQTD 64 (264)
T ss_dssp EEESCSS---SCEEEEECCTTCCGGGGTTHHHHHTTTSEEEEECCTTCSTTCCC
T ss_pred EEeCCCC---CCeEEEEcCCCCcHhHHHHHHHHHHhcCcEEEEccccCCCCCCC
Confidence 4555533 78999999999999999999999998999999999999999875
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.8e-07 Score=100.76 Aligned_cols=45 Identities=24% Similarity=0.458 Sum_probs=40.3
Q ss_pred Cce-EEEeCCCC---CChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 938 DNI-LLFLHGFL---GTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 938 ~~~-lv~lHG~~---~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
++| |||+||++ +++..|..+++.|+++|+||++|+||||+|+.+.
T Consensus 28 g~p~vvllHG~~~~~~~~~~~~~~~~~L~~~~~vi~~D~~G~G~S~~~~ 76 (285)
T 1c4x_A 28 QSPAVVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFGQSEYPE 76 (285)
T ss_dssp TSCEEEEECCCSTTCCHHHHHGGGHHHHHTTSEEEEECCTTSTTSCCCS
T ss_pred CCCEEEEEeCCCCCCcchhhHHHHHHHHhhCcEEEEecCCCCCCCCCCC
Confidence 455 99999998 7888999999999988999999999999998653
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=98.39 E-value=2.3e-07 Score=98.96 Aligned_cols=44 Identities=30% Similarity=0.864 Sum_probs=40.0
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhh-CCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVS-GSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~-~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||+++++..|.++++.|+ ++|+||++|+||||.|+.+
T Consensus 16 ~~~vvllHG~~~~~~~w~~~~~~L~~~~~~vi~~Dl~GhG~S~~~ 60 (264)
T 1r3d_A 16 TPLVVLVHGLLGSGADWQPVLSHLARTQCAALTLDLPGHGTNPER 60 (264)
T ss_dssp BCEEEEECCTTCCGGGGHHHHHHHTTSSCEEEEECCTTCSSCC--
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccCceEEEecCCCCCCCCCC
Confidence 3899999999999999999999998 7899999999999999864
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.9e-07 Score=99.40 Aligned_cols=64 Identities=27% Similarity=0.373 Sum_probs=52.1
Q ss_pred eeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 909 VLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
++.+.+.+++..++| ...|+ +|+|||+||+++++..|..+++.|+++|+|+++|+||||.|+.+
T Consensus 10 ~~~~~~~~~g~~l~~----~~~g~-----~~~vv~lHG~~~~~~~~~~~~~~L~~~~~vi~~D~~G~G~S~~~ 73 (301)
T 3kda_A 10 FESAYREVDGVKLHY----VKGGQ-----GPLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPP 73 (301)
T ss_dssp CEEEEEEETTEEEEE----EEEES-----SSEEEEECCTTCCGGGGTTTHHHHTTTSEEEEECCTTSTTCCCC
T ss_pred cceEEEeeCCeEEEE----EEcCC-----CCEEEEECCCCcchhHHHHHHHHHHhcCeEEEEcCCCCCCCCCC
Confidence 455555565544333 44554 78999999999999999999999998899999999999999865
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.1e-07 Score=98.21 Aligned_cols=67 Identities=25% Similarity=0.281 Sum_probs=50.1
Q ss_pred EEEEEEcccCceeEEEEeecCCccCCCCc-eEEEeCCCC---CChhhHHHHH-HHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 911 RYQLNVNSKDFCSFIKVQEIGQRIDIQDN-ILLFLHGFL---GTGEEWIPIM-KAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~lv~lHG~~---~~~~~w~~~~-~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
.+.++++..+...+++|...|+ ++ +|||+||++ .++..|..++ +.|+++|+||++|+||||.|+.+.
T Consensus 13 ~~~~~~~~~g~~~~l~y~~~g~-----g~~~vvllHG~~~~~~~~~~~~~~~~~~l~~~~~vi~~D~~G~G~S~~~~ 84 (289)
T 1u2e_A 13 SRFLNVEEAGKTLRIHFNDCGQ-----GDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVV 84 (289)
T ss_dssp EEEEEEEETTEEEEEEEEEECC-----CSSEEEEECCCSTTCCHHHHTTTTHHHHHHTTCEEEEECCTTSTTSCCCC
T ss_pred ceEEEEcCCCcEEEEEEeccCC-----CCceEEEECCCCcccchhHHHHHhhhHHHhcCCeEEEEcCCCCCCCCCCC
Confidence 4455555223112344455665 45 999999998 7778899998 999988999999999999998753
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=98.37 E-value=3.3e-07 Score=99.60 Aligned_cols=61 Identities=18% Similarity=0.355 Sum_probs=48.5
Q ss_pred eEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCC---CChhhHHHHHHHhhCCCEEEEEcCCCCCCCC
Q 041113 910 LRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFL---GTGEEWIPIMKAVSGSARCISIDLPGHGGSK 979 (983)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~---~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~ 979 (983)
..+.+.+++. +++|...|+ +|+|||+||++ .+...|..+++.|+++|+||++|+||||+|+
T Consensus 17 ~~~~~~~~g~----~l~y~~~g~-----g~~vvllHG~~~~~~~~~~~~~~~~~L~~~~~vi~~Dl~G~G~S~ 80 (296)
T 1j1i_A 17 VERFVNAGGV----ETRYLEAGK-----GQPVILIHGGGAGAESEGNWRNVIPILARHYRVIAMDMLGFGKTA 80 (296)
T ss_dssp EEEEEEETTE----EEEEEEECC-----SSEEEEECCCSTTCCHHHHHTTTHHHHTTTSEEEEECCTTSTTSC
T ss_pred cceEEEECCE----EEEEEecCC-----CCeEEEECCCCCCcchHHHHHHHHHHHhhcCEEEEECCCCCCCCC
Confidence 3444555433 334455665 68999999998 7888999999999988999999999999998
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=98.37 E-value=3.3e-07 Score=98.95 Aligned_cols=65 Identities=29% Similarity=0.383 Sum_probs=53.0
Q ss_pred eeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 909 VLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
.+.+.+.+++..++| ...|+ +|+|||+||++++...|..+++.|.++|+|+++|+||||.|+.+.
T Consensus 13 ~~~~~~~~~g~~l~~----~~~g~-----~~~vv~lHG~~~~~~~~~~~~~~l~~~~~v~~~D~~G~G~S~~~~ 77 (306)
T 3r40_A 13 FGSEWINTSSGRIFA----RVGGD-----GPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPE 77 (306)
T ss_dssp CEEEEECCTTCCEEE----EEEEC-----SSEEEEECCTTCCGGGGGGTHHHHHTTSEEEEECCTTSTTSCCCC
T ss_pred CceEEEEeCCEEEEE----EEcCC-----CCeEEEECCCCCCHHHHHHHHHHhccCCeEEEeCCCCCCCCCCCC
Confidence 555666555554444 44454 789999999999999999999999999999999999999998764
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=98.36 E-value=4.1e-07 Score=96.05 Aligned_cols=64 Identities=25% Similarity=0.415 Sum_probs=48.6
Q ss_pred eEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCC-hhhHHHHHHHhhCC-CEEEEEcCCCCCCCCCC
Q 041113 910 LRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGT-GEEWIPIMKAVSGS-ARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~-~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~~ 981 (983)
+...+.+++..++| ...|++ .++|||+||++++ ...|..+++.|.++ |+|+++|+||||.|+.+
T Consensus 3 ~~~~~~~~g~~l~~----~~~g~~----~~~vvllHG~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~ 68 (254)
T 2ocg_A 3 TSAKVAVNGVQLHY----QQTGEG----DHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPP 68 (254)
T ss_dssp EEEEEEETTEEEEE----EEEECC----SEEEEEECCTTCCHHHHCHHHHHHSCTTTEEEEEECCTTSTTCCSS
T ss_pred ceeEEEECCEEEEE----EEecCC----CCeEEEECCCCCCCccchHHHHHHHhhCCCeEEEECCCCCCCCCCC
Confidence 44555554433333 444542 3689999999999 77899999999887 99999999999999764
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.8e-07 Score=101.99 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=48.6
Q ss_pred eEEEEEEcccCceeEEEEeecCCccC-CCCceEEEeCCCCCChhhHHHHHHHhh--CCCEEEEEcCCCCCCCCC
Q 041113 910 LRYQLNVNSKDFCSFIKVQEIGQRID-IQDNILLFLHGFLGTGEEWIPIMKAVS--GSARCISIDLPGHGGSKM 980 (983)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~lv~lHG~~~~~~~w~~~~~~l~--~~~~vi~~Dl~G~G~S~~ 980 (983)
+...+.+++..++| ...|+... ..++|||||||+++++..|..++..|. .+|+||++|+||||+|++
T Consensus 29 ~~~~v~~~g~~l~y----~~~G~~~~~~~g~plvllHG~~~~~~~w~~~~~~l~~~~~~~Via~D~rG~G~S~~ 98 (330)
T 3nwo_A 29 SSRTVPFGDHETWV----QVTTPENAQPHALPLIVLHGGPGMAHNYVANIAALADETGRTVIHYDQVGCGNSTH 98 (330)
T ss_dssp CEEEEEETTEEEEE----EEECCSSCCTTCCCEEEECCTTTCCSGGGGGGGGHHHHHTCCEEEECCTTSTTSCC
T ss_pred cceeEeecCcEEEE----EEecCccCCCCCCcEEEECCCCCCchhHHHHHHHhccccCcEEEEECCCCCCCCCC
Confidence 44555555443333 44443110 013489999999999999999999887 479999999999999986
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2e-07 Score=99.72 Aligned_cols=44 Identities=25% Similarity=0.436 Sum_probs=41.4
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||+++++..|..+++.|+++|+||++|+||||.|+.+
T Consensus 20 ~~~vvllHG~~~~~~~w~~~~~~L~~~~~vi~~Dl~G~G~S~~~ 63 (271)
T 1wom_A 20 KASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLR 63 (271)
T ss_dssp SSEEEEECCTTCCGGGGTTTGGGGTTTSEEEECCCSCCSSSCCT
T ss_pred CCcEEEEcCCCCchhhHHHHHHHHHhcCeEEEECCCCCCCCCCC
Confidence 47999999999999999999999998999999999999999864
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.6e-07 Score=98.13 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=52.6
Q ss_pred eeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 909 VLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
.+++.+.+.+..++ |...|+ +|+|||+||+++++..|..+++.|+++|+|+++|+||||.|+.+
T Consensus 3 ~~~~~~~~~~~~~~----y~~~g~-----~~~vv~~HG~~~~~~~~~~~~~~L~~~~~vi~~d~~G~G~s~~~ 66 (278)
T 3oos_A 3 WTTNIIKTPRGKFE----YFLKGE-----GPPLCVTHLYSEYNDNGNTFANPFTDHYSVYLVNLKGCGNSDSA 66 (278)
T ss_dssp CEEEEEEETTEEEE----EEEECS-----SSEEEECCSSEECCTTCCTTTGGGGGTSEEEEECCTTSTTSCCC
T ss_pred cccCcEecCCceEE----EEecCC-----CCeEEEEcCCCcchHHHHHHHHHhhcCceEEEEcCCCCCCCCCC
Confidence 34556666554333 355665 78999999999999999999999999999999999999999875
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=98.30 E-value=9.1e-07 Score=100.18 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=52.0
Q ss_pred eeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhC----------CCEEEEEcCCCCCCC
Q 041113 909 VLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSG----------SARCISIDLPGHGGS 978 (983)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~----------~~~vi~~Dl~G~G~S 978 (983)
.....+.+++..++| .....+.+. ++||||+|||+++...|..+++.|.+ .|+||++|+||||.|
T Consensus 68 ~~~~~~~i~g~~i~~--~~~~~~~~~---~~plll~HG~~~s~~~~~~~~~~L~~~~~~~~~~~~~~~vi~~dl~G~G~S 142 (388)
T 4i19_A 68 YPQFTTEIDGATIHF--LHVRSPEPD---ATPMVITHGWPGTPVEFLDIIGPLTDPRAHGGDPADAFHLVIPSLPGFGLS 142 (388)
T ss_dssp SCEEEEEETTEEEEE--EEECCSSTT---CEEEEEECCTTCCGGGGHHHHHHHHCGGGGTSCGGGCEEEEEECCTTSGGG
T ss_pred CCcEEEEECCeEEEE--EEccCCCCC---CCeEEEECCCCCCHHHHHHHHHHHhCcccccCCCCCCeEEEEEcCCCCCCC
Confidence 344445555444443 222222222 78999999999999999999999998 899999999999999
Q ss_pred CCCC
Q 041113 979 KMQN 982 (983)
Q Consensus 979 ~~~~ 982 (983)
+.+.
T Consensus 143 ~~~~ 146 (388)
T 4i19_A 143 GPLK 146 (388)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8764
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=98.29 E-value=5.6e-07 Score=96.84 Aligned_cols=67 Identities=30% Similarity=0.424 Sum_probs=53.3
Q ss_pred eeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 909 VLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
.+...+.+++..+ ++...|++. +|+|||+||++++...|..+++.|+++|+|+++|+||||.|+.+.
T Consensus 10 ~~~~~~~~~g~~l----~~~~~g~~~---~~~vl~lHG~~~~~~~~~~~~~~l~~~~~v~~~d~~G~G~s~~~~ 76 (299)
T 3g9x_A 10 FDPHYVEVLGERM----HYVDVGPRD---GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD 76 (299)
T ss_dssp CCCEEEEETTEEE----EEEEESCSS---SCCEEEECCTTCCGGGGTTTHHHHTTTSCEEEECCTTSTTSCCCC
T ss_pred cceeeeeeCCeEE----EEEecCCCC---CCEEEEECCCCccHHHHHHHHHHHccCCEEEeeCCCCCCCCCCCC
Confidence 4455555654433 335556544 789999999999999999999999989999999999999998764
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-06 Score=93.10 Aligned_cols=67 Identities=24% Similarity=0.429 Sum_probs=53.3
Q ss_pred eeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCCCCC
Q 041113 909 VLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~~~ 982 (983)
++...+.+++..++| ...|++. +|+|||+||++++...|..+++.|.++ |+|+++|+||||.|+.+.
T Consensus 4 ~~~~~~~~~g~~l~~----~~~g~~~---~~~vv~~hG~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~ 71 (286)
T 3qit_A 4 MEEKFLEFGGNQICL----CSWGSPE---HPVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLE 71 (286)
T ss_dssp CEEEEEEETTEEEEE----EEESCTT---SCEEEEECCTTCCGGGGHHHHHHHHHTTCEEEEECCTTSTTSCCCS
T ss_pred hhhheeecCCceEEE----eecCCCC---CCEEEEECCCCcccchHHHHHHHhhhcCeEEEEECCCCCCCCCCCC
Confidence 456666665544433 4445433 789999999999999999999999887 999999999999998754
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=98.27 E-value=6.9e-07 Score=94.49 Aligned_cols=60 Identities=23% Similarity=0.351 Sum_probs=49.4
Q ss_pred EEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhC--CCEEEEEcCCCCCCCCCCC
Q 041113 914 LNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSG--SARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 914 ~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~--~~~vi~~Dl~G~G~S~~~~ 982 (983)
+++++..++| ...|+ +|+|||+||+++++..|..+++.|.+ +|+|+++|+||||.|+.+.
T Consensus 6 ~~~~g~~l~y----~~~g~-----~~~vv~lhG~~~~~~~~~~~~~~l~~~~g~~v~~~d~~G~G~s~~~~ 67 (272)
T 3fsg_A 6 EYLTRSNISY----FSIGS-----GTPIIFLHGLSLDKQSTCLFFEPLSNVGQYQRIYLDLPGMGNSDPIS 67 (272)
T ss_dssp CEECTTCCEE----EEECC-----SSEEEEECCTTCCHHHHHHHHTTSTTSTTSEEEEECCTTSTTCCCCS
T ss_pred EEecCCeEEE----EEcCC-----CCeEEEEeCCCCcHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCC
Confidence 3445554444 44554 78999999999999999999999987 7999999999999998764
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-06 Score=99.98 Aligned_cols=45 Identities=24% Similarity=0.315 Sum_probs=41.5
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-------CCEEEEEcCCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-------SARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-------~~~vi~~Dl~G~G~S~~~~ 982 (983)
++||||+|||+++...|..+++.|++ .|+||++|+||||.|+.+.
T Consensus 109 ~~pllllHG~~~s~~~~~~~~~~L~~~~~~~~~gf~vv~~DlpG~G~S~~~~ 160 (408)
T 3g02_A 109 AVPIALLHGWPGSFVEFYPILQLFREEYTPETLPFHLVVPSLPGYTFSSGPP 160 (408)
T ss_dssp CEEEEEECCSSCCGGGGHHHHHHHHHHCCTTTCCEEEEEECCTTSTTSCCSC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhcccccccCceEEEEECCCCCCCCCCCC
Confidence 78999999999999999999999986 3799999999999998763
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=98.26 E-value=1e-06 Score=92.71 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=45.2
Q ss_pred EEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 926 KVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 926 ~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|...|+ +|+|||+||++++...|..+++.|+++|+|+++|+||||.|+.+
T Consensus 16 ~~~~~g~-----~~~vv~lHG~~~~~~~~~~~~~~l~~~~~vi~~d~~G~G~S~~~ 66 (262)
T 3r0v_A 16 AFERSGS-----GPPVVLVGGALSTRAGGAPLAERLAPHFTVICYDRRGRGDSGDT 66 (262)
T ss_dssp EEEEEEC-----SSEEEEECCTTCCGGGGHHHHHHHTTTSEEEEECCTTSTTCCCC
T ss_pred EEEEcCC-----CCcEEEECCCCcChHHHHHHHHHHhcCcEEEEEecCCCcCCCCC
Confidence 3445554 68999999999999999999999998899999999999999865
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=98.23 E-value=7.3e-07 Score=95.82 Aligned_cols=62 Identities=26% Similarity=0.414 Sum_probs=50.2
Q ss_pred EEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 911 RYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
.+.+++++.. ++|...|+ +|+|||+||+++++..|..+++.|+++|+|+++|+||||.|+.+
T Consensus 10 ~~~~~~~g~~----l~~~~~g~-----~~~vv~lHG~~~~~~~~~~~~~~l~~~~~vi~~D~~G~G~S~~~ 71 (297)
T 2qvb_A 10 PKYLEIAGKR----MAYIDEGK-----GDAIVFQHGNPTSSYLWRNIMPHLEGLGRLVACDLIGMGASDKL 71 (297)
T ss_dssp CEEEEETTEE----EEEEEESS-----SSEEEEECCTTCCGGGGTTTGGGGTTSSEEEEECCTTSTTSCCC
T ss_pred ceEEEECCEE----EEEEecCC-----CCeEEEECCCCchHHHHHHHHHHHhhcCeEEEEcCCCCCCCCCC
Confidence 3444454433 33455565 68999999999999999999999998899999999999999865
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=98.22 E-value=9.4e-07 Score=95.44 Aligned_cols=65 Identities=25% Similarity=0.386 Sum_probs=51.9
Q ss_pred eeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHH-hhCCCEEEEEcCCCCCCCCCCC
Q 041113 909 VLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKA-VSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~-l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
.+...+.+++..++ |...|+ +|+|||+||++++...|..+++. +.++|+|+++|+||||.|+.+.
T Consensus 9 ~~~~~~~~~g~~l~----~~~~g~-----~~~vv~~HG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~S~~~~ 74 (309)
T 3u1t_A 9 FAKRTVEVEGATIA----YVDEGS-----GQPVLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGMGDSAKPD 74 (309)
T ss_dssp CCCEEEEETTEEEE----EEEEEC-----SSEEEEECCTTCCGGGGTTTHHHHHHTTCEEEEECCTTSTTSCCCS
T ss_pred ccceEEEECCeEEE----EEEcCC-----CCEEEEECCCcchhhhHHHHHHHHHhCCCEEEEEccCCCCCCCCCC
Confidence 44555666544333 355565 68999999999999999999998 7788999999999999998764
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.8e-06 Score=94.29 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=36.1
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCC-CCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGH-GGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~-G~S~~~ 981 (983)
+|+|||+|||++++..|..+++.|++ +|+||++|+||| |.|+.+
T Consensus 35 ~~~VvllHG~g~~~~~~~~~~~~L~~~G~~Vi~~D~rGh~G~S~~~ 80 (305)
T 1tht_A 35 NNTILIASGFARRMDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGS 80 (305)
T ss_dssp SCEEEEECTTCGGGGGGHHHHHHHHTTTCCEEEECCCBCC------
T ss_pred CCEEEEecCCccCchHHHHHHHHHHHCCCEEEEeeCCCCCCCCCCc
Confidence 68999999999999999999999986 599999999999 999753
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.9e-06 Score=90.87 Aligned_cols=44 Identities=20% Similarity=0.457 Sum_probs=40.1
Q ss_pred CceEEEeCCCCCC--hhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGT--GEEWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~--~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||++++ ...|..+++.|++ .|+|+++|+||||.|+.+
T Consensus 27 ~p~vvl~HG~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~ 73 (251)
T 2wtm_A 27 CPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGK 73 (251)
T ss_dssp EEEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTSSSC
T ss_pred CCEEEEEcCCCcccccccHHHHHHHHHHCCCEEEEecCCCCCCCCCc
Confidence 6889999999999 8999999999976 599999999999999753
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.4e-06 Score=91.21 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=42.0
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~~~ 982 (983)
+|+|||+||++++...|..+++.|.++ |+|+++|+||||.|+.+.
T Consensus 46 ~p~vv~~hG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~ 91 (315)
T 4f0j_A 46 GRTILLMHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPA 91 (315)
T ss_dssp SCEEEEECCTTCCGGGGHHHHHHHHHTTCEEEEECCTTSTTSCCCS
T ss_pred CCeEEEEcCCCCcchHHHHHHHHHHHCCCeEEEeecCCCCCCCCCC
Confidence 799999999999999999999999885 999999999999998653
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=98.19 E-value=9.9e-07 Score=95.17 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=43.5
Q ss_pred eeEEEEEEcccCceeEEEEeecCCccCCCC-ceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 909 VLRYQLNVNSKDFCSFIKVQEIGQRIDIQD-NILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
++...+.+++..+ +|...|++. + ++|||+||+++++..|...+..+.+ +|+||++|+||||+|+.+
T Consensus 5 ~~~~~~~~~g~~l----~~~~~g~~~---~~~~vvllHG~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~ 72 (293)
T 1mtz_A 5 CIENYAKVNGIYI----YYKLCKAPE---EKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSEEP 72 (293)
T ss_dssp CEEEEEEETTEEE----EEEEECCSS---CSEEEEEECCTTTCCSGGGGGGGGGGGGTEEEEEECCTTSTTSCCC
T ss_pred hcceEEEECCEEE----EEEEECCCC---CCCeEEEEeCCCCcchhHHHHHHHHHhcCcEEEEecCCCCccCCCC
Confidence 3445555554333 334445422 3 7999999987666555444444444 599999999999999875
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-06 Score=91.97 Aligned_cols=42 Identities=24% Similarity=0.432 Sum_probs=38.7
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~ 979 (983)
+|+|||+|||++++..|..+++.|++ +|+||++|+||||.|.
T Consensus 16 ~~~vvllHG~~~~~~~~~~~~~~L~~~g~~vi~~D~~GhG~s~ 58 (247)
T 1tqh_A 16 ERAVLLLHGFTGNSADVRMLGRFLESKGYTCHAPIYKGHGVPP 58 (247)
T ss_dssp SCEEEEECCTTCCTHHHHHHHHHHHHTTCEEEECCCTTSSSCH
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHCCCEEEecccCCCCCCH
Confidence 57999999999999999999999975 5999999999999774
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.8e-06 Score=91.66 Aligned_cols=64 Identities=28% Similarity=0.424 Sum_probs=49.9
Q ss_pred eEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHH-hhCCCEEEEEcCCCCCCCCCC
Q 041113 910 LRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKA-VSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~-l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+...+.+.+..++ |...+.. +|+|||+||+++++..|..+++. ++++|+|+++|+||||.|+.+
T Consensus 4 ~~~~~~~~~~~~~----~~~~~~~----~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~ 68 (279)
T 4g9e_A 4 NYHELETSHGRIA----VRESEGE----GAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDA 68 (279)
T ss_dssp EEEEEEETTEEEE----EEECCCC----EEEEEEECCTTCCGGGGHHHHHSHHHHHEEEEEECCTTSTTSCCC
T ss_pred EEEEEEcCCceEE----EEecCCC----CCeEEEECCCCCchhHHHHHHhHHHhcCCeEEeecCCCCCCCCCC
Confidence 4455555554333 3444432 68999999999999999999998 677899999999999999874
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.4e-06 Score=93.94 Aligned_cols=51 Identities=31% Similarity=0.436 Sum_probs=45.5
Q ss_pred EEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 926 KVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 926 ~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|...|+ +|+|||+||++++...|..+++.|+++|+|+++|+||||.|+.+
T Consensus 22 ~~~~~g~-----~~~vv~lHG~~~~~~~~~~~~~~L~~~~~vi~~D~~G~G~S~~~ 72 (302)
T 1mj5_A 22 AYIDEGT-----GDPILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKL 72 (302)
T ss_dssp EEEEESC-----SSEEEEECCTTCCGGGGTTTGGGGTTSSEEEEECCTTSTTSCCC
T ss_pred EEEEcCC-----CCEEEEECCCCCchhhhHHHHHHhccCCeEEEEcCCCCCCCCCC
Confidence 3455565 68999999999999999999999998999999999999999865
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=98.14 E-value=5.6e-06 Score=88.82 Aligned_cols=54 Identities=13% Similarity=0.128 Sum_probs=42.9
Q ss_pred EEeecCCccCCCCceEEEeCCCCCChhh-HHH-----HHHHhhCCCEEEEEcCCCCCCCCC
Q 041113 926 KVQEIGQRIDIQDNILLFLHGFLGTGEE-WIP-----IMKAVSGSARCISIDLPGHGGSKM 980 (983)
Q Consensus 926 ~~~~~g~~~~~~~~~lv~lHG~~~~~~~-w~~-----~~~~l~~~~~vi~~Dl~G~G~S~~ 980 (983)
+|...|++. .++|+|||+||++++... |.. +++.|+++|+|+++|+||||.|..
T Consensus 24 ~y~~~G~~~-~~~p~vvllHG~~~~~~~~~~~~~~~~~~~~L~~~~~vi~~D~~G~G~s~~ 83 (286)
T 2qmq_A 24 TFTVYGTPK-PKRPAIFTYHDVGLNYKSCFQPLFRFGDMQEIIQNFVRVHVDAPGMEEGAP 83 (286)
T ss_dssp EEEEESCCC-TTCCEEEEECCTTCCHHHHHHHHHTSHHHHHHHTTSCEEEEECTTTSTTCC
T ss_pred EEEeccCCC-CCCCeEEEeCCCCCCchhhhhhhhhhchhHHHhcCCCEEEecCCCCCCCCC
Confidence 345555421 127899999999999985 776 889999899999999999998764
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.7e-06 Score=93.25 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=39.0
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~ 979 (983)
++.|||+|||++++..|+.+++.|++. |+|+++|+||||.|+
T Consensus 51 ~~~VlllHG~~~s~~~~~~la~~La~~Gy~Via~Dl~GhG~S~ 93 (281)
T 4fbl_A 51 RIGVLVSHGFTGSPQSMRFLAEGFARAGYTVATPRLTGHGTTP 93 (281)
T ss_dssp SEEEEEECCTTCCGGGGHHHHHHHHHTTCEEEECCCTTSSSCH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
Confidence 567999999999999999999999875 999999999999985
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=97.39 E-value=3.7e-07 Score=98.37 Aligned_cols=64 Identities=25% Similarity=0.362 Sum_probs=51.4
Q ss_pred eeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 909 VLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
++.+.+++++..++| ...|+ +|+|||+||+++++..|..+++.|+++|+|+++|+||||.|+.+
T Consensus 5 ~~~~~~~~~g~~~~~----~~~g~-----~p~vv~lHG~~~~~~~~~~~~~~l~~g~~v~~~D~~G~G~s~~~ 68 (304)
T 3b12_A 5 FERRLVDVGDVTINC----VVGGS-----GPALLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKP 68 (304)
Confidence 344555554444443 44554 78999999999999999999999998899999999999999875
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.7e-06 Score=90.41 Aligned_cols=43 Identities=26% Similarity=0.494 Sum_probs=38.8
Q ss_pred CceEEEeCCC--CCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGF--LGTGEEWIPIMKAVSGSARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~--~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~ 980 (983)
+|+|||+||| +++...|..+++.|+++|+|+++|+||||.|+.
T Consensus 41 ~p~vv~lHG~G~~~~~~~~~~~~~~L~~~~~vi~~D~~G~G~S~~ 85 (292)
T 3l80_A 41 NPCFVFLSGAGFFSTADNFANIIDKLPDSIGILTIDAPNSGYSPV 85 (292)
T ss_dssp SSEEEEECCSSSCCHHHHTHHHHTTSCTTSEEEEECCTTSTTSCC
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHHhhcCeEEEEcCCCCCCCCC
Confidence 6899999955 666889999999999899999999999999983
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=8e-06 Score=86.54 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=51.0
Q ss_pred cccccceeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCC--hhhHHHHHHHhhCC-CEEEEEcCCCCCCCC
Q 041113 903 TSMEEQVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGT--GEEWIPIMKAVSGS-ARCISIDLPGHGGSK 979 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~--~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~ 979 (983)
....++++...+..++..++|. ........ +|+|||+||++++ ...|..+.+.|.+. |+|+++|+||||.|+
T Consensus 16 ~~~~~~~~~~~~~~~g~~l~~~--~~~p~~~~---~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~ 90 (270)
T 3pfb_A 16 NLYFQGMATITLERDGLQLVGT--REEPFGEI---YDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSD 90 (270)
T ss_dssp CCSCCEEEEEEEEETTEEEEEE--EEECSSSS---EEEEEEECCTTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTSS
T ss_pred ceeeccceEEEeccCCEEEEEE--EEcCCCCC---CCEEEEEcCCCCCccccHHHHHHHHHHhCCcEEEEEccccccCCC
Confidence 3334334455555444444443 23222222 6899999999988 67799999999765 999999999999998
Q ss_pred CC
Q 041113 980 MQ 981 (983)
Q Consensus 980 ~~ 981 (983)
.+
T Consensus 91 ~~ 92 (270)
T 3pfb_A 91 GK 92 (270)
T ss_dssp SC
T ss_pred CC
Confidence 64
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.2e-06 Score=93.21 Aligned_cols=44 Identities=27% Similarity=0.404 Sum_probs=40.9
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCC-CCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGH-GGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~-G~S~~~ 981 (983)
+|+|||+||+++++..|..+++.|+++|+|+++|+||| |.|..+
T Consensus 67 ~~~vv~lHG~~~~~~~~~~~~~~L~~g~~vi~~D~~G~gG~s~~~ 111 (306)
T 2r11_A 67 APPLVLLHGALFSSTMWYPNIADWSSKYRTYAVDIIGDKNKSIPE 111 (306)
T ss_dssp SCEEEEECCTTTCGGGGTTTHHHHHHHSEEEEECCTTSSSSCEEC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcCCEEEEecCCCCCCCCCCC
Confidence 78999999999999999999999988999999999999 888653
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.02 E-value=6.9e-06 Score=89.44 Aligned_cols=63 Identities=25% Similarity=0.480 Sum_probs=49.7
Q ss_pred eEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 910 LRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
..+.+.+++..++ +...|+ +|+|||+||++++...|..+++.|+++|+|+++|+||||.|+.+
T Consensus 49 ~~~~~~~~~~~~~----~~~~g~-----~p~vv~lhG~~~~~~~~~~~~~~L~~~~~v~~~D~~G~G~S~~~ 111 (314)
T 3kxp_A 49 ISRRVDIGRITLN----VREKGS-----GPLMLFFHGITSNSAVFEPLMIRLSDRFTTIAVDQRGHGLSDKP 111 (314)
T ss_dssp EEEEEECSSCEEE----EEEECC-----SSEEEEECCTTCCGGGGHHHHHTTTTTSEEEEECCTTSTTSCCC
T ss_pred ceeeEEECCEEEE----EEecCC-----CCEEEEECCCCCCHHHHHHHHHHHHcCCeEEEEeCCCcCCCCCC
Confidence 4444444443333 344555 68999999999999999999999998999999999999999744
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=6.9e-06 Score=91.67 Aligned_cols=45 Identities=29% Similarity=0.508 Sum_probs=41.5
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~~ 982 (983)
+|+|||+||++++...|..+++.|.+ +|+|+++|+||||.|+.+.
T Consensus 27 ~~~vv~~hG~~~~~~~~~~~~~~l~~~g~~vi~~d~~g~g~s~~~~ 72 (356)
T 2e3j_A 27 GPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYR 72 (356)
T ss_dssp SCEEEEECCTTCCGGGGTTTHHHHHHTTCEEEEECCTTSTTSCCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCC
Confidence 78999999999999999999999976 5999999999999998653
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.3e-05 Score=85.73 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=40.8
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||++++...|..+++.|.+ +|+|+++|+||||.|+.+
T Consensus 42 ~~~vv~~hG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~ 86 (303)
T 3pe6_A 42 KALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGE 86 (303)
T ss_dssp SEEEEEECCTTCCGGGGHHHHHHHHHTTEEEEEECCTTSTTSCSS
T ss_pred CeEEEEECCCCchhhHHHHHHHHHHhCCCcEEEeCCCCCCCCCCC
Confidence 67899999999999999999999987 599999999999999854
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=97.93 E-value=4e-06 Score=91.31 Aligned_cols=52 Identities=21% Similarity=0.260 Sum_probs=36.7
Q ss_pred EEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhh-CCCEEEEEcCCCCCCCCCC
Q 041113 926 KVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVS-GSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 926 ~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~-~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|...|++. ++||||+||++++...| .+...+. ++|+||++|+||||+|+.+
T Consensus 25 ~y~~~G~~~---g~pvvllHG~~~~~~~~-~~~~~~~~~~~~vi~~D~~G~G~S~~~ 77 (313)
T 1azw_A 25 YFEQCGNPH---GKPVVMLHGGPGGGCND-KMRRFHDPAKYRIVLFDQRGSGRSTPH 77 (313)
T ss_dssp EEEEEECTT---SEEEEEECSTTTTCCCG-GGGGGSCTTTEEEEEECCTTSTTSBST
T ss_pred EEEecCCCC---CCeEEEECCCCCccccH-HHHHhcCcCcceEEEECCCCCcCCCCC
Confidence 344455433 68999999998765332 2334443 5799999999999999864
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=97.93 E-value=9.3e-06 Score=87.08 Aligned_cols=55 Identities=24% Similarity=0.472 Sum_probs=45.7
Q ss_pred eEEEEeecCCccCCCCceEEEeCCCCCChhhHH-HHHHHh-hCCCEEEEEcCCCCCCCCCCC
Q 041113 923 SFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWI-PIMKAV-SGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 923 ~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~-~~~~~l-~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
.+++|...|+ +|+|||+||++++...|. .++..| +++|+|+++|+||||.|+.+.
T Consensus 33 ~~l~y~~~g~-----~~~vv~lHG~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~s~~~~ 89 (293)
T 3hss_A 33 INLAYDDNGT-----GDPVVFIAGRGGAGRTWHPHQVPAFLAAGYRCITFDNRGIGATENAE 89 (293)
T ss_dssp EEEEEEEECS-----SEEEEEECCTTCCGGGGTTTTHHHHHHTTEEEEEECCTTSGGGTTCC
T ss_pred ceEEEEEcCC-----CCEEEEECCCCCchhhcchhhhhhHhhcCCeEEEEccCCCCCCCCcc
Confidence 3455666675 789999999999999999 677776 667999999999999998653
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=1.3e-05 Score=94.65 Aligned_cols=53 Identities=23% Similarity=0.419 Sum_probs=46.0
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCCCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~~~ 982 (983)
++|...|+ +|+|||+||+++++..|..+++.|.++ |+|+++|+||||.|+.+.
T Consensus 250 l~~~~~g~-----~p~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~D~~G~G~S~~~~ 303 (555)
T 3i28_A 250 LHFVELGS-----GPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPP 303 (555)
T ss_dssp EEEEEECS-----SSEEEEECCTTCCGGGGTTHHHHHHHTTCEEEEECCTTSTTSCCCS
T ss_pred EEEEEcCC-----CCEEEEEeCCCCchhHHHHHHHHHHhCCCEEEEecCCCCCCCCCCC
Confidence 33455564 789999999999999999999999875 999999999999998753
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=97.90 E-value=4.2e-06 Score=93.43 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=43.4
Q ss_pred eEEEEeecCCccCCCCceEEEeCCCCCChhh-------------HHHHH---HHh-hCCCEEEEEcCCCCCCCC
Q 041113 923 SFIKVQEIGQRIDIQDNILLFLHGFLGTGEE-------------WIPIM---KAV-SGSARCISIDLPGHGGSK 979 (983)
Q Consensus 923 ~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~-------------w~~~~---~~l-~~~~~vi~~Dl~G~G~S~ 979 (983)
++++|...|+.....+|+|||+|||++++.. |+.++ ..| .++|+||++|+||||.|+
T Consensus 27 ~~i~y~~~g~~~~~~~p~vll~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~G~S~ 100 (377)
T 3i1i_A 27 VQMGYETYGTLNRERSNVILICHYFSATSHAAGKYTAHDEESGWWDGLIGPGKAIDTNQYFVICTDNLCNVQVK 100 (377)
T ss_dssp EEEEEEEESCCCTTCCCEEEEECCTTCCSCCSSCSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSCTT
T ss_pred eeEEEEeecccCCCCCCEEEEeccccCcchhccccccccccccchhhhcCCCCccccccEEEEEeccccccccc
Confidence 4556666664322225899999999999888 99888 555 467999999999998754
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=97.89 E-value=4.6e-06 Score=87.84 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=40.9
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~ 980 (983)
+|+|||+||+++++..|..+++.|+++|+|+++|+||||.|+.
T Consensus 20 ~p~vv~~HG~~~~~~~~~~~~~~l~~g~~v~~~D~~G~G~S~~ 62 (269)
T 4dnp_A 20 ERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSVNP 62 (269)
T ss_dssp SSEEEEECCTTCCGGGGTTTGGGGTTTCEEEEECCTTSTTSCG
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCcEEEEEcCCCCCCCCC
Confidence 5899999999999999999999998899999999999999965
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=97.89 E-value=4.6e-06 Score=88.44 Aligned_cols=44 Identities=23% Similarity=0.440 Sum_probs=41.5
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||++++...|..+++.|+++|+|+++|+||||.|+.+
T Consensus 28 ~~~vv~lHG~~~~~~~~~~~~~~l~~g~~v~~~d~~G~G~s~~~ 71 (282)
T 3qvm_A 28 EKTVLLAHGFGCDQNMWRFMLPELEKQFTVIVFDYVGSGQSDLE 71 (282)
T ss_dssp SCEEEEECCTTCCGGGGTTTHHHHHTTSEEEECCCTTSTTSCGG
T ss_pred CCeEEEECCCCCCcchHHHHHHHHhcCceEEEEecCCCCCCCCC
Confidence 48999999999999999999999999999999999999999864
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=9.5e-06 Score=85.68 Aligned_cols=44 Identities=18% Similarity=0.374 Sum_probs=41.5
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||++++...|..+++.|+++|+|+++|+||||.|..+
T Consensus 20 ~~~vv~~HG~~~~~~~~~~~~~~l~~~~~v~~~d~~G~G~s~~~ 63 (267)
T 3fla_A 20 RARLVCLPHAGGSASFFFPLAKALAPAVEVLAVQYPGRQDRRHE 63 (267)
T ss_dssp SEEEEEECCTTCCGGGGHHHHHHHTTTEEEEEECCTTSGGGTTS
T ss_pred CceEEEeCCCCCCchhHHHHHHHhccCcEEEEecCCCCCCCCCC
Confidence 78999999999999999999999998899999999999998754
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=97.86 E-value=1.1e-05 Score=93.40 Aligned_cols=54 Identities=24% Similarity=0.398 Sum_probs=46.6
Q ss_pred EEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHh-hCCCEEEEEcCCCCCCCCCCC
Q 041113 924 FIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAV-SGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 924 ~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l-~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
.++|...|+ +|+|||+||++++...|..+++.| ..+|+|+++|+||||.|+.+.
T Consensus 15 ~l~y~~~G~-----gp~VV~lHG~~~~~~~~~~l~~~La~~Gy~Vi~~D~rG~G~S~~~~ 69 (456)
T 3vdx_A 15 DLYYEDHGT-----GVPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPT 69 (456)
T ss_dssp EEEEEEESS-----SEEEEEECCTTCCGGGGTTHHHHHHHHTEEEEEECCTTSTTSCCCS
T ss_pred EEEEEEeCC-----CCEEEEECCCCCcHHHHHHHHHHHHHCCcEEEEECCCCCCCCCCCC
Confidence 444566665 789999999999999999999999 567999999999999998653
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.84 E-value=7e-06 Score=85.08 Aligned_cols=43 Identities=37% Similarity=0.460 Sum_probs=40.2
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||++++...|. ++..|.++|+|+++|+||||.|+.+
T Consensus 16 ~~~vv~~hG~~~~~~~~~-~~~~l~~g~~v~~~d~~g~g~s~~~ 58 (245)
T 3e0x_A 16 PNTLLFVHGSGCNLKIFG-ELEKYLEDYNCILLDLKGHGESKGQ 58 (245)
T ss_dssp SCEEEEECCTTCCGGGGT-TGGGGCTTSEEEEECCTTSTTCCSC
T ss_pred CCEEEEEeCCcccHHHHH-HHHHHHhCCEEEEecCCCCCCCCCC
Confidence 789999999999999999 8899988899999999999999843
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=7.1e-06 Score=87.96 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=41.0
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||++++...|..+++.|+++|+|+++|+||||.|..+
T Consensus 51 ~~~lvllHG~~~~~~~~~~l~~~L~~~~~v~~~D~~G~G~S~~~ 94 (280)
T 3qmv_A 51 PLRLVCFPYAGGTVSAFRGWQERLGDEVAVVPVQLPGRGLRLRE 94 (280)
T ss_dssp SEEEEEECCTTCCGGGGTTHHHHHCTTEEEEECCCTTSGGGTTS
T ss_pred CceEEEECCCCCChHHHHHHHHhcCCCceEEEEeCCCCCCCCCC
Confidence 37899999999999999999999998999999999999998654
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=2.9e-05 Score=85.51 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=40.9
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||++++...|..+++.|.+ +|+|+++|+||||.|+.+
T Consensus 60 ~p~vv~~HG~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~ 104 (342)
T 3hju_A 60 KALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGE 104 (342)
T ss_dssp SEEEEEECCTTCCGGGGHHHHHHHHTTTEEEEEECCTTSTTSCSS
T ss_pred CcEEEEECCCCcccchHHHHHHHHHhCCCeEEEEcCCCCcCCCCc
Confidence 67899999999999999999999988 599999999999999854
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=7.6e-06 Score=89.22 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=36.3
Q ss_pred EEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHh-hCCCEEEEEcCCCCCCCCCC
Q 041113 926 KVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAV-SGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 926 ~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l-~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|...|++. ++||||+||+++++..| .+...+ .++|+||++|+||||+|+.+
T Consensus 28 ~~~~~g~~~---g~~vvllHG~~~~~~~~-~~~~~~~~~~~~vi~~D~~G~G~S~~~ 80 (317)
T 1wm1_A 28 YWELSGNPN---GKPAVFIHGGPGGGISP-HHRQLFDPERYKVLLFDQRGCGRSRPH 80 (317)
T ss_dssp EEEEEECTT---SEEEEEECCTTTCCCCG-GGGGGSCTTTEEEEEECCTTSTTCBST
T ss_pred EEEEcCCCC---CCcEEEECCCCCcccch-hhhhhccccCCeEEEECCCCCCCCCCC
Confidence 344555433 68999999998765322 223334 35799999999999999764
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.83 E-value=2.2e-05 Score=86.26 Aligned_cols=42 Identities=29% Similarity=0.599 Sum_probs=39.5
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||+++++..|..++..| +|+|+++|+||||.|+.+
T Consensus 81 ~~~vv~~hG~~~~~~~~~~~~~~l--g~~Vi~~D~~G~G~S~~~ 122 (330)
T 3p2m_A 81 APRVIFLHGGGQNAHTWDTVIVGL--GEPALAVDLPGHGHSAWR 122 (330)
T ss_dssp CCSEEEECCTTCCGGGGHHHHHHS--CCCEEEECCTTSTTSCCC
T ss_pred CCeEEEECCCCCccchHHHHHHHc--CCeEEEEcCCCCCCCCCC
Confidence 689999999999999999999999 899999999999999854
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=8.5e-05 Score=82.19 Aligned_cols=122 Identities=19% Similarity=0.249 Sum_probs=92.1
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHHH----HHHHHHHHHHcCCCc--EEEEEcC--
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIKD----AEVIQEVRKKVGHRI--ELRVDAN-- 709 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~d----~~~v~~vr~~~g~~~--~l~vDaN-- 709 (983)
+++.+.++.+++.||..+.|+.+.. .+++.. ++.|++||+++|++. -+++.++
T Consensus 152 ~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~ 231 (349)
T 3hgj_A 152 QAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDW 231 (349)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCC
T ss_pred HHHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccc
Confidence 4566677777889999999998751 122222 678999999999885 4555665
Q ss_pred --CCCCHHHHHHHHhhcccCCCceeecCC------------C--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhh
Q 041113 710 --RNWTYQEALEFGFLIKDCDLQYIEEPV------------Q--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKY 773 (983)
Q Consensus 710 --~~~~~~~a~~~~~~l~~~~i~~iEeP~------------~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~ 773 (983)
++|+.++++++++.|++.++.||+-.. + +.+..+++++.+++||.+...+.+.. ....+
T Consensus 232 ~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e-----~a~~~ 306 (349)
T 3hgj_A 232 GEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPE-----QAETL 306 (349)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHH-----HHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHH-----HHHHH
Confidence 389999999999999999999999653 1 24456788888899999999988764 35555
Q ss_pred cCCC-ceEEEE
Q 041113 774 AHPG-IVAIVI 783 (983)
Q Consensus 774 ~~~~-~~~i~~ 783 (983)
++.| +|.|.+
T Consensus 307 l~~G~aD~V~i 317 (349)
T 3hgj_A 307 LQAGSADLVLL 317 (349)
T ss_dssp HHTTSCSEEEE
T ss_pred HHCCCceEEEe
Confidence 5555 788765
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=97.82 E-value=1.8e-05 Score=80.31 Aligned_cols=44 Identities=34% Similarity=0.572 Sum_probs=40.2
Q ss_pred CceEEEeCCCCCChhhHHH--HHHHhhCC-CEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIP--IMKAVSGS-ARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~--~~~~l~~~-~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||++++...|.. +.+.|.+. |+|+++|+||||.|+.+
T Consensus 32 ~~~vv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~ 78 (210)
T 1imj_A 32 RFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEA 78 (210)
T ss_dssp SCEEEECCCTTCCHHHHHHHTHHHHHHHTTCEEEEECCTTSGGGTTS
T ss_pred CceEEEECCCCCccceeecchhHHHHHHCCCeEEEecCCCCCCCCCC
Confidence 7899999999999999999 58888876 99999999999998765
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=97.76 E-value=8.8e-06 Score=88.18 Aligned_cols=44 Identities=11% Similarity=0.208 Sum_probs=40.8
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC---CEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS---ARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~---~~vi~~Dl~G~G~S~~~ 981 (983)
+++|||+||+++++..|..+++.|++. |+|+++|+||||.|..+
T Consensus 36 ~~~vvllHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~s~~~ 82 (302)
T 1pja_A 36 YKPVIVVHGLFDSSYSFRHLLEYINETHPGTVVTVLDLFDGRESLRP 82 (302)
T ss_dssp CCCEEEECCTTCCGGGGHHHHHHHHHHSTTCCEEECCSSCSGGGGSC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHhcCCCcEEEEeccCCCccchhh
Confidence 789999999999999999999999874 99999999999998754
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=97.68 E-value=3.4e-05 Score=80.08 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=39.9
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~ 980 (983)
+|+|||+||++++...|..+.+.|.+. |+|+++|+||||.|+.
T Consensus 22 ~~~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~ 65 (251)
T 3dkr_A 22 DTGVVLLHAYTGSPNDMNFMARALQRSGYGVYVPLFSGHGTVEP 65 (251)
T ss_dssp SEEEEEECCTTCCGGGGHHHHHHHHHTTCEEEECCCTTCSSSCT
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEecCCCCCCCCCh
Confidence 689999999999999999999999865 9999999999999954
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=97.66 E-value=7.6e-05 Score=78.50 Aligned_cols=44 Identities=20% Similarity=0.226 Sum_probs=37.1
Q ss_pred CceEEEeCCCCCChhhHHH--HHHHh-hCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIP--IMKAV-SGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~--~~~~l-~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||++++...|.. +...| ..+|+|+++|+||||.|+.+
T Consensus 37 ~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~ 83 (270)
T 3llc_A 37 RPTCIWLGGYRSDMTGTKALEMDDLAASLGVGAIRFDYSGHGASGGA 83 (270)
T ss_dssp SCEEEEECCTTCCTTSHHHHHHHHHHHHHTCEEEEECCTTSTTCCSC
T ss_pred CCeEEEECCCccccccchHHHHHHHHHhCCCcEEEeccccCCCCCCc
Confidence 6899999999999877654 66777 45799999999999999864
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=97.66 E-value=6e-05 Score=76.04 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=48.2
Q ss_pred eEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHH--HHHHhhCC-CEEEEEcCCCCCCC
Q 041113 910 LRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIP--IMKAVSGS-ARCISIDLPGHGGS 978 (983)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~--~~~~l~~~-~~vi~~Dl~G~G~S 978 (983)
+...++.++..++.++ +...|+ +|+|||+||++++...|.. +.+.|.+. |+|+++|+||||.|
T Consensus 5 ~~~~~~~~g~~l~~~~-~~~~~~-----~~~vv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s 70 (207)
T 3bdi_A 5 QEEFIDVNGTRVFQRK-MVTDSN-----RRSIALFHGYSFTSMDWDKADLFNNYSKIGYNVYAPDYPGFGRS 70 (207)
T ss_dssp EEEEEEETTEEEEEEE-ECCTTC-----CEEEEEECCTTCCGGGGGGGTHHHHHHTTTEEEEEECCTTSTTS
T ss_pred eeEEEeeCCcEEEEEE-EeccCC-----CCeEEEECCCCCCccccchHHHHHHHHhCCCeEEEEcCCccccc
Confidence 4444444443333211 345553 7899999999999999999 99999887 99999999999999
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.65 E-value=4.1e-05 Score=82.14 Aligned_cols=44 Identities=27% Similarity=0.496 Sum_probs=40.6
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
.|+|||+||++++...|..+.+.|.+ .|+|+++|+||||.|..+
T Consensus 28 ~p~vv~~HG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~g~s~~~ 72 (290)
T 3ksr_A 28 MPGVLFVHGWGGSQHHSLVRAREAVGLGCICMTFDLRGHEGYASM 72 (290)
T ss_dssp EEEEEEECCTTCCTTTTHHHHHHHHTTTCEEECCCCTTSGGGGGG
T ss_pred CcEEEEeCCCCCCcCcHHHHHHHHHHCCCEEEEeecCCCCCCCCC
Confidence 78999999999999999999999987 599999999999998653
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=3.3e-05 Score=86.07 Aligned_cols=43 Identities=14% Similarity=0.307 Sum_probs=38.9
Q ss_pred CceEEEeCCCCCChhhHHHHHH------HhhCC-CEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMK------AVSGS-ARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~------~l~~~-~~vi~~Dl~G~G~S~~ 980 (983)
+|+|||+||+++++..|..+.. .|++. |+|+++|+||||.|+.
T Consensus 58 ~~~vvl~HG~~~~~~~~~~~~~~~~~a~~l~~~G~~vi~~D~~G~G~S~~ 107 (377)
T 1k8q_A 58 RPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGNTWARR 107 (377)
T ss_dssp CCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTSTTSCE
T ss_pred CCeEEEECCCCCchhhhhcCCCcccHHHHHHHCCCCEEEecCCCCCCCCC
Confidence 7899999999999999987765 78775 9999999999999975
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00035 Score=76.94 Aligned_cols=122 Identities=22% Similarity=0.267 Sum_probs=91.1
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHH----HHHHHHHHHHHcCCCcEEEEEc----C
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIK----DAEVIQEVRKKVGHRIELRVDA----N 709 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~----d~~~v~~vr~~~g~~~~l~vDa----N 709 (983)
+++.+.++.+++.||..++|+.+.+ .+++. -++.+++||+++...+.+++.. +
T Consensus 144 ~~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~ 223 (338)
T 1z41_A 144 QEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTD 223 (338)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCST
T ss_pred HHHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCC
Confidence 4567777788889999999998741 12222 3788999999995455556655 4
Q ss_pred CCCCHHHHHHHHhhcccCCCceee--------c--CCC---ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 710 RNWTYQEALEFGFLIKDCDLQYIE--------E--PVQ---NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 710 ~~~~~~~a~~~~~~l~~~~i~~iE--------e--P~~---~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
++|+.+++.++++.|++.++.||+ + |.. +.+..+++++.+++||.+...+.+.. ....+++.
T Consensus 224 ~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~-----~a~~~l~~ 298 (338)
T 1z41_A 224 KGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGS-----MAEEILQN 298 (338)
T ss_dssp TSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHH-----HHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHH-----HHHHHHHc
Confidence 589999999999999999999998 2 322 34556788888999999999988764 35555555
Q ss_pred C-ceEEEE
Q 041113 777 G-IVAIVI 783 (983)
Q Consensus 777 ~-~~~i~~ 783 (983)
| +|.|.+
T Consensus 299 G~aD~V~i 306 (338)
T 1z41_A 299 GRADLIFI 306 (338)
T ss_dssp TSCSEEEE
T ss_pred CCceEEee
Confidence 5 888765
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00019 Score=80.02 Aligned_cols=121 Identities=13% Similarity=0.090 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhh-hcCCCEEEEeccCC--------------------C-ChHH----HHHHHHHHHHHcCCC-cEEEEEc
Q 041113 656 PVEVASIATTLV-EEGFTAIKLKVARR--------------------A-DPIK----DAEVIQEVRKKVGHR-IELRVDA 708 (983)
Q Consensus 656 ~~~~~~~~~~~~-~~G~~~~KiKig~~--------------------~-~~~~----d~~~v~~vr~~~g~~-~~l~vDa 708 (983)
.+++++.++.++ +.||..|+|+.+.+ . +++. -++.|++||+++|++ +-+++.+
T Consensus 173 i~~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~ 252 (379)
T 3aty_A 173 IPLFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISP 252 (379)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECc
Confidence 445567777888 89999999998631 1 2222 257899999999865 5555555
Q ss_pred C-------CCCCHHHHHHHHhhcccCCCceeecCCC-------ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhc
Q 041113 709 N-------RNWTYQEALEFGFLIKDCDLQYIEEPVQ-------NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA 774 (983)
Q Consensus 709 N-------~~~~~~~a~~~~~~l~~~~i~~iEeP~~-------~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~ 774 (983)
+ ++|+.++++++++.|+++++.|||.+.. ..+ .+++++.+++||.+.+.+ +.. .+..++
T Consensus 253 ~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~~-~~~ir~~~~iPvi~~G~i-t~~-----~a~~~l 325 (379)
T 3aty_A 253 LNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVNQQIGDV-VAWVRGSYSGVKISNLRY-DFE-----EADQQI 325 (379)
T ss_dssp TCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTSCCCCCH-HHHHHTTCCSCEEEESSC-CHH-----HHHHHH
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCCCCccHH-HHHHHHHCCCcEEEECCC-CHH-----HHHHHH
Confidence 3 5789999999999999999999998762 135 788999999999999988 643 345555
Q ss_pred CCC-ceEEEE
Q 041113 775 HPG-IVAIVI 783 (983)
Q Consensus 775 ~~~-~~~i~~ 783 (983)
+.+ +|.|.+
T Consensus 326 ~~g~aD~V~i 335 (379)
T 3aty_A 326 REGKVDAVAF 335 (379)
T ss_dssp HTTSCSEEEE
T ss_pred HcCCCeEEEe
Confidence 554 788764
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=97.61 E-value=6.6e-05 Score=77.38 Aligned_cols=44 Identities=25% Similarity=0.460 Sum_probs=40.6
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||++++...|..+.+.|.+. |+|+++|+||||.|..+
T Consensus 24 ~~~vv~~hG~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~ 68 (238)
T 1ufo_A 24 KALLLALHGLQGSKEHILALLPGYAERGFLLLAFDAPRHGEREGP 68 (238)
T ss_dssp CEEEEEECCTTCCHHHHHHTSTTTGGGTEEEEECCCTTSTTSSCC
T ss_pred ccEEEEECCCcccchHHHHHHHHHHhCCCEEEEecCCCCccCCCC
Confidence 789999999999999999999999765 99999999999999764
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.58 E-value=7.2e-05 Score=85.05 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=46.1
Q ss_pred EEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHH--HHhhCCCEEEEEcCCCCCCCCC
Q 041113 914 LNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIM--KAVSGSARCISIDLPGHGGSKM 980 (983)
Q Consensus 914 ~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~--~~l~~~~~vi~~Dl~G~G~S~~ 980 (983)
+.+...+......+...+.+. .|+|||+||++++...|.... ..+..+|+|+++|+||||.|..
T Consensus 138 ~~i~~~~~~l~~~~~~~~~~~---~p~vv~~HG~~~~~~~~~~~~~~~~~~~g~~vi~~D~~G~G~s~~ 203 (405)
T 3fnb_A 138 IEVPFEGELLPGYAIISEDKA---QDTLIVVGGGDTSREDLFYMLGYSGWEHDYNVLMVDLPGQGKNPN 203 (405)
T ss_dssp EEEEETTEEEEEEEECCSSSC---CCEEEEECCSSCCHHHHHHHTHHHHHHTTCEEEEECCTTSTTGGG
T ss_pred EEEeECCeEEEEEEEcCCCCC---CCEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEEcCCCCcCCCC
Confidence 333334444443334444322 589999999999999998766 5567889999999999999953
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=97.57 E-value=5.4e-05 Score=70.99 Aligned_cols=46 Identities=17% Similarity=0.368 Sum_probs=37.6
Q ss_pred EEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 926 KVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 926 ~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
++...|+ +|+|||+| ++...|..+ |+++|+|+++|+||||.|+.+.
T Consensus 15 ~~~~~g~-----~~~vv~~H---~~~~~~~~~---l~~~~~v~~~d~~G~G~s~~~~ 60 (131)
T 2dst_A 15 VFDRVGK-----GPPVLLVA---EEASRWPEA---LPEGYAFYLLDLPGYGRTEGPR 60 (131)
T ss_dssp EEEEECC-----SSEEEEES---SSGGGCCSC---CCTTSEEEEECCTTSTTCCCCC
T ss_pred EEEEcCC-----CCeEEEEc---CCHHHHHHH---HhCCcEEEEECCCCCCCCCCCC
Confidence 3455554 68999999 677888887 8778999999999999998653
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=97.53 E-value=3.6e-05 Score=86.03 Aligned_cols=44 Identities=27% Similarity=0.438 Sum_probs=38.9
Q ss_pred CceEEEeCCCCCChhh---------HHHHHH---Hh-hCCCEEEEEcCCC-CCCCCCC
Q 041113 938 DNILLFLHGFLGTGEE---------WIPIMK---AV-SGSARCISIDLPG-HGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~---------w~~~~~---~l-~~~~~vi~~Dl~G-~G~S~~~ 981 (983)
+|+|||+||+++++.. |..+++ .| +++|+||++|+|| ||.|+.+
T Consensus 59 ~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~~g~s~~~ 116 (377)
T 2b61_A 59 NNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGP 116 (377)
T ss_dssp CCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCT
T ss_pred CCeEEEeCCCCCccccccccccchhhhhccCcccccccCCceEEEecCCCCCCCCCCC
Confidence 5899999999999998 999986 48 6789999999999 6888765
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=97.52 E-value=5.3e-05 Score=84.00 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=39.6
Q ss_pred CceEEEeCCCCCChhhHH----------------HHHHHhhCC-CEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWI----------------PIMKAVSGS-ARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~----------------~~~~~l~~~-~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||++++...|. .+.+.|+++ |+|+++|+||||.|+.+
T Consensus 50 ~~~vv~~hG~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~ 110 (354)
T 2rau_A 50 NDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFL 110 (354)
T ss_dssp EEEEEEECCTTCCHHHHHHSEETTEECSCCCGGGCHHHHHHHTTEEEEEEECGGGGCCTTC
T ss_pred CCEEEEECCCCCCccccccccccccccccccchhhHHHHHHhCCCEEEEecCCCCCCCCcc
Confidence 789999999999999776 899999775 99999999999999754
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=7.5e-05 Score=82.28 Aligned_cols=44 Identities=23% Similarity=0.261 Sum_probs=39.0
Q ss_pred CceEEEeCCCCCChhhHH-------HHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWI-------PIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~-------~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
+++|||+||++.+...|. .+.+.|.+ .|+|+++|+||||+|...
T Consensus 62 ~~~vvl~HG~g~~~~~~~~~pdg~~~~~~~l~~~G~~V~~~D~~G~G~S~~~ 113 (328)
T 1qlw_A 62 RYPITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATD 113 (328)
T ss_dssp SSCEEEECCTTCCGGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCC
T ss_pred CccEEEEeCCCCCCCccccCCCCchHHHHHHHHCCCeEEEECCCCcccCCCC
Confidence 689999999999999998 48887765 599999999999999864
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00021 Score=78.94 Aligned_cols=43 Identities=12% Similarity=0.233 Sum_probs=36.5
Q ss_pred CceEEEeCCCCCChhh---HHHHHHHhhCCCEEEEEc----CCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEE---WIPIMKAVSGSARCISID----LPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~---w~~~~~~l~~~~~vi~~D----l~G~G~S~~ 980 (983)
+|+|||+|||+.+... |..+.+.|+.+|+||++| +||||.|+.
T Consensus 38 ~~~vvllHG~~~~~~~~~~~~~l~~~L~~g~~Vi~~Dl~~D~~G~G~S~~ 87 (335)
T 2q0x_A 38 RRCVLWVGGQTESLLSFDYFTNLAEELQGDWAFVQVEVPSGKIGSGPQDH 87 (335)
T ss_dssp SSEEEEECCTTCCTTCSTTHHHHHHHHTTTCEEEEECCGGGBTTSCSCCH
T ss_pred CcEEEEECCCCccccchhHHHHHHHHHHCCcEEEEEeccCCCCCCCCccc
Confidence 6899999999976553 788999998889999995 599999863
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=97.49 E-value=7.8e-05 Score=78.81 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=39.7
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~ 979 (983)
+|+|||+||++++...|..+++.|.+. |+|+++|+||||.|+
T Consensus 40 ~~~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~ 82 (270)
T 3rm3_A 40 PVGVLLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHY 82 (270)
T ss_dssp SEEEEEECCTTCCGGGTHHHHHHHHHTTCEEEECCCTTCSSCH
T ss_pred CeEEEEECCCCCChhHHHHHHHHHHHCCCEEEEeCCCCCCCCc
Confidence 789999999999999999999999875 999999999999986
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00022 Score=79.46 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHH----HHHHHHHHHHHcCCCcEEEEEcC---
Q 041113 656 PVEVASIATTLVEEGFTAIKLKVARR-------------------ADPIK----DAEVIQEVRKKVGHRIELRVDAN--- 709 (983)
Q Consensus 656 ~~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~----d~~~v~~vr~~~g~~~~l~vDaN--- 709 (983)
.+++++.++.+++.||..|+|+.+.+ .+++. -++.|++||+++|++ .+.++-+
T Consensus 166 i~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~-~V~vrls~~~ 244 (376)
T 1icp_A 166 VNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSD-RVGIRISPFA 244 (376)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG-GEEEEECTTC
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCC-ceEEEecccc
Confidence 35677778888889999999998641 11222 367899999999975 5555543
Q ss_pred ------CCCCHHHHHHHHhhcccCCCceeecCCC----------ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhh
Q 041113 710 ------RNWTYQEALEFGFLIKDCDLQYIEEPVQ----------NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKY 773 (983)
Q Consensus 710 ------~~~~~~~a~~~~~~l~~~~i~~iEeP~~----------~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~ 773 (983)
..++.++++++++.|+++++.|||-+.. +++..+++++..++||++...+ +.. .+..+
T Consensus 245 ~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~~iPvi~~G~i-~~~-----~a~~~ 318 (376)
T 1icp_A 245 HYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGY-DRE-----DGNRA 318 (376)
T ss_dssp CTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEEESSC-CHH-----HHHHH
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHcCCCEEEeCCC-CHH-----HHHHH
Confidence 3457888999999999999999998643 1223467788888888888877 543 24444
Q ss_pred cCCC-ceEEEE
Q 041113 774 AHPG-IVAIVI 783 (983)
Q Consensus 774 ~~~~-~~~i~~ 783 (983)
++.+ +|.|.+
T Consensus 319 l~~g~aD~V~~ 329 (376)
T 1icp_A 319 LIEDRADLVAY 329 (376)
T ss_dssp HHTTSCSEEEE
T ss_pred HHCCCCcEEee
Confidence 4444 777654
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00039 Score=84.46 Aligned_cols=122 Identities=19% Similarity=0.254 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHH----HHHHHHHHHHHcCCCcEE--EEEc---
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIK----DAEVIQEVRKKVGHRIEL--RVDA--- 708 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~----d~~~v~~vr~~~g~~~~l--~vDa--- 708 (983)
+++.+.++.+++.||..++++.+.. .+++. -.+.+++||+++|+++.+ ++.+
T Consensus 141 ~~~~~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~ 220 (671)
T 1ps9_A 141 DNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDL 220 (671)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECcccc
Confidence 5667777788889999999997641 12222 378899999999999776 4444
Q ss_pred -CCCCCHHHHHHHHhhcccCCCceee-------cCCC----------ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHH
Q 041113 709 -NRNWTYQEALEFGFLIKDCDLQYIE-------EPVQ----------NEEDIIKYCEESGLPVALDETIDKFQKDPLNML 770 (983)
Q Consensus 709 -N~~~~~~~a~~~~~~l~~~~i~~iE-------eP~~----------~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~ 770 (983)
+++|+.++++++++.|+++++.||+ .+.+ ..+..+++++..++||.+...+.+.. ..
T Consensus 221 ~~~g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~-----~a 295 (671)
T 1ps9_A 221 VEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQ-----VA 295 (671)
T ss_dssp STTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHH-----HH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhcCceEEEeCCCCCHH-----HH
Confidence 4589999999999999999999995 3322 13445788888999999999988764 35
Q ss_pred HhhcCCC-ceEEEE
Q 041113 771 EKYAHPG-IVAIVI 783 (983)
Q Consensus 771 ~~~~~~~-~~~i~~ 783 (983)
..+++.+ +|.|.+
T Consensus 296 ~~~l~~g~aD~V~~ 309 (671)
T 1ps9_A 296 DDILSRGDADMVSM 309 (671)
T ss_dssp HHHHHTTSCSEEEE
T ss_pred HHHHHcCCCCEEEe
Confidence 5555555 788764
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00011 Score=80.69 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=40.1
Q ss_pred CceEEEeCCC--CCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGF--LGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~--~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||+ +++...|..+.+.|..+|+|+++|+||||.|+.+
T Consensus 81 ~~~lv~lhG~~~~~~~~~~~~~~~~L~~~~~v~~~d~~G~G~~~~~ 126 (319)
T 3lcr_A 81 GPQLILVCPTVMTTGPQVYSRLAEELDAGRRVSALVPPGFHGGQAL 126 (319)
T ss_dssp SCEEEEECCSSTTCSGGGGHHHHHHHCTTSEEEEEECTTSSTTCCE
T ss_pred CCeEEEECCCCcCCCHHHHHHHHHHhCCCceEEEeeCCCCCCCCCC
Confidence 7899999996 7788999999999988899999999999987753
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=97.43 E-value=5.2e-05 Score=84.25 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=37.5
Q ss_pred CceEEEeCCCCCChh-------------hHHHHHH---Hh-hCCCEEEEEcCCC--CCCCCC
Q 041113 938 DNILLFLHGFLGTGE-------------EWIPIMK---AV-SGSARCISIDLPG--HGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~-------------~w~~~~~---~l-~~~~~vi~~Dl~G--~G~S~~ 980 (983)
+|+|||+||+++++. .|..+++ .| +++|+||++|+|| ||.|..
T Consensus 46 ~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~vi~~D~~G~~~G~s~~ 107 (366)
T 2pl5_A 46 NNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGCKGSSGP 107 (366)
T ss_dssp CCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSSSSSST
T ss_pred CceEEEecccCCcccccccccccccccchHHhhcCCcccccccccEEEEecCCCcccCCCCC
Confidence 689999999999998 8999884 34 6789999999999 898864
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=5.9e-05 Score=86.87 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=42.8
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChhh---HHHHHH---Hh-hCCCEEEEEcCCC--CCCCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGEE---WIPIMK---AV-SGSARCISIDLPG--HGGSKM 980 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~~---w~~~~~---~l-~~~~~vi~~Dl~G--~G~S~~ 980 (983)
++|...|+.....+|+|||+||+++++.. |..++. .| +++|+||++|+|| ||.|+.
T Consensus 96 l~y~~~G~~~~~~~p~vvllHG~~~~~~~~~~w~~~~~~~~~L~~~~~~Vi~~D~~G~~~G~S~~ 160 (444)
T 2vat_A 96 VAYKSWGRMNVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSPFGSAGP 160 (444)
T ss_dssp EEEEEESCCCTTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCSSSSSST
T ss_pred EEEEEecCCCCCCCCeEEEECCCCcccchhhHHHHhcCccchhhccCCEEEEecCCCCCCCCCCC
Confidence 34455554211125899999999999999 999886 57 6789999999999 698863
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00013 Score=78.97 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=38.1
Q ss_pred CceEEEeCCCCCCh-hhHH-HHHHHhhC-CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTG-EEWI-PIMKAVSG-SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~-~~w~-~~~~~l~~-~~~vi~~Dl~G~G~S~ 979 (983)
+++|||||||+++. ..|. .+.+.|.+ .|+|+++|+||||.++
T Consensus 65 ~~pVVLvHG~~~~~~~~w~~~l~~~L~~~Gy~V~a~DlpG~G~~~ 109 (316)
T 3icv_A 65 SKPILLVPGTGTTGPQSFDSNWIPLSAQLGYTPCWISPPPFMLND 109 (316)
T ss_dssp SSEEEEECCTTCCHHHHHTTTHHHHHHHTTCEEEEECCTTTTCSC
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHHHHHCCCeEEEecCCCCCCCc
Confidence 67999999999998 7998 89999976 5999999999999875
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00046 Score=71.32 Aligned_cols=71 Identities=10% Similarity=0.009 Sum_probs=48.6
Q ss_pred eeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 909 VLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
++.+.+.+...+.............. ...|.|||+||++++...|..+.+.|++ .|.|+++|++|||.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~p~vv~~HG~~g~~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~~ 75 (241)
T 3f67_A 4 IIAGETSIPSQGENMPAYHARPKNAD-GPLPIVIVVQEIFGVHEHIRDLCRRLAQEGYLAIAPELYFRQGDPN 75 (241)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTCC-SCEEEEEEECCTTCSCHHHHHHHHHHHHTTCEEEEECTTTTTCCGG
T ss_pred ceeeeEEEecCCcceEEEEecCCCCC-CCCCEEEEEcCcCccCHHHHHHHHHHHHCCcEEEEecccccCCCCC
Confidence 45555555544444333222221110 1158999999999999999999999965 59999999999987653
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00041 Score=77.06 Aligned_cols=122 Identities=18% Similarity=0.171 Sum_probs=88.6
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHHH----HHHHHHHHHHcCCCc--EEEEEcCC-
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIKD----AEVIQEVRKKVGHRI--ELRVDANR- 710 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~d----~~~v~~vr~~~g~~~--~l~vDaN~- 710 (983)
+++.+.++.+++.||..+.|+.+.. .+++.. ++.|++||+++|+++ -+++.++.
T Consensus 158 ~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~ 237 (363)
T 3l5l_A 158 QDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEY 237 (363)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECS
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhc
Confidence 4556667777789999999998631 122222 678999999999885 44555432
Q ss_pred ---C-CCHHHHHHHHhhcccCCCceeecCC-----------C---ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHh
Q 041113 711 ---N-WTYQEALEFGFLIKDCDLQYIEEPV-----------Q---NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEK 772 (983)
Q Consensus 711 ---~-~~~~~a~~~~~~l~~~~i~~iEeP~-----------~---~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~ 772 (983)
+ |+.++++++++.|++.++.||+-.. . +.+..+++++..++||.+...+.+.. ....
T Consensus 238 ~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e-----~a~~ 312 (363)
T 3l5l_A 238 DGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQ-----LAEA 312 (363)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEECSSTTSHH-----HHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEEeCCCCCHH-----HHHH
Confidence 3 8899999999999999999998432 1 23445788888899999999988764 3555
Q ss_pred hcCCC-ceEEEE
Q 041113 773 YAHPG-IVAIVI 783 (983)
Q Consensus 773 ~~~~~-~~~i~~ 783 (983)
+++.| +|.|.+
T Consensus 313 ~l~~G~aD~V~i 324 (363)
T 3l5l_A 313 ALQANQLDLVSV 324 (363)
T ss_dssp HHHTTSCSEEEC
T ss_pred HHHCCCccEEEe
Confidence 55555 787764
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00062 Score=75.53 Aligned_cols=121 Identities=17% Similarity=0.106 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHH----HHHHHHHHHHHcCCC-cEEEEEcC---
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIK----DAEVIQEVRKKVGHR-IELRVDAN--- 709 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~----d~~~v~~vr~~~g~~-~~l~vDaN--- 709 (983)
+++++.++.+++.||..|+|+.+.. .+++. -++.+++||+++|++ +-+++-++
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~ 240 (364)
T 1vyr_A 161 NDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 240 (364)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCB
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEcccccc
Confidence 5677777778889999999988631 11222 367799999999876 34444443
Q ss_pred -----CCCCHHHHHHHHhhcccCCCceeecCCC--------ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 710 -----RNWTYQEALEFGFLIKDCDLQYIEEPVQ--------NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 710 -----~~~~~~~a~~~~~~l~~~~i~~iEeP~~--------~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
+.++.++++++++.|+++++.||+-... .++..+++++.+++||++...+ +.. .+..+++.
T Consensus 241 ~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~~~iPvi~~Ggi-t~~-----~a~~~l~~ 314 (364)
T 1vyr_A 241 QNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGAY-TAE-----KAEDLIGK 314 (364)
T ss_dssp TTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSC-CHH-----HHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCCcccHHHHHHHHHHCCCCEEEECCc-CHH-----HHHHHHHC
Confidence 3568889999999999999999998652 2455678888899999999888 543 35555555
Q ss_pred C-ceEEEE
Q 041113 777 G-IVAIVI 783 (983)
Q Consensus 777 ~-~~~i~~ 783 (983)
+ +|.|.+
T Consensus 315 g~aD~V~~ 322 (364)
T 1vyr_A 315 GLIDAVAF 322 (364)
T ss_dssp TSCSEEEE
T ss_pred CCccEEEE
Confidence 5 787664
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0001 Score=83.09 Aligned_cols=43 Identities=26% Similarity=0.340 Sum_probs=38.6
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-----CC---EEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-----SA---RCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-----~~---~vi~~Dl~G~G~S~~ 980 (983)
+|+|||+||++++...|..+++.|.+ +| +||++|+||||.|+.
T Consensus 52 ~~~vvllHG~~~~~~~~~~~~~~L~~~~~~~G~~~~~vi~~D~~G~G~S~~ 102 (398)
T 2y6u_A 52 RLNLVFLHGSGMSKVVWEYYLPRLVAADAEGNYAIDKVLLIDQVNHGDSAV 102 (398)
T ss_dssp EEEEEEECCTTCCGGGGGGGGGGSCCCBTTTTEEEEEEEEECCTTSHHHHH
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHhhhhcCcceeEEEEEcCCCCCCCCC
Confidence 37999999999999999999999982 36 999999999999864
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0017 Score=71.14 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccC---------C----------CChHHH----HHHHHHHHHHcCCCcEE--EEEcC--
Q 041113 657 VEVASIATTLVEEGFTAIKLKVAR---------R----------ADPIKD----AEVIQEVRKKVGHRIEL--RVDAN-- 709 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~---------~----------~~~~~d----~~~v~~vr~~~g~~~~l--~vDaN-- 709 (983)
+++.+.++.+++.||..+.|+.+. + .+++.. ++.|++||+++|+++.+ ++-++
T Consensus 143 ~~f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~ 222 (343)
T 3kru_A 143 KAFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDY 222 (343)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCS
T ss_pred HHHHHHHhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhh
Confidence 455666777778999999999431 1 123222 67899999999988544 44443
Q ss_pred --CCCCHHHHHHHHhhcccCCCceeecCC----------C---ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhc
Q 041113 710 --RNWTYQEALEFGFLIKDCDLQYIEEPV----------Q---NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA 774 (983)
Q Consensus 710 --~~~~~~~a~~~~~~l~~~~i~~iEeP~----------~---~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~ 774 (983)
++|+.++++++++.|++. +.||+-.. . +.+-.+++++..++||.+...+.+.. ....++
T Consensus 223 ~~~g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e-----~Ae~~l 296 (343)
T 3kru_A 223 MEGGINIDMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSAVGLITTQE-----LAEEIL 296 (343)
T ss_dssp STTSCCHHHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCEEEEESSCCCHH-----HHHHHH
T ss_pred hccCccHHHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHhcCcccceeeeeeHHH-----HHHHHH
Confidence 478999999999999999 99998731 1 24445778888899999998887754 344555
Q ss_pred CCC-ceEEEE
Q 041113 775 HPG-IVAIVI 783 (983)
Q Consensus 775 ~~~-~~~i~~ 783 (983)
+.| +|.|.+
T Consensus 297 ~~G~aD~V~i 306 (343)
T 3kru_A 297 SNERADLVAL 306 (343)
T ss_dssp HTTSCSEEEE
T ss_pred hchhhHHHHH
Confidence 545 787654
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00012 Score=77.76 Aligned_cols=43 Identities=9% Similarity=0.178 Sum_probs=39.4
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+++|||+||+++++..|..+.+ |+++|+|+++|+||||.++.+
T Consensus 21 ~~~lv~lhg~~~~~~~~~~~~~-l~~~~~v~~~d~~G~~~~~~~ 63 (265)
T 3ils_A 21 RKTLFMLPDGGGSAFSYASLPR-LKSDTAVVGLNCPYARDPENM 63 (265)
T ss_dssp SEEEEEECCTTCCGGGGTTSCC-CSSSEEEEEEECTTTTCGGGC
T ss_pred CCEEEEECCCCCCHHHHHHHHh-cCCCCEEEEEECCCCCCCCCC
Confidence 7899999999999999999999 988899999999999877643
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00012 Score=79.53 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=40.9
Q ss_pred CceEEEeCCCCCCh--hhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTG--EEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~--~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||+++++ ..|..+...|..+|+|+++|+||||.|+.+
T Consensus 67 ~~~lvllhG~~~~~~~~~~~~~~~~l~~~~~v~~~d~~G~G~s~~~ 112 (300)
T 1kez_A 67 EVTVICCAGTAAISGPHEFTRLAGALRGIAPVRAVPQPGYEEGEPL 112 (300)
T ss_dssp SSEEEECCCSSTTCSTTTTHHHHHHTSSSCCBCCCCCTTSSTTCCB
T ss_pred CCeEEEECCCcccCcHHHHHHHHHhcCCCceEEEecCCCCCCCCCC
Confidence 78999999999988 999999999988899999999999998754
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00069 Score=74.80 Aligned_cols=44 Identities=20% Similarity=0.527 Sum_probs=40.5
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
.|+|||+||++++...|..+...++.+|.|+++|+||||.|+.+
T Consensus 108 ~p~vv~~HG~g~~~~~~~~~~~~~~~G~~v~~~D~rG~g~s~~~ 151 (346)
T 3fcy_A 108 HPALIRFHGYSSNSGDWNDKLNYVAAGFTVVAMDVRGQGGQSQD 151 (346)
T ss_dssp EEEEEEECCTTCCSCCSGGGHHHHTTTCEEEEECCTTSSSSCCC
T ss_pred cCEEEEECCCCCCCCChhhhhHHHhCCcEEEEEcCCCCCCCCCC
Confidence 68999999999999999998888888899999999999988764
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00062 Score=71.23 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=35.9
Q ss_pred CceEEEeCCCCC---Ch--hhHHHHHHHhhCC-CEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLG---TG--EEWIPIMKAVSGS-ARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~---~~--~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~~ 981 (983)
.|+|||+||+++ +. ..|..+.+.|.+. |+|+++|+||||.|..+
T Consensus 47 ~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~G~s~~~ 96 (249)
T 2i3d_A 47 APIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGE 96 (249)
T ss_dssp CCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCSC
T ss_pred CCEEEEECCCcccCCCccchHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
Confidence 688999999843 22 4578888888765 99999999999999764
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00069 Score=73.55 Aligned_cols=44 Identities=23% Similarity=0.189 Sum_probs=39.8
Q ss_pred CceEEEeCCCC---CChhhHHHHHHHhhC--CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFL---GTGEEWIPIMKAVSG--SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~---~~~~~w~~~~~~l~~--~~~vi~~Dl~G~G~S~~~ 981 (983)
.|+|||+||++ ++...|..+...|++ +|+|+++|+||||.|..+
T Consensus 73 ~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~g~~~~~ 121 (311)
T 2c7b_A 73 LPAVLYYHGGGFVFGSIETHDHICRRLSRLSDSVVVSVDYRLAPEYKFP 121 (311)
T ss_dssp EEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTCEEEEECCCCTTTSCTT
T ss_pred CcEEEEECCCcccCCChhhhHHHHHHHHHhcCCEEEEecCCCCCCCCCC
Confidence 58899999999 899999999999976 699999999999998754
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00065 Score=68.67 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=37.7
Q ss_pred CceEEEeCC-----CCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHG-----FLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG-----~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~~ 981 (983)
.|+|||+|| ...+...|..+.+.|.+. |+|+++|+||||.|..+
T Consensus 31 ~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~ 80 (208)
T 3trd_A 31 SVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVGKSQGR 80 (208)
T ss_dssp SEEEEEECSCGGGTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTCCSC
T ss_pred CCEEEEEcCCCCCCCccCCchHHHHHHHHHHCCCEEEEEecCCCCCCCCC
Confidence 789999999 445567799999999765 99999999999999764
|
| >3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00085 Score=80.79 Aligned_cols=119 Identities=15% Similarity=0.166 Sum_probs=81.2
Q ss_pred CCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhc----cchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCC
Q 041113 320 RGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHD----TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTE 394 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~----~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~ 394 (983)
-|.+|+ |++.|+|+++.+ +.+|+|++|||...=. ..|+...+. .+++.-+++|+++|++.+-..
T Consensus 174 tG~LGq--Gls~AvG~A~~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~-~~~l~nl~~i~D~N~~~i~g~-------- 242 (845)
T 3ahc_A 174 GGELGY--ALSHAYGAVMNNPSLFVPCIIGDGEAETGPLATGWQSNKLVN-PRTDGIVLPILHLNGYKIANP-------- 242 (845)
T ss_dssp CSSTTC--HHHHHHHHHTTCTTCEEEEEEETTGGGSHHHHHHGGGGGSCC-TTTSCEEEEEEEECSBSSSSB--------
T ss_pred CCCccc--hHhHHhhhhhcCCCCeEEEEECCCchhhhcchhhhHHhhhhh-hhcCCCEEEEEECCCCcCCCC--------
Confidence 489999 999999999988 8999999999994310 112222221 267877889999999876421
Q ss_pred ccccccccccCCCCCHHHHHHHcCCcee-eeC-----CHHHHHHHHHhhh---------------c--cCCC--EEEEEE
Q 041113 395 PRILDQYFYTTHNISIQNLCLAHGLNHV-QVK-----TKVELEEALSMSQ---------------H--LGTD--RVIEVE 449 (983)
Q Consensus 395 ~~~~~~~~~~~~~~df~~la~a~G~~~~-~v~-----~~~eL~~aL~~a~---------------~--~~~p--~lIeV~ 449 (983)
.... ....-|+.+.-++||.+.+ .|+ +.+++.+++++++ + .++| .+|-+.
T Consensus 243 -t~l~----~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~r 317 (845)
T 3ahc_A 243 -TILA----RISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFR 317 (845)
T ss_dssp -CHHH----HSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEE
T ss_pred -cccc----ccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEE
Confidence 0000 0012367888899999987 665 5777776654322 2 3689 999999
Q ss_pred cCccc
Q 041113 450 SCIDA 454 (983)
Q Consensus 450 ~~~~~ 454 (983)
|.+..
T Consensus 318 T~kG~ 322 (845)
T 3ahc_A 318 TPKGW 322 (845)
T ss_dssp CCTTT
T ss_pred CcccC
Confidence 87644
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0016 Score=70.26 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=39.0
Q ss_pred CceEEEeCCCCCC-hhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGT-GEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~-~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
.|.|||+||++++ ...|.........+|.|+++|+||||.|..+
T Consensus 82 ~p~vv~~HG~~~~~~~~~~~~~~l~~~g~~v~~~d~rg~g~s~~~ 126 (318)
T 1l7a_A 82 HPAIVKYHGYNASYDGEIHEMVNWALHGYATFGMLVRGQQRSEDT 126 (318)
T ss_dssp EEEEEEECCTTCCSGGGHHHHHHHHHTTCEEEEECCTTTSSSCCC
T ss_pred ccEEEEEcCCCCCCCCCcccccchhhCCcEEEEecCCCCCCCCCc
Confidence 5889999999999 9999988766667899999999999998754
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0013 Score=71.99 Aligned_cols=70 Identities=16% Similarity=0.102 Sum_probs=50.7
Q ss_pred eeEEEEEEccc----CceeEEEEeecCCccCCCCceEEEeCCCC---CChhhHHHHHHHhhC--CCEEEEEcCCCCCCCC
Q 041113 909 VLRYQLNVNSK----DFCSFIKVQEIGQRIDIQDNILLFLHGFL---GTGEEWIPIMKAVSG--SARCISIDLPGHGGSK 979 (983)
Q Consensus 909 ~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~lv~lHG~~---~~~~~w~~~~~~l~~--~~~vi~~Dl~G~G~S~ 979 (983)
.+.+.+.+... .+.++++....+.+. .|+|||+||++ ++...|..++..|.+ +|+|+++|+||||.|.
T Consensus 49 ~~~~~~~i~~~~g~~~l~~~~~~P~~~~~~---~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~G~~Vv~~d~rg~~~~~ 125 (323)
T 1lzl_A 49 VSLRELSAPGLDGDPEVKIRFVTPDNTAGP---VPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPETT 125 (323)
T ss_dssp EEEEEEEECCSTTCCCEEEEEEEESSCCSC---EEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTTTSC
T ss_pred ceEEEEEecCCCCCceeEEEEEecCCCCCC---CcEEEEECCCccccCChhhhHHHHHHHHHhcCcEEEEecCCCCCCCC
Confidence 45555666543 244444443322222 68999999998 889999999988875 5999999999999987
Q ss_pred CC
Q 041113 980 MQ 981 (983)
Q Consensus 980 ~~ 981 (983)
.+
T Consensus 126 ~~ 127 (323)
T 1lzl_A 126 FP 127 (323)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.001 Score=70.40 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=37.1
Q ss_pred eeEEEEEEcccCceeEEE-EeecCCccCCCCceEEEeCCCCCChh--hHHHHHHHhhCC-CEEEEEcCCCCCCCCC
Q 041113 909 VLRYQLNVNSKDFCSFIK-VQEIGQRIDIQDNILLFLHGFLGTGE--EWIPIMKAVSGS-ARCISIDLPGHGGSKM 980 (983)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~lv~lHG~~~~~~--~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~ 980 (983)
.+++.+++..++....-. +...+... .|.||++||++.+.. .+..+.+.|++. |.|+++|+||||.|..
T Consensus 29 ~~e~~~~~~~dG~~i~g~l~~P~~~~~---~p~Vl~~HG~g~~~~~~~~~~~a~~la~~Gy~Vl~~D~rG~G~s~~ 101 (259)
T 4ao6_A 29 VQERGFSLEVDGRTVPGVYWSPAEGSS---DRLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERAS 101 (259)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESSSCC---SEEEEEEC--------CHHHHHHHHHHHTTEEEEEECCCC------
T ss_pred ceEEEEEEeeCCeEEEEEEEeCCCCCC---CCEEEEeCCCcccccchHHHHHHHHHHHCCCeEEeeccCCCCCCCC
Confidence 455666666665544432 22333322 577899999998854 456778888665 9999999999998864
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00042 Score=71.39 Aligned_cols=43 Identities=7% Similarity=0.094 Sum_probs=39.3
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
.|.|||+||++++...|..+.+.|.+ +|.|+++|+||||.|..
T Consensus 28 ~p~vv~~hG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~ 71 (236)
T 1zi8_A 28 APVIVIAQDIFGVNAFMRETVSWLVDQGYAAVCPDLYARQAPGT 71 (236)
T ss_dssp EEEEEEECCTTBSCHHHHHHHHHHHHTTCEEEEECGGGGTSTTC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHhCCcEEEeccccccCCCcc
Confidence 57899999999999999999999976 69999999999998853
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00042 Score=72.47 Aligned_cols=42 Identities=21% Similarity=0.406 Sum_probs=39.7
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEE--cCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISI--DLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~--Dl~G~G~S~ 979 (983)
+|+|||+||++++...|..+.+.|+++|+|+++ |++|||.|.
T Consensus 62 ~p~vv~~HG~~~~~~~~~~~~~~l~~~~~v~~~~~d~~g~g~s~ 105 (251)
T 2r8b_A 62 APLFVLLHGTGGDENQFFDFGARLLPQATILSPVGDVSEHGAAR 105 (251)
T ss_dssp SCEEEEECCTTCCHHHHHHHHHHHSTTSEEEEECCSEEETTEEE
T ss_pred CcEEEEEeCCCCCHhHHHHHHHhcCCCceEEEecCCcCCCCCcc
Confidence 789999999999999999999999988999999 899999874
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0011 Score=72.17 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=39.7
Q ss_pred CceEEEeCCCC---CChhhHHHHHHHhh--CCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFL---GTGEEWIPIMKAVS--GSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~---~~~~~w~~~~~~l~--~~~~vi~~Dl~G~G~S~~~ 981 (983)
.|+|||+||++ ++...|..+...|+ .+|.|+++|+||||+|..+
T Consensus 79 ~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~Vv~~dyrg~g~~~~p 127 (311)
T 1jji_A 79 SPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEHKFP 127 (311)
T ss_dssp EEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTSCTT
T ss_pred ceEEEEECCcccccCChhHhHHHHHHHHHHhCCEEEEecCCCCCCCCCC
Confidence 68999999999 89999999999997 3699999999999998764
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0018 Score=65.86 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=36.3
Q ss_pred CceEEEeCCCC---C--ChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFL---G--TGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~---~--~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
.|.|||+||++ + +...|..+.+.|.+ .|+|+++|+||||.|+.+
T Consensus 37 ~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~ 86 (220)
T 2fuk_A 37 PVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGS 86 (220)
T ss_dssp SEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCSC
T ss_pred cCEEEEECCCCCcCCcccchHHHHHHHHHHHCCCeEEEEecCCCCCCCCC
Confidence 68999999953 3 44568899999977 499999999999999754
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00065 Score=69.08 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=36.2
Q ss_pred CceEEEeCCCCCChhhH--HHHHHHhhC-CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEW--IPIMKAVSG-SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w--~~~~~~l~~-~~~vi~~Dl~G~G~S~ 979 (983)
.|+|||+||++++...| ..+.+.|.+ .|.|+++|+||||.|.
T Consensus 35 ~p~vv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~ 79 (223)
T 2o2g_A 35 TGIVLFAHGSGSSRYSPRNRYVAEVLQQAGLATLLIDLLTQEEEE 79 (223)
T ss_dssp CEEEEEECCTTCCTTCHHHHHHHHHHHHHTCEEEEECSSCHHHHH
T ss_pred ceEEEEecCCCCCCCccchHHHHHHHHHCCCEEEEEcCCCcCCCC
Confidence 78999999999998865 467888876 5999999999999764
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0018 Score=71.69 Aligned_cols=43 Identities=12% Similarity=-0.017 Sum_probs=38.1
Q ss_pred CceEEEeCCCCCChhhHHH-HHHHhhCC-CEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIP-IMKAVSGS-ARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~-~~~~l~~~-~~vi~~Dl~G~G~S~~ 980 (983)
.|+|||+||++++...|.. +.+.|.+. |.|+++|+||||.|..
T Consensus 96 ~p~vv~~hG~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~ 140 (367)
T 2hdw_A 96 LPAIVIGGPFGAVKEQSSGLYAQTMAERGFVTLAFDPSYTGESGG 140 (367)
T ss_dssp EEEEEEECCTTCCTTSHHHHHHHHHHHTTCEEEEECCTTSTTSCC
T ss_pred CCEEEEECCCCCcchhhHHHHHHHHHHCCCEEEEECCCCcCCCCC
Confidence 5889999999999999986 78888765 9999999999999874
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0006 Score=74.52 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=38.2
Q ss_pred CceEEEeCCCCCChhh-HH-HHHHHhhC-CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEE-WI-PIMKAVSG-SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~-w~-~~~~~l~~-~~~vi~~Dl~G~G~S~ 979 (983)
+++|||+||++++... |. .+.+.|.+ .|+|+++|+||||.++
T Consensus 31 ~~~VvllHG~~~~~~~~~~~~l~~~L~~~G~~v~~~d~~g~g~~~ 75 (317)
T 1tca_A 31 SKPILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPFMLND 75 (317)
T ss_dssp SSEEEEECCTTCCHHHHHTTTHHHHHHTTTCEEEEECCTTTTCSC
T ss_pred CCeEEEECCCCCCcchhhHHHHHHHHHhCCCEEEEECCCCCCCCc
Confidence 6799999999999997 99 89999976 5999999999999875
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00071 Score=71.35 Aligned_cols=42 Identities=10% Similarity=-0.001 Sum_probs=38.5
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~ 979 (983)
+|+|||+||++++...|..+.+.|.+ .|+|+++|+||||.|.
T Consensus 54 ~p~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~ 96 (262)
T 1jfr_A 54 FGAVVISPGFTAYQSSIAWLGPRLASQGFVVFTIDTNTTLDQP 96 (262)
T ss_dssp EEEEEEECCTTCCGGGTTTHHHHHHTTTCEEEEECCSSTTCCH
T ss_pred CCEEEEeCCcCCCchhHHHHHHHHHhCCCEEEEeCCCCCCCCC
Confidence 68999999999999999999999976 4999999999999874
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0027 Score=70.69 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=82.6
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHH----HHHHHHHHHHHcCCC-cEEEEEcC---
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIK----DAEVIQEVRKKVGHR-IELRVDAN--- 709 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~----d~~~v~~vr~~~g~~-~~l~vDaN--- 709 (983)
+++++.++.+++.||..|+|+.+.. .+++. -++.+++||+++|++ +-+++-++
T Consensus 166 ~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~ 245 (377)
T 2r14_A 166 EDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLEL 245 (377)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEecccccc
Confidence 5677777778889999999998631 12222 367899999999875 44555343
Q ss_pred ----CCCCHHHHHHHHhhcccCCCceeecCCC---------ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 710 ----RNWTYQEALEFGFLIKDCDLQYIEEPVQ---------NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 710 ----~~~~~~~a~~~~~~l~~~~i~~iEeP~~---------~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
++|+.++++++++.|++.++.||+-... +++-.+++++..++||.+...+ +.. ....+++.
T Consensus 246 ~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~ik~~~~iPvi~~Ggi-~~~-----~a~~~l~~ 319 (377)
T 2r14_A 246 FGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNY-DAG-----RAQARLDD 319 (377)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC------CCCTTHHHHHHHHCCSEEEEESSC-CHH-----HHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCcchHHHHHHHHHHCCCCEEEECCC-CHH-----HHHHHHHC
Confidence 4678899999999999999999986442 1333466777777777776666 332 24444444
Q ss_pred C-ceEEEE
Q 041113 777 G-IVAIVI 783 (983)
Q Consensus 777 ~-~~~i~~ 783 (983)
+ +|.|.+
T Consensus 320 g~aD~V~i 327 (377)
T 2r14_A 320 NTADAVAF 327 (377)
T ss_dssp TSCSEEEE
T ss_pred CCceEEee
Confidence 4 666553
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00032 Score=80.54 Aligned_cols=42 Identities=24% Similarity=0.591 Sum_probs=37.8
Q ss_pred CceEEEeCCCCCCh-hhHHH-HHHHhhC--CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTG-EEWIP-IMKAVSG--SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~-~~w~~-~~~~l~~--~~~vi~~Dl~G~G~S~ 979 (983)
+|+|||+|||+++. ..|.. +.+.|.+ +|+||++|++|||.|.
T Consensus 70 ~p~vvliHG~~~~~~~~w~~~~~~~l~~~~~~~Vi~~D~~g~G~S~ 115 (452)
T 1w52_X 70 RKTHFVIHGFRDRGEDSWPSDMCKKILQVETTNCISVDWSSGAKAE 115 (452)
T ss_dssp SCEEEEECCTTCCSSSSHHHHHHHHHHTTSCCEEEEEECHHHHTSC
T ss_pred CCEEEEEcCCCCCCCchHHHHHHHHHHhhCCCEEEEEecccccccc
Confidence 78999999999998 78988 7788765 7999999999999986
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0019 Score=68.50 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=36.5
Q ss_pred CceEEEeCC---CCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHG---FLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG---~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~ 979 (983)
.|+|||+|| ++++...|..+.+.|.+ .|+|+++|+||||.+.
T Consensus 35 ~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~ 80 (277)
T 3bxp_A 35 YPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGDQ 80 (277)
T ss_dssp EEEEEEECCSTTTSCCCTTHHHHHHHHHHTTCEEEEEECCCSTTTC
T ss_pred ccEEEEECCCccccCCCccchHHHHHHHHCCCEEEEEecccCCCCC
Confidence 689999999 77888899999998875 5999999999998443
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.001 Score=72.16 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=39.3
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~ 979 (983)
.|.|||+||++++...|..+.+.|.+. |.|+++|+||+|.|.
T Consensus 96 ~p~vv~~HG~~~~~~~~~~~~~~la~~G~~vv~~d~~g~g~s~ 138 (306)
T 3vis_A 96 YGAIAISPGYTGTQSSIAWLGERIASHGFVVIAIDTNTTLDQP 138 (306)
T ss_dssp EEEEEEECCTTCCHHHHHHHHHHHHTTTEEEEEECCSSTTCCH
T ss_pred CCEEEEeCCCcCCHHHHHHHHHHHHhCCCEEEEecCCCCCCCc
Confidence 688999999999999999999999876 999999999999884
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00033 Score=80.48 Aligned_cols=42 Identities=21% Similarity=0.576 Sum_probs=37.6
Q ss_pred CceEEEeCCCCCCh-hhHHH-HHHHhhC--CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTG-EEWIP-IMKAVSG--SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~-~~w~~-~~~~l~~--~~~vi~~Dl~G~G~S~ 979 (983)
+|+|||+|||+++. ..|.. +.+.|.+ +|+||++|++|||.|.
T Consensus 70 ~p~vvliHG~~~~~~~~w~~~l~~~l~~~~~~~Vi~~D~~G~G~S~ 115 (452)
T 1bu8_A 70 RKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSRTE 115 (452)
T ss_dssp SEEEEEECCSCCTTCTTHHHHHHHHHHTTCCEEEEEEECHHHHSSC
T ss_pred CCeEEEECCCCCCCCchHHHHHHHHHHhhCCCEEEEEechhcccCc
Confidence 78999999999999 79998 6677764 7999999999999986
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00033 Score=80.07 Aligned_cols=42 Identities=24% Similarity=0.641 Sum_probs=36.3
Q ss_pred CceEEEeCCCCCCh-hhHHH-HHHHh--hCCCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTG-EEWIP-IMKAV--SGSARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~-~~w~~-~~~~l--~~~~~vi~~Dl~G~G~S~ 979 (983)
+|++||||||+++. ..|.. +.+.| ..+|+||++|+||||.|.
T Consensus 69 ~p~vvliHG~~~s~~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~ 114 (449)
T 1hpl_A 69 RKTRFIIHGFIDKGEESWLSTMCQNMFKVESVNCICVDWKSGSRTA 114 (449)
T ss_dssp SEEEEEECCCCCTTCTTHHHHHHHHHHHHCCEEEEEEECHHHHSSC
T ss_pred CCeEEEEecCCCCCCccHHHHHHHHHHhcCCeEEEEEeCCcccCCc
Confidence 68999999999996 68987 66776 467999999999999986
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0053 Score=67.36 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=89.3
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccC---------C----------CChHHH----HHHHHHHHHHcCCCcEEEEEcC----
Q 041113 657 VEVASIATTLVEEGFTAIKLKVAR---------R----------ADPIKD----AEVIQEVRKKVGHRIELRVDAN---- 709 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~---------~----------~~~~~d----~~~v~~vr~~~g~~~~l~vDaN---- 709 (983)
+++.+.++.+++.||..+.|+.+. + .+++.. ++.+++||+++.-.+.+++-++
T Consensus 144 ~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~ 223 (340)
T 3gr7_A 144 QAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHP 223 (340)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCST
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccC
Confidence 456666777778999999999873 1 123332 6789999999955567777765
Q ss_pred CCCCHHHHHHHHhhcccCCCceeecC--------C--C---ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 710 RNWTYQEALEFGFLIKDCDLQYIEEP--------V--Q---NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 710 ~~~~~~~a~~~~~~l~~~~i~~iEeP--------~--~---~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
++|+.++..++++.|++.++.||+-- . . +.+-.+++++..++||.+.-.+.+.. ....+++.
T Consensus 224 ~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e-----~a~~~L~~ 298 (340)
T 3gr7_A 224 DGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGW-----QAEEILQN 298 (340)
T ss_dssp TSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHH-----HHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCCCHH-----HHHHHHHC
Confidence 47899999999999999999888742 1 1 34455788888899999988877754 34555555
Q ss_pred C-ceEEEE
Q 041113 777 G-IVAIVI 783 (983)
Q Consensus 777 ~-~~~i~~ 783 (983)
| +|.|.+
T Consensus 299 G~aD~V~i 306 (340)
T 3gr7_A 299 GRADLVFL 306 (340)
T ss_dssp TSCSEEEE
T ss_pred CCeeEEEe
Confidence 5 787764
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0013 Score=68.88 Aligned_cols=42 Identities=10% Similarity=0.196 Sum_probs=36.6
Q ss_pred CceEEEeCCCC---CChhhHH-HHHHHhhCCCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFL---GTGEEWI-PIMKAVSGSARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~---~~~~~w~-~~~~~l~~~~~vi~~Dl~G~G~S~ 979 (983)
+|+|||+||++ ++...|. .+.+.|++.|+|+++|+||+|.+.
T Consensus 29 ~~~vv~~HG~~~~~~~~~~~~~~~~~~l~~~~~v~~~d~~~~~~~~ 74 (275)
T 3h04_A 29 KGVIVYIHGGGLMFGKANDLSPQYIDILTEHYDLIQLSYRLLPEVS 74 (275)
T ss_dssp SEEEEEECCSTTTSCCTTCSCHHHHHHHTTTEEEEEECCCCTTTSC
T ss_pred CCEEEEEECCcccCCchhhhHHHHHHHHHhCceEEeeccccCCccc
Confidence 78999999999 7777775 788888888999999999999875
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00092 Score=67.78 Aligned_cols=41 Identities=32% Similarity=0.450 Sum_probs=37.7
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEc-------------CCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISID-------------LPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~D-------------l~G~G~S~ 979 (983)
.| |||+||++++...|..+.+.|..+|+|+++| ++|||++.
T Consensus 17 ~p-vv~lHG~g~~~~~~~~~~~~l~~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~ 70 (209)
T 3og9_A 17 AP-LLLLHSTGGDEHQLVEIAEMIAPSHPILSIRGRINEQGVNRYFKLRGLGGFT 70 (209)
T ss_dssp CC-EEEECCTTCCTTTTHHHHHHHSTTCCEEEECCSBCGGGCCBSSCBCSCTTCS
T ss_pred CC-EEEEeCCCCCHHHHHHHHHhcCCCceEEEecCCcCCCCcccceecccccccc
Confidence 56 9999999999999999999999889999999 88888764
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0027 Score=69.48 Aligned_cols=44 Identities=27% Similarity=0.480 Sum_probs=39.5
Q ss_pred CceEEEeCC---CCCChhhHHHHHHHhhC--CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHG---FLGTGEEWIPIMKAVSG--SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG---~~~~~~~w~~~~~~l~~--~~~vi~~Dl~G~G~S~~~ 981 (983)
.|+|||+|| +.++...|..+...|++ +|+|+++|+||+|++..+
T Consensus 90 ~p~vv~~HGGg~~~g~~~~~~~~~~~La~~~g~~Vv~~Dyrg~~~~~~p 138 (323)
T 3ain_A 90 YGVLVYYHGGGFVLGDIESYDPLCRAITNSCQCVTISVDYRLAPENKFP 138 (323)
T ss_dssp CCEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSCTT
T ss_pred CcEEEEECCCccccCChHHHHHHHHHHHHhcCCEEEEecCCCCCCCCCc
Confidence 689999999 56899999999999986 799999999999998754
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0025 Score=67.90 Aligned_cols=41 Identities=7% Similarity=-0.021 Sum_probs=35.8
Q ss_pred CceEEEeCCCC---CChhhHHHHHHHhhCC-CEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFL---GTGEEWIPIMKAVSGS-ARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~---~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S 978 (983)
.|+|||+||.+ ++...|..+++.|++. |+|+++|+||+|.|
T Consensus 50 ~p~vv~lHGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~~~~ 94 (283)
T 3bjr_A 50 LPAIIIVPGGSYTHIPVAQAESLAMAFAGHGYQAFYLEYTLLTDQ 94 (283)
T ss_dssp EEEEEEECCSTTTCCCHHHHHHHHHHHHTTTCEEEEEECCCTTTC
T ss_pred CcEEEEECCCccccCCccccHHHHHHHHhCCcEEEEEeccCCCcc
Confidence 68999999943 5667899999999765 99999999999987
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00064 Score=69.66 Aligned_cols=42 Identities=26% Similarity=0.510 Sum_probs=39.8
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEE--cCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISI--DLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~--Dl~G~G~S~ 979 (983)
.|+|||+||++++...|..+...|++.|.|+++ |+||+|.|.
T Consensus 38 ~~~vv~~HG~~~~~~~~~~~~~~l~~g~~v~~~~~d~~g~g~s~ 81 (226)
T 2h1i_A 38 KPVLLLLHGTGGNELDLLPLAEIVDSEASVLSVRGNVLENGMPR 81 (226)
T ss_dssp SCEEEEECCTTCCTTTTHHHHHHHHTTSCEEEECCSEEETTEEE
T ss_pred CcEEEEEecCCCChhHHHHHHHHhccCceEEEecCcccCCcchh
Confidence 789999999999999999999999999999999 999999874
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00033 Score=79.85 Aligned_cols=41 Identities=10% Similarity=0.145 Sum_probs=38.3
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-C---EEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-A---RCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~---~vi~~Dl~G~G~S 978 (983)
+++|||+||+++++..|..+++.|.+. | +|+++|+||||.|
T Consensus 22 ~ppVVLlHG~g~s~~~w~~la~~La~~Gy~~~~Via~DlpG~G~S 66 (484)
T 2zyr_A 22 FRPVVFVHGLAGSAGQFESQGMRFAANGYPAEYVKTFEYDTISWA 66 (484)
T ss_dssp CCCEEEECCTTCCGGGGHHHHHHHHHTTCCGGGEEEECCCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHcCCCcceEEEEECCCCCcc
Confidence 789999999999999999999999875 8 8999999999976
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0058 Score=67.77 Aligned_cols=121 Identities=14% Similarity=0.078 Sum_probs=85.2
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChH----HHHHHHHHHHHHcCCC-cEEEEEcC---
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPI----KDAEVIQEVRKKVGHR-IELRVDAN--- 709 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~----~d~~~v~~vr~~~g~~-~~l~vDaN--- 709 (983)
+++++.++.+++.||..|+|+.+.+ .+++ --.+.|++||+++|++ +-+++-++
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~ 240 (365)
T 2gou_A 161 ADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTL 240 (365)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCT
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEcccccc
Confidence 5666777777889999999987531 1222 2357799999999875 44444443
Q ss_pred ----CCCCHHHHHHHHhhcccCCCceeecCCC--------ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC
Q 041113 710 ----RNWTYQEALEFGFLIKDCDLQYIEEPVQ--------NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG 777 (983)
Q Consensus 710 ----~~~~~~~a~~~~~~l~~~~i~~iEeP~~--------~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~ 777 (983)
++++.+++.++++.|++.++.||+-... .++-.+++++.+++||.+...+ +.. ....+++.+
T Consensus 241 ~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi-~~~-----~a~~~l~~g 314 (365)
T 2gou_A 241 NGTVDADPILTYTAAAALLNKHRIVYLHIAEVDWDDAPDTPVSFKRALREAYQGVLIYAGRY-NAE-----KAEQAINDG 314 (365)
T ss_dssp TSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSC-CHH-----HHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcCCCCCccHHHHHHHHHHCCCcEEEeCCC-CHH-----HHHHHHHCC
Confidence 4578899999999999999999986542 1344577888888898888777 543 344455444
Q ss_pred -ceEEEE
Q 041113 778 -IVAIVI 783 (983)
Q Consensus 778 -~~~i~~ 783 (983)
+|.|.+
T Consensus 315 ~aD~V~i 321 (365)
T 2gou_A 315 LADMIGF 321 (365)
T ss_dssp SCSEEEC
T ss_pred Ccceehh
Confidence 777653
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.003 Score=71.82 Aligned_cols=43 Identities=14% Similarity=0.315 Sum_probs=36.3
Q ss_pred CceEEEeCCCCCCh-hhHHHHHHHhh-CCCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTG-EEWIPIMKAVS-GSARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~-~~w~~~~~~l~-~~~~vi~~Dl~G~G~S~~ 980 (983)
.|+|||+||++++. ..|..+...|. .+|+|+++|+||||.|..
T Consensus 193 ~P~vv~~hG~~~~~~~~~~~~~~~l~~~G~~V~~~D~~G~G~s~~ 237 (415)
T 3mve_A 193 HPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSVGYSSK 237 (415)
T ss_dssp EEEEEEECCTTSCGGGGHHHHHHTTGGGTCEEEEECCTTSGGGTT
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEECCCCCCCCCC
Confidence 68999999999995 46666677774 569999999999999975
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0059 Score=67.26 Aligned_cols=122 Identities=9% Similarity=0.030 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHH----HHHHHHHHHHHcCCC-cEEEEEcCC-
Q 041113 656 PVEVASIATTLVEEGFTAIKLKVARR-------------------ADPIK----DAEVIQEVRKKVGHR-IELRVDANR- 710 (983)
Q Consensus 656 ~~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~----d~~~v~~vr~~~g~~-~~l~vDaN~- 710 (983)
.+++++.++.+++.||..|+|+.+.. .+++. -++.|++||+++|++ +-+++-++.
T Consensus 160 i~~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~ 239 (361)
T 3gka_A 160 VAAFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGD 239 (361)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccc
Confidence 35666777778889999999998741 12222 267899999999875 445555542
Q ss_pred ------CCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEE
Q 041113 711 ------NWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAI 781 (983)
Q Consensus 711 ------~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i 781 (983)
.++.+++.++++.|++.++.||+-... ..+-.+++++..++||.+...+ +.. ....+++.+ +|.|
T Consensus 240 ~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~ik~~~~iPvi~~Ggi-t~e-----~a~~~l~~G~aD~V 313 (361)
T 3gka_A 240 AHTMGDSDPAATFGHVARELGRRRIAFLFARESFGGDAIGQQLKAAFGGPFIVNENF-TLD-----SAQAALDAGQADAV 313 (361)
T ss_dssp SSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCCSTTCCHHHHHHHHCSCEEEESSC-CHH-----HHHHHHHTTSCSEE
T ss_pred cCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHcCCCEEEeCCC-CHH-----HHHHHHHcCCccEE
Confidence 234678999999999999999997765 1234567777778888777666 543 344445444 6766
Q ss_pred EE
Q 041113 782 VI 783 (983)
Q Consensus 782 ~~ 783 (983)
.+
T Consensus 314 ~i 315 (361)
T 3gka_A 314 AW 315 (361)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0031 Score=68.24 Aligned_cols=44 Identities=23% Similarity=0.331 Sum_probs=39.4
Q ss_pred CceEEEeCC---CCCChhhHHHHHHHhhC--CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHG---FLGTGEEWIPIMKAVSG--SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG---~~~~~~~w~~~~~~l~~--~~~vi~~Dl~G~G~S~~~ 981 (983)
.|+|||+|| ++++...|..+...|++ .|+|+++|+||+|.+..+
T Consensus 74 ~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~~~~~~~ 122 (310)
T 2hm7_A 74 YPALVYYHGGSWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEHKFP 122 (310)
T ss_dssp EEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSCTT
T ss_pred CCEEEEECCCccccCChhHhHHHHHHHHHhcCCEEEEeCCCCCCCCCCC
Confidence 689999999 88999999999999976 599999999999987654
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00082 Score=73.91 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=39.7
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~ 979 (983)
+|+|||+||++++...|..+.+.|.++|+|+++|+||||.+.
T Consensus 101 ~~~l~~lhg~~~~~~~~~~l~~~L~~~~~v~~~d~~g~~~~~ 142 (329)
T 3tej_A 101 GPTLFCFHPASGFAWQFSVLSRYLDPQWSIIGIQSPRPNGPM 142 (329)
T ss_dssp SCEEEEECCTTSCCGGGGGGGGTSCTTCEEEEECCCTTTSHH
T ss_pred CCcEEEEeCCcccchHHHHHHHhcCCCCeEEEeeCCCCCCCC
Confidence 789999999999999999999999889999999999999764
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0007 Score=77.39 Aligned_cols=42 Identities=24% Similarity=0.610 Sum_probs=35.2
Q ss_pred CceEEEeCCCCCChh-hHHH-HHHHh-hC-CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGE-EWIP-IMKAV-SG-SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~-~w~~-~~~~l-~~-~~~vi~~Dl~G~G~S~ 979 (983)
+|+|||||||+++.. .|.. +.+.| .. +|+||++|+||||.|.
T Consensus 70 ~p~vvliHG~~~s~~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~ 115 (450)
T 1rp1_A 70 KKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQTS 115 (450)
T ss_dssp SEEEEEECCCCCTTCTTHHHHHHHHHTTTCCEEEEEEECHHHHSSC
T ss_pred CCeEEEEccCCCCCCcchHHHHHHHHHhcCCeEEEEEeCccccCCc
Confidence 689999999999876 8987 55655 33 6999999999999875
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0063 Score=67.04 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHHH----HHHHHHHHHHcCCC-cEEEEEcCCC-
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIKD----AEVIQEVRKKVGHR-IELRVDANRN- 711 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~d----~~~v~~vr~~~g~~-~~l~vDaN~~- 711 (983)
+++.+.++.+++.||..|.|+.+.. .+++.. ++.|++||+++|++ +-+++-++..
T Consensus 153 ~~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~ 232 (362)
T 4ab4_A 153 EAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADA 232 (362)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCS
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccc
Confidence 4556667777889999999998741 122222 67899999999875 4445544421
Q ss_pred ------CCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEE
Q 041113 712 ------WTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIV 782 (983)
Q Consensus 712 ------~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~ 782 (983)
++.++++++++.|++.++.||+-... ..+-.+++++..++||.+...+ +.. ....+++.+ +|.|.
T Consensus 233 ~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~ik~~~~iPvi~~Ggi-t~e-----~a~~~l~~g~aD~V~ 306 (362)
T 4ab4_A 233 HDMGDADRAETFTYVARELGKRGIAFICSREREADDSIGPLIKEAFGGPYIVNERF-DKA-----SANAALASGKADAVA 306 (362)
T ss_dssp SSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCCCTTCCHHHHHHHHCSCEEEESSC-CHH-----HHHHHHHTTSCSEEE
T ss_pred cccCCCCcHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHCCCCEEEeCCC-CHH-----HHHHHHHcCCccEEE
Confidence 23678999999999999999997654 1234567777778888776665 543 244444444 67665
Q ss_pred E
Q 041113 783 I 783 (983)
Q Consensus 783 ~ 783 (983)
+
T Consensus 307 i 307 (362)
T 4ab4_A 307 F 307 (362)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0023 Score=65.49 Aligned_cols=36 Identities=28% Similarity=0.534 Sum_probs=33.5
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhh---CCCEEEEEcCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVS---GSARCISIDLP 973 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~---~~~~vi~~Dl~ 973 (983)
+|+|||+||++++...|..+++.|. ..|+|+++|+|
T Consensus 24 ~~~vv~lHG~~~~~~~~~~~~~~l~~~~~g~~v~~~d~p 62 (226)
T 3cn9_A 24 DACIIWLHGLGADRTDFKPVAEALQMVLPSTRFILPQAP 62 (226)
T ss_dssp CEEEEEECCTTCCGGGGHHHHHHHHHHCTTEEEEECCCC
T ss_pred CCEEEEEecCCCChHHHHHHHHHHhhcCCCcEEEeecCC
Confidence 7899999999999999999999998 67999998777
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00078 Score=77.01 Aligned_cols=42 Identities=24% Similarity=0.639 Sum_probs=37.9
Q ss_pred CceEEEeCCCCCCh-hhHHH-HHHHhhC--CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTG-EEWIP-IMKAVSG--SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~-~~w~~-~~~~l~~--~~~vi~~Dl~G~G~S~ 979 (983)
+|+|||+|||+++. ..|.. +.+.|.+ +|+|+++|+||||.|.
T Consensus 70 ~~~vvllHG~~~s~~~~w~~~~~~~l~~~~~~~Vi~~D~~g~g~s~ 115 (432)
T 1gpl_A 70 RKTRFIIHGFTDSGENSWLSDMCKNMFQVEKVNCICVDWKGGSKAQ 115 (432)
T ss_dssp SEEEEEECCTTCCTTSHHHHHHHHHHHHHCCEEEEEEECHHHHTSC
T ss_pred CCeEEEECCCCCCCCchHHHHHHHHHHhcCCcEEEEEECccccCcc
Confidence 78999999999999 68988 7888864 7999999999999986
|
| >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0031 Score=65.91 Aligned_cols=40 Identities=10% Similarity=0.098 Sum_probs=37.7
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGG 977 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~ 977 (983)
+++|||+||++++...|..+.+.|.++|+|+++|+||++.
T Consensus 22 ~~~l~~~hg~~~~~~~~~~~~~~l~~~~~v~~~d~~g~~~ 61 (244)
T 2cb9_A 22 GKNLFCFPPISGFGIYFKDLALQLNHKAAVYGFHFIEEDS 61 (244)
T ss_dssp SSEEEEECCTTCCGGGGHHHHHHTTTTSEEEEECCCCSTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCCceEEEEcCCCHHH
Confidence 6899999999999999999999999889999999999864
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0025 Score=65.06 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=35.6
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGH 975 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~ 975 (983)
+|+|||+||++++...|..+.+.|.+.|+|+++|.||+
T Consensus 30 ~p~vv~lHG~g~~~~~~~~~~~~l~~~~~vv~~d~~~~ 67 (223)
T 3b5e_A 30 RECLFLLHGSGVDETTLVPLARRIAPTATLVAARGRIP 67 (223)
T ss_dssp CCEEEEECCTTBCTTTTHHHHHHHCTTSEEEEECCSEE
T ss_pred CCEEEEEecCCCCHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 68999999999999999999999988999999998874
|
| >1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0029 Score=65.12 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=37.4
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S 978 (983)
+++|+|+||++++...|..+.+.|.+ |+|+++|+||+|..
T Consensus 17 ~~~l~~~hg~~~~~~~~~~~~~~l~~-~~v~~~d~~g~~~~ 56 (230)
T 1jmk_C 17 EQIIFAFPPVLGYGLMYQNLSSRLPS-YKLCAFDFIEEEDR 56 (230)
T ss_dssp SEEEEEECCTTCCGGGGHHHHHHCTT-EEEEEECCCCSTTH
T ss_pred CCCEEEECCCCCchHHHHHHHHhcCC-CeEEEecCCCHHHH
Confidence 67999999999999999999999988 99999999999853
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0015 Score=73.93 Aligned_cols=42 Identities=14% Similarity=0.348 Sum_probs=35.4
Q ss_pred CceEEEeCCCCCC--------hhhHH----HHHHHhhC-CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGT--------GEEWI----PIMKAVSG-SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~--------~~~w~----~~~~~l~~-~~~vi~~Dl~G~G~S~ 979 (983)
++||||+||++++ ...|. .+.+.|.+ .|+|+++|+||||.|.
T Consensus 52 ~~pVVLvHG~~g~~~~~~~~~~~~W~~~~~~l~~~L~~~Gy~Via~Dl~G~G~S~ 106 (431)
T 2hih_A 52 KDPFVFVHGFTGFVGEVAAKGENYWGGTKANLRNHLRKAGYETYEASVSALASNH 106 (431)
T ss_dssp SSCEEEECCTTCCCGGGSCTTCCTTTTTTCCHHHHHHHTTCCEEEECCCSSSCHH
T ss_pred CCeEEEECCCCCCcccccccchhhhhccHHHHHHHHHhCCCEEEEEcCCCCCCCc
Confidence 6899999999874 35685 58898865 5999999999999875
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0022 Score=72.40 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=35.7
Q ss_pred CceEEEeCCCCCChhh-----------HHHHHHHhh-CCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEE-----------WIPIMKAVS-GSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~-----------w~~~~~~l~-~~~~vi~~Dl~G~G~S~~~ 981 (983)
.|.|||+||++++... |..++..|. ..|+|+++|+||||.|+.+
T Consensus 79 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~V~~~D~~G~G~s~~~ 134 (397)
T 3h2g_A 79 YPLLGWGHPTEALRAQEQAKEIRDAKGDDPLVTRLASQGYVVVGSDYLGLGKSNYA 134 (397)
T ss_dssp EEEEEEECCCCCBTTCCHHHHHHHTTTCSHHHHTTGGGTCEEEEECCTTSTTCCCS
T ss_pred CcEEEEeCCCcCCCCcccccccccccchHHHHHHHHHCCCEEEEecCCCCCCCCCC
Confidence 5788999999998665 556777775 5699999999999999643
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0075 Score=68.64 Aligned_cols=62 Identities=8% Similarity=-0.044 Sum_probs=42.5
Q ss_pred EEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 914 LNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 914 ~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
+.+...++...++.. .+.+. .|+||++||++++.. ..+...|++ .|+|+++|++|||.+...
T Consensus 138 ~~~~~~~l~~~l~~P-~~~~~---~P~Vv~~hG~~~~~~--~~~a~~La~~Gy~V~a~D~rG~g~~~~~ 200 (422)
T 3k2i_A 138 QSVRAGRVRATLFLP-PGPGP---FPGIIDIFGIGGGLL--EYRASLLAGHGFATLALAYYNFEDLPNN 200 (422)
T ss_dssp EEEEETTEEEEEEEC-SSSCC---BCEEEEECCTTCSCC--CHHHHHHHTTTCEEEEEECSSSTTSCSS
T ss_pred EEEeCCcEEEEEEcC-CCCCC---cCEEEEEcCCCcchh--HHHHHHHHhCCCEEEEEccCCCCCCCCC
Confidence 344555555544433 33322 689999999988744 445777865 499999999999987653
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0058 Score=68.57 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=35.0
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhh-CCCEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVS-GSARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~-~~~~vi~~Dl~G~G~S 978 (983)
.|+||++||++++...|......|. .+|.|+++|+||||.|
T Consensus 152 ~P~vl~~hG~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~G~s 193 (386)
T 2jbw_A 152 HPAVIMLGGLESTKEESFQMENLVLDRGMATATFDGPGQGEM 193 (386)
T ss_dssp EEEEEEECCSSCCTTTTHHHHHHHHHTTCEEEEECCTTSGGG
T ss_pred CCEEEEeCCCCccHHHHHHHHHHHHhCCCEEEEECCCCCCCC
Confidence 6899999999999887666666664 5699999999999998
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0082 Score=65.70 Aligned_cols=42 Identities=17% Similarity=0.069 Sum_probs=34.8
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~ 979 (983)
.|.|||+||++++...|.........+|.|+++|+||+|.|.
T Consensus 95 ~p~vv~~HG~g~~~~~~~~~~~l~~~G~~v~~~d~rG~g~s~ 136 (337)
T 1vlq_A 95 LPCVVQYIGYNGGRGFPHDWLFWPSMGYICFVMDTRGQGSGW 136 (337)
T ss_dssp EEEEEECCCTTCCCCCGGGGCHHHHTTCEEEEECCTTCCCSS
T ss_pred ccEEEEEcCCCCCCCCchhhcchhhCCCEEEEecCCCCCCcc
Confidence 588999999999877766555555678999999999999764
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0067 Score=61.95 Aligned_cols=33 Identities=24% Similarity=0.539 Sum_probs=31.0
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEE
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISI 970 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~ 970 (983)
+|+|||+||++++...|..+.+.|.+ .|+|+++
T Consensus 23 ~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~ 56 (232)
T 1fj2_A 23 TAAVIFLHGLGDTGHGWAEAFAGIRSSHIKYICP 56 (232)
T ss_dssp SEEEEEECCSSSCHHHHHHHHHTTCCTTEEEEEC
T ss_pred CceEEEEecCCCccchHHHHHHHHhcCCcEEEec
Confidence 68999999999999999999999986 7999998
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.013 Score=61.98 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=35.8
Q ss_pred CceEEEeCCCCCChhhHHHH---HHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPI---MKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~---~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
.|+|||+||++++...|... ...+.+ .|.|+++|+||||.|..
T Consensus 44 ~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~g~G~s~~ 90 (278)
T 3e4d_A 44 CPVVWYLSGLTCTHANVMEKGEYRRMASELGLVVVCPDTSPRGNDVP 90 (278)
T ss_dssp EEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEECCSSCCSTTSC
T ss_pred CCEEEEEcCCCCCccchhhcccHHHHHhhCCeEEEecCCcccCcccc
Confidence 58999999999999999884 344444 69999999999998854
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0089 Score=63.14 Aligned_cols=43 Identities=9% Similarity=0.001 Sum_probs=36.3
Q ss_pred CceEEEeCC---CCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHG---FLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG---~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
.|.|||+|| ..++...|..+...|.+ .|.|+++|+||||.|..
T Consensus 43 ~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~ 89 (276)
T 3hxk_A 43 FPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYTVMNKGTN 89 (276)
T ss_dssp BCEEEEECCSTTTSCCGGGSHHHHHHHHHTTCEEEEEECCCTTSCCC
T ss_pred CCEEEEEcCCccccCCchhhHHHHHHHHHCCCEEEEecCccCCCcCC
Confidence 689999999 34667788999888864 59999999999999753
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.018 Score=64.56 Aligned_cols=121 Identities=13% Similarity=0.121 Sum_probs=82.5
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccC---------C----------CChHH----HHHHHHHHHHHcCCC-cEEEEEcC---
Q 041113 657 VEVASIATTLVEEGFTAIKLKVAR---------R----------ADPIK----DAEVIQEVRKKVGHR-IELRVDAN--- 709 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~---------~----------~~~~~----d~~~v~~vr~~~g~~-~~l~vDaN--- 709 (983)
+++++.++.+++.||..|.|+.+. + .+++. -++.|++||+++|++ +-+++-++
T Consensus 171 ~~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~ 250 (402)
T 2hsa_B 171 EDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDH 250 (402)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCS
T ss_pred HHHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 567777888888999999999863 1 12332 367899999999865 33443332
Q ss_pred ----CCCCHHHHHHHHhhcccCC------Cceeec-----------CC-----C--ChHHHHHHHhhcCCcEEeCCCccC
Q 041113 710 ----RNWTYQEALEFGFLIKDCD------LQYIEE-----------PV-----Q--NEEDIIKYCEESGLPVALDETIDK 761 (983)
Q Consensus 710 ----~~~~~~~a~~~~~~l~~~~------i~~iEe-----------P~-----~--~~~~~~~l~~~~~ipIa~dEs~~~ 761 (983)
.+++.++++++++.|++.+ +.||+- |. . +++-.+++++..++||.+...+ +
T Consensus 251 ~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~iPvi~~G~i-~ 329 (402)
T 2hsa_B 251 LDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSGGY-T 329 (402)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCSSCEEEESSC-C
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHCCCCEEEeCCC-C
Confidence 3467789999999999998 888764 21 0 1222456788888998888777 6
Q ss_pred cCCChHHHHHhhcCCC-ceEEEE
Q 041113 762 FQKDPLNMLEKYAHPG-IVAIVI 783 (983)
Q Consensus 762 ~~~~~~~~~~~~~~~~-~~~i~~ 783 (983)
.. ....+++.+ +|.|.+
T Consensus 330 ~~-----~a~~~l~~g~aD~V~i 347 (402)
T 2hsa_B 330 RE-----LGIEAVAQGDADLVSY 347 (402)
T ss_dssp HH-----HHHHHHHTTSCSEEEE
T ss_pred HH-----HHHHHHHCCCCceeee
Confidence 43 344455444 787664
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.022 Score=62.06 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=38.9
Q ss_pred CceEEEeCCCC---CChhhHHHHHHHhhC--CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFL---GTGEEWIPIMKAVSG--SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~---~~~~~w~~~~~~l~~--~~~vi~~Dl~G~G~S~~~ 981 (983)
+|.|||+||.+ ++...|..+...|+. +|.|+++|+|+.+.+..+
T Consensus 87 ~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~V~~~dyr~~p~~~~~ 135 (326)
T 3ga7_A 87 QATLYYLHGGGFILGNLDTHDRIMRLLARYTGCTVIGIDYSLSPQARYP 135 (326)
T ss_dssp SCEEEEECCSTTTSCCTTTTHHHHHHHHHHHCSEEEEECCCCTTTSCTT
T ss_pred CcEEEEECCCCcccCChhhhHHHHHHHHHHcCCEEEEeeCCCCCCCCCC
Confidence 68999999999 899999999999987 799999999998776543
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0076 Score=65.70 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=36.8
Q ss_pred eEEEeCC--CCCChhhHHHHHHHhhCCCEEEEEcCCCCCCC
Q 041113 940 ILLFLHG--FLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978 (983)
Q Consensus 940 ~lv~lHG--~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S 978 (983)
+|+|+|| ++++...|..+...|..+|+|+++|+||||.|
T Consensus 91 ~l~~~hg~g~~~~~~~~~~l~~~L~~~~~v~~~d~~G~g~~ 131 (319)
T 2hfk_A 91 VLVGCTGTAANGGPHEFLRLSTSFQEERDFLAVPLPGYGTG 131 (319)
T ss_dssp EEEEECCCCTTCSTTTTHHHHHTTTTTCCEEEECCTTCCBC
T ss_pred cEEEeCCCCCCCcHHHHHHHHHhcCCCCceEEecCCCCCCC
Confidence 9999998 67888999999999998999999999999997
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.013 Score=65.20 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=36.4
Q ss_pred CceEEEeCCCC---CChh--hHHHHHHHhh-CCCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFL---GTGE--EWIPIMKAVS-GSARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~---~~~~--~w~~~~~~l~-~~~~vi~~Dl~G~G~S~ 979 (983)
.|+|||+||.+ ++.. .|..+...|+ .+|.|+++|+||+|.|+
T Consensus 109 ~p~vv~iHGgg~~~g~~~~~~~~~~~~~la~~g~~vv~~d~r~~gg~~ 156 (361)
T 1jkm_A 109 LPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTAE 156 (361)
T ss_dssp EEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEETT
T ss_pred CeEEEEEcCCccccCCCcccchhHHHHHHHhCCCEEEEEecCCCCCCC
Confidence 58999999988 7888 8999999997 67999999999996543
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0064 Score=63.75 Aligned_cols=42 Identities=10% Similarity=0.070 Sum_probs=36.3
Q ss_pred CceEEEeCCC---CCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGF---LGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~---~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~ 979 (983)
+|+|||+||. +++...|..+.+.|.+. |+|+++|+||+|..+
T Consensus 63 ~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~~~~~~~ 108 (262)
T 2pbl_A 63 VGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVR 108 (262)
T ss_dssp SEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSC
T ss_pred CCEEEEEcCcccccCChHHHHHHHHHHHhCCCEEEEeCCCCCCCCC
Confidence 7899999994 48889999999999654 999999999998653
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.012 Score=63.53 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=31.6
Q ss_pred CceEEEeCCCCCChhhH-HHHHHHhhC-CCEEEEEcCC
Q 041113 938 DNILLFLHGFLGTGEEW-IPIMKAVSG-SARCISIDLP 973 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w-~~~~~~l~~-~~~vi~~Dl~ 973 (983)
.|+|||+||++.+...| ..+.+.|.+ .|.|+++|+|
T Consensus 54 ~p~vv~lHG~~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 91 (304)
T 3d0k_A 54 RPVVVVQHGVLRNGADYRDFWIPAADRHKLLIVAPTFS 91 (304)
T ss_dssp SCEEEEECCTTCCHHHHHHHTHHHHHHHTCEEEEEECC
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHHHCCcEEEEeCCc
Confidence 68999999999999988 666777764 5999999999
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.013 Score=61.78 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=36.4
Q ss_pred CceEEEeCCCC-----CChhhHHHHHHHh-----hCCCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFL-----GTGEEWIPIMKAV-----SGSARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~-----~~~~~w~~~~~~l-----~~~~~vi~~Dl~G~G~S~~ 980 (983)
.|+|||+||.+ ++...|..+++.| ..+|+|+++|+|+.+.+..
T Consensus 41 ~p~vv~lHGgg~~~g~~~~~~~~~~~~~L~~~a~~~g~~vi~~d~r~~~~~~~ 93 (273)
T 1vkh_A 41 REAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEITN 93 (273)
T ss_dssp CEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTSCT
T ss_pred CeEEEEECCCcccCCcCChHHHHHHHHHHhhhhccCCcEEEEeecccCCCCCC
Confidence 68999999954 4678999999999 5679999999999887543
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0023 Score=70.38 Aligned_cols=44 Identities=7% Similarity=0.142 Sum_probs=37.4
Q ss_pred CceEEEeCCCCCC----------hhhH----HHHHHHhhC-CCE---EEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGT----------GEEW----IPIMKAVSG-SAR---CISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~----------~~~w----~~~~~~l~~-~~~---vi~~Dl~G~G~S~~~ 981 (983)
++||||+||++++ ...| ..+++.|.+ .|+ |+++|+||||.|+.+
T Consensus 40 ~~pVVlvHG~~~~~~~~~~~~~~~~~w~~~~~~l~~~L~~~Gy~~~~V~~~D~~g~G~S~~~ 101 (342)
T 2x5x_A 40 KTPVIFIHGNGDNAISFDMPPGNVSGYGTPARSVYAELKARGYNDCEIFGVTYLSSSEQGSA 101 (342)
T ss_dssp SCCEEEECCTTCCGGGGGCCCCCCTTTCCCSSCHHHHHHHTTCCTTSEEEECCSCHHHHTCG
T ss_pred CCeEEEECCcCCCcccccccccccccccccHHHHHHHHHhCCCCCCeEEEEeCCCCCccCCc
Confidence 6799999999994 5689 899999876 487 999999999987643
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0083 Score=67.26 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=38.5
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~ 979 (983)
.|.|||+||++++...|..+.+.|++. |.|+++|+||+|.|.
T Consensus 98 ~P~Vv~~HG~~~~~~~~~~~a~~La~~Gy~V~~~d~~g~g~s~ 140 (383)
T 3d59_A 98 YPLVVFSHGLGAFRTLYSAIGIDLASHGFIVAAVEHRDRSASA 140 (383)
T ss_dssp EEEEEEECCTTCCTTTTHHHHHHHHHTTCEEEEECCCSSCSSE
T ss_pred CCEEEEcCCCCCCchHHHHHHHHHHhCceEEEEeccCCCCccc
Confidence 578999999999999999999999775 999999999999874
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0065 Score=61.88 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=35.9
Q ss_pred CCceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCC
Q 041113 937 QDNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGG 977 (983)
Q Consensus 937 ~~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~ 977 (983)
.++.||||||+|++...|..+.+.|.. .+.|++||.+|++.
T Consensus 21 a~~~Vv~lHG~G~~~~~~~~l~~~l~~~~~~v~~P~~~g~~w 62 (210)
T 4h0c_A 21 AKKAVVMLHGRGGTAADIISLQKVLKLDEMAIYAPQATNNSW 62 (210)
T ss_dssp CSEEEEEECCTTCCHHHHHGGGGTSSCTTEEEEEECCGGGCS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHhCCCCeEEEeecCCCCCc
Confidence 367899999999999999999888864 59999999999763
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.033 Score=60.92 Aligned_cols=73 Identities=11% Similarity=0.076 Sum_probs=46.5
Q ss_pred eeEEEEEEcc-cCceeEEEEeecCCccCCCCceEEEeCCCCC---Ch--hhHHHHHHHhh--CCCEEEEEcCCCCCCCCC
Q 041113 909 VLRYQLNVNS-KDFCSFIKVQEIGQRIDIQDNILLFLHGFLG---TG--EEWIPIMKAVS--GSARCISIDLPGHGGSKM 980 (983)
Q Consensus 909 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~---~~--~~w~~~~~~l~--~~~~vi~~Dl~G~G~S~~ 980 (983)
+..+.+.+.. .++.++++............|+|||+||.+. +. ..|..++..|+ .+|.|+++|+||++.+..
T Consensus 53 v~~~~v~~~~~~~~~~~~~~P~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~~~la~~~g~~vv~~d~rg~~~~~~ 132 (338)
T 2o7r_A 53 VLTKDLALNPLHNTFVRLFLPRHALYNSAKLPLVVYFHGGGFILFSAASTIFHDFCCEMAVHAGVVIASVDYRLAPEHRL 132 (338)
T ss_dssp EEEEEEEEETTTTEEEEEEEEGGGGGSSCCEEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTCEEEEEECCCTTTTCT
T ss_pred EEEEEEEecCCCCeEEEEEeCCCCCcCCCCceEEEEEcCCcCcCCCCCchhHHHHHHHHHHHCCcEEEEecCCCCCCCCC
Confidence 4455555543 3455555444322000012588999999772 22 34899999886 469999999999998764
Q ss_pred C
Q 041113 981 Q 981 (983)
Q Consensus 981 ~ 981 (983)
+
T Consensus 133 ~ 133 (338)
T 2o7r_A 133 P 133 (338)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.013 Score=61.31 Aligned_cols=38 Identities=5% Similarity=0.092 Sum_probs=34.8
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGH 975 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~ 975 (983)
.|.|||+||++++...|..+.+.|++ .|+|+++|+||.
T Consensus 49 ~p~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d~~~s 87 (258)
T 2fx5_A 49 HPVILWGNGTGAGPSTYAGLLSHWASHGFVVAAAETSNA 87 (258)
T ss_dssp EEEEEEECCTTCCGGGGHHHHHHHHHHTCEEEEECCSCC
T ss_pred ceEEEEECCCCCCchhHHHHHHHHHhCCeEEEEecCCCC
Confidence 58899999999999999999999976 599999999974
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.02 Score=61.53 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=35.5
Q ss_pred CceEEEeCC---CCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHG---FLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG---~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~ 979 (983)
.|.|||+|| ..++...|..+...|.+ .|.|+++|+||+|.+.
T Consensus 82 ~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~r~~~~~~ 127 (303)
T 4e15_A 82 APLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLCPQVT 127 (303)
T ss_dssp CCEEEEECCSTTTSCCGGGSCTTHHHHHHTTCEEEEECCCCTTTSC
T ss_pred CCEEEEECCCcCcCCChhHHHHHHHHHHhCCCEEEEecCCCCCCCC
Confidence 789999999 55777888888887765 5999999999999864
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.041 Score=59.82 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=37.8
Q ss_pred Cce-EEEeCCCC---CChhhHHHHHHHhhC--CCEEEEEcCCCCCCCCCC
Q 041113 938 DNI-LLFLHGFL---GTGEEWIPIMKAVSG--SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~-lv~lHG~~---~~~~~w~~~~~~l~~--~~~vi~~Dl~G~G~S~~~ 981 (983)
+++ |||+||.+ ++...|..+...|.. .|.|+++|+|+++.+..+
T Consensus 79 ~~~~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~dyr~~~~~~~~ 128 (322)
T 3k6k_A 79 GAAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYRLAPENPFP 128 (322)
T ss_dssp CSCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTCEEEEECCCCTTTSCTT
T ss_pred CCeEEEEEcCCcccCCChHHHHHHHHHHHHhcCCEEEEeeCCCCCCCCCc
Confidence 577 99999966 888999999998875 799999999999887543
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.028 Score=63.16 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=35.5
Q ss_pred CceEEEeCCCCCChhhH--------------H----HHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEW--------------I----PIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w--------------~----~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
.|.||++||++++...+ + .+...|++ .|.|+++|+||||.|..+
T Consensus 114 ~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~G~~Vl~~D~rg~G~s~~~ 176 (391)
T 3g8y_A 114 VPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKEGYVAVAVDNAAAGEASDL 176 (391)
T ss_dssp EEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTTTCEEEECCCTTSGGGCSS
T ss_pred CCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHCCCEEEEecCCCccccCCc
Confidence 58999999999987643 2 45677765 499999999999998753
|
| >3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.021 Score=60.97 Aligned_cols=37 Identities=11% Similarity=0.215 Sum_probs=34.3
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHG 976 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G 976 (983)
+++|||+||+++++..|..+.+.|+ ++|+++|++|..
T Consensus 24 ~~~l~~~hg~~~~~~~~~~~~~~L~--~~v~~~d~~~~~ 60 (283)
T 3tjm_A 24 ERPLFLVHPIEGSTTVFHSLASRLS--IPTYGLQCTRAA 60 (283)
T ss_dssp SCCEEEECCTTCCSGGGHHHHHHCS--SCEEEECCCTTS
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcC--ceEEEEecCCCC
Confidence 7899999999999999999999997 999999998743
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.041 Score=62.97 Aligned_cols=62 Identities=8% Similarity=-0.074 Sum_probs=42.6
Q ss_pred EEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 914 LNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 914 ~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
+.+...++...++.. .+.+. .|.||++||++++...| ....|++ .|+|+++|+||||.+..+
T Consensus 154 ~~~~~g~l~~~l~~P-~~~~~---~P~Vv~lhG~~~~~~~~--~a~~La~~Gy~Vla~D~rG~~~~~~~ 216 (446)
T 3hlk_A 154 EPVRVGRVRGTLFLP-PEPGP---FPGIVDMFGTGGGLLEY--RASLLAGKGFAVMALAYYNYEDLPKT 216 (446)
T ss_dssp EEEEETTEEEEEEEC-SSSCC---BCEEEEECCSSCSCCCH--HHHHHHTTTCEEEEECCSSSTTSCSC
T ss_pred EEecCCeEEEEEEeC-CCCCC---CCEEEEECCCCcchhhH--HHHHHHhCCCEEEEeccCCCCCCCcc
Confidence 344455555544433 33322 68999999999875444 3677765 599999999999988754
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.05 Score=61.25 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=35.3
Q ss_pred CceEEEeCCCCCChhhHH------------------HHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWI------------------PIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~------------------~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
.|.||++||++++...+. .+...|++ .|.|+++|+||||.|..
T Consensus 119 ~P~Vv~~HG~g~~~~~~~~~~g~~~~~~~~y~~~~~~~a~~la~~Gy~Vl~~D~rG~G~s~~ 180 (398)
T 3nuz_A 119 VPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKEGYIAVAVDNPAAGEASD 180 (398)
T ss_dssp EEEEEEECCTTCCHHHHHTCCCSSSTTCCSTTCTTTCHHHHHHTTTCEEEEECCTTSGGGCS
T ss_pred ccEEEEEcCCCCCcccccccccccccccccccchHHHHHHHHHHCCCEEEEecCCCCCcccc
Confidence 589999999999877543 46677765 49999999999999863
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.055 Score=58.90 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=34.5
Q ss_pred CceEEEeCCCC---CChhhHHHHHHHhhC--CCEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFL---GTGEEWIPIMKAVSG--SARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~---~~~~~w~~~~~~l~~--~~~vi~~Dl~G~G~S 978 (983)
+|+|||+||.+ ++...|..++..|+. +|+|+++|+||.+..
T Consensus 96 ~p~vv~lHGgg~~~~~~~~~~~~~~~la~~~g~~vi~~D~r~~~~~ 141 (326)
T 3d7r_A 96 DKKILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYPKTPEF 141 (326)
T ss_dssp SSEEEEECCSTTTSCCCHHHHHHHHHHHHHHCSEEEEECCCCTTTS
T ss_pred CeEEEEECCCcccCCCCHHHHHHHHHHHHHhCCEEEEEeCCCCCCC
Confidence 68999999944 577889999988864 699999999997764
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.089 Score=57.85 Aligned_cols=44 Identities=11% Similarity=0.173 Sum_probs=35.1
Q ss_pred CceEEEeCCCCC---Chh--hHHHHHHHhh--CCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLG---TGE--EWIPIMKAVS--GSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~---~~~--~w~~~~~~l~--~~~~vi~~Dl~G~G~S~~~ 981 (983)
.|+|||+||.+. +.. .|..+...|+ .+|.|+++|+||++.+..+
T Consensus 113 ~p~vv~~HGgg~~~g~~~~~~~~~~~~~la~~~g~~vv~~d~rg~~~~~~~ 163 (351)
T 2zsh_A 113 VPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYP 163 (351)
T ss_dssp CEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTSEEEEECCCCTTTSCTT
T ss_pred ceEEEEECCCcCcCCCCcchhHHHHHHHHHHHcCCEEEEecCCCCCCCCCc
Confidence 689999999553 333 4899999997 4699999999999887543
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.078 Score=57.62 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=37.1
Q ss_pred CceEEEeCCCC---CChhhHHHHHHHhhC--CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFL---GTGEEWIPIMKAVSG--SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~---~~~~~w~~~~~~l~~--~~~vi~~Dl~G~G~S~~~ 981 (983)
.|+|||+||.+ ++...|..+...|.. .|.|+++|+|+.+.+..+
T Consensus 80 ~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~~~ 128 (322)
T 3fak_A 80 GKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEHPFP 128 (322)
T ss_dssp TCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTSEEEEECCCCTTTSCTT
T ss_pred ccEEEEEcCCccccCChHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCC
Confidence 68999999966 788899999888865 799999999998776543
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.03 Score=57.41 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=33.8
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC------CEEEEEcCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS------ARCISIDLPGH 975 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~------~~vi~~Dl~G~ 975 (983)
.|+|||+||++++...|..+...|... |+|+++|.|++
T Consensus 23 ~p~vv~lHG~g~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~ 66 (239)
T 3u0v_A 23 SASLIFLHGSGDSGQGLRMWIKQVLNQDLTFQHIKIIYPTAPPR 66 (239)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHTSCCCCSSEEEEEECCCEE
T ss_pred CcEEEEEecCCCchhhHHHHHHHHhhcccCCCceEEEeCCCCcc
Confidence 689999999999999999999988754 99999998754
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.048 Score=58.25 Aligned_cols=97 Identities=19% Similarity=0.165 Sum_probs=77.3
Q ss_pred CHHHHHHHHhhcccCCCceeecCCCC---hHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcC
Q 041113 713 TYQEALEFGFLIKDCDLQYIEEPVQN---EEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIG 789 (983)
Q Consensus 713 ~~~~a~~~~~~l~~~~i~~iEeP~~~---~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~G 789 (983)
+.+..++-.+.|++.|-+.+.-.+++ .+.+..+++++++||.+|-++.. +.+...++.|+|.+.++|+-+|
T Consensus 44 D~~atv~Qi~~l~~aG~diVRvavp~~~~a~al~~I~~~~~vPlvaDiHf~~------~lal~a~e~G~dklRINPGNig 117 (366)
T 3noy_A 44 DVEATLNQIKRLYEAGCEIVRVAVPHKEDVEALEEIVKKSPMPVIADIHFAP------SYAFLSMEKGVHGIRINPGNIG 117 (366)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHCSSCEEEECCSCH------HHHHHHHHTTCSEEEECHHHHS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHhcCCCCEEEeCCCCH------HHHHHHHHhCCCeEEECCcccC
Confidence 66677777777777888888888874 34567788899999999987543 2344556678999999999999
Q ss_pred CHHHHHHHHHHHHHcCCcEEeCCCCc
Q 041113 790 GFENAGLIARWAQRHGKMAVVSAAFE 815 (983)
Q Consensus 790 Gl~~~~~~~~~A~~~gi~~~~~~~~e 815 (983)
+-....++++.|+++|+++.++-+++
T Consensus 118 ~~~~~~~vv~~ak~~~~piRIGvN~G 143 (366)
T 3noy_A 118 KEEIVREIVEEAKRRGVAVRIGVNSG 143 (366)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEEEGG
T ss_pred chhHHHHHHHHHHHcCCCEEEecCCc
Confidence 99999999999999999998874443
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.062 Score=56.82 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=33.9
Q ss_pred CceEEEeCCCC---CChhhH-HHHHHHhhCC-CEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFL---GTGEEW-IPIMKAVSGS-ARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~---~~~~~w-~~~~~~l~~~-~~vi~~Dl~G~G~S 978 (983)
+|+|||+||.| ++...| ..+...+.+. |+|+++|+|+...+
T Consensus 27 ~p~iv~~HGGg~~~g~~~~~~~~~~~~l~~~g~~Vi~vdYrlaPe~ 72 (274)
T 2qru_A 27 TNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLLAPNT 72 (274)
T ss_dssp CEEEEEECCSTTTSCCGGGCCHHHHHHHHTTTEEEEEECCCCTTTS
T ss_pred CcEEEEEeCccccCCChhhchHHHHHHHHHCCCEEEEeCCCCCCCC
Confidence 68999999988 677766 6677778764 99999999998765
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.085 Score=55.46 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=32.9
Q ss_pred CceEEEeCCCCCChhhHHHH---HHHhh-CCCEEEEEcC--CCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPI---MKAVS-GSARCISIDL--PGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~---~~~l~-~~~~vi~~Dl--~G~G~S 978 (983)
.|.|||+||++++...|... ...+. ..|.|+++|. ||+|.+
T Consensus 45 ~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~rG~~~~ 91 (282)
T 3fcx_A 45 CPALYWLSGLTCTEQNFISKSGYHQSASEHGLVVIAPDTSPRGCNIK 91 (282)
T ss_dssp EEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEEECSCSSCCCC-
T ss_pred CCEEEEEcCCCCCccchhhcchHHHHhhcCCeEEEEeccccCccccc
Confidence 58899999999999999876 45554 4699999999 766653
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=94.13 E-value=0.071 Score=57.92 Aligned_cols=135 Identities=16% Similarity=0.185 Sum_probs=95.2
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCC--------------ChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRA--------------DPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEAL 718 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~--------------~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~ 718 (983)
+.+++.+.+.++.+.+. |..|-|.+|.+. +++.-.+.++++|++++ +.+.+.-..+|+.++..
T Consensus 67 g~~~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~--~pv~vKir~G~~~~~~~ 143 (318)
T 1vhn_A 67 GSEPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVS--GKFSVKTRLGWEKNEVE 143 (318)
T ss_dssp CSCHHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCS--SEEEEEEESCSSSCCHH
T ss_pred CCCHHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhC--CCEEEEecCCCChHHHH
Confidence 45789999999998888 999999988641 23445678999999985 67777777788776666
Q ss_pred HHHhhcccCCCcee-------ecC---CCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCC
Q 041113 719 EFGFLIKDCDLQYI-------EEP---VQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSV 787 (983)
Q Consensus 719 ~~~~~l~~~~i~~i-------EeP---~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~ 787 (983)
++++.+++.++.+| ++- .++++-++++++ ++||.++-.+.+..| ...+++ .|+|.+.+=-..
T Consensus 144 ~~a~~l~~~G~d~i~v~g~~~~~~~~~~~~~~~i~~i~~--~ipVi~~GgI~s~~d-----a~~~l~~~gad~V~iGR~~ 216 (318)
T 1vhn_A 144 EIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK--RIPTFVSGDIFTPED-----AKRALEESGCDGLLVARGA 216 (318)
T ss_dssp HHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC--SSCEEEESSCCSHHH-----HHHHHHHHCCSEEEESGGG
T ss_pred HHHHHHHHhCCCEEEEcCCCccccCCCCcCHHHHHHHHc--CCeEEEECCcCCHHH-----HHHHHHcCCCCEEEECHHH
Confidence 88899999888877 331 124555566666 899999888887653 444444 578888875444
Q ss_pred cCCHHHHHHH
Q 041113 788 IGGFENAGLI 797 (983)
Q Consensus 788 ~GGl~~~~~~ 797 (983)
+....-..++
T Consensus 217 l~~P~l~~~~ 226 (318)
T 1vhn_A 217 IGRPWIFKQI 226 (318)
T ss_dssp TTCTTHHHHH
T ss_pred HhCcchHHHH
Confidence 4444433333
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.28 Score=55.10 Aligned_cols=77 Identities=21% Similarity=0.349 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CCh-HH----HHHHHHHHHHHc----CCCcEEEEEc
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADP-IK----DAEVIQEVRKKV----GHRIELRVDA 708 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~-~~----d~~~v~~vr~~~----g~~~~l~vDa 708 (983)
+++.+.++.+++.||..|-|+.+.+ .+. +. =++.|++||+++ |+++.+.+=-
T Consensus 170 ~~F~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRi 249 (419)
T 3l5a_A 170 QQYRDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRA 249 (419)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEec
Confidence 3455666777789999999998641 123 22 257889999998 6776554432
Q ss_pred CC--------CCCHHHHHHHHhhccc-CCCceee
Q 041113 709 NR--------NWTYQEALEFGFLIKD-CDLQYIE 733 (983)
Q Consensus 709 N~--------~~~~~~a~~~~~~l~~-~~i~~iE 733 (983)
+. +|+.++++++++.|++ .++.||+
T Consensus 250 s~~~~~~~~~G~~~ed~~~la~~L~~~~Gvd~I~ 283 (419)
T 3l5a_A 250 TPEETRGSDLGYTIDEFNQLIDWVMDVSNIQYLA 283 (419)
T ss_dssp CSCEEETTEEEECHHHHHHHHHHHHHHSCCCCEE
T ss_pred ccccccCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Confidence 22 7999999999999999 8888876
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.12 Score=55.96 Aligned_cols=43 Identities=9% Similarity=0.028 Sum_probs=36.2
Q ss_pred CceEEEeCCCC---CChhhHHHHHHHhhC--CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFL---GTGEEWIPIMKAVSG--SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~---~~~~~w~~~~~~l~~--~~~vi~~Dl~G~G~S~~ 980 (983)
.|.|||+||.| ++...|..++..|.. +|.|+++|+|+.+.+..
T Consensus 85 ~p~vv~~HGgG~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~~ 132 (317)
T 3qh4_A 85 APVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAPEHPY 132 (317)
T ss_dssp EEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSCT
T ss_pred CcEEEEECCCcCccCChHHHHHHHHHHHHHcCCEEEEecCCCCCCCCC
Confidence 68999999877 677889998888863 69999999998877654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=93.52 E-value=0.043 Score=64.98 Aligned_cols=41 Identities=12% Similarity=0.285 Sum_probs=35.1
Q ss_pred CceEEEeCCCCCC--hhhHHHHHHHhhCC-CEEEEEcCCC---CCCC
Q 041113 938 DNILLFLHGFLGT--GEEWIPIMKAVSGS-ARCISIDLPG---HGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~--~~~w~~~~~~l~~~-~~vi~~Dl~G---~G~S 978 (983)
.|.|||+||.+.+ ...|..+...|++. |.|+++|+|| ||+|
T Consensus 360 ~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~~~G~s 406 (582)
T 3o4h_A 360 GPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEE 406 (582)
T ss_dssp EEEEEEECSSSSCCCCSSCCHHHHHHHHTTCEEEEECCTTCSSSCHH
T ss_pred CcEEEEECCCcccccccccCHHHHHHHhCCCEEEEeccCCCCCCchh
Confidence 6899999998776 78899999988655 9999999999 6654
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.67 Score=50.81 Aligned_cols=125 Identities=12% Similarity=0.155 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCC--------------ChHHHHHHHHHHHHHcCCCcEE--EEEcCCCCCHHH
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRA--------------DPIKDAEVIQEVRKKVGHRIEL--RVDANRNWTYQE 716 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~--------------~~~~d~~~v~~vr~~~g~~~~l--~vDaN~~~~~~~ 716 (983)
+.+++.+.+.++.+.+.||..|-|.+|.+. +++.-.+.|+++|++++-.+.+ ++......+.++
T Consensus 66 g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~ 145 (350)
T 3b0p_A 66 GSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRG 145 (350)
T ss_dssp CSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHH
Confidence 357899999998888899999999987531 1233356788899887533333 333333345678
Q ss_pred HHHHHhhcccCCCceeec-----------------CCCChHHHHHHHhhc-CCcEEeCCCccCcCCChHHHHHhhcCCCc
Q 041113 717 ALEFGFLIKDCDLQYIEE-----------------PVQNEEDIIKYCEES-GLPVALDETIDKFQKDPLNMLEKYAHPGI 778 (983)
Q Consensus 717 a~~~~~~l~~~~i~~iEe-----------------P~~~~~~~~~l~~~~-~ipIa~dEs~~~~~~~~~~~~~~~~~~~~ 778 (983)
..++++.+++.++.+|-= |-.+++-++++++.. ++||.+.=.+.+..+ ...+++ |+
T Consensus 146 ~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~ed-----a~~~l~-Ga 219 (350)
T 3b0p_A 146 LAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEE-----ALFHLK-RV 219 (350)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHH-----HHHHHT-TS
T ss_pred HHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHH-----HHHHHh-CC
Confidence 889999998887765420 111466678888888 899998887777643 455555 78
Q ss_pred eEEEE
Q 041113 779 VAIVI 783 (983)
Q Consensus 779 ~~i~~ 783 (983)
|.+.+
T Consensus 220 D~V~i 224 (350)
T 3b0p_A 220 DGVML 224 (350)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 88876
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.082 Score=60.07 Aligned_cols=43 Identities=21% Similarity=0.081 Sum_probs=31.8
Q ss_pred CceEEEeCCCCCChhhHH---HHHHHhhC--CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWI---PIMKAVSG--SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~---~~~~~l~~--~~~vi~~Dl~G~G~S~~ 980 (983)
+.||||+||..++...+. .....|++ +++||++|+||||+|..
T Consensus 38 g~Pi~l~~Ggeg~~~~~~~~~g~~~~lA~~~~~~Vi~~DhRg~G~S~p 85 (446)
T 3n2z_B 38 GGSILFYTGNEGDIIWFCNNTGFMWDVAEELKAMLVFAEHRYYGESLP 85 (446)
T ss_dssp TCEEEEEECCSSCHHHHHHHCHHHHHHHHHHTEEEEEECCTTSTTCCT
T ss_pred CCCEEEEeCCCCcchhhhhcccHHHHHHHHhCCcEEEEecCCCCCCCC
Confidence 457999999998876432 23444544 36999999999999964
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=93.43 E-value=0.39 Score=52.49 Aligned_cols=123 Identities=11% Similarity=0.066 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhhhcCCCEEEEeccCCC--------ChHHHHHHHHHHHHHc-------CCCcEEEEEcCCCCCHHHHHHH
Q 041113 656 PVEVASIATTLVEEGFTAIKLKVARRA--------DPIKDAEVIQEVRKKV-------GHRIELRVDANRNWTYQEALEF 720 (983)
Q Consensus 656 ~~~~~~~~~~~~~~G~~~~KiKig~~~--------~~~~d~~~v~~vr~~~-------g~~~~l~vDaN~~~~~~~a~~~ 720 (983)
++++.+.++.+.+ ||..+-+.++.+. +++.-.+.+++||+.+ |+++.+.|=-+..|+.++..++
T Consensus 152 ~~~~~~aa~~~~~-g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~ 230 (336)
T 1f76_A 152 KDDYLICMEKIYA-YAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQV 230 (336)
T ss_dssp HHHHHHHHHHHGG-GCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHH
Confidence 7788887777655 9999999887531 1222356788888887 6688888888888999999999
Q ss_pred HhhcccCCCceeec-------------CC-------C-------ChHHHHHHHhhc--CCcEEeCCCccCcCCChHHHHH
Q 041113 721 GFLIKDCDLQYIEE-------------PV-------Q-------NEEDIIKYCEES--GLPVALDETIDKFQKDPLNMLE 771 (983)
Q Consensus 721 ~~~l~~~~i~~iEe-------------P~-------~-------~~~~~~~l~~~~--~ipIa~dEs~~~~~~~~~~~~~ 771 (983)
++.+++.++.+|.= |. . ..+..+++++.. ++||.+.=-+.+..| ..
T Consensus 231 a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~d-----a~ 305 (336)
T 1f76_A 231 ADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIA-----AR 305 (336)
T ss_dssp HHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHH-----HH
T ss_pred HHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHH-----HH
Confidence 99999888776651 00 0 023345666666 788887777776543 33
Q ss_pred hhcCCCceEEEEc
Q 041113 772 KYAHPGIVAIVIK 784 (983)
Q Consensus 772 ~~~~~~~~~i~~k 784 (983)
++++.|+|.|++-
T Consensus 306 ~~l~~GAd~V~ig 318 (336)
T 1f76_A 306 EKIAAGASLVQIY 318 (336)
T ss_dssp HHHHHTCSEEEES
T ss_pred HHHHCCCCEEEee
Confidence 4444578877754
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=93.40 E-value=0.14 Score=53.91 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=33.4
Q ss_pred CceEEEeCCCCCChhhHHHH---HHHhhC-CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPI---MKAVSG-SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~---~~~l~~-~~~vi~~Dl~G~G~S~ 979 (983)
.|.|||+||++++...|... ...+.+ .+.|+++|.+|+|.+.
T Consensus 47 ~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~pd~~~~g~~~ 92 (280)
T 3i6y_A 47 VPVLYWLSGLTCSDENFMQKAGAQRLAAELGIAIVAPDTSPRGEGV 92 (280)
T ss_dssp EEEEEEECCTTCCSSHHHHHSCCHHHHHHHTCEEEEECSSCCSTTC
T ss_pred ccEEEEecCCCCChhHHhhcccHHHHHhhCCeEEEEeCCccccccc
Confidence 58999999999999999874 333433 5999999999887653
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.21 Score=51.69 Aligned_cols=43 Identities=14% Similarity=0.249 Sum_probs=34.6
Q ss_pred CceEEEeCCCCCChhhHHH--HHHHhhC--CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIP--IMKAVSG--SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~--~~~~l~~--~~~vi~~Dl~G~G~S~~ 980 (983)
.|.|||+||++++...|.. .+..+.+ .+.|+++|.++++.++.
T Consensus 41 ~p~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 87 (263)
T 2uz0_A 41 IPVLYLLHGMSGNHNSWLKRTNVERLLRGTNLIVVMPNTSNGWYTDT 87 (263)
T ss_dssp BCEEEEECCTTCCTTHHHHHSCHHHHTTTCCCEEEECCCTTSTTSBC
T ss_pred CCEEEEECCCCCCHHHHHhccCHHHHHhcCCeEEEEECCCCCccccC
Confidence 6899999999999999998 5666654 47788888888877654
|
| >1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5 | Back alignment and structure |
|---|
Probab=93.04 E-value=0.31 Score=52.59 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=56.5
Q ss_pred cccCCCCEEEEeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCCCC------------------CCeeEEEEcCHHHHH
Q 041113 156 KDWIQFDVIIQIGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPS------------------HSVTHRIQSTIVQFV 216 (983)
Q Consensus 156 ~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~------------------~~~~~~i~~d~~~~l 216 (983)
..+.+||++|++|+++.-.....+...... ..++.|+.++...... ...++.|.+|+..++
T Consensus 216 ~~~~~aDlllviGTSl~V~P~a~l~~~~~~~~~~v~IN~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~gd~~~~l 295 (323)
T 1j8f_A 216 SDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQGC 295 (323)
T ss_dssp HGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHHHHH
T ss_pred HHHhCCCEEEEEeeCcccHHHHHHHHHHHcCCcEEEEeCCCCCCCcccccccccccccccccccccceeEEEeCCHHHHH
Confidence 356799999999999987766655544433 3456788887655432 336889999999999
Q ss_pred HHHHhccCCCCChhHHHHHHHHHH
Q 041113 217 DFLLKVQVPHRSSKWCSFLRALDM 240 (983)
Q Consensus 217 ~~L~~~~~~~~~~~w~~~~~~~~~ 240 (983)
..|.+.+ .|.+.+.+...
T Consensus 296 ~~L~~~l------gw~~~l~~l~~ 313 (323)
T 1j8f_A 296 LALAELL------GWKKELEDLVR 313 (323)
T ss_dssp HHHHHHT------TCHHHHHHHHH
T ss_pred HHHHHHc------CCchHHHHHHH
Confidence 9998876 36666655444
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=93.00 E-value=0.17 Score=53.26 Aligned_cols=41 Identities=20% Similarity=0.350 Sum_probs=33.0
Q ss_pred CceEEEeCCCCCChhhHHH---HHHHhhC-CCEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIP---IMKAVSG-SARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~---~~~~l~~-~~~vi~~Dl~G~G~S 978 (983)
.|.|||+||++++...|.. +...+.+ .+.|+++|.+|+|.+
T Consensus 45 ~P~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~~g~~ 89 (280)
T 3ls2_A 45 VPVLYWLSGLTCTDENFMQKAGAFKKAAELGIAIVAPDTSPRGDN 89 (280)
T ss_dssp EEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEECCSSCCSTT
T ss_pred cCEEEEeCCCCCChhhhhcchhHHHHHhhCCeEEEEeCCcccccc
Confidence 5899999999999999976 3344433 699999999987765
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.37 Score=51.95 Aligned_cols=129 Identities=13% Similarity=0.124 Sum_probs=88.0
Q ss_pred CCCHHHHHHHHHHhhhcCCC-EEEEeccCCC---------ChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHh
Q 041113 653 NKSPVEVASIATTLVEEGFT-AIKLKVARRA---------DPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~-~~KiKig~~~---------~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~ 722 (983)
..+++++.+.++.+.+.||. .+-+.++.+. +++.-.+.++++|+++ ++.+.+=-+..|+.++..++++
T Consensus 102 g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~--~~Pv~vKi~~~~~~~~~~~~a~ 179 (311)
T 1jub_A 102 GMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFF--TKPLGVKLPPYFDLVHFDIMAE 179 (311)
T ss_dssp CSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTC--CSCEEEEECCCCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCHHHHHHHHH
Confidence 45788999999999999999 9999886321 3444467788888876 3445544455578889989999
Q ss_pred hcccCCCceee----------------cCC---------------C--ChHHHHHHHhhc--CCcEEeCCCccCcCCChH
Q 041113 723 LIKDCDLQYIE----------------EPV---------------Q--NEEDIIKYCEES--GLPVALDETIDKFQKDPL 767 (983)
Q Consensus 723 ~l~~~~i~~iE----------------eP~---------------~--~~~~~~~l~~~~--~ipIa~dEs~~~~~~~~~ 767 (983)
.+++.++.+|- .|. . .++..+++++.. .+||.+.=-+.+..|
T Consensus 180 ~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~~~d--- 256 (311)
T 1jub_A 180 ILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQD--- 256 (311)
T ss_dssp HHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHH---
T ss_pred HHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHH---
Confidence 99998877642 111 0 134456777777 789888877777643
Q ss_pred HHHHhhcCCCceEEEEcCCCc
Q 041113 768 NMLEKYAHPGIVAIVIKPSVI 788 (983)
Q Consensus 768 ~~~~~~~~~~~~~i~~k~~~~ 788 (983)
..+++..|+|.+++--..+
T Consensus 257 --a~~~l~~GAd~V~vg~~~l 275 (311)
T 1jub_A 257 --AFEHLLCGATMLQIGTALH 275 (311)
T ss_dssp --HHHHHHHTCSEEEECHHHH
T ss_pred --HHHHHHcCCCEEEEchHHH
Confidence 3333445788887654433
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.47 Score=57.71 Aligned_cols=122 Identities=14% Similarity=0.056 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHH----HHHHHHHHHHHcCCCcEE--EEEc--
Q 041113 656 PVEVASIATTLVEEGFTAIKLKVARR-------------------ADPIK----DAEVIQEVRKKVGHRIEL--RVDA-- 708 (983)
Q Consensus 656 ~~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~----d~~~v~~vr~~~g~~~~l--~vDa-- 708 (983)
.+++.+.++.+++.||..+.|+.+.+ .+.+. -++.+++||+++|+++.+ ++-+
T Consensus 148 i~~f~~aA~~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~ 227 (729)
T 1o94_A 148 QQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDT 227 (729)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEcccc
Confidence 35667777778889999999998651 12222 267899999999988643 3333
Q ss_pred ---CCCCC-HHHHHHHHhhcccCCCcee-----------ecCCC--------ChHHHHHHHhhcCCcEEeCCCccCcCCC
Q 041113 709 ---NRNWT-YQEALEFGFLIKDCDLQYI-----------EEPVQ--------NEEDIIKYCEESGLPVALDETIDKFQKD 765 (983)
Q Consensus 709 ---N~~~~-~~~a~~~~~~l~~~~i~~i-----------EeP~~--------~~~~~~~l~~~~~ipIa~dEs~~~~~~~ 765 (983)
.++|+ .++++++++.|++. +.++ +...+ +.+-.+++++..++||.+.-.+.+..+
T Consensus 228 ~~~~~G~~~~~~~~~~~~~l~~~-~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~- 305 (729)
T 1o94_A 228 VYGPGQIEAEVDGQKFVEMADSL-VDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEK- 305 (729)
T ss_dssp SSCTTSCCTTTHHHHHHHHHGGG-CSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEECCSCCCCHHH-
T ss_pred CcCCCCCCchHHHHHHHHHHHhh-cCEEEEeeecccccccccCCccccCccccHHHHHHHHHHCCCEEEEeCCCCCHHH-
Confidence 25788 67888899888763 3322 21111 234456788999999999988877643
Q ss_pred hHHHHHhhcCCC-ceEEEE
Q 041113 766 PLNMLEKYAHPG-IVAIVI 783 (983)
Q Consensus 766 ~~~~~~~~~~~~-~~~i~~ 783 (983)
...+++.+ +|.|.+
T Consensus 306 ----a~~~l~~g~aD~V~~ 320 (729)
T 1o94_A 306 ----MIEIVTKGYADIIGC 320 (729)
T ss_dssp ----HHHHHHTTSCSBEEE
T ss_pred ----HHHHHHCCCCCEEEe
Confidence 44445444 777664
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=92.85 E-value=0.35 Score=58.48 Aligned_cols=121 Identities=11% Similarity=0.038 Sum_probs=82.8
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCCC--------------------ChHH----HHHHHHHHHHHcCCC--cEEEEEcC-
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARRA--------------------DPIK----DAEVIQEVRKKVGHR--IELRVDAN- 709 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~~--------------------~~~~----d~~~v~~vr~~~g~~--~~l~vDaN- 709 (983)
+++.+.++.+++.||..+-|+.+.+. +++. -.+.+++||+++|++ +.+++-++
T Consensus 156 ~~f~~aA~~a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~ 235 (690)
T 3k30_A 156 RWHRNAVRRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVEE 235 (690)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccchHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECccc
Confidence 56667777788899999999875321 2332 257899999999988 45666554
Q ss_pred ---CCCCHHHHHHHHhhcccCCCceee-------c----CC--C---ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHH
Q 041113 710 ---RNWTYQEALEFGFLIKDCDLQYIE-------E----PV--Q---NEEDIIKYCEESGLPVALDETIDKFQKDPLNML 770 (983)
Q Consensus 710 ---~~~~~~~a~~~~~~l~~~~i~~iE-------e----P~--~---~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~ 770 (983)
++|+.+++.++++.|++ ++.+++ + |. + ..+..+++++..++||.+--.+.+.. ..
T Consensus 236 ~~~~g~~~~~~~~~~~~l~~-~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~-----~a 309 (690)
T 3k30_A 236 EIDGGITREDIEGVLRELGE-LPDLWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLTTKPVVGVGRFTSPD-----AM 309 (690)
T ss_dssp CSTTSCCHHHHHHHHHHHTT-SSSEEEEECSCHHHHTCCTTTCCTTTTHHHHTTSGGGCSSCEEECSCCCCHH-----HH
T ss_pred cCCCCCCHHHHHHHHHHHHh-hcCEEEEecccccccCCCCccCCccccHHHHHHHHHHcCCeEEEeCCCCCHH-----HH
Confidence 57899999999999988 455542 1 11 1 12344567888899999887777653 24
Q ss_pred HhhcCCC-ceEEEE
Q 041113 771 EKYAHPG-IVAIVI 783 (983)
Q Consensus 771 ~~~~~~~-~~~i~~ 783 (983)
..+++.+ +|.|.+
T Consensus 310 ~~~l~~g~~d~v~~ 323 (690)
T 3k30_A 310 VRQIKAGILDLIGA 323 (690)
T ss_dssp HHHHHTTSCSEEEE
T ss_pred HHHHHCCCcceEEE
Confidence 4444444 788764
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=92.82 E-value=0.062 Score=52.99 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=31.4
Q ss_pred CceEEEeCCCCCCh-hhHHHHHHHhhCCCEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFLGTG-EEWIPIMKAVSGSARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~~-~~w~~~~~~l~~~~~vi~~Dl~G~G~S 978 (983)
+|+|||+||++++. ..|..+...+.. .++.+|+||++..
T Consensus 17 ~~~vv~~HG~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~ 56 (191)
T 3bdv_A 17 QLTMVLVPGLRDSDDEHWQSHWERRFP--HWQRIRQREWYQA 56 (191)
T ss_dssp TCEEEEECCTTCCCTTSHHHHHHHHCT--TSEECCCSCCSSC
T ss_pred CceEEEECCCCCCchhhHHHHHHHhcC--CeEEEeccCCCCc
Confidence 78999999999988 789888776433 4577899998754
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.25 Score=53.48 Aligned_cols=131 Identities=10% Similarity=0.023 Sum_probs=87.1
Q ss_pred EEEEeecCCCCHHHHHHHHHHhhhcCCC---EEEEeccCCC---------ChHHHHHHHHHHHHHcCCCcEEEEEcCCCC
Q 041113 645 KICALIDSNKSPVEVASIATTLVEEGFT---AIKLKVARRA---------DPIKDAEVIQEVRKKVGHRIELRVDANRNW 712 (983)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~---~~KiKig~~~---------~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~ 712 (983)
|+..++ ...+++++.+.++.+.+.||. .+-+.++.+. +++.-.+.++++|+++ ++.+.+=....|
T Consensus 95 p~~~~i-~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~--~~Pv~vK~~~~~ 171 (314)
T 2e6f_A 95 PLFLSI-SGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAY--GLPFGVKMPPYF 171 (314)
T ss_dssp CEEEEE-CCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHH--CSCEEEEECCCC
T ss_pred cEEEEe-CCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhc--CCCEEEEECCCC
Confidence 333444 245789999999998889999 8999886421 3444467899999987 355555555568
Q ss_pred CHHHHHHHHhhcccCC-Cceeec----------------CCC-----------------ChHHHHHHHhhc-CCcEEeCC
Q 041113 713 TYQEALEFGFLIKDCD-LQYIEE----------------PVQ-----------------NEEDIIKYCEES-GLPVALDE 757 (983)
Q Consensus 713 ~~~~a~~~~~~l~~~~-i~~iEe----------------P~~-----------------~~~~~~~l~~~~-~ipIa~dE 757 (983)
+.++..++++.+++.+ +.+|-= |.. .++..+++++.. .+||.+.=
T Consensus 172 ~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi~~G 251 (314)
T 2e6f_A 172 DIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCG 251 (314)
T ss_dssp CHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEEEES
T ss_pred CHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEEEEC
Confidence 9999989999998888 776631 110 134445666676 78887777
Q ss_pred CccCcCCChHHHHHhhcCCCceEEEE
Q 041113 758 TIDKFQKDPLNMLEKYAHPGIVAIVI 783 (983)
Q Consensus 758 s~~~~~~~~~~~~~~~~~~~~~~i~~ 783 (983)
-+.+..| ..+++..|+|.+++
T Consensus 252 GI~~~~d-----a~~~l~~GAd~V~i 272 (314)
T 2e6f_A 252 GVYSGED-----AFLHILAGASMVQV 272 (314)
T ss_dssp SCCSHHH-----HHHHHHHTCSSEEE
T ss_pred CCCCHHH-----HHHHHHcCCCEEEE
Confidence 6666543 33333446766665
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=92.24 E-value=0.11 Score=63.14 Aligned_cols=43 Identities=9% Similarity=0.173 Sum_probs=33.6
Q ss_pred CceEEEeCCCCCCh---hhHHH----HHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTG---EEWIP----IMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~---~~w~~----~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
.|+|||+||.+.+. ..|.. +...|++ .|+|+++|+||||.|..
T Consensus 485 ~p~iv~~HGg~~~~~~~~~~~~~~~~~~~~la~~G~~v~~~d~rG~g~s~~ 535 (706)
T 2z3z_A 485 YPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGA 535 (706)
T ss_dssp EEEEEECCCCTTCCCCCSCC----CCHHHHHHHTTCEEEEECCTTCSSSCH
T ss_pred ccEEEEecCCCCceeeccccccCchHHHHHHHhCCcEEEEEecCCCcccch
Confidence 47899999988776 46775 5777754 69999999999998753
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=92.09 E-value=0.1 Score=63.58 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=34.4
Q ss_pred CceEEEeCCCCCCh---hhHH-----HHHHHhh-CCCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTG---EEWI-----PIMKAVS-GSARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~---~~w~-----~~~~~l~-~~~~vi~~Dl~G~G~S~ 979 (983)
.|.|||+||++.+. ..|. .+.+.|+ ..|.|+++|+||||.|.
T Consensus 517 ~p~vv~~hG~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~s~ 567 (741)
T 2ecf_A 517 YPVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRG 567 (741)
T ss_dssp EEEEEECCCSTTCCSCSSCCCCSHHHHHHHHHHHTTCEEEEECCTTCSSSC
T ss_pred cCEEEEEcCCCCcccccccccccchhHHHHHHHhCCCEEEEEecCCCCCCC
Confidence 47899999999875 4565 6777785 46999999999999975
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=91.95 E-value=0.71 Score=51.19 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=30.8
Q ss_pred CceEEEeCCCCCChh---------hHHHHHHHh-hCCCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGE---------EWIPIMKAV-SGSARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~---------~w~~~~~~l-~~~~~vi~~Dl~G~G~S~~ 980 (983)
.|.|++.||+..+.. .|....... .+.|+|+++|+||||.|..
T Consensus 74 ~PvV~~~HG~~~~~~~~ps~~~~~~~~~~~~lal~~Gy~Vv~~D~rG~G~s~~ 126 (377)
T 4ezi_A 74 VGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVMPDYLGLGDNEL 126 (377)
T ss_dssp EEEEEEECCCCCSTTCSGGGCCGGGHHHHHHHTTTTCCEEEEECCTTSTTCCC
T ss_pred CcEEEEeCCCcCCcccCCCcCcccchHHHHHHHHhCCcEEEEeCCCCCCCCCC
Confidence 578999999985321 233222333 5679999999999999975
|
| >1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D* | Back alignment and structure |
|---|
Probab=91.87 E-value=0.45 Score=51.28 Aligned_cols=116 Identities=12% Similarity=0.007 Sum_probs=76.3
Q ss_pred CceEEEEcc-CCCh-hHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCCCEE
Q 041113 87 NKGLLLVGA-VHNE-DEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVI 164 (983)
Q Consensus 87 krPvIl~G~-g~~~-~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~aDlv 164 (983)
+-.+|+.|+ |... +..+.+.+||++||+-|-.|-- -+ + .|.+|.+|- +|..| +.+.-|+|-
T Consensus 201 ~A~ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~-~v-d---~Gw~~~~~Q----VGqTG--------k~V~P~~lY 263 (320)
T 1o97_D 201 TVDFIMSIGRGIGEETNVEQFRELADEAGATLCCSRP-IA-D---AGWLPKSRQ----VGQSG--------KVVGSCKLY 263 (320)
T ss_dssp CSSEEEEECGGGCSGGGHHHHHHHHHHHTCEEEECHH-HH-H---TTSSCGGGB----BSTTS--------BCCTTCSEE
T ss_pred CCCEEEEcCCccCChHHHHHHHHHHHHhCCceeecHH-HH-h---CCCCChhhE----eecCc--------eEecccceE
Confidence 334666665 5543 3457899999999998866531 11 0 255555442 34433 344556999
Q ss_pred EEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 165 IQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 165 l~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
|++|-+=.-.++.+.. ..+.+|-||.|++.. -+..+|..|++|+..++.+|.+.+
T Consensus 264 iA~GISGAiQHlaGm~---~s~~IVAIN~D~~Ap-IF~~ADygiVgDl~~vvP~L~~~l 318 (320)
T 1o97_D 264 VAMGISGSIQHMAGMK---HVPTIIAVNTDPGAS-IFTIAKYGIVADIFDIEEELKAQL 318 (320)
T ss_dssp EEESCCCCHHHHHHHT---TCSEEEEECSCTTCG-GGGTCSEEECSCHHHHHHHHHHHC
T ss_pred EEEeccCcHHHHhhcc---cCCEEEEEeCCCCCC-cccccCeEEeeeHHHHHHHHHHHH
Confidence 9999875434444331 234578899998743 245689999999999999999876
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=91.51 E-value=0.14 Score=54.56 Aligned_cols=36 Identities=19% Similarity=0.548 Sum_probs=30.3
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC---CCEEEEEcCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG---SARCISIDLP 973 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~---~~~vi~~Dl~ 973 (983)
.|.||||||+|++...|..+.+.|.. .+.+++|+-|
T Consensus 66 ~plVI~LHG~G~~~~~~~~~~~~l~~~~~~~~~v~P~Ap 104 (285)
T 4fhz_A 66 TSLVVFLHGYGADGADLLGLAEPLAPHLPGTAFVAPDAP 104 (285)
T ss_dssp SEEEEEECCTTBCHHHHHTTHHHHGGGSTTEEEEEECCS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEecCCC
Confidence 57899999999999999998888865 4788888754
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=91.15 E-value=0.18 Score=60.51 Aligned_cols=41 Identities=10% Similarity=0.046 Sum_probs=35.5
Q ss_pred CceEEEeCCCCCChh--hHHHHHHHhhCC-CEEEEEcCCC---CCCC
Q 041113 938 DNILLFLHGFLGTGE--EWIPIMKAVSGS-ARCISIDLPG---HGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~--~w~~~~~~l~~~-~~vi~~Dl~G---~G~S 978 (983)
.|.|||+||++.+.. .|..+...|.+. |.|+++|+|| ||+|
T Consensus 424 ~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~~~G~~ 470 (662)
T 3azo_A 424 PPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGGSTGYGRA 470 (662)
T ss_dssp CCEEEEECSSSSSCCCCSCCHHHHHHHTTTCEEEEEECTTCSSSCHH
T ss_pred ccEEEEECCCCCccCcccchHHHHHHHhCCCEEEEECCCCCCCccHH
Confidence 578999999988766 788888888765 9999999999 7765
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=90.95 E-value=0.38 Score=50.23 Aligned_cols=41 Identities=20% Similarity=0.430 Sum_probs=32.7
Q ss_pred CceEEEeCCCCCChhhHHH-------HHHHhhC-----CCEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIP-------IMKAVSG-----SARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~-------~~~~l~~-----~~~vi~~Dl~G~G~S 978 (983)
.|.|||+||++++...|.. +.+.|.+ .|.|+++|.+|+|.+
T Consensus 62 ~P~vv~lHG~g~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~vv~~d~~~~~~~ 114 (268)
T 1jjf_A 62 YSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTNAAGPG 114 (268)
T ss_dssp BCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECCCCCCTT
T ss_pred ccEEEEECCCCCCcchhhhccccHHHHHHHHHHcCCCCCEEEEEeCCCCCCcc
Confidence 5899999999988877754 3666653 499999999998764
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.66 E-value=0.18 Score=61.21 Aligned_cols=42 Identities=10% Similarity=-0.019 Sum_probs=31.6
Q ss_pred CceEEEeCCCCCChh---hHH-HHHHHh--hCCCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGE---EWI-PIMKAV--SGSARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~---~w~-~~~~~l--~~~~~vi~~Dl~G~G~S~ 979 (983)
.|.|||+||++.+.. .|. .+...| ...|.|+++|+||||.|.
T Consensus 496 ~p~vl~~hG~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~~ 543 (719)
T 1z68_A 496 YPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQG 543 (719)
T ss_dssp EEEEEEECCCTTBCCCCCCCCCCHHHHHHHTTCCEEEEEECTTBSSSC
T ss_pred ccEEEEECCCCCcCcccccchhhHHHHHHhcCCeEEEEEcCCCCCCCc
Confidence 478999999998753 443 233434 357999999999999875
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=90.04 E-value=0.53 Score=49.46 Aligned_cols=39 Identities=15% Similarity=0.311 Sum_probs=29.8
Q ss_pred CceEEEeCCCCCChhhHHH---HHHHhh-CCCEEEEEcCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIP---IMKAVS-GSARCISIDLPGHG 976 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~---~~~~l~-~~~~vi~~Dl~G~G 976 (983)
.|.|||+||++++...|.. +...+. ..+.|+++|.+++|
T Consensus 51 ~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~rg 93 (283)
T 4b6g_A 51 LGVIYWLSGLTCTEQNFITKSGFQRYAAEHQVIVVAPDTSPRG 93 (283)
T ss_dssp EEEEEEECCTTCCSHHHHHHSCTHHHHHHHTCEEEEECSSCCS
T ss_pred CCEEEEEcCCCCCccchhhcccHHHHHhhCCeEEEEecccccc
Confidence 5889999999999999964 234443 36999999987443
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=90.03 E-value=0.1 Score=63.48 Aligned_cols=41 Identities=27% Similarity=0.230 Sum_probs=32.2
Q ss_pred CceEEEeCCCCCCh---hhHH--HHHHHhh-CCCEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFLGTG---EEWI--PIMKAVS-GSARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~~---~~w~--~~~~~l~-~~~~vi~~Dl~G~G~S 978 (983)
.|+|||+||++.+. ..|. .....|+ ..|.|+++|+||||.+
T Consensus 496 ~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 542 (723)
T 1xfd_A 496 YPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQ 542 (723)
T ss_dssp EEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSS
T ss_pred cCEEEEEcCCCCccccCccccccHHHHHhhcCCEEEEEECCCCCccc
Confidence 58899999999873 3443 4556676 4699999999999984
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=89.19 E-value=1.3 Score=52.09 Aligned_cols=105 Identities=13% Similarity=0.023 Sum_probs=79.2
Q ss_pred hHHHHHhhhhccCceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+.+++++.+|++-=| |+.-.++.+.+|.. .++|+++|.-+-....+-+ +..+
T Consensus 53 Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l~~A~~--~~~Pll~itg~~~~~~~~~-----------------~~~Q 113 (563)
T 2uz1_A 53 AGHAAEGYARAGAKLGVALVTAGGGFTNAVTPIANAWL--DRTPVLFLTGSGALRDDET-----------------NTLQ 113 (563)
T ss_dssp HHHHHHHHHHHHTSCEEEEECTTHHHHTTHHHHHHHHH--HTCCEEEEEEECCGGGTTS-----------------CCTT
T ss_pred HHHHHHHHHHHhCCCEEEEEccCccHHHHHHHHHHHHh--cCCCEEEEeCCCCcccCCc-----------------hhhh
Confidence 66788888888788888877444 45556789999877 7999999887765432110 1124
Q ss_pred C-CCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 N-ISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~-~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
. .|...+.+.+-....++++++++...+++|+. .+||+.|++..|
T Consensus 114 ~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 114 AGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp CCCCHHHHHGGGCSEEEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred hhccHHHHhhhhhceEEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 4 78999999998899999999988888887753 359999999977
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=89.14 E-value=0.11 Score=54.17 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=34.5
Q ss_pred EEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhC---CCEEEEEcCC
Q 041113 914 LNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSG---SARCISIDLP 973 (983)
Q Consensus 914 ~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~---~~~vi~~Dl~ 973 (983)
+.+..+.++|++... .+. .+++||||||+|++...|..+.+.|.. .+++++|+-|
T Consensus 18 ~~~~~~~l~y~ii~P--~~~---~~~~VI~LHG~G~~~~dl~~l~~~l~~~~~~~~~i~P~Ap 75 (246)
T 4f21_A 18 LYFQSNAMNYELMEP--AKQ---ARFCVIWLHGLGADGHDFVDIVNYFDVSLDEIRFIFPHAD 75 (246)
T ss_dssp -----CCCCEEEECC--SSC---CCEEEEEEEC--CCCCCGGGGGGGCCSCCTTEEEEEECGG
T ss_pred EEEecCCcCceEeCC--CCc---CCeEEEEEcCCCCCHHHHHHHHHHhhhcCCCeEEEeCCCC
Confidence 344455556654332 222 267999999999999999998888763 5788998764
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=88.87 E-value=5.1 Score=42.38 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccC-------------C-CChHHHHHHHHHHHHHc-CCCcEE--EEEcC-CCCCHH
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVAR-------------R-ADPIKDAEVIQEVRKKV-GHRIEL--RVDAN-RNWTYQ 715 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~-------------~-~~~~~d~~~v~~vr~~~-g~~~~l--~vDaN-~~~~~~ 715 (983)
.+++.+.+-++++.+.|...+||.=+. . .+.++=+++|++++++- ++++.| |-|+. .....+
T Consensus 91 g~~~~v~~~v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g~~ 170 (295)
T 1s2w_A 91 GNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLD 170 (295)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhccccHH
Confidence 467888889999999999999996432 0 11223478999998874 345444 56776 566789
Q ss_pred HHHHHHhhcccCC--CceeecCCCChHHHHHHHhhcC--CcEEeC
Q 041113 716 EALEFGFLIKDCD--LQYIEEPVQNEEDIIKYCEESG--LPVALD 756 (983)
Q Consensus 716 ~a~~~~~~l~~~~--i~~iEeP~~~~~~~~~l~~~~~--ipIa~d 756 (983)
++++.++.+++.| ..|+|-++++.+..+++.+... +|+...
T Consensus 171 ~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~~~~P~i~~ 215 (295)
T 1s2w_A 171 EALKRAEAYRNAGADAILMHSKKADPSDIEAFMKAWNNQGPVVIV 215 (295)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCSSSSHHHHHHHHHHTTCSCEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHcCCCCCEEEe
Confidence 9999999998875 5689977777899999999877 887543
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=88.84 E-value=0.54 Score=55.61 Aligned_cols=43 Identities=12% Similarity=-0.103 Sum_probs=33.7
Q ss_pred CceEEEeCCCCCChhhHHHH---H-HHh-hCCCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPI---M-KAV-SGSARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~---~-~~l-~~~~~vi~~Dl~G~G~S~~ 980 (983)
.|.||+.||++.+...|... . ..| ...|.|+++|.||||.|..
T Consensus 35 ~P~vv~~~~~g~~~~~~~~y~~~~~~~la~~Gy~vv~~D~RG~G~S~g 82 (587)
T 3i2k_A 35 VPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEG 82 (587)
T ss_dssp EEEEEEEESSCTTCHHHHHTTTCCTHHHHHTTCEEEEEECTTSTTCCS
T ss_pred eeEEEEECCcCCCccccccchhhHHHHHHHCCCEEEEEcCCCCCCCCC
Confidence 57899999999887665433 2 455 4569999999999999975
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
Probab=88.63 E-value=1.2 Score=52.67 Aligned_cols=106 Identities=13% Similarity=0.064 Sum_probs=80.0
Q ss_pred hHHHHHhhhhccCceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+.+++++.+|++-=| |..-.+..+.+|.. .++|+++|.-.-....+- .+..+
T Consensus 62 Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~gv~~A~~--~~vPll~itg~~~~~~~g-----------------~~~~Q 122 (590)
T 1ybh_A 62 GVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALL--DSVPLVAITGQVPRRMIG-----------------TDAFQ 122 (590)
T ss_dssp HHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHHHHHHH--HTCCEEEEEEECCGGGTT-----------------TTCTT
T ss_pred HHHHHHHHHHHHCCCEEEEeccCchHHHHHHHHHHHHh--hCCCEEEEeCcCCccccC-----------------CCccc
Confidence 67788898888778877766444 35556888988887 899999998766532110 01124
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-....++++++++...+++|+. .+||+.|++..|-
T Consensus 123 ~~d~~~~~~~~~k~~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~dv 173 (590)
T 1ybh_A 123 ETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDI 173 (590)
T ss_dssp CCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHHH
T ss_pred ccCHHHHHHHHhCeEEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcch
Confidence 579999999998899999999999999888874 2589999998763
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=88.48 E-value=1.3 Score=52.20 Aligned_cols=105 Identities=10% Similarity=0.013 Sum_probs=77.3
Q ss_pred hHHHHHhhhhccCceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+.+++++++|++-=| |+.-.+..+.+|.. .++|+++|.-+-....+-+ ...+
T Consensus 60 Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l~~A~~--~~vPll~itg~~~~~~~~~-----------------~~~Q 120 (566)
T 1ozh_A 60 AAFMAAAVGRITGKAGVALVTSGPGCSNLITGMATANS--EGDPVVALGGAVKRADKAK-----------------QVHQ 120 (566)
T ss_dssp HHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHHHHHHH--HTCCEEEEEEECCTTTC-----------------------
T ss_pred HHHHHHHHHHHHCCCEEEEEccChHHHHHHHHHHHHHh--cCCCEEEEeCCCccccCCC-----------------Cccc
Confidence 56788888877788888877444 35556799999987 7999999987765432110 1124
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
..|...+.+.+-....++++++++...+++|+. .+||+.|++..|
T Consensus 121 ~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 121 SMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred ccCHHHHHHHHhheEEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 578999999998899999999998877777653 259999999865
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=88.26 E-value=1.3 Score=53.21 Aligned_cols=105 Identities=13% Similarity=0.032 Sum_probs=78.8
Q ss_pred hHHHHHhhhhccCceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+.+++++.+|++-=| |..-.+..|.+|.. .++|+++|.-+-....+-+ +..+
T Consensus 132 Aa~aAdGyAr~tGkpgvv~~TsGpG~~N~~~gia~A~~--d~vPllvItG~~~~~~~g~-----------------~a~Q 192 (677)
T 1t9b_A 132 AGHMAEGYARASGKPGVVLVTSGPGATNVVTPMADAFA--DGIPMVVFTGQVPTSAIGT-----------------DAFQ 192 (677)
T ss_dssp HHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHHHHHHH--HTCCEEEEEEECCTTTTTS-----------------CCTT
T ss_pred HHHHHHHHHHHHCCCEEEEECCChHHHHHHHHHHHHHH--cCCCEEEEeCCCChhhcCC-----------------CCcc
Confidence 56788888887788877766444 44556889999987 7999999987765432110 1124
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
..|...+.+.+-....+|++++++...+++|+. .+||+.|++..|
T Consensus 193 ~~Dq~~i~~~~tk~~~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP~D 242 (677)
T 1t9b_A 193 EADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKD 242 (677)
T ss_dssp CCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred ccCHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhhCCCceEEEEcCHH
Confidence 578889999888889999999999888888764 368999999855
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=87.90 E-value=0.39 Score=58.63 Aligned_cols=41 Identities=15% Similarity=0.025 Sum_probs=32.7
Q ss_pred CceEEEeCCCCCChh--hHHHHHHHhh-CCCEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFLGTGE--EWIPIMKAVS-GSARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~--~w~~~~~~l~-~~~~vi~~Dl~G~G~S 978 (983)
.|+||++||.+.+.. .|......|. ..|.|+++|+||+|.+
T Consensus 488 ~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~ 531 (741)
T 1yr2_A 488 LPTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGGEY 531 (741)
T ss_dssp CCEEEECCCCTTCCCCCCCCHHHHHHHTTTCEEEEECCTTSSTT
T ss_pred CcEEEEECCCCCccCCCCcCHHHHHHHHCCcEEEEEecCCCCCC
Confidence 789999999987665 4555555554 4699999999999976
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=87.73 E-value=1.7 Score=51.23 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=78.9
Q ss_pred hHHHHHhhhhccCceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+.+++++++|++-=| +..-.+..+.+|.. .++|+++|.-+-....+-+ . ...+
T Consensus 60 Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~v~~A~~--~~~Pll~itg~~~~~~~~~---------------~-~~~Q 121 (573)
T 2iht_A 60 AGVAADVLARITGRPQACWATLGPGMTNLSTGIATSVL--DRSPVIALAAQSESHDIFP---------------N-DTHQ 121 (573)
T ss_dssp HHHHHHHHHHHHCSCEEEEECTTHHHHHHHHHHHHHHH--HTCCEEEEEEESCGGGCCT---------------T-TSTT
T ss_pred HHHHHHHHHHHHCCCEEEEEccCchHHHHHHHHHHHHh--hCCCEEEEcccCcccccCC---------------c-Cccc
Confidence 56788888877788888776444 34455788999887 7999999987765432110 0 1234
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-....++++++++...+++|+. .+||+.|++..|-
T Consensus 122 ~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 172 (573)
T 2iht_A 122 CLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDL 172 (573)
T ss_dssp CCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHHH
T ss_pred cCCHHHHHHhHhhEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 579999999998899999999988887777753 2589999998663
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=87.73 E-value=0.77 Score=55.95 Aligned_cols=42 Identities=14% Similarity=-0.020 Sum_probs=30.1
Q ss_pred CceEEEeCCCCCCh---hhHH-HHHHHhh--CCCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTG---EEWI-PIMKAVS--GSARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~---~~w~-~~~~~l~--~~~~vi~~Dl~G~G~S~ 979 (983)
.|.||++||.+.+. ..|. .....|. ..|.|+++|.||+|.+.
T Consensus 502 ~P~vv~~HGg~~~~~~~~~~~~~~~~~l~~~~G~~Vv~~D~rG~g~~g 549 (740)
T 4a5s_A 502 YPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQG 549 (740)
T ss_dssp EEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSC
T ss_pred ccEEEEECCCCcccccccccCcCHHHHHHhcCCeEEEEEcCCCCCcCC
Confidence 58899999998873 2332 1223333 57999999999999764
|
| >3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A* | Back alignment and structure |
|---|
Probab=87.72 E-value=0.5 Score=49.85 Aligned_cols=78 Identities=15% Similarity=0.261 Sum_probs=53.5
Q ss_pred ccCCCCEEEEeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCC-C-CCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHH
Q 041113 157 DWIQFDVIIQIGSRITSKRISQMIEECFP-CTYILVDNHPCRH-D-PSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCS 233 (983)
Q Consensus 157 ~~~~aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~-~-~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~ 233 (983)
.+.+||++|++|+++.-+...+....... .++|.|+.++... . .....++.+.+|+...+..|.+.+ .|.+
T Consensus 194 ~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~l------gw~~ 267 (285)
T 3glr_A 194 DFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELL------GWTE 267 (285)
T ss_dssp HHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHH------TCHH
T ss_pred HHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHh------CCHH
Confidence 35689999999999866554433332222 3577788877521 0 224578899999999999999876 4776
Q ss_pred HHHHHHH
Q 041113 234 FLRALDM 240 (983)
Q Consensus 234 ~~~~~~~ 240 (983)
++.+...
T Consensus 268 el~~~~~ 274 (285)
T 3glr_A 268 EMRDLVQ 274 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655544
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=87.63 E-value=5.3 Score=40.60 Aligned_cols=138 Identities=14% Similarity=0.238 Sum_probs=92.2
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..++++..+.++.+++.|++.+-+-.-. ....+.++++|+.+ +++.+- +..-.+.+++...++ .|-.|+
T Consensus 42 ~~~~~~a~~~a~al~~gGi~~iEvt~~t----~~a~e~I~~l~~~~-~~~~iG--aGTVlt~~~a~~Ai~----AGA~fI 110 (232)
T 4e38_A 42 IDNAEDIIPLGKVLAENGLPAAEITFRS----DAAVEAIRLLRQAQ-PEMLIG--AGTILNGEQALAAKE----AGATFV 110 (232)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEETTS----TTHHHHHHHHHHHC-TTCEEE--EECCCSHHHHHHHHH----HTCSEE
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC----CCHHHHHHHHHHhC-CCCEEe--ECCcCCHHHHHHHHH----cCCCEE
Confidence 4678889999999999999999987643 23467888899999 565444 444678888766654 466677
Q ss_pred ecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCC-CcCCHHHHHHHHHHHHHc-CCcEEe
Q 041113 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPS-VIGGFENAGLIARWAQRH-GKMAVV 810 (983)
Q Consensus 733 EeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~-~~GGl~~~~~~~~~A~~~-gi~~~~ 810 (983)
=-|-.+. +..+.+++.++|+..| +.+.. ......+.|+|++.+=|. ..||+.-...+ ..-. +++++.
T Consensus 111 vsP~~~~-~vi~~~~~~gi~~ipG--v~Tpt-----Ei~~A~~~Gad~vK~FPa~~~gG~~~lkal---~~p~p~ip~~p 179 (232)
T 4e38_A 111 VSPGFNP-NTVRACQEIGIDIVPG--VNNPS-----TVEAALEMGLTTLKFFPAEASGGISMVKSL---VGPYGDIRLMP 179 (232)
T ss_dssp ECSSCCH-HHHHHHHHHTCEEECE--ECSHH-----HHHHHHHTTCCEEEECSTTTTTHHHHHHHH---HTTCTTCEEEE
T ss_pred EeCCCCH-HHHHHHHHcCCCEEcC--CCCHH-----HHHHHHHcCCCEEEECcCccccCHHHHHHH---HHHhcCCCeee
Confidence 6675544 4444556679999887 44543 355556679999887774 34776443333 3333 577665
Q ss_pred CC
Q 041113 811 SA 812 (983)
Q Consensus 811 ~~ 812 (983)
.+
T Consensus 180 tG 181 (232)
T 4e38_A 180 TG 181 (232)
T ss_dssp BS
T ss_pred Ec
Confidence 44
|
| >1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5 | Back alignment and structure |
|---|
Probab=87.07 E-value=0.28 Score=50.52 Aligned_cols=64 Identities=13% Similarity=0.148 Sum_probs=45.1
Q ss_pred ccCCCCEEEEeCCccccHHHHHHHHhc--CCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhc
Q 041113 157 DWIQFDVIIQIGSRITSKRISQMIEEC--FPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKV 222 (983)
Q Consensus 157 ~~~~aDlvl~iG~~~~~~~~~~~~~~~--~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~ 222 (983)
.+++||++|++|+++.-.....+.... ...++|.|+.++...+. ..++.|.+++.++|..|.+.
T Consensus 164 ~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~~--~~~~~i~~~~~~~l~~l~~~ 229 (235)
T 1s5p_A 164 ALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGN--EFAEKYYGPASQVVPEFVEK 229 (235)
T ss_dssp HHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC-----CCSEEEESCHHHHHHHHHHH
T ss_pred HHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCCc--cccEEEeCCHHHHHHHHHHH
Confidence 456899999999998654443333221 24568889998876654 46788999999999998764
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=86.83 E-value=3.4 Score=41.15 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=90.7
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..+.++..+.++.+.+.|+..+.+..+.+ + -.+.++++|+.++++..+.++. ..+++++....+ .+..++
T Consensus 18 ~~~~~~~~~~~~~~~~~G~~~iev~~~~~-~---~~~~i~~ir~~~~~~~~ig~~~--v~~~~~~~~a~~----~Gad~i 87 (205)
T 1wa3_A 18 ANSVEEAKEKALAVFEGGVHLIEITFTVP-D---ADTVIKELSFLKEKGAIIGAGT--VTSVEQCRKAVE----SGAEFI 87 (205)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEEETTST-T---HHHHHHHTHHHHHTTCEEEEES--CCSHHHHHHHHH----HTCSEE
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCCh-h---HHHHHHHHHHHCCCCcEEEecc--cCCHHHHHHHHH----cCCCEE
Confidence 46788888999999999999999877642 2 2345888888886677776653 447777655443 466677
Q ss_pred ecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHc-CCcEEeC
Q 041113 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRH-GKMAVVS 811 (983)
Q Consensus 733 EeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~-gi~~~~~ 811 (983)
=-|.. ..++.+..++.++|+..+- .+.. ......+.|+|++.+.+...+|+... .++.+.. +++++..
T Consensus 88 v~~~~-~~~~~~~~~~~g~~vi~g~--~t~~-----e~~~a~~~Gad~vk~~~~~~~g~~~~---~~l~~~~~~~pvia~ 156 (205)
T 1wa3_A 88 VSPHL-DEEISQFCKEKGVFYMPGV--MTPT-----ELVKAMKLGHTILKLFPGEVVGPQFV---KAMKGPFPNVKFVPT 156 (205)
T ss_dssp ECSSC-CHHHHHHHHHHTCEEECEE--CSHH-----HHHHHHHTTCCEEEETTHHHHHHHHH---HHHHTTCTTCEEEEB
T ss_pred EcCCC-CHHHHHHHHHcCCcEECCc--CCHH-----HHHHHHHcCCCEEEEcCccccCHHHH---HHHHHhCCCCcEEEc
Confidence 33443 3455566667899988732 2322 34555677899887766444454433 3333445 6887665
Q ss_pred CCC
Q 041113 812 AAF 814 (983)
Q Consensus 812 ~~~ 814 (983)
+..
T Consensus 157 GGI 159 (205)
T 1wa3_A 157 GGV 159 (205)
T ss_dssp SSC
T ss_pred CCC
Confidence 544
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=86.82 E-value=1.8 Score=45.55 Aligned_cols=38 Identities=13% Similarity=0.295 Sum_probs=29.3
Q ss_pred CceEEEeCCCC--CChhhHHH---HHHHhhC-CCEEEEEcCCCC
Q 041113 938 DNILLFLHGFL--GTGEEWIP---IMKAVSG-SARCISIDLPGH 975 (983)
Q Consensus 938 ~~~lv~lHG~~--~~~~~w~~---~~~~l~~-~~~vi~~Dl~G~ 975 (983)
.|+|||+||++ .+...|.. +.+.+.+ .+.|+++|.++.
T Consensus 34 ~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~pd~~~~ 77 (280)
T 1r88_A 34 PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAY 77 (280)
T ss_dssp SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTT
T ss_pred CCEEEEECCCCCCCChhhhhhcccHHHHHhcCCeEEEEECCCCC
Confidence 37999999995 57788986 4455654 499999999764
|
| >2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.76 E-value=0.42 Score=51.55 Aligned_cols=35 Identities=11% Similarity=0.230 Sum_probs=32.8
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPG 974 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G 974 (983)
+++|+|+||++++...|..+.+.|. ++|+++|+|+
T Consensus 46 ~~~l~~~hg~~g~~~~~~~~~~~l~--~~v~~~~~~~ 80 (316)
T 2px6_A 46 ERPLFLVHPIEGSTTVFHSLASRLS--IPTYGLQCTR 80 (316)
T ss_dssp SCCEEEECCTTCCSGGGHHHHHHCS--SCEEEECCCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcC--CCEEEEECCC
Confidence 6899999999999999999999996 9999999994
|
| >1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* | Back alignment and structure |
|---|
Probab=86.33 E-value=0.78 Score=48.73 Aligned_cols=67 Identities=12% Similarity=0.147 Sum_probs=47.0
Q ss_pred ccCCCCEEEEeCCccccHHHHHHHHhcC-CceEEEEcCCCCC-CC-CCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 157 DWIQFDVIIQIGSRITSKRISQMIEECF-PCTYILVDNHPCR-HD-PSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 157 ~~~~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~-~~-~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
.+.+||++|++|+++.-.....+..... ..++|.|+.++.. +. .....++.|.+|+..++..|.+.+
T Consensus 208 ~~~~~DlllviGTSl~V~Pa~~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l 277 (289)
T 1q1a_A 208 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEEL 277 (289)
T ss_dssp --CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHH
T ss_pred HhccCCEEEEEccCCChhhHHHHHHHHhcCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHc
Confidence 4679999999999987655554444443 3367788887753 10 123467889999999999998765
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.23 E-value=2.6 Score=50.03 Aligned_cols=105 Identities=11% Similarity=0.061 Sum_probs=78.8
Q ss_pred hHHHHHhhhhcc-CceEEEEEccch-hhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGC-NKHVLCVVGDIS-FLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~-~~~vv~i~GDGs-f~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|.|.+.++ +++.+|++-=|. ..-.+..|.+|.. .++|+++|.-+-....+- .+..
T Consensus 77 Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~~~~l~~A~~--~~vPlvvItg~~p~~~~~-----------------~~~~ 137 (616)
T 2pan_A 77 ASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASA--DSIPILCITGQAPRARLH-----------------KEDF 137 (616)
T ss_dssp HHHHHHHHHHHSTTCCEEEEECSTHHHHTSHHHHHHHHH--TTCCEEEEEEECCGGGTT-----------------TTCT
T ss_pred HHHHHHHHHHhcCCCceEEEeCCCchHHHHHHHHHHHHh--cCCCEEEEecCCcccccC-----------------cccc
Confidence 667889988887 777777654443 3445789999987 799999998876543111 0112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
+..|...+.+.+-....++.+++++...|++|+. .+||+.|++..|
T Consensus 138 Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d 188 (616)
T 2pan_A 138 QAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFD 188 (616)
T ss_dssp TCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred cccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCCceEEEEcchh
Confidence 4578999999998889999999999888888764 268999999865
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=86.05 E-value=3.5 Score=44.81 Aligned_cols=139 Identities=10% Similarity=0.111 Sum_probs=87.9
Q ss_pred EEEeecCCCCHHHHHHHHHHhhhcCCC-EEEEeccCC---------CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHH
Q 041113 646 ICALIDSNKSPVEVASIATTLVEEGFT-AIKLKVARR---------ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQ 715 (983)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~G~~-~~KiKig~~---------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~ 715 (983)
+..++ ...+++++.+.++.+.+.||. .|-+-++.+ .+++.-.+.++++|+++.--+.+.+=.| ++..
T Consensus 131 vivsI-~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~~~~PV~vKi~p~--~~~~ 207 (345)
T 3oix_A 131 HFLSL-VGMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYFTKPLGIKLPPY--FDIV 207 (345)
T ss_dssp CEEEE-CCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCC--CCHH
T ss_pred EEEEe-cCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHHhCCCeEEEECCC--CCHH
Confidence 33444 246789999999888778998 999998753 1334445677777777643333444444 6888
Q ss_pred HHHHHHhhcccCCCcee------------e--cC---------------CC--ChHHHHHHHhhc--CCcEEeCCCccCc
Q 041113 716 EALEFGFLIKDCDLQYI------------E--EP---------------VQ--NEEDIIKYCEES--GLPVALDETIDKF 762 (983)
Q Consensus 716 ~a~~~~~~l~~~~i~~i------------E--eP---------------~~--~~~~~~~l~~~~--~ipIa~dEs~~~~ 762 (983)
+..+.++.....++..+ . .| +. .++-++++++.. .+||.+.=-+.+.
T Consensus 208 ~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~~ipIIg~GGI~s~ 287 (345)
T 3oix_A 208 HFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTG 287 (345)
T ss_dssp HHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSH
T ss_pred HHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCCCCcEEEECCCCCh
Confidence 87777777666555432 1 11 11 134557788887 6999888888886
Q ss_pred CCChHHHHHhhcCCCceEEEEcCC-CcCCHH
Q 041113 763 QKDPLNMLEKYAHPGIVAIVIKPS-VIGGFE 792 (983)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~i~~k~~-~~GGl~ 792 (983)
.| ..+.+..|+|.|++--. ..+|..
T Consensus 288 ~d-----a~~~l~aGAd~V~igra~~~~gP~ 313 (345)
T 3oix_A 288 RD-----AFEHILCGASMVQIGTALHQEGPQ 313 (345)
T ss_dssp HH-----HHHHHHHTCSEEEESHHHHHHCTH
T ss_pred HH-----HHHHHHhCCCEEEEChHHHhcChH
Confidence 54 33344468888887544 334443
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=85.86 E-value=3.2 Score=45.25 Aligned_cols=132 Identities=12% Similarity=0.058 Sum_probs=84.2
Q ss_pred EEEEeecCCCCHHHHHHHHHHhh---hcCCCEEEEeccCC---------CChHHHHHHHHHHHHHcCCCcEEEEEcCCCC
Q 041113 645 KICALIDSNKSPVEVASIATTLV---EEGFTAIKLKVARR---------ADPIKDAEVIQEVRKKVGHRIELRVDANRNW 712 (983)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~---~~G~~~~KiKig~~---------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~ 712 (983)
|+..++ .+.+++++.+.++.+. +.|+..|-+-++.+ .+++.-.+.++++|++.. +.+.|=---.|
T Consensus 128 pvivsI-~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~~~--~PV~vKi~p~~ 204 (354)
T 4ef8_A 128 PLFLSM-SGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYP--HSFGVKMPPYF 204 (354)
T ss_dssp CEEEEE-CCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHHCC--SCEEEEECCCC
T ss_pred cEEEEe-ccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHhhC--CCeEEEecCCC
Confidence 444454 3457888888888776 57999999998753 134444678888998874 33333333346
Q ss_pred CHHHHHHHHhhcccCC-Ccee----------------ecC---------------CC--ChHHHHHHHhhc-CCcEEeCC
Q 041113 713 TYQEALEFGFLIKDCD-LQYI----------------EEP---------------VQ--NEEDIIKYCEES-GLPVALDE 757 (983)
Q Consensus 713 ~~~~a~~~~~~l~~~~-i~~i----------------EeP---------------~~--~~~~~~~l~~~~-~ipIa~dE 757 (983)
+.++..++++.+++.+ +.+| +.| +. +++-++++++.. .+||.+.=
T Consensus 205 d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~~~ipII~~G 284 (354)
T 4ef8_A 205 DFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKLIFGCG 284 (354)
T ss_dssp SHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTSEEEEES
T ss_pred CHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhCCCCCEEEEC
Confidence 7777777787776766 4433 111 11 244556777765 69998887
Q ss_pred CccCcCCChHHHHHhhcCCCceEEEEc
Q 041113 758 TIDKFQKDPLNMLEKYAHPGIVAIVIK 784 (983)
Q Consensus 758 s~~~~~~~~~~~~~~~~~~~~~~i~~k 784 (983)
-+.+..| ..+.+..|++.+++-
T Consensus 285 GI~s~~d-----a~~~l~aGAd~V~vg 306 (354)
T 4ef8_A 285 GVYTGED-----AFLHVLAGASMVQVG 306 (354)
T ss_dssp CCCSHHH-----HHHHHHHTEEEEEEC
T ss_pred CcCCHHH-----HHHHHHcCCCEEEEh
Confidence 7777653 333444688888764
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=85.45 E-value=2.3 Score=46.82 Aligned_cols=42 Identities=10% Similarity=0.168 Sum_probs=32.5
Q ss_pred CceEEEeCCCCC---Ch--hhHHHHHHHhhC--CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLG---TG--EEWIPIMKAVSG--SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~---~~--~~w~~~~~~l~~--~~~vi~~Dl~G~G~S~ 979 (983)
.|.|||+||.+. +. ..|..+...|+. .|.|+++|.|+.+...
T Consensus 112 ~Pvvv~~HGGg~~~g~~~~~~~~~~~~~la~~~g~~Vv~~dyR~~p~~~ 160 (365)
T 3ebl_A 112 FPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHR 160 (365)
T ss_dssp CEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTSEEEEECCCCTTTSC
T ss_pred ceEEEEEcCCccccCCCchhhHHHHHHHHHHHCCCEEEEeeCCCCCCCC
Confidence 589999999763 22 347888888865 6999999999876554
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=85.26 E-value=1.2 Score=54.08 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=31.8
Q ss_pred CceEEEeCCCCCChhh--HHHHH-HHhh-CCCEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEE--WIPIM-KAVS-GSARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~--w~~~~-~~l~-~~~~vi~~Dl~G~G~S 978 (983)
.|+||++||.+.++.. |.... ..+. ..|.|+++|+||+|.+
T Consensus 466 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~ 510 (710)
T 2xdw_A 466 HPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEY 510 (710)
T ss_dssp SCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTT
T ss_pred ccEEEEEcCCCCCcCCCcccHHHHHHHHhCCcEEEEEccCCCCCC
Confidence 6899999998876654 44433 4456 6799999999999976
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=85.18 E-value=1 Score=53.67 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=32.0
Q ss_pred CceEEEeCCCCCCh-------hhHHHHH----HHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTG-------EEWIPIM----KAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~-------~~w~~~~----~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
.|.||++||++.+. ..|...+ ..|++ .|.|+++|.||||.|..
T Consensus 51 ~P~vl~~hgyg~~~~~~~~~~~~~~~~~~~~~~~la~~Gy~Vv~~D~RG~g~S~g 105 (615)
T 1mpx_A 51 APIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEG 105 (615)
T ss_dssp EEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCCS
T ss_pred eeEEEEEcCCCCccccccccccccccccchhHHHHHhCCeEEEEECCCCCCCCCC
Confidence 47788899998754 2454322 55654 69999999999999874
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=84.90 E-value=2 Score=45.09 Aligned_cols=37 Identities=11% Similarity=0.018 Sum_probs=29.1
Q ss_pred ceEEEeCCCC--CChhhHHHHH---HHhhC-CCEEEEEcCCCC
Q 041113 939 NILLFLHGFL--GTGEEWIPIM---KAVSG-SARCISIDLPGH 975 (983)
Q Consensus 939 ~~lv~lHG~~--~~~~~w~~~~---~~l~~-~~~vi~~Dl~G~ 975 (983)
++|||+||++ .+...|..+. +.+.+ .+.|+++|.+|.
T Consensus 30 ~~v~llHG~~~~~~~~~w~~~~~~~~~l~~~~~~vv~pd~~~~ 72 (280)
T 1dqz_A 30 HAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQS 72 (280)
T ss_dssp SEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTT
T ss_pred CEEEEECCCCCCCCcccccccCcHHHHHhcCCeEEEEECCCCC
Confidence 5899999995 4888998753 45654 499999998864
|
| >1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2 | Back alignment and structure |
|---|
Probab=84.68 E-value=1.2 Score=47.68 Aligned_cols=111 Identities=8% Similarity=-0.003 Sum_probs=71.4
Q ss_pred eEEEEcc-CCCh-hHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCCCEEEE
Q 041113 89 GLLLVGA-VHNE-DEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQ 166 (983)
Q Consensus 89 PvIl~G~-g~~~-~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~aDlvl~ 166 (983)
.+|+.|+ |... +..+.+.+||++||+-|-.|-- -+ + .|.+|.+|- +|..|. .-.++|-|.
T Consensus 193 ~ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~-~v-d---~Gw~~~~~Q----VGqTGk---------~V~P~lYiA 254 (307)
T 1efp_A 193 RRVVSGGRGLGSKESFAIIEELADKLGAAVGASRA-AV-D---SGYAPNDWQ----VGQTGK---------VVAPELYVA 254 (307)
T ss_dssp SEEEEECGGGCSSSTTHHHHHHHHHHTCEEEECHH-HH-H---TTSSCGGGB----BSSSSB---------CCCCSEEEE
T ss_pred CEEEEcCCcCCCHHHHHHHHHHHHHhCCceeecHH-HH-h---CCCCChhhE----eccCCc---------ccCCceEEE
Confidence 4566655 5443 2346899999999998866531 11 0 255555432 344331 236899999
Q ss_pred eCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhc
Q 041113 167 IGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKV 222 (983)
Q Consensus 167 iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~ 222 (983)
+|-+=--.++.+ .+. +.+|-||.|++.. -+..+|..|++|+..++.+|.+.
T Consensus 255 ~GISGAiQHlaG----m~~s~~IVAIN~D~~Ap-IF~~ADygiVgDl~~v~P~L~~~ 306 (307)
T 1efp_A 255 VGISGAIQHLAG----MKDSKVIVAINKDEEAP-IFQIADYGLVGDLFSVVPELTGK 306 (307)
T ss_dssp ESCCCCHHHHTT----TTTCSEEEEEESCTTCG-GGGTCSEEEESCHHHHHHHHHHT
T ss_pred EeccCcHHHHhh----hccCCEEEEEeCCCCCC-cccccCeEEeeeHHHHHHHHHhh
Confidence 998743223222 223 3578899998743 24568999999999999999875
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=84.54 E-value=2.3 Score=50.12 Aligned_cols=105 Identities=10% Similarity=-0.019 Sum_probs=78.0
Q ss_pred hHHHHHhhhhccCceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+.+.+++.+|++-=| ++...++.+.+|.. .++|+++|.-+-....+-+ +..+
T Consensus 55 Aa~~A~GyAr~tgk~~v~~~tsGpG~~N~~~gl~~A~~--~~vPll~Itg~~p~~~~g~-----------------~~~Q 115 (590)
T 1v5e_A 55 GAMAAVMQSKFGGNLGVTVGSGGPGASHLINGLYDAAM--DNIPVVAILGSRPQRELNM-----------------DAFQ 115 (590)
T ss_dssp HHHHHHHHHHTTCCCCEEEECTTHHHHTTHHHHHHHHH--HTCCEEEEEEECCGGGTTT-----------------TCTT
T ss_pred HHHHHHHHHHHHCCCEEEEeCcChHHHHHHHHHHHHHh--cCCCEEEEcCCCCcccCCC-----------------Cccc
Confidence 67789998888888877777544 45556889999877 7999999988765431110 0123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-.....+++++++...+++|+. .+||+.| +..|-
T Consensus 116 ~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 116 ELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp CCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred ccCHHHHHHhhccEEEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence 468888999998889999999988887777753 2489999 88774
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=84.51 E-value=2.9 Score=49.02 Aligned_cols=111 Identities=7% Similarity=-0.022 Sum_probs=73.5
Q ss_pred hHHHHHhhhhccCceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+.+++++++|++-=| |..-.+..+.+|.. .++|+++|.-+-....+-+ ..+ .....+
T Consensus 71 Aa~~A~GyAr~tgkp~v~~~TsGpG~~N~~~gv~~A~~--~~vPll~itg~~~~~~~~~----------~~~--~~~~~q 136 (565)
T 2nxw_A 71 VGFAADAAARYSSTLGVAAVTYGAGAFNMVNAVAGAYA--EKSPVVVISGAPGTTEGNA----------GLL--LHHQGR 136 (565)
T ss_dssp HHHHHHHHHHHHTSCEEEEECTTHHHHTTHHHHHHHHH--TTCCEEEEEEECCTTCC------------CCC--C-----
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHh--hCCCEEEEeCCCChhhhcc----------Ccc--eeeecc
Confidence 56678888887788888877433 34556788999887 8999999988743321110 000 001112
Q ss_pred CCC-HHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 407 NIS-IQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~d-f~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
..| ...+.+.+-....++++++++...+++|+ ..+||+.|++..|-
T Consensus 137 ~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 187 (565)
T 2nxw_A 137 TLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQSRPVYLEIPRNM 187 (565)
T ss_dssp --CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHHHHTCCEEEEEEGGG
T ss_pred chhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEECChhh
Confidence 456 77888888778889998887766666654 34799999999764
|
| >2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.22 E-value=0.88 Score=49.77 Aligned_cols=65 Identities=14% Similarity=0.286 Sum_probs=49.0
Q ss_pred ccCCCCEEEEeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccC
Q 041113 157 DWIQFDVIIQIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQV 224 (983)
Q Consensus 157 ~~~~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~ 224 (983)
.+.+||++|++|+++.-.....+....+ ...+|.|+.++... ...++.|.+++..++..|.+.+.
T Consensus 252 ~~~~aDllLviGTSL~V~Paa~lv~~~~~~~~~v~IN~~~t~~---~~~dl~i~g~~~~vl~~L~~~lg 317 (354)
T 2hjh_A 252 DILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKH---AEFDLSLLGYCDDIAAMVAQKCG 317 (354)
T ss_dssp HTTTCCEEEEESCCCCEETGGGHHHHSCTTSCEEEEESSCCTT---SCCSEEEESCHHHHHHHHHHHHT
T ss_pred HHhhCCEEEEECcCCCchhHHHHHHHHhcCCcEEEEcCCCCCC---CCcCEEEeCCHHHHHHHHHHHcC
Confidence 4578999999999987655554444433 23678899888653 24788999999999999988764
|
| >1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R* | Back alignment and structure |
|---|
Probab=83.87 E-value=1.7 Score=46.69 Aligned_cols=113 Identities=11% Similarity=0.091 Sum_probs=73.1
Q ss_pred eEEEEcc-CCCh-hHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCCCEEEE
Q 041113 89 GLLLVGA-VHNE-DEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQ 166 (983)
Q Consensus 89 PvIl~G~-g~~~-~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~aDlvl~ 166 (983)
.+|+.|+ |..+ +..+.+.+||++||+-|-.|-- -+ + .|.+|.+|- +|..|. .-.++|-|.
T Consensus 198 ~ivVsgGrG~~~~e~f~~~~~LA~~Lga~vgaSR~-~v-d---~Gw~~~~~Q----VGqTGk---------~V~P~lYiA 259 (315)
T 1efv_A 198 KVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRA-AV-D---AGFVPNDMQ----VGQTGK---------IVAPELYIA 259 (315)
T ss_dssp SEEEEECGGGCSTGGGHHHHHHHHHHTCEEEECHH-HH-H---TTSSCGGGB----BSTTSB---------CCCCSEEEE
T ss_pred CEEEEcCCcCCChHHHHHHHHHHHHhCCceeecHH-HH-h---CCCCCHHhe----eccCCc---------ccCcceEEE
Confidence 3555555 5543 2356899999999998866531 11 0 255555442 344331 236799999
Q ss_pred eCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccC
Q 041113 167 IGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQV 224 (983)
Q Consensus 167 iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~ 224 (983)
+|-+=.-.++.+ .+. +.+|-||.|++.. -+..+|..|++|+..++.+|.+.++
T Consensus 260 ~GISGAiQHlaG----m~~s~~IVAIN~D~~Ap-If~~ADygiVgDl~~v~P~L~~~l~ 313 (315)
T 1efv_A 260 VGISGAIQHLAG----MKDSKTIVAINKDPEAP-IFQVADYGIVADLFKVVPEMTEILK 313 (315)
T ss_dssp ESCCCCHHHHTT----TTTCSEEEEEESCTTCG-GGGTCSEEEESCHHHHHHHHHHHTC
T ss_pred ecccCcHHHHhh----cccCCEEEEEeCCCCCC-cchhcCeEEeeeHHHHHHHHHHHHh
Confidence 998743223222 223 3578899998743 2456899999999999999998763
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=83.74 E-value=17 Score=38.24 Aligned_cols=124 Identities=16% Similarity=0.143 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccC-------------CCChH-HHHHHHHHHHHHcC-CCcE--EEEEcC-CCCCHH
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVAR-------------RADPI-KDAEVIQEVRKKVG-HRIE--LRVDAN-RNWTYQ 715 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~-------------~~~~~-~d~~~v~~vr~~~g-~~~~--l~vDaN-~~~~~~ 715 (983)
.+++++.+-++++.+.|...+||.=+. ...+. +=+++|++++++.. +++. =|.|+. .....+
T Consensus 87 g~~~~~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~ 166 (290)
T 2hjp_A 87 GNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQ 166 (290)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHH
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccHH
Confidence 488999999999999999999996432 01122 33789999988731 3444 457877 566799
Q ss_pred HHHHHHhhcccCC--CceeecCCCChHHHHHHHhhcC--CcEEeCCCccCcCCChHHHHHhhcCCC-ceEEE
Q 041113 716 EALEFGFLIKDCD--LQYIEEPVQNEEDIIKYCEESG--LPVALDETIDKFQKDPLNMLEKYAHPG-IVAIV 782 (983)
Q Consensus 716 ~a~~~~~~l~~~~--i~~iEeP~~~~~~~~~l~~~~~--ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~ 782 (983)
++++.++.+++.| ..|+|--+++.+.++++.+..+ +|+...-+..... .+..+.+.| +..+.
T Consensus 167 ~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~~~vP~i~n~~~~~~~-----~~~eL~~lG~v~~v~ 233 (290)
T 2hjp_A 167 EAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWPGKVPLVLVPTAYPQL-----TEADIAALSKVGIVI 233 (290)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCSSSHHHHHHHHHCCCSSCEEECGGGCTTS-----CHHHHHTCTTEEEEE
T ss_pred HHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHcCCCCCEEEeccCCCCC-----CHHHHHhcCCeeEEE
Confidence 9999999998764 5689984455799999999988 9988642211111 144555667 65544
|
| >1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A* | Back alignment and structure |
|---|
Probab=83.58 E-value=0.44 Score=49.39 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=47.0
Q ss_pred cccCCCCEEEEeCCccccHHHHHHH--HhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 156 KDWIQFDVIIQIGSRITSKRISQMI--EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 156 ~~~~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
..+++||++|++|+++.-....... ......++|.|+.++...+. ..++.|.+++.+++..|.+.+
T Consensus 176 ~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~l 243 (246)
T 1yc5_A 176 GLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDD--IATLKYNMDVVEFARRVMEEG 243 (246)
T ss_dssp HHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHH
T ss_pred HHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCCc--ceeEEEeCCHHHHHHHHHHHc
Confidence 3456899999999987654433232 12224568889998876643 358899999999999997654
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=83.40 E-value=3 Score=48.74 Aligned_cols=105 Identities=15% Similarity=0.021 Sum_probs=75.9
Q ss_pred hHHHHHhhhhccCceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+-+++++.+|++-=| |..-.+..+.+|.. .++|+++|.-+-....+- .+..+
T Consensus 53 Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~~~gi~~A~~--~~vPvl~itg~~~~~~~~-----------------~~~~Q 113 (549)
T 3eya_A 53 AAFAAGAEAQLSGELAVCAGSCGPGNLHLINGLFDCHR--NHVPVLAIAAHIPSSEIG-----------------SGYFQ 113 (549)
T ss_dssp HHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHHHHHHH--TTCCEEEEEEESCGGGTT-----------------SCCTT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCcHhhhHHHHHHHHh--hCCCEEEEeCCCchhhcC-----------------CCCCC
Confidence 56788888777788888876443 34455789999887 899999888765432110 01124
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~~~ 451 (983)
..|...+.+.+-....++.+++++...+++|+ ...||+.|++..|
T Consensus 114 ~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 162 (549)
T 3eya_A 114 ETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGD 162 (549)
T ss_dssp CCCHHHHTSTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEEEEEEEHH
T ss_pred ccCHHHHHhhhhheEEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 56888888888888899999988877777765 3579999999865
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=83.31 E-value=5.5 Score=42.11 Aligned_cols=100 Identities=12% Similarity=0.143 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHhhhcCCCEEEEeccCC------------CChHHHHHHHHHHHHHc-CCCcEE--EEEcCCCCCHHHHHH
Q 041113 655 SPVEVASIATTLVEEGFTAIKLKVARR------------ADPIKDAEVIQEVRKKV-GHRIEL--RVDANRNWTYQEALE 719 (983)
Q Consensus 655 ~~~~~~~~~~~~~~~G~~~~KiKig~~------------~~~~~d~~~v~~vr~~~-g~~~~l--~vDaN~~~~~~~a~~ 719 (983)
+++.+.+-++++.+.|...+||.=+.. .+.++-+++|++++++- ++++.| |.|+......+++++
T Consensus 92 ~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ 171 (295)
T 1xg4_A 92 SAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIE 171 (295)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHH
Confidence 789999999999999999999964420 12234567888888875 445544 567654456799999
Q ss_pred HHhhcccCC--CceeecCCCChHHHHHHHhhcCCcEEe
Q 041113 720 FGFLIKDCD--LQYIEEPVQNEEDIIKYCEESGLPVAL 755 (983)
Q Consensus 720 ~~~~l~~~~--i~~iEeP~~~~~~~~~l~~~~~ipIa~ 755 (983)
.++.+++.| ..|+|-+ ++.+.++++.+..++|+..
T Consensus 172 ra~ay~eAGAd~i~~e~~-~~~~~~~~i~~~~~iP~~~ 208 (295)
T 1xg4_A 172 RAQAYVEAGAEMLFPEAI-TELAMYRQFADAVQVPILA 208 (295)
T ss_dssp HHHHHHHTTCSEEEETTC-CSHHHHHHHHHHHCSCBEE
T ss_pred HHHHHHHcCCCEEEEeCC-CCHHHHHHHHHHcCCCEEE
Confidence 999998875 5688875 5589999999999999854
|
| >3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A* | Back alignment and structure |
|---|
Probab=83.13 E-value=0.64 Score=48.92 Aligned_cols=63 Identities=6% Similarity=0.028 Sum_probs=46.1
Q ss_pred cccCCCCEEEEeCCccccHHHHHHHH--hcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHH
Q 041113 156 KDWIQFDVIIQIGSRITSKRISQMIE--ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLL 220 (983)
Q Consensus 156 ~~~~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~ 220 (983)
..+.+||++|++|+++.-+...++.. .....+++.|+.++...+. ..++.|.+++..+|..|+
T Consensus 208 ~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~d~--~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 208 RELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATN--RFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp HHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEEEESSCCTTGG--GSSEEEESCHHHHHHHHH
T ss_pred HHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEEECCCCCCCCc--ceeEEEeCCHHHHHHHHh
Confidence 34578999999999986555443322 2234568889998876654 567889999999998875
|
| >4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.91 E-value=1.6 Score=49.06 Aligned_cols=65 Identities=14% Similarity=0.294 Sum_probs=49.3
Q ss_pred ccCCCCEEEEeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccC
Q 041113 157 DWIQFDVIIQIGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQV 224 (983)
Q Consensus 157 ~~~~aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~ 224 (983)
.+.+||++|++|+++.-....+.....+. .++|.|+.++... ...++.+.|++.+++..|.+.+.
T Consensus 390 ~~~~aDLlLVIGTSL~VyPaA~Lv~~a~~~~p~ViIN~ept~~---~~~Dl~l~G~cdevv~~L~~~LG 455 (492)
T 4iao_A 390 DILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKH---AEFDLSLLGYCDDIAAMVAQKCG 455 (492)
T ss_dssp HTTTCSEEEEESCCCCEETGGGHHHHSBTTSCEEEEESSCCTT---SCCSEEEESCHHHHHHHHHHHTT
T ss_pred HHhhCCEEEEeccCCCccchhhHHHHHhcCCcEEEEcCCCCCC---CCccEEEeCCHHHHHHHHHHHhC
Confidence 46799999999999876665544443333 3577799888642 34689999999999999998874
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=82.86 E-value=0.75 Score=56.25 Aligned_cols=42 Identities=10% Similarity=0.032 Sum_probs=33.0
Q ss_pred CceEEEeCCCCCChh--hHHHHHHHhhC-CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGE--EWIPIMKAVSG-SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~--~w~~~~~~l~~-~~~vi~~Dl~G~G~S~ 979 (983)
.|+||++||.+++.. .|......|.+ .|.|+++|+||+|.+.
T Consensus 509 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~G 553 (751)
T 2xe4_A 509 QPCMLYGYGSYGLSMDPQFSIQHLPYCDRGMIFAIAHIRGGSELG 553 (751)
T ss_dssp CCEEEECCCCTTCCCCCCCCGGGHHHHTTTCEEEEECCTTSCTTC
T ss_pred ccEEEEECCCCCcCCCCcchHHHHHHHhCCcEEEEEeeCCCCCcC
Confidence 689999999887655 46665556644 5999999999999753
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=82.82 E-value=3.4 Score=43.70 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccCC------------CChHHHHHHHHHHHHHc-CCCcEE--EEEcCCCCCHHHHH
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVARR------------ADPIKDAEVIQEVRKKV-GHRIEL--RVDANRNWTYQEAL 718 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~~------------~~~~~d~~~v~~vr~~~-g~~~~l--~vDaN~~~~~~~a~ 718 (983)
.+++.+.+-++.+.+.|...+||.=+.. -+.++=+++|++.+++- ++++.| |.|+......++|+
T Consensus 95 g~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai 174 (298)
T 3eoo_A 95 GGAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAI 174 (298)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHH
Confidence 4788889999999999999999953210 12344578998888875 456554 57887666789999
Q ss_pred HHHhhcccC--CCceeecCCCChHHHHHHHhhcCCcEEeC
Q 041113 719 EFGFLIKDC--DLQYIEEPVQNEEDIIKYCEESGLPVALD 756 (983)
Q Consensus 719 ~~~~~l~~~--~i~~iEeP~~~~~~~~~l~~~~~ipIa~d 756 (983)
+.++...+. +..|+|-+- +.++++++.+..++|+...
T Consensus 175 ~Ra~ay~~AGAD~if~~~~~-~~ee~~~~~~~~~~Pl~~n 213 (298)
T 3eoo_A 175 ERAIAYVEAGADMIFPEAMK-TLDDYRRFKEAVKVPILAN 213 (298)
T ss_dssp HHHHHHHHTTCSEEEECCCC-SHHHHHHHHHHHCSCBEEE
T ss_pred HHHHhhHhcCCCEEEeCCCC-CHHHHHHHHHHcCCCeEEE
Confidence 999998876 577998875 5999999999998998553
|
| >3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.78 E-value=0.81 Score=48.83 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=47.4
Q ss_pred ccCCCCEEEEeCCccccHHHHHHH--HhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 157 DWIQFDVIIQIGSRITSKRISQMI--EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 157 ~~~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
.+.+||++|++|+++.-+...++. ......+++.|+..+...+ ...++.|.+++.+++..|.+.+
T Consensus 203 ~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~~d--~~adl~i~g~~~evl~~L~~~L 269 (318)
T 3k35_A 203 ASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHD--RHADLRIHGYVDEVMTRLMKHL 269 (318)
T ss_dssp HHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCTTG--GGCSEEECSCHHHHHHHHHHHH
T ss_pred HHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCCCC--CcccEEEeCCHHHHHHHHHHHh
Confidence 356899999999998655543332 1223456788998886554 3568889999999999998765
|
| >1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C* | Back alignment and structure |
|---|
Probab=82.77 E-value=0.75 Score=43.16 Aligned_cols=140 Identities=10% Similarity=0.085 Sum_probs=71.8
Q ss_pred hHHHHHHHHhcCCceEEEEccCCC-hhHHH---HHHHHHHhcCCcEE--eccccCccchhhhhhhhhhcccccc--cc-c
Q 041113 75 QMAEVLELVQGVNKGLLLVGAVHN-EDEIW---AVLHLARHIRWPVV--ADILSGLRLRKLLASFLETEQNILF--LD-H 145 (983)
Q Consensus 75 ~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~---~l~~lae~l~~Pv~--~t~~sg~~~~~~kg~~~~~hp~~~~--~g-~ 145 (983)
..++++++|..|++.+|+-|+|.. ..+.. ++.++.+..|+-|= -.|-+ |-.|.. =+.|. .+ -
T Consensus 12 ~~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVA--------GRMPGh-mNVLLAEA~VP 82 (180)
T 1pno_A 12 SAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVA--------GRMPGH-MNVLLAEANVP 82 (180)
T ss_dssp CHHHHHHHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTC--------TTSTTH-HHHHHHHTTCC
T ss_pred CHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccc--------ccCCCc-ceEEEEeeCCC
Confidence 567889999999999999999853 33333 45555555565542 22222 223211 00000 00 0
Q ss_pred hhh-hccCccccccCCCCEEEEeCCccccHHHHH---HH--------HhcCCceEEEEcCCC--CCCC---C--CCCeeE
Q 041113 146 LDH-ALLSESVKDWIQFDVIIQIGSRITSKRISQ---MI--------EECFPCTYILVDNHP--CRHD---P--SHSVTH 206 (983)
Q Consensus 146 ~g~-~~~~~~~~~~~~aDlvl~iG~~~~~~~~~~---~~--------~~~~~~~~i~id~d~--~~~~---~--~~~~~~ 206 (983)
|+. +-....+..+.+.|++|+||..-.-..... .+ .-++.+++|.+..+- ..-+ + +...+.
T Consensus 83 Yd~v~EMdeIN~df~~tDv~lVIGANDvvNpaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~ 162 (180)
T 1pno_A 83 YDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNTM 162 (180)
T ss_dssp GGGEEEHHHHGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGTSTTEE
T ss_pred HHHHhhHHHHhhhhhhcCEEEEeccccccCchhccCCCCCcCCCeeechhhCCEEEEEECCCCCCcCCCcCcceecCCce
Confidence 010 001123445779999999998632211110 00 111223455554321 1111 1 233456
Q ss_pred EEEcCHHHHHHHHHhcc
Q 041113 207 RIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 207 ~i~~d~~~~l~~L~~~~ 223 (983)
-+.||++..+++|...+
T Consensus 163 MlfGDAK~~~~~l~~~l 179 (180)
T 1pno_A 163 MLFGDAKKMTEQIVQAM 179 (180)
T ss_dssp EEESCHHHHHHHHHHHH
T ss_pred EEeccHHHHHHHHHHHh
Confidence 67899999999987643
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=82.74 E-value=3.2 Score=44.10 Aligned_cols=38 Identities=11% Similarity=0.012 Sum_probs=30.0
Q ss_pred CceEEEeCCC--CCChhhHHHH---HHHhhC-CCEEEEEcCCCC
Q 041113 938 DNILLFLHGF--LGTGEEWIPI---MKAVSG-SARCISIDLPGH 975 (983)
Q Consensus 938 ~~~lv~lHG~--~~~~~~w~~~---~~~l~~-~~~vi~~Dl~G~ 975 (983)
.|+|||+||+ +++...|... .+.+.+ .+.|+++|.++.
T Consensus 34 ~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~p~~~~~ 77 (304)
T 1sfr_A 34 SPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQS 77 (304)
T ss_dssp BCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTT
T ss_pred CCEEEEeCCCCCCCCcchhhcCCCHHHHHhcCCeEEEEECCCCC
Confidence 6899999999 6788889875 355554 499999999764
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=82.60 E-value=1.9 Score=51.12 Aligned_cols=106 Identities=13% Similarity=-0.032 Sum_probs=73.3
Q ss_pred hHHHHHhhhhccCceEEEEEccch-hhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDIS-FLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDGs-f~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+-+++++++|++-=|. ..-.+..+.+|.. .++|+++|.-+-....+-+ +..+
T Consensus 81 Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~~~gia~A~~--~~vPlv~ItG~~~~~~~g~-----------------~~~Q 141 (604)
T 2x7j_A 81 AGFFALGLAKAKQRPVLLICTSGTAAANFYPAVVEAHY--SRVPIIVLTADRPHELREV-----------------GAPQ 141 (604)
T ss_dssp HHHHHHHHHHHHTSCEEEEECSSHHHHTTHHHHHHHHH--HTCCEEEEEEECCGGGSSS-----------------CCTT
T ss_pred HHHHHHHHHHhhCCCEEEEECChhHHHHHHHHHHHHhh--cCCCEEEEeCCCCHHHhCC-----------------CCCC
Confidence 566888887777888888774443 4456789999987 7999999987754421110 1123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHH-------HHHHHHhhh----c-cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVE-------LEEALSMSQ----H-LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~e-------L~~aL~~a~----~-~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-....+|+++++ +...+++|+ . .+||+.|++..|-
T Consensus 142 ~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d~ 199 (604)
T 2x7j_A 142 AINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLRE 199 (604)
T ss_dssp CCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECCS
T ss_pred cCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccCc
Confidence 45666777777777888887775 555555554 3 4699999999874
|
| >1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* | Back alignment and structure |
|---|
Probab=82.39 E-value=0.57 Score=48.74 Aligned_cols=65 Identities=14% Similarity=0.224 Sum_probs=46.2
Q ss_pred cccCCCCEEEEeCCccccHHHHHHH--HhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhc
Q 041113 156 KDWIQFDVIIQIGSRITSKRISQMI--EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKV 222 (983)
Q Consensus 156 ~~~~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~ 222 (983)
..+.+||++|++|+++.-....... ......++|.|+.++...+. ..++.|.+++..+|..|.+.
T Consensus 179 ~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~ 245 (253)
T 1ma3_A 179 EEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADP--IFDVKIIGKAGEVLPKIVEE 245 (253)
T ss_dssp HHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGG--GCSEEEESCHHHHHHHHHHH
T ss_pred HHHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCCC--ceeEEEeCCHHHHHHHHHHH
Confidence 3457899999999987654433332 12224568889998876643 35888999999999998764
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=82.38 E-value=2.9 Score=49.02 Aligned_cols=107 Identities=13% Similarity=0.066 Sum_probs=77.5
Q ss_pred hHHHHHhhhhccCceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+.+++++.+|++-=| |..-.+..+.+|.. .++|+++|.-+-....+-. .-+..+
T Consensus 57 Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~~~gi~~A~~--~~vPll~itg~~~~~~~~~---------------~~~~~Q 119 (564)
T 2q28_A 57 AGYAAAASGFLTQKPGICLTVSAPGFLNGLTALANATV--NGFPMIMISGSSDRAIVDL---------------QQGDYE 119 (564)
T ss_dssp HHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHHHHHHH--HTCCEEEEEEECCHHHHHT---------------TSCCTT
T ss_pred HHHHHHHHHHHhCCCEEEEEccCchHHHHHHHHHHHHh--cCCCEEEEeCCCCccccCC---------------CCCccc
Confidence 56678888777788877776444 34555788999887 7999999988754321100 001124
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
..|...+.+.+-....++++++++...+++|+. .+||+.|++..|
T Consensus 120 ~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 120 ELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp CCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred cccHHHHHHHhhheeeecCCHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 578889999998889999998888777777653 469999999987
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=82.38 E-value=4.4 Score=43.00 Aligned_cols=111 Identities=19% Similarity=0.169 Sum_probs=79.2
Q ss_pred eEEEEeec-CCCCHHHHHHHHHHhhhcCCCEEEEeccCC------------CChHHHHHHHHHHHHHc---CCCcEE--E
Q 041113 644 IKICALID-SNKSPVEVASIATTLVEEGFTAIKLKVARR------------ADPIKDAEVIQEVRKKV---GHRIEL--R 705 (983)
Q Consensus 644 i~~~~~~~-~~~~~~~~~~~~~~~~~~G~~~~KiKig~~------------~~~~~d~~~v~~vr~~~---g~~~~l--~ 705 (983)
+|+.+-.. +..+++.+.+.++.+.+.|...+||.=... -+.++=+++|++.|++- |+++.| |
T Consensus 89 ~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~AR 168 (307)
T 3lye_A 89 PPLIADMDTGYGGPIMVARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIAR 168 (307)
T ss_dssp CCEEEECTTCSSSHHHHHHHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 45544332 224688888889999999999999953210 12334467888887764 777665 5
Q ss_pred EEcCCCCCHHHHHHHHhhcccC--CCceeecCCCChHHHHHHHhhcC-CcEEe
Q 041113 706 VDANRNWTYQEALEFGFLIKDC--DLQYIEEPVQNEEDIIKYCEESG-LPVAL 755 (983)
Q Consensus 706 vDaN~~~~~~~a~~~~~~l~~~--~i~~iEeP~~~~~~~~~l~~~~~-ipIa~ 755 (983)
.|+......++|++.++...+. +..|+|-+- +.++++++.+..+ +|+..
T Consensus 169 TDa~~~~gldeAi~Ra~ay~eAGAD~ifi~~~~-~~~~~~~i~~~~~~~Pv~~ 220 (307)
T 3lye_A 169 TDALQSLGYEECIERLRAARDEGADVGLLEGFR-SKEQAAAAVAALAPWPLLL 220 (307)
T ss_dssp ECCHHHHCHHHHHHHHHHHHHTTCSEEEECCCS-CHHHHHHHHHHHTTSCBEE
T ss_pred chhhhccCHHHHHHHHHHHHHCCCCEEEecCCC-CHHHHHHHHHHccCCceeE
Confidence 7887666789999999988765 577998654 5899999998874 78754
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=82.37 E-value=5.9 Score=41.87 Aligned_cols=101 Identities=20% Similarity=0.279 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccCC------------CChHHHHHHHHHHHHHc---CCCcEE--EEEcCCCCCHHH
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVARR------------ADPIKDAEVIQEVRKKV---GHRIEL--RVDANRNWTYQE 716 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~~------------~~~~~d~~~v~~vr~~~---g~~~~l--~vDaN~~~~~~~ 716 (983)
.+++.+.+.++.+.+.|...+||.=... -+.++=+++|++.+++. ++++.| |.|+......++
T Consensus 92 g~~~~v~~tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~glde 171 (302)
T 3fa4_A 92 GGPIMVARTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQTHGYEE 171 (302)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecccccCCHHH
Confidence 4688888889999999999999852210 13345578888887763 777765 588876678999
Q ss_pred HHHHHhhcccC--CCceeecCCCChHHHHHHHhhc-CCcEEe
Q 041113 717 ALEFGFLIKDC--DLQYIEEPVQNEEDIIKYCEES-GLPVAL 755 (983)
Q Consensus 717 a~~~~~~l~~~--~i~~iEeP~~~~~~~~~l~~~~-~ipIa~ 755 (983)
|++.++...+. +..|+|-+-. .++++++.+.. ++|+..
T Consensus 172 Ai~Ra~ay~eAGAD~ifi~g~~~-~~ei~~~~~~~~~~Pl~~ 212 (302)
T 3fa4_A 172 SVARLRAARDAGADVGFLEGITS-REMARQVIQDLAGWPLLL 212 (302)
T ss_dssp HHHHHHHHHTTTCSEEEETTCCC-HHHHHHHHHHTTTSCEEE
T ss_pred HHHHHHHHHHcCCCEEeecCCCC-HHHHHHHHHHhcCCceeE
Confidence 99999988775 5678887654 89999999887 478755
|
| >1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=82.36 E-value=2.1 Score=47.64 Aligned_cols=104 Identities=14% Similarity=0.099 Sum_probs=62.5
Q ss_pred hHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC-
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH- 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~- 406 (983)
++.+|+|++++-.|+++...|.|-..| ...|.+++. .++|+++++.+-.+.+.-... + +.+
T Consensus 76 a~~~a~Gaa~aG~r~~~~ts~~G~~~~-~d~l~~aa~--~~~P~Vi~~~~~~~~~~g~~~----------~-----~~~s 137 (395)
T 1yd7_A 76 SIAAAIGASWAGAKAMTATSGPGFSLM-QENIGYAVM--TETPVVIVDVQRSGPSTGQPT----------L-----PAQG 137 (395)
T ss_dssp HHHHHHHHHHTTCCEEEEEETTHHHHH-TTTCC------CCCCEEEEEEC------------------------------
T ss_pred HHHHHHHHHHhCCcEEEEeCchHHHHH-HHHHHHHHh--cCCCEEEEEeeCCCCCCCCCc----------c-----cchh
Confidence 789999999987777777888887664 566776765 789999998887765421000 0 000
Q ss_pred CCCHHHHHH--HcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEE
Q 041113 407 NISIQNLCL--AHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVE 449 (983)
Q Consensus 407 ~~df~~la~--a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~ 449 (983)
+.-....+. .+|.....+.+++|..+.+..|+ +.+.|+++...
T Consensus 138 d~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~~~~PVi~~~~ 186 (395)
T 1yd7_A 138 DIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKYRTPVILLTD 186 (395)
T ss_dssp -----------CCCCEEECCCSHHHHHHHHHHHHHHHHHHTSEEEEEEC
T ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEcc
Confidence 000112222 35788899999999998888887 45789888764
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=82.28 E-value=1.3 Score=53.36 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=31.7
Q ss_pred CceEEEeCCCCCChh--hHHHHHHHh-hCCCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGE--EWIPIMKAV-SGSARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~--~w~~~~~~l-~~~~~vi~~Dl~G~G~S~ 979 (983)
.|+||++||.+.+.. .|......| ...|.|+++|+||+|.+.
T Consensus 446 ~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g 490 (695)
T 2bkl_A 446 APTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYG 490 (695)
T ss_dssp CCEEEECCCCTTCCCCCCCCGGGHHHHHTTCEEEEECCTTSSTTC
T ss_pred ccEEEEECCCCccccCCCcCHHHHHHHhCCCEEEEEecCCCCCcC
Confidence 689999999766554 555554444 567999999999988763
|
| >2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C* | Back alignment and structure |
|---|
Probab=82.20 E-value=0.81 Score=43.98 Aligned_cols=140 Identities=11% Similarity=0.114 Sum_probs=73.0
Q ss_pred hhHHHHHHHHhcCCceEEEEccCCC-hhHHH---HHHHHHHhcCCcEE--eccccCccchhhhhhhhhhcccccccc---
Q 041113 74 CQMAEVLELVQGVNKGLLLVGAVHN-EDEIW---AVLHLARHIRWPVV--ADILSGLRLRKLLASFLETEQNILFLD--- 144 (983)
Q Consensus 74 ~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~---~l~~lae~l~~Pv~--~t~~sg~~~~~~kg~~~~~hp~~~~~g--- 144 (983)
...++++++|..|++.+|+-|+|.. ..+.. ++.++.+..|+-|= -.|-+| -.|. |-+.| +-
T Consensus 34 ~~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAG--------RMPG-hMNVL-LAEA~ 103 (203)
T 2fsv_C 34 GSAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAG--------RMPG-HMNVL-LAEAN 103 (203)
T ss_dssp CCHHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCS--------SSTT-HHHHH-HHHTT
T ss_pred cCHHHHHHHHHhCCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEEeccccc--------CCCC-CccEE-EEEec
Confidence 3567889999999999999999853 33333 45555555565542 222222 2321 11100 00
Q ss_pred -chhhh-ccCccccccCCCCEEEEeCCccccHHHHH---HH--------HhcCCceEEEEcCCC--CCC---CC--CCCe
Q 041113 145 -HLDHA-LLSESVKDWIQFDVIIQIGSRITSKRISQ---MI--------EECFPCTYILVDNHP--CRH---DP--SHSV 204 (983)
Q Consensus 145 -~~g~~-~~~~~~~~~~~aDlvl~iG~~~~~~~~~~---~~--------~~~~~~~~i~id~d~--~~~---~~--~~~~ 204 (983)
-|+.. -....+..+.+.|++|+||..-.-..... .+ .-++.+++|.+..+- ..- ++ +...
T Consensus 104 VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~n 183 (203)
T 2fsv_C 104 VPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVWKAGTVLFIKRSMASGYAGVENELFFRNN 183 (203)
T ss_dssp CCGGGEEEHHHHGGGSTTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGGSTT
T ss_pred CCHHHHhhHHHHhhhhhhcCEEEEeccccccCchhhcCCCCCcCCCeeeccccCCEEEEEECCCCCCcCCCcCcceecCC
Confidence 01100 01133445789999999998632211110 00 111223455554322 111 11 2334
Q ss_pred eEEEEcCHHHHHHHHHhcc
Q 041113 205 THRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 205 ~~~i~~d~~~~l~~L~~~~ 223 (983)
+.-+.||++..+++|...+
T Consensus 184 t~MlfGDAK~~~~~l~~~l 202 (203)
T 2fsv_C 184 TMMLFGDAKKMTEQIVQAM 202 (203)
T ss_dssp EEEEESCHHHHHHHHHHHC
T ss_pred ceEEeccHHHHHHHHHHHh
Confidence 5667899999999988654
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=82.18 E-value=2 Score=50.01 Aligned_cols=106 Identities=13% Similarity=0.039 Sum_probs=74.0
Q ss_pred hHHHHHhhhhccCceEEEEEcc-chhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGD-ISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GD-Gsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+.+++++++|++-= -|..-.++.+.++.. .++|+++|.-+-....+-+ +..+
T Consensus 50 Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~~l~~A~~--~~~Pll~itg~~~~~~~~~-----------------~~~q 110 (528)
T 1q6z_A 50 VVGIADGYAQASRKPAFINLHSAAGTGNAMGALSNAWN--SHSPLIVTAGQQTRAMIGV-----------------EALL 110 (528)
T ss_dssp HHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHHHHHHH--TTCCEEEEEEECCHHHHTT-----------------TCTT
T ss_pred HHHHHHHHHHHhCCCEEEEEcCChHHHHHHHHHHHHhh--cCCCEEEEeCCCcccccCC-----------------Cccc
Confidence 6678889888888887775533 344456789999877 8999999887755432110 0012
Q ss_pred C-CCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 N-ISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~-~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
. +|...+.+.+-....++++++++...+.+|+. .+||+.|++..|-
T Consensus 111 ~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~ 162 (528)
T 1q6z_A 111 TNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD 162 (528)
T ss_dssp CCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred ccccHHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 2 46777777776678888888887777776653 3589999999875
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=82.09 E-value=4.6 Score=47.35 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=75.0
Q ss_pred hHHHHHhhhhccCceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+.+++ +++|++-=| |..-.++.+.+|.. .++|+++|.-+-.....-+. .......+...
T Consensus 53 Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gia~A~~--~~vPll~itg~~~~~~~~~~---------~~~~~~~g~~~ 120 (568)
T 2wvg_A 53 CGFSAEGYARAKG-AAAAVVTYSVGALSAFDAIGGAYA--ENLPVILISGAPNNNDHAAG---------HVLHHALGKTD 120 (568)
T ss_dssp HHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHHHHHHH--TTCCEEEEEEECCGGGTTTT---------CBCTTSCSSSC
T ss_pred HHHHHHHHHHhhC-CeEEEEeCCCCHHHHHHHHHHHhh--hCCCEEEEeCCCChhHhccC---------cceeeeccccc
Confidence 5678888877777 877776433 33445788888877 89999999887665422110 00000001111
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-....++++++++...+++|+ ...||+.|++..|-
T Consensus 121 ~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~dv 170 (568)
T 2wvg_A 121 YHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNI 170 (568)
T ss_dssp CCHHHHHHTTSCSCEEEECSGGGHHHHHHHHHHHHHHHTCCEEEEEEGGG
T ss_pred hHHHHHHHHhhEeEEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhH
Confidence 23678888888888999999887766666554 44699999999875
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=81.79 E-value=4 Score=47.82 Aligned_cols=113 Identities=11% Similarity=0.012 Sum_probs=74.8
Q ss_pred hHHHHHhhhhccCceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+.+++ +.+|++-=| |..-.++.+.+|.. .++|+++|.-+-.....-+. .......+...
T Consensus 53 Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gia~A~~--~~vPll~itg~~~~~~~~~~---------~~~~~~~g~~~ 120 (566)
T 2vbi_A 53 CGFSAEGYARSNG-AAAAVVTFSVGAISAMNALGGAYA--ENLPVILISGAPNSNDQGTG---------HILHHTIGKTD 120 (566)
T ss_dssp HHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHHHHHHH--TTCCEEEEEEECCGGGTTTT---------CBCTTSCSSSC
T ss_pred HHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHHHHHHHh--hCCCEEEEECCCChHHhccC---------ceeeeeccCcc
Confidence 6678888887777 877776433 24445788998877 89999999887654322110 00000001111
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-....++++++++...+++|+ ...||+.|++..|-
T Consensus 121 ~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d~ 170 (566)
T 2vbi_A 121 YSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERKPAYLDIACNI 170 (566)
T ss_dssp CTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHHTCCEEEEEETTT
T ss_pred hHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhh
Confidence 23788888988888889998877666666554 44699999999774
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=81.52 E-value=17 Score=37.84 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccCC------CChHHHHHHHHHHHHHc---CCCcEEE--EEcCCC---C----CHH
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVARR------ADPIKDAEVIQEVRKKV---GHRIELR--VDANRN---W----TYQ 715 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~~------~~~~~d~~~v~~vr~~~---g~~~~l~--vDaN~~---~----~~~ 715 (983)
.+++++.+-++++.+.|...+||.=+.. -+.++=+++|++++++- |.++.|. -|+... . ..+
T Consensus 89 ~~~~~~~~~v~~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~ 168 (275)
T 2ze3_A 89 HAPEDVRRTVEHFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLA 168 (275)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHH
Confidence 4789999999999999999999974420 12345578888888773 5665554 566432 1 368
Q ss_pred HHHHHHhhcccCC--CceeecCCCChHHHHHHHhhcCCcEEeC
Q 041113 716 EALEFGFLIKDCD--LQYIEEPVQNEEDIIKYCEESGLPVALD 756 (983)
Q Consensus 716 ~a~~~~~~l~~~~--i~~iEeP~~~~~~~~~l~~~~~ipIa~d 756 (983)
++++.++.+++.| ..|+|-+ ++.+..+++.+..++|+..-
T Consensus 169 ~ai~Ra~ay~eAGAd~i~~e~~-~~~~~~~~i~~~~~~P~n~~ 210 (275)
T 2ze3_A 169 ETVRRGQAYADAGADGIFVPLA-LQSQDIRALADALRVPLNVM 210 (275)
T ss_dssp HHHHHHHHHHHTTCSEEECTTC-CCHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHCCCCEEEECCC-CCHHHHHHHHHhcCCCEEEe
Confidence 9999999988754 5688885 55899999999999998543
|
| >1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4 | Back alignment and structure |
|---|
Probab=81.33 E-value=0.83 Score=43.02 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=73.0
Q ss_pred hHHHHHHHHhcCCceEEEEccCCC-hhHH---HHHHHHHHhcCCcEE--eccccCccchhhhhhhhhhcccccccc----
Q 041113 75 QMAEVLELVQGVNKGLLLVGAVHN-EDEI---WAVLHLARHIRWPVV--ADILSGLRLRKLLASFLETEQNILFLD---- 144 (983)
Q Consensus 75 ~i~~~~~~L~~AkrPvIl~G~g~~-~~~~---~~l~~lae~l~~Pv~--~t~~sg~~~~~~kg~~~~~hp~~~~~g---- 144 (983)
..++++++|..|++.+|+-|+|.. ..+. .++.++.+..|+-|= -.|-+| -.|.. =+.| +-
T Consensus 11 ~~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAG--------RMPGh-MNVL-LAEA~V 80 (184)
T 1d4o_A 11 NLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVAG--------RMPGQ-LNVL-LAEAGV 80 (184)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTTCS--------SSTTH-HHHH-HHHHTC
T ss_pred CHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccc--------cCCCc-ceEE-EEEecC
Confidence 467888999999999999999843 3333 355555555565542 222222 22211 0000 00
Q ss_pred chhhh-ccCccccccCCCCEEEEeCCccccHHHHHHHH-----------hcCCceEEEEcCCC--CCCC---C--CCCee
Q 041113 145 HLDHA-LLSESVKDWIQFDVIIQIGSRITSKRISQMIE-----------ECFPCTYILVDNHP--CRHD---P--SHSVT 205 (983)
Q Consensus 145 ~~g~~-~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~-----------~~~~~~~i~id~d~--~~~~---~--~~~~~ 205 (983)
-|+.. -....+..+.+.|++|+||..-.-.....-.+ -+..+++|.+..+- ..-+ + +...+
T Consensus 81 PYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt 160 (184)
T 1d4o_A 81 PYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNT 160 (184)
T ss_dssp CGGGEEEHHHHGGGGGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGGGSSCEEEEESSSCCCTTCCCCGGGGSTTE
T ss_pred CHHHHHhHHHHhhhhhhcCEEEEecCCccCCCccccCCCCCccCCeeeehhhCCEEEEEECCCCCCcCCCcCcceecCCc
Confidence 00000 01133445779999999998743322221100 11123455554321 1111 1 13345
Q ss_pred EEEEcCHHHHHHHHHhcc
Q 041113 206 HRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 206 ~~i~~d~~~~l~~L~~~~ 223 (983)
.-+.||++..+++|...+
T Consensus 161 ~MlfGDAK~~~~~l~~~l 178 (184)
T 1d4o_A 161 AMLLGDAKKTCDALQAKV 178 (184)
T ss_dssp EEEESCHHHHHHHHHHHH
T ss_pred eEEeccHHHHHHHHHHHH
Confidence 667999999999988765
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=81.11 E-value=2.8 Score=49.58 Aligned_cols=106 Identities=14% Similarity=0.030 Sum_probs=74.4
Q ss_pred hHHHHHhhhhccCceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+-+++++.+|++-=| |....+..+.+|.. .++|+++|.-.-....+-+ +..+
T Consensus 62 Aa~aA~GyAr~tg~~gv~~~TsGpG~~N~~~gia~A~~--~~vPvl~itG~~~~~~~~~-----------------~~~Q 122 (603)
T 4feg_A 62 GAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDARE--DHVPVLALIGQFGTTGMNM-----------------DTFQ 122 (603)
T ss_dssp HHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHHHHHHH--TTCCEEEEEEECCTTTTTS-----------------CCTT
T ss_pred HHHHHHHHHHHhCCceEEEecCCchHHHHHHHHHHHHH--cCCCEEEEecCCcccccCC-----------------Cccc
Confidence 56678888777788888876433 34556789999987 8999999887654321110 0123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-....++.+++++...+.+|+ ..+||+.|+|..|-
T Consensus 123 ~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~dv 172 (603)
T 4feg_A 123 EMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDL 172 (603)
T ss_dssp CCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHHHTSEEEEEEETTG
T ss_pred cccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhh
Confidence 45677777777778888988887766666654 45899999999874
|
| >1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A* | Back alignment and structure |
|---|
Probab=81.07 E-value=0.85 Score=43.95 Aligned_cols=139 Identities=14% Similarity=0.140 Sum_probs=73.4
Q ss_pred hHHHHHHHHhcCCceEEEEccCCC-hhHHH---HHHHHHHhcCCcEE--eccccCccchhhhhhhhhhcccccccc----
Q 041113 75 QMAEVLELVQGVNKGLLLVGAVHN-EDEIW---AVLHLARHIRWPVV--ADILSGLRLRKLLASFLETEQNILFLD---- 144 (983)
Q Consensus 75 ~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~---~l~~lae~l~~Pv~--~t~~sg~~~~~~kg~~~~~hp~~~~~g---- 144 (983)
..++++++|..|++.+|+-|+|.. ..+.. ++.++.+..|+-|= -.|-+| -.|. |-+.| +-
T Consensus 34 ~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAG--------RMPG-hMNVL-LAEA~V 103 (207)
T 1djl_A 34 NLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVAG--------RMPG-QLNVL-LAEAGV 103 (207)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCS--------SSTT-HHHHH-HHHTTC
T ss_pred CHHHHHHHHHhCCeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeCccCC--------CCCC-CCcEE-EEEeCC
Confidence 457888999999999999999853 33333 45555555565542 222222 2321 11100 00
Q ss_pred chhhh-ccCccccccCCCCEEEEeCCccccHHHHHHHH-----------hcCCceEEEEcCCC--CCCC---C--CCCee
Q 041113 145 HLDHA-LLSESVKDWIQFDVIIQIGSRITSKRISQMIE-----------ECFPCTYILVDNHP--CRHD---P--SHSVT 205 (983)
Q Consensus 145 ~~g~~-~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~-----------~~~~~~~i~id~d~--~~~~---~--~~~~~ 205 (983)
-|+.. -....+..+.+.|++|+||..-.-.....-.+ -++.+++|.+..+- ..-+ + +...+
T Consensus 104 PYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt 183 (207)
T 1djl_A 104 PYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNT 183 (207)
T ss_dssp CGGGEEEHHHHGGGGGGCSEEEEESCCGGGCTHHHHCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGGSTTE
T ss_pred CHHHHhhHHHHhhhhhhcCEEEEeccccccCCccccCCCCCccCCeeecceecCEEEEEECCCCCCcCCCcCcceecCCc
Confidence 00100 01123445779999999998743322221100 11123455554322 1111 1 23345
Q ss_pred EEEEcCHHHHHHHHHhcc
Q 041113 206 HRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 206 ~~i~~d~~~~l~~L~~~~ 223 (983)
.-+.||++..+++|...+
T Consensus 184 ~MlfGDAK~~~~~l~~~l 201 (207)
T 1djl_A 184 AMLLGDAKKTCDALQAKV 201 (207)
T ss_dssp EEEESCHHHHHHHHHHHH
T ss_pred eEEeccHHHHHHHHHHHH
Confidence 667999999999998765
|
| >1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* | Back alignment and structure |
|---|
Probab=80.74 E-value=0.87 Score=47.21 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=45.8
Q ss_pred ccCCCCEEEEeCCccccHHHHHHH--HhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhc
Q 041113 157 DWIQFDVIIQIGSRITSKRISQMI--EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKV 222 (983)
Q Consensus 157 ~~~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~ 222 (983)
.+++||++|++|+++.-....... ......++|.|+.++...+. ..++.|.+++.+++..|.+.
T Consensus 174 ~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~ 239 (249)
T 1m2k_A 174 EVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTP--IADYSLRGKAGEVMDELVRH 239 (249)
T ss_dssp HHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHH
T ss_pred HHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCc--ceeEEEeCCHHHHHHHHHHH
Confidence 456899999999987654433221 22234568889998876643 35788999999999998754
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=80.45 E-value=3.2 Score=48.70 Aligned_cols=107 Identities=10% Similarity=0.048 Sum_probs=76.8
Q ss_pred hHHHHHhhhhccCceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+.+++++.+|++-=| |..-.+..+.+|.. .++|+++|.-+-....+-. .-+..+
T Consensus 59 Aa~~A~GyAr~tg~pgv~~~TsGpG~~N~~~~i~~A~~--~~vPll~itg~~~~~~~~~---------------~~~~~Q 121 (568)
T 2c31_A 59 AGYAASIAGYIEGKPGVCLTVSAPGFLNGVTSLAHATT--NCFPMILLSGSSEREIVDL---------------QQGDYE 121 (568)
T ss_dssp HHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHHHHHHH--HTCCEEEEEEECCHHHHHT---------------TCCCTT
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHh--cCCCEEEEccCCCccccCC---------------CCCccc
Confidence 56678888777788877776444 34556788999887 7999999988754321110 001124
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
..|...+.+.+-....++++++++...+++|+. .+||+.|++..|
T Consensus 122 ~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (568)
T 2c31_A 122 EMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAK 171 (568)
T ss_dssp CCCHHHHSGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred ccCHHHHHHhhhheeeecCCHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence 468888888888888999998888777777653 468999999987
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=80.41 E-value=3.9 Score=48.21 Aligned_cols=105 Identities=10% Similarity=0.022 Sum_probs=71.5
Q ss_pred hHHHHHhhhhccCceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+.+++++++|++-=| |..-.+..+.+|.. .++|+++|.-+-....+-+. . ..+
T Consensus 55 Aa~~A~GyAr~tg~p~v~~~TsGpG~~N~~~gv~~A~~--~~vPll~itg~~~~~~~~~~-------------~---~~Q 116 (589)
T 2pgn_A 55 GAWMVNGYNYVKDRSAAVGAWHCVGNLLLHAAMQEART--GRIPAVHIGLNSDGRLAGRS-------------E---AAQ 116 (589)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEEGGGGGGCHHHHHHHHH--TTCCEEEEEEESCGGGTTCT-------------T---CSS
T ss_pred HHHHHHHHHHHHCCCEEEEEecCchHHHHHHHHHHHHh--cCCCEEEEecCCcccccCCC-------------C---ccc
Confidence 56788888777777766655333 34556899999987 89999999877654322100 0 123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
..|... .+.+-....++++++++...+++|+. .+||+.|++..|
T Consensus 117 ~~d~~~-~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 117 QVPWQS-FTPIARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp CCCGGG-GTTTSSEEEECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred ccChhh-ccccEEEEeecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 345555 55555678889998888777777653 358999999876
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=80.23 E-value=3.1 Score=44.57 Aligned_cols=124 Identities=11% Similarity=0.209 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHhhh-cCCCEEEEeccCC----------CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHh
Q 041113 654 KSPVEVASIATTLVE-EGFTAIKLKVARR----------ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~-~G~~~~KiKig~~----------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~ 722 (983)
.+++++.+.++.+.+ .||..+.+.++.+ .+++.-.+.++++|+.++-.+.+.+=. .|+ +..++++
T Consensus 108 ~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~--~~~--~~~~~a~ 183 (311)
T 1ep3_A 108 SEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSP--NVT--DIVPIAK 183 (311)
T ss_dssp SSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECS--CSS--CSHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEEEECC--ChH--HHHHHHH
Confidence 467888888877777 8999999987632 023334778999999874333333322 232 2234445
Q ss_pred hcccCCCceeec---------------C--------CCC-------hHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHh
Q 041113 723 LIKDCDLQYIEE---------------P--------VQN-------EEDIIKYCEESGLPVALDETIDKFQKDPLNMLEK 772 (983)
Q Consensus 723 ~l~~~~i~~iEe---------------P--------~~~-------~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~ 772 (983)
.+++.++.+|-= | +.. .+.++++++.+.+||.+.=-+.+..+ ...
T Consensus 184 ~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvia~GGI~~~~d-----~~~ 258 (311)
T 1ep3_A 184 AVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQD-----VLE 258 (311)
T ss_dssp HHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCSHHH-----HHH
T ss_pred HHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEEEECCcCCHHH-----HHH
Confidence 555555554431 1 000 24456777778899988877776543 444
Q ss_pred hcCCCceEEEEcCC
Q 041113 773 YAHPGIVAIVIKPS 786 (983)
Q Consensus 773 ~~~~~~~~i~~k~~ 786 (983)
+++.|+|.+++--.
T Consensus 259 ~l~~GAd~V~vg~~ 272 (311)
T 1ep3_A 259 MYMAGASAVAVGTA 272 (311)
T ss_dssp HHHHTCSEEEECTH
T ss_pred HHHcCCCEEEECHH
Confidence 45567888876443
|
| >3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A* | Back alignment and structure |
|---|
Probab=80.22 E-value=0.86 Score=49.14 Aligned_cols=65 Identities=15% Similarity=0.248 Sum_probs=47.0
Q ss_pred ccCCCCEEEEeCCccccHHHHHHH--HhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 157 DWIQFDVIIQIGSRITSKRISQMI--EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 157 ~~~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
.+.+||++|++|+++.-+...++. ......+++.|+.++...+ ...++.|.+++.+++..|.+.+
T Consensus 203 ~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~~pT~~d--~~adl~i~g~a~evl~~L~~~L 269 (355)
T 3pki_A 203 ASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHD--RHADLRIHGYVDEVMTRLMEHL 269 (355)
T ss_dssp HHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECSSCCTTG--GGCSEEECSCHHHHHHHHHHHT
T ss_pred HHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECCCCCCCC--CccCEEEeCCHHHHHHHHHHHh
Confidence 457899999999998654433321 1223346788998886554 3567889999999999998765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 983 | ||||
| d1r6wa1 | 221 | c.1.11.2 (A:100-320) O-succinylbenzoate synthase { | 2e-23 | |
| d1jdfa1 | 309 | c.1.11.2 (A:138-446) D-glucarate dehydratase {Esch | 3e-16 | |
| d1jpdx1 | 208 | c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Esch | 9e-15 | |
| d1yeya1 | 252 | c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas | 5e-14 | |
| d1muca1 | 242 | c.1.11.2 (A:131-372) Muconate-lactonizing enzyme { | 1e-12 | |
| d1tzza1 | 247 | c.1.11.2 (A:1146-1392) Hypothetical protein Bll673 | 4e-11 | |
| d1jpma1 | 234 | c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Baci | 7e-11 | |
| d2chra1 | 244 | c.1.11.2 (A:127-370) Chlormuconate cycloisomerase | 1e-10 | |
| d1nu5a1 | 243 | c.1.11.2 (A:127-369) Chlormuconate cycloisomerase | 2e-10 | |
| d1sjda1 | 242 | c.1.11.2 (A:126-367) N-acylamino acid racemase {Am | 3e-09 | |
| d1kcza1 | 253 | c.1.11.2 (A:161-413) beta-Methylaspartase {Clostri | 3e-09 | |
| d1kkoa1 | 251 | c.1.11.2 (A:161-411) beta-Methylaspartase {Citroba | 6e-09 | |
| d1r0ma1 | 243 | c.1.11.2 (A:133-375) N-acylamino acid racemase {De | 7e-09 | |
| d1wufa1 | 244 | c.1.11.2 (A:1127-1370) N-acylamino acid racemase { | 1e-08 | |
| d1wuea1 | 241 | c.1.11.2 (A:1127-1367) N-acylamino acid racemase { | 2e-08 | |
| d1r6wa2 | 101 | d.54.1.1 (A:-2-99) O-succinylbenzoate synthase {Es | 5e-08 | |
| d2mnra1 | 227 | c.1.11.2 (A:133-359) Mandelate racemase {Pseudomon | 8e-08 | |
| d2gdqa1 | 256 | c.1.11.2 (A:119-374) Hypothetical protein YitF {Ba | 4e-07 | |
| d1m33a_ | 256 | c.69.1.26 (A:) Biotin biosynthesis protein BioH {E | 1e-06 | |
| d1rvka1 | 255 | c.1.11.2 (A:127-381) Hypothetical protein Atu3453 | 2e-06 | |
| d1mj5a_ | 298 | c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomona | 5e-06 | |
| d1pjaa_ | 268 | c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {H | 4e-05 | |
| d1xkla_ | 258 | c.69.1.20 (A:) Salicylic acid-binding protein 2 (S | 6e-05 | |
| d3c70a1 | 256 | c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber t | 3e-04 | |
| d2gl5a1 | 278 | c.1.11.2 (A:123-400) Putative dehydratase protein | 4e-04 | |
| d1bn7a_ | 291 | c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus | 0.001 | |
| d1brta_ | 277 | c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces au | 0.001 | |
| d1cvla_ | 319 | c.69.1.18 (A:) Lipase {Chromobacterium viscosum [T | 0.001 | |
| d1ex9a_ | 285 | c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [Tax | 0.003 | |
| d1wm1a_ | 313 | c.69.1.7 (A:) Proline aminopeptidase {Serratia mar | 0.004 | |
| d1uk8a_ | 271 | c.69.1.10 (A:) Meta-cleavage product hydrolase Cum | 0.004 | |
| d1ehya_ | 293 | c.69.1.11 (A:) Bacterial epoxide hydrolase {Agroba | 0.004 |
| >d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Score = 97.9 bits (243), Expect = 2e-23
Identities = 40/212 (18%), Positives = 77/212 (36%), Gaps = 22/212 (10%)
Query: 656 PVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQ 715
P ++ + G K++V + ++D V+ + + + + LR+DANR WT
Sbjct: 15 PDDLILKLADM--PGEKVAKVRVGLY-EAVRDGMVVNLLLEAIPD-LHLRLDANRAWTPL 70
Query: 716 EALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH 775
+ +F + I + + + + ++ A
Sbjct: 71 KGQQFAKYVNPDYRDRIAFLEEPCKTRDDSRAFARETGIAIAWDESLREPDFAF---VAE 127
Query: 776 PGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNA 835
G+ A+VIKP++ G E + A G AV+S++ ES LGL+ +++L
Sbjct: 128 EGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIESSLGLTQLARIAAWLT---- 183
Query: 836 YLCKVMNRELCPPVAQGLGTYQWLKEDVTTDP 867
P GL T ++
Sbjct: 184 -----------PDTIPGLDTLDLMQAQQVRRW 204
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Score = 78.3 bits (192), Expect = 3e-16
Identities = 38/223 (17%), Positives = 79/223 (35%), Gaps = 28/223 (12%)
Query: 655 SPVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWT 713
+P V +A E+ GF KLK ++AE I + ++ + +D N W+
Sbjct: 47 TPDAVVRLAEAAYEKYGFNDFKLKGGVL-AGEEEAESIVALAQRFPQ-ARITLDPNGAWS 104
Query: 714 YQEALEFGFLIKDCDLQYIEEPVQNE------EDIIKYCEESGLPVALDETIDKFQKDPL 767
EA++ G + L Y E+P E E + ++ +GLP A + +++
Sbjct: 105 LNEAIKIGKYL-KGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGH 163
Query: 768 NMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFS 827
+ + I + + + +A+ G + + L+
Sbjct: 164 TLSLQSVD-----IPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSDNHFDISLAM----- 213
Query: 828 SYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISI 870
+ + A K+ + +Q + +T +P I
Sbjct: 214 -FTHVAAAAPGKITAIDTHWI-------WQEGNQRLTKEPFEI 248
|
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Score = 71.8 bits (175), Expect = 9e-15
Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 11/177 (6%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714
+P ++A+ A+TL + G +K+K+ D +E + +R V L VDAN +W
Sbjct: 16 TPDQMANSASTLWQAGAKLLKVKL----DNHLISERMVAIRTAV-PDATLIVDANESWRA 70
Query: 715 QEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA 774
+ L+ D + +E+P+ ++D LP+ DE+ K
Sbjct: 71 EGLAARCQLLADLGVAMLEQPLPAQDDAALENFIHPLPICADESCHTRSNL------KAL 124
Query: 775 HPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLE 831
+ IK GG A +A A+ G ++ + +SA + +
Sbjct: 125 KGRYEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISAALPLVPQVS 181
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Score = 70.7 bits (172), Expect = 5e-14
Identities = 38/193 (19%), Positives = 75/193 (38%), Gaps = 9/193 (4%)
Query: 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNW 712
S ++ +A V +GF IKLKV A+ D + R +G I + VDAN+ W
Sbjct: 13 GYSDEKLVRLAKEAVADGFRTIKLKVG--ANVQDDIRRCRLARAAIGPDIAMAVDANQRW 70
Query: 713 TYQEALEFGFLIKDCDLQYIEEPVQNEEDI---IKYCEESGLPVALDETIDKFQKDPLNM 769
A+++ + + D+ +IEEP ++ + + +PV+ E + +
Sbjct: 71 DVGPAIDWMRQLAEFDIAWIEEPTSPDDVLGHAAIRQGITPVPVSTGEHTQ----NRVVF 126
Query: 770 LEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSY 829
+ + I I + +GG I A + G A L ++ + +
Sbjct: 127 KQLLQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFPHAGGVGLCELVQHLAMADF 186
Query: 830 LELQNAYLCKVMN 842
+ + + +
Sbjct: 187 VAITGKMEDRAIE 199
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Score = 66.1 bits (160), Expect = 1e-12
Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 17/228 (7%)
Query: 643 SIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRI 702
S+++ + S + ++A L KLK+ +D + + +++++G
Sbjct: 5 SLEVAWTLASGDTARDIAEARHMLEIRRHRVFKLKIGAN-PVEQDLKHVVTIKRELGDSA 63
Query: 703 ELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKF 762
+RVD N+ W +A+ ++ D + IE+P+ + P + D+
Sbjct: 64 SVRVDVNQYWDESQAIRACQVLGDNGIDLIEQPISRINRGGQVRLNQRTPAPI--MADES 121
Query: 763 QKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
+ + A +K + GG A+ A+ G E +G A
Sbjct: 122 IESVEDAFSLAADGAASIFALKIAKNGGPRAVLRTAQIAEAAGIGLYGGTMLEGSIGTLA 181
Query: 823 YIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISI 870
L L L E++ +P
Sbjct: 182 SAHAFLTLR--------------QLTWGTELFGPLLLTEEIVNEPPQY 215
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Score = 62.3 bits (150), Expect = 4e-11
Identities = 36/216 (16%), Positives = 73/216 (33%), Gaps = 14/216 (6%)
Query: 652 SNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRN 711
K + ++ G+ +K+K+ A +D I+ V +++G +L VDAN
Sbjct: 17 PGKGLSMLRGEMRGYLDRGYNVVKMKIG-GAPIEEDRMRIEAVLEEIGKDAQLAVDANGR 75
Query: 712 WTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQK-DPLNML 770
+ + + + +++D L + EE + ++ P + + F D N+L
Sbjct: 76 FNLETGIAYAKMLRDYPLFWYEEVGDPLDYALQAALAEFYPGPMATGENLFSHQDARNLL 135
Query: 771 EKYAHPGIVAIVIKPSV-IGGFENAGLIARWAQRHGK---------MAVVSAAFESGLGL 820
+ G + HG +S +GLGL
Sbjct: 136 RYGGMRPDRDWLQFDCALSYGLCEYQRTLEVLKTHGWSPSRCIPHGGHQMSLNIAAGLGL 195
Query: 821 SAYIIFSSYLELQNAYL--CKVMNRELCPPVAQGLG 854
+ + + +V N + P G+G
Sbjct: 196 GGNESYPDLFQPYGGFPDGVRVENGHITMPDLPGIG 231
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Score = 61.2 bits (147), Expect = 7e-11
Identities = 53/216 (24%), Positives = 85/216 (39%), Gaps = 16/216 (7%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714
SP E+A+ A +++GF +K+KV + D D IQE+RK+VG ++LR+DAN+ W
Sbjct: 15 SPEEMAADAENYLKQGFQTLKIKVGKD-DIATDIARIQEIRKRVGSAVKLRLDANQGWRP 73
Query: 715 QEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA 774
+EA+ ++D L +D + ++ D+ P E
Sbjct: 74 KEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQ 133
Query: 775 HPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQN 834
I IK GG A I A+ G +V + E+ LG++A F++
Sbjct: 134 TRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKR--- 190
Query: 835 AYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISI 870
LK DV I+
Sbjct: 191 ------------NITRFDFDAPLMLKTDVFNGGITY 214
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Score = 60.8 bits (146), Expect = 1e-10
Identities = 42/229 (18%), Positives = 81/229 (35%), Gaps = 17/229 (7%)
Query: 642 TSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHR 701
++I I + S + ++ S + K+K+ R P D ++ + +G +
Sbjct: 4 SAIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFR-SPQDDLIHMEALSNSLGSK 62
Query: 702 IELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDK 761
LRVD N+ W Q A + ++ ++ IE+PV E VA+ D+
Sbjct: 63 AYLRVDVNQAWDEQVASVYIPELEALGVELIEQPVGRENTQALRRLSDNNRVAI--MADE 120
Query: 762 FQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLS 821
+ + + +K +GG IA A+ G + +S +G S
Sbjct: 121 SLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTS 180
Query: 822 AYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISI 870
+ S + P L L + ++ +P+ I
Sbjct: 181 VALQLYSTVP--------------SLPFGCELIGPFVLADTLSHEPLEI 215
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Score = 60.5 bits (145), Expect = 2e-10
Identities = 47/229 (20%), Positives = 83/229 (36%), Gaps = 17/229 (7%)
Query: 642 TSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHR 701
TSI I + S + ++ S + K+K+ R P +D E I+ + K VG R
Sbjct: 4 TSIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGAR-TPAQDLEHIRSIVKAVGDR 62
Query: 702 IELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDK 761
+RVD N+ W Q A + +++ ++ +E+PV V D+
Sbjct: 63 ASVRVDVNQGWDEQTASIWIPRLEEAGVELVEQPVPRANFGALRRLTEQNGV--AILADE 120
Query: 762 FQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLS 821
+ E + A +K +GG N +A A+ G + +S +G +
Sbjct: 121 SLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTVGTA 180
Query: 822 AYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISI 870
A + + L P L L + +T + I
Sbjct: 181 AALHVYATLP--------------SLPYGCELIGPWVLGDRLTQQDLEI 215
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Score = 56.6 bits (135), Expect = 3e-09
Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 7/191 (3%)
Query: 642 TSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHR 701
S+ + + ++ + ++EG+ IKLK+ +P D E ++ VR++ G
Sbjct: 3 DSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKI----EPGWDVEPVRAVRERFGDD 58
Query: 702 IELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDK 761
+ L+VDAN +T +A + L L + EE+ + E + +D+
Sbjct: 59 VLLQVDANTAYTLGDAPQLARLDPFGLLLIEQ---PLEEEDVLGHAELARRIQTPICLDE 115
Query: 762 FQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLS 821
+ + + IKP +GG+ A + HG E+GLG +
Sbjct: 116 SIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGGMIETGLGRA 175
Query: 822 AYIIFSSYLEL 832
A + +S
Sbjct: 176 ANVALASLPNF 186
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Score = 56.5 bits (136), Expect = 3e-09
Identities = 26/187 (13%), Positives = 57/187 (30%), Gaps = 32/187 (17%)
Query: 663 ATTLVEEGFTAIKLKVARRADPIKDA-----EVIQEVRKKVGHRIELRVD------ANRN 711
A L ++ K+ + + + + + I ++R + + +D A +
Sbjct: 29 ADVLPHALINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDVYGTIGAAFD 88
Query: 712 WTYQEALEFGFLIKDCDLQY---IEEPVQNEEDIIKYCEE------------SGLPVALD 756
+ ++ + + + IE P+ ED K E + D
Sbjct: 89 VDIKAMADYIQTLAEAAKPFHLRIEGPMD-VEDRQKQMEAMRDLRAELDGRGVDAELVAD 147
Query: 757 ETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSA-AFE 815
E + +D + A + IK +GG N + + +G A E
Sbjct: 148 EWCNT-VEDVKFFTDNKA---GHMVQIKTPDLGGVNNIADAIMYCKANGMGAYCGGTCNE 203
Query: 816 SGLGLSA 822
+
Sbjct: 204 TNRSAEV 210
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Score = 55.3 bits (133), Expect = 6e-09
Identities = 29/186 (15%), Positives = 62/186 (33%), Gaps = 30/186 (16%)
Query: 663 ATTLVEEGFTAIKLKVARRADPIKDA-----EVIQEVRKKVGHRIELRVD------ANRN 711
L ++ K+ + + +++ + I +R + L +D +
Sbjct: 29 VDVLPHALINNVEEKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFD 88
Query: 712 WTYQEALEF-GFLIKDCDLQ--YIEEPV---QNEEDI--IKYCEE------SGLPVALDE 757
E+ L K+ YIE PV + I + + SG+ + DE
Sbjct: 89 MDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADE 148
Query: 758 TIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSA-AFES 816
+ + +D ++ + + + IK +GG N + +HG A E+
Sbjct: 149 WCNTY-QDIVDFTDAGS---CHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNET 204
Query: 817 GLGLSA 822
+
Sbjct: 205 EISART 210
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Score = 55.4 bits (132), Expect = 7e-09
Identities = 38/230 (16%), Positives = 74/230 (32%), Gaps = 24/230 (10%)
Query: 642 TSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHR 701
+++ + + VE+G+ IKLK+ P D + ++ R+
Sbjct: 3 EQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKI----KPGWDVQPVRATREAF-PD 57
Query: 702 IELRVDANRNWTYQEALEFGFLIKDC-DLQYIEEPVQNEEDIIKYCEESGLPVALDETID 760
I L VDAN +T +A L + + D + P+ +D
Sbjct: 58 IRLTVDANSAYTLADAGRLRQLDEYDLTYIEQPLAWDDLVDHAELARRIRTPL----CLD 113
Query: 761 KFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGL 820
+ + + A I +K + +GG + + AQ G ESG+G
Sbjct: 114 ESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCGGMLESGIGR 173
Query: 821 SAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISI 870
+ I S+ ++ + D+ +P+
Sbjct: 174 AHNIHLSTLSN--------------FRLPGDTSSASRYWERDLIQEPLEA 209
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Score = 54.6 bits (130), Expect = 1e-08
Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 22/228 (9%)
Query: 643 SIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRI 702
SIK+ I ++ + + V++G+ +KLK+A KD + ++ VRK +
Sbjct: 4 SIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAPN----KDIQFVEAVRKSFPK-L 58
Query: 703 ELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKF 762
L DAN + ++ L + DL+ IE+P ++ + + L +D+
Sbjct: 59 SLMADANSAYNREDFLLLKE-LDQYDLEMIEQPFGTKDFVDHAWLQKQLKT--RICLDEN 115
Query: 763 QKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
+ ++ + ++ AI +K + +GG +A IA + + + E+G+G +
Sbjct: 116 IRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVWCGGMLEAGVGRAH 175
Query: 823 YIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISI 870
I ++ E + ++ ED+ T +
Sbjct: 176 NIALAARNEF--------------VFPGDISASNRFFAEDIVTPAFEL 209
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Score = 53.9 bits (128), Expect = 2e-08
Identities = 44/229 (19%), Positives = 88/229 (38%), Gaps = 22/229 (9%)
Query: 642 TSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHR 701
I + + + ++ VE+G+ +KLK+ P D E + +R+ +
Sbjct: 3 RKIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKI----RPGYDVEPVALIRQHFPN- 57
Query: 702 IELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDK 761
+ L VDAN +T + + + L IE+P ++ + + L + +D+
Sbjct: 58 LPLMVDANSAYTLADLPQLQR-LDHYQLAMIEQPFAADDFLDHAQLQRELKTRIC--LDE 114
Query: 762 FQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLS 821
+ + A +I +K +GG A IA + Q + + + FESG+G +
Sbjct: 115 NIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLVWLGGMFESGVGRA 174
Query: 822 AYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISI 870
+ F+S T ++ ED+ T+P +
Sbjct: 175 LNLQFASQPT--------------FSFPGDISATERYFYEDIITEPFIL 209
|
| >d1r6wa2 d.54.1.1 (A:-2-99) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} Length = 101 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Score = 49.5 bits (118), Expect = 5e-08
Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 26/114 (22%)
Query: 501 SLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEE 559
+YR Q+ P + + +R R+G + L E G+GE++PL +E +A+
Sbjct: 7 QVYRWQI--PMDAGVVLRDRRLKTRDGLYVCLR-EGEREGWGEISPLPGFSQETWEEAQS 63
Query: 560 QLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILN 613
L ++ G PSV G+ A+
Sbjct: 64 VLLAWVN----------------------NWLAGDCELPQMPSVAFGVSCALAE 95
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Score = 52.0 bits (123), Expect = 8e-08
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714
A T E GF A+K K+ +D V++ +R+ VG + VD N++
Sbjct: 12 GVKLATERAVTAAELGFRAVKTKIGYP-ALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDV 70
Query: 715 QEALEFGFLIKDCDLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEK 772
A++ ++ + +IEEP + E + + +PV + E ++ +
Sbjct: 71 PAAIKRSQALQQEGVTWIEEPTLQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIG 130
Query: 773 YAH 775
Sbjct: 131 ACR 133
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Score = 50.0 bits (118), Expect = 4e-07
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANR 710
DS + S +++GF IK+K+ +D I ++ G I + +DAN+
Sbjct: 17 DSPQWISRSVSNVEAQLKKGFEQIKVKIGGT-SFKEDVRHINALQHTAGSSITMILDANQ 75
Query: 711 NWTYQEALEFG-FLIKDCDLQYIEEPVQNE 739
++ A ++ + + ++ ++EEP+ +
Sbjct: 76 SYDAAAAFKWERYFSEWTNIGWLEEPLPFD 105
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Score = 48.7 bits (114), Expect = 1e-06
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQNH 983
L+ LHG+ E W I + +S +DLPG G S+
Sbjct: 14 LVLLHGWGLNAEVWRCIDEELSSHFTLHLVDLPGFGRSRGFGA 56
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 48.2 bits (113), Expect = 2e-06
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVAR-----RADPIKDAEVIQEVRKKVGHRIELRVDAN 709
+P + A TLV+ G+ IKL D D + VR+ VG I L +DA
Sbjct: 23 TPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDAF 82
Query: 710 RNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYC 746
++ +AL G ++ +IEEP+ +
Sbjct: 83 HWYSRTDALALGRGLEKLGFDWIEEPMDEQSLSSYKW 119
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Score = 47.2 bits (110), Expect = 5e-06
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGG 977
+LF HG + W IM +G R I+ DL G G
Sbjct: 31 ILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGD 67
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 4e-05
Identities = 5/41 (12%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA---RCISIDLPGHGGS 978
++ +HG + + +++ ++ + +DL S
Sbjct: 5 VIVVHGLFDSSYSFRHLLEYINETHPGTVVTVLDLFDGRES 45
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 43.4 bits (100), Expect = 6e-05
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
+ +HG G W + + + + ++DL G
Sbjct: 5 FVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASGTD 43
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Score = 41.4 bits (95), Expect = 3e-04
Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 942 LFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
+ +H W + + + ++DL G
Sbjct: 6 VLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVD 43
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Score = 40.9 bits (94), Expect = 4e-04
Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 24/129 (18%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVAR----------------------RADPIKDAEVIQ 692
+P E A A +++G+ AIK+ I
Sbjct: 26 TPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIA 85
Query: 693 EVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNEEDIIKYCEESG 750
+R+ +G ++ V+ + A++F I+ + EEP+ N +++ K +
Sbjct: 86 AMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRIFLYEEPIHPLNSDNMQKVSRSTT 145
Query: 751 LPVALDETI 759
+P+A E
Sbjct: 146 IPIATGERS 154
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Score = 39.8 bits (91), Expect = 0.001
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQNH 983
+LFLHG + W I+ V+ S RCI+ DL G G S +
Sbjct: 32 VLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDL 74
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Score = 39.5 bits (90), Expect = 0.001
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGSKMQNH 983
++ +HGF +G W A+ + R I+ D G G S
Sbjct: 26 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTT 69
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} Length = 319 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Score = 39.4 bits (91), Expect = 0.001
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 7/45 (15%)
Query: 941 LLFLHGFLGTG------EEWIPIMKAVSGS-ARCISIDLPGHGGS 978
++ +HG GT + W I + A+ +L G
Sbjct: 11 VILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSD 55
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.6 bits (89), Expect = 0.003
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 941 LLFLHGFLGTGE-----EWIPIMKAVSGS-ARCISIDLPGHGGS 978
++ HG LG W I A+ A+ ++ S
Sbjct: 10 IVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQLDTS 53
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Score = 38.0 bits (86), Expect = 0.004
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQNH 983
+F+HG G G + + D G G S+
Sbjct: 37 AVFIHGGPGGGISPHHRQLFDPERYKVLLFDQRGCGRSRPHAS 79
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Score = 37.9 bits (86), Expect = 0.004
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 16/70 (22%)
Query: 929 EIGQRIDIQDNI------------LLFLHGF---LGTGEEWIPIMKAVSGSARCISIDLP 973
EIG+ I + ++ +HG + W + A+S R I+ D+
Sbjct: 3 EIGKSILA-AGVLTNYHDVGEGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMV 61
Query: 974 GHGGSKMQNH 983
G G + +
Sbjct: 62 GFGFTDRPEN 71
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Score = 38.0 bits (86), Expect = 0.004
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQNH 983
LL LHG+ G EW ++ ++ I DL G G S+ +
Sbjct: 31 LLLLHGWPGFWWEWSKVIGPLAEHYDVIVPDLRGFGDSEKPDL 73
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 983 | |||
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 100.0 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 100.0 | |
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 100.0 | |
| d1sjda1 | 242 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 100.0 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 100.0 | |
| d2gl5a1 | 278 | Putative dehydratase protein STM2273 {Salmonella t | 100.0 | |
| d2gdqa1 | 256 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 100.0 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 100.0 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 100.0 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 100.0 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 100.0 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 100.0 | |
| d1yeya1 | 252 | RTS beta protein {Xanthomonas campestris pv. campe | 100.0 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 100.0 | |
| d1jdfa1 | 309 | D-glucarate dehydratase {Escherichia coli [TaxId: | 100.0 | |
| d1ybha3 | 208 | Acetohydroxyacid synthase catalytic subunit {Thale | 100.0 | |
| d2ez9a3 | 228 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 100.0 | |
| d1r6wa1 | 221 | O-succinylbenzoate synthase {Escherichia coli [Tax | 100.0 | |
| d1t9ba3 | 227 | Acetohydroxyacid synthase catalytic subunit {Baker | 99.98 | |
| d1ozha3 | 192 | Catabolic acetolactate synthase {Klebsiella pneumo | 99.98 | |
| d2djia3 | 229 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 99.98 | |
| d2ihta3 | 198 | Carboxyethylarginine synthase {Streptomyces clavul | 99.98 | |
| d1zpda3 | 204 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 99.97 | |
| d1ovma3 | 196 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 99.97 | |
| d1jpdx1 | 208 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 99.97 | |
| d1q6za3 | 183 | Benzoylformate decarboxylase {Pseudomonas putida [ | 99.97 | |
| d1pvda3 | 196 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 99.97 | |
| d2ji7a3 | 183 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 99.97 | |
| d1kcza1 | 253 | beta-Methylaspartase {Clostridium tetanomorphum [T | 99.92 | |
| d1kkoa1 | 251 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 99.91 | |
| d1ybha1 | 179 | Acetohydroxyacid synthase catalytic subunit {Thale | 99.91 | |
| d2djia1 | 177 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 99.9 | |
| d2ez9a1 | 183 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 99.9 | |
| d1ozha1 | 179 | Catabolic acetolactate synthase {Klebsiella pneumo | 99.89 | |
| d2ihta1 | 177 | Carboxyethylarginine synthase {Streptomyces clavul | 99.89 | |
| d2ji7a1 | 175 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 99.88 | |
| d1t9ba1 | 171 | Acetohydroxyacid synthase catalytic subunit {Baker | 99.88 | |
| d1jpma2 | 125 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 99.87 | |
| d2chra2 | 126 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 99.84 | |
| d1nu5a2 | 126 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 99.84 | |
| d1rvka2 | 126 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 99.83 | |
| d2gdqa2 | 115 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 99.83 | |
| d1wufa2 | 126 | N-acylamino acid racemase {Listeria innocua [TaxId | 99.82 | |
| d1pvda1 | 179 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 99.82 | |
| d2mnra2 | 130 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 99.81 | |
| d2gl5a2 | 122 | Putative dehydratase protein STM2273 {Salmonella t | 99.81 | |
| d1zpda1 | 175 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 99.8 | |
| d1muca2 | 127 | Muconate-lactonizing enzyme (cis muconate cycloiso | 99.8 | |
| d1ovma1 | 161 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 99.79 | |
| d1wuea2 | 126 | N-acylamino acid racemase {Enterococcus faecalis [ | 99.79 | |
| d1r0ma2 | 127 | N-acylamino acid racemase {Deinococcus radiodurans | 99.77 | |
| d1jdfa2 | 133 | D-glucarate dehydratase {Escherichia coli [TaxId: | 99.77 | |
| d1q6za1 | 160 | Benzoylformate decarboxylase {Pseudomonas putida [ | 99.76 | |
| d1jpdx2 | 116 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 99.76 | |
| d1sjda2 | 125 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 99.74 | |
| d1tzza2 | 140 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 99.73 | |
| d1bqga2 | 132 | D-glucarate dehydratase {Pseudomonas putida [TaxId | 99.72 | |
| d1yeya2 | 139 | RTS beta protein {Xanthomonas campestris pv. campe | 99.64 | |
| d1ytla1 | 158 | Acetyl-CoA decarbonylase/synthase complex epsilon | 99.59 | |
| d1r6wa2 | 101 | O-succinylbenzoate synthase {Escherichia coli [Tax | 99.54 | |
| d1umda_ | 362 | Branched-chain alpha-keto acid dehydrogenase, PP m | 98.91 | |
| d1w85a_ | 365 | Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st | 98.85 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 98.82 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 98.82 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 98.78 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 98.77 | |
| d2bfda1 | 395 | Branched-chain alpha-keto acid dehydrogenase, PP m | 98.75 | |
| d1qs0a_ | 407 | 2-oxoisovalerate dehydrogenase (E1B), PP module {P | 98.73 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 98.71 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 98.66 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 98.63 | |
| d2ozla1 | 361 | E1-beta subunit of pyruvate dehydrogenase (PP modu | 98.63 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 98.63 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 98.62 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 98.61 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 98.59 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 98.59 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 98.59 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 98.58 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 98.58 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 98.58 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 98.57 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 98.57 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 98.55 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 98.51 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 98.5 | |
| d2c42a2 | 447 | Pyruvate-ferredoxin oxidoreductase, PFOR, domains | 98.48 | |
| d2akza1 | 294 | Enolase {Human (Homo sapiens), gamma isoform [TaxI | 98.44 | |
| d2fyma1 | 292 | Enolase {Escherichia coli [TaxId: 562]} | 98.4 | |
| d2al1a1 | 295 | Enolase {Baker's yeast (Saccharomyces cerevisiae) | 98.37 | |
| d1w6ta1 | 296 | Enolase {Streptococcus pneumoniae [TaxId: 1313]} | 98.35 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 98.35 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 98.34 | |
| d2ptza1 | 291 | Enolase {Trypanosoma brucei [TaxId: 5691]} | 98.31 | |
| d2r8oa2 | 331 | Transketolase (TK), PP module {Escherichia coli [T | 98.24 | |
| d1w6ta2 | 137 | Enolase {Streptococcus pneumoniae [TaxId: 1313]} | 98.14 | |
| d1r9ja2 | 336 | Transketolase (TK), PP module {Leishmania mexicana | 98.13 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 98.04 | |
| d1itza1 | 338 | Transketolase (TK), PP module {Maize (Zea mays) [T | 98.04 | |
| d1gpua1 | 335 | Transketolase (TK), PP module {Baker's yeast (Sacc | 98.01 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 97.95 | |
| d2fyma2 | 139 | Enolase {Escherichia coli [TaxId: 562]} | 97.87 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 97.74 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 97.7 | |
| d2ptza2 | 139 | Enolase {Trypanosoma brucei [TaxId: 5691]} | 97.59 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 97.59 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 97.58 | |
| d2al1a2 | 141 | Enolase {Baker's yeast (Saccharomyces cerevisiae) | 97.3 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 97.15 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 96.98 | |
| d2akza2 | 139 | Enolase {Human (Homo sapiens), gamma isoform [TaxI | 96.76 | |
| d1pdza2 | 139 | Enolase {European lobster (Homarus vulgaris) [TaxI | 96.72 | |
| d1kkoa2 | 160 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 96.7 | |
| d1kcza2 | 160 | beta-Methylaspartase {Clostridium tetanomorphum [T | 96.68 | |
| d2ieaa2 | 415 | Pyruvate dehydrogenase E1 component, PP module {Es | 96.6 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 96.59 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 96.39 | |
| d1zpda2 | 186 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 96.32 | |
| d2ihta2 | 186 | Carboxyethylarginine synthase {Streptomyces clavul | 96.32 | |
| d1ozha2 | 181 | Catabolic acetolactate synthase {Klebsiella pneumo | 96.11 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 96.0 | |
| d1pvda2 | 180 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 95.9 | |
| d2djia2 | 184 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 95.88 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 95.83 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 95.45 | |
| d1t9ba2 | 175 | Acetohydroxyacid synthase catalytic subunit {Baker | 95.42 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 95.37 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 95.34 | |
| d1ybha2 | 195 | Acetohydroxyacid synthase catalytic subunit {Thale | 95.22 | |
| d2ez9a2 | 174 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 95.17 | |
| d3clsd2 | 123 | C-terminal domain of the electron transfer flavopr | 95.12 | |
| d2ji7a2 | 188 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 94.72 | |
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 94.59 | |
| d1efva2 | 124 | C-terminal domain of the electron transfer flavopr | 94.53 | |
| d1q6za2 | 180 | Benzoylformate decarboxylase {Pseudomonas putida [ | 94.51 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 94.05 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 93.09 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 92.62 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 92.38 | |
| d1ovma2 | 178 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 92.0 | |
| d1j8fa_ | 323 | Sirt2 histone deacetylase {Human (Homo sapiens) [T | 91.81 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 90.61 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 89.73 | |
| d1s5pa_ | 235 | NAD-dependent deacetylase CobB {Escherichia coli [ | 88.43 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 86.72 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 85.61 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 85.48 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 84.81 | |
| d1pnoa_ | 180 | Transhydrogenase domain III (dIII) {Rhodospirillum | 84.61 | |
| d1q1aa_ | 289 | Hst2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 84.57 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 83.99 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 83.93 | |
| d2b4ya1 | 267 | NAD-dependent deacetylase sirtuin-5 {Human (Homo s | 83.62 | |
| d1yc5a1 | 245 | NAD-dependent deacetylase NpdA {Thermotoga maritim | 83.35 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 82.2 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 81.95 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 81.47 | |
| d1ma3a_ | 252 | AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeog | 81.27 | |
| d1m2ka_ | 249 | AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeo | 80.94 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 80.29 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 80.05 |
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=100.00 E-value=8.1e-42 Score=360.60 Aligned_cols=232 Identities=18% Similarity=0.236 Sum_probs=204.4
Q ss_pred cceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 041113 641 STSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720 (983)
Q Consensus 641 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~ 720 (983)
|++||+|+++....+++++.+.++.+.++||++||+|+|.. ++++|+++|+++|+++|+++.|++|+|++|++++|+++
T Consensus 3 r~~vP~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~-~~~~D~~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~ 81 (244)
T d2chra1 3 RSAIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFR-SPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVY 81 (244)
T ss_dssp CSEEEBEEEECSSCHHHHHHHHHHHHHTTSCCEEEEECSSS-CHHHHHHHHHHHHHHTTTTSEEEEECTTCCCTHHHHHH
T ss_pred CCcEEEEEEEcCCCcHHHHHHHHHHHHhCCCCEEEEEcCCC-CHHHHHHHHHHHHHhcCCCceEEEeCCCCcchHHHHHH
Confidence 68899999986556666666666777778999999999973 89999999999999999999999999999999999999
Q ss_pred HhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHH
Q 041113 721 GFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLI 797 (983)
Q Consensus 721 ~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~ 797 (983)
++.|+++++.|+|||++ |++++++|++++++||++||++++..+ +..+++.+ +|++++|++++||+++++++
T Consensus 82 ~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~-----~~~~i~~~~~d~v~~d~~~~GGit~~~~i 156 (244)
T d2chra1 82 IPELEALGVELIEQPVGRENTQALRRLSDNNRVAIMADESLSTLAS-----AFDLARDRSVDVFSLKLCNMGGVSATQKI 156 (244)
T ss_dssp HHHHHTTTCCEEECCSCSSCHHHHHHHHHHCSSEEEESSSCCSHHH-----HHHHHTTTCCSEECCCHHHHTSHHHHHHH
T ss_pred HHHHhhhhHHHHhhhhhhccchhhhhhccceeeeeeecccccccch-----hhhhhhcceeEEEeeccccccchHHHHHH
Confidence 99999999999999998 788999999999999999999999753 66666655 79999999999999999999
Q ss_pred HHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----c
Q 041113 798 ARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----N 873 (983)
Q Consensus 798 ~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~ 873 (983)
+++|+++|+++++||+++++|+.++++|++++++|.. ..+.+....++.++++.+|+.+++ +
T Consensus 157 ~~~a~~~gi~~~~~~~~~~~i~~~a~~hl~a~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 222 (244)
T d2chra1 157 AAVAEASGIASYGGTMLDSTIGTSVALQLYSTVPSLP--------------FGCELIGPFVLADTLSHEPLEIRDYELQV 222 (244)
T ss_dssp HHHHHHHTCEECCCCCSCCHHHHHHHHHHHTTSSCCT--------------TCBCCCHHHHBSCCSBSCCCCBCSSEEEC
T ss_pred HHHHHHcCCCeeeccccccccchhHHHHHHHhCCCCc--------------ceeccCchhhhhhhcccCCceeECCEEEC
Confidence 9999999999999999999999999999999998642 112233445567788888998884 9
Q ss_pred CCCCeeeEEecchhhhhhhcc
Q 041113 874 SCRGFVEASVAKATHILQNLQ 894 (983)
Q Consensus 874 P~~pGlGv~~d~a~~~~~~~~ 894 (983)
|++||||+++| ++.++++.
T Consensus 223 p~~pGlGv~~d--~~~l~~~~ 241 (244)
T d2chra1 223 PTGVGHGMTLD--EDKVRQYA 241 (244)
T ss_dssp CCSSSTTCCBC--HHHHHHHC
T ss_pred CCCCCCCeEEC--HHHHHHHh
Confidence 99999999999 88888765
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=100.00 E-value=3e-41 Score=356.54 Aligned_cols=232 Identities=21% Similarity=0.263 Sum_probs=202.3
Q ss_pred cceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 041113 641 STSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720 (983)
Q Consensus 641 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~ 720 (983)
|++||+|+++....+++++.+.++.+.++||++||+|+|. .++++|+++|+++|+++|+++.|++|+|++||+++|+++
T Consensus 3 R~~ipv~~~~~~~~~~~~~~e~~~~~~~~G~~~~KiKvG~-~~~~~Di~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~ 81 (243)
T d1nu5a1 3 RTSIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGA-RTPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIW 81 (243)
T ss_dssp CSEEEBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSS-SCHHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHH
T ss_pred CCceEEEEEEcCCChHHHHHHHHHHHHhCCCCEEEEEeCC-CCHHHHHHHHHHHHHHhCcccceEEECCCCccchhHHHH
Confidence 6789999998655555555555566667899999999997 389999999999999999999999999999999999999
Q ss_pred HhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHH
Q 041113 721 GFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLI 797 (983)
Q Consensus 721 ~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~ 797 (983)
++.|+++++.|+|||++ +++++++|++++++||++||++.+..+ +..+++.+ +|++++|++++||+++++++
T Consensus 82 ~~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~ipIa~gE~~~~~~~-----~~~~i~~~~~d~~~~d~~~~GGit~~~~i 156 (243)
T d1nu5a1 82 IPRLEEAGVELVEQPVPRANFGALRRLTEQNGVAILADESLSSLSS-----AFELARDHAVDAFSLKLCNMGGIANTLKV 156 (243)
T ss_dssp HHHHHHHTCCEEECCSCTTCHHHHHHHHHHCSSEEEESTTCCSHHH-----HHHHHHTTCCSEEEECHHHHTSHHHHHHH
T ss_pred HHHhcchhhhhhhhhhhhccccccccchhccccccccccccccchh-----hhhccccccccccccccccccchHHHHHH
Confidence 99999999999999998 789999999999999999999999764 55566555 69999999999999999999
Q ss_pred HHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----c
Q 041113 798 ARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----N 873 (983)
Q Consensus 798 ~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~ 873 (983)
+++|+++|+++++||+++++|+.++++|+++++||.. ..+.+....++.++++.+|+.+++ +
T Consensus 157 ~~~a~~~gi~~~~~~~~~s~i~~~a~~h~~aa~p~~~--------------~~~~~~~~~~~~~~~~~~~~~i~~G~~~~ 222 (243)
T d1nu5a1 157 AAVAEAAGISSYGGTMLDSTVGTAAALHVYATLPSLP--------------YGCELIGPWVLGDRLTQQDLEIKDFEVHL 222 (243)
T ss_dssp HHHHHHHTCEEEECCSSCCHHHHHHHHHHHTTSSCCT--------------TCBCCCHHHHBSSCSBSSCCCEETTEEEC
T ss_pred HHHHHHcCCCcccccccchhhhHHHHHHHHHhCCCCc--------------eeeecCchHHhhhhcccCCCeEECCEEEC
Confidence 9999999999999999999999999999999998641 112233344567788899999984 9
Q ss_pred CCCCeeeEEecchhhhhhhcc
Q 041113 874 SCRGFVEASVAKATHILQNLQ 894 (983)
Q Consensus 874 P~~pGlGv~~d~a~~~~~~~~ 894 (983)
|++|||||++| ++.+++|+
T Consensus 223 p~~pGlGv~~d--~d~l~~y~ 241 (243)
T d1nu5a1 223 PLGSGLGVDLD--HDKVRHYT 241 (243)
T ss_dssp CCSSBTSCCBC--HHHHHHHB
T ss_pred CCCCCcCeeEC--HHHHHHHh
Confidence 99999999999 88888876
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=3.9e-41 Score=355.42 Aligned_cols=231 Identities=17% Similarity=0.211 Sum_probs=202.3
Q ss_pred cceeEEEEeecCCCCHHHHHHHHHHhh-hcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 041113 641 STSIKICALIDSNKSPVEVASIATTLV-EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALE 719 (983)
Q Consensus 641 ~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~ 719 (983)
|++||+|+++. ..++++..+++.+.+ ++||++||+|+|.. ++++|+++|+++|+++|+++.|++|+|++||+++|++
T Consensus 3 rd~ipv~~~~~-~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~-~~~~Di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~ 80 (242)
T d1muca1 3 RDSLEVAWTLA-SGDTARDIAEARHMLEIRRHRVFKLKIGAN-PVEQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIR 80 (242)
T ss_dssp CSEEEBCEEEC-CSCHHHHHHHHHHHHHTTSCSEEEEECSSS-CHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHH
T ss_pred CceEEEEEEec-CCCcHHHHHHHHHHHHHCCCCEEEEEECCC-CHHHHHHHHHHHHHHhCCCCEEEEecCCCCcHHHHHH
Confidence 68999999884 456666666666655 58999999999973 7899999999999999999999999999999999999
Q ss_pred HHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHH
Q 041113 720 FGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGL 796 (983)
Q Consensus 720 ~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~ 796 (983)
+++.|+++++.|||||++ +.+++++|++++++||++||++++..+ +..+++.+ +|++++|++++||+|++++
T Consensus 81 ~~~~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~~pIa~~E~~~~~~~-----~~~~i~~~~~d~~~~d~~~~GGit~~~~ 155 (242)
T d1muca1 81 ACQVLGDNGIDLIEQPISRINRGGQVRLNQRTPAPIMADESIESVED-----AFSLAADGAASIFALKIAKNGGPRAVLR 155 (242)
T ss_dssp HHHHHHHTTCCCEECCBCTTCHHHHHHHHHHCSSCEEESTTCSSHHH-----HHHHHHHTCCSEEEECHHHHTSHHHHHH
T ss_pred HHHHhhhhhHHHhhcchhhhhhhhhhhhhhhhhheeecccccccccc-----hhhhhhcccccccccccccchhHHHHHH
Confidence 999999999999999998 788999999999999999999999763 55566544 7999999999999999999
Q ss_pred HHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----
Q 041113 797 IARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH---- 872 (983)
Q Consensus 797 ~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~---- 872 (983)
++++|+++|+++++|++++++|++++++|++++++|+. ....+....++.+|++.+|+.+++
T Consensus 156 i~~~A~~~gi~~~~~~~~~~~i~~~a~~h~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~i~~G~~~ 221 (242)
T d1muca1 156 TAQIAEAAGIGLYGGTMLEGSIGTLASAHAFLTLRQLT--------------WGTELFGPLLLTEEIVNEPPQYRDFQLH 221 (242)
T ss_dssp HHHHHHHHTCEEEECCSSCCHHHHHHHHHHHTTCSCCT--------------TCBCCCGGGGBSSCSBSSCCEEETTEEE
T ss_pred HHHHHHhCCCCcccccccccccchhhhhhHHhhccccc--------------cccccCchhhhhhhhccCCCeEECCEEE
Confidence 99999999999999999999999999999999998642 112233455678888899999984
Q ss_pred cCCCCeeeEEecchhhhhhhcc
Q 041113 873 NSCRGFVEASVAKATHILQNLQ 894 (983)
Q Consensus 873 ~P~~pGlGv~~d~a~~~~~~~~ 894 (983)
+|++||||+++| ++.+++|.
T Consensus 222 ~p~~pGlGi~~d--~d~l~~y~ 241 (242)
T d1muca1 222 IPRTPGLGLTLD--EQRLARFA 241 (242)
T ss_dssp CCCCSBTSCCBC--HHHHHHHB
T ss_pred CCCCCCCCeEEC--HHHHHHhc
Confidence 999999999999 88888764
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=100.00 E-value=1.6e-39 Score=343.61 Aligned_cols=230 Identities=20% Similarity=0.308 Sum_probs=201.6
Q ss_pred cceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 041113 641 STSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720 (983)
Q Consensus 641 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~ 720 (983)
|++||+|++++...+++++.+++++++++||++||+|+|. ++|+++++++|+++|+++.||+|+|++|++++|+++
T Consensus 2 R~~ipvy~s~g~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~----~~Di~~i~~ir~~~g~~~~l~vDaN~~~~~~~a~~~ 77 (242)
T d1sjda1 2 RDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEP----GWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQL 77 (242)
T ss_dssp CSEEEBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECBT----TBSHHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHH
T ss_pred CCeeEeeEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCc----hhHHHHHHHHHHHhCCCeeEeeccccccchhhhhHH
Confidence 5889999998766799999999999999999999999974 579999999999999999999999999999999998
Q ss_pred HhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHH
Q 041113 721 GFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLI 797 (983)
Q Consensus 721 ~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~ 797 (983)
.+ |+++++.|||||++ +++++++|++.+++||++||++++..+ +..+++.+ +|++++|++++||+|+++++
T Consensus 78 ~~-l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~pia~gE~~~~~~~-----~~~~~~~~~~d~~~~d~~~~GGit~~~~i 151 (242)
T d1sjda1 78 AR-LDPFGLLLIEQPLEEEDVLGHAELARRIQTPICLDESIVSARA-----AADAIKLGAVQIVNIKPGRVGGYLEARRV 151 (242)
T ss_dssp HT-TGGGCCSEEECCSCTTCHHHHHHHHTTCSSCEEESTTCCSHHH-----HHHHHHTTCCSEEEECTTTTTSHHHHHHH
T ss_pred hh-hhhhhhHHHHhhhhhhhHHHHHHHHhccCcccccccccccchh-----hhhhhhcCccCEEEeccccCccchhhhHH
Confidence 86 99999999999998 788899999999999999999999763 66667665 79999999999999999999
Q ss_pred HHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----c
Q 041113 798 ARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----N 873 (983)
Q Consensus 798 ~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~ 873 (983)
+++|+++|+++++|+++++++++++++|+++..++ ...++.....++..+++.+|+.+++ +
T Consensus 152 ~~~A~~~~i~~~~h~~~~~~i~~~a~~~~a~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~ 216 (242)
T d1sjda1 152 HDVCAAHGIPVWCGGMIETGLGRAANVALASLPNF---------------TLPGDTSASDRFYKTDITEPFVLSGGHLPV 216 (242)
T ss_dssp HHHHHHTTCCEEECCCCCCHHHHHHHHHHHTSTTB---------------CSCBSCCCGGGTCSSCSSSCCCCSSSEEEC
T ss_pred HHHHHHCCCEEeecccccchhHHHHHHHHhhcccc---------------ccccccccchhhhHhhccCCCeEECCEEEC
Confidence 99999999999999999999999999999865442 1122233344445556677888874 9
Q ss_pred CCCCeeeEEecchhhhhhhccccc
Q 041113 874 SCRGFVEASVAKATHILQNLQINN 897 (983)
Q Consensus 874 P~~pGlGv~~d~a~~~~~~~~~~~ 897 (983)
|++||||+++| ++.++++++.+
T Consensus 217 p~~pGLGie~d--~~~l~~~~~~~ 238 (242)
T d1sjda1 217 PTGPGLGVAPI--PELLDEVTTAK 238 (242)
T ss_dssp CCSSBTSCCCC--HHHHHHHEEEE
T ss_pred CCCCCCcEEEC--HHHHHHhhcCC
Confidence 99999999999 99999998664
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=100.00 E-value=1.6e-39 Score=343.83 Aligned_cols=233 Identities=21% Similarity=0.324 Sum_probs=204.5
Q ss_pred cceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 041113 641 STSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720 (983)
Q Consensus 641 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~ 720 (983)
|++||+|++++...+++++++++++++++||++||+|+|. ++|+++++++|+++ +++.||+|+|++||.++|+ +
T Consensus 2 r~~i~~~~s~g~~~~~e~~~~~~~~~~~~Gf~~~Kikvg~----~~D~~~v~~ir~~~-~~~~l~vDaN~~~~~~~a~-~ 75 (244)
T d1wufa1 2 KESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAP----NKDIQFVEAVRKSF-PKLSLMADANSAYNREDFL-L 75 (244)
T ss_dssp CSEEEBCEEECCCSCHHHHHHHHHHHHHHTCCEEEEECBT----TBSHHHHHHHHTTC-TTSEEEEECTTCCCGGGHH-H
T ss_pred CCeEEEeEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEeCC----cHHHHHHHHHHHhc-cchhhhhhhhccccchhhh-h
Confidence 6899999999766799999999999999999999999985 46899999999999 5799999999999999998 5
Q ss_pred HhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHH
Q 041113 721 GFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLI 797 (983)
Q Consensus 721 ~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~ 797 (983)
+++|+++++.|||||++ +++++++|++.+++||++||++++..+ +..+++.+ +|++++|++++||+++++++
T Consensus 76 ~~~l~~~~~~wiEeP~~~~d~~~~~~l~~~~~~pia~dE~~~~~~~-----~~~~i~~~a~d~v~~d~~~~GGit~~~ki 150 (244)
T d1wufa1 76 LKELDQYDLEMIEQPFGTKDFVDHAWLQKQLKTRICLDENIRSVKD-----VEQAHSIGSCRAINLKLARVGGMSSALKI 150 (244)
T ss_dssp HHTTGGGTCSEEECCSCSSCSHHHHHHHTTCSSEEEECTTCCSHHH-----HHHHHHHTCCSEEEECTGGGTSHHHHHHH
T ss_pred hhcccccchhhhcCcccccchhhhhccccccccccccCccccchhh-----hhhhccccccceeecccccccchhhHHHH
Confidence 58899999999999998 789999999999999999999998763 55666555 69999999999999999999
Q ss_pred HHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----c
Q 041113 798 ARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----N 873 (983)
Q Consensus 798 ~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~ 873 (983)
+++|+++|+++++|++++++++.++++|+++..++.. +.++ .....++.+|++.+|+.+++ +
T Consensus 151 ~~~a~~~gi~v~~h~~~~~~i~~~~~~~~~~~~~~~~-------~~~~-------~~~~~~~~~~l~~~~~~i~~G~i~~ 216 (244)
T d1wufa1 151 AEYCALNEILVWCGGMLEAGVGRAHNIALAARNEFVF-------PGDI-------SASNRFFAEDIVTPAFELNQGRLKV 216 (244)
T ss_dssp HHHHHHTTCEEEECCCCCCHHHHHHHHHHHTSSSCCS-------CBSC-------CCGGGTBSSCSBSSCCCCCSSEEEC
T ss_pred HHHHHHcCCEEecCCCCCccHHHHHHHHHHhccCccc-------hhhh-------cccchhhhhhccCCCceEECCEEEC
Confidence 9999999999999999999999999999999877421 0011 12346678899999999884 9
Q ss_pred CCCCeeeEEecchhhhhhhcccccccc
Q 041113 874 SCRGFVEASVAKATHILQNLQINNDVI 900 (983)
Q Consensus 874 P~~pGlGv~~d~a~~~~~~~~~~~~~i 900 (983)
|++||||+++| ++.+++++++...+
T Consensus 217 p~~pGLGie~d--~~~l~~~~~~~~~i 241 (244)
T d1wufa1 217 PTNEGIGVTLD--LKVLKKYTKSTEEI 241 (244)
T ss_dssp CCSSBTSCCBC--HHHHHTTEEEEEEE
T ss_pred CCCCCcCeeEC--HHHHHHhhCCceEE
Confidence 99999999999 99999999876544
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.9e-39 Score=346.61 Aligned_cols=233 Identities=13% Similarity=0.151 Sum_probs=199.1
Q ss_pred cceeEEEEeec---------CCCCHHHHHHHHHHhhhcCCCEEEEeccCC----------------------CChHHHHH
Q 041113 641 STSIKICALID---------SNKSPVEVASIATTLVEEGFTAIKLKVARR----------------------ADPIKDAE 689 (983)
Q Consensus 641 ~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~G~~~~KiKig~~----------------------~~~~~d~~ 689 (983)
+++|++|++.. ...+|+++++++++++++||++||++++.. .+++.|++
T Consensus 3 ~dki~~YAs~~~~~~~~~~~~~~tPe~~~~~a~~~~~~Gf~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~ 82 (278)
T d2gl5a1 3 NEKLRTYASQLQFGWGDKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEA 82 (278)
T ss_dssp CSSEEEEEECGGGCCTTCCSCCCSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHH
T ss_pred CCceeccccCCcCCCCcccccCCCHHHHHHHHHHHHHcCCCEEEEccccCCccccccccccccccccccccHHHHHHHHH
Confidence 68999999842 235899999999999999999999987531 12567999
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChH
Q 041113 690 VIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPL 767 (983)
Q Consensus 690 ~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~ 767 (983)
+|++||+++|+++.||+|+|++||.++|+++++.|+++++.|+|||++ +.+++++|++++++||++||++++..+
T Consensus 83 ~v~aiRe~vG~~~~l~vDan~~~~~~~Ai~~~~~L~~~~l~wiEePi~~~d~~~~~~L~~~~~ipIa~gE~~~~~~~--- 159 (278)
T d2gl5a1 83 RIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRIFLYEEPIHPLNSDNMQKVSRSTTIPIATGERSYTRWG--- 159 (278)
T ss_dssp HHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEECSSCSSCHHHHHHHHHHCSSCEEECTTCCTTHH---
T ss_pred HHHHHHHHhccccceeecccccccchhhHHHHHHhcccccceecccccccchhhhhhhccccccceecccccCChHH---
Confidence 999999999999999999999999999999999999999999999998 899999999999999999999999864
Q ss_pred HHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCC
Q 041113 768 NMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELC 846 (983)
Q Consensus 768 ~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~ 846 (983)
+..+++.+ +|++|+|++++||||++++++++|+++|++++ +|+++++|+.++++|++++++|+. . .++.
T Consensus 160 --~~~~i~~~a~di~~~d~~~~GGit~~~kia~la~~~gi~v~-~H~~~~~i~~~a~~hl~aa~~n~~--~---~e~~-- 229 (278)
T d2gl5a1 160 --YRELLEKQSIAVAQPDLCLCGGITEGKKICDYANIYDTTVQ-VHVCGGPVSTVAALHMETAIPNFI--I---HEHH-- 229 (278)
T ss_dssp --HHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEEC-CCCCSSHHHHHHHHHHHHHCTTBC--C---EEEE--
T ss_pred --HhhhhccccceeEeeccccccchhhHHHhhhhhhhhccccc-cccccCchhhhhhhhhhhccCcee--e---eecc--
Confidence 66666555 69999999999999999999999999999965 567899999999999999999742 1 1111
Q ss_pred CCCccCccchhcccccCCCCCceeec----cCCCCeeeEEecchhhhhhhcc
Q 041113 847 PPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEASVAKATHILQNLQ 894 (983)
Q Consensus 847 ~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~ 894 (983)
......+..+++.+++.+++ +|++||||+++| ++.++++.
T Consensus 230 ------~~~~~~~~~~l~~~~~~~~~G~~~~p~~PGLGie~d--e~~l~~y~ 273 (278)
T d2gl5a1 230 ------TNAMKASIRELCTHDYQPENGYYVAPEQPGLGQELN--DEVVKEYL 273 (278)
T ss_dssp ------TTTTCHHHHTTBSSCCCCBTTEECCCCSSBTSCCBC--HHHHTTTE
T ss_pred ------ccchhhhHHhhccCCCeeeCCEEECCCCCCCceeeC--HHHHhhcc
Confidence 11223344578888888884 999999999999 78877764
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1e-38 Score=339.44 Aligned_cols=234 Identities=16% Similarity=0.217 Sum_probs=196.0
Q ss_pred cceeEEEEeecCCC----CHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHH
Q 041113 641 STSIKICALIDSNK----SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQE 716 (983)
Q Consensus 641 ~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~ 716 (983)
|++||+|++++... +.+++++++++++++||++||+|+|. .++++|+++|+++|+++|+++.||+|+|++|++++
T Consensus 3 Rd~ip~Yas~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~-~~~~~di~~v~avr~~~G~~~~l~vDan~~~~~~~ 81 (256)
T d2gdqa1 3 REEIPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIGG-TSFKEDVRHINALQHTAGSSITMILDANQSYDAAA 81 (256)
T ss_dssp CSEEEEEEECCCBCSSTTHHHHHHHHHHHHHTTTCCEEEEECSS-SCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHH
T ss_pred CCeEEeCeecCcCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC-CCHHHHHHHHHHHHHHcCCCeEEeeccccCCCHHH
Confidence 78999999874322 35778889999999999999999996 48999999999999999999999999999999999
Q ss_pred HHHHHhhcccC-CCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHH
Q 041113 717 ALEFGFLIKDC-DLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFE 792 (983)
Q Consensus 717 a~~~~~~l~~~-~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~ 792 (983)
|+++++.|+++ ++.|||||++ |++++++|++++++||++||++++..+ +..+++.+ +|++|+|++++||++
T Consensus 82 A~~~~~~l~~~~~i~~~EeP~~~~d~~~~~~l~~~~~ipIa~gE~~~~~~~-----~~~~i~~~a~di~~~d~~~~GGit 156 (256)
T d2gdqa1 82 AFKWERYFSEWTNIGWLEEPLPFDQPQDYAMLRSRLSVPVAGGENMKGPAQ-----YVPLLSQRCLDIIQPDVMHVNGID 156 (256)
T ss_dssp HHTTHHHHTTCSCEEEEECCSCSSCHHHHHHHHTTCSSCEEECTTCCSHHH-----HHHHHHTTCCSEECCCTTTTTHHH
T ss_pred HHHHHHHHhhcCceeEeccccccchHHHHHHHhhcccceeecCccccchhh-----HHHHHHhhcceeeeccccccccHH
Confidence 99999999996 7999999998 789999999999999999999998753 66666554 799999999999999
Q ss_pred HHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCC-----
Q 041113 793 NAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDP----- 867 (983)
Q Consensus 793 ~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p----- 867 (983)
++++++++|+++|+++ ++|+++++++.++++|++++++|.... +. ....++..+++.++
T Consensus 157 ~~~~i~~~a~~~~i~v-~~h~~~~~i~~~a~~~~~~~~~~~~~~-----~~----------~~~~~~~~~~~~~~~~~~~ 220 (256)
T d2gdqa1 157 EFRDCLQLARYFGVRA-SAHAYDGSLSRLYALFAQACLPPWSKM-----KN----------DHIEPIEWDVMENPFTDLV 220 (256)
T ss_dssp HHHHHHHHHHHHTCEE-CCCCSSCSHHHHHHHHHHHTSCCSSSC-----TT----------SCSCCEEEECSSCGGGGGB
T ss_pred HHHHHHHHHhhhcccc-cccccccccchHHHHHHHHhCccchhh-----cc----------ccccceeeccccccccccC
Confidence 9999999999999996 567899999999999999999864210 00 01112222333332
Q ss_pred -ceee----ccCCCCeeeEEecchhhhhhhcccccc
Q 041113 868 -ISIC----HNSCRGFVEASVAKATHILQNLQINND 898 (983)
Q Consensus 868 -~~~~----~~P~~pGlGv~~d~a~~~~~~~~~~~~ 898 (983)
+.++ .+|++||||+++| ++.+++++++..
T Consensus 221 ~~~~~~G~~~~p~~pGLGieid--~~~l~~y~~~~~ 254 (256)
T d2gdqa1 221 SLQPSKGMVHIPKGKGIGTEIN--MEIVNRYKWDGS 254 (256)
T ss_dssp CCCCBTTEEECCCSSBTSSCBC--HHHHHHTBCCSC
T ss_pred CceeeCCEEECCCCCCCCeEeC--HHHHhhCCCCCC
Confidence 3444 3999999999999 999999988754
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=8.4e-39 Score=338.08 Aligned_cols=230 Identities=20% Similarity=0.286 Sum_probs=202.3
Q ss_pred cceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 041113 641 STSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720 (983)
Q Consensus 641 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~ 720 (983)
|++|++|++++...+++++.+++++++++||++||+|+|. +.|+++|+++|+++| ++.||||+|++||.++|+++
T Consensus 2 r~~v~~y~s~g~~~~~e~~~~~~~~~~~~G~~~~KiKvg~----~~D~~~v~~ir~~~~-d~~l~vD~n~~~~~~~a~~~ 76 (243)
T d1r0ma1 2 KEQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKP----GWDVQPVRATREAFP-DIRLTVDANSAYTLADAGRL 76 (243)
T ss_dssp CSEEEBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECBT----TBSHHHHHHHHHHCT-TSCEEEECTTCCCGGGHHHH
T ss_pred CCEEEeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcCc----chhHHHHHHHHHhcc-CceEEEeccccCchHHHHHh
Confidence 5889999998767789999999999999999999999985 468999999999995 89999999999999999986
Q ss_pred HhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHH
Q 041113 721 GFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLI 797 (983)
Q Consensus 721 ~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~ 797 (983)
+.|+++++.|||||++ ++++++++++++++||++||++++..+ +..+++ ..+|++++|++++||+|+++++
T Consensus 77 -~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~ipia~gE~~~~~~~-----~~~~i~~~~~d~v~~d~~~~GGit~~~~i 150 (243)
T d1r0ma1 77 -RQLDEYDLTYIEQPLAWDDLVDHAELARRIRTPLCLDESVASASD-----ARKALALGAGGVINLKVARVGGHAESRRV 150 (243)
T ss_dssp -HTTGGGCCSCEECCSCTTCSHHHHHHHHHCSSCEEESTTCCSHHH-----HHHHHHHTSCSEEEECTTTTTSHHHHHHH
T ss_pred -hhhhhccchhhhhhccccchHHHHHHhhcCCcccccccchhhhhh-----hhhhhhcccccceecccceeccHHHHHHH
Confidence 8899999999999999 789999999999999999999999764 555555 4579999999999999999999
Q ss_pred HHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----c
Q 041113 798 ARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----N 873 (983)
Q Consensus 798 ~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~ 873 (983)
+++|+++|+++++||+++++++.++++|++++.++... ........++.+|++.+|+.+++ +
T Consensus 151 ~~~A~~~gi~v~~h~~~~~~i~~~a~~h~~a~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~i~~G~~~~ 216 (243)
T d1r0ma1 151 HDVAQSFGAPVWCGGMLESGIGRAHNIHLSTLSNFRLP--------------GDTSSASRYWERDLIQEPLEAVDGLMPV 216 (243)
T ss_dssp HHHHHHTTCCEEECCCCCCHHHHHHHHHHTTSTTBCSC--------------BSCCCGGGTBSSCSBSSCCCCBTTEEEC
T ss_pred HHHHHHCCCceecccccccchhhhHHHHHHhhcccccc--------------ccccccchhhhhhhcCCCCeeECCEEEC
Confidence 99999999999999999999999999999998774310 01123345677889999999884 9
Q ss_pred CCCCeeeEEecchhhhhhhccccc
Q 041113 874 SCRGFVEASVAKATHILQNLQINN 897 (983)
Q Consensus 874 P~~pGlGv~~d~a~~~~~~~~~~~ 897 (983)
|++||||+++| ++.+++++...
T Consensus 217 p~~pGlGie~d--~~~l~~~~~~~ 238 (243)
T d1r0ma1 217 PQGPGTGVTLD--REFLATVTEAQ 238 (243)
T ss_dssp CCSSBTSCCBC--HHHHHHTEEEE
T ss_pred CCCCCCcEeEC--HHHHHHHHHHH
Confidence 99999999999 89998887553
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=5.8e-38 Score=329.79 Aligned_cols=220 Identities=25% Similarity=0.334 Sum_probs=196.6
Q ss_pred cceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 041113 641 STSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720 (983)
Q Consensus 641 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~ 720 (983)
|++|++|+++ +..+|+++.+++++++++||++||+|+|. .++++|+++|+++|+++|+++.||+|+|++||.++|+++
T Consensus 2 r~~v~~~~t~-~~~~pe~~~~~a~~~~~~G~~~~Kikig~-~~~~~d~~~i~~ir~~~g~~~~i~vD~N~~~~~~~a~~~ 79 (234)
T d1jpma1 2 RDTLETDYTV-SVNSPEEMAADAENYLKQGFQTLKIKVGK-DDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTA 79 (234)
T ss_dssp CSEEEBCEEE-CCSCHHHHHHHHHHHHHTTCCEEEEECSS-SCHHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHH
T ss_pred CCcceEEEEE-cCCCHHHHHHHHHHHHHCCCCEEEEECCC-CCHHHHHHHHHHHHHHcCchhhhhhhcccccchHHHHHH
Confidence 6889999988 46799999999999999999999999997 489999999999999999999999999999999999999
Q ss_pred Hhhccc--CCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHH
Q 041113 721 GFLIKD--CDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAG 795 (983)
Q Consensus 721 ~~~l~~--~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~ 795 (983)
++.|++ +++.|+|||++ |+++++++++++++||++||++++..+ +..+++. .+|++++|++++||+++++
T Consensus 80 ~~~le~~~~~i~~~EeP~~~~d~~~~~~l~~~~~~pia~gE~~~~~~~-----~~~~i~~~~~d~v~~d~~~~GGit~~~ 154 (234)
T d1jpma1 80 IRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQ-----AFEVLQTRSADLINIKLMKAGGISGAE 154 (234)
T ss_dssp HHHHHHTTCCEEEEECCSCTTCHHHHHHHHHHCSSCEEESTTCSSHHH-----HHHHHHTTCCSEEEECHHHHTSHHHHH
T ss_pred HHHHHhccCceeeecCCccccCHHHHHHhhccccceeecccccccchh-----hhhhhccCCcCeEEEeeecCCCHHHHH
Confidence 999986 57799999998 788999999999999999999998753 5566654 4799999999999999999
Q ss_pred HHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec---
Q 041113 796 LIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH--- 872 (983)
Q Consensus 796 ~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~--- 872 (983)
+++++|+++|+++++||++++++++++++|+++++++.. .+.+++..++.+|++.+++.+++
T Consensus 155 ~i~~~a~~~g~~~~~~~~~~~~i~~~a~~~~aa~~~~~~---------------~~e~~~~~~~~~~~~~~~~~~~~G~l 219 (234)
T d1jpma1 155 KINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNIT---------------RFDFDAPLMLKTDVFNGGITYSGSTI 219 (234)
T ss_dssp HHHHHHHHTTCCEEECCSSCCHHHHHHHHHHHHHCTTEE---------------EECCCGGGGBSSCCEEESCEEETTEE
T ss_pred HHHHHHHhcCeeEeecccccCCchHHHHHHHHHhccCCc---------------eeecCCchhhhhhccCCCceEECCEE
Confidence 999999999999999999999999999999999988631 12234455677888888898884
Q ss_pred -cCCCCeeeEE
Q 041113 873 -NSCRGFVEAS 882 (983)
Q Consensus 873 -~P~~pGlGv~ 882 (983)
+|++|||||-
T Consensus 220 ~~p~~pGLGi~ 230 (234)
T d1jpma1 220 SMPGKPGLGII 230 (234)
T ss_dssp ECCCSSBTCEE
T ss_pred ECCCCCeeeeE
Confidence 9999999984
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=100.00 E-value=4.3e-38 Score=332.47 Aligned_cols=229 Identities=21% Similarity=0.276 Sum_probs=199.1
Q ss_pred cceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 041113 641 STSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720 (983)
Q Consensus 641 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~ 720 (983)
|++||+|++++...+++++++++++++++||++||+|+|. +.|+++++++|+.+ +++.||||+|++|+.++|+++
T Consensus 2 r~~ipv~~s~g~~~~~~~~~~~~~~~~~~G~~~~Kikvg~----~~D~~~v~~ir~~~-~d~~l~vDaN~~~~~~~a~~~ 76 (241)
T d1wuea1 2 RRKIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRP----GYDVEPVALIRQHF-PNLPLMVDANSAYTLADLPQL 76 (241)
T ss_dssp CSEEECCEEECCCSCHHHHHHHHHHHHHTTCSCEEEECBT----TBSHHHHHHHHHHC-TTSCEEEECTTCCCGGGHHHH
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEcCc----cHHHHHHHHHHHhc-cccceeecccccCCHHHhhhh
Confidence 6789999998777899999999999999999999999985 46899999999999 689999999999999999987
Q ss_pred HhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHH
Q 041113 721 GFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLI 797 (983)
Q Consensus 721 ~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~ 797 (983)
. +++++++.|||||++ +++++++|++.+++|||+||++++..+ +..+++. .+|++++|++++||+++++++
T Consensus 77 ~-~~~~~~i~~iEeP~~~~~~~~~~~l~~~~~~pIa~gE~~~~~~~-----~~~~i~~~~~d~i~~d~~~~GGit~~~~i 150 (241)
T d1wuea1 77 Q-RLDHYQLAMIEQPFAADDFLDHAQLQRELKTRICLDENIRSLKD-----CQVALALGSCRSINLKIPRVGGIHEALKI 150 (241)
T ss_dssp H-GGGGSCCSCEECCSCTTCSHHHHHHHTTCSSCEEECTTCCSHHH-----HHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred h-hhhhhhhhhhcCcccccchhhhhhhhcccccccccCcccccchh-----hhhhhhhhhhhhhccccccccCcHHHHHH
Confidence 5 578899999999998 789999999999999999999998753 5555554 479999999999999999999
Q ss_pred HHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCcc-chhcccccCCCCCceeec----
Q 041113 798 ARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLG-TYQWLKEDVTTDPISICH---- 872 (983)
Q Consensus 798 ~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~d~~~~p~~~~~---- 872 (983)
+++|+++|+++++||++++++++++++|+++..++. ...++. ...++.+|++.+|+.+++
T Consensus 151 ~~~a~~~~i~v~~~~~~~~~i~~~a~~~~a~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~i~~G~~~ 215 (241)
T d1wuea1 151 AAFCQENDLLVWLGGMFESGVGRALNLQFASQPTFS---------------FPGDISATERYFYEDIITEPFILEQGTMT 215 (241)
T ss_dssp HHHHHHTTCEEEECCCCCCHHHHHHHHHHHTSTTCC---------------SCCSCCCGGGTBSCCSBSSCCCEETTEEE
T ss_pred HHHHHHcCCEEEecccccccccccchhhhccccccc---------------cccccccccchhhhhccCCCCeEECCEEE
Confidence 999999999999999999999999999998765431 111111 234567788899999984
Q ss_pred cCCCCeeeEEecchhhhhhhccccc
Q 041113 873 NSCRGFVEASVAKATHILQNLQINN 897 (983)
Q Consensus 873 ~P~~pGlGv~~d~a~~~~~~~~~~~ 897 (983)
+|++||||+++| ++.+++|+...
T Consensus 216 ~p~~pGlGi~~d--~~~l~ky~~~~ 238 (241)
T d1wuea1 216 VPQGLGIGVTLS--QTNLLKYSQYQ 238 (241)
T ss_dssp CCCSSBTCCCBC--HHHHHHHEEEE
T ss_pred CCCCCCCceEEC--HHHHHHHHHhh
Confidence 999999999999 88988887554
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=7.5e-38 Score=333.42 Aligned_cols=234 Identities=20% Similarity=0.199 Sum_probs=186.3
Q ss_pred cceeEEEEeecC-------CCCHHHHHHHHHHhhhcCCCEEEEeccCC-----CChHHHHHHHHHHHHHcCCCcEEEEEc
Q 041113 641 STSIKICALIDS-------NKSPVEVASIATTLVEEGFTAIKLKVARR-----ADPIKDAEVIQEVRKKVGHRIELRVDA 708 (983)
Q Consensus 641 ~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~G~~~~KiKig~~-----~~~~~d~~~v~~vr~~~g~~~~l~vDa 708 (983)
|++||+|++... ..+|+++++.+++++++||++||+|+|.+ .++++|+++|++||+++|+++.|+||+
T Consensus 2 Rd~i~~Yas~~~~~~~~~~~~tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~~d~~~v~avR~~~G~~~~l~vDa 81 (255)
T d1rvka1 2 RDKVLAYGSIMCGDELEGGLATPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDA 81 (255)
T ss_dssp CSEEEEEEEECCCCCCTTTTSSHHHHHHHHHHHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred CCeeEeceeecCCCccccCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCccccccCHHHHHHHHHHHHHHcCCccceeccc
Confidence 689999998642 34799999999999999999999999852 367999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcC
Q 041113 709 NRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKP 785 (983)
Q Consensus 709 N~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~ 785 (983)
|++||+++|+++++.|+++++.|||||++ |++++++|++++++||++||++.+..+ .+..+++ ..+|++|+|+
T Consensus 82 N~~~~~~~A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~l~~~~~~pI~~~E~~~~~~~----~~~~~i~~~~~dii~~d~ 157 (255)
T d1rvka1 82 FHWYSRTDALALGRGLEKLGFDWIEEPMDEQSLSSYKWLSDNLDIPVVGPESAAGKHW----HRAEWIKAGACDILRTGV 157 (255)
T ss_dssp CTTCCHHHHHHHHHHHHTTTCSEEECCSCTTCHHHHHHHHHHCSSCEEECSSCSSHHH----HHHHHHHTTCCSEEEECH
T ss_pred ccccccchhhhhhhhcccchhhhhcCCcccccHHHHHHHHHhcccceeehhhcccchh----hhhhhhhhchhhhccccc
Confidence 99999999999999999999999999998 788999999999999999999998542 3444544 4579999999
Q ss_pred CCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccc-cCC
Q 041113 786 SVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKE-DVT 864 (983)
Q Consensus 786 ~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-d~~ 864 (983)
+++||++++++++++|+++|++++.|++. .+++|++++++++... +.....+ ......+... ...
T Consensus 158 ~~~GGit~~~~i~~~a~~~gi~v~~h~~~------~~~~hl~a~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~ 223 (255)
T d1rvka1 158 NDVGGITPALKTMHLAEAFGMECEVHGNT------AMNLHVVAATKNCRWY-----ERGLLHP---FLEYDDGHDYLKSL 223 (255)
T ss_dssp HHHTSHHHHHHHHHHHHHTTCCEEECCCS------HHHHHHHHHCSSCCCE-----EEEEECT---TSCGGGCCTTBSSC
T ss_pred cccccchHHHHHHHHHHHhccceeccccc------hhHHHHHHHhhhhhhc-----ccccccc---cccccchhhhhhcc
Confidence 99999999999999999999998877754 3667888887754210 0000000 0111111111 122
Q ss_pred CCCceee----ccCCCCeeeEEecchhhhhhhccc
Q 041113 865 TDPISIC----HNSCRGFVEASVAKATHILQNLQI 895 (983)
Q Consensus 865 ~~p~~~~----~~P~~pGlGv~~d~a~~~~~~~~~ 895 (983)
.+|+ ++ .+|++|||||++| ++++++++|
T Consensus 224 ~~p~-~~~G~i~vp~~PGLGieid--~~~l~~y~V 255 (255)
T d1rvka1 224 SDPM-DRDGFVHVPDRPGLGEDID--FTFIDNNRV 255 (255)
T ss_dssp SSCB-CTTSEEECCSCSBTCCCBC--HHHHHHTBC
T ss_pred CCCe-eeCCEEECCCCCCCCeeEC--HHHHhhCcC
Confidence 3333 33 3999999999999 899998875
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=1.3e-36 Score=317.19 Aligned_cols=219 Identities=17% Similarity=0.105 Sum_probs=189.3
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhh
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFL 723 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~ 723 (983)
|++|.+. +.++++.+.+++++++++||++||+|+|.. ++++|+++|++||+.+|+++.||+|+|++||+++|+++++.
T Consensus 2 ~~ay~~~-~~d~~~~~~e~~~~~~~~G~~~~KikvG~~-~~~~di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~ 79 (227)
T d2mnra1 2 VQAYDSH-SLDGVKLATERAVTAAELGFRAVKTKIGYP-ALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQA 79 (227)
T ss_dssp EEEEEEC-CSCHHHHHHHHHHHHHHTTCSEEEEECCCS-SHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHH
T ss_pred ceeeccC-CCCcHHHHHHHHHHHHHCCCCEEEEccCCC-CHHHHHHHHHHHHHHhCCCcEEEEeccccCChHHHHHHHHH
Confidence 6778776 467889999999999999999999999973 78999999999999999999999999999999999999999
Q ss_pred cccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHH
Q 041113 724 IKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARW 800 (983)
Q Consensus 724 l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~ 800 (983)
|+++++.|||||++ +++++++|++++++||++||++++..+ +..+++.+ +|++++|++++||++++++++++
T Consensus 80 l~~~~~~~iEeP~~~~~~~~~~~l~~~~~ipia~gE~~~~~~~-----~~~~~~~~~~d~~~~d~~~~GGit~~~~i~~~ 154 (227)
T d2mnra1 80 LQQEGVTWIEEPTLQHDYEGHQRIQSKLNVPVQMGENWLGPEE-----MFKALSIGACRLAMPDAMKIGGVTGWIRASAL 154 (227)
T ss_dssp HHHHTCSEEECCSCTTCHHHHHHHHHTCSSCEEECTTCCSHHH-----HHHHHHTTCCSEECCBTTTTTHHHHHHHHHHH
T ss_pred hhhchhhhhcCcccccchhhhHHHHHHcCCccccCceeEeech-----hhhhHhcCceeeeecccccccchhhHHHHHHH
Confidence 99999999999998 788999999999999999999999753 55555544 69999999999999999999999
Q ss_pred HHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCC
Q 041113 801 AQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCR 876 (983)
Q Consensus 801 A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~ 876 (983)
|+++|++++.|++ ..+++|++++++|... + .+..+.++++.+++.+++ +|++
T Consensus 155 a~~~g~~~~~h~~------~~~~~hl~aa~~~~~~-----------------~-e~~~~~~~~~~~~~~i~~G~~~~p~~ 210 (227)
T d2mnra1 155 AQQFGIPMSSHLF------QEISAHLLAATPTAHW-----------------L-ERLDLAGSVIEPTLTFEGGNAVIPDL 210 (227)
T ss_dssp HHHHTCCBCCBSC------HHHHHHHHHTCTTBCC-----------------E-EECCSSGGGBCCCSEEETTEEECCSS
T ss_pred HHHcCCcccccch------hhhhhhhhhcCCccce-----------------e-ecccCchhhcCCCceeECCEEECCCC
Confidence 9999999664432 3578899999886421 0 112345677788999984 9999
Q ss_pred CeeeEEecchhhhhhhccc
Q 041113 877 GFVEASVAKATHILQNLQI 895 (983)
Q Consensus 877 pGlGv~~d~a~~~~~~~~~ 895 (983)
||||+++| ++.+++|.|
T Consensus 211 pGlGie~d--~~~l~ky~v 227 (227)
T d2mnra1 211 PGVGIIWR--EKEIGKYLV 227 (227)
T ss_dssp SBTCCCBC--HHHHHHHBC
T ss_pred CCCCEEEC--HHHHhhCcC
Confidence 99999999 888888764
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=100.00 E-value=9.7e-37 Score=323.58 Aligned_cols=233 Identities=19% Similarity=0.253 Sum_probs=188.2
Q ss_pred eEEEEeec--CCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHH
Q 041113 644 IKICALID--SNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFG 721 (983)
Q Consensus 644 i~~~~~~~--~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~ 721 (983)
+|+|++.. ...+++++.+++++++++||++||+|+|. ++++|+++|++||+++|+++.|++|+|++|+.++|++++
T Consensus 2 ~P~Ya~~~g~~~~s~ee~~~~a~~~~~~Gf~~~KikvG~--~~~~di~~v~~vr~~~g~~~~l~vDaN~~~~~~~A~~~~ 79 (252)
T d1yeya1 2 YPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGA--NVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWM 79 (252)
T ss_dssp EEEEECTTCC----CHHHHHHHHHHHHTTCSEEEEECCS--CHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHH
T ss_pred cCceeccCCcCCCCHHHHHHHHHHHHHcCCCEEEEECCC--CHHHHHHHHHHHHHHhCCCceEeeccccCcchHHHHHHH
Confidence 57787642 23478999999999999999999999996 799999999999999999999999999999999999999
Q ss_pred hhcccCCCceeecCCC--ChHHHHHHHhh-cCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHH
Q 041113 722 FLIKDCDLQYIEEPVQ--NEEDIIKYCEE-SGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLI 797 (983)
Q Consensus 722 ~~l~~~~i~~iEeP~~--~~~~~~~l~~~-~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~ 797 (983)
+.|+++++.|||||++ |.+++++++++ +++||++||++++..+ +..+++.+ +|++++|++++||||+++++
T Consensus 80 ~~l~~~~~~~iEeP~~~~d~~~~~~~~~~~~~ipia~gE~~~~~~~-----~~~~i~~~a~d~~~~d~~~~GGit~~~ki 154 (252)
T d1yeya1 80 RQLAEFDIAWIEEPTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVV-----FKQLLQAGAVDLIQIDAARVGGVNENLAI 154 (252)
T ss_dssp HTTGGGCCSCEECCSCTTCHHHHHHHHHHSTTSCEECCTTCCSHHH-----HHHHHHHTCCSEECCCTTTSSHHHHHHHH
T ss_pred HhhhhcCceeecCCcchhhHHHHHHHhhccCCCceeccccccchhh-----hhhHhhccccceeccccccccCchhhhHH
Confidence 9999999999999998 77788887766 6899999999999764 55666544 79999999999999999999
Q ss_pred HHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----c
Q 041113 798 ARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----N 873 (983)
Q Consensus 798 ~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~ 873 (983)
+++|+++|++++.|+..++.++.++++|.+++..+... ..........++ .+++.+|+.+++ +
T Consensus 155 a~~A~~~~i~v~~h~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~-~~~~~~~~~i~~G~v~v 221 (252)
T d1yeya1 155 LLLAAKFGVRVFPHAGGVGLCELVQHLAMADFVAITGK------------MEDRAIEFVDHL-HQHFLDPVRIQHGRYLA 221 (252)
T ss_dssp HHHHHHHTCEECCCCCTTTHHHHHHHHHHHHHHHTTCC------------CTTCCEEECCSS-GGGBSSCCCBSSSEECC
T ss_pred HHHHHHcCCEEecCCCCcHHHHHHHHHHHHhhhccccc------------cccccccchhhh-HHhcCCCCeEECCEEEC
Confidence 99999999997766555666666666777766553210 111112222333 345567888874 9
Q ss_pred CCCCeeeEEecchhhhhhhcccccc
Q 041113 874 SCRGFVEASVAKATHILQNLQINND 898 (983)
Q Consensus 874 P~~pGlGv~~d~a~~~~~~~~~~~~ 898 (983)
|++||||+++| ++.++++...+.
T Consensus 222 p~~pGLGield--~d~l~~y~~~~g 244 (252)
T d1yeya1 222 PEVPGFSAEMH--PASIAEFSYPDG 244 (252)
T ss_dssp CCSSBCSCCBC--HHHHHHHBTTTS
T ss_pred CCCCCCCeeEC--HHHHhhCCCCCC
Confidence 99999999999 999999886543
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=100.00 E-value=2.4e-36 Score=319.56 Aligned_cols=227 Identities=15% Similarity=0.112 Sum_probs=186.1
Q ss_pred cceeEEEEeecC---CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHH
Q 041113 641 STSIKICALIDS---NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEA 717 (983)
Q Consensus 641 ~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a 717 (983)
+++|++|++.+. ..+++++++++++++++||++||+|+|. .++++|+++|+++|+.+|+++.||+|+|++||+++|
T Consensus 3 ~~kv~vYas~g~~~~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~-~~~~~di~~v~~vr~~~g~~~~l~vDan~~~~~~~A 81 (247)
T d1tzza1 3 NPRVFVYAAGGYYYPGKGLSMLRGEMRGYLDRGYNVVKMKIGG-APIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETG 81 (247)
T ss_dssp CCEEEEEEECCCC----CHHHHHHHHHHHHTTTCSEEEEECSS-SCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHH
T ss_pred CCceEEEEeCCcCCCCcCHHHHHHHHHHHHHcCCCEEEEECCC-CCHHHHHHHHHHHHHhccCCceEEecccccccchhH
Confidence 578999998632 4689999999999999999999999997 389999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-----CceEEEEcCCCcCC
Q 041113 718 LEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-----GIVAIVIKPSVIGG 790 (983)
Q Consensus 718 ~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-----~~~~i~~k~~~~GG 790 (983)
+++++.|+++++.|||||++ +++++++|++++++||++||++++..+ +..+++. .+|++++|++++||
T Consensus 82 i~~~~~l~~~~i~wiEeP~~~~d~~~~~~l~~~~~ipia~gE~~~~~~~-----~~~~i~~~a~~~~~Di~~~d~~~~GG 156 (247)
T d1tzza1 82 IAYAKMLRDYPLFWYEEVGDPLDYALQAALAEFYPGPMATGENLFSHQD-----ARNLLRYGGMRPDRDWLQFDCALSYG 156 (247)
T ss_dssp HHHHHHHTTSCCSEEECCSCTTCHHHHHHHTTTCCSCEEECTTCCSHHH-----HHHHHHHSCCCTTTCEECCCTTTTTC
T ss_pred HHHHhhcchhhhhhhccccccccchhhhhhhhccccccccchhhhhhHH-----HHHHHHccCCcCcceeEeeccccccc
Confidence 99999999999999999998 788999999999999999999998764 5555432 25899999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCcee
Q 041113 791 FENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISI 870 (983)
Q Consensus 791 l~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~ 870 (983)
||++++++++|+++|+++. .|++.+++..+++++.+..+.+. .++ +. .+...+++.+|+.+
T Consensus 157 it~~~~i~~~a~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~--------~~~~~~~~~~~~~i 217 (247)
T d1tzza1 157 LCEYQRTLEVLKTHGWSPS-RCIPHGGHQMSLNIAAGLGLGGN-------ESY---PD--------LFQPYGGFPDGVRV 217 (247)
T ss_dssp HHHHHHHHHHHHHTTCCGG-GBCCSCCBHHHHHHHHHHTCSCE-------EEC---TT--------CSTTTBSCSTTCCC
T ss_pred hhHHHHHHHHHHHcCCCee-ccCCCcHHHHHHHHHHHhcCCCc-------eee---cc--------hhhhhhcCCCCcEE
Confidence 9999999999999999854 44555555555655555544321 000 00 11122455677877
Q ss_pred ec----cCCCCeeeEEecchhhhhhhcc
Q 041113 871 CH----NSCRGFVEASVAKATHILQNLQ 894 (983)
Q Consensus 871 ~~----~P~~pGlGv~~d~a~~~~~~~~ 894 (983)
++ +|++||||+++| +++++++.
T Consensus 218 ~~G~i~~p~~pGlGie~d--~d~l~~~~ 243 (247)
T d1tzza1 218 ENGHITMPDLPGIGFEGK--SDLYKEMK 243 (247)
T ss_dssp BTTEEECCCCSBTSGGGC--HHHHHHHH
T ss_pred ECCEEECCCCCCcceeEC--HHHHHHHH
Confidence 74 999999999999 88888875
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.2e-36 Score=324.88 Aligned_cols=216 Identities=17% Similarity=0.249 Sum_probs=182.9
Q ss_pred CHHHHHHHHHHhhhc-CCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceee
Q 041113 655 SPVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIE 733 (983)
Q Consensus 655 ~~~~~~~~~~~~~~~-G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iE 733 (983)
+|+++++.+++++++ ||++||+|+|. .++++|+++|+++|+++| ++.||||+|++||+++|+++++.|+ +++.|||
T Consensus 47 ~p~~~~~~a~~~~~~~Gf~~~KiKvG~-~~~~~di~~v~avr~~~p-d~~l~vDaN~~~s~~~Ai~~~~~le-~~l~w~E 123 (309)
T d1jdfa1 47 TPDAVVRLAEAAYEKYGFNDFKLKGGV-LAGEEEAESIVALAQRFP-QARITLDPNGAWSLNEAIKIGKYLK-GSLAYAE 123 (309)
T ss_dssp SHHHHHHHHHHHHHHHCCSCEEEECSS-SCHHHHHHHHHHHHHHCT-TSCEEEECTTBBCHHHHHHHHHHTT-TTCSCEE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEECCC-CCHHHHHHHHHHHHHHCC-CCeEEeeccCCCCHHHHHHHHHHHh-hcchhhh
Confidence 789999999999987 99999999997 478999999999999995 7899999999999999999999997 6999999
Q ss_pred cCCC--C----hHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCC
Q 041113 734 EPVQ--N----EEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGK 806 (983)
Q Consensus 734 eP~~--~----~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi 806 (983)
||++ + .+.++++++++++||++||++++..+ +..+++. .+|++++|+ ++||||++++++++|+++|+
T Consensus 124 EPv~~~d~~~~~~~l~~lr~~~~ipIa~gE~~~~~~~-----~~~~i~~~a~di~~~d~-~~GGit~~~kia~lA~~~gi 197 (309)
T d1jdfa1 124 DPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQ-----MGHTLSLQSVDIPLADP-HFWTMQGSVRVAQMCHEFGL 197 (309)
T ss_dssp SCBCCBTTBCHHHHHHHHHHHHCCCEEESSSSSSHHH-----HHHHHHHTCCSEEBCCH-HHHCHHHHHHHHHHHHHHTC
T ss_pred hhcccCcchhhHHHHHHhhcccccceecCcccchhhh-----hhhhhhhccceeeeccc-ccccchHHHHHHHHHHhcCC
Confidence 9997 2 35578899999999999999999763 5555554 468888896 78999999999999999999
Q ss_pred cEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeEE
Q 041113 807 MAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEAS 882 (983)
Q Consensus 807 ~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~ 882 (983)
++++|++.+++|++++++|+++++||... .. ........+.++++.+|+.+++ +|++|||||+
T Consensus 198 ~v~~H~~~~~~i~~aa~~hlaaa~p~~~~------------~~-~~~~~~~~~~~~l~~~~~~i~dG~i~vPd~PGLGve 264 (309)
T d1jdfa1 198 TWGSHSDNHFDISLAMFTHVAAAAPGKIT------------AI-DTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVE 264 (309)
T ss_dssp CCBCCCCSCCHHHHHHHHHHHTTCCSCCC------------CB-CCCHHHHTTTCCSBSSCCCCBTTEEECCCSSBTCCC
T ss_pred CccccCCCCcHHHHHHHHHHHHhCCCCcc------------cc-ccccccchhhHhhcCCCceEECCEEECCCCCCCCeE
Confidence 99888888999999999999999986310 00 0011223456678888998884 9999999999
Q ss_pred ecchhhhhhhcc
Q 041113 883 VAKATHILQNLQ 894 (983)
Q Consensus 883 ~d~a~~~~~~~~ 894 (983)
+| ++.++++-
T Consensus 265 lD--~d~L~ky~ 274 (309)
T d1jdfa1 265 ID--MDQVMKAH 274 (309)
T ss_dssp BC--HHHHHHHH
T ss_pred EC--HHHHHHHH
Confidence 99 88887763
|
| >d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=100.00 E-value=1.4e-34 Score=295.75 Aligned_cols=181 Identities=18% Similarity=0.193 Sum_probs=154.0
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHh
Q 041113 255 SLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIG 334 (983)
Q Consensus 255 ~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiG 334 (983)
.++|+++++.|++.+|+++||+.|.|+ +.+|..+++++ ++|++|+. ++++|+||+ |+|+|||
T Consensus 2 ~i~P~~v~~~l~~~l~~d~ivv~D~G~----~~~~~~~~~~~-~~~~~~~~-----------~~~~g~mG~--glpaaiG 63 (208)
T d1ybha3 2 AIPPQYAIKVLDELTDGKAIISTGVGQ----HQMWAAQFYNY-KKPRQWLS-----------SGGLGAMGF--GLPAAIG 63 (208)
T ss_dssp BCCHHHHHHHHHHHTTTCCEEEECSSH----HHHHHHHSCCC-SSTTSEEC-----------CCSSCCTTC--HHHHHHH
T ss_pred ccCHHHHHHHHHhhCCcCeEEEEcCcH----HHHHHHHhccc-CCCceecc-----------ccccccchh--hhhhHHH
Confidence 589999999999999999999999998 78888888775 66666553 588899999 9999999
Q ss_pred hhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCC---ccc-cccccccCCCCC
Q 041113 335 FAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTE---PRI-LDQYFYTTHNIS 409 (983)
Q Consensus 335 aalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~---~~~-~~~~~~~~~~~d 409 (983)
+++|+ +++|||++|||||+|++|||+|++| |++|+++||+||++|+++++.+...... ... ..........+|
T Consensus 64 a~~A~p~~~Vi~i~GDGsf~m~~~El~Ta~r--~~lpi~iiV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~~~pd 141 (208)
T d1ybha3 64 ASVANPDAIVVDIDGDGSFIMNVQELATIRV--ENLPVKVLLLNNQHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPN 141 (208)
T ss_dssp HHHHCTTSCEEEEEEHHHHHHTTTHHHHHHH--TTCCEEEEEEECSBCHHHHHHHHHHSTTCCCSCBCSCGGGTTSCSSC
T ss_pred HHhcCCCCcEEEEccCCchhhhhhhHHHHHH--hCCCEEEEEEeccccccceehhhhcccccccccccccccccCCCCCC
Confidence 99999 9999999999999999999999999 9999999999999999987642110000 000 011112235689
Q ss_pred HHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 410 IQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 410 f~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
|+++|++||+++++|++++||+++|+++++.++|+||||.|+++++
T Consensus 142 ~~~iA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~id~~~~ 187 (208)
T d1ybha3 142 MLLFAAACGIPAARVTKKADLREAIQTMLDTPGPYLLDVICPHQEH 187 (208)
T ss_dssp HHHHHHHTTCCEEEECBHHHHHHHHHHHHHSSSCEEEEEECCTTCC
T ss_pred HHHhhccCCceEEEcCCHHHHHHHHHHHHhCCCCEEEEEEECCCCc
Confidence 9999999999999999999999999999999999999999998764
|
| >d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=100.00 E-value=1.2e-34 Score=298.92 Aligned_cols=179 Identities=11% Similarity=0.092 Sum_probs=154.0
Q ss_pred ccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHH
Q 041113 252 ADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLST 331 (983)
Q Consensus 252 ~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpa 331 (983)
.+++++|.+++++|++.+|+++++++|+|+ +.+|..+++++ ++|++|+. ++++|+||+ |+|+
T Consensus 2 ~~gpi~p~~v~~~l~~~l~~d~ivv~D~G~----~~~~~~~~~~~-~~p~~~~~-----------~~~~g~mG~--glpa 63 (228)
T d2ez9a3 2 QEGPLQAYQVLRAVNKIAEPDAIYSIDVGD----INLNANRHLKL-TPSNRHIT-----------SNLFATMGV--GIPG 63 (228)
T ss_dssp CSSBCCHHHHHHHHHHHCCTTCEEEECSSH----HHHHHHHHCCC-CTTCEEEC-----------CCSSCCTTC--HHHH
T ss_pred CCCCcCHHHHHHHHHhhCCCCeEEEEcCcH----HHHHHHHHccC-CCCceeee-----------ecccccccc--cchh
Confidence 367899999999999999999999999999 77787777765 66666653 588899999 9999
Q ss_pred HHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccccccccc-CCCCC
Q 041113 332 AIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYT-THNIS 409 (983)
Q Consensus 332 aiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~-~~~~d 409 (983)
||||++|+ +++|||++|||||+|++|||+|++| |++|+++||+||++|++++..+.. ....++.++ ..++|
T Consensus 64 AiGa~la~p~~~Vv~i~GDG~f~m~~~EL~Ta~~--~~lpi~~vV~NN~~yg~i~~~q~~-----~~~~~~~~~~l~~~d 136 (228)
T d2ez9a3 64 AIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQ--YHLPVINVVFTNCQYGWIKDEQED-----TNQNDFIGVEFNDID 136 (228)
T ss_dssp HHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHH--TTCCCEEEEEECSBCHHHHHHHHH-----HCSSCCCSSBCCCCC
T ss_pred hhhhhhhhccceeEeecCCccccccchhhhhhcc--ccCceEEEEeccccchhhhhhhhh-----cccCCcccccccCcc
Confidence 99999999 9999999999999999999999999 999999999999999998764211 112233333 35799
Q ss_pred HHHHHHHcCCceeeeCCHHHHHHHHHh--hhccCCCEEEEEEcCcccc
Q 041113 410 IQNLCLAHGLNHVQVKTKVELEEALSM--SQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 410 f~~la~a~G~~~~~v~~~~eL~~aL~~--a~~~~~p~lIeV~~~~~~~ 455 (983)
|+++|++||+++++|++++||+.+|++ ++++++|+||||.|+++..
T Consensus 137 ~~~iA~a~G~~~~~v~~~~el~~al~~a~al~~~~p~lIev~vd~d~~ 184 (228)
T d2ez9a3 137 FSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQHEPVLIDAVITGDRP 184 (228)
T ss_dssp HHHHHHHTTCEEEEECBGGGHHHHHHHHHHHTTTSCEEEEEECCCCCC
T ss_pred HHhhccccccceEEeCCHHHHHHHHHHHHHHcCCCeEEEEEEECCCCc
Confidence 999999999999999999999999987 4567999999999998653
|
| >d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.9e-34 Score=292.70 Aligned_cols=187 Identities=25% Similarity=0.435 Sum_probs=167.8
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccC---CCc
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC---DLQ 730 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~---~i~ 730 (983)
++|++++++++++ .||++||+|||. .++++|+++|+++|+++ |+++||+|+|++|++++|+++++.|+++ +++
T Consensus 13 gdpde~~~~~~~~--~G~~~~KiKvG~-~~~~~D~~~i~~vr~~~-pd~~L~vDaN~~w~~~~A~~~~~~l~~~~~~~ie 88 (221)
T d1r6wa1 13 GDPDDLILKLADM--PGEKVAKVRVGL-YEAVRDGMVVNLLLEAI-PDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRIA 88 (221)
T ss_dssp SCHHHHHHHHHTC--CSSEEEEEECSS-SCHHHHHHHHHHHHHHC-TTEEEEEECTTCBCHHHHHHHHHTSCTTTGGGEE
T ss_pred CCHHHHHHHHHHc--CCCCeEEEeeCC-CCHHHHHHHHHHHHHHC-CCCeEEEeCCCCCCHHHHHHHHHHHHHhhcCCee
Confidence 5799999998875 699999999997 37899999999999999 5899999999999999999999999874 688
Q ss_pred eeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEe
Q 041113 731 YIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVV 810 (983)
Q Consensus 731 ~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~ 810 (983)
|+|||+++.++++++++.+++||++||++.+..+ ..+...++|++++|++++||++++++++++|+++|+++++
T Consensus 89 ~~E~P~~~~~~~~~l~~~~~ipIa~dEs~~~~~~------~~~~~~~~d~v~ik~~~~GGit~~~kia~~A~~~gl~~~~ 162 (221)
T d1r6wa1 89 FLEEPCKTRDDSRAFARETGIAIAWDESLREPDF------AFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVI 162 (221)
T ss_dssp EEECCBSSHHHHHHHHHHHCCCEEESGGGGSTTC------CCCCCTTEEEEEECHHHHCCHHHHHHHHHHHHHTTCEEEE
T ss_pred eecchhhhhhHHHHHhhcccchhhhccccchhHH------HHHHHhcCcEEEecccccccHHHHHHHHHHHHHcCCcEEE
Confidence 9999998888999999999999999999988653 1223456899999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCC
Q 041113 811 SAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTT 865 (983)
Q Consensus 811 ~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~ 865 (983)
||++||+||+++++|+|+++++ ...+|++|..+|.+|++.
T Consensus 163 ~~~~es~ig~~a~~hlaa~~~~---------------~~~~gldt~~~~~~d~~~ 202 (221)
T d1r6wa1 163 SSSIESSLGLTQLARIAAWLTP---------------DTIPGLDTLDLMQAQQVR 202 (221)
T ss_dssp BCSSCCHHHHHHHHHHHHHHCT---------------TSCCBCTTGGGBSCEESS
T ss_pred cCCcchHHHHHHHHHHHHhCCC---------------CCCCCCCchhHHhhcccc
Confidence 9999999999999999998762 455789999999988764
|
| >d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=3.2e-33 Score=287.98 Aligned_cols=178 Identities=22% Similarity=0.240 Sum_probs=153.6
Q ss_pred cCCCCHHHHHHHHHhhcCC---CceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchH
Q 041113 253 DYSLTEPHVAHELSRALTS---NSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLL 329 (983)
Q Consensus 253 ~~~~~~~~~~~~l~~~l~~---~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~l 329 (983)
..+++|.++++.|++.+++ +++++.|.|+ +.+|..+++.+ ++|++|+ .++++|+||+ ++
T Consensus 8 ~~~i~P~~~~~~L~~~~~~~~~d~ivv~D~G~----~~~~~~~~~~~-~~p~~~i-----------~~~~~g~mG~--~~ 69 (227)
T d1t9ba3 8 GSKIKPQTVIKKLSKVANDTGRHVIVTTGVGQ----HQMWAAQHWTW-RNPHTFI-----------TSGGLGTMGY--GL 69 (227)
T ss_dssp TCCBCHHHHHHHHHHHHHTTCSCEEEEECSSH----HHHHHHHHSCC-CSTTCEE-----------CCCSSCCTTC--HH
T ss_pred CCCcCHHHHHHHHHHhcccCCCCEEEEECCcH----HHHHHHHHcCC-CCCceEe-----------eecccccchh--hH
Confidence 4689999999999999986 8899999998 77888777774 6666655 3688999999 99
Q ss_pred HHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccc-cCCC
Q 041113 330 STAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFY-TTHN 407 (983)
Q Consensus 330 paaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 407 (983)
|+|||+++|+ +++||+|+|||||+|++|||+|++| |++|+++||+||++|+++++.+.. ....++.+ ...+
T Consensus 70 ~aaiGa~lA~p~r~Vv~i~GDGsf~m~~~EL~Ta~r--~~l~i~iiV~nN~~~g~~~~~~~~-----~~~~~~~~~~~~~ 142 (227)
T d1t9ba3 70 PAAIGAQVAKPESLVIDIDGDASFNMTLTELSSAVQ--AGTPVKILILNNEEQGMVTQWQSL-----FYEHRYSHTHQLN 142 (227)
T ss_dssp HHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHH--HTCCCEEEEEECSSCHHHHHHHHH-----HSTTCCCSCCCCC
T ss_pred HHHHHHHhcCCCCeEEEeCCCcccccchHHHHHHhh--cCCceEEEEEecccccchhHHHhh-----hhccccccccCCC
Confidence 9999999999 9999999999999999999999999 999999999999999988653211 11112222 2357
Q ss_pred CCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 408 ISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 408 ~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
+||+++|++||+++++|++.+||+++|+++++.++|+||||.||++++
T Consensus 143 ~d~~~iA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lieV~vd~~~~ 190 (227)
T d1t9ba3 143 PDFIKLAEAMGLKGLRVKKQEELDAKLKEFVSTKGPVLLEVEVDKKVP 190 (227)
T ss_dssp CCHHHHHHHTTCEEEEECSHHHHHHHHHHHHHCSSCEEEEEEBCSSCC
T ss_pred CCHHHHHhhcccceEeeCCHHHHHHHHHHHHHCCCCEEEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999764
|
| >d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.98 E-value=2.9e-33 Score=282.31 Aligned_cols=181 Identities=15% Similarity=0.232 Sum_probs=156.2
Q ss_pred cCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHH
Q 041113 253 DYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTA 332 (983)
Q Consensus 253 ~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaa 332 (983)
..|++|.+++++|++.+|++++++.|.|+ +.+|..+++.. .+|++|+ .++++|+||+ ++|+|
T Consensus 2 ~~pi~P~~v~~~L~~~l~~d~ii~~d~G~----~~~~~~~~l~~-~~p~~~~-----------~~~~~g~mG~--~l~~a 63 (192)
T d1ozha3 2 QFALHPLRIVRAMQDIVNSDVTLTVDMGS----FHIWIARYLYT-FRARQVM-----------ISNGQQTMGV--ALPWA 63 (192)
T ss_dssp CSSBCHHHHHHHHHHHCCTTEEEEECSSH----HHHHHHHTGGG-CCCSEEE-----------CCCTTCCTTC--HHHHH
T ss_pred CCCcCHHHHHHHHHHhCCCCcEEEEcCcH----HHHHHHHhccc-CCCceee-----------cccccccccc--cccch
Confidence 46899999999999999999999999998 66776666554 4555554 3588999999 99999
Q ss_pred Hhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccccccccc-CCCCCH
Q 041113 333 IGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYT-THNISI 410 (983)
Q Consensus 333 iGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~-~~~~df 410 (983)
||+++|+ +++||+++|||+|+|+++||+|+++ |++|+++||+||++|++++..+ ...+.+.+++ ..++||
T Consensus 64 iGa~la~p~~~vi~i~GDG~f~~~~~el~t~~~--~~l~~~iiv~nN~~~~~~~~~~------~~~~~~~~~~~~~~~d~ 135 (192)
T d1ozha3 64 IGAWLVNPERKVVSVSGDGGFLQSSMELETAVR--LKANVLHLIWVDNGYNMVAIQE------EKKYQRLSGVEFGPMDF 135 (192)
T ss_dssp HHHHHHSTTSEEEEEEEHHHHHHHTTHHHHHHH--HTCCEEEEEEECSBCHHHHHHH------HHHHSSCCSCBCCCCCH
T ss_pred hHHHhhcccccceeecccccccchhhhHHHHhh--hcCceeEEEEcCCCcccccccc------ccccCccccCcCCCCCH
Confidence 9999999 9999999999999999999999998 9999999999999999986531 1223333443 357899
Q ss_pred HHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHH
Q 041113 411 QNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFH 459 (983)
Q Consensus 411 ~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~ 459 (983)
.++|++||+++.+|++++||+++|+++++.++|+||||.||+++++...
T Consensus 136 ~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~vd~~~~p~~~ 184 (192)
T d1ozha3 136 KAYAESFGAKGFAVESAEALEPTLRAAMDVDGPAVVAIPVDYRDNPLLM 184 (192)
T ss_dssp HHHHHTTTSEEEECCSGGGHHHHHHHHHHSSSCEEEEEEBCCTTHHHHH
T ss_pred HHHHHHhccccEEeCCHHHHHHHHHHHHHcCCcEEEEEEeCCCCCCccC
Confidence 9999999999999999999999999999999999999999999876544
|
| >d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=99.98 E-value=7.3e-33 Score=286.35 Aligned_cols=175 Identities=12% Similarity=0.098 Sum_probs=152.5
Q ss_pred CCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHH
Q 041113 254 YSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAI 333 (983)
Q Consensus 254 ~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaai 333 (983)
+++++++++++|++.+|+|+|++.|.|+ +..|..+++++ ++|++|+ .++++|+||+ |+|+||
T Consensus 1 Gpl~~~~v~~~l~~~l~~d~iiv~d~G~----~~~~~~~~~~~-~~~~~~~-----------~s~~~g~mG~--~lp~ai 62 (229)
T d2djia3 1 GDLQFYQVYNAINNHADEDAIYSIDVGN----STQTSIRHLHM-TPKNMWR-----------TSPLFATMGI--AIPGGL 62 (229)
T ss_dssp SBCCHHHHHHHHHHHSCTTCEEEECSSH----HHHGGGGTCCC-CTTSEEE-----------CCCSSCCTTC--HHHHHH
T ss_pred CCCCHHHHHHHHHhhCCCCeEEEEcCcH----hHHHHHHHccc-CCCCeEE-----------ecCCcccccc--cchhhh
Confidence 4789999999999999999999999998 77888887775 6666655 3588999999 999999
Q ss_pred hhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccccccccc-CCCCCHH
Q 041113 334 GFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYT-THNISIQ 411 (983)
Q Consensus 334 GaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~-~~~~df~ 411 (983)
||++|+ +++|+|++|||||+|++|||+|+++ +++|+++||+||++|++++.... ....+.+++ .+++||+
T Consensus 63 Ga~~a~p~~~vv~i~GDGsf~m~~~eL~ta~~--~~lpi~iiV~nN~~~~~i~~~~~------~~~~~~~~~~~~~~d~~ 134 (229)
T d2djia3 63 GAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVR--YNMPVINVVFSNTEYAFIKNKYE------DTNKNLFGVDFTDVDYA 134 (229)
T ss_dssp HHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHH--TTCCCEEEEEECSBCTHHHHHHH------HHCSCCCSCBCCCCCHH
T ss_pred hhhhhcccccccccccccccccccchhhhhhc--ccCCceEEEeCCchhhhhhHHHH------hhcCCCCcCcCCCCChh
Confidence 999999 9999999999999999999999999 99999999999999999875311 122333343 3679999
Q ss_pred HHHHHcCCceeeeCCHHHHHHHHHhhhc---cCCCEEEEEEcCccc
Q 041113 412 NLCLAHGLNHVQVKTKVELEEALSMSQH---LGTDRVIEVESCIDA 454 (983)
Q Consensus 412 ~la~a~G~~~~~v~~~~eL~~aL~~a~~---~~~p~lIeV~~~~~~ 454 (983)
++|++||+++++|++.+||+++|++|++ .++|+||||.|+++.
T Consensus 135 ~lA~a~G~~~~~v~~~~el~~al~~A~~~~~~~~p~lIev~v~~~~ 180 (229)
T d2djia3 135 KIAEAQGAKGFTVSRIEDMDRVMAEAVAANKAGHTVVIDCKITQDR 180 (229)
T ss_dssp HHHHHTTSEEEEECBHHHHHHHHHHHHHHHHTTCCEEEEEECCSCC
T ss_pred hhhhccCccEEEEecHHHhHHHHHHHHHhcCCCCeEEEEEEeCCCC
Confidence 9999999999999999999999999864 469999999999865
|
| >d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.98 E-value=6.3e-33 Score=280.72 Aligned_cols=179 Identities=17% Similarity=0.252 Sum_probs=150.7
Q ss_pred cCCCCHHHHHHHHHhhc-----CCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccc
Q 041113 253 DYSLTEPHVAHELSRAL-----TSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDG 327 (983)
Q Consensus 253 ~~~~~~~~~~~~l~~~l-----~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g 327 (983)
+..+++..+++.|++.+ |+++++++|.|. +.+|..+++++ .+|++|+. ++++|+|||
T Consensus 5 ~d~~~~~~v~~~l~~~~~~~~~p~d~iiv~d~G~----~~~~~~~~~~~-~~p~~~~~-----------~~~~g~mG~-- 66 (198)
T d2ihta3 5 EDGMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGF----FRHYGVLFARA-DQPFGFLT-----------SAGCSSFGY-- 66 (198)
T ss_dssp SSSBCHHHHHHHHHHHHHHHSCTTCCEEEECSSH----HHHHHHHHCCC-CSTTSEEC-----------CSSSCCTTC--
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCEEEEEcCcH----HHHHHHHHcCc-CCCCeEEe-----------cCCcccchh--
Confidence 34678888888887755 678999999998 67777666664 67766654 578899999
Q ss_pred hHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccccc---ccc
Q 041113 328 LLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQ---YFY 403 (983)
Q Consensus 328 ~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~---~~~ 403 (983)
++|+|||+++|+ +++|||++|||||+|+++||+|++| +++|+++||+||++|++++..+. ..+.. ...
T Consensus 67 ~lp~aiGa~~a~p~~~Vv~i~GDGsf~~~~~el~t~~~--~~lpi~ivV~NN~~~g~i~~~q~------~~~~~~~~~~~ 138 (198)
T d2ihta3 67 GIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLETIAR--LNLPIVTVVVNNDTNGLIELYQN------IGHHRSHDPAV 138 (198)
T ss_dssp HHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHHHHHH--HTCCCEEEEEECSBCHHHHHHHH------HHHSSCCGGGT
T ss_pred HHHHHHHHhhhhcccceEeecccccccccchhhhhhhh--hhhhhhHHHhhccccceEeeeec------ccccccccccc
Confidence 999999999999 9999999999999999999999999 99999999999999999875311 01111 111
Q ss_pred cCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchH
Q 041113 404 TTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANAT 457 (983)
Q Consensus 404 ~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~ 457 (983)
...++||.++|++||+++++|++++||+++|+++++.++|+||||.|+++..+.
T Consensus 139 ~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~vd~d~~p~ 192 (198)
T d2ihta3 139 KFGGVDFVALAEANGVDATRATNREELLAALRKGAELGRPFLIEVPVNYDFQPG 192 (198)
T ss_dssp BCCCCCHHHHHHHTTCEEEECCSHHHHHHHHHHHHTSSSCEEEEEEBCCCCCGG
T ss_pred ccCCcchhhhccccCceEEEeCCHHHHHHHHHHHHhCCCCEEEEEEcCCCCCCC
Confidence 225799999999999999999999999999999999999999999999976554
|
| >d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=99.97 E-value=6.1e-32 Score=275.08 Aligned_cols=184 Identities=20% Similarity=0.211 Sum_probs=152.6
Q ss_pred CCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHH
Q 041113 254 YSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAI 333 (983)
Q Consensus 254 ~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaai 333 (983)
.|+++.+++++|++.++++++|++|.|+ +.++.. .+.+ +++++|+ .++++|+||| ++|+||
T Consensus 1 ~Pl~~~~~~~~l~~~l~~~~ivv~d~G~----~~~~~~-~~~~-~~~~~~~-----------~~~~~g~mG~--~l~aAi 61 (204)
T d1zpda3 1 APLVNAEIARQVEALLTPNTTVIAETGD----SWFNAQ-RMKL-PNGARVE-----------YEMQWGHIGW--SVPAAF 61 (204)
T ss_dssp SBCCHHHHHHHHHHTCCTTEEEEECSSH----HHHHHH-TCCC-CTTCEEE-----------ECTTTCCTTT--HHHHHH
T ss_pred CCCCHHHHHHHHHhhCCCCCEEEECchH----hHHHHH-HhCC-CCCCeEE-----------cCCCCcccch--hhHHHH
Confidence 3799999999999999999999999998 333332 2232 3444433 4688899999 999999
Q ss_pred hhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHH
Q 041113 334 GFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQN 412 (983)
Q Consensus 334 GaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~ 412 (983)
|+++|+ +++|||++|||||+|++|||+|+++ |++|+++||+||++|++++..+. ..+....++||.+
T Consensus 62 Ga~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~--~~lpi~iiV~NN~~~g~~~~~~~----------~~~~~~~~~d~~~ 129 (204)
T d1zpda3 62 GYAVGAPERRNILMVGDGSFQLTAQEVAQMVR--LKLPVIIFLINNYGYTIEVMIHD----------GPYNNIKNWDYAG 129 (204)
T ss_dssp HHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHH--TTCCCEEEEEECSSCHHHHTTSC----------CGGGCCCCCCHHH
T ss_pred HHHHhCCCCceeccccccceeeeecccchhhh--cccccceEEEecccccccceecc----------ccccccchhhhhh
Confidence 999999 9999999999999999999999999 99999999999999999876432 1122345789999
Q ss_pred HHHHc---------CCceeeeCCHHHHHHHHHhhh-ccCCCEEEEEEcCcccchHHHHHHHHHHHH
Q 041113 413 LCLAH---------GLNHVQVKTKVELEEALSMSQ-HLGTDRVIEVESCIDANATFHSMLRKFARQ 468 (983)
Q Consensus 413 la~a~---------G~~~~~v~~~~eL~~aL~~a~-~~~~p~lIeV~~~~~~~~~~~~~~~~~~~~ 468 (983)
++++| |+++++|++++||.++|++++ +.++|+||||.+++++....+..+.+.+..
T Consensus 130 ~~~~~~~~~~a~~~g~~~~~v~~~~el~~al~~al~~~~gp~lieV~vd~~~~~~p~~~~g~~~~~ 195 (204)
T d1zpda3 130 LMEVFNGNGGYDSGAAKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAA 195 (204)
T ss_dssp HHHHHHCTTSSSCCCCEEEEESBHHHHHHHHHHHHHCCSSCEEEEEECCTTCCCHHHHHHHHHHHH
T ss_pred hhhhcCcchhhhccCccEEEecCHHHHHHHHHHHHHcCCCcEEEEEEECcccCCcccchhccHHHH
Confidence 98865 788999999999999999987 478999999999999987777666554443
|
| >d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=99.97 E-value=3.3e-32 Score=275.50 Aligned_cols=188 Identities=19% Similarity=0.197 Sum_probs=158.2
Q ss_pred cCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHH
Q 041113 253 DYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTA 332 (983)
Q Consensus 253 ~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaa 332 (983)
++++++.+++++|++.+|++++|+.|.|+ +.+|... +.+ +.+++|+ .+.++|+||+ ++|+|
T Consensus 2 ~g~l~~~~~~~~l~~~l~~d~ivv~d~G~----~~~~~~~-~~~-~~~~~~~-----------~~~~~g~mG~--~l~~a 62 (196)
T d1ovma3 2 DGSLTQENFWRTLQTFIRPGDIILADQGT----SAFGAID-LRL-PADVNFI-----------VQPLWGSIGY--TLAAA 62 (196)
T ss_dssp CSBCCHHHHHHHHHHHCCTTCEEEECTTH----HHHHHTT-CCC-CSSCEEE-----------CCTTTCCTTH--HHHHH
T ss_pred CCccCHHHHHHHHHhhCCCCCEEEEcCCH----hHHHHHH-hcc-CCCCeEE-----------eCCCCccccc--cchhh
Confidence 46899999999999999999999999998 4444332 222 3333332 3578899999 99999
Q ss_pred Hhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHH
Q 041113 333 IGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQ 411 (983)
Q Consensus 333 iGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~ 411 (983)
+|+++|+ +++|||++|||||+|++|||+|+++ +++|+++||+||++|++++..+.. +..+.....+||.
T Consensus 63 iGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~--~~l~i~iiV~nN~~~~~~~~~~~~--------~~~~~~~~~~~~~ 132 (196)
T d1ovma3 63 FGAQTACPNRRVIVLTGDGAAQLTIQELGSMLR--DKQHPIILVLNNEGYTVERAIHGA--------EQRYNDIALWNWT 132 (196)
T ss_dssp HHHHHHCTTSCEEEEEEHHHHHHHTTHHHHHHH--TTCCCEEEEEESSSCHHHHHHSCT--------TCGGGCCCCCCGG
T ss_pred HHHHHhhhccceecccccccceeeccccccccc--ccccceEEEEecCccccchhhhcc--------ccccccccccccc
Confidence 9999999 9999999999999999999999999 999999999999999998654211 1112233568999
Q ss_pred HHHHHcCC----ceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHHHHHHHHHH
Q 041113 412 NLCLAHGL----NHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQS 469 (983)
Q Consensus 412 ~la~a~G~----~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~~~~~~~~~ 469 (983)
+++++||+ ++++|++.+||+++|+++++.++|+||||++++++.++.++++.+.++..
T Consensus 133 ~~a~~~g~~~~~~~~~v~~~~el~~al~~a~~~~gp~lIev~~~~~~~~p~~~~~~~~~~~~ 194 (196)
T d1ovma3 133 HIPQALSLDPQSECWRVSEAEQLADVLEKVAHHERLSLIEVMLPKADIPPLLGALTKALEAC 194 (196)
T ss_dssp GSTTTSCSSCCEEEEEECBHHHHHHHHHHHTTCSSEEEEEEECCTTCCCHHHHHHHHHHHHH
T ss_pred hhHHhcCccccceeEEEecHHHHHHHHHHHHHCCCcEEEEEEeChHhCChhHHHHHHHHHhh
Confidence 99999986 67899999999999999999999999999999999999998888777654
|
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.6e-32 Score=278.63 Aligned_cols=197 Identities=21% Similarity=0.300 Sum_probs=169.5
Q ss_pred ceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHH
Q 041113 642 TSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFG 721 (983)
Q Consensus 642 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~ 721 (983)
.+|+.+.++ +.++|+++.+++++++++||++||+|+|. +.|+++++++|+++ +++.||+|+|++||+++|++++
T Consensus 4 ~~~~~~~tv-~~~tpe~~~~~a~~~~~~G~~~~KiKvg~----~~d~~~i~~ir~~~-~d~~l~vDaN~~~s~~~A~~~~ 77 (208)
T d1jpdx1 4 ETVITAQTV-VIGTPDQMANSASTLWQAGAKLLKVKLDN----HLISERMVAIRTAV-PDATLIVDANESWRAEGLAARC 77 (208)
T ss_dssp SEEEBCEEE-CSCCHHHHHHHHHHHHHTTCSEEEEECCS----SCHHHHHHHHHHHC-TTSEEEEECTTCCCSTTHHHHH
T ss_pred CceeeeeEc-CCCCHHHHHHHHHHHHHCCCCEEEEECCC----CcHHHHHHHHHHhc-cccEEEEecccccchhHHHHHH
Confidence 457777766 46799999999999999999999999986 35899999999999 4899999999999999999999
Q ss_pred hhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHH
Q 041113 722 FLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIAR 799 (983)
Q Consensus 722 ~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~ 799 (983)
+.|+++++.|||||++ +.+.+++++ ..+||++||++.+..+ +..+. ..+|++++|++++||+++++++++
T Consensus 78 ~~l~~~~l~~iEeP~~~~d~~~~~~l~--~~~pi~~~E~~~~~~~-----~~~l~-~~~d~~~~d~~~~GGi~~~~~~a~ 149 (208)
T d1jpdx1 78 QLLADLGVAMLEQPLPAQDDAALENFI--HPLPICADESCHTRSN-----LKALK-GRYEMVNIKLDKTGGLTEALALAT 149 (208)
T ss_dssp HHHHHTTCCEEECCSCTTSCGGGGSSC--CSSCEEESTTCSSGGG-----HHHHB-TTBSEEEECHHHHTSHHHHHHHHH
T ss_pred HHHHhccccccCccCCccCHHHHHhhh--cccceecCCCcCCHHH-----HHHHh-hccCEEEeCCcccCCHHHHHHHHH
Confidence 9999999999999999 566666664 4689999999999864 44553 458999999999999999999999
Q ss_pred HHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceee
Q 041113 800 WAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISIC 871 (983)
Q Consensus 800 ~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~ 871 (983)
+|+++|+++++|+++++++++++++|+++.+.. .++++..|+.+|+ .+|++++
T Consensus 150 ~a~~~g~~~~~~~~~~~~i~~~a~~~~a~~~~~------------------~dld~~~~~~~di-~~~l~i~ 202 (208)
T d1jpdx1 150 EARAQGFSLMLGCMLCTSRAISAALPLVPQVSF------------------ADLDGPTWLAVDV-EPALQFT 202 (208)
T ss_dssp HHHHTTCEEEECCCSCCHHHHHHHGGGGGGCSE------------------ECCCGGGGBSSCC-SSCCEEE
T ss_pred HHHHcCCeeeecCCchhHHHHHHHHHHhccCCC------------------ccccchhhhhhcC-CCCCeEe
Confidence 999999999999999999999999998765431 1245666777775 6788775
|
| >d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=99.97 E-value=8.4e-32 Score=269.58 Aligned_cols=173 Identities=16% Similarity=0.145 Sum_probs=143.5
Q ss_pred ccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHH
Q 041113 252 ADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLST 331 (983)
Q Consensus 252 ~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpa 331 (983)
+.++++|.+++++|++.+|++++++.|.|+ +..|..+++.+ +.|++| + .+++|+||+ ++|+
T Consensus 8 ~~~~i~p~~~~~~l~~~l~~d~ivv~d~G~----~~~~~~~~~~~-~~~~~~----------~--~~~~g~mG~--~~p~ 68 (183)
T d1q6za3 8 DAGRLHPETVFDTLNDMAPENAIYLNESTS----TTAQMWQRLNM-RNPGSY----------Y--FCAAGGLGF--ALPA 68 (183)
T ss_dssp CSSSBCHHHHHHHHHHHSCTTCEEEEECTT----SHHHHHHHCCC-CSSSCE----------E--ECTTCCTTS--HHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCcEEEEcCCc----hHHHHHHHHhh-cccccc----------c--cccCCCccc--chhH
Confidence 346899999999999999999999999998 34444333332 333332 2 356799999 9999
Q ss_pred HHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccc-cCCCCC
Q 041113 332 AIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFY-TTHNIS 409 (983)
Q Consensus 332 aiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~-~~~~~d 409 (983)
|||+++|+ +++|||++|||+|+|++|||+|+++ |++|+++||+||++|++++..+.. ...++..+ ..+++|
T Consensus 69 AiGa~la~p~~~vv~i~GDG~f~~~~~el~ta~~--~~lpv~~iV~nN~~~g~~~~~~~~-----~~~~~~~~~~~~~~d 141 (183)
T d1q6za3 69 AIGVQLAEPERQVIAVIGDGSANYSISALWTAAQ--YNIPTIFVIMNNGTYGALRWFAGV-----LEAENVPGLDVPGID 141 (183)
T ss_dssp HHHHHHHCTTSCEEEEEEHHHHTTTGGGHHHHHH--HTCCCEEEEEECSBCHHHHHHHHH-----HTCCSCCSCBCCCCC
T ss_pred HHhhhhhccccceEEeccccccccccHHHHHHHH--hCCCEEEEEEeccccchhhhhhhc-----ccccCcccccCCCcc
Confidence 99999999 9999999999999999999999999 999999999999999998753211 01111112 236899
Q ss_pred HHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEc
Q 041113 410 IQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVES 450 (983)
Q Consensus 410 f~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~ 450 (983)
|.++|++||+++++|++++||+++|+++++.++|+||||.|
T Consensus 142 ~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~lieV~T 182 (183)
T d1q6za3 142 FRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVST 182 (183)
T ss_dssp HHHHHHHHTCEEEEESSHHHHHHHHHHHHTCSSCEEEEEEB
T ss_pred HHHHHHHcCCEEEEECCHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 99999999999999999999999999999999999999986
|
| >d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.7e-30 Score=263.31 Aligned_cols=183 Identities=15% Similarity=0.101 Sum_probs=148.8
Q ss_pred cCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHH
Q 041113 253 DYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTA 332 (983)
Q Consensus 253 ~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaa 332 (983)
..|+++.++++.|++.+|++++|++|.|. +.+|...+ .+ ..+ ..+..+.++|+||+ ++|++
T Consensus 2 ~~Pl~~~~~~~~l~~~l~~~~ivv~d~G~----~~~~~~~~-~~-~~~-----------~~~~~~~~~g~mG~--~l~~a 62 (196)
T d1pvda3 2 STPLKQEWMWNQLGNFLQEGDVVIAETGT----SAFGINQT-TF-PNN-----------TYGISQVLWGSIGF--TTGAT 62 (196)
T ss_dssp TSBCCHHHHHHHHTTTCCTTCEEEECTTH----HHHHGGGC-CC-CSS-----------CEEECCTTTCCTTH--HHHHH
T ss_pred cCCcCHHHHHHHHHhhCCCCCEEEECCcH----hHHHHHHh-hc-cCC-----------CEEEccCCcCcccc--cccch
Confidence 35899999999999999999999999998 55565432 21 222 22224678899999 99999
Q ss_pred Hhhhhc----c-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCC
Q 041113 333 IGFAVG----C-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHN 407 (983)
Q Consensus 333 iGaalA----~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (983)
+|+++| + +++||||+|||||+|++|||+|++| |++|+++||+||++|++++..+... ..+....+
T Consensus 63 iG~alaa~~~~p~~~Vv~i~GDGsf~m~~~eL~ta~~--~~l~i~~iV~nN~~y~~~~~~~~~~--------~~~~~~~~ 132 (196)
T d1pvda3 63 LGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIR--WGLKPYLFVLNNDGYTIEKLIHGPK--------AQYNEIQG 132 (196)
T ss_dssp HHHHHHHHHHCTTCCEEEEEEHHHHHHHGGGHHHHHH--TTCCCEEEEEESSSCHHHHTTSCTT--------CGGGCCCC
T ss_pred hHHHHHHHhcCCCCceeeccCcccccccccccccccc--ccccceEEEEeCCccceeEeeccCc--------cccccCCC
Confidence 999998 3 7999999999999999999999999 9999999999999999987643211 11223357
Q ss_pred CCHHHHHHHcCCce---eeeCCHHHHHHHHHhhh--ccCCCEEEEEEcCcccchHHHHHHHH
Q 041113 408 ISIQNLCLAHGLNH---VQVKTKVELEEALSMSQ--HLGTDRVIEVESCIDANATFHSMLRK 464 (983)
Q Consensus 408 ~df~~la~a~G~~~---~~v~~~~eL~~aL~~a~--~~~~p~lIeV~~~~~~~~~~~~~~~~ 464 (983)
+||.++|++||+++ .+|++.+||+++|+++. +.++|+||||++++.+.++.+.++.+
T Consensus 133 ~d~~~la~a~G~~~~~~~~v~~~~el~~al~~~~~~~~~~~~lIeV~i~~~d~p~~l~~~~~ 194 (196)
T d1pvda3 133 WDHLSLLPTFGAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIEIMLPVFDAPQNLVKQAK 194 (196)
T ss_dssp CCGGGHHHHTTCSSEEEEEECBHHHHHHHHTCTTTTSCSSEEEEEEECCTTCCCHHHHHHHH
T ss_pred CCHHHHHHHhCCCCceEEEecCHHHHHHHHHHHHHhCCCCcEEEEEECCCccCcHHHHHhcc
Confidence 89999999999764 67999999999998654 45789999999999998887766654
|
| >d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=99.97 E-value=2.7e-30 Score=258.57 Aligned_cols=176 Identities=16% Similarity=0.072 Sum_probs=143.4
Q ss_pred cCCCCHHHHHHHHHhhcCC--CceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHH
Q 041113 253 DYSLTEPHVAHELSRALTS--NSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLS 330 (983)
Q Consensus 253 ~~~~~~~~~~~~l~~~l~~--~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lp 330 (983)
.+.+++..+++.|++.+++ |.+++.|.|. ...|...++.+ .+|++|+ .++++|+||+ ++|
T Consensus 3 ~g~~~~~~~~~~l~~~~~~~~D~iiv~dgg~----~~~~~~~~~~~-~~p~~~~-----------~~~~~g~mG~--~l~ 64 (183)
T d2ji7a3 3 SGMMNYSNSLGVVRDFMLANPDISLVNEGAN----ALDNTRMIVDM-LKPRKRL-----------DSGTWGVMGI--GMG 64 (183)
T ss_dssp TTCBCHHHHHHHHHHHHHHCCSSEEEEESSH----HHHHHHHHSCC-CSTTCEE-----------ECTTTTCTTC--HHH
T ss_pred CCcCCHHHHHHHHHHHHhcCCCEEEEECchh----HHHHHHHHhcc-CCCCcEE-----------ecCCcccccc--ccc
Confidence 3679999999999998864 6788888777 33454444443 5666555 3578899999 999
Q ss_pred HHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccc-cCCCCC
Q 041113 331 TAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFY-TTHNIS 409 (983)
Q Consensus 331 aaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~-~~~~~d 409 (983)
+|+|++++.+++|++|+|||||+|++|||+|+++ |++|+++||+||++|...++.. ....++.. ..+++|
T Consensus 65 ~aig~~a~~~~~vv~i~GDGsf~~~~~el~ta~~--~~l~i~iiV~NN~g~~~~~q~~-------~~~~~~~~~~~~~~d 135 (183)
T d2ji7a3 65 YCVAAAAVTGKPVIAVEGDSAFGFSGMELETICR--YNLPVTVIIMNNGGIYKGNEAD-------PQPGVISCTRLTRGR 135 (183)
T ss_dssp HHHHHHHHHCSCEEEEEEHHHHHTTGGGHHHHHH--TTCCEEEEEEECSBSSCSCCCC-------SBTTBCCTTBCCCCC
T ss_pred hhhhhhcCCcceEEEEEcCcchhhchhhhhhhhh--ccccchhhhhhhhhhhhhhhcc-------ccccccccccccccc
Confidence 9999885449999999999999999999999999 9999999999999886654321 11112222 236799
Q ss_pred HHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 410 IQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 410 f~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
|+++|++||+++++|++++||+++|+++++.++|+||||.||++.+
T Consensus 136 ~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIev~idp~~~ 181 (183)
T d2ji7a3 136 YDMMMEAFGGKGYVANTPAELKAALEEAVASGKPCLINAMIDPDAG 181 (183)
T ss_dssp HHHHHHHTTCEEEEECSHHHHHHHHHHHHHHTSCEEEEEEBCTTSC
T ss_pred hhhhhhhcCCcEEEeCCHHHHHHHHHHHHhCCCcEEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999865
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=99.92 E-value=1.1e-25 Score=233.80 Aligned_cols=181 Identities=14% Similarity=0.126 Sum_probs=144.6
Q ss_pred ceeEEEEeecCCCCHHHHHHHHHH----hhhcCCCEEEEeccCCCChHHHH-------HHHHHHHHHcCCCcEEEEE---
Q 041113 642 TSIKICALIDSNKSPVEVASIATT----LVEEGFTAIKLKVARRADPIKDA-------EVIQEVRKKVGHRIELRVD--- 707 (983)
Q Consensus 642 ~~i~~~~~~~~~~~~~~~~~~~~~----~~~~G~~~~KiKig~~~~~~~d~-------~~v~~vr~~~g~~~~l~vD--- 707 (983)
.+||+|++.+.. .+..+.+.+.+ +...||+.+|+|+|. +.+.|. ++|+++|+..|+++.|++|
T Consensus 5 ~~VPiy~~~G~~-~~~~~d~~i~k~~~~~~~~~~~~vK~K~G~--~~~~~~e~~~~i~~rI~~~r~~~g~~~~l~iD~~~ 81 (253)
T d1kcza1 5 NAVPVFAQSGDD-RYDNVDKMIIKEADVLPHALINNVEEKLGL--KGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDVYG 81 (253)
T ss_dssp CCCCEECCCTTC-TTHHHHHHHHTTCSEEEECCCCCCCCCCCT--TSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTT
T ss_pred CCCCeeeccCCc-ccccHHHHHHHHhhhhhhhhhhhhchhcCC--CccccHHHHHHHHHHHHHHhcccccCceeeehhhh
Confidence 578898876432 23222223333 334689999999996 455544 4888888889999999999
Q ss_pred ---cCCCCCHHHHHHHHhhccc----CCCceeecCCC--C----hHHHHHHHhh-----cCCcEEeCCCccCcCCChHHH
Q 041113 708 ---ANRNWTYQEALEFGFLIKD----CDLQYIEEPVQ--N----EEDIIKYCEE-----SGLPVALDETIDKFQKDPLNM 769 (983)
Q Consensus 708 ---aN~~~~~~~a~~~~~~l~~----~~i~~iEeP~~--~----~~~~~~l~~~-----~~ipIa~dEs~~~~~~~~~~~ 769 (983)
+|++||+++|+++++.|++ |.+ |||||++ | .+.+++|+++ +++||++||++++..|
T Consensus 82 ~~~~n~~~~~~eai~~~~~L~~~~~~y~i-~iEqP~~~~d~~~~~e~~a~lr~~~~~~g~~vpI~~DE~~~~~~d----- 155 (253)
T d1kcza1 82 TIGAAFDVDIKAMADYIQTLAEAAKPFHL-RIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVED----- 155 (253)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTSCE-EEECSBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTTCCSHHH-----
T ss_pred ccCccCCCCHHHHHHHHHHHHHhcCCCCc-eEecCCCCccHhhHHHHHHHHHHHHhccCCccceeccccccCHHH-----
Confidence 6779999999999888865 444 8999998 4 3456777755 6799999999999753
Q ss_pred HHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCC-CCchHHHHHHHHHHHhhch
Q 041113 770 LEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSA-AFESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 770 ~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~-~~es~ig~~a~~~laa~~~ 831 (983)
+..+++.+ +|++++|++++||++++++++++|+++|++++++| +.||+++.++.+|+|.+..
T Consensus 156 ~~~~i~~~a~d~v~iK~~k~GGi~~al~~~~~a~~~Gi~~~vg~~~~Et~~s~~a~~hla~A~~ 219 (253)
T d1kcza1 156 VKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIGMACG 219 (253)
T ss_dssp HHHHHHTTCSSEEEECTGGGSSTHHHHHHHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCcCeeeccccccCCHHHHHHHHHHHHHcCCcEEEcCccCCcchHHHHHHHHHHhcC
Confidence 56666554 79999999999999999999999999999999986 8899999999999998864
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=99.91 E-value=5.9e-25 Score=227.29 Aligned_cols=184 Identities=16% Similarity=0.188 Sum_probs=147.0
Q ss_pred cceeEEEEeecCCCCHH---HHH-HHHHHhhhcCCCEEEEeccCCC-----ChHHHHHHHHHHHHHcCCCcEEEEEcCC-
Q 041113 641 STSIKICALIDSNKSPV---EVA-SIATTLVEEGFTAIKLKVARRA-----DPIKDAEVIQEVRKKVGHRIELRVDANR- 710 (983)
Q Consensus 641 ~~~i~~~~~~~~~~~~~---~~~-~~~~~~~~~G~~~~KiKig~~~-----~~~~d~~~v~~vr~~~g~~~~l~vDaN~- 710 (983)
..+||+|++.+. ..++ .++ +.+..+...+|+.+|.|+|... .++.++++|+++|+..|+++.|++|+|+
T Consensus 4 ~~~VP~~g~~g~-~~~~~~e~mI~~~a~~~~~~~~~~lk~kvG~~g~~~~e~~~~~~~rI~~~r~~~G~~~~i~iD~~~~ 82 (251)
T d1kkoa1 4 PEAIPLFGQSGD-DRYIAVDKMILKGVDVLPHALINNVEEKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGT 82 (251)
T ss_dssp CCCCCEECCCTT-CTTHHHHHHHHTTCSEEEETTCCCCCCCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTH
T ss_pred CCCcccccccCC-CcccchHHHHHhhhHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhCcCCCcceeeccccc
Confidence 478999987743 3333 222 2233333468999999999631 1445678999999999999999999766
Q ss_pred -----CCCHHHHHHHHhhcccC----CCceeecCCC------ChHHHHHHHhh-----cCCcEEeCCCccCcCCChHHHH
Q 041113 711 -----NWTYQEALEFGFLIKDC----DLQYIEEPVQ------NEEDIIKYCEE-----SGLPVALDETIDKFQKDPLNML 770 (983)
Q Consensus 711 -----~~~~~~a~~~~~~l~~~----~i~~iEeP~~------~~~~~~~l~~~-----~~ipIa~dEs~~~~~~~~~~~~ 770 (983)
+|+.++|+++++.|++. .+ |||||++ |++++++++++ +++||++||++.+..+ +
T Consensus 83 ~~~~~~~~~~~ai~~l~~L~~~~~~~~l-~IEqP~~~~~~~~d~~gl~~l~~~l~~~g~~vpI~~DE~~~t~~d-----~ 156 (251)
T d1kkoa1 83 IGLIFDMDPVRCAEYIASLEKEAQGLPL-YIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTYQD-----I 156 (251)
T ss_dssp HHHHTTTCHHHHHHHHHHTGGGGTTSCE-EEECCCCCSSHHHHHHHHHHHHHHHHHHTCCCEEEECTTCCSHHH-----H
T ss_pred cccccCCCHHHHHHHHHHHHHhcCCCce-eecCCcccccchHHHHHHHHHHHHHhccCCCceEeccceeCCHHH-----H
Confidence 89999999999999754 44 9999995 35667777654 5799999999999753 6
Q ss_pred HhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCC-CCchHHHHHHHHHHHhhch
Q 041113 771 EKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSA-AFESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 771 ~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~-~~es~ig~~a~~~laa~~~ 831 (983)
..+++. .+|++++|++++|||+++++++++|+++|++++++| +.||+++.++.+|+|.+..
T Consensus 157 ~~~i~~~a~d~v~iK~~k~GGi~~a~~~~~~A~~~Gi~~~~g~~~~ET~~~~~a~~hla~a~~ 219 (251)
T d1kkoa1 157 VDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVHVALAAR 219 (251)
T ss_dssp HHHHHTTCCSEEEECGGGGSSTHHHHHHHHHHHHHTCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCccceeccccccCCHHHHHHHHHHHHHCCCeEEEeCcccCcchHHHHHHHHHHhcC
Confidence 666654 479999999999999999999999999999999895 8899999999999998753
|
| >d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.91 E-value=5.7e-25 Score=219.03 Aligned_cols=158 Identities=13% Similarity=0.137 Sum_probs=133.5
Q ss_pred cchhhHHHHHHHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhc
Q 041113 71 YTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHAL 150 (983)
Q Consensus 71 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~ 150 (983)
|+++.|++++++|.+||||||++|+|+.. +.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..+
T Consensus 4 P~~~~i~~~~~~L~~AkrPvii~G~G~~~-a~~~l~~lae~~~~Pv~tt~~-~------~g~~~~~h~~~--~G~~G~~g 73 (179)
T d1ybha1 4 PEDSHLEQIVRLISESKKPVLYVGGGCLN-SSDELGRFVELTGIPVASTLM-G------LGSYPCDDELS--LHMLGMHG 73 (179)
T ss_dssp CCHHHHHHHHHHHHHCSSEEEEECGGGTT-CHHHHHHHHHHHCCCEEECTT-T------TTSSCTTSTTE--EEECSTTS
T ss_pred cCHHHHHHHHHHHHhCCCeEEEECHHHHH-HHHHHHHHHhhhcccceeccc-c------cCCCccccccc--cccCCCcC
Confidence 67889999999999999999999999864 357899999999999999998 6 79999999996 78888888
Q ss_pred cCccccccCCCCEEEEeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC----
Q 041113 151 LSESVKDWIQFDVIIQIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP---- 225 (983)
Q Consensus 151 ~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~---- 225 (983)
+..++..+++|||||++|+++++..+..+ ..+. ..++||||+|+.++++++++++.|++|++.++++|.+.+..
T Consensus 74 ~~~~~~~~~~aDlil~lG~~l~~~~~~~~-~~~~~~~kiI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~ 152 (179)
T d1ybha1 74 TVYANYAVEHSDLLLAFGVRFDDRVTGKL-EAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEE 152 (179)
T ss_dssp CHHHHHHHHHCSEEEEESCCCCHHHHSSG-GGTTTTSEEEEEESCTTTTTSSSCCSEEEESCHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHhhhhhhhccccccccccccc-cccCCCCeEEEEeCcccccccccCCCceEEeccHHHHHHHHHHHHhhhhc
Confidence 88888888999999999999976554433 3343 34799999999999999999999999999999999887632
Q ss_pred --CCChhHHHHHHHHH
Q 041113 226 --HRSSKWCSFLRALD 239 (983)
Q Consensus 226 --~~~~~w~~~~~~~~ 239 (983)
.....|.+++.+.+
T Consensus 153 ~~~~~~~W~~~i~~~k 168 (179)
T d1ybha1 153 LKLDFGVWRNELNVQK 168 (179)
T ss_dssp HCCCCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHH
Confidence 23456777665544
|
| >d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=99.90 E-value=1.5e-24 Score=215.80 Aligned_cols=164 Identities=15% Similarity=0.095 Sum_probs=136.8
Q ss_pred ccchhhHHHHHHHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhh
Q 041113 70 SYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHA 149 (983)
Q Consensus 70 ~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~ 149 (983)
.|+++.|++++++|.+||||+||+|+|+.. +.+++.+|||++|+||++|++ | ||+||++||+| +|.+|..
T Consensus 5 ~P~~~~i~~~~~~l~~Ak~Pvii~G~g~~~-a~~~l~~lae~l~~Pv~~t~~-~------~g~ip~~hp~~--~G~~g~~ 74 (177)
T d2djia1 5 APAAQDIDAAVELLNNSKRPVIYAGIGTMG-HGPAVQELARKIKAPVITTGK-N------FETFEWDFEAL--TGSTYRV 74 (177)
T ss_dssp CCCHHHHHHHHHHHHTCSSEEEEECGGGTT-CHHHHHHHHHHHTCCEEECTT-C------GGGSCTTCTTB--CCCSSSS
T ss_pred CcCHHHHHHHHHHHHhCCCEEEEECcChhh-HHHHHHHhhhccceEEEeccc-c------ccccccccccc--ccccccc
Confidence 467889999999999999999999998764 346899999999999999997 6 79999999996 7888888
Q ss_pred ccCccccccCCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCCh
Q 041113 150 LLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSS 229 (983)
Q Consensus 150 ~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~ 229 (983)
++..+++.+++|||||+||+++....+.++ ..+..++||||+|+.++++++++++.|++|++.+|++|++.+......
T Consensus 75 ~~~~~~~~l~~aDlvi~lG~~~~~~~~~~~--~~~~~kiI~Id~d~~~i~~~~~~d~~i~gD~~~~L~~L~~~l~~~~~~ 152 (177)
T d2djia1 75 GWKPANETILEADTVLFAGSNFPFSEVEGT--FRNVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVDAVEES 152 (177)
T ss_dssp SCHHHHHHHHHCSEEEEESCCCTTTTTTTT--TTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHSCCCCCC
T ss_pred cChhhhhhhhccCceEEeeccCCCccceec--cccccchheEEecccccCCcccCceEEEeCHHHHHHHHHHhhhhccCc
Confidence 887888889999999999999864443322 123347999999999999999999999999999999999998776666
Q ss_pred hHHHHHHHHHHHHHHH
Q 041113 230 KWCSFLRALDMMVASE 245 (983)
Q Consensus 230 ~w~~~~~~~~~~~~~~ 245 (983)
.|.....+....|.+.
T Consensus 153 ~~~~~~~~~~~~w~e~ 168 (177)
T d2djia1 153 AWWTANLKNIANWREY 168 (177)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7766555445555443
|
| >d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=99.90 E-value=1.1e-24 Score=217.07 Aligned_cols=165 Identities=10% Similarity=0.119 Sum_probs=138.5
Q ss_pred cccchhhHHHHHHHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhh
Q 041113 69 KSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDH 148 (983)
Q Consensus 69 ~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~ 148 (983)
+.|+++.|++++++|.+||||+||+|+|++. +.+++.+|||++|+||++|++ | ||+||++||++ +|++|.
T Consensus 13 p~pd~~~i~~~~~~L~~A~rPvii~G~G~~~-a~~~l~~lae~~~~Pv~tt~~-~------~g~~~~~hp~~--~G~~G~ 82 (183)
T d2ez9a1 13 PEPDVQAVTRLTQTLLAAERPLIYYGIGARK-AGKELEQLSKTLKIPLMSTYP-A------KGIVADRYPAY--LGSANR 82 (183)
T ss_dssp CBCCHHHHHHHHHHHHHCSSEEEEECGGGTT-CHHHHHHHHHHHTCCEEECGG-G------TTSSCTTCTTB--CCCCSS
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEcCCccc-chHHHHHHhhccceEEEeecc-c------cccccccCccc--cccccc
Confidence 4578899999999999999999999999864 467899999999999999997 6 79999999995 788888
Q ss_pred hccCccccccCCCCEEEEeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCC
Q 041113 149 ALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHR 227 (983)
Q Consensus 149 ~~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~ 227 (983)
.++..++..+++|||||+||+++....+..+ ++ ..++||||.|+.++++++++++.|++|++.+|++|.+.+....
T Consensus 83 ~~~~~~~~~i~~aDlil~vG~~l~~~~~~~~---~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~ 159 (183)
T d2ez9a1 83 VAQKPANEALAQADVVLFVGNNYPFAEVSKA---FKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERE 159 (183)
T ss_dssp SSCHHHHHHHHHCSEEEEESCCCTTTTTTTT---TTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHTCCCCC
T ss_pred cccHHHHhhhhccCceEEeecccCcccceee---cccccchheeeccHHHHhhcCCCCeEEEECHHHHHHHHHHHhhhcC
Confidence 8888888889999999999999975544322 33 3479999999999999999999999999999999999987766
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q 041113 228 SSKWCSFLRALDMMVASEI 246 (983)
Q Consensus 228 ~~~w~~~~~~~~~~~~~~~ 246 (983)
...|.....+..+.|+.++
T Consensus 160 ~~~~~~~~~~~~~~wr~~l 178 (183)
T d2ez9a1 160 STPWWQANLANVKNWRAYL 178 (183)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 6666655544445555444
|
| >d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.89 E-value=1.1e-23 Score=209.57 Aligned_cols=164 Identities=12% Similarity=0.039 Sum_probs=135.9
Q ss_pred cchhhHHHHHHHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhh
Q 041113 71 YTYCQMAEVLELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHA 149 (983)
Q Consensus 71 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~ 149 (983)
+++++|++++++|.+||||+||+|+|++ .++.+++.+|||++|+||++|++ | ||+||++||.+ ++|++|..
T Consensus 5 a~~~~i~~~~~~L~~AkrPvii~G~g~~~~~a~~~l~~lae~~giPv~tt~~-~------~g~~~~~~~~~-~~G~~g~~ 76 (179)
T d1ozha1 5 APDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQ-A------AGAVNQDNFSR-FAGRVGLF 76 (179)
T ss_dssp SCHHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEEECGG-G------TTTCCTTTCTT-EEEECSSB
T ss_pred CCHHHHHHHHHHHHhCCCEEEEEchhhChhhHHHHHHHHHHhccceEEeecc-c------ccccccccccc-cccccCcc
Confidence 3456899999999999999999999986 45678999999999999999997 6 89999988443 58888888
Q ss_pred ccCccccccCCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-CC
Q 041113 150 LLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-RS 228 (983)
Q Consensus 150 ~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-~~ 228 (983)
+...++..+++|||||+||+++.+..+..|. .+..++||||+|+.++++++++++.|++|++.+|++|++.+... ..
T Consensus 77 ~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~--~~~~kvI~id~d~~~i~~~~~~d~~i~gD~~~~l~~L~~~l~~~~~~ 154 (179)
T d1ozha1 77 NNQAGDRLLQLADLVICIGYSPVEYEPAMWN--SGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNIDHRLVL 154 (179)
T ss_dssp TTCHHHHHHHHCSEEEEESCCGGGSCGGGTC--CSCSEEEEEESSCCCCBTTBCCSEEEESCHHHHHHHHHHTCCSCCCC
T ss_pred ccHHHhhhhccccceEEEccccccccccccc--cccccEEEEecchhhcCCccCCCeEEEeCHHHHHHHHHHhhhccCCC
Confidence 8888888899999999999999766655442 22347999999999999999999999999999999999988653 44
Q ss_pred hhHHHHHHHHHHHHHH
Q 041113 229 SKWCSFLRALDMMVAS 244 (983)
Q Consensus 229 ~~w~~~~~~~~~~~~~ 244 (983)
..|..++.+.++.++.
T Consensus 155 ~~~~~~~~~~~~~~~~ 170 (179)
T d1ozha1 155 SPQAAEILRDRQHQRE 170 (179)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5677666655554433
|
| >d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.89 E-value=6.7e-24 Score=211.20 Aligned_cols=145 Identities=10% Similarity=0.111 Sum_probs=124.4
Q ss_pred chhhHHHHHHHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccch----
Q 041113 72 TYCQMAEVLELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHL---- 146 (983)
Q Consensus 72 ~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~---- 146 (983)
..+++++++++|.+||||+||+|.|++ .++.+++++|||++|+||++|++ | ||+||++||+| +|++
T Consensus 5 ~~~~i~~a~~lL~~AkrPvii~G~g~~~~~a~~~l~~lae~~~iPv~~t~~-~------kg~~p~~hp~~--~G~~~~~~ 75 (177)
T d2ihta1 5 WQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYI-A------KGVLPVGHELN--YGAVTGYM 75 (177)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECST-T------TTSSCTTCTTE--EEECCTTH
T ss_pred CHHHHHHHHHHHHhCCCEEEEECcCcchhhhHHHHHHHhhcceEEEEeccc-c------ccCCCCcccce--eeeeeecc
Confidence 467899999999999999999999986 45678999999999999999998 6 89999999996 5655
Q ss_pred -hhhccCccccccCCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC
Q 041113 147 -DHALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP 225 (983)
Q Consensus 147 -g~~~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~ 225 (983)
|..++...+..+++||+||++|+++.+..+..+.......++||||+|+.++++++++++.|.+|++.++++|.+.+..
T Consensus 76 ~G~~~~~~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~~~~~k~I~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~~ 155 (177)
T d2ihta1 76 DGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATAS 155 (177)
T ss_dssp HHHHTSCHHHHHHTTCCEEEEETCCGGGCCCHHHHCCSSCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTTT
T ss_pred ccccccHHHHHHhccCCceEEecccccccccccccccCCccceeEEcCCHHHhCCccCCCeEEEeCHHHHHHHHHHHhhh
Confidence 5566777788899999999999999765544443333345799999999999999999999999999999999988754
|
| >d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=99.88 E-value=4.1e-23 Score=204.80 Aligned_cols=161 Identities=13% Similarity=0.116 Sum_probs=132.2
Q ss_pred ccchhhHHHHHHHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhh
Q 041113 70 SYTYCQMAEVLELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDH 148 (983)
Q Consensus 70 ~~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~ 148 (983)
.|+++.|++++++|.+||||+||+|+|++ .++.+++.+|+|++|+||++|++ | ||+||++||++ .|.++
T Consensus 3 ~P~~~~l~~a~~~L~~A~rPvii~G~g~~~~~a~~~l~~lae~~~iPv~~t~~-~------~g~~~~~h~~~--~~~~~- 72 (175)
T d2ji7a1 3 IPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGM-A------KGLLPDNHPQS--AAATR- 72 (175)
T ss_dssp CCCHHHHHHHHHHHHTCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEECTT-T------BTTBCTTCTTB--CGGGH-
T ss_pred CcCHHHHHHHHHHHHhCCCEEEEECCCccccccHHHHHHHhhhceeeeecccc-c------cccCCCccccc--ccccc-
Confidence 45788999999999999999999999876 34578999999999999999997 6 79999999996 44443
Q ss_pred hccCccccccCCCCEEEEeCCccccHHHHHHHHhcCC--ceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC-
Q 041113 149 ALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFP--CTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP- 225 (983)
Q Consensus 149 ~~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~--~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~- 225 (983)
...+.+|||||+||++++...+.++...+.+ .++||||+|+.+++++++.++.|++|++.++++|.+.+..
T Consensus 73 ------~~~l~~aDlii~vG~~~~~~~~~~~~~~~~~~~~kvI~Id~d~~~i~~~~~~~l~i~~D~~~~l~~L~~~l~~~ 146 (175)
T d2ji7a1 73 ------AFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALKGA 146 (175)
T ss_dssp ------HHHHHHCSEEEEESCCSSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHTTTC
T ss_pred ------cceeecccceeeeeccCCcccccccccccCCccceEEEEeccchhhccccCcCceEEEcHHHHHHHHHHHhccC
Confidence 2357899999999999976666555444433 4699999999999999999999999999999999998754
Q ss_pred -CCChhHHHHHHHHHHHHHHHH
Q 041113 226 -HRSSKWCSFLRALDMMVASEI 246 (983)
Q Consensus 226 -~~~~~w~~~~~~~~~~~~~~~ 246 (983)
.....|.+.+++....+..++
T Consensus 147 ~~~~~~w~~~~~~~~~~~~~~~ 168 (175)
T d2ji7a1 147 PKADAEWTGALKAKVDGNKAKL 168 (175)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 345678887776665555444
|
| >d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=1.8e-23 Score=206.68 Aligned_cols=156 Identities=18% Similarity=0.226 Sum_probs=130.4
Q ss_pred HHHHHHHhcCCceEEEEccCC-C-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCcc
Q 041113 77 AEVLELVQGVNKGLLLVGAVH-N-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSES 154 (983)
Q Consensus 77 ~~~~~~L~~AkrPvIl~G~g~-~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~ 154 (983)
++++++|.+|||||||+|+|+ + .++.+++.+|||++|+||++|++ | ||+||++||++ +|..|..+...+
T Consensus 1 nkaa~lL~~AkrPvii~G~G~~~~~~a~~~l~~lae~~g~Pv~tt~~-~------~g~~~~~hp~~--~G~~g~~~~~~a 71 (171)
T d1t9ba1 1 NKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQ-G------LGSFDQEDPKS--LDMLGMHGCATA 71 (171)
T ss_dssp HHHHHHHHTCSSEEEEECGGGGGSTTHHHHHHHHHHHTTCCEEECGG-G------TTSSCTTSTTE--EEECSTTSCHHH
T ss_pred CHHHHHHHHCCCeEEEECcChhhhhhHHHHHHHHHHhcCCceeeccc-c------cccccCCcccc--cccccccccHHH
Confidence 478999999999999999987 4 34567999999999999999997 6 79999999996 788888888888
Q ss_pred ccccCCCCEEEEeCCccccHHHHHHH--------Hhc-CCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC
Q 041113 155 VKDWIQFDVIIQIGSRITSKRISQMI--------EEC-FPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP 225 (983)
Q Consensus 155 ~~~~~~aDlvl~iG~~~~~~~~~~~~--------~~~-~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~ 225 (983)
+..+++||+||++|+++....+.++. ... ...++||||+|+.++++++++++.|++|++.++++|++.+..
T Consensus 72 ~~~~~~~Dlvl~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~iI~Id~d~~el~~~~~~d~~i~~D~~~~l~~L~~~l~~ 151 (171)
T d1t9ba1 72 NLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIFP 151 (171)
T ss_dssp HHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTTSCC
T ss_pred HhhhhcccceeecccccccccccccchhhhhhhhcccCCCceEEEEeCCccccCCcccCceeEEEcHHHHHHHHHHhccc
Confidence 88899999999999998765543221 112 234799999999999999999999999999999999998754
Q ss_pred -CCChhHHHHHHHHHHH
Q 041113 226 -HRSSKWCSFLRALDMM 241 (983)
Q Consensus 226 -~~~~~w~~~~~~~~~~ 241 (983)
..+.+|.+++.+.+++
T Consensus 152 ~~~~~~W~~~~~~~k~~ 168 (171)
T d1t9ba1 152 VKERSEWFAQINKWKKE 168 (171)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHH
Confidence 3567888887766553
|
| >d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.87 E-value=1.9e-22 Score=188.55 Aligned_cols=123 Identities=24% Similarity=0.339 Sum_probs=101.8
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHHH-HHhHhcc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLRF-LLHFMTG 570 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~~-~~~~l~g 570 (983)
|||++|+++.+++|++.||.++.+++ ..++.++|+|+|++|++||||+.+.+ ++.++...+...++. +.|.++|
T Consensus 1 MkI~~i~~~~~~~Pl~~p~~~s~~~~----~~~~~~iv~i~t~~G~~G~GE~~~~~~~~~e~~~~~~~~i~~~~~p~l~g 76 (125)
T d1jpma2 1 MKIIRIETSRIAVPLTKPFKTALRTV----YTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLG 76 (125)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEE----EEEEEEEEEEEETTSCEEEEEECCBTTTTCBCHHHHHHHHHHTHHHHHTT
T ss_pred CEEEEEEEEEEEeeccCCeEccCeEE----EEEEEEEEEEEECCCCEEEEEecccccccccccchhHHHHHHHHHhhhcc
Confidence 79999999999999999999998765 45999999999999999999998875 456777777676654 7899999
Q ss_pred CcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCC
Q 041113 571 AKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYP 629 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg 629 (983)
+++.++..++.. +.... ..+++|++|||||+||++||.+|+|||+||||
T Consensus 77 ~~~~~~~~~~~~-----l~~~~-----~~~~~a~aaid~AlwDl~~K~~g~pl~~llGG 125 (125)
T d1jpma2 77 KSLAGYEAILHD-----IQHLL-----TGNMSAKAAVEMALYDGWAQMCGLPLYQMLGG 125 (125)
T ss_dssp CBGGGHHHHHHH-----HHHSS-----SSCHHHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred cCcccHHHHHHH-----hhhhc-----cCccHHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 998876554432 11111 22578999999999999999999999999997
|
| >d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=99.84 E-value=1.1e-21 Score=183.34 Aligned_cols=122 Identities=20% Similarity=0.166 Sum_probs=99.4
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC---cCcccHHHHHHHHHH-HHhHh
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQLRF-LLHFM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~---~~~~~~~~~~~~l~~-~~~~l 568 (983)
|||++|+++.+++||+.||.++.++. ..++.++|+|+| ||.+||||+.+.. +.+++.+.+...++. +.|.+
T Consensus 1 MkI~~ie~~~~~~Pl~~p~~~s~~~~----~~~~~v~v~i~~-dG~~G~GE~~~~~~~~~~~~~~~~~~~~l~~~l~p~l 75 (126)
T d2chra2 1 MKIDAIEAVIVDVPTKRPIQMSITTV----HQQSYVIVRVYS-EGLVGVGEGGSVGGPVWSAECAETIKIIVERYLAPHL 75 (126)
T ss_dssp CCCCEEEEEEEEEEEEEEEECSSCEE----EEEEEEEEEEEB-TTBCCEEECCCSTTTTTSSCCHHHHHHHHHHHTHHHH
T ss_pred CEEEEEEEEEEeccccCceEeccceE----eeeeEEEEEEEc-CCceEeEeecccCCCccccchHHHHHHHHHHHhcccc
Confidence 79999999999999999999998765 448999999997 5999999998753 456777776666655 68999
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCC
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYP 629 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg 629 (983)
+|+++.++..++.. +... ...+++|++||||||||+.||..|+|||+||||
T Consensus 76 ig~~~~~~~~~~~~-----~~~~-----~~~~~~A~aaid~AlwDl~~K~~~~pl~~llGG 126 (126)
T d2chra2 76 LGTDAFNVSGALQT-----MARA-----VTGNASAKAAVEMALLDLKARALGVSIAELLGG 126 (126)
T ss_dssp TTSCTTCHHHHHHH-----HHTT-----CSSCHHHHHHHHHHHHHHHHHHTTCCHHHHTTC
T ss_pred cccccccHHHHHHH-----hhhc-----cccchHHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 99998876655432 1111 123578999999999999999999999999997
|
| >d1nu5a2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=99.84 E-value=3e-21 Score=180.41 Aligned_cols=122 Identities=15% Similarity=0.109 Sum_probs=99.5
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC---cCcccHHHHHHHHHH-HHhHh
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQLRF-LLHFM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~---~~~~~~~~~~~~l~~-~~~~l 568 (983)
|||++|+++.+++||+.||.+++++. ..++.++|+|+| ||++|||||.|.+ +..++.+.+...++. +.|.+
T Consensus 1 MKI~~i~~~~~~~Pl~~p~~~s~~~~----~~~~~~~V~i~~-dG~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~p~l 75 (126)
T d1nu5a2 1 MKIEAISTTIVDVPTRRPLQMSFTTV----HKQSYVIVQVKA-GGLVGIGEGGSVGGPTWGSESAETIKVIIDNYLAPLL 75 (126)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEEE-TTEEEEEEECCSTTTTTSSCCHHHHHHHHHHTHHHHH
T ss_pred CEEEEEEEEEEecccCCCeEecceEE----EeeeEEEEEEEc-CCeEEEeeccccCCCccccccHHHHHHHHHHHhhhhh
Confidence 79999999999999999999998764 458999999997 5999999998854 446777777666764 78999
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCC
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYP 629 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg 629 (983)
+|+++.++..++.. +...+ ..+++|++||||||||+.||..|+|||+||||
T Consensus 76 ~g~~~~~~~~~~~~-----~~~~~-----~~~~~A~aaid~AlwDl~~K~~~~pl~~llGG 126 (126)
T d1nu5a2 76 VGKDASNLSQARVL-----MDRAV-----TGNLSAKAAIDIALHDLKARALNLSIADLIGG 126 (126)
T ss_dssp TTSBTTCHHHHHHH-----HHHHC-----SSCHHHHHHHHHHHHHHHHHHTTCBHHHHHTC
T ss_pred hhcCcccHHHHHHH-----hhhhh-----hccchHHHHHHHHHHHHHHHHcCCCHHHHcCC
Confidence 99998876544321 11111 12478999999999999999999999999997
|
| >d1rvka2 d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.83 E-value=5.2e-21 Score=178.21 Aligned_cols=126 Identities=15% Similarity=0.104 Sum_probs=94.7
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAK 572 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~ 572 (983)
|||++|+++.+++|++.|+..+........+..+.++|+|+|++|++||||+.+.....+. .-+.+.|.++|++
T Consensus 1 MkIt~v~~~~~~~pl~~~~~~a~~~~~g~~~~~~~v~V~v~td~G~~G~Ge~~~~~~~~~~------i~~~l~~~lig~~ 74 (126)
T d1rvka2 1 MIITDVEVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQEGHSFTAPEIVRPHV------IEKFVKKVLIGED 74 (126)
T ss_dssp CBEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTSCEEEEEECGGGGCHHH------HHHTHHHHHTTSB
T ss_pred CEEEEEEEEEEEeeCCCccccccccCCCCcceeEEEEEEEEECCCCEEEEEeCCHHHHHHH------HHHHHHHHHhhcC
Confidence 7999999999999999999887643211123488999999999999999999765432221 1145789999999
Q ss_pred ccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCC
Q 041113 573 ISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYP 629 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg 629 (983)
+.+++.++.... .............|++|||+|||||+||.+|+|||+||||
T Consensus 75 ~~~~~~~~~~~~-----~~~~~~~~~~~~~A~aavdiAlwDl~~K~~g~Pl~~LLGG 126 (126)
T d1rvka2 75 HRDRERLWQDLA-----HWQRGSAAQLTDRTLAVVDCALWDLAGRSLGQPVYKLIGG 126 (126)
T ss_dssp TTCHHHHHHHHH-----HHHTTTTTCSCHHHHHHHHHHHHHHHHHHHTCBHHHHHCC
T ss_pred cchhhhhhhhhc-----cccccCCcchhhHHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 887655543221 1111122345688999999999999999999999999997
|
| >d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=99.83 E-value=5.6e-21 Score=175.44 Aligned_cols=115 Identities=19% Similarity=0.190 Sum_probs=93.1
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAK 572 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~ 572 (983)
|||++|+++.+++|++.||.++.+.. ..++.++|+|+||+|++|||||.+.. .... ....+.+.|.++|++
T Consensus 1 mKI~~i~~~~~~~pl~~p~~~s~~~~----~~~~~~~v~i~~d~G~~G~Ge~~~~~---~~~~--~~i~~~l~~~l~g~~ 71 (115)
T d2gdqa2 1 VKIVRIETFPLFHRLEKPYGDANGFK----RYRTCYLIRIITESGIDGWGECVDWL---PALH--VGFTKRIIPFLLGKQ 71 (115)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEEETTSCEEEEEECSCH---HHHH--HHHHHTHHHHHTTSB
T ss_pred CEEEEEEEEEEeeecCCceEecCeEE----EeeeEEEEEEEECCcceEEEecCCch---hhhH--HHHHHHHhhhhcccC
Confidence 69999999999999999999988764 45899999999999999999997643 1111 223356889999999
Q ss_pred ccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCC
Q 041113 573 ISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYP 629 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg 629 (983)
+.+.+.++.. +. ..++.|++||||||||+.||..|+|||+||||
T Consensus 72 ~~~~~~~~~~-----~~--------~~~~~a~aaid~AlwDl~~K~~~~Pl~~lLGG 115 (115)
T d2gdqa2 72 AGSRLSLVRT-----IQ--------KWHQRAASAVSMALTEIAAKAADCSVCELWGG 115 (115)
T ss_dssp TTCHHHHHHH-----HH--------HHCHHHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred hhhHHHHHHH-----HH--------HhhhHHHHHHHHHHHHHHHHHhCCCHHHHcCC
Confidence 8876555432 11 12467999999999999999999999999997
|
| >d1wufa2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=99.82 E-value=6.3e-21 Score=177.85 Aligned_cols=122 Identities=20% Similarity=0.241 Sum_probs=98.4
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC---cCcccHHHHHHHHH-HHHhHh
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQLR-FLLHFM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~---~~~~~~~~~~~~l~-~~~~~l 568 (983)
|||++|+++.+++||+.||.++++.+ ..++.++|+|+|++|++|||||.+.+ ++.|+...+...++ .+.|.+
T Consensus 1 Mki~~i~~~~~~lPl~~p~~~s~~~~----~~~~~~iv~i~t~~G~~G~GE~~~~~~~~~~~e~~~~~~~~l~~~l~p~l 76 (126)
T d1wufa2 1 MYFQKARLIHAELPLLAPFKTSYGEL----KSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLSSAILIIKEQLLPLL 76 (126)
T ss_dssp EECCEEEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEECSSSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTTHHHH
T ss_pred CEEEEEEEEEEeccccCCEECcCEEE----EEEEEEEEEEEECCCcEEEEEEeecCccCCChhhhhhhhheeeecccchh
Confidence 79999999999999999999998865 45899999999999999999987543 56677777666665 478899
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCC
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYP 629 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg 629 (983)
.|+++.+...+. ..+. ....+++|++||||||||+.||..|+|||+|||.
T Consensus 77 ~g~~~~~~~~i~---------~~~~--~~~~~~~A~aaid~AlwDl~~K~~~~pl~~lLGa 126 (126)
T d1wufa2 77 AQRKIRKPEEIQ---------ELFS--WIQGNEMAKAAVELAVWDAFAKMEKRSLAKMIGA 126 (126)
T ss_dssp HHCEESSTTHHH---------HHHT--TSCSCHHHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred cCCCchhHHHHH---------HHhh--hccCchHHHHHHHHHHHHHHHHHcCCcHHHHhCc
Confidence 998877643322 1111 1123578999999999999999999999999983
|
| >d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=1e-21 Score=195.31 Aligned_cols=145 Identities=10% Similarity=0.089 Sum_probs=114.7
Q ss_pred ccchhhHHHHHHHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccch-h
Q 041113 70 SYTYCQMAEVLELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHL-D 147 (983)
Q Consensus 70 ~~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~-g 147 (983)
.++++.+++++++|.+||||+||+|+|++ .++.+++++|+|++|+||++|++ | ||+||++||+| +|.+ |
T Consensus 14 ~~~~~~i~~~~~~l~~AkrPvii~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~-g------kg~~~e~hp~~--~G~~~g 84 (179)
T d1pvda1 14 ESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPM-G------KGSISEQHPRY--GGVYVG 84 (179)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEECGGGTTTSTHHHHHHHHHHHCCCEEECGG-G------TTSSCTTSTTE--EEECCS
T ss_pred cccHHHHHHHHHHHHhCCCCEEEEecccchhhhHHHHHHHHHhhCceEEeccc-c------ccccccccccc--cccccc
Confidence 45678899999999999999999999986 46788999999999999999998 6 89999999996 6765 4
Q ss_pred hhccCccccccCCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 148 HALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 148 ~~~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
..+....+..+++||+||+||+++++..+.+|...+.+.++||||.|+..++..+..++.+.+|++.++++|.+..
T Consensus 85 ~~~~~~~~~~~~~aDlvl~lG~~~~d~~t~~~~~~~~~~~iI~i~~d~~~i~~~~~~~v~i~~~l~~ll~~l~~~~ 160 (179)
T d1pvda1 85 TLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTNIADAA 160 (179)
T ss_dssp TTSCHHHHHHHHTCSEEEEESCCCCC----------CCCEEEEEETTEEEETTEEEETCCHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHhhcCCEEEEEcCCccccccCcCcccCCCCcEEEEeCCHHHhCCcccCCccHHHHHHHHHHHHHHHH
Confidence 4555566678899999999999999988888876666668999999999998887777777777777777766543
|
| >d2mnra2 d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=99.81 E-value=7.2e-20 Score=172.38 Aligned_cols=128 Identities=13% Similarity=0.101 Sum_probs=95.3
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccC
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGA 571 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~ 571 (983)
+|+|++|+++.+++|++.||.++.+++ ..++.++|+|+|++|++||||+.+... .+.......++.+.+.+.+.
T Consensus 1 ~~~I~~i~~~~~~~Pl~~p~~~s~~~~----~~~~~~~V~i~t~~G~~G~Ge~~~~~~--~~~~~~~~~~~~~~~~l~~~ 74 (130)
T d2mnra2 1 EVLITGLRTRAVNVPLAYPVHTAVGTV----GTAPLVLIDLATSAGVVGHSYLFAYTP--VALKSLKQLLDDMAAMIVNE 74 (130)
T ss_dssp CCBEEEEEEEEEEECCSSCEEETTEEE----CSEEEEEEEEEETTSCEEEEEEECSSG--GGHHHHHHHHHHHHHHHTTS
T ss_pred CCEEEEEEEEEEEecccCCeeccceEE----eeceEEEEEEEECCccceeeeeeecCc--ccchhHHHHHHHHHHHhccC
Confidence 479999999999999999999999875 348999999999999999999987642 22333444556677888776
Q ss_pred cccccccccccCchhhhhhhc-CCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCC
Q 041113 572 KISYFLPLLKGSFSSWIWSTL-GIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLT 631 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~ 631 (983)
+.... ..+. .++... .....+...+|++|||+||||+.||..|+|||+||||+.
T Consensus 75 ~~~~~-~~~~-----~~~~~~~~~~~~~~~~~a~aaid~AlwDl~~K~~~~Pl~~lLGG~~ 129 (130)
T d2mnra2 75 PLAPV-SLEA-----MLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANA 129 (130)
T ss_dssp BSCHH-HHHH-----HHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCC
T ss_pred CCCHH-HHHH-----HHHHHhhhhccCCchHHHHHHHHHHHHHHHHHHhCCCHHHHhCCCC
Confidence 54321 1111 111111 111234567899999999999999999999999999975
|
| >d2gl5a2 d.54.1.1 (A:1-122) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=99.81 E-value=1.8e-20 Score=173.60 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=91.0
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAK 572 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~ 572 (983)
|||++|+++.+++|++.++.++ ++.++|+|+||+|++||||+.+.... ........++.+.|.++|++
T Consensus 1 MKI~~Ie~~~~~~p~~~~~~~~----------~~~iiV~i~td~Gi~G~Ge~~~~~~~--~~~~~~~~~~~~~~~lig~~ 68 (122)
T d2gl5a2 1 LKITSIEVFDCELKKRDQTMSS----------YNPVLIRVNTDSGLSGIGEVGLAYGA--GAKAGVGIIRDLAPLIVGED 68 (122)
T ss_dssp CCEEEEEEEECCGGGTCGGGTT----------CCCEEEEEEETTSCEEEEEESCSSST--THHHHHHHHHHHGGGTTTSC
T ss_pred CEEeEEEEEEEcCCCCCCcccc----------ceeEEEEEEECCCCEEEEeecccccc--chHHHHHHHHHHHhhhcccc
Confidence 7999999999999997764332 45689999999999999999765422 22334456678999999999
Q ss_pred ccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCC
Q 041113 573 ISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYP 629 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg 629 (983)
+.+++.++...+....+ .........+|++|||+||||++||..|+|||+||||
T Consensus 69 ~~~~e~~~~~l~~~~~~---~~~~~~~~~~a~aaid~AlwDl~~K~~~~PL~~lLGG 122 (122)
T d2gl5a2 69 PLNIEKIWEFFFRKTFW---GMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLGG 122 (122)
T ss_dssp TTCHHHHHHHHHHSSSG---GGSCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTS
T ss_pred cchhhHHHHHHhhhccc---ccccCCcccchHHHHHHHHHHHHHHHhCCCHHHHcCC
Confidence 88766555322111100 0112234567999999999999999999999999997
|
| >d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=99.80 E-value=6.8e-21 Score=188.52 Aligned_cols=142 Identities=11% Similarity=0.079 Sum_probs=118.5
Q ss_pred cchhhHHHHHHHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccc-hhh
Q 041113 71 YTYCQMAEVLELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDH-LDH 148 (983)
Q Consensus 71 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~-~g~ 148 (983)
.....+++++++|.+||||+||+|+|++ .++.+++.+|+|++|+||++|++ | ||+||++||+| +|. .|.
T Consensus 7 ~l~~~v~~~~~~l~~AkrPvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~-g------kg~i~e~~p~~--~G~~~G~ 77 (175)
T d1zpda1 7 SLNAAVDETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVATMAA-A------KSFFPEENALY--IGTSWGE 77 (175)
T ss_dssp HHHHHHHHHHHHHTTCSCEEEEECTTTTTTTCHHHHHHHHHHHCCCEEEEGG-G------TTSSCTTSTTE--EEEECGG
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECcCccccchHHHHHHHHHhhceeEEeccc-c------ccCCCcccccc--cCCcccc
Confidence 3456899999999999999999999987 46678999999999999999998 6 89999999996 676 455
Q ss_pred hccCccccccCCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC
Q 041113 149 ALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP 225 (983)
Q Consensus 149 ~~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~ 225 (983)
.++...++.+++||+||++|++++++.+.+|...+++.++||||.|+.+++..+..++ +++++|++|.+.+..
T Consensus 78 ~~~~~~~~~~~~aDlvl~lG~~~~d~~t~~~~~~~~~~~~I~i~~d~~~i~~~~~~~v----~~~~~l~~L~~~l~~ 150 (175)
T d1zpda1 78 VSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSV----HLKDYLTRLAQKVSK 150 (175)
T ss_dssp GSCTTHHHHHHHCSEEEEESCCCBTTTTTTTTCCCCGGGEEEECSSEEEETTEEEESC----CHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHhcCceEEEEcCccCccccCCccccCCCCeEEEEeCchheEcccccCCc----CHHHHHHHHHHHhcc
Confidence 5666667788999999999999988887777654445579999999988876554433 689999999998764
|
| >d1muca2 d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (cis muconate cycloisomerase) {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Muconate-lactonizing enzyme (cis muconate cycloisomerase) species: Pseudomonas putida [TaxId: 303]
Probab=99.80 E-value=1.3e-19 Score=169.79 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=86.1
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC---cCcccHHHHHHHHH-HHHhHhc
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQLR-FLLHFMT 569 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~---~~~~~~~~~~~~l~-~~~~~l~ 569 (983)
.|++|+++.+++||++|+.++.+.+ ..++.++|||+|++|++||||+.+.. +..++.......+. .+.|.+.
T Consensus 2 ~I~~ie~~~~~~Pl~~p~~~s~~~~----~~~~~~iV~i~td~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (127)
T d1muca2 2 LIERIDAIIVDLPTIRPHKLAMHTM----QQQTLVVLRVRCSDGVEGIGEATTIGGLAYGYESPEGIKANIDAHLAPALI 77 (127)
T ss_dssp BEEEEEEEEEEEEBCC-------------CEEEEEEEEEEETTSCEEEEEEECSTTTTTSSCCHHHHHHHHHHTHHHHHT
T ss_pred EEeEEEEEEEeccccCceEccceeE----eeeeEEEEEEEeCCCcEEEEEeeccccccccccchHHHHHHHHhhhccccc
Confidence 4999999999999999999998765 45899999999999999999998753 23444444444333 3567888
Q ss_pred cCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCC
Q 041113 570 GAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYP 629 (983)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg 629 (983)
++++.++..++.. ..... ...++|++||||||||+.||..|+|||+||||
T Consensus 78 ~~~~~~~~~~~~~-----~~~~~-----~~~~~a~aaid~AlwDl~~K~~g~Pl~~lLGG 127 (127)
T d1muca2 78 GLAADNINAAMLK-----LDKLA-----KGNTFAKSGIESALLDAQGKRLGLPVSELLGG 127 (127)
T ss_dssp TSBTTCHHHHHHH-----HHHHC-----SSCHHHHHHHHHHHHHHHHHHHTCBHHHHTTC
T ss_pred ccchhhHHHHHHH-----hhhhc-----ccchHHHHHHHHHHHHHHHHHcCCCHHHHcCC
Confidence 8877665443321 11111 23578999999999999999999999999997
|
| >d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=99.79 E-value=2.4e-21 Score=189.17 Aligned_cols=139 Identities=13% Similarity=0.105 Sum_probs=114.5
Q ss_pred chhhHHHHHHHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchh-hh
Q 041113 72 TYCQMAEVLELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLD-HA 149 (983)
Q Consensus 72 ~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g-~~ 149 (983)
....+++++++|++||||+||+|+|+. +++.+++++|+|++++||+||++ | ||+|||+||+| .|+++ ..
T Consensus 15 l~a~~~~a~~~l~~AkrP~il~G~gv~~~~a~~~l~~l~e~~~iPv~tt~~-g------kg~i~e~~p~~--~G~~~G~~ 85 (161)
T d1ovma1 15 LKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLM-G------KGIFDERQAGF--YGTYSGSA 85 (161)
T ss_dssp HHHHHHHHHHHHHTCSCEEEEECHHHHHTTCHHHHHHHHHHSCCEEEECGG-G------TTSSCTTSTTC--CCCCCGGG
T ss_pred HHHHHHHHHHHHHcCCCcEEEECcCcChhhhHHHHHHHHHhcCccEEEcCC-c------CCccccccccc--ccccCCCc
Confidence 445677888999999999999999986 56778999999999999999998 6 89999999996 67764 44
Q ss_pred ccCccccccCCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 150 LLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 150 ~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
+++..+..+++||+||+||+++++..+.+|...+++.++||||.|+.+++..+..++ ++++++++|.+.+
T Consensus 86 ~~~~~~~~i~~aDliL~iG~~l~~~~t~~~~~~~~~~kiI~id~d~~~i~~~~~~~v----~l~~~l~~L~e~l 155 (161)
T d1ovma1 86 STGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVGDVWFTGI----PMNQAIETLVELC 155 (161)
T ss_dssp SCHHHHHHHHTSSEEEEESCCCCTTTTTTTCCCCCTTTEEEECSSEEEETTEEEESC----CHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCEEEEECCcccccccccccccCCCceEEEEeCCHHHhCCeeecCc----cHHHHHHHHHHHH
Confidence 444556678999999999999988887777655556689999999999988776665 4567777777655
|
| >d1wuea2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.79 E-value=1.3e-19 Score=169.53 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=93.8
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC---cCcccHHHHHHHHH-HHHhHh
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQLR-FLLHFM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~---~~~~~~~~~~~~l~-~~~~~l 568 (983)
|||++|+++.+++||+.||.++.+++ ..++.++|+|+|++|++||||+.+.. +..++...+...+. .+.+.+
T Consensus 1 MKI~~ie~~~~~~pl~~p~~~s~~~~----~~~~~~~v~i~t~~G~~G~GE~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 76 (126)
T d1wuea2 1 MNIQSIETYQVRLPLKTPFVTSYGRL----EEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLVTERFIIQQHLIPLL 76 (126)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEEETTSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTHHHHH
T ss_pred CEEeEEEEEEEeccccCCEEccCeEE----EeeeEEEEEEEECCCcEEEEEEeccCccccchhhhhhhhhhhhccccccc
Confidence 79999999999999999999998765 45899999999999999999998754 34556555444443 356778
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCC
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYP 629 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg 629 (983)
.++++.+...+.. .+. ....+++|++||||||||+.||..|+|||+|||.
T Consensus 77 ~~~~~~~~~~~~~---------~~~--~~~~~~~a~aaid~AlwDl~ak~~~~pl~~lLG~ 126 (126)
T d1wuea2 77 LTEAIEQPQEVST---------IFE--EVKGHWMGKAALETAIWDLYAKRQQKSLTEFFGP 126 (126)
T ss_dssp TTSCCCSTHHHHH---------HGG--GSCSCHHHHHHHHHHHHHHHHHHTTSBGGGGSSS
T ss_pred cccccccHHHHHH---------HHh--hccCccHHHHHHHHHHHHHHHHHhCCCHHHHhCc
Confidence 8877665333221 111 1123578999999999999999999999999983
|
| >d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.77 E-value=6.1e-19 Score=165.12 Aligned_cols=122 Identities=20% Similarity=0.117 Sum_probs=86.1
Q ss_pred ceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC---cCcccHHHHHHHH-HHHHhH
Q 041113 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQL-RFLLHF 567 (983)
Q Consensus 492 ~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~---~~~~~~~~~~~~l-~~~~~~ 567 (983)
+|||++|+++.+++||+.||.++++.+ +.++.++|++++ +|.+||||+.+.. +..+........+ ..+.|.
T Consensus 2 m~kI~~ie~~~~~~Pl~~p~~~s~~~~----~~~~~vvv~~~~-~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (127)
T d1r0ma2 2 MFKIEAAEIVVARLPLKFRFETSFGVQ----THKVVPLLILHG-EGVQGVAEGTMEARPMYREETIAGALDLLRGTFLPA 76 (127)
T ss_dssp CEECCEEEEEEEEEEBC--------------CEEEEEEEEEEE-TTEEEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHH
T ss_pred CceEEEEEEEEEeecccCCEECcCcEE----EeeeEEEEEEEc-CCcEEEEEEEcCCCcccchhhhhhhhhhhhhhcccc
Confidence 499999999999999999999998765 348888888886 5999999998764 3445554444433 346788
Q ss_pred hccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCC
Q 041113 568 MTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYP 629 (983)
Q Consensus 568 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg 629 (983)
+.|+++.++..++.. +. ....+++|++||||||||+.||..|+|||++|||
T Consensus 77 ~~~~~~~~~~~~~~~---------~~--~~~~~~~a~aaid~AlwDl~aK~~~~pl~~llGG 127 (127)
T d1r0ma2 77 ILGQTFANPEAVSDA---------LG--SYRGNRMARAMVEMAAWDLWARTLGVPLGTLLGG 127 (127)
T ss_dssp HTTCEESSHHHHHHT---------TT--TSCSCHHHHHHHHHHHHHHHHHHHTCBHHHHHTC
T ss_pred cccCChhhHHHHhhh---------hc--ccCCchHHHHHHHHHHHHHHHHHhCCcHHHHcCC
Confidence 899888775544321 11 1133578999999999999999999999999997
|
| >d1jdfa2 d.54.1.1 (A:5-137) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.4e-18 Score=163.46 Aligned_cols=128 Identities=15% Similarity=0.085 Sum_probs=93.9
Q ss_pred ccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhc
Q 041113 490 LSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMT 569 (983)
Q Consensus 490 ~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~ 569 (983)
|+.++||+|++++++.|.+.++..+.... .....++|||+|++|++||||+.+... ....++.+.|.++
T Consensus 1 ~~~p~It~i~~~~v~~~~~~~~~~~~~~~----~~~~~~iV~l~t~~Gi~G~Ge~~~~~~-------~~~~~~~~~~~l~ 69 (133)
T d1jdfa2 1 FTTPVVTEMQVIPVAGHDSMLMNLSGAHA----PFFTRNIVIIKDNSGHTGVGEIPGGEK-------IRKTLEDAIPLVV 69 (133)
T ss_dssp CCCCBEEEEEEEEEEEECCCBEETTEECC----SEEEEEEEEEEETTSCEEEEEEECCHH-------HHHHHHHHHHHHT
T ss_pred CCCCeEEEEEEEEecccCcccccCCCCcC----CccceEEEEEEECCCCEEEEEecCcHH-------HHHHHHhhhhhhc
Confidence 56689999999999999988887765432 236678999999999999999976432 1234467889999
Q ss_pred cCcccccccccccCchhhhhhhc-C----CCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcC
Q 041113 570 GAKISYFLPLLKGSFSSWIWSTL-G----IPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILY 628 (983)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLG 628 (983)
|+++.+++.++........+... + ........+|++|||+||||++||.+|+|||+|||
T Consensus 70 g~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pl~~LLG 133 (133)
T d1jdfa2 70 GKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLG 133 (133)
T ss_dssp TCBGGGHHHHHHHHHHHTGGGGTTCSCSSSSCCCCHHHHHHHHHHHHHHHHHHHHTSBGGGGST
T ss_pred CCChhhHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHcC
Confidence 99988765554322111111100 0 11223578899999999999999999999999998
|
| >d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=99.76 E-value=1.8e-20 Score=183.04 Aligned_cols=147 Identities=12% Similarity=0.098 Sum_probs=119.2
Q ss_pred ccchhhHHHHHHHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhh
Q 041113 70 SYTYCQMAEVLELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDH 148 (983)
Q Consensus 70 ~~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~ 148 (983)
.++++++++++++|++||||+|++|.|++ .++.+++.+|||++|+||++|++.+ ++++|++||++ .|..+
T Consensus 3 ~~~~~~ld~~~~~l~~A~rPvii~G~g~~~~~~~~~l~~lae~l~~pv~~t~~~~------~~~~~~~~p~~--~G~~~- 73 (160)
T d1q6za1 3 RLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAP------RCPFPTRHPCF--RGLMP- 73 (160)
T ss_dssp CCCHHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSSCS------BCCSCTTSTTE--EEECC-
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEECcCccccccchHHHHHHHhcCceEEeecccc------ccccccccccc--ccccc-
Confidence 35788999999999999999999999986 3567899999999999998776545 69999999996 56655
Q ss_pred hccCccccccCCCCEEEEeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC
Q 041113 149 ALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH 226 (983)
Q Consensus 149 ~~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~ 226 (983)
.+....+..+++||+||++|+++.+..+..+...+.+ .++||||.|+.+++++ +.++.+++|++.+|++|.+.+..+
T Consensus 74 ~~~~~~~~~l~~aDlil~lG~~l~~~~~~~~~~~~~~~~~ii~v~~d~~~~~~~-~~~~~i~~D~~~~l~~L~~~l~~~ 151 (160)
T d1q6za1 74 AGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARA-PMGDAIVADIGAMASALANLVEES 151 (160)
T ss_dssp SCHHHHHHHHTTCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHHHHHHC-SSSEEEESCHHHHHHHHHHHSCCC
T ss_pred cCcHHHHHHHhcCCeEEEEecccccccccccccccccCceEEEeeCCHHHhCCC-CCCeeEEeCHHHHHHHHHHhcccc
Confidence 3444566778999999999999876554333333333 3699999999988764 578899999999999999988643
|
| >d1sjda2 d.54.1.1 (A:1-125) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=99.74 E-value=1.3e-18 Score=162.52 Aligned_cols=120 Identities=26% Similarity=0.274 Sum_probs=92.5
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC---cCcccHHHHHHHHH-HHHhHh
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQLR-FLLHFM 568 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~---~~~~~~~~~~~~l~-~~~~~l 568 (983)
|||++|+++.+++|++.||.++++.+ ..++.++|+|+|++| +||||+.+.+ +..++...+...+. .+.+.+
T Consensus 1 MKI~~i~~~~i~~Pl~~p~~~s~~~~----~~~~~~iv~l~~~~g-~G~Ge~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 75 (125)
T d1sjda2 1 MKLSGVELRRVQMPLVAPFRTSFGTQ----SVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYNDGAEHVLRHYLIPAL 75 (125)
T ss_dssp CCCCEEEEEEEEEEEEEEEEETTEEE----EEEEEEEEEEECSSC-EEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHH
T ss_pred CEEEEEEEEEEeccccCCEEccCceE----eeeeEEEEEEEecCc-eEEEEEEecCccccchhhhhhhhhhhhhccchhh
Confidence 79999999999999999999998765 459999999999888 7999998753 45666665555443 356777
Q ss_pred ccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcC
Q 041113 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILY 628 (983)
Q Consensus 569 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLG 628 (983)
.+.++.+...+. ..+. ....+++|++||||||||+.||..|+|||+|||
T Consensus 76 ~~~~~~~~~~~~---------~~~~--~~~~~~~a~aaid~AlwDl~ak~~~~Pl~~lLG 124 (125)
T d1sjda2 76 LAAEDITAAKVT---------PLLA--KFKGHRMAKGALEMAVLDAELRAHERSFAAELG 124 (125)
T ss_dssp HHSSSCCHHHHH---------HHHT--TSCSCHHHHHHHHHHHHHHHHHHTTCBHHHHHT
T ss_pred cCCCccCHHHHH---------HHHH--HccCCcHHHHHHHHHHHHHHHHHcCCcHHHHhC
Confidence 777665533322 1111 112357899999999999999999999999998
|
| >d1tzza2 d.54.1.1 (A:1006-1145) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.73 E-value=4.5e-18 Score=161.48 Aligned_cols=128 Identities=14% Similarity=0.127 Sum_probs=81.9
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECC-----CCEEEEeecCcCcCcccHHHHHHHHHHHHhH
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLED-----GSVGYGEVAPLEIHKENLLDAEEQLRFLLHF 567 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~-----G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~ 567 (983)
|||++|+ .+++|++.|+.++++++ ..++.++|+|+||+ |.+||||+.+.+.... ......+.|.
T Consensus 1 mkIvdi~--~~~vPl~~p~~~s~~~~----~~~~~~lV~i~Td~G~~G~G~~G~g~~~~~~~~~~-----~~~~~~~~~~ 69 (140)
T d1tzza2 1 VRIVDVR--EITKPISSPIRNAYIDF----TKMTTSLVAVVTDVVREGKRVVGYGFNSNGRYGQG-----GLIRERFASR 69 (140)
T ss_dssp CCEEEEE--EEEEECCC-------------CCCEEEEEEEEEEEECSSSEEEEEEECCTTSCCCH-----HHHHHTHHHH
T ss_pred CeEEEEE--EEEecCCCCccccccee----eceEEEEEEEEEeecccCcceEeeEecCCchhHHH-----HHHHHHHHHH
Confidence 6897776 68899999999998875 34899999999984 4578999876542211 1223467899
Q ss_pred hccCccccccccccc-Cchhhhhhhc----CCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCC
Q 041113 568 MTGAKISYFLPLLKG-SFSSWIWSTL----GIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLT 631 (983)
Q Consensus 568 l~g~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~ 631 (983)
++|+++..+...... ...+..+..+ .....+...+|++|||||||||+||.+|+|||+||||+.
T Consensus 70 lig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~aaiDiAlWDl~gK~~g~Pl~~LLgg~~ 138 (140)
T d1tzza2 70 ILEADPKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAVGTIDMAVWDAVAKIAGKPLFRLLAERH 138 (140)
T ss_dssp HHTSCGGGSBCTTSSSBCHHHHHHHHTTTCCSCCCSHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHT
T ss_pred HhcccHhhHhhhcccccChHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHcCCcHHHHhcccc
Confidence 999987654322211 1122222221 112234456899999999999999999999999999864
|
| >d1bqga2 d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Pseudomonas putida [TaxId: 303]
Probab=99.72 E-value=5.2e-18 Score=159.31 Aligned_cols=125 Identities=18% Similarity=0.034 Sum_probs=90.8
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAK 572 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~ 572 (983)
-||++|++++++.|++.++..+.... ..++.++|||+|++|++||||+.+... ....++.+.+.++|++
T Consensus 3 p~It~ve~~~v~~~~~~~~~~~g~~~----~~~~~~lV~i~td~G~~G~Ge~~~~~~-------~~~~~~~~~~~~ig~~ 71 (132)
T d1bqga2 3 PVITDLKVVPVAGHDSMLLNLSGAHG----PLFTRNILILTDSSGHVGVGEVPGGEG-------IRKTLEDARHLLINQS 71 (132)
T ss_dssp CBEEEEEEEEEEEECCCEEETTEECC----SEEEEEEEEEEETTSCEEEEEEECCHH-------HHHHHHTTHHHHBTCB
T ss_pred CEEEEEEEEEEeccCcccccCCCCCC----CcceEEEEEEEECCCcEEEEEeCCcHh-------HHHHHHHhhhhhcCcC
Confidence 38999999999999998888776543 237789999999999999999986431 2234456788999999
Q ss_pred ccccccccccCchhhhhh-hc----CCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcC
Q 041113 573 ISYFLPLLKGSFSSWIWS-TL----GIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILY 628 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLG 628 (983)
+.++..++..+....... .. .........+|++|||+||||++||.+|+|||+|||
T Consensus 72 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pl~~LLG 132 (132)
T d1bqga2 72 IGNYQSLLNKVRNAFADRDVGGRGLQTFDLRIAVHAVTAVESALLDLLGQHLQVPVAALLG 132 (132)
T ss_dssp GGGHHHHHHHHHHHTCC------------CHHHHHHHHHHHHHHHHHHHHHHTCBGGGGST
T ss_pred hHHHHHHHHHHHHHhcccCcccccccccccchHHHHHHHHHHHHHHHHHHHcCCcHHHHcC
Confidence 887655543221111000 00 001123467899999999999999999999999998
|
| >d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=99.64 E-value=1.2e-16 Score=151.03 Aligned_cols=134 Identities=10% Similarity=-0.057 Sum_probs=89.6
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCcc
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKI 573 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~~ 573 (983)
+|++|+++.+++|+..+...+...+ +......++|+|+|++|..|+||+...... ..........+.+.|.++|+++
T Consensus 2 tI~~v~~~~~r~P~~~~~~~s~a~~--~~~~~~~~~V~i~td~g~~g~G~~~~~~~~-~~~~~~~~~~~~l~p~liG~~~ 78 (139)
T d1yeya2 2 TIIALETHDVRFPTSRELDGSDAMN--PDPDYSAAYVVLRTDGAEDLAGYGLVFTIG-RGNDVQTAAVAALAEHVVGLSV 78 (139)
T ss_dssp BEEEEEEEEEECCGGGCC------C--CSCCCEEEEEEEEESSCTTCEEEEEEEECS-TTHHHHHHHHHTTHHHHTTCBH
T ss_pred eEEEEEEEEEEccCccCCCCcCCcc--cCCCcceeEEEEEECCCCcEEEEEEEecCC-ChHHHHHHHHHHHHHHhhCCCc
Confidence 6999999999999998874332221 112366899999999988888887654321 1122233445679999999999
Q ss_pred cccccccccCchhhh---hhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCC
Q 041113 574 SYFLPLLKGSFSSWI---WSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPL 630 (983)
Q Consensus 574 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~ 630 (983)
.+++.++...+.... .........+...+|++|||+||||++||.+|+|||+|||+-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saIDiALWDl~gK~~~~Pl~~LL~~~ 138 (139)
T d1yeya2 79 DKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAEL 138 (139)
T ss_dssp HHHHHCHHHHHHHHHTCHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHHTS
T ss_pred ccHHHHHHHHHHHhcccccccccCCcchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhhhc
Confidence 876655433211100 000111223456789999999999999999999999999874
|
| >d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: ACDE2-like domain: Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.59 E-value=8.9e-16 Score=147.48 Aligned_cols=138 Identities=15% Similarity=0.184 Sum_probs=100.5
Q ss_pred hhhHHHHHHHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccc-----cCccchhhhhhhhhhccccccccchh
Q 041113 73 YCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADIL-----SGLRLRKLLASFLETEQNILFLDHLD 147 (983)
Q Consensus 73 ~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~-----sg~~~~~~kg~~~~~hp~~~~~g~~g 147 (983)
-+.+++++++|++||||+|++|+|+.. +..++.++++++++||++|.. .| ||++|++||++ +|.+|
T Consensus 6 ~e~~~~~a~~i~~AkrPvii~G~g~~~-~~~e~~~~~~~~~ipv~~T~~~~~~~~g------kg~~~~~~~~~--~G~~g 76 (158)
T d1ytla1 6 LEKGKPVANMIKKAKRPLLIVGPDMTD-EMFERVKKFVEKDITVVATGSAITRFID------AGLGEKVNYAV--LHELT 76 (158)
T ss_dssp CCCHHHHHHHHHHCSSEEEEECSCCCH-HHHHHHHHHHTSSSEEEEETTHHHHHHH------TTCGGGSEEEC--HHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChHH-hHHHHHHHHHHhCcCEEecccccccccc------cCCCCCCCccc--ccccc
Confidence 357889999999999999999999874 355789999999999999852 14 79999999996 78888
Q ss_pred hhccCcccccc---CCCCEEEEeCCccccHHH-HHHHHhcCCc-eEEEEcCCCCCCCCCCCeeE-EEEcCHHHHHHHHHh
Q 041113 148 HALLSESVKDW---IQFDVIIQIGSRITSKRI-SQMIEECFPC-TYILVDNHPCRHDPSHSVTH-RIQSTIVQFVDFLLK 221 (983)
Q Consensus 148 ~~~~~~~~~~~---~~aDlvl~iG~~~~~~~~-~~~~~~~~~~-~~i~id~d~~~~~~~~~~~~-~i~~d~~~~l~~L~~ 221 (983)
.++..+++..+ .+|||||++|+++....+ .+....+.+. ++|+||.+... +..... .+..+..+++++|.+
T Consensus 77 ~~g~~~~n~a~~~~~~aDLvi~iG~~~~~~~~~~~~~~~~~~~~k~I~Id~~~~~---~~~~~~~~l~~~~~~~~~~L~~ 153 (158)
T d1ytla1 77 QFLLDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAIDRYYHP---NADMSFGNLWKKEEDYLKLLDE 153 (158)
T ss_dssp HHHHSTTCCCTTSSCCCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEECSSSCCT---TSSEECCCCGGGHHHHHHHHHH
T ss_pred ccCcHHHHHHhhcccCcCEEEEECCcccchhhccccccccCCCCeEEEEcCCccc---cccccchhhhhhHHHHHHHHHH
Confidence 88887766544 599999999999853322 2333445544 57888766432 222111 234566677777655
Q ss_pred c
Q 041113 222 V 222 (983)
Q Consensus 222 ~ 222 (983)
.
T Consensus 154 l 154 (158)
T d1ytla1 154 I 154 (158)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Probab=98.91 E-value=2.9e-09 Score=115.09 Aligned_cols=149 Identities=16% Similarity=0.149 Sum_probs=106.2
Q ss_pred ecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhh-ccch-HHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLH-DTNG-LAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~-~~~e-L~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
+..+..|. ++|-|+|+|++. +.-++|++|||+.-- .+.| |-.+.- +++|+++||-||+ |++--.
T Consensus 136 ~~~~ivg~--~~p~a~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~--~~lPvifv~eNN~-~aist~---- 206 (362)
T d1umda_ 136 TVASPIAS--HVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAV--QGAPAVFIAENNF-YAISVD---- 206 (362)
T ss_dssp CCCSSTTT--THHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHH--TTCSEEEEEEECS-EETTEE----
T ss_pred cccccccc--cchHHHHHHHhhhcccccceeeeeccCCcccCCchHHHHHHhhh--ccCCeeeeeeecc-cccccc----
Confidence 33455566 999999999984 578999999999853 1233 333333 8999977777765 776421
Q ss_pred CCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHh----hhccCCCEEEEEEcCc-------c----
Q 041113 391 DRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSM----SQHLGTDRVIEVESCI-------D---- 453 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~----a~~~~~p~lIeV~~~~-------~---- 453 (983)
... .....++.+.|++||+++.+|+ ++.++.+++++ +.+.+||++||+.|.+ +
T Consensus 207 -------~~~---~~~~~~~~~~a~~~gi~~~~vDGnDv~~v~~a~~~Ai~~~R~g~gP~lIE~~tyR~~gHs~~Dd~~~ 276 (362)
T d1umda_ 207 -------YRH---QTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSR 276 (362)
T ss_dssp -------HHH---HCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGG
T ss_pred -------ccc---ccccchhhhhhhhheeeeeEeccchHHHHHHHHHHHHHHHHhcCCCEEEEcccccccCCCccccchh
Confidence 110 0134578899999999999998 56555555554 4556899999999987 0
Q ss_pred ----------------------------cchHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 454 ----------------------------ANATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 454 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
-+...+..+..++.+.+.+|+.++.+++.|+.
T Consensus 277 YR~~~Ei~~w~~~DPi~~~~~~L~~~g~~se~e~~~i~~ei~~~V~~a~~~A~~~p~P~~ 336 (362)
T d1umda_ 277 YRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPP 336 (362)
T ss_dssp TSCHHHHHHHHTTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCBCCG
T ss_pred hcchhhhHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 12445556778888889999999999988876
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.85 E-value=7.4e-09 Score=111.75 Aligned_cols=149 Identities=16% Similarity=0.153 Sum_probs=107.1
Q ss_pred ecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhh-cc-chHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLH-DT-NGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~-~~-~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
+..+.+|. .+|.|+|+++|. ++.|+|++|||+..- .+ -.|-.|+- +++|+++||-|| +|++--..
T Consensus 136 ~~~~ivG~--~~p~AvG~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~--~~lPvlfv~eNN-~~aist~~--- 207 (365)
T d1w85a_ 136 PPQIIIGA--QYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGA--FKAPAIFVVQNN-RFAISTPV--- 207 (365)
T ss_dssp CCCCSTTH--HHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHH--TTCCEEEEEEEC-SEETTEEG---
T ss_pred ccccccCc--cccchhhHHhhhhhcccCCceeeeccCCcccchhHHHHHHHhhh--cccCceEEEEEe-cccccccc---
Confidence 44466677 999999999985 578999999999742 22 33444444 899997777776 56654210
Q ss_pred CCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhh----ccCCCEEEEEEcCcc-------c---
Q 041113 391 DRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQ----HLGTDRVIEVESCID-------A--- 454 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~----~~~~p~lIeV~~~~~-------~--- 454 (983)
.. .....++..-+.+||+++++|+ ++.++.+++++|. +.+||+|||+.|.+- +
T Consensus 208 -------~~----~~~~~~~~~r~~~~Gi~~~~vDG~D~~~v~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~dd~~~ 276 (365)
T d1w85a_ 208 -------EK----QTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPT 276 (365)
T ss_dssp -------GG----TCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC---
T ss_pred -------cc----cccccchhhhcccccCceEEEecchhHHHHHHHHHHHHHhhcCCccEEEEeecccccccCCcCCccc
Confidence 00 0123567888999999999998 5666666666554 457999999999871 0
Q ss_pred ------------------------------chHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 455 ------------------------------NATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 455 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
+...+..+.+++.+.+..|+.++.++|.|+.
T Consensus 277 ~YR~~eEi~~w~~~DPI~~~~~~L~~~g~~~~~el~~i~~e~~~eV~~A~~~A~~sP~P~~ 337 (365)
T d1w85a_ 277 RYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKV 337 (365)
T ss_dssp ---CHHHHHHHHTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCCH
T ss_pred ccCChHHHHHHHhCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 2344556778888899999999999999875
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=98.82 E-value=1.8e-09 Score=120.31 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=59.5
Q ss_pred cccccccccccccceeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCC-------CEE
Q 041113 895 INNDVICKTSMEEQVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGS-------ARC 967 (983)
Q Consensus 895 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~-------~~v 967 (983)
-++...+..... +...++++++..+|| .....+.++ ++||||+|||++++..|..+++.|++. |+|
T Consensus 70 ~dw~~~e~~ln~--~~~f~~~i~G~~iHf--~h~~~~~~~---~~pLlLlHG~P~s~~~w~~vi~~La~~g~~~~~~f~V 142 (394)
T d1qo7a_ 70 FDWRPFEARLNS--FPQFTTEIEGLTIHF--AALFSERED---AVPIALLHGWPGSFVEFYPILQLFREEYTPETLPFHL 142 (394)
T ss_dssp CCHHHHHHHHTT--SCEEEEEETTEEEEE--EEECCSCTT---CEEEEEECCSSCCGGGGHHHHHHHHHHCCTTTCCEEE
T ss_pred CCHHHHHHHHHc--CCCeEEEECCEEEEE--EEEeccCCC---CCEEEEeccccccHHHHHHHHHhhccccCCcccceee
Confidence 344444555554 555556666555444 222333333 799999999999999999999999864 999
Q ss_pred EEEcCCCCCCCCCCC
Q 041113 968 ISIDLPGHGGSKMQN 982 (983)
Q Consensus 968 i~~Dl~G~G~S~~~~ 982 (983)
|+|||||||.|++|.
T Consensus 143 IaPDLpG~G~S~~P~ 157 (394)
T d1qo7a_ 143 VVPSLPGYTFSSGPP 157 (394)
T ss_dssp EEECCTTSTTSCCCC
T ss_pred ecccccccCCCCCCC
Confidence 999999999999874
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=98.82 E-value=9.5e-10 Score=115.51 Aligned_cols=64 Identities=25% Similarity=0.401 Sum_probs=54.2
Q ss_pred eEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 910 LRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
+.+.+++++..++ |...|+ +|||||+||+++++..|..+++.|+++|+||++|+||||.|+++.
T Consensus 9 ~~~fi~~~g~~i~----y~~~G~-----g~~vvllHG~~~~~~~~~~~~~~L~~~~~vi~~Dl~G~G~S~~~~ 72 (298)
T d1mj5a_ 9 EKKFIEIKGRRMA----YIDEGT-----GDPILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLD 72 (298)
T ss_dssp CCEEEEETTEEEE----EEEESC-----SSEEEEECCTTCCGGGGTTTGGGGTTSSEEEEECCTTSTTSCCCS
T ss_pred CCEEEEECCEEEE----EEEEcC-----CCcEEEECCCCCCHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCCc
Confidence 4567777665444 466776 789999999999999999999999999999999999999998753
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=98.78 E-value=1.2e-09 Score=115.44 Aligned_cols=68 Identities=18% Similarity=0.072 Sum_probs=54.9
Q ss_pred eeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 909 VLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
.++..+++.. | ++++|...|+++ +|||||||||++++..|..+...|+++|+||++|+||||.|+++.
T Consensus 11 ~~~~~v~~~d-G--~~i~y~~~G~~~---g~pvvllHG~~~~~~~w~~~~~~l~~~~~vi~~D~rG~G~S~~~~ 78 (313)
T d1wm1a_ 11 YDSGWLDTGD-G--HRIYWELSGNPN---GKPAVFIHGGPGGGISPHHRQLFDPERYKVLLFDQRGCGRSRPHA 78 (313)
T ss_dssp SEEEEEECSS-S--CEEEEEEEECTT---SEEEEEECCTTTCCCCGGGGGGSCTTTEEEEEECCTTSTTCBSTT
T ss_pred CcCCEEEeCC-C--cEEEEEEecCCC---CCeEEEECCCCCcccchHHHHHHhhcCCEEEEEeCCCcccccccc
Confidence 4555666532 2 345557777654 899999999999999999999999999999999999999998653
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=98.77 E-value=2.3e-09 Score=112.83 Aligned_cols=68 Identities=29% Similarity=0.416 Sum_probs=56.6
Q ss_pred ceeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 908 QVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
..+.+.+++++..+ +|...|+.+ +|+|||+||+++++..|..+++.|+++|+||++|+||||+|+++.
T Consensus 6 p~~~~~i~~~g~~i----~y~~~G~~~---~p~lvllHG~~~~~~~~~~~~~~L~~~~~vi~~d~~G~G~S~~~~ 73 (291)
T d1bn7a_ 6 PFDPHYVEVLGERM----HYVDVGPRD---GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD 73 (291)
T ss_dssp CCCCEEEEETTEEE----EEEEESCSS---SSCEEEECCTTCCGGGGTTTHHHHTTTSCEEEECCTTSTTSCCCS
T ss_pred CCCCeEEEECCEEE----EEEEeCCCC---CCeEEEECCCCCCHHHHHHHHHHHhcCCEEEEEeCCCCccccccc
Confidence 35567777765444 446667654 899999999999999999999999999999999999999998764
|
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=2.5e-08 Score=108.55 Aligned_cols=149 Identities=17% Similarity=0.183 Sum_probs=103.1
Q ss_pred ecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhh-ccch-HHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLH-DTNG-LAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~-~~~e-L~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
+..+..|. .+|.|+|+++|. ++-++|++|||++.- .+.| |-.|+- +++|+++||-|| +|++-...
T Consensus 154 ~~~~ivg~--~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~--~~lPvlfv~eNN-~yaist~~--- 225 (395)
T d2bfda1 154 TISSPLAT--QIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAAT--LECPIIFFCRNN-GYAISTPT--- 225 (395)
T ss_dssp CCCSSTTT--HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHH--TTCCEEEEEEEC-SEETTEEG---
T ss_pred cccccccc--cccHHHHHHHHhhhcCcccccccccCCCCccchhHHHHHHHHhh--cCCceEEEEEec-cccccccc---
Confidence 33455666 999999999985 577999999999853 1223 333333 799997666555 56664211
Q ss_pred CCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhh----ccCCCEEEEEEcCcc-----------
Q 041113 391 DRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQ----HLGTDRVIEVESCID----------- 453 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~----~~~~p~lIeV~~~~~----------- 453 (983)
.. .....++.+.|++||+++.+|+ ++.++.++++++. +.++|++||+.|.+-
T Consensus 226 -------~~----~~~~~~i~~ra~~~gi~~~~vDG~Dv~aV~~a~~~A~~~~R~g~gP~lIE~~TyR~~~Hs~~DD~~~ 294 (395)
T d2bfda1 226 -------SE----QYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSA 294 (395)
T ss_dssp -------GG----TCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC------
T ss_pred -------ch----hhcchhHHHhhhccccceeEEecCcHHHHHHHHHHhhhhhhccCCceEEEEeeecCCCCCCcCCccc
Confidence 00 1134578899999999999998 6777766666654 468999999999871
Q ss_pred -------------c----------------chHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 454 -------------A----------------NATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 454 -------------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
+ ....+..+.+++.+.+.+|+.++.+++.|+.
T Consensus 295 YR~~~Ei~~w~k~DdPi~~~~~~Li~~g~~s~ee~~~i~~e~~~eV~~A~~~A~~~p~P~~ 355 (395)
T d2bfda1 295 FRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNP 355 (395)
T ss_dssp -------------CCHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCBCCG
T ss_pred ccCHHHHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 0 1233445666777778888888888887765
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Probab=98.73 E-value=4.2e-08 Score=106.76 Aligned_cols=145 Identities=15% Similarity=0.103 Sum_probs=98.5
Q ss_pred ecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhhc-cchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLHD-TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD 391 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~ 391 (983)
+..|.+|. ++|-|+|+++|. ++-|||++|||+.--. +.|-.+.+. -+++||++||-|| +|+|-...
T Consensus 178 ~~s~~vg~--q~p~AvG~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~-~~~lPvifv~eNN-~~aist~~---- 249 (407)
T d1qs0a_ 178 TISGNLAT--QFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAH-VYRAPVILNVVNN-QWAISTFQ---- 249 (407)
T ss_dssp CCCSSSSH--HHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHH-HHTCCEEEEEEEC-SEETTEEG----
T ss_pred cccccccc--ccchhhhhHHHHhhccCcceecccccccccccchHHHHHHHHh-ccCcceEEEEEEe-cccccccc----
Confidence 33455666 999999999985 5789999999996431 233223332 2799997666666 46654210
Q ss_pred CCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHh----hhccCCCEEEEEEcCc------c------
Q 041113 392 RTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSM----SQHLGTDRVIEVESCI------D------ 453 (983)
Q Consensus 392 ~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~----a~~~~~p~lIeV~~~~------~------ 453 (983)
.. .+....++...+++||+++++|+ +..++.+++++ +.+.+||+|||+.|.+ .
T Consensus 250 ------~~---~~~~~~~~~~ra~~~Gi~~~~VDGnD~~avy~a~~~A~e~aR~g~gP~lIE~~TyR~~gHs~sDD~~~Y 320 (407)
T d1qs0a_ 250 ------AI---AGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKY 320 (407)
T ss_dssp ------GG---GTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGT
T ss_pred ------hh---hhccchhHHHHHHhcCcceEEeccccHHHHHHHHHHHHHHHhcCCCceEEEEeeecCCCCCcccccccc
Confidence 00 01123468899999999999998 55555555554 4456899999999987 0
Q ss_pred ---------------------------cchHHHHHHHHHHHHHHHHHHhhhhc
Q 041113 454 ---------------------------ANATFHSMLRKFARQSADHTLNVLSQ 479 (983)
Q Consensus 454 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (983)
-+...+.++.+++++.+..|++++++
T Consensus 321 R~~~E~~~w~~~DPI~rl~~~Li~~g~~se~e~~~i~~ei~~eV~~A~~~Ae~ 373 (407)
T d1qs0a_ 321 RPADDWSHFPLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQ 373 (407)
T ss_dssp SCTTHHHHCTTCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 02344556778888889999998875
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=98.71 E-value=7.4e-09 Score=108.81 Aligned_cols=64 Identities=25% Similarity=0.414 Sum_probs=52.8
Q ss_pred eeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 909 VLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
++..++++++..+ +|...|+ +|+|||+||+++++..|..+++.|+++|+||++|+||||.|+.+
T Consensus 8 ~~~~~~~~~~~~l----~y~~~G~-----gp~vv~lHG~~~~~~~~~~~~~~l~~~~~vi~~D~~G~G~s~~~ 71 (293)
T d1ehya_ 8 FKHYEVQLPDVKI----HYVREGA-----GPTLLLLHGWPGFWWEWSKVIGPLAEHYDVIVPDLRGFGDSEKP 71 (293)
T ss_dssp SCEEEEECSSCEE----EEEEEEC-----SSEEEEECCSSCCGGGGHHHHHHHHTTSEEEEECCTTSTTSCCC
T ss_pred CcceEEEECCEEE----EEEEECC-----CCeEEEECCCCCCHHHHHHHHHHHhcCCEEEEecCCcccCCccc
Confidence 4555665654433 3456665 78999999999999999999999999999999999999999864
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1.4e-08 Score=108.54 Aligned_cols=66 Identities=20% Similarity=0.333 Sum_probs=53.5
Q ss_pred eeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCCC
Q 041113 909 VLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~~ 982 (983)
+.+.++++..+ .+++|...|+ +|+|||+||+++++..|+.+++.|.+ +|+||++|+||||+|+.+.
T Consensus 11 ~~~~~v~~~~g---~~i~y~~~G~-----gp~vlllHG~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~~ 77 (322)
T d1zd3a2 11 MSHGYVTVKPR---VRLHFVELGS-----GPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPP 77 (322)
T ss_dssp SEEEEEEEETT---EEEEEEEECC-----SSEEEEECCTTCCGGGGTTHHHHHHHTTCEEEEEECTTSTTSCCCS
T ss_pred CceeEEEECCC---CEEEEEEEcC-----CCeEEEECCCCCCHHHHHHHHHHHHHCCCEEEEecccccccccccc
Confidence 55666666432 2445567775 78999999999999999999999975 5999999999999998764
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=98.63 E-value=6.3e-09 Score=94.10 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=41.9
Q ss_pred EEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 912 YQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
-.+++++..+ +|...|+ +||||||||. ...|. +.|+++|+||++|+||||+|+++.
T Consensus 4 ~~~~~~G~~l----~y~~~G~-----G~pvlllHG~---~~~w~---~~L~~~yrvi~~DlpG~G~S~~p~ 59 (122)
T d2dsta1 4 GYLHLYGLNL----VFDRVGK-----GPPVLLVAEE---ASRWP---EALPEGYAFYLLDLPGYGRTEGPR 59 (122)
T ss_dssp EEEEETTEEE----EEEEECC-----SSEEEEESSS---GGGCC---SCCCTTSEEEEECCTTSTTCCCCC
T ss_pred eEEEECCEEE----EEEEEcC-----CCcEEEEecc---ccccc---ccccCCeEEEEEeccccCCCCCcc
Confidence 3455555444 4477786 7899999994 34554 558889999999999999998763
|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=9.2e-08 Score=103.21 Aligned_cols=145 Identities=12% Similarity=0.131 Sum_probs=96.0
Q ss_pred CCCCccchHHHHHhhhhcc-----CceEEEEEccchhhh-ccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCC
Q 041113 321 GASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLH-DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTE 394 (983)
Q Consensus 321 G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~-~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~ 394 (983)
+..|- .+|.|+|+|+|. ++-|+|++|||+.-- .+.|-...+. .+++|+++||-|| +|++....
T Consensus 136 ~ivg~--~~p~A~G~A~a~k~~~~~~v~~~~~GDGa~~eG~f~Ealn~A~-~~~lPvifv~eNN-~yaist~~------- 204 (361)
T d2ozla1 136 GIVGA--QVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAA-LWKLPCIFICENN-RYGMGTSV------- 204 (361)
T ss_dssp CSTTT--HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHH-HTTCCEEEEEEEC-SEETTEEH-------
T ss_pred ccccc--cchhHHHHHHHhhhccCCCeEEEEecCCCccCcchhhhhhhhh-hccCceEEEEEeC-CcccCCCc-------
Confidence 44555 999999999994 678999999999854 2333333332 2899987776666 56664211
Q ss_pred ccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhh----hccCCCEEEEEEcCcc---------------
Q 041113 395 PRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMS----QHLGTDRVIEVESCID--------------- 453 (983)
Q Consensus 395 ~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a----~~~~~p~lIeV~~~~~--------------- 453 (983)
... ....+... +++|+.+.+|+ ++.++.++++++ .+.+||+|||+.|.+.
T Consensus 205 ----~~~---~~~~~~~~--~~~~~~~~~vdGnD~~av~~a~~~A~~~~R~g~gP~liE~~TyR~~gHs~~D~~~~YR~~ 275 (361)
T d2ozla1 205 ----ERA---AASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTR 275 (361)
T ss_dssp ----HHH---CSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCH
T ss_pred ----hhc---cccccccc--cccccceEEeccCCchHHHHHHHHHHHHHhccCCCEEEEEeeecCCCCcccccccccCCH
Confidence 000 01223322 46678888887 455555555544 4568999999999870
Q ss_pred -------------------------cchHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 454 -------------------------ANATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 454 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
-+...+..+..++.+.+.+|+.++.+++.|+.
T Consensus 276 ~Ei~~~~~k~DPi~~~~~~Li~~g~~se~e~~~i~~ei~~~V~~A~~~A~~sp~P~~ 332 (361)
T d2ozla1 276 EEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPL 332 (361)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHSCCCCG
T ss_pred HHHHhhhhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 01233445667777889999999999998865
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=98.63 E-value=1.3e-08 Score=105.81 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=47.9
Q ss_pred EEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChh---hHHHHHHHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 912 YQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGE---EWIPIMKAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~---~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
+.+++++..+ +|...|+ |||||||||++.++. .|..+++.|+++|+|+++|+||||.|+.+.
T Consensus 6 ~~i~~~G~~~----~Y~~~G~-----G~pvvllHG~~~~~~~~~~~~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 70 (271)
T d1uk8a_ 6 KSILAAGVLT----NYHDVGE-----GQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPE 70 (271)
T ss_dssp EEEEETTEEE----EEEEECC-----SSEEEEECCCSTTCCHHHHHTTTHHHHTTTSEEEEECCTTSTTSCCCT
T ss_pred CEEEECCEEE----EEEEEee-----CCeEEEECCCCCCccHHHHHHHHHHHHhCCCEEEEEeCCCCCCccccc
Confidence 3444554433 3467776 789999999987654 467789999999999999999999998653
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=98.62 E-value=2.8e-08 Score=103.52 Aligned_cols=57 Identities=23% Similarity=0.396 Sum_probs=48.7
Q ss_pred ceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHh-hCCCEEEEEcCCCCCCCCCCC
Q 041113 921 FCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAV-SGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 921 ~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l-~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
....++|...|+ ||||||+||++.++..|..++..| +++|+|+++|+||||.|+++.
T Consensus 11 ~~v~i~y~~~G~-----g~~illlHG~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~ 68 (279)
T d1hkha_ 11 TPIELYYEDQGS-----GQPVVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSKVN 68 (279)
T ss_dssp EEEEEEEEEESS-----SEEEEEECCTTCCGGGGHHHHHHHHHTTEEEEEECCTTSTTSCCCS
T ss_pred CeEEEEEEEEcc-----CCeEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEechhhCCccccc
Confidence 334566777886 789999999999999999999776 677999999999999998753
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=98.61 E-value=1.6e-08 Score=104.77 Aligned_cols=63 Identities=19% Similarity=0.361 Sum_probs=49.7
Q ss_pred EEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChh---hHHHHHHHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 911 RYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGE---EWIPIMKAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~---~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
.+.+++++. +++|...|+ +|||||+||++++.. .|..+++.|+++|+|+++|+||||.|+.+.
T Consensus 4 ~~~~~~dg~----~l~y~~~G~-----g~~vvllHG~~~~~~~~~~~~~~~~~l~~~~~v~~~D~~G~G~S~~~~ 69 (268)
T d1j1ia_ 4 ERFVNAGGV----ETRYLEAGK-----GQPVILIHGGGAGAESEGNWRNVIPILARHYRVIAMDMLGFGKTAKPD 69 (268)
T ss_dssp EEEEEETTE----EEEEEEECC-----SSEEEEECCCSTTCCHHHHHTTTHHHHTTTSEEEEECCTTSTTSCCCS
T ss_pred CeEEEECCE----EEEEEEEcC-----CCeEEEECCCCCCccHHHHHHHHHHHHhcCCEEEEEcccccccccCCc
Confidence 455665443 334467776 789999999997654 588899999999999999999999998753
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=98.59 E-value=2e-08 Score=103.85 Aligned_cols=53 Identities=30% Similarity=0.451 Sum_probs=46.3
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~~ 982 (983)
++|...|+ +|||||+||+++++..|..+++.|.+ +|+||++|+||||.|+.+.
T Consensus 11 l~y~~~G~-----g~~vv~lHG~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~ 64 (271)
T d1va4a_ 11 IYFKDWGS-----GKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPW 64 (271)
T ss_dssp EEEEEESS-----SSEEEEECCTTCCGGGGHHHHHHHHTTTCEEEEECCTTSTTSCCCS
T ss_pred EEEEEEcC-----CCeEEEECCCCCCHHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence 34566776 78999999999999999999999976 5999999999999998753
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=98.59 E-value=9.7e-09 Score=110.00 Aligned_cols=67 Identities=19% Similarity=0.176 Sum_probs=53.5
Q ss_pred eeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 909 VLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
.+...+.+... ++++|...|++. +|||||+|||++++..|..+...++++|+||++|+||||.|+++
T Consensus 11 ~~~~~i~~~dg---~~i~y~~~G~~~---g~pvvllHG~~g~~~~~~~~~~~l~~~~~Vi~~D~rG~G~S~~~ 77 (313)
T d1azwa_ 11 YQQGSLKVDDR---HTLYFEQCGNPH---GKPVVMLHGGPGGGCNDKMRRFHDPAKYRIVLFDQRGSGRSTPH 77 (313)
T ss_dssp SEEEEEECSSS---CEEEEEEEECTT---SEEEEEECSTTTTCCCGGGGGGSCTTTEEEEEECCTTSTTSBST
T ss_pred CCCCEEEeCCC---cEEEEEEecCCC---CCEEEEECCCCCCccchHHHhHHhhcCCEEEEEeccccCCCCcc
Confidence 45666666433 244556777654 89999999999999999988877888999999999999999865
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=98.59 E-value=2.9e-08 Score=103.12 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=48.3
Q ss_pred eeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhh-CCCEEEEEcCCCCCCCCCCC
Q 041113 922 CSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVS-GSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 922 ~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~-~~~~vi~~Dl~G~G~S~~~~ 982 (983)
...++|...|+ ||||||+||+++++..|+.+++.|. ++|+||++|+||||.|+++.
T Consensus 12 ~v~i~y~~~G~-----G~~ivllHG~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~ 68 (277)
T d1brta_ 12 SIDLYYEDHGT-----GQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPT 68 (277)
T ss_dssp EEEEEEEEECS-----SSEEEEECCTTCCGGGGHHHHHHHHHTTCEEEEECCTTSTTSCCCS
T ss_pred cEEEEEEEEcc-----CCeEEEECCCCCCHHHHHHHHHHHHhCCCEEEEEeCCCCCcccccc
Confidence 35566778886 7899999999999999999998885 56999999999999998653
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=98.58 E-value=3.4e-08 Score=102.44 Aligned_cols=56 Identities=29% Similarity=0.375 Sum_probs=47.6
Q ss_pred EEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHh-hCCCEEEEEcCCCCCCCCCCC
Q 041113 924 FIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAV-SGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 924 ~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l-~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
+++|...|+.+ +|||||+||+++++..|..+++.| +++|+||++|+||||.|+.+.
T Consensus 10 ~l~y~~~G~~~---~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~s~~~~ 66 (275)
T d1a88a_ 10 NIFYKDWGPRD---GLPVVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQPS 66 (275)
T ss_dssp EEEEEEESCTT---SCEEEEECCTTCCGGGGHHHHHHHHHTTCEEEEECCTTSTTSCCCS
T ss_pred EEEEEEecCCC---CCeEEEECCCCCCHHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence 44556777654 899999999999999999999988 556999999999999998753
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=98.58 E-value=3e-08 Score=102.80 Aligned_cols=54 Identities=26% Similarity=0.393 Sum_probs=46.5
Q ss_pred EEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhh-CCCEEEEEcCCCCCCCCCCC
Q 041113 924 FIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVS-GSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 924 ~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~-~~~~vi~~Dl~G~G~S~~~~ 982 (983)
+++|...|+ +|||||+||+++++..|..+++.|. ++|+|+++|+||||.|+.+.
T Consensus 10 ~i~y~~~G~-----g~pvvllHG~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~ 64 (273)
T d1a8sa_ 10 QIYYKDWGS-----GQPIVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRSSQPW 64 (273)
T ss_dssp EEEEEEESC-----SSEEEEECCTTCCGGGGHHHHHHHHHTTCEEEEECCTTSTTSCCCS
T ss_pred EEEEEEECC-----CCeEEEECCCCCCHHHHHHHHHHHHhCCCEEEEEechhcCcccccc
Confidence 344566776 7899999999999999999999885 56999999999999998763
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=98.58 E-value=2.9e-08 Score=103.84 Aligned_cols=62 Identities=23% Similarity=0.351 Sum_probs=48.5
Q ss_pred EEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChh---hHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 915 NVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGE---EWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 915 ~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~---~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
++...++.. ++...|+++ +|+||||||++++.. .|..+++.|+++|+||++|+||||.|+.+
T Consensus 8 ~~~~~~~~~--h~~~~G~~~---~p~ivllHG~~~~~~~~~~~~~~~~~L~~~~~vi~~D~~G~G~S~~~ 72 (281)
T d1c4xa_ 8 RFPSGTLAS--HALVAGDPQ---SPAVVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFGQSEYP 72 (281)
T ss_dssp EECCTTSCE--EEEEESCTT---SCEEEEECCCSTTCCHHHHHGGGHHHHHTTSEEEEECCTTSTTSCCC
T ss_pred EEccCCEEE--EEEEEecCC---CCEEEEECCCCCCCcHHHHHHHHHHHHhCCCEEEEEeCCCCcccccc
Confidence 344444433 346667655 899999999987553 58889999999999999999999999865
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=2.3e-08 Score=100.48 Aligned_cols=68 Identities=26% Similarity=0.398 Sum_probs=49.6
Q ss_pred EEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHH--HHHHhhCC-CEEEEEcCCCCCCCCCCC
Q 041113 911 RYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIP--IMKAVSGS-ARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~--~~~~l~~~-~~vi~~Dl~G~G~S~~~~ 982 (983)
..++.+++..++|+......++ .+|+|||+||+++++..|+. +++.|++. |+|+++|+||||+|+.+.
T Consensus 8 e~~i~v~G~~i~y~~~~~~~~~----~~~~vvllHG~~~~~~~w~~~~~~~~la~~gy~via~D~~G~G~S~~~~ 78 (208)
T d1imja_ 8 EGTIQVQGQALFFREALPGSGQ----ARFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEAA 78 (208)
T ss_dssp CCCEEETTEEECEEEEECSSSC----CSCEEEECCCTTCCHHHHHHHTHHHHHHHTTCEEEEECCTTSGGGTTSC
T ss_pred EEEEEECCEEEEEEEecCCCCC----CCCeEEEECCCCCChhHHhhhHHHHHHHHcCCeEEEeecccccCCCCCC
Confidence 3455666655555322222222 26899999999999999987 46778765 999999999999998653
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=98.57 E-value=2e-08 Score=102.72 Aligned_cols=45 Identities=29% Similarity=0.854 Sum_probs=39.8
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~~ 982 (983)
+|+||||||+++++..|.++++.|++ +|+||++|+||||.|+.+.
T Consensus 16 ~P~ivllHG~~~~~~~~~~~~~~L~~~g~~vi~~Dl~G~G~s~~~~ 61 (264)
T d1r3da_ 16 TPLVVLVHGLLGSGADWQPVLSHLARTQCAALTLDLPGHGTNPERH 61 (264)
T ss_dssp BCEEEEECCTTCCGGGGHHHHHHHTTSSCEEEEECCTTCSSCC---
T ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence 68999999999999999999999976 5999999999999998653
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=98.55 E-value=5.2e-08 Score=101.91 Aligned_cols=68 Identities=25% Similarity=0.285 Sum_probs=53.0
Q ss_pred eEEEEEEcccCc-eeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHH----HHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 910 LRYQLNVNSKDF-CSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIM----KAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 910 ~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~----~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
+++.++++..++ .++++|...|+ |||||||||++.++..|..+. ..+.++|+|+++|+||||.|..+.
T Consensus 6 ~~~~~~~~~~~~~~~~i~y~~~G~-----G~~ivllHG~~~~~~~~~~~~~~l~~~~~~g~~v~~~D~~G~G~S~~~~ 78 (283)
T d2rhwa1 6 TSKFVKINEKGFSDFNIHYNEAGN-----GETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVV 78 (283)
T ss_dssp HEEEEEEEETTEEEEEEEEEEECC-----SSEEEEECCCSTTCCHHHHHTTTHHHHHHTTCEEEEECCTTSTTSCCCC
T ss_pred CCccEEecCCccCCEEEEEEEEcC-----CCeEEEECCCCCChhHHHHHHHHHHHHHHCCCEEEEEeCCCCccccccc
Confidence 355666665433 35667788886 789999999999999998754 445678999999999999998653
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=98.51 E-value=6.1e-08 Score=100.52 Aligned_cols=54 Identities=33% Similarity=0.476 Sum_probs=46.3
Q ss_pred EEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhh-CCCEEEEEcCCCCCCCCCCC
Q 041113 924 FIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVS-GSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 924 ~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~-~~~~vi~~Dl~G~G~S~~~~ 982 (983)
+++|...|+ +|||||+||+++++..|..+++.|. ++|+||++|+||||.|+.+.
T Consensus 10 ~l~y~~~G~-----g~~ivlvHG~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~ 64 (274)
T d1a8qa_ 10 EIFYKDWGQ-----GRPVVFIHGWPLNGDAWQDQLKAVVDAGYRGIAHDRRGHGHSTPVW 64 (274)
T ss_dssp EEEEEEECS-----SSEEEEECCTTCCGGGGHHHHHHHHHTTCEEEEECCTTSTTSCCCS
T ss_pred EEEEEEECC-----CCeEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCCccccccc
Confidence 344566675 7899999999999999999999885 56999999999999998764
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.50 E-value=7.9e-08 Score=101.19 Aligned_cols=55 Identities=20% Similarity=0.287 Sum_probs=45.1
Q ss_pred EEEEeecCCccCCCCceEEEeCCCCCChhhHH-HHHHHhh-CCCEEEEEcCCCCCCCCCC
Q 041113 924 FIKVQEIGQRIDIQDNILLFLHGFLGTGEEWI-PIMKAVS-GSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 924 ~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~-~~~~~l~-~~~~vi~~Dl~G~G~S~~~ 981 (983)
+++|...|++. +|+|||+||++.++..|. .+.+.|. ++|+||++|+||||+|+.+
T Consensus 11 ~i~y~~~G~~~---~p~vvl~HG~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~ 67 (297)
T d1q0ra_ 11 ELWSDDFGDPA---DPALLLVMGGNLSALGWPDEFARRLADGGLHVIRYDHRDTGRSTTR 67 (297)
T ss_dssp EEEEEEESCTT---SCEEEEECCTTCCGGGSCHHHHHHHHTTTCEEEEECCTTSTTSCCC
T ss_pred EEEEEEecCCC---CCEEEEECCCCcChhHHHHHHHHHHHhCCCEEEEEeCCCCcccccc
Confidence 45557777655 899999999999999995 4667665 4699999999999999764
|
| >d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR PP module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI species: Desulfovibrio africanus [TaxId: 873]
Probab=98.48 E-value=1.1e-06 Score=94.63 Aligned_cols=110 Identities=13% Similarity=0.046 Sum_probs=82.5
Q ss_pred ceEEEEEccchhhh-ccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC-CCCc-cccccccccCCCCCHHHHHHHc
Q 041113 341 KHVLCVVGDISFLH-DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD-RTEP-RILDQYFYTTHNISIQNLCLAH 417 (983)
Q Consensus 341 ~~vv~i~GDGsf~~-~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~-~~~~-~~~~~~~~~~~~~df~~la~a~ 417 (983)
+.|+++.|||.|.. .++.|..+++ .+.+|++||+||..|++-....... .... ......-......|...++.++
T Consensus 170 ~~V~~~gGDG~~~dIG~~~L~~A~~--rg~nit~ivlDNe~Y~nTGgQ~S~~TP~Ga~t~ttp~Gk~~~kkdi~~ia~a~ 247 (447)
T d2c42a2 170 KSVWIFGGDGWAYDIGYGGLDHVLA--SGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMTY 247 (447)
T ss_dssp CEEEEEEEHHHHHTTTHHHHHHHHH--TTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHTT
T ss_pred CcEEEEecCccHhhcChHHHHHHHH--cCCCceEEEEcCccccCCCCcCCCCCcCCeecccccCCCcCCCCCHHHHHHHC
Confidence 67999999999876 5799999998 7999999999999999975421110 0000 0000000112457999999999
Q ss_pred CCcee-ee---CCHHHHHHHHHhhhccCCCEEEEEEcCc
Q 041113 418 GLNHV-QV---KTKVELEEALSMSQHLGTDRVIEVESCI 452 (983)
Q Consensus 418 G~~~~-~v---~~~~eL~~aL~~a~~~~~p~lIeV~~~~ 452 (983)
|+.++ ++ .+.+++.+++++|.+.+||.+|++....
T Consensus 248 g~~YVA~~s~~~~~~~l~kaikeA~~~~GpS~I~~~sPC 286 (447)
T d2c42a2 248 GYVYVATVSMGYSKQQFLKVLKEAESFPGPSLVIAYATC 286 (447)
T ss_dssp SSSEEEEECTTTCHHHHHHHHHHHHHSSSCEEEEEECCC
T ss_pred CCceEEEEeCCCCHHHHHHHHHHHHhCCCCeEEEeecCC
Confidence 99875 44 3678999999999999999999999876
|
| >d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Probab=98.44 E-value=8.1e-07 Score=91.59 Aligned_cols=116 Identities=18% Similarity=0.122 Sum_probs=91.5
Q ss_pred CCCCHHHHHHHHhhc-ccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcC
Q 041113 710 RNWTYQEALEFGFLI-KDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKP 785 (983)
Q Consensus 710 ~~~~~~~a~~~~~~l-~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~ 785 (983)
+..|.+|.+++...| ++|.+.+||+|+. |+++|.+|.++.++.|.+|.-..+-. .++...++ ..++.+.+|+
T Consensus 129 ~~~t~delid~y~~l~~kYPIisIEDP~~E~D~~gw~~lt~~lg~~ivGDDl~vTn~----~rl~kgi~~~aanailIK~ 204 (294)
T d2akza1 129 RYITGDQLGALYQDFVRDYPVVSIEDPFDQDDWAAWSKFTANVGIQIVGDDLTVTNP----KRIERAVEEKACNCLLLKV 204 (294)
T ss_dssp GCBCHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHHTCSSEEEESTTTTTCH----HHHHHHHHTTCCSEEEECH
T ss_pred ceecHHHHHHHHHHHhcccCeEEEeCCCcccchhhHHHHHHhcCcEEEccccccccH----HHHHHHHhcCcCccceecc
Confidence 346888888776654 8899999999999 89999999999999999888766632 34555554 4579999999
Q ss_pred CCcCCHHHHHHHHHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhch
Q 041113 786 SVIGGFENAGLIARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 786 ~~~GGl~~~~~~~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~ 831 (983)
..+|.+|++++.+.+|+++|+.++++|.. ||-=. ..+|||-++.
T Consensus 205 NQiGTltEt~ea~~la~~~g~~~ivShRsGETeD~--~iaDLAVg~~ 249 (294)
T d2akza1 205 NQIGSVTEAIQACKLAQENGWGVMVSHRSGETEDT--FIADLVVGLC 249 (294)
T ss_dssp HHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCC--HHHHHHHHHT
T ss_pred ccchhHHHHHHHHHHHHHcCCcEEeeCCCCCcCcc--hHhHHHHhcC
Confidence 99999999999999999999999999987 33212 3445555443
|
| >d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Escherichia coli [TaxId: 562]
Probab=98.40 E-value=9.4e-07 Score=90.74 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=90.9
Q ss_pred CCCHHHHHHHHhhc-ccCCCceeecCCC--ChHHHHHHHhhc--CCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEc
Q 041113 711 NWTYQEALEFGFLI-KDCDLQYIEEPVQ--NEEDIIKYCEES--GLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIK 784 (983)
Q Consensus 711 ~~~~~~a~~~~~~l-~~~~i~~iEeP~~--~~~~~~~l~~~~--~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k 784 (983)
.+|.++.+.+...| ++|.|.+||+|+. |+++|.+|.++. .+-|.+|.-..+-. ..+..-++ ..++.+.+|
T Consensus 127 ~~t~~eli~~y~~l~~~yPIisIEDP~~edD~~gw~~lt~~~g~~~~ivGDDL~~Tn~----~rl~~gi~~~~~nailiK 202 (292)
T d2fyma1 127 AFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNT----KILKEGIEKGIANSILIK 202 (292)
T ss_dssp EECHHHHHHHHHHHHHHSCEEEEESCSCTTCHHHHHHHHHHHTTTSEEEESTTTTTCH----HHHHHHHHTTCCSEEEEC
T ss_pred cccHHHHHHHHHHHHhcCceEEEeCCcccccHHHHHHHHHhcCCcEEEeCCchhccCh----HHHHhhhhcCCccceeec
Confidence 46899988887655 8899999999999 899999998886 48899998877732 24555454 457899999
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhch
Q 041113 785 PSVIGGFENAGLIARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 785 ~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~ 831 (983)
+..+|.+|++++.+++|+++|..++++|.. ||-=. ..+|||-++.
T Consensus 203 ~NQiGTvTet~ea~~la~~~g~~~ivShRSGETeD~--~iaDLAVg~g 248 (292)
T d2fyma1 203 FNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDA--TIADLAVGTA 248 (292)
T ss_dssp GGGTCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCC--HHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHHHHcCCeEeecCCCCCcccc--hHHHHHHHhC
Confidence 999999999999999999999999999987 33222 3445555443
|
| >d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=1.5e-06 Score=89.45 Aligned_cols=161 Identities=15% Similarity=0.127 Sum_probs=112.9
Q ss_pred CCCHHHHHHHHHHhhh-cCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEE-------EcCCCCCHHHHHHHHhhc
Q 041113 653 NKSPVEVASIATTLVE-EGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRV-------DANRNWTYQEALEFGFLI 724 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~-~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~v-------DaN~~~~~~~a~~~~~~l 724 (983)
..+.++.++.+.+.++ .||+. ++++|. |.+. .+-+ .+-.-.+ +.+...|.+|.+++...|
T Consensus 77 ~~~~e~aL~ll~~Ai~~aGy~~-~i~i~l--D~AA--------sefy-~~~kY~~~~~~~~~~~~~~~s~~elid~y~~l 144 (295)
T d2al1a1 77 IQTAEEALDLIVDAIKAAGHDG-KVKIGL--DCAS--------SEFF-KDGKYDLDFKNPNSDKSKWLTGPQLADLYHSL 144 (295)
T ss_dssp CSCHHHHHHHHHHHHHHHTCTT-TCEEEE--ECCG--------GGGE-ETTEECTTTTCTTCCGGGCBCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhcCCCc-ceEEEe--ehhh--------HHHh-hCCcccccccccccCCccccchHHHHHHHHHH
Confidence 4577787777777765 68863 455553 2110 1111 1111111 234456888888876655
Q ss_pred -ccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHH
Q 041113 725 -KDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARW 800 (983)
Q Consensus 725 -~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~ 800 (983)
++|.+.+||+|+. |+++|.+|.+..+.-|.+|.-..+-. .++...++ ..++.+.+|+..+|.+|++++.+.+
T Consensus 145 i~~YPIisIEDp~~e~D~~gw~~lt~~~g~~iVGDDl~~Tn~----~rl~~~i~~~~~nailiK~NQiGTvtEt~ea~~l 220 (295)
T d2al1a1 145 MKRYPIVSIEDPFAEDDWEAWSHFFKTAGIQIVADDLTVTNP----KRIATAIEKKAADALLLKVNQIGTLSESIKAAQD 220 (295)
T ss_dssp HHHSCEEEEECCSCTTCHHHHHHHHTTCCSEEEESTTTTTCH----HHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHH
T ss_pred HHhCCEEEecCCcCccchHHHHHHhhccCceeecchhhcccc----hhhhcchhhhcccceeecccchhhHHHHHHHHHH
Confidence 8899999999999 89999999999999999888777632 24555454 4479999999999999999999999
Q ss_pred HHHcCCcEEeCCCC-chHHHHHHHHHHHhhch
Q 041113 801 AQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 801 A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~ 831 (983)
|+++|+.++++|.. ||-=. ..+|||-++.
T Consensus 221 a~~~g~~~ivShRSGETeD~--~iaDLAVg~~ 250 (295)
T d2al1a1 221 SFAAGWGVMVSHRSGETEDT--FIADLVVGLR 250 (295)
T ss_dssp HHHTTCEEEEECCSBCCSCC--HHHHHHHHTT
T ss_pred HHhcCCeeecccCCCCcCcc--hhhhhhHhcC
Confidence 99999999999987 33212 3445555543
|
| >d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.35 E-value=9e-07 Score=91.20 Aligned_cols=113 Identities=17% Similarity=0.111 Sum_probs=89.3
Q ss_pred CHHHHHHHHhhc-ccCCCceeecCCC--ChHHHHHHHhhc--CCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCC
Q 041113 713 TYQEALEFGFLI-KDCDLQYIEEPVQ--NEEDIIKYCEES--GLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPS 786 (983)
Q Consensus 713 ~~~~a~~~~~~l-~~~~i~~iEeP~~--~~~~~~~l~~~~--~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~ 786 (983)
|.+|.+++...| ++|.|.+||+|+. |+++|.+|.++. .+-|.+|.-..+-. ..+..-++ ..++.+.+|+.
T Consensus 133 s~~elid~y~~l~~~YPIisIEDP~~e~D~~gw~~lt~~lg~~~~iVGDDL~vTn~----~~l~~gI~~~~~nailiK~N 208 (296)
T d1w6ta1 133 TSAEQIDYLEELVNKYPIITIEDGMDENDWDGWKALTERLGKKVQLVGDDFFVTNT----DYLARGIQEGAANSILIKVN 208 (296)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEESCSCTTCHHHHHHHHHHHTTTSEEEESTTTTTCH----HHHHHHHHHTCCSEEEECHH
T ss_pred CHHHHHHHHHHHHhcCCeEEEecCcccccHHHHHHHHHHhCCceEEEcCcccccCh----hHHHhhhhhcccccceeccc
Confidence 777877776655 8899999999999 899999998875 68899998877732 34555444 45789999999
Q ss_pred CcCCHHHHHHHHHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhch
Q 041113 787 VIGGFENAGLIARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 787 ~~GGl~~~~~~~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~ 831 (983)
.+|.+|++++.+.+|+++|+.++++|.. ||-=. ..+|||-++.
T Consensus 209 QiGTvtet~e~~~~a~~~g~~~ivShRSGETeD~--~iadLAVg~~ 252 (296)
T d1w6ta1 209 QIGTLTETFEAIEMAKEAGYTAVVSHRSGETEDS--TIADIAVATN 252 (296)
T ss_dssp HHCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCC--HHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHCCceEEeecCCCCCccc--hhHHHHHHcC
Confidence 9999999999999999999999999987 33222 3456665544
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=98.35 E-value=9.9e-08 Score=101.42 Aligned_cols=56 Identities=21% Similarity=0.257 Sum_probs=45.3
Q ss_pred EEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 924 FIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 924 ~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
+++|.+.|+++ ..|+|||+||+++++.+|..++..|.+ .|+||++|+||||.|+.+
T Consensus 35 ~~~y~~~G~~~--~~p~llllHG~~~~~~~~~~~~~~l~~~~~~vi~~Dl~G~G~S~~~ 91 (310)
T d1b6ga_ 35 RAHYLDEGNSD--AEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP 91 (310)
T ss_dssp EEEEEEEECTT--CSCEEEECCCTTCCGGGGTTTHHHHHHTTCEEEEECCTTSTTSCEE
T ss_pred EEEEEEecCCC--CCCEEEEECCCCCchHHHHHHHHHhhccCceEEEeeecCccccccc
Confidence 33445666533 147789999999999999999998865 599999999999999864
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.34 E-value=1.4e-07 Score=98.18 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=46.8
Q ss_pred EEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHh-hCCCEEEEEcCCCCCCCCCCC
Q 041113 912 YQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAV-SGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l-~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
..+++++..++ |...|.+. .+|+|||+||+++++..|...+..| +++|+||++|+||||+|+.+.
T Consensus 5 ~~~~~~g~~i~----y~~~g~~~--~~~~iv~lHG~~g~~~~~~~~~~~~~~~~~~vi~~D~~G~G~S~~~~ 70 (290)
T d1mtza_ 5 NYAKVNGIYIY----YKLCKAPE--EKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSEEPD 70 (290)
T ss_dssp EEEEETTEEEE----EEEECCSS--CSEEEEEECCTTTCCSGGGGGGGGGGGGTEEEEEECCTTSTTSCCCC
T ss_pred CeEEECCEEEE----EEEcCCCC--CCCeEEEECCCCCchHHHHHHHHHHHHCCCEEEEEeCCCCccccccc
Confidence 34555554333 35555432 2688999999988888887766655 557999999999999998753
|
| >d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.31 E-value=1.6e-06 Score=89.42 Aligned_cols=160 Identities=15% Similarity=0.088 Sum_probs=110.5
Q ss_pred CCHHHHHHHHHHhhh-cCCCEEEEeccCCCChHHHHHHHHHHHHHcC-CCcEEEEE----cCCCCCHHHHHHHHhhc-cc
Q 041113 654 KSPVEVASIATTLVE-EGFTAIKLKVARRADPIKDAEVIQEVRKKVG-HRIELRVD----ANRNWTYQEALEFGFLI-KD 726 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~-~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g-~~~~l~vD----aN~~~~~~~a~~~~~~l-~~ 726 (983)
.+.++.++.+.+.++ .||+. ++.++. |.+ ..+-+- .+-...++ -+...|.+|.+++...| ++
T Consensus 78 ~~~e~aL~ll~eAi~~ag~~~-~~~i~l--D~A--------Asef~~~~~~~Y~l~~~~~~~~~ls~~elid~y~~l~~~ 146 (291)
T d2ptza1 78 KDINEPLPILMEAIEEAGHRG-KFAICM--DCA--------ASETYDEKKQQYNLTFKSPEPTWVTAEQLRETYCKWAHD 146 (291)
T ss_dssp CCTTTHHHHHHHHHHHTTCTT-SCEEEE--ECC--------GGGGEETTTTEEETTTTSSSCCEECHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCCC-CeeEEe--eec--------hHhhhhcccccccccccccCcchhhHHHHHHHHHHHhhc
Confidence 455666666665554 68873 555543 111 111111 11233333 23346889988877766 88
Q ss_pred CCCceeecCCC--ChHHHHHHHhhcC--CcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHH
Q 041113 727 CDLQYIEEPVQ--NEEDIIKYCEESG--LPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWA 801 (983)
Q Consensus 727 ~~i~~iEeP~~--~~~~~~~l~~~~~--ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A 801 (983)
|.|.+||+|+. |+++|.+|.++.+ +-|.+|.-..+-. .++...++ ..++.+.+|+..+|.+|++++.+++|
T Consensus 147 YPIisIEDp~~e~D~~gw~~lt~~~g~k~~iVGDDL~vTn~----~rl~~gi~~~a~NaiLIK~NQiGTvtEt~ea~~la 222 (291)
T d2ptza1 147 YPIVSIEDPYDQDDFAGFAGITEALKGKTQIVGDDLTVTNT----ERIKMAIEKKACNSLLLKINQIGTISEAIASSKLC 222 (291)
T ss_dssp SCEEEEECCSCTTCHHHHHHHHHHTTTTSEEEESTTTTTCH----HHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHH
T ss_pred cceeEecCCccccchhHHHHhhhccCceEEEecCcccccch----HHHhhccccCCccceEecchhhhhHHHHHHHHHHH
Confidence 99999999999 8999999998875 7899999887732 34555454 45789999999999999999999999
Q ss_pred HHcCCcEEeCCCC-chHHHHHHHHHHHhhc
Q 041113 802 QRHGKMAVVSAAF-ESGLGLSAYIIFSSYL 830 (983)
Q Consensus 802 ~~~gi~~~~~~~~-es~ig~~a~~~laa~~ 830 (983)
+++|..++++|.. ||-=. ..+|||-++
T Consensus 223 ~~~g~~~iiShRSGETeD~--~iaDLAVg~ 250 (291)
T d2ptza1 223 MENGWSVMVSHRSGETEDT--YIADLVVAL 250 (291)
T ss_dssp HHTTCEEEEECCSBCCSCC--HHHHHHHHH
T ss_pred HHcCeeEEeeCCCCCcCcc--hHHHHHHHh
Confidence 9999999999965 33222 334555444
|
| >d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Escherichia coli [TaxId: 562]
Probab=98.24 E-value=1.4e-06 Score=92.32 Aligned_cols=117 Identities=12% Similarity=0.172 Sum_probs=89.9
Q ss_pred ecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHG 380 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g 380 (983)
..-|++|. |++.|+|.|+|. +++|+||+|||.++- +.-.+..|.+ ++|+-+|+|+|||.
T Consensus 110 ~stGsLG~--Gl~~avG~Ala~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~wEA~~~A~~--~kL~nLi~i~D~N~ 185 (331)
T d2r8oa2 110 TTTGPLGQ--GIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGT--LKLGKLIAFYDDNG 185 (331)
T ss_dssp SCCCSTTH--HHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH--TTCTTEEEEEEECS
T ss_pred cCcCchhh--hhHHHHHHHHHHHHHhhhhccccccccCceEEEecccccccccchhHhhhhcch--hcccceeeHHhhhh
Confidence 45589999 999999999983 367999999999974 5667777887 89977788888887
Q ss_pred CccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC---CHHHHHHHHHhhhc-cCCCEEEEEEcCcc
Q 041113 381 GAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK---TKVELEEALSMSQH-LGTDRVIEVESCID 453 (983)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~---~~~eL~~aL~~a~~-~~~p~lIeV~~~~~ 453 (983)
+.+... .+.. ...|+..--++||.+...+. +.+++.+|+..+.+ .++|.+|.+.|-.-
T Consensus 186 ~~~~g~-----------~~~~----~~~~~~~rf~afGw~vi~~~dghd~~~i~~A~~~a~~~~~kP~~Ii~~TikG 247 (331)
T d2r8oa2 186 ISIDGH-----------VEGW----FTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLMCKTIIG 247 (331)
T ss_dssp EETTEE-----------GGGT----CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHCCSSCEEEEEECCTT
T ss_pred hccccc-----------cccc----cchhHHHHHHHcCCeeecccccchHHHHHHHHHHHHhhcCCCccceeeeeee
Confidence 654321 1111 23478888899999987643 67788898988875 67999999998753
|
| >d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.14 E-value=4.6e-06 Score=75.20 Aligned_cols=114 Identities=12% Similarity=0.013 Sum_probs=76.0
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-----------------cCcccHH
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-----------------IHKENLL 555 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-----------------~~~~~~~ 555 (983)
.+|++|..+.+- .+.| ++++-|+|.+++|..|.+-+.... |.+..+.
T Consensus 2 ~~I~~v~~r~Il--------DSRG--------~PTvevev~~~~g~~gra~~PSGAStG~~Ea~elrD~~~~~~~Gkgv~ 65 (137)
T d1w6ta2 2 SIITDVYAREVL--------DSRG--------NPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLGTQ 65 (137)
T ss_dssp TBEEEEEEEEEE--------CTTS--------CEEEEEEEEETTCCEEEEECCCC---CCSSCCCCCCCCTTSGGGTCCH
T ss_pred CceeEEEEEEEE--------cCCC--------CEEEEEEEEECCCccceeecCcCCCcccccceeccCCccccccCCcHH
Confidence 389999988762 2332 789999999999999988553211 1111122
Q ss_pred -HHHHHHHHHHhHhccCcccc---cccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCC
Q 041113 556 -DAEEQLRFLLHFMTGAKISY---FLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYP 629 (983)
Q Consensus 556 -~~~~~l~~~~~~l~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg 629 (983)
.+...-..+.|.|+|+++.+ +..++...+.+..++ ..-..++.|+.+|++.+.++..++|||++|||
T Consensus 66 ~Av~~in~~i~~~L~G~d~~dq~~iD~~lielDgT~nks-------~lGaNailAvSlA~akAaA~~~~~pLy~yigg 136 (137)
T d1w6ta2 66 KAVDNVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKG-------KLGANAILGVSIAVARAAADYLEIPLYSYLGG 136 (137)
T ss_dssp HHHHHHHHTHHHHHTTSBTTCHHHHHHHHHHHHCSTTCT-------TTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHC
T ss_pred HHHHHHHHHhHHHHcCCccccHHHHHHHHHHhcCccccc-------ccchhHHHHHHHHHHHHHHHHcCCcHHHhhcC
Confidence 23323345789999998876 233332222221122 22357888999999999999999999999998
|
| >d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=98.13 E-value=4.2e-06 Score=88.87 Aligned_cols=117 Identities=17% Similarity=0.224 Sum_probs=85.8
Q ss_pred ecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHG 380 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g 380 (983)
..-|++|. |++.|+|.|+|. +++|+||+|||.++- +.-.+..|.+ ++|+-+|+|+|||.
T Consensus 111 ~stGsLG~--Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~vy~~~GDGel~EG~~~EA~~~A~~--~~L~nLi~i~D~N~ 186 (336)
T d1r9ja2 111 VTTGPLGQ--GIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGH--LALEKLIVIYDSNY 186 (336)
T ss_dssp SCCCSTTH--HHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH--HTCTTEEEEEEECS
T ss_pred cccccccc--CcchhhHHHHHHHHHhccccccccccccceeEEeccchhhchHHHHHHHHHHHH--hhcCCEEEEEeccc
Confidence 34589999 999999999983 357999999999985 4556667776 89977788888876
Q ss_pred CccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeCC----HHHHHHHHHhhhc-cCCCEEEEEEcCcc
Q 041113 381 GAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKT----KVELEEALSMSQH-LGTDRVIEVESCID 453 (983)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~----~~eL~~aL~~a~~-~~~p~lIeV~~~~~ 453 (983)
..+-.. .+. ...-|+.+--++||.+...|+. .+.+..++..+.. .++|++|.+.|-..
T Consensus 187 ~~idg~-----------~~~----~~~~d~~~rf~afGW~vi~Vdgg~~d~~~~~~~~~~a~~~~~kP~~Ii~kTiiG 249 (336)
T d1r9ja2 187 ISIDGS-----------TSL----SFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMIVQTTTIG 249 (336)
T ss_dssp BCSSSB-----------GGG----TCCCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCTT
T ss_pred cccccc-----------ccc----cchhHHHHHHHHhccceEEEecCchHHHHHHHHhhhhhhccCCCccceEEEEEe
Confidence 543211 111 1234788888999999999964 3445556665543 56899999998764
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=98.04 E-value=2.3e-06 Score=90.47 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=37.6
Q ss_pred CceEEEeCCCCCChhhHHHH-------HH-HhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPI-------MK-AVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~-------~~-~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
++||||+||++.++.+|+.+ ++ .+++.|+||++|+||||+|..+
T Consensus 58 ~~PvvllHG~~~~~~~w~~~~~~~~~~~~~~~~~Gy~V~~~D~~G~G~S~~~ 109 (318)
T d1qlwa_ 58 RYPITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATD 109 (318)
T ss_dssp SSCEEEECCTTCCGGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCC
T ss_pred CCcEEEECCCCCCcCccccCcccchhHHHHHHhCCCEEEEecCCCCCCCCCc
Confidence 68899999999999999753 44 4566799999999999999865
|
| >d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Maize (Zea mays) [TaxId: 4577]
Probab=98.04 E-value=8.2e-06 Score=86.58 Aligned_cols=116 Identities=15% Similarity=0.178 Sum_probs=87.8
Q ss_pred ecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHG 380 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g 380 (983)
..-|++|. |++.|+|.++|. +++|+|++|||..+- +.-.+..|.+ ++|.=+++|+|+|.
T Consensus 115 ~stGsLG~--Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~vl~GDGel~EG~~wEA~~~A~~--~~L~NLi~i~D~N~ 190 (338)
T d1itza1 115 VTTGPLGQ--GIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGH--WGLGKLIAFYDDNH 190 (338)
T ss_dssp SCCCSTTH--HHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH--TTCTTEEEEEEECS
T ss_pred ccCCcHHh--hHHHHHHHHHHHHHHhccccccccccccceEEEEeCccccchHHHHHHHhHhhh--hhccceeeeehhhc
Confidence 44589999 999999999882 468999999999975 4566777777 89966666666666
Q ss_pred CccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeCC----HHHHHHHHHhhhc-cCCCEEEEEEcCc
Q 041113 381 GAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKT----KVELEEALSMSQH-LGTDRVIEVESCI 452 (983)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~----~~eL~~aL~~a~~-~~~p~lIeV~~~~ 452 (983)
..+-. ..+ ....-|+..--++||.+...|.+ .+++..+++.+.. .++|++|.+.|-.
T Consensus 191 ~~~dg-----------~~~----~~~~~~~~~k~~a~Gw~vi~v~~g~~~~~~i~~a~~~a~~~~~kPt~Iia~Tik 252 (338)
T d1itza1 191 ISIDG-----------DTE----IAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIKVTTTI 252 (338)
T ss_dssp EETTE-----------EGG----GTCCSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCT
T ss_pred ccccc-----------ccc----cccCCCHHHHHHhcCCeEEEeeCCchhHHHHHHHHHHHHHccCCCceeEeecCc
Confidence 54321 111 11235789999999999988753 5788999988864 6799999999875
|
| >d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.01 E-value=8.5e-06 Score=86.35 Aligned_cols=117 Identities=14% Similarity=0.175 Sum_probs=85.4
Q ss_pred ecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHG 380 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g 380 (983)
..-|++|. |++.|+|.|+|. +++|+||+|||.++= +.-.+..|.+ ++|.=+|+|+|+|.
T Consensus 111 ~stGsLG~--Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~~EA~~~A~~--~~L~NLi~i~D~N~ 186 (335)
T d1gpua1 111 VTTGPLGQ--GISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGH--LKLGNLIAIYDDNK 186 (335)
T ss_dssp SCCCSTTH--HHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH--TTCTTEEEEEEECS
T ss_pred eCCCChhH--HHHHHHHHHHHhHhhhcccccCCcCCCCCcEEEEecchhhchhhhhhhHhHhhh--hccCCEEEEEeccc
Confidence 45599999 999999999984 467999999999975 4556677777 89966677777776
Q ss_pred CccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC----CHHHHHHHHHhhhc-cCCCEEEEEEcCcc
Q 041113 381 GAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK----TKVELEEALSMSQH-LGTDRVIEVESCID 453 (983)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~----~~~eL~~aL~~a~~-~~~p~lIeV~~~~~ 453 (983)
..+-. ..+.. ..-|..+.-++||.+...|+ +...+..++.++.. .++|++|.+.|-..
T Consensus 187 ~~~dg-----------~~~~~----~~~~~~~~f~a~GW~vi~vdg~~~d~~~~~~~~~~~~~~~~KPt~Iia~TikG 249 (335)
T d1gpua1 187 ITIDG-----------ATSIS----FDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIG 249 (335)
T ss_dssp EETTE-----------EGGGT----CCCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHCTTSCEEEEEECCTT
T ss_pred ccccc-----------ccccc----ccCCHHHHHHhCCCcEEEEcCCchhHHHHHHHHhhhhcccCCCcceEEeeccC
Confidence 54421 11111 12378888899999999995 33455666666553 57899999998754
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=97.95 E-value=2.3e-06 Score=92.82 Aligned_cols=45 Identities=13% Similarity=0.300 Sum_probs=38.4
Q ss_pred CCceEEEeCCCCCChhhHHH------HHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 937 QDNILLFLHGFLGTGEEWIP------IMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 937 ~~~~lv~lHG~~~~~~~w~~------~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
.+|+|||+||+++++.+|.. ++..|.+ +|+|+++|+||||.|+.+
T Consensus 57 ~~~~vlllHG~~~~~~~~~~~~~~~sla~~L~~~Gy~V~~~D~rG~G~S~~~ 108 (377)
T d1k8qa_ 57 RRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGNTWARRN 108 (377)
T ss_dssp TCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTSTTSCEE
T ss_pred CCCeEEEECCCccchhHHhhcCccchHHHHHHHCCCEEEEEcCCCCCCCCCC
Confidence 37899999999999999954 5666654 599999999999999854
|
| >d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=1.9e-05 Score=71.61 Aligned_cols=113 Identities=13% Similarity=0.007 Sum_probs=75.2
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCc------------------CcccHH
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEI------------------HKENLL 555 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~------------------~~~~~~ 555 (983)
||++|..+.+- .+.| ++++-|+|.+++|..|.+-+. .+. .+..+.
T Consensus 2 kI~~v~~r~Il--------DSRG--------~PTvevev~~~~g~~g~a~~P-sGaStG~~Ea~elrD~~~~~~~Gkgv~ 64 (139)
T d2fyma2 2 KIVKIIGREII--------DSRG--------NPTVEAEVHLEGGFVGMAAAP-SGASTGSREALELRDGDKSRFLGKGVT 64 (139)
T ss_dssp BEEEEEEEEEE--------CTTS--------CEEEEEEEEETTSCEEEEECC-CCCSSCSSSCCCCCCCCTTSGGGTCCH
T ss_pred eeEEEEEEEEE--------cCCC--------CeEEEEEEEECCCCEeEEECC-cccCccccccccccCCChhhhcccccc
Confidence 79999988762 2332 789999999999999998553 221 111222
Q ss_pred -HHHHHHHHHHhHhccCccccc---ccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCC
Q 041113 556 -DAEEQLRFLLHFMTGAKISYF---LPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPL 630 (983)
Q Consensus 556 -~~~~~l~~~~~~l~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~ 630 (983)
.+...-..+.|.|+|+++.+. ...+...+.+..+. .....+..|+.+|++.+.|+..++|||++|++.
T Consensus 65 ~av~~in~~i~~~Lig~~~~dq~~iD~~li~lDgT~nks-------~lGaNailAvS~A~akAaA~~~~~pLy~yi~~~ 136 (139)
T d2fyma2 65 KAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKS-------KFGANAILAVSLANAKAAAAAKGMPLYEHIAEL 136 (139)
T ss_dssp HHHHHHHTHHHHHHTTSBTTCHHHHHHHHHHHHCSTTCT-------TTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhCCchhhhHHHHHHHHhccCCcccc-------ccchHHHHHHHHHHHHHHHHHcCCCHHHHhHhh
Confidence 222233457899999988652 22222222111111 233678899999999999999999999999753
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=97.74 E-value=1.3e-05 Score=80.91 Aligned_cols=44 Identities=25% Similarity=0.465 Sum_probs=40.2
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
+|.|||+||++++...|..+.+.|++ .|.|++||+||||.|..+
T Consensus 24 ~~~vl~lHG~~~~~~~~~~~~~~la~~G~~V~~~D~~g~g~s~~~ 68 (238)
T d1ufoa_ 24 KALLLALHGLQGSKEHILALLPGYAERGFLLLAFDAPRHGEREGP 68 (238)
T ss_dssp CEEEEEECCTTCCHHHHHHTSTTTGGGTEEEEECCCTTSTTSSCC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCCCCCccc
Confidence 68999999999999999999998876 599999999999998754
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=1.3e-05 Score=82.13 Aligned_cols=42 Identities=10% Similarity=0.139 Sum_probs=38.7
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
++||||+||+++++..|+.+++.| +++|+++|+||||.|++.
T Consensus 25 ~~Pl~l~Hg~~gs~~~~~~l~~~L--~~~v~~~d~~g~~~~~~~ 66 (286)
T d1xkta_ 25 ERPLFLVHPIEGSTTVFHSLASRL--SIPTYGLQCTRAAPLDSI 66 (286)
T ss_dssp SCCEEEECCTTCCCGGGHHHHHTC--SSCEEEECCCTTSCCSCH
T ss_pred CCeEEEECCCCccHHHHHHHHHHc--CCeEEEEeCCCCCCCCCH
Confidence 778999999999999999999999 589999999999998753
|
| >d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Probab=97.59 E-value=4.7e-05 Score=68.94 Aligned_cols=112 Identities=14% Similarity=0.010 Sum_probs=73.0
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcC------------------cccH
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIH------------------KENL 554 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~------------------~~~~ 554 (983)
|||++|..+.+- .+.| ++++-|+|.+++|.. -+ ++|.+.+ +..+
T Consensus 2 M~I~~i~~r~Il--------DSRG--------~PTvevev~~~~g~~-ra-~~PsGaStG~~Ea~elrd~~~~~~~Gkgv 63 (139)
T d2ptza2 2 MTIQKVHGREVL--------DSRG--------NPTVEVEVTTEKGVF-RS-AVPSGASTGVYEACELRDGDKKRYVGKGC 63 (139)
T ss_dssp TSCCEEEEEEEE--------CTTS--------CEEEEEEEEETTEEE-EE-ECCBCSSCCTTSCCCCCCCCTTTGGGTCC
T ss_pred CeEEEEEEEEEE--------cCCC--------CeEEEEEEEECCCce-eE-eccccccccchhhhhcCCCcccccccchH
Confidence 789999988762 2332 789999999999854 34 4454321 1111
Q ss_pred H-HHHHHHHHHHhHhccCccccc---ccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCC
Q 041113 555 L-DAEEQLRFLLHFMTGAKISYF---LPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYP 629 (983)
Q Consensus 555 ~-~~~~~l~~~~~~l~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg 629 (983)
. .+......+.|.|+|+++.+. ...+...+....+ ......++.|+.+|++.+.|+..++|||++|++
T Consensus 64 ~~Av~nin~~I~~~L~g~~~~dQ~~iD~~li~lDgt~nk-------s~lGaNailAvS~A~akA~A~~~~~pLy~yi~~ 135 (139)
T d2ptza2 64 LQAVKNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNK-------GKLGANAILGCSMAISKAAAAAKGVPLYRYLAS 135 (139)
T ss_dssp HHHHHHHHHTHHHHHTTCCTTCHHHHHHHHHHHHCSTTC-------TTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhhhccchhhcccchhhHHHHHHHHHHHhCCcch-------hhhhhHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 1 233334568899999988752 2222221111111 123467889999999999999999999999974
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=97.59 E-value=4.7e-05 Score=80.26 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=35.9
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCC-CCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGH-GGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~-G~S~~ 980 (983)
+++|||+|||+.+...|..+++.|.++ |+|+++|+||| |.|+.
T Consensus 32 ~~~Vvi~HG~~~~~~~~~~~a~~L~~~G~~Vi~~D~rGh~G~S~g 76 (302)
T d1thta_ 32 NNTILIASGFARRMDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSG 76 (302)
T ss_dssp SCEEEEECTTCGGGGGGHHHHHHHHTTTCCEEEECCCBCC-----
T ss_pred CCEEEEeCCCcchHHHHHHHHHHHHHCCCEEEEecCCCCCCCCCC
Confidence 578999999999999999999999876 99999999999 77764
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=97.58 E-value=8.7e-05 Score=77.95 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=40.0
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
.|.|||+||++++...|..+...|++ .|.|+++|+||||.|+.+
T Consensus 82 ~P~vv~~HG~~~~~~~~~~~~~~la~~Gy~vi~~D~rG~G~s~~~ 126 (318)
T d1l7aa_ 82 HPAIVKYHGYNASYDGEIHEMVNWALHGYATFGMLVRGQQRSEDT 126 (318)
T ss_dssp EEEEEEECCTTCCSGGGHHHHHHHHHTTCEEEEECCTTTSSSCCC
T ss_pred ceEEEEecCCCCCccchHHHHHHHHHCCCEEEEEeeCCCCCCCCC
Confidence 68999999999999999999988865 499999999999999764
|
| >d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.30 E-value=0.0002 Score=64.90 Aligned_cols=97 Identities=15% Similarity=0.087 Sum_probs=60.6
Q ss_pred eeEEEEEEEECCCCEEEEeecCcCcC------------------cccHHHHHHHH-HHHHhHhc--cCcccc---ccccc
Q 041113 525 REGFILSLYLEDGSVGYGEVAPLEIH------------------KENLLDAEEQL-RFLLHFMT--GAKISY---FLPLL 580 (983)
Q Consensus 525 ~~~~lv~v~t~~G~~G~GE~~~~~~~------------------~~~~~~~~~~l-~~~~~~l~--g~~~~~---~~~~~ 580 (983)
++++-|+|.|++| .|.+- .|.+.+ +..+......+ ..+.|.|+ |.++.+ +...+
T Consensus 16 ~PTvev~v~~~~g-~~ra~-~PSGaStG~~EA~elrD~~~~~~~gkgV~~av~nin~~i~~~Li~~g~~~~dq~~iD~~l 93 (141)
T d2al1a2 16 NPTVEVELTTEKG-VFRSI-VPSGASTGVHEALEMRDGDKSKWMGKGVLHAVKNVNDVIAPAFVKANIDVKDQKAVDDFL 93 (141)
T ss_dssp CEEEEEEEEETTE-EEEEE-CCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHTCCTTCHHHHHHHH
T ss_pred CcEEEEEEEECCC-eEEEe-eccCCCCCcceeeeecCCCccccccccchhHHHHHHHHhHHHHhhcCCchhhHHHHHHHH
Confidence 7899999999998 57763 444221 11122222223 35778887 555443 33333
Q ss_pred ccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCC
Q 041113 581 KGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPL 630 (983)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~ 630 (983)
...+....+. .....+.-|+.+|++.+.++..|+|||++|++-
T Consensus 94 i~lDgT~nks-------~lGaNailAvS~A~akAaA~~~~~pLy~yl~~~ 136 (141)
T d2al1a2 94 ISLDGTANKS-------KLGANAILGVSLAASRAAAAEKNVPLYKHLADL 136 (141)
T ss_dssp HHHHCSTTST-------TTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHccCCcchh-------hhhhHHHHHHHHHHHHHHHHHcCCCHHHHHHhh
Confidence 2222211111 234678899999999999999999999999763
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=97.15 E-value=0.00021 Score=77.05 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=38.3
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
.|.||++||+.++...|..+...|.+ .|.|+++|+||||.|...
T Consensus 131 ~P~Vi~~hG~~~~~e~~~~~~~~l~~~G~~vl~~D~~G~G~s~~~ 175 (360)
T d2jbwa1 131 HPAVIMLGGLESTKEESFQMENLVLDRGMATATFDGPGQGEMFEY 175 (360)
T ss_dssp EEEEEEECCSSCCTTTTHHHHHHHHHTTCEEEEECCTTSGGGTTT
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHhcCCEEEEEccccccccCcc
Confidence 58899999999999888888887765 599999999999998643
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=96.98 E-value=0.00027 Score=70.11 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=37.4
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S 978 (983)
+++|||+||+++++..|..+.+.|+ .|+|+++|++|||.+
T Consensus 17 ~~~l~~lhg~~g~~~~~~~la~~L~-~~~v~~~~~~g~~~~ 56 (230)
T d1jmkc_ 17 EQIIFAFPPVLGYGLMYQNLSSRLP-SYKLCAFDFIEEEDR 56 (230)
T ss_dssp SEEEEEECCTTCCGGGGHHHHHHCT-TEEEEEECCCCSTTH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHCC-CCEEeccCcCCHHHH
Confidence 6899999999999999999999995 699999999999864
|
| >d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Probab=96.76 E-value=0.0013 Score=59.14 Aligned_cols=96 Identities=13% Similarity=0.075 Sum_probs=59.5
Q ss_pred eeEEEEEEEECCCCEEEEeecCcCcC------------------cccHH-HHHHHHHHHHhHhc--cCcccc---ccccc
Q 041113 525 REGFILSLYLEDGSVGYGEVAPLEIH------------------KENLL-DAEEQLRFLLHFMT--GAKISY---FLPLL 580 (983)
Q Consensus 525 ~~~~lv~v~t~~G~~G~GE~~~~~~~------------------~~~~~-~~~~~l~~~~~~l~--g~~~~~---~~~~~ 580 (983)
++++-|+|.+++| .|.+- .|.+.+ +..+. .+...-..+.|.|+ |.++.+ +...+
T Consensus 16 ~PTvevev~~~~g-~~~a~-~PsGaStG~~Ea~elrd~~~~~~~gkgV~~Av~~i~~~i~~~Li~~g~~~~dQ~~iD~~L 93 (139)
T d2akza2 16 NPTVEVDLYTAKG-LFRAA-VPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHINSTIAPALISSGLSVVEQEKLDNLM 93 (139)
T ss_dssp CEEEEEEEEETTE-EEEEE-CCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHCCCTTCHHHHHHHH
T ss_pred CeEEEEEEEECCC-eEEEe-cccccccchhhhhhccccccccccCCchhhHHHhhHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 7899999999987 46553 344321 11122 22222345778886 766655 22233
Q ss_pred ccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCC
Q 041113 581 KGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYP 629 (983)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg 629 (983)
...+.+..+. .....++.|+.+|++.+.|+..++|||++|++
T Consensus 94 ~~lDgt~nks-------~lGaNailAvSlA~akA~A~~~~~pLy~yi~~ 135 (139)
T d2akza2 94 LELDGTENKS-------KFGANAILGVSLAVCKAGAAERELPLYRHIAQ 135 (139)
T ss_dssp HHHHCSTTCT-------TTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHccCccchh-------hcChHHHHHHHHHHHHHHHHHcCCcHHHHhHh
Confidence 2222111111 23367889999999999999999999999874
|
| >d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus vulgaris) [TaxId: 6707]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: European lobster (Homarus vulgaris) [TaxId: 6707]
Probab=96.72 E-value=0.0011 Score=59.35 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=58.1
Q ss_pred eeEEEEEEEECCCCEEEEeecCcCcC------------------cccHH-HHHHHHHHHHhHhcc--Ccccc---ccccc
Q 041113 525 REGFILSLYLEDGSVGYGEVAPLEIH------------------KENLL-DAEEQLRFLLHFMTG--AKISY---FLPLL 580 (983)
Q Consensus 525 ~~~~lv~v~t~~G~~G~GE~~~~~~~------------------~~~~~-~~~~~l~~~~~~l~g--~~~~~---~~~~~ 580 (983)
++++-|+|.+++| .|.+- .|.+.+ +..+. .+...-..+.|.|++ .++.+ +...+
T Consensus 16 ~PTVev~v~~~~~-~~ra~-~PSGAStG~~EA~elrD~~~~~~~Gkgv~~Av~nin~~i~~~Li~~g~~~~dq~~iD~~L 93 (139)
T d1pdza2 16 NPTVEVDLYTSKG-LFRAA-VPSGASTGVHEALEMRDGDKSKYHGKSVFNAVKNVNDVIVPEIIKSGLKVTQQKECDEFM 93 (139)
T ss_dssp CEEEEEEEEETTE-EEEEE-CCCCBSSCSSSCBCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHTCCTTCHHHHHHHH
T ss_pred CcEEEEEEEECCC-eEEEe-cccCcCCcchhheecccCCccccccccccceeecchhhhhHHHHhcCccccchhhhHHHH
Confidence 7899999999876 46653 444321 11111 222222457788864 44443 22222
Q ss_pred ccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCC
Q 041113 581 KGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYP 629 (983)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg 629 (983)
...+.+..+. .....++-|+.+|++.+.++..|+|||++|++
T Consensus 94 i~lDgT~nks-------~lGaNailAvS~A~akAaA~~~~~pLy~yi~~ 135 (139)
T d1pdza2 94 CKLDGTENKS-------SLGANAILGVSLAICKAGAAELGIPLYRHIAN 135 (139)
T ss_dssp HHHHCSSSST-------TTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HhhcCccchh-------hhhhHHHHHHHHHHHHHHHHHcCCcHHHHhhc
Confidence 2222111111 23467889999999999999999999999975
|
| >d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=96.70 E-value=0.0037 Score=55.41 Aligned_cols=110 Identities=25% Similarity=0.381 Sum_probs=72.3
Q ss_pred CCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCc----ccH---HHHHHHH-HHHHhHhccCccccccccc
Q 041113 509 APPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHK----ENL---LDAEEQL-RFLLHFMTGAKISYFLPLL 580 (983)
Q Consensus 509 ~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~----~~~---~~~~~~l-~~~~~~l~g~~~~~~~~~~ 580 (983)
.|.+.++.++ +..-+.+.|.+..+||.+.||.|+...|++ +.+ .+....+ +.+.|+|.|++...+..+-
T Consensus 37 ~p~TpGF~~V---Rq~gesisV~l~L~dG~va~GDCaaVqySGagGRDPLF~A~~~i~~~e~~v~p~L~g~d~~~Fr~~A 113 (160)
T d1kkoa2 37 DPVTPGFTSV---RQAGECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLAEHFIPFLNDHIKPLLEGRDVDAFLPNA 113 (160)
T ss_dssp CCCSTTCSSS---EEEEEEEEEEEEETTSCEEEEEECCCTTTTSTTCCCCCCHHHHHHHHHHHTHHHHTTCBCSCSHHHH
T ss_pred CCCCCCchhh---hccCcEEEEEEEeCCCCEEEeeehheeecCCCCCCccccHHHHHHHHHHhhhHHHhCCcHHHHHHHH
Confidence 3555566543 234778999999999999999997654321 111 1122222 4688999999988754432
Q ss_pred ccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhc
Q 041113 581 KGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNIL 627 (983)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lL 627 (983)
.. ...+.+....++.+.+.+|..||+|+.+|....-..+.+
T Consensus 114 ~~------~d~~~~~g~~LHtAiRYGvSQALL~A~A~a~r~tmaeVi 154 (160)
T d1kkoa2 114 RF------FDKLRIDGNLLHTAVRYGLSQALLDATALASGRLKTEVV 154 (160)
T ss_dssp HH------HHHCEETTEECCHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HH------HhhcccCCCchhHHHHHhHHHHHHHHHHHHcCccHHHHH
Confidence 11 111222344567889999999999999999887665554
|
| >d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=96.68 E-value=0.0032 Score=55.85 Aligned_cols=110 Identities=22% Similarity=0.362 Sum_probs=72.3
Q ss_pred CCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCc----ccH---HHHHHHH-HHHHhHhccCccccccccc
Q 041113 509 APPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHK----ENL---LDAEEQL-RFLLHFMTGAKISYFLPLL 580 (983)
Q Consensus 509 ~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~----~~~---~~~~~~l-~~~~~~l~g~~~~~~~~~~ 580 (983)
.|.+.++.++ +..-+.+.|.+..+||.+.||.|+...|++ +.+ .+....+ +.+.|+|.|++...+..+.
T Consensus 37 ~p~TpGF~~V---Rq~gesisV~l~L~dG~va~GDCaaVqySGagGRDPLF~A~~~i~~~e~~v~p~L~g~d~~~Fr~~a 113 (160)
T d1kcza2 37 STVTEGFTQV---RQKGESISVLLVLEDGQVAHGDCAAVQYSGAGGRDPLFLAKDFIPVIEKEIAPKLIGREITNFKPMA 113 (160)
T ss_dssp CCCSTTCSSS---EEECCEEEEEEEETTSCEEEEEECCCTTTTSTTSCSCCCHHHHHHHHHHHTHHHHTTCBCCCHHHHH
T ss_pred CCCCCCchhh---hccCcEEEEEEEeCCCCEEEeeehheeecCCCCCCccccHHHHHHHHHHhhhHHHhCCcHHHHHHHH
Confidence 3555555543 234678999999999999999997654321 111 1122222 4688999999988764443
Q ss_pred ccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhc
Q 041113 581 KGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNIL 627 (983)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lL 627 (983)
... ..+.+.+..++.+.+.+|..||+|+.+|....-..+.+
T Consensus 114 ~~~------d~~~~~g~~LHtAiRYGvSQALL~A~A~a~r~tmaeVi 154 (160)
T d1kcza2 114 EEF------DKMTVNGNRLHTAIRYGITQAILDAVAKTRKVTMAEVI 154 (160)
T ss_dssp HHH------HHCEETTEECCHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHH------hhcccCCcchhHHHHHhHHHHHHHHHHHHcCCcHHHHh
Confidence 211 11222234567889999999999999999887666554
|
| >d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Pyruvate dehydrogenase E1 component, PP module species: Escherichia coli [TaxId: 562]
Probab=96.60 E-value=0.0032 Score=68.38 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=34.5
Q ss_pred CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeCCCCccc
Q 041113 340 NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINNHGGAIF 384 (983)
Q Consensus 340 ~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~ 384 (983)
+.+|+|++|||+++ ++.-.+..+.+ +++.-+|+|+|+|...+-
T Consensus 166 ~~~~~~~~gDg~~~eg~~~ea~~~a~~--~~l~nl~~i~d~N~~~~~ 210 (415)
T d2ieaa2 166 KQTVYAFLGDGEMDEPESKGAITIATR--EKLDNLVFVINCNLQRLD 210 (415)
T ss_dssp TCCEEEEEETGGGGSHHHHTTHHHHHH--TTCTTEEEEEEECSBCSS
T ss_pred CceEEEEecccccchHHHHHHHHHHHH--hCCCeEEEEEeCCceeec
Confidence 57899999999996 56778888887 898666777888876554
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=96.59 E-value=0.0014 Score=68.67 Aligned_cols=44 Identities=16% Similarity=0.099 Sum_probs=37.4
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
.|.||++||++.+...|.......+..|.|+++|+||||.|..+
T Consensus 82 ~P~Vv~~hG~~~~~~~~~~~~~~a~~G~~v~~~D~rG~G~s~~~ 125 (322)
T d1vlqa_ 82 LPCVVQYIGYNGGRGFPHDWLFWPSMGYICFVMDTRGQGSGWLK 125 (322)
T ss_dssp EEEEEECCCTTCCCCCGGGGCHHHHTTCEEEEECCTTCCCSSSC
T ss_pred ccEEEEecCCCCCcCcHHHHHHHHhCCCEEEEeeccccCCCCCC
Confidence 57899999999988888766666667899999999999998754
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.39 E-value=0.00099 Score=68.93 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=37.6
Q ss_pred CceEEEeCCC--CCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGF--LGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~--~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||+ +++...|.++.+.|..+++|+++|+||||.|+.+
T Consensus 60 ~~~l~c~~~~~~~g~~~~y~~la~~L~~~~~V~al~~pG~~~~~~~ 105 (283)
T d2h7xa1 60 RAVLVGCTGTAANGGPHEFLRLSTSFQEERDFLAVPLPGYGTGTGT 105 (283)
T ss_dssp CCEEEEECCCCTTCSTTTTHHHHHTTTTTCCEEEECCTTCCBC---
T ss_pred CceEEEeCCCCCCCCHHHHHHHHHhcCCCceEEEEeCCCCCCCCCC
Confidence 6899999996 4677899999999999999999999999988753
|
| >d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=96.32 E-value=0.0087 Score=57.17 Aligned_cols=114 Identities=11% Similarity=0.013 Sum_probs=79.6
Q ss_pred hHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHN 407 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (983)
+.-+|-|.+..+++++++++.-.|+.-.+..|..+.. .++|+++|.-+......-+.. ...+.+.....
T Consensus 52 A~~mA~gyar~tg~~~v~~t~GpG~~N~~~gl~~A~~--~~~Pvl~isg~~~~~~~~~~~---------~~~~~~~~~~~ 120 (186)
T d1zpda2 52 CGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYA--ENLPVILISGAPNNNDHAAGH---------VLHHALGKTDY 120 (186)
T ss_dssp HHHHHHHHHHHHSCEEEEECTTTTHHHHHHHHHHHHH--TTCCEEEEEEECCGGGTTTTC---------BCTTSCSSSCC
T ss_pred eehhhhhhhhccccceeEeeccccchhhhhhhhhhhh--cccceEEEecccCcccccCCC---------cceeecCCcch
Confidence 5567777777778888888777888888999999988 899999998875544222110 00111111122
Q ss_pred CCHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 408 ISIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 408 ~df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
.|...+.+.+-....++++++++.+.+++|+ ..++|+.|||..|-
T Consensus 121 ~~~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~~PV~l~iP~Dv 169 (186)
T d1zpda2 121 HYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNI 169 (186)
T ss_dssp CHHHHHHGGGCSCEEEECSGGGHHHHHHHHHHHHHHHTCCEEEEEETTS
T ss_pred hhhhhccCCceeeeeEcCCHHHHHHHHHHHHHHHhhCCCCEEEECCcch
Confidence 3456788888888999999888777776664 44689999999764
|
| >d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.32 E-value=0.007 Score=57.87 Aligned_cols=106 Identities=13% Similarity=0.092 Sum_probs=80.5
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+..++++.+|++ .--|+...+..|.++.. .+.|+++|.-+.......+. ...+
T Consensus 49 A~~~A~gyar~tg~~gv~~~t~GpG~~n~~~gl~~A~~--~~~Pvl~i~g~~~~~~~~~~----------------~~~q 110 (186)
T d2ihta2 49 AGVAADVLARITGRPQACWATLGPGMTNLSTGIATSVL--DRSPVIALAAQSESHDIFPN----------------DTHQ 110 (186)
T ss_dssp HHHHHHHHHHHHCSCEEEEECTTHHHHHHHHHHHHHHH--HTCCEEEEEEESCGGGCCTT----------------TSTT
T ss_pred hHHHHHHHhhccCCcceeeccccccccchhhhhhHHHH--hhccceeeeccCcchhcccc----------------cccc
Confidence 56677887777777766655 56677788899999987 79999999876654332211 1124
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
..|...+.+.+-....+|++++++.+.+++|++ ..||+.|||..|
T Consensus 111 ~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~a~s~~~GPv~l~iP~D 160 (186)
T d2ihta2 111 CLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVD 160 (186)
T ss_dssp CCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred ccccccccCCceeeccccCCchhhhhHHHHHHHHHhcCCCeeEEEEeCHh
Confidence 579999999998889999999999888888763 358999999865
|
| >d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.11 E-value=0.01 Score=56.26 Aligned_cols=105 Identities=10% Similarity=0.018 Sum_probs=79.4
Q ss_pred hHHHHHhhhhccCceEEEEEc-cchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVG-DISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~G-DGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+..++++.+|++. --|+...+..|.+|.. .+.|+++|.-+......-+ ...+
T Consensus 54 A~~~A~gyar~tg~~gv~~~t~GpG~~n~~~gi~~A~~--~~~Pvl~isg~~~~~~~~~-----------------~~~q 114 (181)
T d1ozha2 54 AAFMAAAVGRITGKAGVALVTSGPGCSNLITGMATANS--EGDPVVALGGAVKRADKAK-----------------QVHQ 114 (181)
T ss_dssp HHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHHHHHHH--HTCCEEEEEEECCTTTC-----------------------
T ss_pred HHHHHHHHHHhcCCccceeeccchhhhhhhhhHHHHhh--cCCceeeeecccchhhccc-----------------cccc
Confidence 566777777777778777664 4477888999999987 8999999988765432210 1124
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
..|...+.+.+--...+|++++++.+.+++|++ ..||+.||+..|
T Consensus 115 ~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (181)
T d1ozha2 115 SMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 164 (181)
T ss_dssp CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred cccccccccccchheeccCchhHHHHHHHHHHHHHhhCCCccEEEEcChH
Confidence 579999999999999999999999888888763 368999999865
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=96.00 E-value=0.0024 Score=66.58 Aligned_cols=43 Identities=14% Similarity=-0.021 Sum_probs=36.8
Q ss_pred CceEEEeCCCCCChhh--HHHHHHHhhCC-CEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEE--WIPIMKAVSGS-ARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~--w~~~~~~l~~~-~~vi~~Dl~G~G~S~~ 980 (983)
++||||+||++.+... |..+.+.|.+. |+|+.+|+||+|.++.
T Consensus 31 ~~PVvlvHG~~~~~~~~~~~~~~~~L~~~Gy~v~~~d~~g~g~~d~ 76 (317)
T d1tcaa_ 31 SKPILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPFMLNDT 76 (317)
T ss_dssp SSEEEEECCTTCCHHHHHTTTHHHHHHTTTCEEEEECCTTTTCSCH
T ss_pred CCcEEEECCCCCCCcchhHHHHHHHHHhCCCeEEEecCCCCCCCch
Confidence 5789999999988765 56788999776 9999999999998763
|
| >d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.90 E-value=0.013 Score=55.50 Aligned_cols=114 Identities=10% Similarity=-0.026 Sum_probs=73.4
Q ss_pred hHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHN 407 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (983)
+.-+|-|.+.++++++++++.--|+.-.+..|..+.. .++|+++|.-.+.....-+... ....+.....
T Consensus 53 A~~~A~gyar~t~~~~v~~t~GpG~~N~~~gl~~A~~--~~~P~l~i~g~~~~~~~~~~~~---------~~~~~~~~~~ 121 (180)
T d1pvda2 53 AAYAADGYARIKGMSCIITTFGVGELSALNGIAGSYA--EHVGVLHVVGVPSISSQAKQLL---------LHHTLGNGDF 121 (180)
T ss_dssp HHHHHHHHHHHHSCEEEEEETTHHHHHHHHHHHHHHH--HTCCEEEEEEECCCC-----------------CCSCSSSCS
T ss_pred hhHHHHHHhhccCCceeeeccccccchhhHHHHHHHh--hcccEEEEeccCCcccccccce---------eeecccccch
Confidence 5566777766667788777766667778899999987 8999999987655432211100 0001111112
Q ss_pred CCHHHHHHHcCCceeeeCCHHHHHHHHHhh----hccCCCEEEEEEcCc
Q 041113 408 ISIQNLCLAHGLNHVQVKTKVELEEALSMS----QHLGTDRVIEVESCI 452 (983)
Q Consensus 408 ~df~~la~a~G~~~~~v~~~~eL~~aL~~a----~~~~~p~lIeV~~~~ 452 (983)
.++.++.+.+--...++++++++.+.+++| ...+||+.||+..|-
T Consensus 122 ~~~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~gPv~i~iP~dv 170 (180)
T d1pvda2 122 TVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANL 170 (180)
T ss_dssp SHHHHHHGGGCSEEEECCCTTTHHHHHHHHHHHHHHHTSCEEEEEETTT
T ss_pred hHHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhCCCCCEEEECCccc
Confidence 345677777766778888877766665555 445899999999875
|
| >d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=95.88 E-value=0.019 Score=54.58 Aligned_cols=106 Identities=11% Similarity=-0.016 Sum_probs=79.7
Q ss_pred hHHHHHhhhhccCceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++-=| |+.-.+..|..+.. .+.|+++|.-+-.....-+ ...+
T Consensus 55 A~~~A~gyar~tg~~gv~~~t~GpG~~n~~~gl~~A~~--~~~Pvl~i~g~~~~~~~~~-----------------~~~Q 115 (184)
T d2djia2 55 GAMAAVMQSKFGGNLGVTVGSGGPGASHLINGLYDAAM--DNIPVVAILGSRPQRELNM-----------------DAFQ 115 (184)
T ss_dssp HHHHHHHHHHTTCCCEEEEECTTHHHHTTHHHHHHHHH--HTCCEEEEEEESCGGGTTT-----------------TCTT
T ss_pred hHHHHHhhhhcccCcceeeccccccccchhHhHHHHHH--hCccceeecccchhhHhhc-----------------Cccc
Confidence 66778888777777777766444 77778899999987 8999999887654332110 1123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+.-...+|++++++.+.+++|+. .+||+.|||..|-
T Consensus 116 ~~d~~~~~~~itk~~~~v~~~~~~~~~~~~A~~~a~~~rGPv~i~iP~Dv 165 (184)
T d2djia2 116 ELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRGVAVLEVPGDF 165 (184)
T ss_dssp CCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEEEEEEETTG
T ss_pred ccccccchhhhcceeeccccchhhHHHHHHHHHHHhCCCCCEEEEeCchh
Confidence 467788889988889999999998888888763 4799999999873
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=95.83 E-value=0.0038 Score=63.18 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=39.0
Q ss_pred CceEEEeCCC--CCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGF--LGTGEEWIPIMKAVSGSARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~--~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~ 980 (983)
+|+|+|+||+ +++...|..+.+.|..++.|+++|+||||.++.
T Consensus 42 ~~~l~c~~~~~~gg~~~~y~~La~~L~~~~~V~al~~pG~~~~e~ 86 (255)
T d1mo2a_ 42 EVTVICCAGTAAISGPHEFTRLAGALRGIAPVRAVPQPGYEEGEP 86 (255)
T ss_dssp SSEEEEECCCSSSCSGGGGHHHHHHHTTTCCEEEECCTTSSTTCC
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHhcCCCceEEEEeCCCcCCCCC
Confidence 6899999995 577889999999999999999999999998864
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=95.45 E-value=0.0061 Score=59.45 Aligned_cols=48 Identities=15% Similarity=0.211 Sum_probs=39.2
Q ss_pred eEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCC
Q 041113 923 SFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLP 973 (983)
Q Consensus 923 ~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~ 973 (983)
|.+.....|+.. .|.|||+||++++...|..+.+.|.+++.+++++.+
T Consensus 11 ~~~~~~~~~~~~---~p~vv~lHG~g~~~~~~~~l~~~l~~~~~~l~~~~~ 58 (209)
T d3b5ea1 11 FPYRLLGAGKES---RECLFLLHGSGVDETTLVPLARRIAPTATLVAARGR 58 (209)
T ss_dssp SCEEEESTTSSC---CCEEEEECCTTBCTTTTHHHHHHHCTTSEEEEECCS
T ss_pred ceeEecCCCCCC---CCEEEEEcCCCCCHHHHHHHHHHhccCcEEEeeccC
Confidence 334444555544 799999999999999999999999999999998764
|
| >d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.42 E-value=0.026 Score=53.05 Aligned_cols=105 Identities=13% Similarity=0.026 Sum_probs=78.5
Q ss_pred hHHHHHhhhhccCceEEEEEcc-chhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGD-ISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GD-Gsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+..++++.+|++-= -|+...++.|.+|.. .++|+++|.-+......- ....+
T Consensus 54 A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gl~~A~~--~~~Pvl~i~g~~~~~~~~-----------------~~~~q 114 (175)
T d1t9ba2 54 AGHMAEGYARASGKPGVVLVTSGPGATNVVTPMADAFA--DGIPMVVFTGQVPTSAIG-----------------TDAFQ 114 (175)
T ss_dssp HHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHHHHHHH--HTCCEEEEEEECCTTTTT-----------------SCCTT
T ss_pred HHHHHHHHHHHhCCceEEEEecCcHHHHHHHHHHHHHH--cCCCEEEEecCCChhhcC-----------------CCccc
Confidence 5667778777777777777644 468888999999987 899999998765432111 01124
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
..|...+.+.+--...++++++++.+.+++|++ ..||+.|||..|
T Consensus 115 ~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~D 164 (175)
T d1t9ba2 115 EADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKD 164 (175)
T ss_dssp CCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred cccHhHhcccceeeeEecCCHHHHHHHHHHHHHHHhcCCCccEEEEcChh
Confidence 578999999998888999999888777777653 367999999876
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.37 E-value=0.0074 Score=58.32 Aligned_cols=48 Identities=15% Similarity=0.103 Sum_probs=40.1
Q ss_pred eecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCC
Q 041113 928 QEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978 (983)
Q Consensus 928 ~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S 978 (983)
...+++. .|.|||+||++++...|..+.+.|.+++.|++++.+..+.+
T Consensus 10 ~~~~~~~---~P~vi~lHG~G~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~ 57 (203)
T d2r8ba1 10 SRAGVAG---APLFVLLHGTGGDENQFFDFGARLLPQATILSPVGDVSEHG 57 (203)
T ss_dssp EECCCTT---SCEEEEECCTTCCHHHHHHHHHHHSTTSEEEEECCSEEETT
T ss_pred cCCCCCC---CCEEEEECCCCCCHHHHHHHHHHhccCCeEEEecccccccc
Confidence 4455544 79999999999999999999999999999999988765543
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=95.34 E-value=0.025 Score=55.28 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=32.1
Q ss_pred ceEEEeCCC---CCC--hhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 939 NILLFLHGF---LGT--GEEWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 939 ~~lv~lHG~---~~~--~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
+.+|++|++ |++ +..+..+.+.|.+ .|.|+.+|+||+|.|...
T Consensus 36 ~~~vl~Hph~~~GG~~~~~~~~~la~~l~~~G~~vlrfd~RG~G~S~g~ 84 (218)
T d2fuka1 36 VTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGS 84 (218)
T ss_dssp EEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCSC
T ss_pred cEEEEECCCCCCCcCCCChHHHHHHHHHHHcCCeEEEeecCCCccCCCc
Confidence 456888844 333 3346678888876 499999999999999864
|
| >d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=95.22 E-value=0.036 Score=53.08 Aligned_cols=105 Identities=12% Similarity=0.061 Sum_probs=79.7
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+-+++++.+|++ ..-|+...+..|.+|.. .+.|+++|.-+......- .+..+
T Consensus 62 A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~gl~~A~~--~~~Pvlvi~g~~~~~~~~-----------------~~~~q 122 (195)
T d1ybha2 62 GVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALL--DSVPLVAITGQVPRRMIG-----------------TDAFQ 122 (195)
T ss_dssp HHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHHHHHHH--HTCCEEEEEEECCGGGTT-----------------TTCTT
T ss_pred HHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHHHHH--cCCCEEEEecCCcHHHhc-----------------cCccc
Confidence 56688888777777777766 44477778899999988 899999998765432111 01124
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
..|...+.+.+--...++++++++.+++++|+. ..||+.||+..|
T Consensus 123 ~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~A~~~a~~~r~GPV~l~iP~D 172 (195)
T d1ybha2 123 ETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (195)
T ss_dssp CCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred ccchhhhhcccccchhhcchHhhcchHHHHHHHHHhcCCCCcEEEECChH
Confidence 578888999988889999999999998888764 368999999875
|
| >d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=95.17 E-value=0.032 Score=52.34 Aligned_cols=106 Identities=14% Similarity=0.038 Sum_probs=75.7
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+-+++++.+|++ .--++.-.+..|..+.. .+.|+++|.-+......-+ +..+
T Consensus 54 A~~~A~gyar~tgk~gv~~~t~GpG~~N~~~gl~~A~~--~~~P~l~i~g~~~~~~~~~-----------------~~~Q 114 (174)
T d2ez9a2 54 GAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDARE--DHVPVLALIGQFGTTGMNM-----------------DTFQ 114 (174)
T ss_dssp HHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHHHHHHH--TTCCEEEEEEECCTTTTTS-----------------CCTT
T ss_pred hHHHHHHHHhhcCceeEEeecccccccchhhhHHHHHh--cCccceeeeccccccccCc-----------------cccc
Confidence 55677777666677877766 44567778899999987 8999999887654332110 1123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
..|...+.+.+--...++++++++.+.+++|+ ..+||+.||++.|-
T Consensus 115 ~~d~~~~~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~pGPv~l~iP~Dv 164 (174)
T d2ez9a2 115 EMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDL 164 (174)
T ss_dssp CCCCHHHHTTTCSEEEECCCSTTHHHHHHHHHHHHHHHTSEEEEEEETTG
T ss_pred cchhhhhhccccccccccccHHHHHHHHHHHHHHHhCCCCCEEEEeCccc
Confidence 46777788777667789999877777666654 46899999999875
|
| >d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron transfer flavoprotein alpha subunit {Methylophilus methylotrophus [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: C-terminal domain of the electron transfer flavoprotein alpha subunit domain: C-terminal domain of the electron transfer flavoprotein alpha subunit species: Methylophilus methylotrophus [TaxId: 17]
Probab=95.12 E-value=0.043 Score=47.06 Aligned_cols=114 Identities=13% Similarity=0.034 Sum_probs=74.0
Q ss_pred eEEEEccCCCh-hHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCCCEEEEe
Q 041113 89 GLLLVGAVHNE-DEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQI 167 (983)
Q Consensus 89 PvIl~G~g~~~-~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~aDlvl~i 167 (983)
-++-+|.|... ...+.+.+||+.+|+-|-.|-.. . -.|.+|.++- +|..| +.+..++|.|.+
T Consensus 9 vVV~~GrG~~~~e~~~~~~eLA~~lga~vg~SRp~-v----d~gw~~~~~q----IG~sG--------~~v~~P~lYia~ 71 (123)
T d3clsd2 9 FIMSIGRGIGEETNVEQFRELADEAGATLCCSCPI-A----DAGWLPKSRQ----VGQSG--------KVVGSCKLYVAM 71 (123)
T ss_dssp EEEEECGGGCSGGGHHHHHHHHHHHTCEEEECHHH-H----HTTSSCGGGB----BSSSS--------BCCTTCSEEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhhcceeeccHH-H----HcCCCChhhe----EecCC--------ccccCCcEEEEE
Confidence 34444556543 44678999999999988665421 0 1355555432 33332 234468999999
Q ss_pred CCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 168 GSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 168 G~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
|-+=...++.+. -....+|-|+.|++.. -+...+..|++|+.+++.+|.+.+
T Consensus 72 GISGa~QH~~Gm---~~s~~IVAIN~D~~Ap-If~~adygiVgD~~evlp~L~~~l 123 (123)
T d3clsd2 72 GISGSIQHMAGM---KHVPTIIAVNTDPGAS-IFTIAKYGIVADIFDIEEELKAQL 123 (123)
T ss_dssp SCCCCHHHHHHH---TTCSEEEEECSCTTCG-GGGTCSEEECSCHHHHHHHHHHHC
T ss_pred cccchHHHHHhc---cCCCEEEEEcCCCCCC-chhhCCEEEEeeHHHHHHHHHhhC
Confidence 987543444432 1234688999998643 235588999999999999998753
|
| >d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=94.72 E-value=0.035 Score=52.87 Aligned_cols=108 Identities=11% Similarity=0.080 Sum_probs=77.8
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ .--++.-.+..|.+|.. .+.|+++|.-+-.... . ....+..+
T Consensus 53 A~~~A~gyar~tg~~~v~~~t~GpG~~n~~~gl~~A~~--~~~Pvl~i~g~~~~~~-~--------------~~~~~~~q 115 (188)
T d2ji7a2 53 AGYAASIAGYIEGKPGVCLTVSAPGFLNGVTSLAHATT--NCFPMILLSGSSEREI-V--------------DLQQGDYE 115 (188)
T ss_dssp HHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHHHHHHH--HTCCEEEEEEECCHHH-H--------------HTTCCCTT
T ss_pred hhhHHHHHHhhhcccceeeccccccccccchhHHHHHH--hcccceEEeccCchhh-h--------------cccccccc
Confidence 56777887777777777755 55567777899999887 8999988886432210 0 00001124
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+--...+|++++++.+.+++|++ ..||+.||+..|-
T Consensus 116 ~~d~~~~~~~~tk~~~~v~~~~~i~~~~~~A~~~a~~~~~GPV~l~iP~dv 166 (188)
T d2ji7a2 116 EMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKL 166 (188)
T ss_dssp CCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHHH
T ss_pred eeeeecccCCcchhhhccccccccHHHHHHHHHHHhCCCCceEEEEcChhH
Confidence 578899999998889999999998888887753 3579999998663
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.59 E-value=0.0099 Score=59.95 Aligned_cols=42 Identities=14% Similarity=0.396 Sum_probs=33.5
Q ss_pred CceEEEeCC--CCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHG--FLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG--~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~ 979 (983)
.|.||++|| ++.....|......|++ .|.|+++|.||+|.+.
T Consensus 39 ~Pviv~~HGG~~~~~~~~~~~~~~~la~~G~~v~~~d~r~~~~~g 83 (260)
T d2hu7a2 39 GPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYG 83 (260)
T ss_dssp EEEEEEECSSSSCCCCSSCCHHHHHHHHHTCEEEEECCTTCSSSC
T ss_pred ceEEEEECCCCccCCCccccHHHHHHHhhccccccceeeeccccc
Confidence 578999998 55556678787777755 5999999999998664
|
| >d1efva2 c.31.1.2 (A:208-331) C-terminal domain of the electron transfer flavoprotein alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: C-terminal domain of the electron transfer flavoprotein alpha subunit domain: C-terminal domain of the electron transfer flavoprotein alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.53 E-value=0.037 Score=47.58 Aligned_cols=114 Identities=12% Similarity=0.084 Sum_probs=74.8
Q ss_pred ceEEEEccCCCh-hHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCCCEEEE
Q 041113 88 KGLLLVGAVHNE-DEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQ 166 (983)
Q Consensus 88 rPvIl~G~g~~~-~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~aDlvl~ 166 (983)
+-++-+|.|... ...+.+.+||+++|+-|-.|-. -+ -.|.+|.++- +|.-|. .-.+++.|+
T Consensus 9 ~ivV~~GrG~~~~e~~~~~~~lA~~lga~vg~SR~-~v----d~gw~~~~~q----IG~SG~---------~V~P~lyia 70 (124)
T d1efva2 9 KVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRA-AV----DAGFVPNDMQ----VGQTGK---------IVAPELYIA 70 (124)
T ss_dssp SEEEEECGGGCSTGGGHHHHHHHHHHTCEEEECHH-HH----HTTSSCGGGB----BSTTSB---------CCCCSEEEE
T ss_pred CEEEECCCCcCCHHHHHHHHHHHHHhCCeeeEeeh-hh----hCCCccccee----ecccce---------EeCCcEEEE
Confidence 445556667653 3467899999999999877542 11 1355665532 343331 126899999
Q ss_pred eCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 167 IGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 167 iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
+|-+=.-.++.+. -....+|-|+.|++.. -+...+..|++|..+++.+|.+.+
T Consensus 71 ~GISGa~QH~~Gi---~~s~~IvAIN~D~~Ap-If~~aD~giVgD~~evlp~L~e~l 123 (124)
T d1efva2 71 VGISGAIQHLAGM---KDSKTIVAINKDPEAP-IFQVADYGIVADLFKVVPEMTEIL 123 (124)
T ss_dssp ESCCCCHHHHTTT---TTCSEEEEEESCTTCG-GGGTCSEEEESCHHHHHHHHHHHT
T ss_pred ecchhHHHHHhhc---cCCCEEEEEeCCCCCC-ccccCCEEEeccHHHHHHHHHHHh
Confidence 9987543333221 1234588999998643 235689999999999999998865
|
| >d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=94.51 E-value=0.037 Score=52.22 Aligned_cols=107 Identities=14% Similarity=0.044 Sum_probs=75.7
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+..++++.++++ .--|+...+..|.++.. .+.|+++|.-+-.....-+. ...+
T Consensus 49 A~~mA~gyar~tgk~~v~~~~~GpG~~n~~~gl~~A~~--~~~Pvlvi~g~~~~~~~g~~----------------~~~q 110 (180)
T d1q6za2 49 VVGIADGYAQASRKPAFINLHSAAGTGNAMGALSNAWN--SHSPLIVTAGQQTRAMIGVE----------------ALLT 110 (180)
T ss_dssp HHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHHHHHHH--TTCCEEEEEEECCHHHHTTT----------------CTTC
T ss_pred HHHHHHHHhhhccCcceEEeccccccccccceeHhhhh--cccceeeecccccccccccc----------------ccch
Confidence 56688888777777766655 55688888999999988 89999998876432211100 0112
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+=-...+|++++++.+.|++|++ ..||+.|||..|-
T Consensus 111 ~~D~~~~~~~~tK~~~~v~~~~~i~~~l~~A~~~a~~~~~GPv~l~iP~D~ 161 (180)
T d1q6za2 111 NVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD 161 (180)
T ss_dssp CTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred hhheeecccccccccccCCCHHHHHHHHHHHHHHHhcCCCccEEEEcChhH
Confidence 356666666665567899999999888888763 3689999999774
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.05 E-value=0.2 Score=51.98 Aligned_cols=122 Identities=18% Similarity=0.226 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChH----HHHHHHHHHHHHcCCCcEEE--EEc---
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPI----KDAEVIQEVRKKVGHRIELR--VDA--- 708 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~----~d~~~v~~vr~~~g~~~~l~--vDa--- 708 (983)
+++.+.|+.+.+.||..+-|+.+.. .+++ -=++.|++||+++|+++.+. +-+
T Consensus 141 ~~f~~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~ 220 (330)
T d1ps9a1 141 DNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDL 220 (330)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECC
T ss_pred HHHHHHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEeccccccc
Confidence 4566777778889999999998642 1222 12678999999999886443 322
Q ss_pred -CCCCCHHHHHHHHhhcccCCCceee-------cCC-------C--ChHH-HHHHHhhcCCcEEeCCCccCcCCChHHHH
Q 041113 709 -NRNWTYQEALEFGFLIKDCDLQYIE-------EPV-------Q--NEED-IIKYCEESGLPVALDETIDKFQKDPLNML 770 (983)
Q Consensus 709 -N~~~~~~~a~~~~~~l~~~~i~~iE-------eP~-------~--~~~~-~~~l~~~~~ipIa~dEs~~~~~~~~~~~~ 770 (983)
.++++.++++++++.|++.++.++. ... + .... .+++++.+++||...=.+.+.. ..
T Consensus 221 ~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~-----~a 295 (330)
T d1ps9a1 221 VEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQ-----VA 295 (330)
T ss_dssp STTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHH-----HH
T ss_pred ccCCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHHHHHHhhCCceEEEeCCCCCHH-----HH
Confidence 4678999999999999987776654 122 1 1122 3567777889988776666653 34
Q ss_pred HhhcCCC-ceEEEE
Q 041113 771 EKYAHPG-IVAIVI 783 (983)
Q Consensus 771 ~~~~~~~-~~~i~~ 783 (983)
..+++.| +|.|-+
T Consensus 296 e~~l~~g~~D~V~~ 309 (330)
T d1ps9a1 296 DDILSRGDADMVSM 309 (330)
T ss_dssp HHHHHTTSCSEEEE
T ss_pred HHHHHCCCcchhHh
Confidence 5555555 677643
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=93.09 E-value=0.029 Score=56.47 Aligned_cols=41 Identities=10% Similarity=0.002 Sum_probs=36.7
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S 978 (983)
-|.|||+||++++...+..+.+.|+++ |-|+++|.+|++..
T Consensus 52 ~P~Vv~~HG~~g~~~~~~~~a~~lA~~Gy~V~~~d~~~~~~~ 93 (260)
T d1jfra_ 52 FGAVVISPGFTAYQSSIAWLGPRLASQGFVVFTIDTNTTLDQ 93 (260)
T ss_dssp EEEEEEECCTTCCGGGTTTHHHHHHTTTCEEEEECCSSTTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHHhCCCEEEEEeeCCCcCC
Confidence 378999999999999999999999875 99999999998764
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.62 E-value=0.16 Score=49.13 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=32.3
Q ss_pred CceEEEeCCCC---CChh--hHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFL---GTGE--EWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~---~~~~--~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
.+.+|++||.+ ++.. ....+.+.|.+ .|.|+.+|+||.|.|...
T Consensus 24 ~~~~l~~Hp~p~~GG~~~~~~~~~~a~~l~~~G~~~lrfn~RG~g~S~G~ 73 (218)
T d2i3da1 24 APIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGE 73 (218)
T ss_dssp CCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCSC
T ss_pred CCEEEEECCCcCcCCcCCcHHHHHHHHHHHhcCeeEEEEecCccCCCccc
Confidence 57899999853 4432 24456666654 599999999999999753
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=92.38 E-value=0.51 Score=48.80 Aligned_cols=121 Identities=21% Similarity=0.243 Sum_probs=82.3
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHH----HHHHHHHHHHHcCCCcEEEEEcC----
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIK----DAEVIQEVRKKVGHRIELRVDAN---- 709 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~----d~~~v~~vr~~~g~~~~l~vDaN---- 709 (983)
+++.+.|+.+++.||..+.|+.+.. .+++. =++.|++||++++..+.+++-++
T Consensus 143 ~~f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~ 222 (337)
T d1z41a1 143 QEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTD 222 (337)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCST
T ss_pred HHHHHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceEEeccccccc
Confidence 4566677777889999999998632 12222 25789999999988888887764
Q ss_pred CCCCHHHHHHHHhhcccCCCceeecCCC-------------ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 710 RNWTYQEALEFGFLIKDCDLQYIEEPVQ-------------NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 710 ~~~~~~~a~~~~~~l~~~~i~~iEeP~~-------------~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
++++.++.+.+++.|++.++.+++=-.. ..+--+.+++..++||..-=.+.+.. ....+++.
T Consensus 223 ~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~-----~ae~~l~~ 297 (337)
T d1z41a1 223 KGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGS-----MAEEILQN 297 (337)
T ss_dssp TSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHH-----HHHHHHHT
T ss_pred CccchhhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhcCceEEEeCCcCCHH-----HHHHHHHC
Confidence 4579999999999999988776543211 12223567777888887755555543 34445544
Q ss_pred C-ceEEE
Q 041113 777 G-IVAIV 782 (983)
Q Consensus 777 ~-~~~i~ 782 (983)
| +|.|-
T Consensus 298 g~~D~V~ 304 (337)
T d1z41a1 298 GRADLIF 304 (337)
T ss_dssp TSCSEEE
T ss_pred CCcceeh
Confidence 4 67654
|
| >d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=92.00 E-value=0.18 Score=47.08 Aligned_cols=113 Identities=12% Similarity=-0.042 Sum_probs=71.4
Q ss_pred hHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHN 407 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (983)
+.-+|-|.+..+++++|+++---|+...+..|..|.. .++|+++|.-.......-+...+ .........
T Consensus 53 A~~~A~gyar~t~~~~v~~t~GpG~~n~~~gl~~A~~--~~~Pvl~isg~~~~~~~~~~~~~---------~~~~~~~~~ 121 (178)
T d1ovma2 53 ASYAADGYARCKGFAALLTTFGVGELSAMNGIAGSYA--EHVPVLHIVGAPGTAAQQRGELL---------HHTLGDGEF 121 (178)
T ss_dssp HHHHHHHHHHHHSCEEEEEETTHHHHHTHHHHHHHHH--TTCCEEEEEEECCHHHHHHTCCC---------TTSCSSSCC
T ss_pred hHHHHHHHHhcCCCceEEeeccccccccchhhhHHHh--cCccEEEEecCCCchhhcccccc---------ccccccchh
Confidence 5667777766667787766543456777899999988 89999888775443221111000 000111112
Q ss_pred CCHHHHHHHcCCceeeeCCHHHHHHHHHhh---hccCCCEEEEEEcC
Q 041113 408 ISIQNLCLAHGLNHVQVKTKVELEEALSMS---QHLGTDRVIEVESC 451 (983)
Q Consensus 408 ~df~~la~a~G~~~~~v~~~~eL~~aL~~a---~~~~~p~lIeV~~~ 451 (983)
-|+..+.+.+-....++++.+++.+.++.+ ...+||+.|+|..|
T Consensus 122 ~~~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~a~~~~~Pv~i~iP~D 168 (178)
T d1ovma2 122 RHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPGYLMLPAD 168 (178)
T ss_dssp SHHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHHTCCEEEEEEHH
T ss_pred hhccccccccceeEEEeCcHHHHHHHHHHHHHHHhCCCCEEEEEChH
Confidence 356777777766778888887776655544 34589999999765
|
| >d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: Sirt2 histone deacetylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.81 E-value=0.31 Score=49.83 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=53.3
Q ss_pred cccCCCCEEEEeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCC------------------CCCCeeEEEEcCHHHHH
Q 041113 156 KDWIQFDVIIQIGSRITSKRISQMIEECFP-CTYILVDNHPCRHD------------------PSHSVTHRIQSTIVQFV 216 (983)
Q Consensus 156 ~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~------------------~~~~~~~~i~~d~~~~l 216 (983)
+.+.+||++|++|+++.-..........+. ...|.|+.++.... .....|+.+.||+.+++
T Consensus 216 ~~~~~aDllIViGTSL~V~Paa~l~~~a~~~~~~v~IN~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~gdcd~~~ 295 (323)
T d1j8fa_ 216 SDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQGC 295 (323)
T ss_dssp HGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHHHHH
T ss_pred HHHhCCCEEEEECCCCeecCHHHHHHHHHcCCCEEEEECCCCCCCCccchhhccccccccccccCCcceEEEccCHHHHH
Confidence 346789999999999865555544433322 24566887765321 11235899999999999
Q ss_pred HHHHhccCCCCChhHHHHHHHHHH
Q 041113 217 DFLLKVQVPHRSSKWCSFLRALDM 240 (983)
Q Consensus 217 ~~L~~~~~~~~~~~w~~~~~~~~~ 240 (983)
..|.+.+ .|.+++....+
T Consensus 296 ~~l~~~l------gw~~e~~~l~~ 313 (323)
T d1j8fa_ 296 LALAELL------GWKKELEDLVR 313 (323)
T ss_dssp HHHHHHT------TCHHHHHHHHH
T ss_pred HHHHHHc------CCHHHHHHHHH
Confidence 9999887 36666655444
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.61 E-value=0.11 Score=50.70 Aligned_cols=37 Identities=24% Similarity=0.513 Sum_probs=31.5
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhh-CCCEEEEEcCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVS-GSARCISIDLPG 974 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~-~~~~vi~~Dl~G 974 (983)
.++|||+||+|++...|..++..+. .++.++++|-|.
T Consensus 21 ~~~VI~lHG~G~~~~~~~~~~~~l~~~~~~~v~p~Ap~ 58 (229)
T d1fj2a_ 21 TAAVIFLHGLGDTGHGWAEAFAGIRSSHIKYICPHAPV 58 (229)
T ss_dssp SEEEEEECCSSSCHHHHHHHHHTTCCTTEEEEECCCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 5689999999999999999888775 458999988764
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=89.73 E-value=0.55 Score=49.11 Aligned_cols=120 Identities=18% Similarity=0.088 Sum_probs=78.7
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChH----HHHHHHHHHHHHcCCCc-EEEEEc----
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPI----KDAEVIQEVRKKVGHRI-ELRVDA---- 708 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~----~d~~~v~~vr~~~g~~~-~l~vDa---- 708 (983)
++.++.++.+++.||..+-|+.+.+ .+++ --++.|++||+++|++. -+++-.
T Consensus 160 ~~f~~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~ 239 (363)
T d1vyra_ 160 NDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 239 (363)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCB
T ss_pred HHHHHHHHHHHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccc
Confidence 4566777788889999999998652 1222 13678999999999774 344432
Q ss_pred ----CCCCCHHHHHHHHhhcccCCCceeecCCC--------ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 709 ----NRNWTYQEALEFGFLIKDCDLQYIEEPVQ--------NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 709 ----N~~~~~~~a~~~~~~l~~~~i~~iEeP~~--------~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
.+.++.++++.+++.|++.++.||+=-.. ...-.+.+++.+.+|+...=. .+. +....+++.
T Consensus 240 ~~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~~~~~~~~~~~~~~~~~~~~~~~vi~~G~-~t~-----~~ae~~l~~ 313 (363)
T d1vyra_ 240 QNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGA-YTA-----EKAEDLIGK 313 (363)
T ss_dssp TTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESS-CCH-----HHHHHHHHT
T ss_pred cchhhcccchHHHHHHHHHHHhcCCeeeecccCCccCCccccHHHHHHHHHhcCceEEecCC-CCH-----HHHHHHHHC
Confidence 24668899999999999999988864422 122224566677777666542 232 234455554
Q ss_pred C-ceEEE
Q 041113 777 G-IVAIV 782 (983)
Q Consensus 777 ~-~~~i~ 782 (983)
| +|.|-
T Consensus 314 G~~DlV~ 320 (363)
T d1vyra_ 314 GLIDAVA 320 (363)
T ss_dssp TSCSEEE
T ss_pred CCcceeh
Confidence 4 56654
|
| >d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: NAD-dependent deacetylase CobB species: Escherichia coli [TaxId: 562]
Probab=88.43 E-value=0.14 Score=50.28 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=45.4
Q ss_pred ccCCCCEEEEeCCccccHHHHHHHHh--cCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 157 DWIQFDVIIQIGSRITSKRISQMIEE--CFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 157 ~~~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
.+.+||++|++|+++.-.....+... ....++|.|+.++...+. ..++.|.+++.++|..|.+.+
T Consensus 164 ~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~iiiIN~~~t~~~~--~~~~~i~g~a~e~l~~l~~~l 230 (235)
T d1s5pa_ 164 ALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGN--EFAEKYYGPASQVVPEFVEKL 230 (235)
T ss_dssp HHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC-----CCSEEEESCHHHHHHHHHHHH
T ss_pred HHHhCCEEEEEccCCcccCHHHHHHHHHHcCCeEEEECCCCCCCCC--cccEEEeCCHHHHHHHHHHHH
Confidence 45789999999999865444333322 234568889998876654 457889999999999887654
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=86.72 E-value=0.18 Score=52.73 Aligned_cols=59 Identities=24% Similarity=0.294 Sum_probs=41.4
Q ss_pred eEEEEeecCCccCCCCceEEEeCCCCCChhh---------HHHHH---HHhh-CCCEEEEEcCCCCCCCCCC
Q 041113 923 SFIKVQEIGQRIDIQDNILLFLHGFLGTGEE---------WIPIM---KAVS-GSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 923 ~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~---------w~~~~---~~l~-~~~~vi~~Dl~G~G~S~~~ 981 (983)
.++.|...|+-+....+.||+.|++.++++. |..++ ..|. ++|.||++|+.|.|.++.+
T Consensus 24 ~~laY~t~G~ln~~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyfVI~~n~lG~~~gSs~ 95 (357)
T d2b61a1 24 INVAYQTYGTLNDEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTG 95 (357)
T ss_dssp EEEEEEEESCCCTTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSC
T ss_pred ceEEEEeecccCCCCCCEEEEcCCCCccccccccCCCCCcHHHhcCCCCccCCCceEEEEecccCCccccCC
Confidence 4556677775332224789999999998764 56664 3443 5699999999998875543
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=85.61 E-value=0.6 Score=47.46 Aligned_cols=127 Identities=16% Similarity=0.234 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCC--------------CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARR--------------ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEAL 718 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~--------------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~ 718 (983)
+.+|+++.+.+ +.++.||..|-+-+|.| .+++.-.+.|+++++.+ ++.+.+=-.-+|+.++..
T Consensus 63 g~~p~~~~~aa-~~~~~~~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~--~~pvsvK~RlG~d~~~~~ 139 (305)
T d1vhna_ 63 GSEPNELSEAA-RILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSV--SGKFSVKTRLGWEKNEVE 139 (305)
T ss_dssp CSCHHHHHHHH-HHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHC--SSEEEEEEESCSSSCCHH
T ss_pred ccchhhhhhhh-hhhhhheeeeeEEEEecchhhcccccceeeccCHHHHHHHhhhhhhhc--ccccccccccCcccchhh
Confidence 46788888766 56678999999999875 25666677889999887 355555555567666777
Q ss_pred HHHhhcccCCCcee-------ecCCC---ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhc-CCCceEEEEcCCC
Q 041113 719 EFGFLIKDCDLQYI-------EEPVQ---NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA-HPGIVAIVIKPSV 787 (983)
Q Consensus 719 ~~~~~l~~~~i~~i-------EeP~~---~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~-~~~~~~i~~k~~~ 787 (983)
++++.+++.|+.+| +|... +|+.++++++ .+||.+.=.+.+..| ..... ..|+|.+.+==+-
T Consensus 140 ~~~~~l~~~G~~~itvH~Rt~~q~~~~~a~~~~i~~~~~--~ipvi~NGdI~s~~d-----~~~~l~~tg~dgVMiGRga 212 (305)
T d1vhna_ 140 EIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK--RIPTFVSGDIFTPED-----AKRALEESGCDGLLVARGA 212 (305)
T ss_dssp HHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC--SSCEEEESSCCSHHH-----HHHHHHHHCCSEEEESGGG
T ss_pred HHHHHHHHhCCcEEEechhhhhhccccchhhhHHHhhhh--hhhhhcccccccHHH-----HHHHHHhcCCCeEehhHHH
Confidence 88888988887766 44432 5777777765 478777666777653 33333 3578888874444
Q ss_pred cC
Q 041113 788 IG 789 (983)
Q Consensus 788 ~G 789 (983)
.|
T Consensus 213 l~ 214 (305)
T d1vhna_ 213 IG 214 (305)
T ss_dssp TT
T ss_pred HH
Confidence 33
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.48 E-value=0.55 Score=46.11 Aligned_cols=40 Identities=20% Similarity=-0.074 Sum_probs=25.7
Q ss_pred ceEEEeCCCC-----CChhhHHHHHHHhh-CCCEEEEEcCCCCCCC
Q 041113 939 NILLFLHGFL-----GTGEEWIPIMKAVS-GSARCISIDLPGHGGS 978 (983)
Q Consensus 939 ~~lv~lHG~~-----~~~~~w~~~~~~l~-~~~~vi~~Dl~G~G~S 978 (983)
|.||++||.+ .+..........++ ..|-|+++|.||+|.+
T Consensus 33 P~iv~~HGGp~~~~~~~~~~~~~~~~~~a~~g~~V~~~d~rg~~~~ 78 (258)
T d2bgra2 33 PLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQ 78 (258)
T ss_dssp EEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSS
T ss_pred eEEEEEcCCCCcccCCCccCcCHHHHHHhcCCcEEEeecccccCCc
Confidence 7899999931 22222222333444 4699999999998754
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=84.81 E-value=0.21 Score=52.34 Aligned_cols=60 Identities=17% Similarity=0.224 Sum_probs=42.1
Q ss_pred eEEEEeecCCccCCCCceEEEeCCCCCChh-------------hHHHHH---HHhh-CCCEEEEEcCCCCCCCCCCC
Q 041113 923 SFIKVQEIGQRIDIQDNILLFLHGFLGTGE-------------EWIPIM---KAVS-GSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 923 ~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~-------------~w~~~~---~~l~-~~~~vi~~Dl~G~G~S~~~~ 982 (983)
.++.|...|+-+....+.||+.|++.++++ .|..++ ..|. ++|.||++|+.|.|.|+.++
T Consensus 27 ~~l~Y~t~G~ln~~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~lDt~~yfVI~~n~lG~~~~ss~~ 103 (362)
T d2pl5a1 27 VVIAYETYGTLSSSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGCKGSSGP 103 (362)
T ss_dssp EEEEEEEEECCCTTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSSSSSST
T ss_pred ceEEEEeeeccCCCCCCEEEECCCCCcchhccccCCccCCCcchHHHhcCCCCccCccccEEEeeccccCcccccCc
Confidence 556667666532222478999999999863 366665 2343 46999999999999887653
|
| >d1pnoa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Transhydrogenase domain III (dIII) domain: Transhydrogenase domain III (dIII) species: Rhodospirillum rubrum [TaxId: 1085]
Probab=84.61 E-value=0.29 Score=43.96 Aligned_cols=139 Identities=12% Similarity=0.102 Sum_probs=72.4
Q ss_pred hHHHHHHHHhcCCceEEEEccCCC-hhHHH---HHHHHHHhcCCcEEe--ccccCccchhhhhhhhhhccccccccc---
Q 041113 75 QMAEVLELVQGVNKGLLLVGAVHN-EDEIW---AVLHLARHIRWPVVA--DILSGLRLRKLLASFLETEQNILFLDH--- 145 (983)
Q Consensus 75 ~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~---~l~~lae~l~~Pv~~--t~~sg~~~~~~kg~~~~~hp~~~~~g~--- 145 (983)
..++++.+|..|++.+|+-|+|.. ..+.. +|.++.+..|+-|-- .|-+| -.|. |=+.| +.-
T Consensus 12 sa~d~a~~L~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~g~~V~faIHPVAG--------RMPG-HmNVL-LAEa~V 81 (180)
T d1pnoa_ 12 SAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAG--------RMPG-HMNVL-LAEANV 81 (180)
T ss_dssp CHHHHHHHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCT--------TSTT-HHHHH-HHHTTC
T ss_pred CHHHHHHHHHcCCeEEEECCchHHHHHHHHHHHHHHHHHHhcCcceEEEeehhhh--------hhhc-chhhe-eeeecC
Confidence 456788999999999999999854 33333 444555555655532 23222 2332 11100 000
Q ss_pred -hhh-hccCccccccCCCCEEEEeCCccccHHHHH---HHH--------hcCCceEEEEcCCCC--CCC---C--CCCee
Q 041113 146 -LDH-ALLSESVKDWIQFDVIIQIGSRITSKRISQ---MIE--------ECFPCTYILVDNHPC--RHD---P--SHSVT 205 (983)
Q Consensus 146 -~g~-~~~~~~~~~~~~aDlvl~iG~~~~~~~~~~---~~~--------~~~~~~~i~id~d~~--~~~---~--~~~~~ 205 (983)
|+. .-....+..+.+.|++|+||+.-.-..... .++ -+..+++|.+..+-. .-+ + +...+
T Consensus 82 pYd~v~emdeiN~~f~~~Dv~lViGANDvVNPaA~~dp~spi~GMPvl~v~kak~Viv~KRsm~~GyaGv~NpLF~~~nt 161 (180)
T d1pnoa_ 82 PYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNT 161 (180)
T ss_dssp CGGGEEEHHHHGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGTSTTE
T ss_pred CHHHHcChhhhcchhhhccEEEEecccceeChhhhcCCCCcccCCceeeeecCCEEEEEECCccCCcCCCCCcceEcCCc
Confidence 110 011133445789999999998632111110 000 111234555543221 111 1 12345
Q ss_pred EEEEcCHHHHHHHHHhcc
Q 041113 206 HRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 206 ~~i~~d~~~~l~~L~~~~ 223 (983)
.-+.||++..+++|...+
T Consensus 162 ~MlfGDAK~~l~~l~~~l 179 (180)
T d1pnoa_ 162 MMLFGDAKKMTEQIVQAM 179 (180)
T ss_dssp EEEESCHHHHHHHHHHHH
T ss_pred EEEechHHHHHHHHHHhc
Confidence 667999999999987653
|
| >d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: Hst2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.57 E-value=0.7 Score=46.57 Aligned_cols=66 Identities=12% Similarity=0.144 Sum_probs=44.4
Q ss_pred cCCCCEEEEeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCC--CCCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 158 WIQFDVIIQIGSRITSKRISQMIEECFP-CTYILVDNHPCRH--DPSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 158 ~~~aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~--~~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
..+||++|+||+++.-..........+. .++|.|+.++..- ......++.|.+|+..++..|.+.+
T Consensus 209 ~~~aDlllviGTSl~V~Pa~~l~~~a~~~~~~viIN~e~~~~~~~~~~~~Dl~I~g~~~~vl~~L~~~L 277 (289)
T d1q1aa_ 209 HPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEEL 277 (289)
T ss_dssp -CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHH
T ss_pred cccCCEEEEECCCceecCHHHHHHHHHcCCCEEEEeCCCCCCcccccCCcCEEEeCCHHHHHHHHHHHc
Confidence 3589999999999854443333333332 3466688866320 1224567999999999999999876
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=83.99 E-value=3.4 Score=38.94 Aligned_cols=139 Identities=15% Similarity=0.223 Sum_probs=103.9
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..+.++..+.++.+++.|++.|-+-... ..-.+.++++++.+ |+ +.+=+..-.|.+++.+.. +.|..|+
T Consensus 22 ~~~~~~~~~~~~al~~~Gi~~iEitl~~----~~a~~~I~~l~~~~-p~--~~vGaGTV~~~~~~~~a~----~aGa~Fi 90 (212)
T d1vhca_ 22 LDNADDILPLADTLAKNGLSVAEITFRS----EAAADAIRLLRANR-PD--FLIAAGTVLTAEQVVLAK----SSGADFV 90 (212)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEETTS----TTHHHHHHHHHHHC-TT--CEEEEESCCSHHHHHHHH----HHTCSEE
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCC----hhHHHHHHHHHhcC-CC--ceEeeeecccHHHHHHHH----hhCCcEE
Confidence 4567888888999999999999998854 23467889999998 45 667788888999887664 4688899
Q ss_pred ecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCC-CcCCHHHHHHHHHHHHHcCCcEEeC
Q 041113 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPS-VIGGFENAGLIARWAQRHGKMAVVS 811 (983)
Q Consensus 733 EeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~-~~GGl~~~~~~~~~A~~~gi~~~~~ 811 (983)
=-|.- -.++.+.+.+.++|+.-|=.-.+ .+....+.|++++.+=|. .+||+.-...+...-. +++++..
T Consensus 91 vSP~~-~~~v~~~a~~~~i~~iPGv~Tps-------Ei~~A~~~G~~~vK~FPA~~~gG~~~lkal~~p~p--~~~~~pt 160 (212)
T d1vhca_ 91 VTPGL-NPKIVKLCQDLNFPITPGVNNPM-------AIEIALEMGISAVKFFPAEASGGVKMIKALLGPYA--QLQIMPT 160 (212)
T ss_dssp ECSSC-CHHHHHHHHHTTCCEECEECSHH-------HHHHHHHTTCCEEEETTTTTTTHHHHHHHHHTTTT--TCEEEEB
T ss_pred ECCCC-CHHHHHHHHhcCCCccCCcCCHH-------HHHHHHHCCCCEEEEccccccchHHHHHHHhcccc--CCeEEec
Confidence 99988 56777777788999988755333 355566789999998885 6888876666555433 5776544
Q ss_pred C
Q 041113 812 A 812 (983)
Q Consensus 812 ~ 812 (983)
+
T Consensus 161 G 161 (212)
T d1vhca_ 161 G 161 (212)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=83.93 E-value=3.4 Score=39.03 Aligned_cols=139 Identities=14% Similarity=0.137 Sum_probs=104.9
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..++++..+.++.+++.|++.+-+-... ..-.+.++.+|+.+ |+ +.+=+-.-.|.+++.+..+ .|..|+
T Consensus 25 ~~~~~~a~~~~~al~~~Gi~~iEitl~~----p~a~~~i~~l~~~~-p~--~~vGaGTV~~~~~~~~a~~----aGa~Fi 93 (216)
T d1mxsa_ 25 IAREEDILPLADALAAGGIRTLEVTLRS----QHGLKAIQVLREQR-PE--LCVGAGTVLDRSMFAAVEA----AGAQFV 93 (216)
T ss_dssp CSCGGGHHHHHHHHHHTTCCEEEEESSS----THHHHHHHHHHHHC-TT--SEEEEECCCSHHHHHHHHH----HTCSSE
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCC----hhHHHHHHHHHHhC-CC--cceeeeeeecHHHHHHHHh----CCCCEE
Confidence 4578889999999999999999998753 24578899999999 45 5677888889998766544 688888
Q ss_pred ecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCC-CcCCHHHHHHHHHHHHHcCCcEEeC
Q 041113 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPS-VIGGFENAGLIARWAQRHGKMAVVS 811 (983)
Q Consensus 733 EeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~-~~GGl~~~~~~~~~A~~~gi~~~~~ 811 (983)
=-|.- -.++.+.+.+.++|..-|=.-.+ .+....+.|++.+.+=|. ..||..-...+...-- +++++..
T Consensus 94 vsP~~-~~~v~~~a~~~~i~~iPGv~Tps-------Ei~~A~~~G~~~vKlFPA~~~~g~~~ikal~~p~p--~~~fipt 163 (216)
T d1mxsa_ 94 VTPGI-TEDILEAGVDSEIPLLPGISTPS-------EIMMGYALGYRRFKLFPAEISGGVAAIKAFGGPFG--DIRFCPT 163 (216)
T ss_dssp ECSSC-CHHHHHHHHHCSSCEECEECSHH-------HHHHHHTTTCCEEEETTHHHHTHHHHHHHHHTTTT--TCEEEEB
T ss_pred ECCCC-cHHHHHHHHhcCCCccCCcCCHH-------HHHHHHHCCCCEEEeccccccccHHHHHHHhcccc--cCceecc
Confidence 89988 56677777788999888754333 355667789999998886 4788877666655443 5776544
Q ss_pred C
Q 041113 812 A 812 (983)
Q Consensus 812 ~ 812 (983)
+
T Consensus 164 G 164 (216)
T d1mxsa_ 164 G 164 (216)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: NAD-dependent deacetylase sirtuin-5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.62 E-value=0.18 Score=50.50 Aligned_cols=63 Identities=6% Similarity=0.035 Sum_probs=44.2
Q ss_pred cccCCCCEEEEeCCccccHHHHHHHHhc--CCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHH
Q 041113 156 KDWIQFDVIIQIGSRITSKRISQMIEEC--FPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLL 220 (983)
Q Consensus 156 ~~~~~aDlvl~iG~~~~~~~~~~~~~~~--~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~ 220 (983)
+.+++||++|++|+++.-.......... ...++|.|+.++...+. ..++.|.+|+.++|.+|+
T Consensus 202 ~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vv~IN~~~t~~d~--~~d~~i~g~~~~vL~~l~ 266 (267)
T d2b4ya1 202 RELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATN--RFRFHFQGPCGTTLPEAL 266 (267)
T ss_dssp HHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCCEEEEESSCCTTGG--GSSEEEESCHHHHHHHHT
T ss_pred HhhhhCCeEEEECCCCeecCHHHHHHHHHHcCCcEEEEeCCCCCCCC--ccCEEEeCCHHHHHHHHh
Confidence 3457899999999987544433332222 23467789988865543 457899999999998875
|
| >d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: NAD-dependent deacetylase NpdA species: Thermotoga maritima [TaxId: 2336]
Probab=83.35 E-value=0.16 Score=50.27 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=46.7
Q ss_pred ccCCCCEEEEeCCccccHHHHHHHH--hcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 157 DWIQFDVIIQIGSRITSKRISQMIE--ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 157 ~~~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
.++++|++|++|+++.-........ .....++|.|+.++..++. ..++.+.+|+.++|..|.+.+
T Consensus 177 ~~~~~DlllviGTSl~V~p~~~l~~~a~~~g~~~i~IN~~~t~~d~--~~d~~i~g~~~e~l~~l~~~l 243 (245)
T d1yc5a1 177 LSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDD--IATLKYNMDVVEFARRVMEEG 243 (245)
T ss_dssp HHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHH
T ss_pred HhhcCCEEEEECCCeEEechhhhhHHHHHcCCeEEEECCCCCCCCc--ceeEEEeCCHHHHHHHHHHHc
Confidence 4578999999999975444332222 1123467889998876553 368899999999999998754
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=82.20 E-value=0.28 Score=50.91 Aligned_cols=43 Identities=14% Similarity=0.013 Sum_probs=31.0
Q ss_pred CceEEEeCCCCCC-hhhHH---HHHHHh-hCCCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGT-GEEWI---PIMKAV-SGSARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~-~~~w~---~~~~~l-~~~~~vi~~Dl~G~G~S~~ 980 (983)
-|.||+.||++.. ...+. .....| ++.|-|+++|.||+|.|..
T Consensus 31 ~P~il~~~pyg~~~~~~~~~~~~~~~~~a~~GY~vv~~d~RG~g~S~G 78 (347)
T d1ju3a2 31 VPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEG 78 (347)
T ss_dssp EEEEEEEESSCTTCCHHHHTTSCCTHHHHHTTCEEEEEECTTSTTCCS
T ss_pred EEEEEEEcCCCCccccCcCcccHHHHHHHHCCCEEEEEeeCCccccCC
Confidence 4789999998753 22332 233445 4569999999999999984
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=81.95 E-value=0.45 Score=49.95 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=41.6
Q ss_pred eeEEEEeecCCccCCCCceEEEeCCCCCChh---hHHHHH---HHhh-CCCEEEEEcCCCCCCCCC
Q 041113 922 CSFIKVQEIGQRIDIQDNILLFLHGFLGTGE---EWIPIM---KAVS-GSARCISIDLPGHGGSKM 980 (983)
Q Consensus 922 ~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~---~w~~~~---~~l~-~~~~vi~~Dl~G~G~S~~ 980 (983)
..++.|...|+-+....+.||+.|++.++++ .|..++ ..|. ++|.||++|++|-|.++.
T Consensus 28 ~~~laY~t~G~ln~~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfVI~~n~lG~~~gst 93 (376)
T d2vata1 28 DVPVAYKSWGRMNVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSPFGSA 93 (376)
T ss_dssp EEEEEEEEESCCCTTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCSSSSS
T ss_pred CceEEEEeecccCCCCCCEEEEcCCCcCCccccccHHHhCCCCCccCccceEEEEeccCCCCcCCC
Confidence 3566778888633222468999999998875 356654 3443 569999999999886553
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=81.47 E-value=5.7 Score=37.31 Aligned_cols=139 Identities=18% Similarity=0.163 Sum_probs=102.2
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..++++....++.+++.|++.|-+-.-. ..-.+.++++++.+ |+ +.+=+-.-.|.+++.+.. +.|..|+
T Consensus 23 ~~~~~~a~~~~~al~~~Gi~~iEitl~t----p~a~~~I~~l~~~~-p~--~~vGaGTV~~~~~~~~a~----~aGa~Fi 91 (213)
T d1wbha1 23 VKKLEHAVPMAKALVAGGVRVLNVTLRT----ECAVDAIRAIAKEV-PE--AIVGAGTVLNPQQLAEVT----EAGAQFA 91 (213)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEESCS----TTHHHHHHHHHHHC-TT--SEEEEESCCSHHHHHHHH----HHTCSCE
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCC----hhHHHHHHHHHHHC-CC--CeeeccccccHHHHHHHH----HCCCcEE
Confidence 4678889999999999999999998743 23477899999999 45 457788888999886654 3688899
Q ss_pred ecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCC-CcCCHHHHHHHHHHHHHcCCcEEeC
Q 041113 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPS-VIGGFENAGLIARWAQRHGKMAVVS 811 (983)
Q Consensus 733 EeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~-~~GGl~~~~~~~~~A~~~gi~~~~~ 811 (983)
=-|.- -.++.+...+.++|..-|=.-.+ .+....+.|++.+.+=|. ..||+.-...+.... -+++++..
T Consensus 92 vSP~~-~~~v~~~a~~~~i~~iPGv~Tps-------Ei~~A~~~G~~~vKlFPA~~~Gg~~~lkal~~p~--p~~~~~pt 161 (213)
T d1wbha1 92 ISPGL-TEPLLKAATEGTIPLIPGISTVS-------ELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPF--SQVRFCPT 161 (213)
T ss_dssp EESSC-CHHHHHHHHHSSSCEEEEESSHH-------HHHHHHHTTCCEEEETTTTTTTHHHHHHHHHTTC--TTCEEEEB
T ss_pred ECCCC-CHHHHHHHHhcCCCccCCcCCHH-------HHHHHHHCCCCEEEeccchhcChHHHHHHhcCcc--cCCceeee
Confidence 89988 56676777778899888755333 245556679999888886 578776655555443 25665544
Q ss_pred C
Q 041113 812 A 812 (983)
Q Consensus 812 ~ 812 (983)
+
T Consensus 162 G 162 (213)
T d1wbha1 162 G 162 (213)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: AF0112, Sir2 homolog (Sir2-AF2) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=81.27 E-value=0.27 Score=48.74 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=46.4
Q ss_pred ccCCCCEEEEeCCccccHHHHHHHHh--cCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 157 DWIQFDVIIQIGSRITSKRISQMIEE--CFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 157 ~~~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
.+++||++|+||+++.-.....+... ....++|.|+.++...+. ..++.|.+|+..+|..|.+.+
T Consensus 180 ~~~~~dl~LviGTSl~V~p~~~~~~~a~~~~~~~i~IN~~~~~~d~--~~d~~i~g~~~evl~~l~~~l 246 (252)
T d1ma3a_ 180 EAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADP--IFDVKIIGKAGEVLPKIVEEV 246 (252)
T ss_dssp HHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGG--GCSEEEESCHHHHHHHHHHHH
T ss_pred HhhCCCeEEEecCCceeeechHHHHHHHHcCCeEEEECCCCCCCCC--ceeEEEECCHHHHHHHHHHHH
Confidence 35789999999999765443333321 123467889998876543 457899999999999997654
|
| >d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: AF1676, Sir2 homolog (Sir2-AF1?) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.94 E-value=0.4 Score=47.36 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=46.4
Q ss_pred ccCCCCEEEEeCCccccHHHHHHHH--hcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 157 DWIQFDVIIQIGSRITSKRISQMIE--ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 157 ~~~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
.++++|++|++|+++.-........ .....++|.|+.++..++. ..++.|.+++.++|..|.+.+
T Consensus 174 ~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~~i~IN~~~t~~d~--~~d~~i~g~a~e~L~~l~~~l 240 (249)
T d1m2ka_ 174 EVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTP--IADYSLRGKAGEVMDELVRHV 240 (249)
T ss_dssp HHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHH
T ss_pred hcccCCEEEEECCCCeeeehhhHHHHHHHcCCeEEEECCCCCCCCC--cccEEEECCHHHHHHHHHHHH
Confidence 4578999999999986444332222 2234568889998876654 357889999999999987654
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=80.29 E-value=0.59 Score=45.32 Aligned_cols=41 Identities=7% Similarity=0.105 Sum_probs=30.8
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S 978 (983)
.|.||++|+..+....-+.+.+.|++ .|.|+++|+.|.+..
T Consensus 28 ~P~vl~~h~~~G~~~~~~~~a~~lA~~Gy~vl~pd~~~~~~~ 69 (233)
T d1dina_ 28 APVIVIAQEIFGVNAFMRETVSWLVDQGYAAVCPDLYARQAP 69 (233)
T ss_dssp EEEEEEECCTTBSCHHHHHHHHHHHHTTCEEEEECGGGGTST
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHHHhcCCcceeeeeccCCCc
Confidence 68999999666555555666777765 599999999776543
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=80.05 E-value=0.62 Score=46.24 Aligned_cols=41 Identities=10% Similarity=0.052 Sum_probs=32.3
Q ss_pred CceEEEeCCC---CCChhhHHHHHHHhhC-CCEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGF---LGTGEEWIPIMKAVSG-SARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~---~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S 978 (983)
.|.|||+||- .++...|..+...|.+ +|.|+++|.|..+..
T Consensus 62 ~P~vv~iHGG~w~~g~~~~~~~~a~~l~~~G~~Vv~~~YRl~p~~ 106 (261)
T d2pbla1 62 VGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEV 106 (261)
T ss_dssp SEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTS
T ss_pred CCeEEEECCCCCccCChhHhhhHHHHHhcCCceeecccccccccc
Confidence 6899999994 4566777777777754 599999999976654
|