Citrus Sinensis ID: 041265

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31

MRTIRQTCGLENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLKLQQTRLFCKILDNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL

ccccccccccccccccccccccHHHHHHHcccccccccccHHHHHHHHccccccEEEEEcccHHHHHHHHHHHcccccccccHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccHHHccccccccccccccHHHHHHHHHHHHcccccccEEEEEEcccccccccccccHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccEEEEccHHHHHHHcHHHHHHHcccccEEEEEEccccccccccccccHHHHHHHcccccEEEEEccccccc

cccEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHcccccccEEEEEccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHccEEEcccccccHHHHHHHHHHHHHccccccEEEEEEEcccccccccccccccccEEEEccccccccHHHHHHHHccHcccHHHHHHHHHHHHHHHHHHcccccEEEEHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccHHHHHHHHccccEEEEcccccccc

mrtirqtcglenvhdafgvghsstsISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKrlhsnpqfRQLCQEAFSSKdkkqkfggqmheIDAFSREIeagsracffedlglyyigpvdghnLEDLAYVLKQVkaipdpgaVLIHVITEKekamlplkLQQTRLFCKIldnrmgggtglnlfqkhfpircfdvgiAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQvahdvdlqklpVRFAidraglvgadgpthcgafdttfmaclpnmvvmkdIKLVLL

mrtirqtcglenvhdafgvghsstsisaGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEkekamlplkLQQTRLFCKILDNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL

******TCGLENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSN*QFRQLC*******************IDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLKLQQTRLFCKILDNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVL*

MRTIRQTCGLENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQ***************************EIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLKLQQTRLFCKILDNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL

MRTIRQTCGLENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLCQEAFSS********GQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLKLQQTRLFCKILDNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL

*****QTCGLENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLKLQQTRLFCKILDNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDI*****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		309	2.2.26 [Sep-21-2011]
Q6YU51		713	Probable 1-deoxy-D-xylulo	yes	no	0.932	0.403	0.507	5e-95
Q38854		717	1-deoxy-D-xylulose-5-phos	yes	no	0.932	0.401	0.507	3e-93
O78328		719	Probable 1-deoxy-D-xylulo	N/A	no	0.932	0.400	0.497	1e-90
O22567		720	1-deoxy-D-xylulose-5-phos	no	no	0.932	0.4	0.502	1e-88
B3QFY7		641	1-deoxy-D-xylulose-5-phos	yes	no	0.935	0.450	0.435	7e-72
Q6NB76		641	1-deoxy-D-xylulose-5-phos	yes	no	0.935	0.450	0.435	7e-72
B6IRB5		642	1-deoxy-D-xylulose-5-phos	yes	no	0.932	0.448	0.436	1e-71
Q130G7		638	1-deoxy-D-xylulose-5-phos	yes	no	0.935	0.452	0.432	1e-71
A6WWC4		638	1-deoxy-D-xylulose-5-phos	yes	no	0.919	0.445	0.449	1e-71
Q21A74		641	1-deoxy-D-xylulose-5-phos	yes	no	0.935	0.450	0.437	2e-71

>sp\|Q6YU51\|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0190000 PE=2 SV=1	Back alignment and function desciption

 Score =  347 bits (891), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 194/382 (50%), Positives = 233/382 (60%), Gaps = 94/382 (24%)

Query: 1   MRTIRQTCGL-------ENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNN 53
           M TIRQT GL       E+ HDAFG GHSSTSISA L          GMAV RDLLGK N
Sbjct: 155 MHTIRQTSGLAGFPKRDESAHDAFGAGHSSTSISAAL----------GMAVARDLLGKKN 204

Query: 54  HVISVIVEGATIARMSYEAINNAG-------------------------------VLNKA 82
           HVISVI +GA  A  +YEA+NN+G                                L+KA
Sbjct: 205 HVISVIGDGAMTAGQAYEAMNNSGYLDSNMIVVLNDNKQVSLPTATLDGPATPVGALSKA 264

Query: 83  LKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEI----DAFSREIEAGSRACFFEDLGLY 138
           L +L S+ + R+L + A   K   ++ GGQ HE+    D ++R + + S +  FE+LGLY
Sbjct: 265 LTKLQSSTKLRRLREAA---KTVTKQIGGQAHEVAAKVDEYARGMVSASGSTLFEELGLY 321

Query: 139 YIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK--------------- 183
           YIGPVDGH+++DL  +  +VK++P PG VL+H++TEK K   P +               
Sbjct: 322 YIGPVDGHSVDDLVAIFNKVKSMPAPGPVLVHIVTEKGKGYPPAEAAADRMHGVVKFDPT 381

Query: 184 -----------LQQTRLFCKIL------DNR-------MGGGTGLNLFQKHFPIRCFDVG 219
                      L  T+ F + L      D++       MGGGTGLN F K FP RCFDVG
Sbjct: 382 TGRQFKSKCSTLSYTQYFAEALIREAEADDKVVGIHAAMGGGTGLNYFHKRFPERCFDVG 441

Query: 220 IAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGAD 279
           IAEQHAVTFAAGLAAEGLKPFCAIYSSFLQR +DQV HDVDLQ+LPVRFA+DRAGLVGAD
Sbjct: 442 IAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHDVDLQRLPVRFAMDRAGLVGAD 501

Query: 280 GPTHCGAFDTTFMACLPNMVVM 301
           GPTHCGAFD  +MACLPNMVVM
Sbjct: 502 GPTHCGAFDVAYMACLPNMVVM 523

Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP). Is a limiting enzyme for plastidic isoprenoid biosynthesis and essential for chloroplast development.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 2EC: .EC: 1EC: .EC: 7

>sp\|Q38854\|DXS_ARATH 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=DXS PE=1 SV=2	Back alignment and function description

>sp\|O78328\|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1	Back alignment and function description

>sp\|O22567\|DXS1_ORYSJ 1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2	Back alignment and function description

>sp\|B3QFY7\|DXS_RHOPT 1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=dxs PE=3 SV=1	Back alignment and function description

>sp\|Q6NB76\|DXS_RHOPA 1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN=dxs PE=3 SV=1	Back alignment and function description

>sp\|B6IRB5\|DXS_RHOCS 1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dxs PE=3 SV=1	Back alignment and function description

>sp\|Q130G7\|DXS_RHOPS 1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=dxs PE=3 SV=1	Back alignment and function description

>sp\|A6WWC4\|DXS_OCHA4 1-deoxy-D-xylulose-5-phosphate synthase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=dxs PE=3 SV=1	Back alignment and function description

>sp\|Q21A74\|DXS_RHOPB 1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=dxs PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		309
225446170		735	PREDICTED: probable 1-deoxy-D-xylulose-5	0.932	0.391	0.562	1e-105
147803271		1638	hypothetical protein VITISV_003721 [Viti	0.932	0.175	0.562	1e-105
297735368		808	unnamed protein product [Vitis vinifera]	0.932	0.356	0.562	1e-101
225446107		731	PREDICTED: probable 1-deoxy-D-xylulose-5	0.932	0.393	0.562	1e-101
147855372		713	hypothetical protein VITISV_003880 [Viti	0.932	0.403	0.562	1e-101
359485061		815	PREDICTED: probable 1-deoxy-D-xylulose-5	0.932	0.353	0.554	1e-101
449500270		724	PREDICTED: LOW QUALITY PROTEIN: probable	0.932	0.397	0.557	1e-100
224117606		646	predicted protein [Populus trichocarpa]	0.932	0.445	0.554	1e-100
297735323		690	unnamed protein product [Vitis vinifera]	0.932	0.417	0.554	1e-100
449457233		721	PREDICTED: probable 1-deoxy-D-xylulose-5	0.932	0.399	0.557	1e-100

>gi\|225446170\|ref\|XP_002271585.1\| PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Vitis vinifera] gi\|297735326\|emb\|CBI17766.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/382 (56%), Positives = 243/382 (63%), Gaps = 94/382 (24%)

Query: 1   MRTIRQTCGL-------ENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNN 53
           M TIRQTCGL       E+++DAFG GHSSTSISAGL          GMAVGRDLLGKNN
Sbjct: 175 MHTIRQTCGLAGFPKRDESIYDAFGAGHSSTSISAGL----------GMAVGRDLLGKNN 224

Query: 54  HVISVIVEGATIARMSYEAINNAG-------------------------------VLNKA 82
           HVISVI +GA  A  +YEA+NNAG                                L+KA
Sbjct: 225 HVISVIGDGAMTAGQAYEAMNNAGYLDSNLIIILNDNGQVSLPTATVDGPAPPVGALSKA 284

Query: 83  LKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEI----DAFSREIEAGSRACFFEDLGLY 138
           L  L S+ +FRQL + A   K   ++ GGQ HEI    D + R +  GS AC FE+LGLY
Sbjct: 285 LTNLQSSRKFRQLREAA---KGFTKQVGGQAHEIAAKVDEYMRGMVGGSNACLFEELGLY 341

Query: 139 YIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLKL-------------- 184
           YIGPVDGHN+EDL ++LK+V+A+P PG VL+HVITEK K   P ++              
Sbjct: 342 YIGPVDGHNVEDLVHILKKVRAMPAPGPVLVHVITEKGKGYAPAEVAADKMHGVVKFDAM 401

Query: 185 --------QQTRLFCKILDNR-----------------MGGGTGLNLFQKHFPIRCFDVG 219
                    +TR + +                      MGGGTGLNLFQKHFP RCFDVG
Sbjct: 402 SGKQLKTKSKTRSYTQYFAESLIAEAERDENIIAIHAAMGGGTGLNLFQKHFPDRCFDVG 461

Query: 220 IAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGAD 279
           IAEQHAVTFAAGLA EGLKPFCAIYSSFLQR FDQVAHDVDLQKLPVRFA+DRAGLVGAD
Sbjct: 462 IAEQHAVTFAAGLATEGLKPFCAIYSSFLQRGFDQVAHDVDLQKLPVRFAMDRAGLVGAD 521

Query: 280 GPTHCGAFDTTFMACLPNMVVM 301
           GPTHCGAFDTTFMACLPNMVVM
Sbjct: 522 GPTHCGAFDTTFMACLPNMVVM 543

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|147803271\|emb\|CAN71054.1\| hypothetical protein VITISV_003721 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297735368\|emb\|CBI17808.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225446107\|ref\|XP_002270336.1\| PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147855372\|emb\|CAN83878.1\| hypothetical protein VITISV_003880 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359485061\|ref\|XP_002271782.2\| PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449500270\|ref\|XP_004161053.1\| PREDICTED: LOW QUALITY PROTEIN: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224117606\|ref\|XP_002331678.1\| predicted protein [Populus trichocarpa] gi\|222874097\|gb\|EEF11228.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297735323\|emb\|CBI17763.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449457233\|ref\|XP_004146353.1\| PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		309
TAIR\|locus:2130374		717	CLA1 "CLOROPLASTOS ALTERADOS 1	0.336	0.145	0.894	4.8e-92
TAIR\|locus:2148047		700	DXPS3 "1-deoxy-D-xylulose 5-ph	0.307	0.135	0.663	1.5e-58
TIGR_CMR\|CHY_1985		622	CHY_1985 "1-deoxy-D-xylulose-5	0.388	0.192	0.583	7.2e-49
TAIR\|locus:2089885		641	DXPS1 "1-deoxy-D-xylulose 5-ph	0.336	0.162	0.865	4.2e-47
TIGR_CMR\|GSU_0686		637	GSU_0686 "deoxyxylulose-5-phos	0.336	0.163	0.673	1.5e-45
TIGR_CMR\|GSU_1764		626	GSU_1764 "deoxyxylulose-5-phos	0.336	0.166	0.673	8.9e-45
TIGR_CMR\|DET_0745		647	DET_0745 "1-deoxy-D-xylulose-5	0.333	0.159	0.621	4.6e-44
TIGR_CMR\|BA_4400		630	BA_4400 "1-deoxyxylulose-5-pho	0.388	0.190	0.575	8.9e-44
UNIPROTKB\|P77488		620	dxs "Dxs" [Escherichia coli K-	0.336	0.167	0.663	1.4e-43
TIGR_CMR\|SO_1525		622	SO_1525 "deoxyxylulose-5-phosp	0.336	0.167	0.644	1.6e-43

TAIR\|locus:2130374 CLA1 "CLOROPLASTOS ALTERADOS 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 511 (184.9 bits), Expect = 4.8e-92, Sum P(3) = 4.8e-92
 Identities = 93/104 (89%), Positives = 98/104 (94%)

Query:   198 MGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAH 257
             MGGGTGLNLFQ+ FP RCFDVGIAEQHAVTFAAGLA EGLKPFCAIYSSF+QR +DQV H
Sbjct:   426 MGGGTGLNLFQRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVH 485

Query:   258 DVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVM 301
             DVDLQKLPVRFA+DRAGLVGADGPTHCGAFD TFMACLPNM+VM
Sbjct:   486 DVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMIVM 529

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008661 "1-deoxy-D-xylulose-5-phosphate synthase activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016114 "terpenoid biosynthetic process" evidence=IEA

GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;IMP

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA;TAS

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR\|locus:2148047 DXPS3 "1-deoxy-D-xylulose 5-phosphate synthase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_1985 CHY_1985 "1-deoxy-D-xylulose-5-phosphate synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TAIR\|locus:2089885 DXPS1 "1-deoxy-D-xylulose 5-phosphate synthase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_0686 GSU_0686 "deoxyxylulose-5-phosphate synthase" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_1764 GSU_1764 "deoxyxylulose-5-phosphate synthase" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|DET_0745 DET_0745 "1-deoxy-D-xylulose-5-phosphate synthase" [Dehalococcoides ethenogenes 195 (taxid:243164)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_4400 BA_4400 "1-deoxyxylulose-5-phosphate synthase" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

UNIPROTKB\|P77488 dxs "Dxs" [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_1525 SO_1525 "deoxyxylulose-5-phosphate synthase" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.2.1	0.691
4th Layer	2.2.1.7	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00031458001	SubName- Full=Chromosome chr11 scaffold_56, whole genome shotgun sequence; (690 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00016085001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (471 aa)		•	•	•	0.983
	GSVIVG00002540001	RecName- Full=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; EC=4.6.1.12; (183 aa)		•		•	0.727
	GSVIVG00035363001	SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (238 aa)		•		•	0.702
	GSVIVG00017298001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (339 aa)		•		•	0.618
	GSVIVG00011801001	SubName- Full=Chromosome undetermined scaffold_339, whole genome shotgun sequence; (252 aa)	•				0.504
	GSVIVG00024531001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (740 aa)		•		•	0.489
	GSVIVG00035470001	SubName- Full=Chromosome chr12 scaffold_78, whole genome shotgun sequence; (497 aa)				•	0.446

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		309
PLN02582		677	PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate	1e-126
PRK05444		580	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate	1e-115
COG1154		627	COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [	1e-114
PLN02234		641	PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate	1e-102
PRK12571		641	PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate	7e-99
TIGR00204		617	TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate syn	1e-86
PLN02225		701	PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate	6e-74
cd07033		156	cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) bin	7e-50
PRK12315		581	PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate	2e-49
pfam13292		272	pfam13292, DXP_synthase_N, 1-deoxy-D-xylulose-5-ph	4e-49
cd02007		195	cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) fam	5e-43
smart00861		136	smart00861, Transket_pyr, Transketolase, pyrimidin	4e-35
pfam02779		172	pfam02779, Transket_pyr, Transketolase, pyrimidine	1e-34
COG3958		312	COG3958, COG3958, Transketolase, C-terminal subuni	4e-24
cd06586		154	cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding	1e-14
PRK05899		586	PRK05899, PRK05899, transketolase; Reviewed	2e-08
cd07036		167	cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PY	6e-06
PTZ00182		355	PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydro	9e-06
COG0022		324	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogena	0.001
COG0021		663	COG0021, TktA, Transketolase [Carbohydrate transpo	0.002

>gnl\|CDD\|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

 Score =  376 bits (966), Expect = e-126
 Identities = 196/382 (51%), Positives = 232/382 (60%), Gaps = 94/382 (24%)

Query: 1   MRTIRQTCGL-------ENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNN 53
           M T+RQT GL       E+ +D FG GHSST+ISAGL          GMAVGRDL GK N
Sbjct: 118 MHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTISAGL----------GMAVGRDLKGKKN 167

Query: 54  HVISVIVEGATIARMSYEAINNAGVL----------NK---------------------A 82
           +V++VI +GA  A  +YEA+NNAG L          NK                     A
Sbjct: 168 NVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSA 227

Query: 83  LKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHE----IDAFSREIEAGSRACFFEDLGLY 138
           L RL S+   R+L + A   K   ++ GG MHE    +D ++R + +GS +  FE+LGLY
Sbjct: 228 LSRLQSSRPLRELREVA---KGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLY 284

Query: 139 YIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK-------EKAM------------ 179
           YIGPVDGHN++DL  +L++VK+    G VLIHV+TEK       E+A             
Sbjct: 285 YIGPVDGHNIDDLVTILREVKSTKTTGPVLIHVVTEKGRGYPYAERAADKYHGVVKFDPA 344

Query: 180 ------LPLKLQQ-TRLFCKIL------DNR-------MGGGTGLNLFQKHFPIRCFDVG 219
                 +  K Q  T  F + L      D         MGGGTGLNLF + FP RCFDVG
Sbjct: 345 TGKQFKVKAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFARRFPTRCFDVG 404

Query: 220 IAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGAD 279
           IAEQHAVTFAAGLA EGLKPFCAIYSSFLQR +DQV HDVDLQKLPVRFA+DRAGLVGAD
Sbjct: 405 IAEQHAVTFAAGLACEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGAD 464

Query: 280 GPTHCGAFDTTFMACLPNMVVM 301
           GPTHCGAFD T+MACLPNMVVM
Sbjct: 465 GPTHCGAFDVTYMACLPNMVVM 486

Length = 677

>gnl\|CDD\|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

>gnl\|CDD\|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

>gnl\|CDD\|177870 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

>gnl\|CDD\|132916 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins	Back alignment and domain information

>gnl\|CDD\|237053 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|222031 pfam13292, DXP_synthase_N, 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

>gnl\|CDD\|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis	Back alignment and domain information

>gnl\|CDD\|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain	Back alignment and domain information

>gnl\|CDD\|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain	Back alignment and domain information

>gnl\|CDD\|226467 COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes	Back alignment and domain information

>gnl\|CDD\|235639 PRK05899, PRK05899, transketolase; Reviewed	Back alignment and domain information

>gnl\|CDD\|132919 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins	Back alignment and domain information

>gnl\|CDD\|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase; Provisional	Back alignment and domain information

>gnl\|CDD\|223101 COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|223100 COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		309
COG1154		627	Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m	100.0
PLN02234		641	1-deoxy-D-xylulose-5-phosphate synthase	100.0
PLN02582		677	1-deoxy-D-xylulose-5-phosphate synthase	100.0
PLN02225		701	1-deoxy-D-xylulose-5-phosphate synthase	100.0
TIGR00204		617	dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s	100.0
PRK12315		581	1-deoxy-D-xylulose-5-phosphate synthase; Provision	100.0
PRK12571		641	1-deoxy-D-xylulose-5-phosphate synthase; Provision	100.0
PRK05444		580	1-deoxy-D-xylulose-5-phosphate synthase; Provision	100.0
PRK12753		663	transketolase; Reviewed	100.0
PTZ00089		661	transketolase; Provisional	100.0
PRK12754		663	transketolase; Reviewed	100.0
KOG0523		632	consensus Transketolase [Carbohydrate transport an	100.0
TIGR00232		653	tktlase_bact transketolase, bacterial and yeast. T	100.0
PLN02790		654	transketolase	100.0
PRK05899		624	transketolase; Reviewed	100.0
COG0021		663	TktA Transketolase [Carbohydrate transport and met	100.0
TIGR03186		889	AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S	100.0
PRK09405		891	aceE pyruvate dehydrogenase subunit E1; Reviewed	100.0
PRK13012		896	2-oxoacid dehydrogenase subunit E1; Provisional	100.0
TIGR00759		885	aceE pyruvate dehydrogenase E1 component, homodime	100.0
COG3959		243	Transketolase, N-terminal subunit [Carbohydrate tr	100.0
COG3958		312	Transketolase, C-terminal subunit [Carbohydrate tr	100.0
PRK09404		924	sucA 2-oxoglutarate dehydrogenase E1 component; Re	100.0
TIGR00239		929	2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon	100.0
PF13292		270	DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn	100.0
PF00456		332	Transketolase_N: Transketolase, thiamine diphospha	99.97
cd02007		195	TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s	99.97
cd07033		156	TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai	99.97
cd02017		386	TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam	99.97
PRK05261		785	putative phosphoketolase; Provisional	99.97
cd07036		167	TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding	99.96
cd02012		255	TPP_TK Thiamine pyrophosphate (TPP) family, Transk	99.95
PLN02683		356	pyruvate dehydrogenase E1 component subunit beta	99.95
PRK09212		327	pyruvate dehydrogenase subunit beta; Validated	99.95
CHL00144		327	odpB pyruvate dehydrogenase E1 component beta subu	99.95
PRK11892		464	pyruvate dehydrogenase subunit beta; Provisional	99.94
PTZ00182		355	3-methyl-2-oxobutanate dehydrogenase; Provisional	99.94
PF02779		178	Transket_pyr: Transketolase, pyrimidine binding do	99.93
COG2609		887	AceE Pyruvate dehydrogenase complex, dehydrogenase	99.93
smart00861		168	Transket_pyr Transketolase, pyrimidine binding dom	99.92
COG1071		358	AcoA Pyruvate/2-oxoglutarate dehydrogenase complex	99.92
COG0022		324	AcoB Pyruvate/2-oxoglutarate dehydrogenase complex	99.91
PF00676		300	E1_dh: Dehydrogenase E1 component; InterPro: IPR00	99.9
PLN02269		362	Pyruvate dehydrogenase E1 component subunit alpha	99.89
PLN02374		433	pyruvate dehydrogenase (acetyl-transferring)	99.87
CHL00149		341	odpA pyruvate dehydrogenase E1 component alpha sub	99.86
cd02016		265	TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami	99.85
KOG0225		394	consensus Pyruvate dehydrogenase E1, alpha subunit	99.85
cd02000		293	TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP)	99.85
TIGR03182		315	PDH_E1_alph_y pyruvate dehydrogenase E1 component,	99.85
TIGR03181		341	PDH_E1_alph_x pyruvate dehydrogenase E1 component,	99.82
cd02011		227	TPP_PK Thiamine pyrophosphate (TPP) family, Phosph	99.79
KOG1182		432	consensus Branched chain alpha-keto acid dehydroge	99.78
KOG0524		359	consensus Pyruvate dehydrogenase E1, beta subunit	99.74
KOG0525		362	consensus Branched chain alpha-keto acid dehydroge	99.53
cd00568		168	TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa	99.53
cd02004		172	TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam	99.43
cd02008		178	TPP_IOR_alpha Thiamine pyrophosphate (TPP) family,	99.42
cd02002		178	TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC	99.4
PRK12270		1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	99.38
cd02014		178	TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv	99.33
cd03371		188	TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp	99.33
cd03372		179	TPP_ComE Thiamine pyrophosphate (TPP) family, ComE	99.32
cd02015		186	TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet	99.3
cd02003		205	TPP_IolD Thiamine pyrophosphate (TPP) family, IolD	99.29
cd02013		196	TPP_Xsc_like Thiamine pyrophosphate (TPP) family,	99.25
PRK11864		300	2-ketoisovalerate ferredoxin oxidoreductase subuni	99.23
cd02001		157	TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil	99.17
cd02005		183	TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family,	99.16
PF02775		153	TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter	99.15
TIGR03846		181	sulfopy_beta sulfopyruvate decarboxylase, beta sub	99.15
cd02010		177	TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto	99.13
cd02009		175	TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa	99.1
PRK07092		530	benzoylformate decarboxylase; Reviewed	99.09
PRK08266		542	hypothetical protein; Provisional	99.07
COG3957		793	Phosphoketolase [Carbohydrate transport and metabo	99.07
cd02006		202	TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s	99.06
PRK07524		535	hypothetical protein; Provisional	99.06
PRK08199		557	thiamine pyrophosphate protein; Validated	99.06
PRK06163		202	hypothetical protein; Provisional	99.06
TIGR03297		361	Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi	99.05
PRK06546		578	pyruvate dehydrogenase; Provisional	98.99
cd03376		235	TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam	98.96
PRK06112		578	acetolactate synthase catalytic subunit; Validated	98.95
cd06586		154	TPP_enzyme_PYR Pyrimidine (PYR) binding domain of	98.94
cd03375		193	TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o	98.93
PRK08327		569	acetolactate synthase catalytic subunit; Validated	98.89
PRK06725		570	acetolactate synthase 3 catalytic subunit; Validat	98.89
PRK08322		547	acetolactate synthase; Reviewed	98.87
PRK07710		571	acetolactate synthase catalytic subunit; Reviewed	98.85
PRK08611		576	pyruvate oxidase; Provisional	98.84
PRK08155		564	acetolactate synthase catalytic subunit; Validated	98.83
PRK06457		549	pyruvate dehydrogenase; Provisional	98.83
TIGR02720		575	pyruv_oxi_spxB pyruvate oxidase. Members of this f	98.83
PRK09124		574	pyruvate dehydrogenase; Provisional	98.83
PRK07064		544	hypothetical protein; Provisional	98.82
PRK12474		518	hypothetical protein; Provisional	98.82
TIGR02418		539	acolac_catab acetolactate synthase, catabolic. Ace	98.81
COG0028		550	IlvB Thiamine pyrophosphate-requiring enzymes [ace	98.81
PRK08527		563	acetolactate synthase 3 catalytic subunit; Validat	98.8
PRK07418		616	acetolactate synthase 3 catalytic subunit; Reviewe	98.8
TIGR01504		588	glyox_carbo_lig glyoxylate carboligase. Glyoxylate	98.79
PRK07586		514	hypothetical protein; Validated	98.78
PRK06882		574	acetolactate synthase 3 catalytic subunit; Validat	98.77
PRK09107		595	acetolactate synthase 3 catalytic subunit; Validat	98.77
PRK08617		552	acetolactate synthase; Reviewed	98.76
CHL00099		585	ilvB acetohydroxyacid synthase large subunit	98.76
PRK05858		542	hypothetical protein; Provisional	98.76
PRK08978		548	acetolactate synthase 2 catalytic subunit; Reviewe	98.76
TIGR00118		558	acolac_lg acetolactate synthase, large subunit, bi	98.75
PLN02470		585	acetolactate synthase	98.75
PRK08273		597	thiamine pyrophosphate protein; Provisional	98.74
PRK06154		565	hypothetical protein; Provisional	98.74
PRK06965		587	acetolactate synthase 3 catalytic subunit; Validat	98.74
PRK06048		561	acetolactate synthase 3 catalytic subunit; Reviewe	98.73
PRK07449		568	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1	98.72
PRK06456		572	acetolactate synthase catalytic subunit; Reviewed	98.71
PRK05778		301	2-oxoglutarate ferredoxin oxidoreductase subunit b	98.7
PRK08979		572	acetolactate synthase 3 catalytic subunit; Validat	98.7
TIGR03457		579	sulphoacet_xsc sulfoacetaldehyde acetyltransferase	98.7
PRK11867		286	2-oxoglutarate ferredoxin oxidoreductase subunit b	98.69
TIGR03393		539	indolpyr_decarb indolepyruvate decarboxylase, Erwi	98.69
PRK06276		586	acetolactate synthase catalytic subunit; Reviewed	98.68
PRK06466		574	acetolactate synthase 3 catalytic subunit; Validat	98.67
PRK11866		279	2-oxoacid ferredoxin oxidoreductase subunit beta;	98.67
PRK11869		280	2-oxoacid ferredoxin oxidoreductase subunit beta;	98.67
PRK11269		591	glyoxylate carboligase; Provisional	98.66
PRK11865		299	pyruvate ferredoxin oxidoreductase subunit beta; P	98.65
cd02018		237	TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru	98.65
PRK07979		574	acetolactate synthase 3 catalytic subunit; Validat	98.64
PRK07789		612	acetolactate synthase 1 catalytic subunit; Validat	98.63
PLN02573		578	pyruvate decarboxylase	98.62
PRK07525		588	sulfoacetaldehyde acetyltransferase; Validated	98.62
PRK07282		566	acetolactate synthase catalytic subunit; Reviewed	98.61
PRK09628		277	oorB 2-oxoglutarate-acceptor oxidoreductase subuni	98.59
PRK09259		569	putative oxalyl-CoA decarboxylase; Validated	98.58
TIGR02177		287	PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta	98.56
TIGR03254		554	oxalate_oxc oxalyl-CoA decarboxylase. In a number	98.53
TIGR03394		535	indol_phenyl_DC indolepyruvate/phenylpyruvate deca	98.53
TIGR03336		595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	98.36
PF09364		379	XFP_N: XFP N-terminal domain; InterPro: IPR018970	98.29
PLN02980		1655	2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi	98.21
COG3961		557	Pyruvate decarboxylase and related thiamine pyroph	97.9
COG3962		617	Acetolactate synthase [Amino acid transport and me	97.71
COG0567		906	SucA 2-oxoglutarate dehydrogenase complex, dehydro	97.55
KOG0451		913	consensus Predicted 2-oxoglutarate dehydrogenase,	97.5
KOG1184		561	consensus Thiamine pyrophosphate-requiring enzyme	97.48
KOG0450		1017	consensus 2-oxoglutarate dehydrogenase, E1 subunit	97.43
COG4231		640	Indolepyruvate ferredoxin oxidoreductase, alpha an	97.39
KOG1185		571	consensus Thiamine pyrophosphate-requiring enzyme	97.27
COG1013		294	PorB Pyruvate:ferredoxin oxidoreductase and relate	96.93
KOG4166		675	consensus Thiamine pyrophosphate-requiring enzyme	96.04
PRK07119		352	2-ketoisovalerate ferredoxin reductase; Validated	95.76
PRK08659		376	2-oxoglutarate ferredoxin oxidoreductase subunit a	95.41
PF01855		230	POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta	95.4
PRK08366		390	vorA 2-ketoisovalerate ferredoxin oxidoreductase s	94.58
cd03377		365	TPP_PFOR_PNO Thiamine pyrophosphate (TPP family),	94.17
PRK09627		375	oorA 2-oxoglutarate-acceptor oxidoreductase subuni	94.16
PF03894		179	XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate	93.52
TIGR03710		562	OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s	93.19
COG3960		592	Glyoxylate carboligase [General function predictio	92.55
PRK09622		407	porA pyruvate flavodoxin oxidoreductase subunit al	92.4
PRK13030		1159	2-oxoacid ferredoxin oxidoreductase; Provisional	91.83
cd07034		160	TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi	91.45
PRK09193		1165	indolepyruvate ferredoxin oxidoreductase; Validate	90.81
COG1165		566	MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car	90.51
TIGR03336		595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	89.66
PRK08367		394	porA pyruvate ferredoxin oxidoreductase subunit al	89.32
COG0674		365	PorA Pyruvate:ferredoxin oxidoreductase and relate	88.94
TIGR03297		361	Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi	88.82
TIGR02176		1165	pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid	88.78
COG4032		172	Predicted thiamine-pyrophosphate-binding protein [	83.59
cd07035		155	TPP_PYR_POX_like Pyrimidine (PYR) binding domain o	82.85
PRK13029		1186	2-oxoacid ferredoxin oxidoreductase; Provisional	82.5
KOG0523		632	consensus Transketolase [Carbohydrate transport an	80.76
cd01460		266	vWA_midasin VWA_Midasin: Midasin is a member of th	80.32
cd06586		154	TPP_enzyme_PYR Pyrimidine (PYR) binding domain of	80.13

>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]	Back alignment and domain information

Probab=100.00  E-value=7.1e-72  Score=544.97  Aligned_cols=295  Identities=52%  Similarity=0.789  Sum_probs=255.6

Q ss_pred             CCCcccCCCC-------CCCCCCCCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHH
Q 041265            1 MRTIRQTCGL-------ENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAI   73 (309)
Q Consensus         1 ~~~~r~~~g~-------e~~~d~~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAl   73 (309)
                      |.|+||++||       ||+||.|.+||+|++||+|+          |||.|+.+++++.+||+++|||+|+.|++||||
T Consensus        89 f~tlRq~~GlsGf~~r~ESe~D~f~~GHsSTSiSaal----------G~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EAL  158 (627)
T COG1154          89 FDTLRQKDGLSGFPKREESEHDWFGVGHSSTSISAAL----------GMAKARDLKGEDRNVVAVIGDGALTGGMAFEAL  158 (627)
T ss_pred             cchhhhcCCCCCCCCcccCCCcccccCchHHHHHHHh----------hHHHHHHhcCCCCcEEEEECCccccchHHHHHH
Confidence            6799999999       99999999999999999999          999999999999999999999999999999999


Q ss_pred             HHHh-hccCcEEEEEeCcchhhhhhhhhcccch-------------------hhccCCcccc----hhhhHHhhhcCccc
Q 041265           74 NNAG-VLNKALKRLHSNPQFRQLCQEAFSSKDK-------------------KQKFGGQMHE----IDAFSREIEAGSRA  129 (309)
Q Consensus        74 n~A~-~~~~~Li~i~~nn~~~~~~~~~~~~~~~-------------------~~~~~~~~~~----~~~~~~~~~~~~~~  129 (309)
                      |+|+ ..+.|+++|.++|+.+++.+.-..++-.                   .+..+.++.+    .++.+|+++.+  .
T Consensus       159 N~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~--~  236 (627)
T COG1154         159 NNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVP--G  236 (627)
T ss_pred             hhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCc--h
Confidence            9999 4446777665555565544331111100                   0001111111    12222233333  3


Q ss_pred             hhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh--------------------------
Q 041265          130 CFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK--------------------------  183 (309)
Q Consensus       130 ~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e--------------------------  183 (309)
                      .+||.+||+|+|++||||+++|..+|+.+|+.  ++|++||+.|.|||||+++|                          
T Consensus       237 ~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd~--~gPvllHv~T~KGKGY~pAE~d~~~~H~v~~f~~~~tg~~~~~~~~  314 (627)
T COG1154         237 TLFEELGFNYIGPIDGHNLEELIPTLKNAKDL--KGPVLLHVVTKKGKGYKPAEEDPIKYHGVGPFDPIETGQSKKSKPS  314 (627)
T ss_pred             hhHHHhCCeeECCcCCCCHHHHHHHHHHHhcC--CCCEEEEEEecCCCCCChhhcChhhccCCCCCCccccCccCCCCCC
Confidence            69999999999999999999999999999998  99999999999999999998                          


Q ss_pred             -hhHHHHHhhhc-------------ccccCCCCCchhhhhhCCCceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHH
Q 041265          184 -LQQTRLFCKIL-------------DNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQ  249 (309)
Q Consensus       184 -~~~~~~~~~~l-------------d~dl~~~~~~~~~~~~~p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~  249 (309)
                       ++|+++|+++|             +|.|...+|+..|.++||+||||+|||||+.|++|+|||..|+|||+.+|++|+|
T Consensus       315 ~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL~~F~~~fP~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaIYSTFLQ  394 (627)
T COG1154         315 APSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGLVKFSKKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAIYSTFLQ  394 (627)
T ss_pred             CCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCChHHHHHhCchhheehhhhHHHHHHHHHHHHhCCCCCEEEEecHHHH
Confidence             46999999998             3889999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265          250 RCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL  309 (309)
Q Consensus       250 ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~  309 (309)
                      |||||+.+|+|.+++||++...++|++|+||+|||+.+|+++|++||||+|++|+|..||
T Consensus       395 RAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el  454 (627)
T COG1154         395 RAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEEL  454 (627)
T ss_pred             HHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999998875

>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	Back alignment and domain information

>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	Back alignment and domain information

>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	Back alignment and domain information

>PRK12753 transketolase; Reviewed	Back alignment and domain information

>PTZ00089 transketolase; Provisional	Back alignment and domain information

>PRK12754 transketolase; Reviewed	Back alignment and domain information

>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00232 tktlase_bact transketolase, bacterial and yeast	Back alignment and domain information

>PLN02790 transketolase	Back alignment and domain information

>PRK05899 transketolase; Reviewed	Back alignment and domain information

>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase	Back alignment and domain information

>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed	Back alignment and domain information

>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional	Back alignment and domain information

>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type	Back alignment and domain information

>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed	Back alignment and domain information

>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component	Back alignment and domain information

>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B	Back alignment and domain information

>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2	Back alignment and domain information

>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis	Back alignment and domain information

>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins	Back alignment and domain information

>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E	Back alignment and domain information

>PRK05261 putative phosphoketolase; Provisional	Back alignment and domain information

>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins	Back alignment and domain information

>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates	Back alignment and domain information

>PLN02683 pyruvate dehydrogenase E1 component subunit beta	Back alignment and domain information

>PRK09212 pyruvate dehydrogenase subunit beta; Validated	Back alignment and domain information

>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated	Back alignment and domain information

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional	Back alignment and domain information

>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional	Back alignment and domain information

>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2	Back alignment and domain information

>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]	Back alignment and domain information

>smart00861 Transket_pyr Transketolase, pyrimidine binding domain	Back alignment and domain information

>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]	Back alignment and domain information

>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	Back alignment and domain information

>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex	Back alignment and domain information

>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha	Back alignment and domain information

>PLN02374 pyruvate dehydrogenase (acetyl-transferring)	Back alignment and domain information

>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed	Back alignment and domain information

>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC)	Back alignment and domain information

>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]	Back alignment and domain information

>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)	Back alignment and domain information

>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit	Back alignment and domain information

>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit	Back alignment and domain information

>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O	Back alignment and domain information

>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]	Back alignment and domain information

>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]	Back alignment and domain information

>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]	Back alignment and domain information

>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor	Back alignment and domain information

>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL)	Back alignment and domain information

>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit	Back alignment and domain information

>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC)	Back alignment and domain information

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed	Back alignment and domain information

>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions	Back alignment and domain information

>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins	Back alignment and domain information

>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE)	Back alignment and domain information

>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS	Back alignment and domain information

>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv	Back alignment and domain information

>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc)	Back alignment and domain information

>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional	Back alignment and domain information

>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase)	Back alignment and domain information

>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC)	Back alignment and domain information

>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor	Back alignment and domain information

>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit	Back alignment and domain information

>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation	Back alignment and domain information

>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD)	Back alignment and domain information

>PRK07092 benzoylformate decarboxylase; Reviewed	Back alignment and domain information

>PRK08266 hypothetical protein; Provisional	Back alignment and domain information

>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl)	Back alignment and domain information

>PRK07524 hypothetical protein; Provisional	Back alignment and domain information

>PRK08199 thiamine pyrophosphate protein; Validated	Back alignment and domain information

>PRK06163 hypothetical protein; Provisional	Back alignment and domain information

>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase	Back alignment and domain information

>PRK06546 pyruvate dehydrogenase; Provisional	Back alignment and domain information

>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	Back alignment and domain information

>PRK06112 acetolactate synthase catalytic subunit; Validated	Back alignment and domain information

>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes	Back alignment and domain information

>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	Back alignment and domain information

>PRK08327 acetolactate synthase catalytic subunit; Validated	Back alignment and domain information

>PRK06725 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK08322 acetolactate synthase; Reviewed	Back alignment and domain information

>PRK07710 acetolactate synthase catalytic subunit; Reviewed	Back alignment and domain information

>PRK08611 pyruvate oxidase; Provisional	Back alignment and domain information

>PRK08155 acetolactate synthase catalytic subunit; Validated	Back alignment and domain information

>PRK06457 pyruvate dehydrogenase; Provisional	Back alignment and domain information

>TIGR02720 pyruv_oxi_spxB pyruvate oxidase	Back alignment and domain information

>PRK09124 pyruvate dehydrogenase; Provisional	Back alignment and domain information

>PRK07064 hypothetical protein; Provisional	Back alignment and domain information

>PRK12474 hypothetical protein; Provisional	Back alignment and domain information

>TIGR02418 acolac_catab acetolactate synthase, catabolic	Back alignment and domain information

>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>PRK08527 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed	Back alignment and domain information

>TIGR01504 glyox_carbo_lig glyoxylate carboligase	Back alignment and domain information

>PRK07586 hypothetical protein; Validated	Back alignment and domain information

>PRK06882 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK09107 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK08617 acetolactate synthase; Reviewed	Back alignment and domain information

>CHL00099 ilvB acetohydroxyacid synthase large subunit	Back alignment and domain information

>PRK05858 hypothetical protein; Provisional	Back alignment and domain information

>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed	Back alignment and domain information

>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type	Back alignment and domain information

>PLN02470 acetolactate synthase	Back alignment and domain information

>PRK08273 thiamine pyrophosphate protein; Provisional	Back alignment and domain information

>PRK06154 hypothetical protein; Provisional	Back alignment and domain information

>PRK06965 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed	Back alignment and domain information

>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated	Back alignment and domain information

>PRK06456 acetolactate synthase catalytic subunit; Reviewed	Back alignment and domain information

>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated	Back alignment and domain information

>PRK08979 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase	Back alignment and domain information

>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed	Back alignment and domain information

>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family	Back alignment and domain information

>PRK06276 acetolactate synthase catalytic subunit; Reviewed	Back alignment and domain information

>PRK06466 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional	Back alignment and domain information

>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional	Back alignment and domain information

>PRK11269 glyoxylate carboligase; Provisional	Back alignment and domain information

>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional	Back alignment and domain information

>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways	Back alignment and domain information

>PRK07979 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK07789 acetolactate synthase 1 catalytic subunit; Validated	Back alignment and domain information

>PLN02573 pyruvate decarboxylase	Back alignment and domain information

>PRK07525 sulfoacetaldehyde acetyltransferase; Validated	Back alignment and domain information

>PRK07282 acetolactate synthase catalytic subunit; Reviewed	Back alignment and domain information

>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed	Back alignment and domain information

>PRK09259 putative oxalyl-CoA decarboxylase; Validated	Back alignment and domain information

>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family	Back alignment and domain information

>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase	Back alignment and domain information

>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family	Back alignment and domain information

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit	Back alignment and domain information

>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria	Back alignment and domain information

>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding	Back alignment and domain information

>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]	Back alignment and domain information

>COG3962 Acetolactate synthase [Amino acid transport and metabolism]	Back alignment and domain information

>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]	Back alignment and domain information

>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]	Back alignment and domain information

>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]	Back alignment and domain information

>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]	Back alignment and domain information

>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]	Back alignment and domain information

>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]	Back alignment and domain information

>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated	Back alignment and domain information

>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated	Back alignment and domain information

>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains	Back alignment and domain information

>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed	Back alignment and domain information

>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes	Back alignment and domain information

>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed	Back alignment and domain information

>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria	Back alignment and domain information

>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit	Back alignment and domain information

>COG3960 Glyoxylate carboligase [General function prediction only]	Back alignment and domain information

>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed	Back alignment and domain information

>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional	Back alignment and domain information

>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins	Back alignment and domain information

>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated	Back alignment and domain information

>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]	Back alignment and domain information

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit	Back alignment and domain information

>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed	Back alignment and domain information

>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]	Back alignment and domain information

>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase	Back alignment and domain information

>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	Back alignment and domain information

>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]	Back alignment and domain information

>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins	Back alignment and domain information

>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional	Back alignment and domain information

>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family	Back alignment and domain information

>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		309
2o1s_A		621	1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From		1e-49
2o1x_A		629	1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From		4e-41
3mos_A		616	The Structure Of Human Transketolase Length = 616		2e-06
3ooy_A		616	Crystal Structure Of Human Transketolase (Tkt) Leng		3e-06

>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli Length = 621

Back alignment and structure

Iteration: 1

Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 137/370 (37%), Positives = 179/370 (48%), Gaps = 90/370 (24%) Query: 3 TIRQTCGL-------ENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHV 55 TIRQ GL E+ +D VGHSSTSISAG +G+AV + GKN Sbjct: 97 TIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAG----------IGIAVAAEKEGKNRRT 146 Query: 56 ISVIVEGATIARMSYEAIN----------------------NAGVLNKALKRLHSNPQFR 93 + VI +GA A ++EA N N G LN L +L S + Sbjct: 147 VCVIGDGAITAGXAFEAXNHAGDIRPDXLVILNDNEXSISENVGALNNHLAQLLSGKLYS 206 Query: 94 QLCQEAFSSKDKKQKFGG--QMHEIDAFSREIEAGS--RACFFEDLGLYYIGPVDGHNLE 149 L + K+ F G + E+ + E G FE+LG YIGPVDGH++ Sbjct: 207 SLREGG------KKVFSGVPPIKELLKRTEEHIKGXVVPGTLFEELGFNYIGPVDGHDVL 260 Query: 150 DLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLKLQQ----------------------- 186 L LK + + P +H+ T+K + P + Sbjct: 261 GLITTLKNXRDLKGP--QFLHIXTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGL 318 Query: 187 ---TRLFCKIL------DNRMGG-------GTGLNLFQKHFPIRCFDVGIAEQHAVTFAA 230 +++F L DN++ G+G F + FP R FDV IAEQHAVTFAA Sbjct: 319 PSYSKIFGDWLCETAAKDNKLXAITPAXREGSGXVEFSRKFPDRYFDVAIAEQHAVTFAA 378 Query: 231 GLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTT 290 GLA G KP AIYS+FLQR +DQV HDV +QKLPV FAIDRAG+VGADG TH GAFD + Sbjct: 379 GLAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLS 438 Query: 291 FMACLPNMVV 300 ++ C+P V+ Sbjct: 439 YLRCIPEXVI 448

PyMOL of 2o1s

>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From Deinococcus Radiodurans Length = 629

Back alignment and structure

>pdb|3MOS|A Chain A, The Structure Of Human Transketolase Length = 616

Back alignment and structure

>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt) Length = 616

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		309
2o1x_A		629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	1e-140
2o1s_A		621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	1e-138
3mos_A		616	Transketolase, TK; thiamin diphosphate TPP THDP en	3e-09
1ik6_A		369	Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o	5e-05
1qs0_B		338	2-oxoisovalerate dehydrogenase beta-subunit; heter	6e-05
1w85_B		324	Pyruvate dehydrogenase E1 component, beta subunit;	8e-05
1umd_B		324	E1-beta, 2-OXO acid dehydrogenase beta subunit; al	9e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
2bfd_B		342	2-oxoisovalerate dehydrogenase beta subunit; oxido	1e-04

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Length = 629	Back alignment and structure

 Score =  408 bits (1052), Expect = e-140
 Identities = 114/371 (30%), Positives = 173/371 (46%), Gaps = 85/371 (22%)

Query: 1   MRTIRQTCGL-------ENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNN 53
           M  I++  G+       E+ HDA  VGH+STS++  L          GMA+ RD  GK+ 
Sbjct: 97  MADIKKEGGISGFTKVSESEHDAITVGHASTSLTNAL----------GMALARDAQGKDF 146

Query: 54  HVISVIVEGATIARMSYEAINNAG--------VLN--------------KALKRLHSNPQ 91
           HV +VI +G+    M+  A+N  G        VLN              K ++ L     
Sbjct: 147 HVAAVIGDGSLTGGMALAALNTIGDMGRKMLIVLNDNEMSISENVGAMNKFMRGLQVQKW 206

Query: 92  FRQLCQEAFSSKDKKQKFGGQMHE----IDAFSREIEAGSRACFFEDLGLYYIGPVDGHN 147
           F++        K   +     + +        +R     +    F  +G+ Y+GPVDGHN
Sbjct: 207 FQEGEGAG---KKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAAMGVRYVGPVDGHN 263

Query: 148 LEDLAYVLKQVKAIPDPGAVLIHVITEKEK-------------AMLPLKLQQ-------- 186
           +++L ++L+++  +  P   ++H++T K K                              
Sbjct: 264 VQELVWLLERLVDLDGP--TILHIVTTKGKGLSYAEADPIYWHGPAKFDPATGEYVPSSA 321

Query: 187 ---TRLFCKIL------DNR-------MGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAA 230
              +  F + +      D R       M  G+GL  F +  P R  DVGIAE+ AVT AA
Sbjct: 322 YSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAA 381

Query: 231 GLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTT 290
           G+A +G++P  AIYS+FLQR +DQV HDV ++ L V F IDRAG+VGADG TH G FD +
Sbjct: 382 GMALQGMRPVVAIYSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLS 441

Query: 291 FMACLPNMVVM 301
           F+  +P + + 
Sbjct: 442 FLRSIPGVRIG 452

PyMOL of 2o1x

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Length = 621	Back alignment and structure

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616	Back alignment and structure

>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Length = 369	Back alignment and structure

>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Length = 338	Back alignment and structure

>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Length = 324	Back alignment and structure

>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Length = 324	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Length = 342	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		309
2o1x_A		629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	100.0
2o1s_A		621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	100.0
3rim_A		700	Transketolase, TK; TPP, transferase; HET: TPP; 2.4	100.0
3l84_A		632	Transketolase; TKT, structural genomics, center fo	100.0
3kom_A		663	Transketolase; rossmann fold, csgid, transferase,	100.0
3uk1_A		711	Transketolase; structural genomics, seattle struct	100.0
3mos_A		616	Transketolase, TK; thiamin diphosphate TPP THDP en	100.0
3m49_A		690	Transketolase; alpha-beta-alpha sandwich, csgid, t	100.0
1r9j_A		673	Transketolase; domains, EACH of the alpha/beta typ	100.0
1itz_A		675	Transketolase; calvin cycle, cofactor, thiamine py	100.0
2r8o_A		669	Transketolase 1, TK 1; reaction intermediate, calc	100.0
1gpu_A		680	Transketolase; transferase(ketone residues); HET:	100.0
2e6k_A		651	Transketolase; structural genomics, NPPSFA, nation	100.0
2qtc_A		886	Pyruvate dehydrogenase E1 component; thiamin dipho	100.0
2jgd_A		933	2-oxoglutarate dehydrogenase E1 component; flavopr	100.0
2yic_A		868	2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9	100.0
3ahc_A		845	Phosphoketolase, xylulose 5-phosphate/fructose 6-p	100.0
2xt6_A		1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	100.0
1ik6_A		369	Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o	99.94
1qs0_B		338	2-oxoisovalerate dehydrogenase beta-subunit; heter	99.92
2ozl_B		341	PDHE1-B, pyruvate dehydrogenase E1 component subun	99.92
2bfd_B		342	2-oxoisovalerate dehydrogenase beta subunit; oxido	99.92
1w85_B		324	Pyruvate dehydrogenase E1 component, beta subunit;	99.92
1umd_B		324	E1-beta, 2-OXO acid dehydrogenase beta subunit; al	99.91
2bfd_A		400	2-oxoisovalerate dehydrogenase alpha subunit; oxid	99.9
1w85_A		368	Pyruvate dehydrogenase E1 component, alpha subunit	99.9
1qs0_A		407	2-oxoisovalerate dehydrogenase alpha-subunit; hete	99.89
1umd_A		367	E1-alpha, 2-OXO acid dehydrogenase alpha subunit;	99.89
2ozl_A		365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	99.88
4feg_A		603	Pyruvate oxidase; carbanion, structure activity re	99.41
1ybh_A		590	Acetolactate synthase, chloroplast; acetohydroxyac	99.36
2uz1_A		563	Benzaldehyde lyase; thiamine diphosphate, thiamine	99.36
2iht_A		573	Carboxyethylarginine synthase; thiamin diphosphate	99.34
2pan_A		616	Glyoxylate carboligase; thiamin-diphosphate (THDP)	99.34
1q6z_A		528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	99.33
2vk8_A		563	Pyruvate decarboxylase isozyme 1; asymmetric activ	99.31
1ozh_A		566	ALS, acetolactate synthase, catabolic; acetohydrox	99.31
2pgn_A		589	Cyclohexane-1,2-dione hydrolase (CDH); three alpha	99.3
1t9b_A		677	Acetolactate synthase, mitochondrial; acetohydroxy	99.3
1ovm_A		552	Indole-3-pyruvate decarboxylase; thiamine diphosph	99.27
2vbi_A		566	Pyruvate decarboxylase; thiamine pyrophosphate, ly	99.26
2nxw_A		565	Phenyl-3-pyruvate decarboxylase; thiamine pyrophos	99.25
3eya_A		549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	99.24
1v5e_A		590	Pyruvate oxidase; oxidoreductase, flavoprotein; HE	99.21
2wvg_A		568	PDC, pyruvate decarboxylase; thiamine diphosphate,	99.19
2vbf_A		570	Branched-chain alpha-ketoacid decarboxylase; KDCA,	99.19
2x7j_A		604	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -	99.13
2c31_A		568	Oxalyl-COA decarboxylase; oxalate, thiamin diphosp	99.05
2q28_A		564	Oxalyl-COA decarboxylase; lyase, oxalate degradati	99.05
3hww_A		556	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	98.97
3lq1_A		578	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	98.93
1yd7_A		395	2-keto acid:ferredoxin oxidoreductase subunit alph	98.18
2c42_A		1231	Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,	97.52
2c42_A		1231	Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,	97.09

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}	Back alignment and structure

Probab=100.00  E-value=1.8e-59  Score=476.97  Aligned_cols=296  Identities=36%  Similarity=0.600  Sum_probs=248.7

Q ss_pred             CCCcccCCCC-------CCCCCCCCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHH
Q 041265            1 MRTIRQTCGL-------ENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAI   73 (309)
Q Consensus         1 ~~~~r~~~g~-------e~~~d~~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAl   73 (309)
                      ++++||++|+       ++.++.+++||+|+|||+|+          |+|+|.|+++.+++|||++|||++++|++||||
T Consensus        97 ~~~~r~~~g~~G~p~~~~s~~~~~~~G~~G~gl~~Av----------G~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL  166 (629)
T 2o1x_A           97 MADIKKEGGISGFTKVSESEHDAITVGHASTSLTNAL----------GMALARDAQGKDFHVAAVIGDGSLTGGMALAAL  166 (629)
T ss_dssp             GGGTTSTTSCCSSCCGGGCTTCCSCCSSSSCHHHHHH----------HHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHH
T ss_pred             HhCcccCCCCCCCCCCCCCCCCCcCCCcccccHhHHH----------HHHHHHHHhCCCCeEEEEEchhhhhccHHHHHH
Confidence            4689999988       44567799999999999999          999999999999999999999999999999999


Q ss_pred             HHHhhccCcEEEEEeCcchhhhhhhhhcccchhhc--------------------cCCcc----cchhhhHHhhhcCccc
Q 041265           74 NNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQK--------------------FGGQM----HEIDAFSREIEAGSRA  129 (309)
Q Consensus        74 n~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~--------------------~~~~~----~~~~~~~~~~~~~~~~  129 (309)
                      |+|+.++.||++|++||+|++.++...... ....                    .+.++    .+..++.+..+.+.+.
T Consensus       167 ~~A~~~~~pli~IvnnN~~~i~~~~~~~~~-~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~  245 (629)
T 2o1x_A          167 NTIGDMGRKMLIVLNDNEMSISENVGAMNK-FMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASV  245 (629)
T ss_dssp             HHHHHHCCSEEEEEEECSBSSSBCCSSHHH-HC---------------------------------------------CC
T ss_pred             HHHHhhCCCEEEEEECCCCCCCCChhHHHH-HHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccc
Confidence            999999999999999999976554320000 0000                    00000    0000111111122112


Q ss_pred             hhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh------------------------hh
Q 041265          130 CFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK------------------------LQ  185 (309)
Q Consensus       130 ~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e------------------------~~  185 (309)
                      .+|++|||+++++|||||++++.++++++++.  ++|++||++|+||+||+++|                        .+
T Consensus       246 ~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~--~~P~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~~~~~~~~~~  323 (629)
T 2o1x_A          246 NPFAAMGVRYVGPVDGHNVQELVWLLERLVDL--DGPTILHIVTTKGKGLSYAEADPIYWHGPAKFDPATGEYVPSSAYS  323 (629)
T ss_dssp             CTTGGGTCEEEEEEESSCHHHHHHHHHHHTTS--SSEEEEEEECCTTTTCHHHHHCTTGGGSCCSBCTTTCCBCCCCCCB
T ss_pred             hHHHhcCCeEEeeECCcCHHHHHHHHHHHHhc--CCCEEEEEEEecCCCCChhHcCCcccccCccCCcCcCcccccchHH
Confidence            78999999999899999999999999999876  88999999999999998765                        15


Q ss_pred             HHHHHhhhc-------------ccccCCCCCchhhhhhCCCceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHH
Q 041265          186 QTRLFCKIL-------------DNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCF  252 (309)
Q Consensus       186 ~~~~~~~~l-------------d~dl~~~~~~~~~~~~~p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~  252 (309)
                      |+++|+++|             ++|+.+++++.+|+++||+||||+||+|++|+++|+|||+.|++||+.+|++|++|++
T Consensus       324 ~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~~~~F~~~a~  403 (629)
T 2o1x_A          324 WSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIYSTFLQRAY  403 (629)
T ss_dssp             HHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCGGGEEECCSCHHHHHHHHHHHHHTTCEEEEEEEHHHHGGGH
T ss_pred             HHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHhcCcceEeccccHHHHHHHHHHHHHcCCEEEEEecHHHHHHHH
Confidence            899999887             4888888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265          253 DQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL  309 (309)
Q Consensus       253 dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~  309 (309)
                      |||++++|++++||+++++++|++|++|+|||+.+|+++||++||++|++|+|+.|+
T Consensus       404 dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~  460 (629)
T 2o1x_A          404 DQVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAEL  460 (629)
T ss_dssp             HHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHH
T ss_pred             HHHHHHHhhcCCCEEEEEECCccCCCCCcccCccHHHHHHHccCCcEEEecCCHHHH
Confidence            999999999999999999999988889999999999999999999999999999873

PyMOL of 2o1x

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}	Back alignment and structure

>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}	Back alignment and structure

>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*	Back alignment and structure

>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}	Back alignment and structure

>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*	Back alignment and structure

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*	Back alignment and structure

>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*	Back alignment and structure

>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1	Back alignment and structure

>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1	Back alignment and structure

>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*	Back alignment and structure

>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*	Back alignment and structure

>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}	Back alignment and structure

>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*	Back alignment and structure

>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*	Back alignment and structure

>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*	Back alignment and structure

>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*	Back alignment and structure

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}	Back alignment and structure

>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2	Back alignment and structure

>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B	Back alignment and structure

>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B	Back alignment and structure

>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...	Back alignment and structure

>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*	Back alignment and structure

>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*	Back alignment and structure

>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...	Back alignment and structure

>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*	Back alignment and structure

>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A	Back alignment and structure

>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*	Back alignment and structure

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*	Back alignment and structure

>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*	Back alignment and structure

>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*	Back alignment and structure

>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*	Back alignment and structure

>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*	Back alignment and structure

>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}	Back alignment and structure

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*	Back alignment and structure

>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*	Back alignment and structure

>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*	Back alignment and structure

>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*	Back alignment and structure

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*	Back alignment and structure

>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9	Back alignment and structure

>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}	Back alignment and structure

>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*	Back alignment and structure

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*	Back alignment and structure

>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*	Back alignment and structure

>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*	Back alignment and structure

>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*	Back alignment and structure

>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}	Back alignment and structure

>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*	Back alignment and structure

>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*	Back alignment and structure

>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*	Back alignment and structure

>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}	Back alignment and structure

>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}	Back alignment and structure

>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*	Back alignment and structure

>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		309
d1gpua2		197	c.36.1.6 (A:338-534) Transketolase (TK), Pyr modul	3e-13
d1r9ja1		190	c.36.1.6 (A:337-526) Transketolase (TK), Pyr modul	4e-13
d1itza2		192	c.36.1.6 (A:348-539) Transketolase (TK), Pyr modul	2e-12
d2r8oa1		195	c.36.1.6 (A:333-527) Transketolase (TK), Pyr modul	2e-09

>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.2 bits (158), Expect = 3e-13
 Identities = 22/114 (19%), Positives = 34/114 (29%), Gaps = 2/114 (1%)

Query: 190 FCKILDNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAE--GLKPFCAIYSSF 247
                          +    ++  R    GI E        G++A     KP+   + +F
Sbjct: 49  SNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNF 108

Query: 248 LQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVM 301
           +      V          +  A   +  VG DGPTH           LPN+ V 
Sbjct: 109 VSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVW 162

PyMOL of d1gpua2

>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} Length = 190	Back information, alignment and structure

>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} Length = 192	Back information, alignment and structure

>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} Length = 195	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		309
d2r8oa2		331	Transketolase (TK), PP module {Escherichia coli [T	99.97
d1itza1		338	Transketolase (TK), PP module {Maize (Zea mays) [T	99.96
d1itza2		192	Transketolase (TK), Pyr module {Maize (Zea mays) [	99.96
d1r9ja1		190	Transketolase (TK), Pyr module {Leishmania mexican	99.96
d1gpua2		197	Transketolase (TK), Pyr module {Baker's yeast (Sac	99.96
d2r8oa1		195	Transketolase (TK), Pyr module {Escherichia coli [	99.96
d1gpua1		335	Transketolase (TK), PP module {Baker's yeast (Sacc	99.96
d1r9ja2		336	Transketolase (TK), PP module {Leishmania mexicana	99.95
d1qs0b1		204	2-oxoisovalerate dehydrogenase (E1B), Pyr module {	99.94
d1umdb1		186	Branched-chain alpha-keto acid dehydrogenase, Pyr	99.93
d2ozlb1		192	E1-beta subunit of pyruvate dehydrogenase, Pyr mod	99.93
d1ik6a1		191	E1-beta subunit of pyruvate dehydrogenase, Pyr mod	99.93
d2bfdb1		203	Branched-chain alpha-keto acid dehydrogenase, Pyr	99.92
d1w85a_		365	Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st	99.92
d1w85b1		192	Pyruvate dehydrogenase E1-beta, PdhB, N-terminal d	99.92
d1qs0a_		407	2-oxoisovalerate dehydrogenase (E1B), PP module {P	99.91
d1umda_		362	Branched-chain alpha-keto acid dehydrogenase, PP m	99.91
d2bfda1		395	Branched-chain alpha-keto acid dehydrogenase, PP m	99.9
d2ozla1		361	E1-beta subunit of pyruvate dehydrogenase (PP modu	99.9
d2ieaa2		415	Pyruvate dehydrogenase E1 component, PP module {Es	99.89
d1q6za3		183	Benzoylformate decarboxylase {Pseudomonas putida [	99.41
d2ihta3		198	Carboxyethylarginine synthase {Streptomyces clavul	99.34
d1ozha3		192	Catabolic acetolactate synthase {Klebsiella pneumo	99.29
d1ovma3		196	Indole-3-pyruvate decarboxylase {Enterobacter cloa	99.28
d2djia3		229	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	99.28
d1pvda3		196	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	99.24
d1ybha3		208	Acetohydroxyacid synthase catalytic subunit {Thale	99.2
d2ez9a3		228	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	99.18
d1zpda3		204	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	99.15
d1t9ba3		227	Acetohydroxyacid synthase catalytic subunit {Baker	99.12
d2ji7a3		183	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	99.01
d2ieaa1		230	Pyruvate dehydrogenase E1 component, Pyr module {E	98.88
d2c42a2		447	Pyruvate-ferredoxin oxidoreductase, PFOR, domains	96.21
d2c42a1		257	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I	94.53

>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=8e-32  Score=251.44  Aligned_cols=150  Identities=17%  Similarity=0.210  Sum_probs=125.2

Q ss_pred             CCCcccCCCC-CCCCCC-------CCcCCchhhHhhHhhcccccccchhhHhHhHhcC----------CCCeEEEEEeCC
Q 041265            1 MRTIRQTCGL-ENVHDA-------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLG----------KNNHVISVIVEG   62 (309)
Q Consensus         1 ~~~~r~~~g~-e~~~d~-------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~----------~~~~v~~~~GDG   62 (309)
                      |.+||+.||. ++||+.       ++||++|+|||+|+          |+|++.|+++          .+++|||++|||
T Consensus        86 l~~f~~~gs~~~ghp~~~~~~gve~stGsLG~Gl~~av----------G~Ala~k~~~~~~~~~~~~~~~~~v~~l~GDG  155 (331)
T d2r8oa2          86 LKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAV----------GMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDG  155 (331)
T ss_dssp             HTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHH----------HHHHHHHHHHHHHCBTTBCCCCCCEEEEECHH
T ss_pred             HHhcCCCCCCCCCCCCcCcCCCcccCcCchhhhhHHHH----------HHHHHHHHHhhhhccccccccCceEEEecccc
Confidence            4689999998 666664       99999999999999          9999998854          367899999999


Q ss_pred             ccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265           63 ATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG  141 (309)
Q Consensus        63 ~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~  141 (309)
                      |++||++|||+++|+.++ +||++|.|+|.++...               ....       +...+...+|++|||+|+.
T Consensus       156 el~EG~~wEA~~~A~~~kL~nLi~i~D~N~~~~~g---------------~~~~-------~~~~~~~~rf~afGw~vi~  213 (331)
T d2r8oa2         156 CMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDG---------------HVEG-------WFTDDTAMRFEAYGWHVIR  213 (331)
T ss_dssp             HHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTE---------------EGGG-------TCCCCHHHHHHHTTCEEEE
T ss_pred             cccccchhHhhhhcchhcccceeeHHhhhhhcccc---------------cccc-------ccchhHHHHHHHcCCeeec
Confidence            999999999999999999 7999998888653211               1111       1123346689999999986


Q ss_pred             cCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh
Q 041265          142 PVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK  183 (309)
Q Consensus       142 ~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e  183 (309)
                      .+||||+++|.+|++++++.. ++|++|+++|+||+|.+..|
T Consensus       214 ~~dghd~~~i~~A~~~a~~~~-~kP~~Ii~~TikGkG~~~~e  254 (331)
T d2r8oa2         214 DIDGHDAASIKRAVEEARAVT-DKPSLLMCKTIIGFGSPNKA  254 (331)
T ss_dssp             EEETTCHHHHHHHHHHHHHCC-SSCEEEEEECCTTTTCTTTT
T ss_pred             ccccchHHHHHHHHHHHHhhc-CCCccceeeeeeecCCcccC
Confidence            799999999999999998642 78999999999999988776

PyMOL of d2r8oa2

>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]}	Back information, alignment and structure

>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]}	Back information, alignment and structure

>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}	Back information, alignment and structure

>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}	Back information, alignment and structure

>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}	Back information, alignment and structure

>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}	Back information, alignment and structure

>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}	Back information, alignment and structure

>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}	Back information, alignment and structure

>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}	Back information, alignment and structure

>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}	Back information, alignment and structure

>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}	Back information, alignment and structure

>d2ieaa1 c.36.1.6 (A:471-700) Pyruvate dehydrogenase E1 component, Pyr module {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}	Back information, alignment and structure

>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}	Back information, alignment and structure