Citrus Sinensis ID: 041678

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400--
MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH
ccccEEEEcccccEEcccEEcccccccccHHHHHHHHHHHHHccccEEEEEccccHHcccccccccccEEEEcccccccccccccHHHHHHHHHHccccccccccccEEEEcccHHHHHHHHHccccccEEEEEccccccEEEEEEEEEccccEEEEEEccccEEEEEEccccHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccEEEccccccEEEEEccccHHHHHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHccccHHHHHHHcccccccccccccccEEEEccHHHHHHHHHHHcccccEEEEccccccccEEEccEEEcccHHHHHHHHHHHHHHHHccccccccccccccccc
ccccEEEEEEEEcccccccEEccccccHHHHHHHHHHHHHHHccccEEEEEEcHHHHHccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHcccccEEEEEEcccccccEEEEEEEEccccEEEEEEcccccEEEEEccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccEEEEccccccEEEEEcccccHHHHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHHHccEEEEEccccccccHHHHHHHHHHccccccccHcccccccccccccccccEEEEccHHHHHHHHHHHcccccEEEEEccccccEEEEccEEEcccHHHHHHHHHHHHHHHHHcccccccccccccccc
mglrtgmlsSVSYYihgdnklesprttpdAVMVQNLMAKMLHNGTEAVVMEASShglalgrcsevdFDIAVFTNltrdhmdfhgTEEEYRNAKAKLFsrmvdperhrkvvniddpnatsfiaqgnpdvpVVTFAMenkkadvhplKFELSLFETqvlvntphgileissgllgrhNIYNILAAVAVGIAVGAPLEDIVRGIeevdavpgrcelideeQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVgcagesdrgkrplmtkiatdksdvtiltsdnpmnedpldILDDMLAGVGWTMQEYLKygendyypplpnghrlflHDIRRVAVRCAVAMGEEGDMVVVAGkghetyqiegdkkeffdDREESREALQYVDELHqagidtsefpwrlpesh
mglrtgmlSSVSYYIHgdnklesprtTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLfsrmvdperhRKVVniddpnatsfiaqgnpDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIItvvgcagesdrgkrplmtkiatdksdvtiltsdnpmnedplDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKghetyqiegdkkefFDDREESREALQYVDELhqagidtsefpwrlpesh
MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILaavavgiavgaPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH
**********VSYYIH*************AVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFS*********KVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAG*********************I**********PLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIE******************YVD********************
MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYVDELHQ**IDTS***WR*****
MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH
*GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRL****
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MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query402 2.2.26 [Sep-21-2011]
Q5L0Y0489 UDP-N-acetylmuramoyl-L-al yes no 0.885 0.728 0.416 3e-74
Q81WC7491 UDP-N-acetylmuramoyl-L-al yes no 0.878 0.718 0.388 7e-73
Q03523494 UDP-N-acetylmuramoyl-L-al yes no 0.878 0.714 0.414 9e-73
A4IM04489 UDP-N-acetylmuramoyl-L-al yes no 0.885 0.728 0.413 2e-72
Q819Q0491 UDP-N-acetylmuramoyl-L-al yes no 0.878 0.718 0.385 4e-72
Q8Y5L9491 UDP-N-acetylmuramoyl-L-al yes no 0.888 0.727 0.381 7e-71
Q71XX5491 UDP-N-acetylmuramoyl-L-al yes no 0.883 0.723 0.387 4e-70
Q748D2509 UDP-N-acetylmuramoyl-L-al yes no 0.920 0.726 0.408 7e-69
Q65JY4488 UDP-N-acetylmuramoyl-L-al yes no 0.878 0.723 0.406 9e-69
Q929X9491 UDP-N-acetylmuramoyl-L-al yes no 0.883 0.723 0.379 1e-68
>sp|Q5L0Y0|MURE_GEOKA UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Geobacillus kaustophilus (strain HTA426) GN=murE PE=3 SV=1 Back     alignment and function desciption
 Score =  279 bits (713), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 159/382 (41%), Positives = 230/382 (60%), Gaps = 26/382 (6%)

Query: 2   GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
           G +TG++ +V   + GD    +  TTP+++++Q    +M+  G E V ME SSH L  GR
Sbjct: 127 GKKTGLIGTVHIKV-GDRSYPAANTTPESLILQRTFKQMVDEGVEFVAMEVSSHALHQGR 185

Query: 62  CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRK----VVNIDDPNA 117
               D+D+AVFTNLT+DH+D+HGT EEYRNAK  LF+++ +    R+    V+N DDP +
Sbjct: 186 VHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKFAVLNHDDPVS 245

Query: 118 TSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
             +  +     P+VT+ M  +K+DV   +  ++       + TPHG   + + L+G  N+
Sbjct: 246 QYY--KHMTAAPIVTYGMR-EKSDVMAEQIRMTAGGMAFRLCTPHGSAAVETKLVGSFNV 302

Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
           YNILAA A  +A G  LE I   + +V+ VPGR E +DE Q F +IVDYAHTPD+L   L
Sbjct: 303 YNILAAAAACLASGFSLETIAAALADVEPVPGRFETVDEGQNFTIIVDYAHTPDSLENAL 362

Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
            +VR+LA R +  V+GC G+ D  KRPLM ++A   +DV I TSDNP +EDP  IL DM 
Sbjct: 363 KTVRQLAKRNVYVVIGCGGDRDPSKRPLMAQVAVRYADVAIFTSDNPRSEDPKQILRDME 422

Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
           AGV   + +++          +P+         R  A+R A+   +EGD+V++AGKGHET
Sbjct: 423 AGVSAEIGKHVT---------IPD---------REEAIRYAIGQAQEGDVVLIAGKGHET 464

Query: 358 YQIEGDKKEFFDDREESREALQ 379
           YQI G+    FDDR  +R A++
Sbjct: 465 YQIIGNDVIEFDDRAVARAAVK 486
Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.
Geobacillus kaustophilus (strain HTA426) (taxid: 235909)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 3
>sp|Q81WC7|MURE_BACAN UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Bacillus anthracis GN=murE PE=3 SV=1 Back     alignment and function description
>sp|Q03523|MURE_BACSU UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Bacillus subtilis (strain 168) GN=murE PE=3 SV=1 Back     alignment and function description
>sp|A4IM04|MURE_GEOTN UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=murE PE=3 SV=1 Back     alignment and function description
>sp|Q819Q0|MURE_BACCR UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=murE PE=3 SV=1 Back     alignment and function description
>sp|Q8Y5L9|MURE_LISMO UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=murE PE=3 SV=1 Back     alignment and function description
>sp|Q71XX5|MURE_LISMF UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=murE PE=3 SV=1 Back     alignment and function description
>sp|Q748D2|MURE_GEOSL UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=murE PE=3 SV=1 Back     alignment and function description
>sp|Q65JY4|MURE_BACLD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=murE PE=3 SV=1 Back     alignment and function description
>sp|Q929X9|MURE_LISIN UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=murE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query402
224058479 777 predicted protein [Populus trichocarpa] 1.0 0.517 0.912 0.0
365222938 771 Hop-interacting protein THI138 [Solanum 1.0 0.521 0.900 0.0
255537491 780 UDP-n-acetylmuramoylalanyl-d-glutamate-- 0.995 0.512 0.910 0.0
359474007 774 PREDICTED: UDP-N-acetylmuramoyl-L-alanyl 1.0 0.519 0.917 0.0
240254313 772 Mur-ligase, Mur-ligase-C and Mur-ligase- 1.0 0.520 0.861 0.0
238908349 871 putative UDP-N-acetylmuranoylanalyl-D-2- 1.0 0.461 0.860 0.0
12324934 767 putative UDP-N-acetylmuramoylalanyl-D-gl 0.987 0.517 0.859 0.0
449452306 779 PREDICTED: UDP-N-acetylmuramoyl-L-alanyl 1.0 0.516 0.878 0.0
297840127 767 PDE316 [Arabidopsis lyrata subsp. lyrata 0.987 0.517 0.859 0.0
356511484 748 PREDICTED: UDP-N-acetylmuramoyl-L-alanyl 0.982 0.528 0.850 0.0
>gi|224058479|ref|XP_002299528.1| predicted protein [Populus trichocarpa] gi|222846786|gb|EEE84333.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/402 (91%), Positives = 387/402 (96%)

Query: 1   MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
           MGLRTGMLS+V+YYIHGDNKLE+P T P A++VQNLMAKMLHNGTEAVVMEA+S GLALG
Sbjct: 376 MGLRTGMLSTVAYYIHGDNKLEAPNTIPGAILVQNLMAKMLHNGTEAVVMEATSQGLALG 435

Query: 61  RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
           RC EVDFDIAVFTNLTRDH+DFHGTEEEY+NAKAKLF+RMVDPERHRKVVN+DDPNA  F
Sbjct: 436 RCDEVDFDIAVFTNLTRDHLDFHGTEEEYKNAKAKLFARMVDPERHRKVVNVDDPNAPFF 495

Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
           IAQGN +VPVVTFAMENK ADVHPLK+ELSLFETQVLVNTPHGILEISSGLLG+HNIYNI
Sbjct: 496 IAQGNQEVPVVTFAMENKNADVHPLKYELSLFETQVLVNTPHGILEISSGLLGKHNIYNI 555

Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
           LAAVAVGIAVGAPLEDIVRGIEE+DAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV
Sbjct: 556 LAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 615

Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
           REL P+RIITV+GC GE DRGKRP+MTKIATDKSD+TILTSDNP  EDPLDILDDMLAGV
Sbjct: 616 RELRPKRIITVIGCGGERDRGKRPIMTKIATDKSDMTILTSDNPRGEDPLDILDDMLAGV 675

Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
           GW+MQEYLK+GENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI
Sbjct: 676 GWSMQEYLKHGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 735

Query: 361 EGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH 402
           EGDKKEFFDDREE REALQYVDELHQAGIDTSEFPWRLPESH
Sbjct: 736 EGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH 777

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|365222938|gb|AEW69821.1| Hop-interacting protein THI138 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|255537491|ref|XP_002509812.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] gi|223549711|gb|EEF51199.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359474007|ref|XP_002270348.2| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|240254313|ref|NP_176555.4| Mur-ligase, Mur-ligase-C and Mur-ligase-M domain-containing protein [Arabidopsis thaliana] gi|332196011|gb|AEE34132.1| Mur-ligase, Mur-ligase-C and Mur-ligase-M domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|238908349|emb|CAZ40334.1| putative UDP-N-acetylmuranoylanalyl-D-2-6-diaminoligase [Raphanus sativus] Back     alignment and taxonomy information
>gi|12324934|gb|AAG52413.1|AC011622_1 putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; 54319-51679 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449452306|ref|XP_004143900.1| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase-like [Cucumis sativus] gi|449495779|ref|XP_004159942.1| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297840127|ref|XP_002887945.1| PDE316 [Arabidopsis lyrata subsp. lyrata] gi|297333786|gb|EFH64204.1| PDE316 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356511484|ref|XP_003524456.1| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query402
TAIR|locus:2026699772 MURE [Arabidopsis thaliana (ta 1.0 0.520 0.834 2.5e-184
TIGR_CMR|BA_4053491 BA_4053 "UDP-N-acetylmuramoyla 0.753 0.617 0.385 2.6e-67
TIGR_CMR|CHY_2074492 CHY_2074 "UDP-N-acetylmuramoyl 0.756 0.617 0.398 1.3e-63
TIGR_CMR|GSU_3074509 GSU_3074 "UDP-N-acetylmuramoyl 0.920 0.726 0.395 4.8e-62
UNIPROTKB|Q83F28489 murE "UDP-N-acetylmuramoyl-L-a 0.731 0.601 0.380 1.8e-56
TIGR_CMR|CBU_0123489 CBU_0123 "UDP-N-acetylmuramoyl 0.731 0.601 0.380 1.8e-56
TIGR_CMR|SO_4224491 SO_4224 "UDP-N-acetylmuramoyla 0.689 0.564 0.354 2.9e-50
UNIPROTKB|P22188495 murE [Escherichia coli K-12 (t 0.676 0.549 0.361 2e-49
UNIPROTKB|Q604V3479 murE "UDP-N-acetylmuramoyl-L-a 0.728 0.611 0.345 4.2e-49
UNIPROTKB|Q9X6N4495 murE "UDP-N-acetylmuramoyl-L-a 0.713 0.579 0.332 6e-46
TAIR|locus:2026699 MURE [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1788 (634.5 bits), Expect = 2.5e-184, P = 2.5e-184
 Identities = 337/404 (83%), Positives = 369/404 (91%)

Query:     1 MGLRTGMLSSVSYYIHGDNKLESPRTT--PDAVMVQNLMAKMLHNGTEAVVMEASSHGLA 58
             MG+RTGM S+VS YIHGDNKL++P  T  PDAV+VQ+LMAKMLHNGTE++VMEAS   LA
Sbjct:   369 MGVRTGMFSTVSCYIHGDNKLDTPNATMNPDAVLVQSLMAKMLHNGTESLVMEASPQELA 428

Query:    59 LGRCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNAT 118
             LG+C EVDFDIAVFTNLTR++ DF GT+EEYR+A+AKLFSRMVDPERHRKVVNIDDPNA 
Sbjct:   429 LGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFSRMVDPERHRKVVNIDDPNAA 488

Query:   119 SFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIY 178
              F+ QGNP+VPVVTFAMEN KADVHPLKFELSLFETQVLVNTP GILEISSGLLGRHNIY
Sbjct:   489 FFVQQGNPNVPVVTFAMENTKADVHPLKFELSLFETQVLVNTPQGILEISSGLLGRHNIY 548

Query:   179 NILXXXXXXXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLD 238
             NIL           PLEDIVRG+EEVDAVPGRCELIDEEQAFGVIVD+A+TPD LSRLLD
Sbjct:   549 NILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFGVIVDHANTPDGLSRLLD 608

Query:   239 SVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLA 298
             S+REL PRRIITV+GC GE++RGKRPLMTKIAT+KSDVT+LTSDNP NEDPLDILDDML+
Sbjct:   609 SIRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDVTMLTSDNPRNEDPLDILDDMLS 668

Query:   299 GVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETY 358
             G+GWTMQEYLK+GE+DYYPPL NGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHE Y
Sbjct:   669 GIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHEAY 728

Query:   359 QIEGDKKEFFDDREESREALQYVDELHQAGIDTSEFPWRLPESH 402
             Q+EG+KKEF+DDREE REALQYVDELHQAGIDTSEFPWRLPESH
Sbjct:   729 QLEGEKKEFYDDREECREALQYVDELHQAGIDTSEFPWRLPESH 772
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0008360 "regulation of cell shape" evidence=IEA
GO:0009058 "biosynthetic process" evidence=IEA;ISS
GO:0016874 "ligase activity" evidence=IEA;ISS
GO:0016881 "acid-amino acid ligase activity" evidence=IEA
GO:0051301 "cell division" evidence=IEA
GO:0009295 "nucleoid" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0009658 "chloroplast organization" evidence=RCA;IMP
GO:0010020 "chloroplast fission" evidence=IMP
GO:0006364 "rRNA processing" evidence=RCA
GO:0006399 "tRNA metabolic process" evidence=RCA
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0034660 "ncRNA metabolic process" evidence=RCA
GO:0042793 "transcription from plastid promoter" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TIGR_CMR|BA_4053 BA_4053 "UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2074 CHY_2074 "UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3074 GSU_3074 "UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q83F28 murE "UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0123 CBU_0123 "UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4224 SO_4224 "UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P22188 murE [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q604V3 murE "UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
UNIPROTKB|Q9X6N4 murE "UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.20.766
3rd Layer6.3.2.130.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
PRK00139460 PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-gluta 1e-141
TIGR01085464 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide sy 1e-124
COG0769475 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synt 1e-116
PRK11929 958 PRK11929, PRK11929, putative bifunctional UDP-N-ac 1e-103
PRK14022481 PRK14022, PRK14022, UDP-N-acetylmuramoylalanyl-D-g 1e-62
pfam08245178 pfam08245, Mur_ligase_M, Mur ligase middle domain 8e-42
COG0771448 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-gluta 1e-26
COG0770451 COG0770, MurF, UDP-N-acetylmuramyl pentapeptide sy 6e-26
COG0773459 COG0773, MurC, UDP-N-acetylmuramate-alanine ligase 1e-23
TIGR01143417 TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide-- 3e-23
PRK00421461 PRK00421, murC, UDP-N-acetylmuramate--L-alanine li 2e-22
pfam0287588 pfam02875, Mur_ligase_C, Mur ligase family, glutam 6e-20
PRK02472447 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 2e-19
TIGR01087433 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-gl 3e-19
TIGR01082448 TIGR01082, murC, UDP-N-acetylmuramate--alanine lig 2e-18
PRK11929958 PRK11929, PRK11929, putative bifunctional UDP-N-ac 5e-18
PRK01390460 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 8e-16
TIGR02068864 TIGR02068, cya_phycin_syn, cyanophycin synthetase 2e-14
PRK03803448 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 1e-13
PRK14106450 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 2e-13
PRK02705459 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 3e-12
PRK01710458 PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 8e-12
PRK10773453 PRK10773, murF, UDP-N-acetylmuramoyl-tripeptide--D 1e-11
PRK01368454 PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 1e-11
COG0285427 COG0285, FolC, Folylpolyglutamate synthase [Coenzy 3e-11
PRK04663438 PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 7e-11
TIGR01499398 TIGR01499, folC, folylpolyglutamate synthase/dihyd 2e-09
PRK02006498 PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 3e-09
PRK03806438 PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 4e-08
PRK04690468 PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 1e-07
PRK14016727 PRK14016, PRK14016, cyanophycin synthetase; Provis 4e-07
PRK04308445 PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 2e-06
PRK14573 809 PRK14573, PRK14573, bifunctional D-alanyl-alanine 2e-05
PRK00141473 PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 3e-05
PRK01438480 PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 3e-05
TIGR01081448 TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamm 1e-04
PLN02913510 PLN02913, PLN02913, dihydrofolate synthetase 0.002
>gnl|CDD|234660 PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional Back     alignment and domain information 
 Score =  409 bits (1054), Expect = e-141
 Identities = 153/379 (40%), Positives = 214/379 (56%), Gaps = 40/379 (10%)

Query: 1   MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
           +G +T ++ ++   I G   + S  TTPDA+ +Q L+A+++  G     ME SSH L  G
Sbjct: 120 LGEKTALIGTLGNGI-GGELIPSGLTTPDALDLQRLLAELVDAGVTYAAMEVSSHALDQG 178

Query: 61  RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
           R   + FD+AVFTNL+RDH+D+HGT E+Y  AKA+LF           V+N DD      
Sbjct: 179 RVDGLKFDVAVFTNLSRDHLDYHGTMEDYLAAKARLF----SELGLAAVINADDEVGRRL 234

Query: 121 IAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNI 180
           +A          +A+    AD+     E +       + T     E+ S L+GR N+ N+
Sbjct: 235 LA------LPDAYAVSMAGADLRATDVEYTDSGQTFTLVT-----EVESPLIGRFNVSNL 283

Query: 181 LAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV 240
           LAA+A  +A+G PLED +  + ++  VPGR E +D  Q   VIVDYAHTPDAL ++L+++
Sbjct: 284 LAALAALLALGVPLEDALAALAKLQGVPGRMERVDAGQGPLVIVDYAHTPDALEKVLEAL 343

Query: 241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGV 300
           R  A  R+I V GC G+ D+GKRPLM  IA   +DV I+TSDNP +EDP  I+ D+LAG+
Sbjct: 344 RPHAKGRLICVFGCGGDRDKGKRPLMGAIAERLADVVIVTSDNPRSEDPAAIIADILAGI 403

Query: 301 GWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQI 360
              +                        D R  A+R A+A  + GD+V++AGKGHE YQI
Sbjct: 404 YDVI-----------------------ED-RAEAIRYAIAQAKPGDVVLIAGKGHEDYQI 439

Query: 361 EGDKKEFFDDREESREALQ 379
            G  K  FDDRE +REAL 
Sbjct: 440 IGGVKIPFDDREVAREALA 458

Length = 460
>gnl|CDD|233265 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase Back     alignment and domain information
>gnl|CDD|223840 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional Back     alignment and domain information
>gnl|CDD|237588 PRK14022, PRK14022, UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional Back     alignment and domain information
>gnl|CDD|219763 pfam08245, Mur_ligase_M, Mur ligase middle domain Back     alignment and domain information
>gnl|CDD|223842 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|223841 COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|223844 COG0773, MurC, UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|233291 TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase Back     alignment and domain information
>gnl|CDD|234757 PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>gnl|CDD|217262 pfam02875, Mur_ligase_C, Mur ligase family, glutamate ligase domain Back     alignment and domain information
>gnl|CDD|235041 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|233266 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase Back     alignment and domain information
>gnl|CDD|233264 TIGR01082, murC, UDP-N-acetylmuramate--alanine ligase Back     alignment and domain information
>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional Back     alignment and domain information
>gnl|CDD|234950 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|233705 TIGR02068, cya_phycin_syn, cyanophycin synthetase Back     alignment and domain information
>gnl|CDD|235160 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|184511 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|235059 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|179323 PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|182718 PRK10773, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed Back     alignment and domain information
>gnl|CDD|179286 PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|223362 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|179871 PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|233440 TIGR01499, folC, folylpolyglutamate synthase/dihydrofolate synthase Back     alignment and domain information
>gnl|CDD|234995 PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|179651 PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|179872 PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|237586 PRK14016, PRK14016, cyanophycin synthetase; Provisional Back     alignment and domain information
>gnl|CDD|167786 PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>gnl|CDD|234662 PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|179297 PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|130153 TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase Back     alignment and domain information
>gnl|CDD|178501 PLN02913, PLN02913, dihydrofolate synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 402
PRK00139460 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-d 100.0
COG0769475 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell 100.0
PRK11929 958 putative bifunctional UDP-N-acetylmuramoylalanyl-D 100.0
TIGR01085464 murE UDP-N-acetylmuramyl-tripeptide synthetase. A 100.0
PRK14022481 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine l 100.0
TIGR01499397 folC folylpolyglutamate synthase/dihydrofolate syn 100.0
TIGR01143417 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a 100.0
PRK10846416 bifunctional folylpolyglutamate synthase/ dihydrof 100.0
PRK10773453 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a 100.0
PRK03803448 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
COG0770451 MurF UDP-N-acetylmuramyl pentapeptide synthase [Ce 100.0
COG0771448 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas 100.0
PRK14093479 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminop 100.0
COG0285427 FolC Folylpolyglutamate synthase [Coenzyme metabol 100.0
PLN02913510 dihydrofolate synthetase 100.0
TIGR01087433 murD UDP-N-acetylmuramoylalanine--D-glutamate liga 100.0
PRK01390460 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
COG0773459 MurC UDP-N-acetylmuramate-alanine ligase [Cell env 100.0
PRK01368454 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK01438480 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
TIGR02068864 cya_phycin_syn cyanophycin synthetase. Cyanophycin 100.0
PRK00421461 murC UDP-N-acetylmuramate--L-alanine ligase; Provi 100.0
PRK04663438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK01710458 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK03369488 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK11930 822 putative bifunctional UDP-N-acetylmuramoyl-tripept 100.0
PRK00141473 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK04308445 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK02705459 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK02472447 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK03806438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK14106450 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
TIGR01082448 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a 100.0
PRK11929958 putative bifunctional UDP-N-acetylmuramoylalanyl-D 100.0
PRK02006498 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK04690468 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
TIGR01081448 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl 100.0
PLN02881530 tetrahydrofolylpolyglutamate synthase 100.0
PRK03815401 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK00683418 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK14573 809 bifunctional D-alanyl-alanine synthetase A/UDP-N-a 100.0
KOG2525496 consensus Folylpolyglutamate synthase [Coenzyme tr 99.95
PF08245188 Mur_ligase_M: Mur ligase middle domain; InterPro: 99.92
PRK14016727 cyanophycin synthetase; Provisional 99.92
PF0287591 Mur_ligase_C: Mur ligase family, glutamate ligase 99.65
PF08353113 DUF1727: Domain of unknown function (DUF1727); Int 84.27
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-50  Score=403.73  Aligned_cols=340  Identities=45%  Similarity=0.693  Sum_probs=281.7

Q ss_pred             CCCceEEEeccceEeCCceecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCCcchh
Q 041678            1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHM   80 (402)
Q Consensus         1 ~g~~~g~~~t~g~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl   80 (402)
                      .|.++|+.||.+..+++. ..+...+||+++.+..+|..+.+.++|++|+|+|++|....++..++|+++|||||++||+
T Consensus       120 ~g~~~~~~gn~~~~i~~~-~~~~~~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~~~~~~~l~~~~p~iaViTnI~~dHl  198 (460)
T PRK00139        120 LGEKTALIGTLGNGIGGE-LIPSGLTTPDALDLQRLLAELVDAGVTYAAMEVSSHALDQGRVDGLKFDVAVFTNLSRDHL  198 (460)
T ss_pred             cCCCEEEECCcccccCCe-ecccCCCCcCHHHHHHHHHHHHHCCCCEEEEEcchhhHhhchhcCCcCCEEEEcCCCcccC
Confidence            478899999999998763 3445678999999999998998999999999999877533445568999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEeccCCCCceEEeeEEeecCceEEEEEc
Q 041678           81 DFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAMENKKADVHPLKFELSLFETQVLVNT  160 (402)
Q Consensus        81 ~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
                      ++|||+|+|+++|++|++..    .+.+|+|.||+....+..      ++.+|+.....+++....+.....+..|.+..
T Consensus       199 ~~~gt~e~i~~~K~~i~~~~----~~~~v~n~dd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (460)
T PRK00139        199 DYHGTMEDYLAAKARLFSEL----GLAAVINADDEVGRRLLA------LPDAYAVSMAGADLRATDVEYTDSGQTFTLVT  268 (460)
T ss_pred             CcCCCHHHHHHHHHHHHhcC----CCeEEEEcCcHhHHHHHh------hcEEEEecCCCCcEEEEEEEEecCceEEEEEE
Confidence            99999999999999999863    248999999998776653      13566652123456554443333344454431


Q ss_pred             CCeeEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEECCCCHHHHHHHHHHH
Q 041678          161 PHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSV  240 (402)
Q Consensus       161 ~~~~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~l~~l  240 (402)
                           .+.++++|.||++|+++|++++..+|++++.|+++|++|++++||||++...+++++|+||||||+|++++++++
T Consensus       269 -----~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~iI~DyahNP~s~~aal~~l  343 (460)
T PRK00139        269 -----EVESPLIGRFNVSNLLAALAALLALGVPLEDALAALAKLQGVPGRMERVDAGQGPLVIVDYAHTPDALEKVLEAL  343 (460)
T ss_pred             -----EEEecccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCCcEEEEcCCCCEEEEECCCCHHHHHHHHHHH
Confidence                 567899999999999999999999999999999999999999999999986568899999999999999999999


Q ss_pred             hhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCCCCCC
Q 041678          241 RELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLP  320 (402)
Q Consensus       241 ~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (402)
                      ++.+++|+++|+|++++|+..++.++..+.....|.+++++++++.+++.++.+.+..+.                    
T Consensus       344 ~~~~~~r~i~VlG~g~~k~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~--------------------  403 (460)
T PRK00139        344 RPHAKGRLICVFGCGGDRDKGKRPLMGAIAERLADVVIVTSDNPRSEDPAAIIADILAGI--------------------  403 (460)
T ss_pred             HhhcCCcEEEEECCCCCCchhhhHHHHHHHHHcCCEEEEECCCCCCCCHHHHHHHHHhCC--------------------
Confidence            876556899999998899998888888888788899999998899998877665432210                    


Q ss_pred             CCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeecCcHHHHHHHHHh
Q 041678          321 NGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQY  380 (402)
Q Consensus       321 ~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (402)
                          ...++++++|++.+.+.+++||+||++|+|++.|+.+.+.+.+|.+.+..++++++
T Consensus       404 ----~~~~~d~~~Ai~~~~~~~~~gDvVLv~G~G~e~~~~~~~~~~~~~d~~~~~~~l~~  459 (460)
T PRK00139        404 ----YDVIEDRAEAIRYAIAQAKPGDVVLIAGKGHEDYQIIGGVKIPFDDREVAREALAE  459 (460)
T ss_pred             ----CcccCCHHHHHHHHHHhcCCCCEEEEEEccCcccEEECCEEecCChHHHHHHHHhh
Confidence                12356789999999999999999999999999999999999999999999998754

>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional Back     alignment and domain information
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase Back     alignment and domain information
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional Back     alignment and domain information
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase Back     alignment and domain information
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase Back     alignment and domain information
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional Back     alignment and domain information
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed Back     alignment and domain information
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional Back     alignment and domain information
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism] Back     alignment and domain information
>PLN02913 dihydrofolate synthetase Back     alignment and domain information
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase Back     alignment and domain information
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>TIGR02068 cya_phycin_syn cyanophycin synthetase Back     alignment and domain information
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional Back     alignment and domain information
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase Back     alignment and domain information
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional Back     alignment and domain information
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase Back     alignment and domain information
>PLN02881 tetrahydrofolylpolyglutamate synthase Back     alignment and domain information
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment Back     alignment and domain information
>PRK14016 cyanophycin synthetase; Provisional Back     alignment and domain information
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family Back     alignment and domain information
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
2wtz_A535 Mure Ligase Of Mycobacterium Tuberculosis Length = 2e-46
1e8c_A498 Structure Of Mure The Udp-N-Acetylmuramyl Tripeptid 7e-46
1j6u_A469 Crystal Structure Of Udp-N-Acetylmuramate-Alanine L 5e-05
>pdb|2WTZ|A Chain A, Mure Ligase Of Mycobacterium Tuberculosis Length = 535 Back     alignment and structure 
Iteration: 1

 Score =  182 bits (463), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 184/376 (48%), Gaps = 32/376 (8%)
Query: 2   GLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGR 61
           G   G++ ++   + G + L S  TTP+A  +Q ++A M+  G + VVME SSH LALGR
Sbjct: 172 GRVAGLIGTIGIRVGGAD-LPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGR 230
Query: 62  CSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPE---RHR-KVVNIDDPNA 117
                F +  FTNL+RDH+DFH +  +Y  A A LF    DP+   R R  VV IDD   
Sbjct: 231 VDGTRFAVGAFTNLSRDHLDFHPSMADYFEAXASLF----DPDSALRARTAVVCIDDDAG 286
Query: 118 TSFIAQGNPDVPVVTF--AMENKKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRH 175
            +  A+    + V         +  DV P       F         H    I   L GR+
Sbjct: 287 RAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGH---HIGIRLPGRY 343
Query: 176 NIYNILXXXXXXXXXXXPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSR 235
           N+ N L             E  V G+ E+  VPGR E ID  Q F  +VDYAH P+AL  
Sbjct: 344 NVANCLVALAILDTVGVSPEQAVPGLREIR-VPGRLEQIDRGQGFLALVDYAHKPEALRS 402
Query: 236 LLDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDD 295
           +L ++     RR+  V G  G+ D GKR  M +IA   +D+ ++T DNP +EDP  I  +
Sbjct: 403 VLTTLAH-PDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRRE 461
Query: 296 MLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGH 355
           +LAG         + G +     + +         RR A+R AVA    GD+V++AGKGH
Sbjct: 462 ILAGAA-------EVGGDAQVVEIAD---------RRDAIRHAVAWARPGDVVLIAGKGH 505
Query: 356 ETYQIEGDKKEFFDDR 371
           ET Q  G +   FDDR
Sbjct: 506 ETGQRGGGRVRPFDDR 521
>pdb|1E8C|A Chain A, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide Synthetase From E. Coli Length = 498 Back     alignment and structure
>pdb|1J6U|A Chain A, Crystal Structure Of Udp-N-Acetylmuramate-Alanine Ligase Murc (Tm0231) From Thermotoga Maritima At 2.3 A Resolution Length = 469 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
1e8c_A498 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami 1e-160
2wtz_A535 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di 1e-158
1gg4_A452 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino 5e-29
3lk7_A451 UDP-N-acetylmuramoylalanine--D-glutamate ligase; a 1e-28
1p3d_A475 UDP-N-acetylmuramate--alanine ligase; alpha/beta p 3e-25
2x5o_A439 UDP-N-acetylmuramoylalanine--D-glutamate ligase; A 8e-25
2f00_A491 UDP-N-acetylmuramate--L-alanine ligase; amide bond 3e-24
3hn7_A524 UDP-N-acetylmuramate-L-alanine ligase; ATP-binding 6e-22
1j6u_A469 UDP-N-acetylmuramate-alanine ligase MURC; structur 2e-21
2am1_A454 SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl 8e-21
3eag_A326 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME 4e-16
1o5z_A442 Folylpolyglutamate synthase/dihydrofolate synthas; 1e-13
2vos_A487 Folylpolyglutamate synthase protein FOLC; ligase, 7e-12
1jbw_A428 Folylpolyglutamate synthase; FPGS folate AMPPCP te 8e-12
1w78_A422 FOLC bifunctional protein; DHFS, dihydrofolate syn 3e-10
3nrs_A437 Dihydrofolate:folylpolyglutamate synthetase; struc 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 498 Back     alignment and structure
 Score =  457 bits (1179), Expect = e-160
 Identities = 128/389 (32%), Positives = 194/389 (49%), Gaps = 26/389 (6%)

Query: 1   MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALG 60
           +G  + ++ +V   +     + +  TT  AV VQ+ +A ++  G     ME SSHGL   
Sbjct: 133 LGEISAVMGTVGNGL-LGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQH 191

Query: 61  RCSEVDFDIAVFTNLTRDHMDFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSF 120
           R + + F  +VFTNL+RDH+D+HG  E Y  AK  L+S        + ++N DD     +
Sbjct: 192 RVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE---HHCGQAIINADDEVGRRW 248

Query: 121 IAQGNPDVPVVTFAMEN---KKADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNI 177
           +A+    V V      N       +   +         +  ++  G  EI S L+G  N+
Sbjct: 249 LAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNV 308

Query: 178 YNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLL 237
            N+L A+A  +A+G PL D+++    +  V GR E+        V+VDYAHTPDAL + L
Sbjct: 309 SNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKAL 368

Query: 238 DSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDML 297
            + R     ++  V GC G+ D+GKRPLM  IA + +DV ++T DNP  E+P  I++D+L
Sbjct: 369 QAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDIL 428

Query: 298 AGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHET 357
           AG+                     GH   +   R  AV CAV   +E D+V+VAGKGHE 
Sbjct: 429 AGML------------------DAGHAKVMEG-RAEAVTCAVMQAKENDVVLVAGKGHED 469

Query: 358 YQIEGDKKEFFDDREESREALQYVDELHQ 386
           YQI G+++  + DR      L  +   H 
Sbjct: 470 YQIVGNQRLDYSDRVTVARLLGVIARSHH 498
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A* Length = 535 Back     alignment and structure
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 452 Back     alignment and structure
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Length = 451 Back     alignment and structure
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Length = 475 Back     alignment and structure
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439 Back     alignment and structure
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} Length = 491 Back     alignment and structure
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} Length = 524 Back     alignment and structure
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Length = 469 Back     alignment and structure
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A* Length = 454 Back     alignment and structure
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} Length = 326 Back     alignment and structure
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 Length = 442 Back     alignment and structure
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* Length = 487 Back     alignment and structure
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A Length = 428 Back     alignment and structure
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* Length = 422 Back     alignment and structure
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A* Length = 437 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query402
1e8c_A498 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami 100.0
2wtz_A535 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di 100.0
2vos_A487 Folylpolyglutamate synthase protein FOLC; ligase, 100.0
1jbw_A428 Folylpolyglutamate synthase; FPGS folate AMPPCP te 100.0
3nrs_A437 Dihydrofolate:folylpolyglutamate synthetase; struc 100.0
3hn7_A524 UDP-N-acetylmuramate-L-alanine ligase; ATP-binding 100.0
1gg4_A452 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino 100.0
3lk7_A451 UDP-N-acetylmuramoylalanine--D-glutamate ligase; a 100.0
2am1_A454 SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl 100.0
1o5z_A442 Folylpolyglutamate synthase/dihydrofolate synthas; 100.0
4hv4_A494 UDP-N-acetylmuramate--L-alanine ligase; MURC, yers 100.0
1w78_A422 FOLC bifunctional protein; DHFS, dihydrofolate syn 100.0
1p3d_A475 UDP-N-acetylmuramate--alanine ligase; alpha/beta p 100.0
2f00_A491 UDP-N-acetylmuramate--L-alanine ligase; amide bond 100.0
2x5o_A439 UDP-N-acetylmuramoylalanine--D-glutamate ligase; A 100.0
1j6u_A469 UDP-N-acetylmuramate-alanine ligase MURC; structur 100.0
3eag_A326 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME 99.93
3mvn_A163 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M 99.84
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Back     alignment and structure
Probab=100.00  E-value=6.6e-55  Score=438.59  Aligned_cols=356  Identities=35%  Similarity=0.526  Sum_probs=297.6

Q ss_pred             CCCceEEEeccceEeCCceecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCCcchh
Q 041678            1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHM   80 (402)
Q Consensus         1 ~g~~~g~~~t~g~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl   80 (402)
                      .|.++|+.||.|..+++. ..+...++|++.+++.++..|.+.++|++|+|+|++++...+...++|+++|||||++||+
T Consensus       133 ~g~~~~~~gs~~~~i~~~-~~~~~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~~~p~vaViTNI~~DHl  211 (498)
T 1e8c_A          133 LGEISAVMGTVGNGLLGK-VIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHL  211 (498)
T ss_dssp             TTCCEEEEETTEEEETTC-CBCCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTCBCSEEEECCCCSCCH
T ss_pred             CCCCEEEECCCCcccCCe-eeecCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCchhhcccccccCCCEEEEeCCChhhh
Confidence            478999999999998753 3455679999999999888898999999999999866522344457899999999999999


Q ss_pred             ccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccC-CCCCEEEEeccCCCC---ceEEeeEEeecCceEE
Q 041678           81 DFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGN-PDVPVVTFAMENKKA---DVHPLKFELSLFETQV  156 (402)
Q Consensus        81 ~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~-~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~  156 (402)
                      ++|||+|+|+.+|++||+.   ++++.+|+|.||+....+.+... .++++++|+.. ..+   ++....+.....+..|
T Consensus       212 d~~gt~e~ia~aK~~i~~~---~~~~~~V~n~dd~~~~~~~~~~~~~~~~v~~~g~~-~~~~~~d~~~~~~~~~~~g~~f  287 (498)
T 1e8c_A          212 DYHGDMEHYEAAKWLLYSE---HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHIN-PNCHGRWLKATEVNYHDSGATI  287 (498)
T ss_dssp             HHHSSHHHHHHHHHHHHHT---SBCCEEEEETTSHHHHHHHTTCTTCEEEESSSCCC-TTTCSEEEEEEEEEECSSCEEE
T ss_pred             hccCCHHHHHHHHHHHhcc---CCCCeEEEECCCHHHHHHHHhhhccCCcEEEEecC-CCCCcCCEEEEEEEEcCCceEE
Confidence            9999999999999999985   23578999999998888765431 11267788863 234   6766666555566677


Q ss_pred             EEEcCCeeEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeeeecCCCeEEEEECCCCHHHHHHH
Q 041678          157 LVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRL  236 (402)
Q Consensus       157 ~~~~~~~~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~~~gR~e~i~~~~g~~vi~D~ahnp~s~~~~  236 (402)
                      .+...++.+.+.++++|.||++|+++|++++..+|++.+.|+++|++|+++|||||++...+++++|+||||||+|++++
T Consensus       288 ~~~~~~~~~~~~l~l~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~gR~e~v~~~~~~~vi~DyahnP~s~~a~  367 (498)
T 1e8c_A          288 RFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKA  367 (498)
T ss_dssp             EEEETTCCEEEEECSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHGGGCCCCTTSSEEECCTTSCEEEEECCCSHHHHHHH
T ss_pred             EEEECCceEEEEecCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEEcCCCCEEEEECCCCHHHHHHH
Confidence            77655556678999999999999999999999999999999999999999999999998655779999999999999999


Q ss_pred             HHHHhhhCCCcEEEEEccCCCCCCCChHHHHHHHhhcCCEEEEccCCCCCCCHHHHHHHHHhcccchhhhhhhcCCCCCC
Q 041678          237 LDSVRELAPRRIITVVGCAGESDRGKRPLMTKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYY  316 (402)
Q Consensus       237 l~~l~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  316 (402)
                      ++++++++++|+++|||++++|+..++.++..++...+|.++++++++|.+++..+.+.+..++..              
T Consensus       368 l~~l~~~~~~r~i~V~G~g~dr~~~~~~~~~~~~~~~~d~vi~~~~~~r~e~~~~i~~~~~~~~~~--------------  433 (498)
T 1e8c_A          368 LQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD--------------  433 (498)
T ss_dssp             HHHHHHTCSSCEEEEECCCSSSCSTHHHHHHHHHHHHCSEEEECCSCCBTSCHHHHHHHHHTTSSC--------------
T ss_pred             HHHHHhhCCCCEEEEECCCCCcchhHHHHHHHHHHhCCCEEEEcCCCCCCCCHHHHHHHHHhhccc--------------
Confidence            999998765789999999889988877788887777899999999999999998877654332210              


Q ss_pred             CCCCCCCceeecccHHHHHHHHHHhCCCCcEEEEecCCCcceEEeCCEeeecCcHHHHHHHHHh
Q 041678          317 PPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQY  380 (402)
Q Consensus       317 ~~~~~~~~~~~~~~~~~a~~~a~~~~~~gD~VLv~Gsg~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (402)
                           ...+..++++++|++.+.+.+++||+||++|+|++.|+.+++.+.+|+++++.+++++.
T Consensus       434 -----~~~~~~~~~~~~ai~~a~~~a~~gd~VLv~GkG~~~~q~~~~~~~~f~d~~~~~~~l~~  492 (498)
T 1e8c_A          434 -----AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLGV  492 (498)
T ss_dssp             -----GGGSEECSCHHHHHHHHHHHSCTTCEEEEESCTTCCEEEETTEEEECCHHHHHHHHHTS
T ss_pred             -----cCceEEECCHHHHHHHHHHhCCCCCEEEEecCCCcceEEECCEEecCChHHHHHHHHHh
Confidence                 00234567899999999999999999999999999999999999999999999999764
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A* Back     alignment and structure
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* Back     alignment and structure
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A Back     alignment and structure
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A* Back     alignment and structure
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} Back     alignment and structure
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Back     alignment and structure
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Back     alignment and structure
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A* Back     alignment and structure
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 Back     alignment and structure
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A Back     alignment and structure
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* Back     alignment and structure
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Back     alignment and structure
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} Back     alignment and structure
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Back     alignment and structure
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Back     alignment and structure
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} Back     alignment and structure
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 402
d1e8ca2160 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptid 2e-33
d1p3da3215 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine 7e-22
d1e8ca3234 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptid 2e-19
d1gg4a4214 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl 3e-16
d2gc6a1129 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase 2e-11
d1j6ua2151 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine 1e-10
d1o5za1137 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase 1e-10
d1p3da2152 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine 3e-09
d1j6ua3207 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine l 8e-09
d2jfga3204 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine 5e-08
d1o5za2296 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase 7e-05
d2gc6a2296 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase { 0.002
>d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Length = 160 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

 Score =  120 bits (302), Expect = 2e-33
 Identities = 64/179 (35%), Positives = 90/179 (50%), Gaps = 19/179 (10%)

Query: 207 VPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELAPRRIITVVGCAGESDRGKRPLM 266
           V GR E+        V+VDYAHTPDAL + L + R     ++  V GC G+ D+GKRPLM
Sbjct: 1   VCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLM 60

Query: 267 TKIATDKSDVTILTSDNPMNEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLF 326
             IA + +DV ++T DNP  E+P                   +   ND    + +     
Sbjct: 61  GAIAEEFADVAVVTDDNPRTEEP-------------------RAIINDILAGMLDAGHAK 101

Query: 327 LHDIRRVAVRCAVAMGEEGDMVVVAGKGHETYQIEGDKKEFFDDREESREALQYVDELH 385
           + + R  AV CAV   +E D+V+VAGKGHE YQI G+++  + DR      L  +   H
Sbjct: 102 VMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLGVIARSH 160
>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Length = 215 Back     information, alignment and structure
>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Length = 234 Back     information, alignment and structure
>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Length = 214 Back     information, alignment and structure
>d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]} Length = 129 Back     information, alignment and structure
>d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Length = 151 Back     information, alignment and structure
>d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 137 Back     information, alignment and structure
>d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Length = 152 Back     information, alignment and structure
>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Length = 207 Back     information, alignment and structure
>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 204 Back     information, alignment and structure
>d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase {Thermotoga maritima [TaxId: 2336]} Length = 296 Back     information, alignment and structure
>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} Length = 296 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query402
d1e8ca3234 UDP-N-acetylmuramyl tripeptide synthetase MurE {Es 99.97
d1e8ca2160 UDP-N-acetylmuramyl tripeptide synthetase MurE {Es 99.95
d1gg4a4214 UDP-murNac-tripeptide D-alanyl-D-alanine-adding en 99.94
d1p3da3215 UDP-N-acetylmuramate-alanine ligase MurC {Haemophi 99.92
d1o5za2296 Folylpolyglutamate synthetase {Thermotoga maritima 99.92
d2gc6a2296 Folylpolyglutamate synthetase {Lactobacillus casei 99.91
d2jfga3204 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase 99.87
d1j6ua3207 UDP-N-acetylmuramate-alanine ligase MurC {Thermoto 99.85
d2gc6a1129 Folylpolyglutamate synthetase, C-terminal domain { 99.71
d2jfga2140 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase 99.7
d1j6ua2151 UDP-N-acetylmuramate-alanine ligase MurC {Thermoto 99.66
d1o5za1137 Folylpolyglutamate synthetase, C-terminal domain { 99.65
d1gg4a1135 UDP-murNac-tripeptide D-alanyl-D-alanine-adding en 99.53
d1p3da2152 UDP-N-acetylmuramate-alanine ligase MurC {Haemophi 99.51
>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.2e-29  Score=227.94  Aligned_cols=201  Identities=30%  Similarity=0.444  Sum_probs=168.4

Q ss_pred             CCCceEEEeccceEeCCceecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecccCCcccCCccccccCEEEEeCCCcchh
Q 041678            1 MGLRTGMLSSVSYYIHGDNKLESPRTTPDAVMVQNLMAKMLHNGTEAVVMEASSHGLALGRCSEVDFDIAVFTNLTRDHM   80 (402)
Q Consensus         1 ~g~~~g~~~t~g~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~d~~VlE~g~~g~~~d~~~~~~p~iaViTnI~~DHl   80 (402)
                      +|.++|++||+|..+++ .......+||.+.+....++.+...+++++++|+++.|....++..++|+++|||||++||+
T Consensus        30 ~g~~~~~~gt~g~~~~~-~~~~~~~~t~~~~~~~~~l~~~~~~~~~~~~le~ss~g~~~~~~~~~~p~i~vitNi~~dHl  108 (234)
T d1e8ca3          30 LGEISAVMGTVGNGLLG-KVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHL  108 (234)
T ss_dssp             TTCCEEEEETTEEEETT-CCBCCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTCBCSEEEECCCCSCCH
T ss_pred             CCCCeEEECccccCcCc-cccccccccccchhHHHHHHHHhhcCCceeeeccCccchhhhhhcccccceEEEeeccccch
Confidence            48899999999999875 45667789999999999999999999999999999887756678899999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHhhhcCCCCCceEEEeCCChHHHHHHhccCCCCCEEEEecc-C---CCCceEEeeEEeecCceEE
Q 041678           81 DFHGTEEEYRNAKAKLFSRMVDPERHRKVVNIDDPNATSFIAQGNPDVPVVTFAME-N---KKADVHPLKFELSLFETQV  156 (402)
Q Consensus        81 ~~~gt~e~i~~~K~~i~~~~~~~~~~~~iln~dd~~~~~~~~~~~~~~~v~~~~~~-~---~~~~~~~~~~~~~~~~~~~  156 (402)
                      |+|||+|+|+.+|++||+.   ...+.+|+|.||+....+.+... ....+.+... +   ...++......+...+..+
T Consensus       109 d~~~~~e~~~~~K~~i~~~---~~~~~~iin~Dd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (234)
T d1e8ca3         109 DYHGDMEHYEAAKWLLYSE---HHCGQAIINADDEVGRRWLAKLP-DAVAVSMEDHINPNCHGRWLKATEVNYHDSGATI  184 (234)
T ss_dssp             HHHSSHHHHHHHHHHHHHT---SBCCEEEEETTSHHHHHHHTTCT-TCEEEESSSCCCTTTCSEEEEEEEEEECSSCEEE
T ss_pred             hhhccccceehhhhccccc---cccceeEEecccccchhhhhhhc-cceeeeecccccccccccccccccccccccccee
Confidence            9999999999999999986   34578999999999998876542 2212222211 1   1123555666677778888


Q ss_pred             EEEcCCeeEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 041678          157 LVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDA  206 (402)
Q Consensus       157 ~~~~~~~~~~~~l~l~G~hn~~Na~aA~a~a~~lgi~~~~i~~~L~~~~~  206 (402)
                      .+...++.+++.++++|.||++|+++|+++|+.+|++++.|.++|++|+|
T Consensus       185 ~~~~~~~~~~i~~~l~G~hni~N~laAiava~~lGi~~~~i~~~l~~fkP  234 (234)
T d1e8ca3         185 RFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQP  234 (234)
T ss_dssp             EEEETTCCEEEEECSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHGGGCCC
T ss_pred             eeecCCceEEEEeCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhCCC
Confidence            88888888999999999999999999999999999999999999999975
>d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure