Citrus Sinensis ID: 041712

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
MMMSKRMMVFGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGGNPGCSPVHPELCKMEPGNPYHRGCENEAQCRGPGGQNNN
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHccccccEEcccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccccccccccccccccccccccccccccccHccccccccccc
Coil and Loop (DISEMBL)
MMMSKRMMVFGVIMVLTASIVMVVKDgaeakeigygaigaggnpgcspvhpelckmepgnpyhrgceneaqcrgpggqnnn
Flexible Loop (DISEMBL)
MMMSKRMMVFGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGGNPGCSPVHPELCKMEPGNPYHRGCEneaqcrgpggqnnn
Low Complexity Region (SEG)
MMMSKRMMVFGVIMVLTASIVMVVKDgaeakeigygaigaggNPGCSPVHPELCKMEPGNPYHRGCENEAQCRGPGGQNNN
Disordered region (IsUnstruct)
******MMVFGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGGNPGC***********************************
Disordered Region (DISOPRED)
**********GVIMVLTASIVMVVKDGAEAKEIGYGAIGAGGNPGCS**************YHRGCE**************
Disordered Region (DISEMBL)
MMMSKRMMVFGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGGNPGCSPVHPELCKMEPGNPYHRGCENEAQ**********
Disordered Region (DISPRO)
*MMSKRMMVFGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGGNPGCSPVHPELCKMEPGNPYHRGCENEAQC*********
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMMSKRMMVFGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGGNPGCSPVHPELCKMEPGNPYHRGCENEAQCRGPGGQNNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
A8MQL7	72	Protein RALF-like 20 OS=A	yes	no	0.876	0.986	0.405	4e-08
A8MR00	72	Protein RALF-like 36 OS=A	no	no	0.876	0.986	0.391	3e-06
Q9LDU1	85	Protein RALF-like 28 OS=A	no	no	0.839	0.8	0.424	5e-06
A8MQ92	97	Protein RALF-like 2 OS=Ar	no	no	0.827	0.690	0.408	7e-06
A8MRM1	95	Protein RALF-like 16 OS=A	no	no	0.753	0.642	0.387	3e-05
Q3ECL0	75	Protein RALF-like 9 OS=Ar	no	no	0.901	0.973	0.346	5e-05
A8MRD4	81	Protein RALF-like 7 OS=Ar	no	no	0.802	0.802	0.358	5e-05

>sp|A8MQL7|RLF20_ARATH Protein RALF-like 20 OS=Arabidopsis thaliana GN=RALFL20 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 1  MMMSKRMMVFGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGGNPGCSPVHPELCKMEPGN 60
          M++SK+ ++    +++  SIVM      EAK IG  A+      GC P  P  CKM+P N
Sbjct: 1  MVLSKKTIMQSFALMIILSIVM---STTEAKTIGNPAMREDEPKGCPPGSPASCKMQPAN 57

Query: 61 PYHRGCENEAQCRG 74
          PY  GCE   +CRG
Sbjct: 58 PYKPGCEASQRCRG 71

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.
Arabidopsis thaliana (taxid: 3702)

>sp|A8MR00|RLF36_ARATH Protein RALF-like 36 OS=Arabidopsis thaliana GN=At2g32885 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 1  MMMSKRMMVFGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGGNPGCSPVHPELCKMEPGN 60
          M +SK+ +V    +++  SIVM      EA  IG  A+      GC+P     CKM+P N
Sbjct: 1  MGISKKTVVQSFALIIIISIVM---STTEANSIGAPAMREDLPKGCAPGSSAGCKMQPAN 57

Query: 61 PYHRGCENEAQCRG 74
          PY  GCE   +CRG
Sbjct: 58 PYKPGCEASQRCRG 71

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LDU1|RLF28_ARATH Protein RALF-like 28 OS=Arabidopsis thaliana GN=RALFL28 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 4  SKRMMVFGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGG-NPGCSPVHPELCKMEPGNPY 62
          +KR MV  V M +    +    + A A EIGY  +G G   PGC   H      +P NPY
Sbjct: 7  TKRFMV--VAMFIACVFISNNMNVAVANEIGYPGMGRGDRQPGCD--HGNCPPDQPANPY 62

Query: 63 HRGCENEAQCRGP 75
          HRGCE   +CRGP
Sbjct: 63 HRGCEKSKRCRGP 75

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|A8MQ92|RLF2_ARATH Protein RALF-like 2 OS=Arabidopsis thaliana GN=RALFL2 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 2  MMSKRMMVFGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGGNPGCSPVHPELCKMEPGNP 61
          M ++ M+V   I++L+   + ++K  A+ K IGY AIG  G  GCSP  P  C  +P  P
Sbjct: 1  MEARHMLV--TILLLSFVFMNIMKVEAQ-KVIGYPAIGRDGARGCSPKDPS-CPQQPEKP 56

Query: 62 YHRGCENEAQC 72
          Y RGCE   +C
Sbjct: 57 YKRGCEKITRC 67

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|A8MRM1|RLF16_ARATH Protein RALF-like 16 OS=Arabidopsis thaliana GN=RALFL16 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 12 VIMVLTASIVMVVKDGA-EAKEIGYGAIGAGGNPGCSPVHPELCKMEPGNPYHRGCENEA 70
          V +  T  +VM +  G+ EA+ +GYG+I     P C   +P  C  +P N YHRGCE   
Sbjct: 10 VFLFATMMLVMFLFCGSGEARTLGYGSIKGDRIPACGYKNPNSCVKQPVNHYHRGCEKIT 69

Query: 71 QC 72
          +C
Sbjct: 70 RC 71

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3ECL0|RLF9_ARATH Protein RALF-like 9 OS=Arabidopsis thaliana GN=RALFL9 PE=3 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 1  MMMSKRMMVFGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGGNP-GCSPVHPELCKMEPG 59
          M MSK + V  + + L   + +        + I Y AI  G +   C   HP  CK +  
Sbjct: 1  MGMSKSIKVI-LSLALVVFLALAATKVEATRYITYPAIDRGDHAVHCDKAHPNTCKKKEA 59

Query: 60 NPYHRGCENEAQCRG 74
          NPY RGCE   +CRG
Sbjct: 60 NPYQRGCEKINRCRG 74

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|A8MRD4|RLF7_ARATH Protein RALF-like 7 OS=Arabidopsis thaliana GN=RALFL7 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 6  RMMVFGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGGNPGCSPVHPELCKMEPGNPYHRG 65
          R+ VF V +++  S+V    +G   K+I Y  +     PGC+  +P+ C   P N YHRG
Sbjct: 8  RIHVFFVSIMIIISLVSGFGEGI--KQINYKDLIKDTIPGCTSKNPKECVKVPANTYHRG 65

Query: 66 CENEAQC 72
          CE   +C
Sbjct: 66 CEISTRC 72

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
224127154	99	predicted protein [Populus trichocarpa]	0.913	0.747	0.419	2e-08
255564952	72	conserved hypothetical protein [Ricinus	0.888	1.0	0.426	1e-06
297823271	72	hypothetical protein ARALYDRAFT_902570 [	0.876	0.986	0.405	2e-06
145330356	72	RALF-like 20 protein [Arabidopsis thalia	0.876	0.986	0.405	2e-06
297823077	72	hypothetical protein ARALYDRAFT_902354 [	0.876	0.986	0.418	3e-06
224143419	77	predicted protein [Populus trichocarpa]	0.925	0.974	0.378	2e-05
297845366	103	hypothetical protein ARALYDRAFT_472570 [	0.777	0.611	0.454	2e-05
224105763	72	predicted protein [Populus trichocarpa]	0.864	0.972	0.373	8e-05
255564954	79	conserved hypothetical protein [Ricinus	0.888	0.911	0.373	0.0001
145330346	72	Rapid alkalinization factor (RALF) famil	0.876	0.986	0.391	0.0001

>gi|224127154|ref|XP_002329413.1| predicted protein [Populus trichocarpa] gi|222870463|gb|EEF07594.1| predicted protein [Populus trichocarpa]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 7/81 (8%)

Query: 3  MSKRMMVFGVIMVL-------TASIVMVVKDGAEAKEIGYGAIGAGGNPGCSPVHPELCK 55
          MSK +MVFG+ +++        A +  V  +   +  IGYGAIG GGN  C P +P+ C 
Sbjct: 1  MSKTLMVFGLAVMVGCACFAEAAGVPTVADNKTPSPVIGYGAIGRGGNHECGPKNPKACN 60

Query: 56 MEPGNPYHRGCENEAQCRGPG 76
            P NPY+RGCE E  C   G
Sbjct: 61 DVPANPYYRGCEKEDHCHNGG 81

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564952|ref|XP_002523469.1| conserved hypothetical protein [Ricinus communis] gi|223537297|gb|EEF38928.1| conserved hypothetical protein [Ricinus communis]

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 1  MMMSKRMMVFGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGGNPGCSPVHPELCKMEPGN 60
          M +SK++ VF + M+L  S+V+ V   A    IG GA+      GC P + + CK   GN
Sbjct: 1  MAISKKLTVFCLGMLLCMSLVVRVSSSAA---IGNGAMKGDDGSGCGPENRQGCKEGQGN 57

Query: 61 PYHRGCENEAQCRGP 75
          PY RGCE    CRGP
Sbjct: 58 PYSRGCEKGQDCRGP 72

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823271|ref|XP_002879518.1| hypothetical protein ARALYDRAFT_902570 [Arabidopsis lyrata subsp. lyrata] gi|297325357|gb|EFH55777.1| hypothetical protein ARALYDRAFT_902570 [Arabidopsis lyrata subsp. lyrata]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 1  MMMSKRMMVFGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGGNPGCSPVHPELCKMEPGN 60
          M++SK+ ++    +++  SIVM      EAK IG  A+      GC+P  P  CKM+P N
Sbjct: 1  MVISKKTIMQSFALIIIISIVM---STTEAKTIGNPAMREDEPKGCAPGSPSGCKMQPAN 57

Query: 61 PYHRGCENEAQCRG 74
          PY  GCE   +CRG
Sbjct: 58 PYKPGCEASQRCRG 71

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145330356|ref|NP_001078003.1| RALF-like 20 protein [Arabidopsis thaliana] gi|426020484|sp|A8MQL7.1|RLF20_ARATH RecName: Full=Protein RALF-like 20; Flags: Precursor gi|330253932|gb|AEC09026.1| RALF-like 20 protein [Arabidopsis thaliana]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 1  MMMSKRMMVFGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGGNPGCSPVHPELCKMEPGN 60
          M++SK+ ++    +++  SIVM      EAK IG  A+      GC P  P  CKM+P N
Sbjct: 1  MVLSKKTIMQSFALMIILSIVM---STTEAKTIGNPAMREDEPKGCPPGSPASCKMQPAN 57

Query: 61 PYHRGCENEAQCRG 74
          PY  GCE   +CRG
Sbjct: 58 PYKPGCEASQRCRG 71

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823077|ref|XP_002879421.1| hypothetical protein ARALYDRAFT_902354 [Arabidopsis lyrata subsp. lyrata] gi|297325260|gb|EFH55680.1| hypothetical protein ARALYDRAFT_902354 [Arabidopsis lyrata subsp. lyrata]

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 1  MMMSKRMMVFGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGGNPGCSPVHPELCKMEPGN 60
          M++SK+ +V  +  ++  SIVM      EAK IG  A+      GC P  P  CKM+P N
Sbjct: 1  MVISKKTIVQSLAFMIIISIVM---STTEAKSIGVPAMREDLPKGCGPGSPPGCKMQPAN 57

Query: 61 PYHRGCENEAQCRG 74
          PY  GCE   +CRG
Sbjct: 58 PYKPGCEASQRCRG 71

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143419|ref|XP_002324950.1| predicted protein [Populus trichocarpa] gi|222866384|gb|EEF03515.1| predicted protein [Populus trichocarpa]

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 7/82 (8%)

Query: 1  MMMSKRMMVFGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGGN-PGCSPVHPELCKMEPG 59
          M  S ++M  G+ M++  +  +   +    ++I YGAI  G + P C P HP  C   P 
Sbjct: 1  MSPSNKLMALGLCMLMACT--LFAGNAEATRDINYGAIVKGDHEPFCGPTHP--CVKTPA 56

Query: 60 NPYHRGCENEAQCRGPGGQNNN 81
          N YHRGCE   +CR  GG+N+N
Sbjct: 57 NGYHRGCETINKCR--GGRNDN 76

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845366|ref|XP_002890564.1| hypothetical protein ARALYDRAFT_472570 [Arabidopsis lyrata subsp. lyrata] gi|297336406|gb|EFH66823.1| hypothetical protein ARALYDRAFT_472570 [Arabidopsis lyrata subsp. lyrata]

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 13 IMVLTASIVMVVKDGAEAKEIGYGAIGAGGNPGCSPVHPEL-CK-MEPGNPYHRGCENEA 70
          I+VL+   + ++K  A+ KEIGY AIG  G  GCSP +P + C+  +P NPY RGCE   
Sbjct: 11 ILVLSCVFMNIMKVEAQ-KEIGYPAIGRDGAHGCSPKYPSVPCRPKQPENPYKRGCEKIT 69

Query: 71 QCRGPG 76
          +C+  G
Sbjct: 70 RCKRDG 75

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105763|ref|XP_002333770.1| predicted protein [Populus trichocarpa] gi|222838442|gb|EEE76807.1| predicted protein [Populus trichocarpa]

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 1  MMMSKRMMVFGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGGN-PGCSPVHPELCKMEPG 59
          M  S ++M  G+ M++  +  +   +    ++I YGAI  G + P C P HP  C   P 
Sbjct: 1  MSPSNKLMALGLCMLMACT--LFAGNAEATRDINYGAIVKGDHEPFCGPTHP--CVKTPA 56

Query: 60 NPYHRGCENEAQCRG 74
          N YHRGCE   +CRG
Sbjct: 57 NGYHRGCETINKCRG 71

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564954|ref|XP_002523470.1| conserved hypothetical protein [Ricinus communis] gi|223537298|gb|EEF38929.1| conserved hypothetical protein [Ricinus communis]

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 1  MMMSKRMMVFGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGGNPGCSPVHPELCKMEPGN 60
          M + +++ VF + M+L  S++   +D A A  +G GA+    +P C P  P+ CK    N
Sbjct: 2  MAIPEKLTVFCLGMLLCMSLL--ARD-ANATTLGNGAMEGDHDPACGPESPQGCKKGQAN 58

Query: 61 PYHRGCENEAQCRGP 75
           Y RGCE   +CRGP
Sbjct: 59 KYSRGCEKGEECRGP 73

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145330346|ref|NP_001077998.1| Rapid alkalinization factor (RALF) family protein [Arabidopsis thaliana] gi|426020643|sp|A8MR00.1|RLF36_ARATH RecName: Full=Protein RALF-like 36; Flags: Precursor gi|330253663|gb|AEC08757.1| Rapid alkalinization factor (RALF) family protein [Arabidopsis thaliana]

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 1  MMMSKRMMVFGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGGNPGCSPVHPELCKMEPGN 60
          M +SK+ +V    +++  SIVM      EA  IG  A+      GC+P     CKM+P N
Sbjct: 1  MGISKKTVVQSFALIIIISIVM---STTEANSIGAPAMREDLPKGCAPGSSAGCKMQPAN 57

Query: 61 PYHRGCENEAQCRG 74
          PY  GCE   +CRG
Sbjct: 58 PYKPGCEASQRCRG 71

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
TAIR|locus:4010713678	72	RALFL20 "RALF-like 20" [Arabid	0.876	0.986	0.324	1.3e-06
TAIR|locus:4010713671	72	AT2G32885 [Arabidopsis thalian	0.876	0.986	0.324	7e-06
TAIR|locus:2123091	85	RALFL28 "ralf-like 28" [Arabid	0.370	0.352	0.531	3e-05
TAIR|locus:505006196	75	RALFL9 "ralf-like 9" [Arabidop	0.358	0.386	0.517	5e-05
TAIR|locus:4010713569	81	RALFL7 "RALF-like 7" [Arabidop	0.358	0.358	0.482	0.00027
TAIR|locus:4010713645	79	RALFL15 "RALF-like 15" [Arabid	0.407	0.417	0.424	0.00057

TAIR|locus:4010713678 RALFL20 "RALF-like 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 24/74 (32%), Positives = 35/74 (47%)

Query:     1 MMMSKRMMVFGVIMVLTASIVMVVKDXXXXXXXXXXXXXXXXNPGCSPVHPELCKMEPGN 60
             M++SK+ ++    +++  SIVM   +                  GC P  P  CKM+P N
Sbjct:     1 MVLSKKTIMQSFALMIILSIVMSTTEAKTIGNPAMREDEPK---GCPPGSPASCKMQPAN 57

Query:    61 PYHRGCENEAQCRG 74
             PY  GCE   +CRG
Sbjct:    58 PYKPGCEASQRCRG 71

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:4010713671 AT2G32885 [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 24/74 (32%), Positives = 34/74 (45%)

Query:     1 MMMSKRMMVFGVIMVLTASIVMVVKDXXXXXXXXXXXXXXXXNPGCSPVHPELCKMEPGN 60
             M +SK+ +V    +++  SIVM   +                  GC+P     CKM+P N
Sbjct:     1 MGISKKTVVQSFALIIIISIVMSTTEANSIGAPAMREDLPK---GCAPGSSAGCKMQPAN 57

Query:    61 PYHRGCENEAQCRG 74
             PY  GCE   +CRG
Sbjct:    58 PYKPGCEASQRCRG 71

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2123091 RALFL28 "ralf-like 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 17/32 (53%), Positives = 19/32 (59%)

Query:    44 PGCSPVHPELCKMEPGNPYHRGCENEAQCRGP 75
             PGC   H      +P NPYHRGCE   +CRGP
Sbjct:    46 PGCD--HGNCPPDQPANPYHRGCEKSKRCRGP 75

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:505006196 RALFL9 "ralf-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query:    46 CSPVHPELCKMEPGNPYHRGCENEAQCRG 74
             C   HP  CK +  NPY RGCE   +CRG
Sbjct:    46 CDKAHPNTCKKKEANPYQRGCEKINRCRG 74

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:4010713569 RALFL7 "RALF-like 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query:    44 PGCSPVHPELCKMEPGNPYHRGCENEAQC 72
             PGC+  +P+ C   P N YHRGCE   +C
Sbjct:    44 PGCTSKNPKECVKVPANTYHRGCEISTRC 72

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:4010713645 RALFL15 "RALF-like 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query:    46 CSPVHPELCKMEPGNPYHRGCENEAQCRGPGGQ 78
             C   HP  CK +  NPY RGC    +CR   G+
Sbjct:    46 CDKAHPNTCKKQVANPYRRGCGTIERCRRDTGR 78


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       81        65   0.00091  102 3  11 22  0.42    28
                                                     29  0.46    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  472 (50 KB)
  Total size of DFA:  92 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.81u 0.11s 6.92t   Elapsed:  00:00:00
  Total cpu time:  6.81u 0.11s 6.92t   Elapsed:  00:00:00
  Start:  Sat May 11 01:50:22 2013   End:  Sat May 11 01:50:22 2013

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A8MQL7	RLF20_ARATH	No assigned EC number	0.4054	0.8765	0.9861	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	81
pfam05498	66	pfam05498, RALF, Rapid ALkalinization Factor (RALF	6e-05

>gnl|CDD|218610 pfam05498, RALF, Rapid ALkalinization Factor (RALF)

 Score = 37.0 bits (86), Expect = 6e-05
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 28 AEAKEIGYGAIGAGGNP----GCSPVHPELCKMEPGNPYHRGCENEAQCRG 74
          A  + I YGA+     P    G S          P NPY RGC    +CR 
Sbjct: 18 AARRYISYGALRRNSVPCSRRGASY--YNCKPGAPANPYSRGCSAITRCRR 66

RALF, a 5-kDa ubiquitous polypeptide in plants, arrests root growth and development. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
PF05498	66	RALF: Rapid ALkalinization Factor (RALF) ; InterPr	99.83
PLN03222	119	rapid alkalinization factor 23-like protein; Provi	99.78
PLN03221	137	rapid alkalinization factor 23; Provisional	99.78
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	95.35

>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development

Probab=99.83  E-value=6e-21  Score=118.34  Aligned_cols=45  Identities=40%  Similarity=0.854  Sum_probs=38.7

Q ss_pred             ccceeccCCCCCCCCCCCCCCC-C-CCC-CCCCCCCCCCCCCccccccC
Q 041712           29 EAKEIGYGAIGAGGNPGCSPVH-P-ELC-KMEPGNPYHRGCENEAQCRG   74 (81)
Q Consensus        29 ~~~yIsYgal~~d~~pgC~~~~-~-~~C-~~~paNpY~RGC~~itrCr~   74 (81)
                      .++||+||||++|.+| |.+.+ + ++| +++|||||+|||++||||||
T Consensus        19 ~~~yIsYgaL~~~~~p-c~~~g~~~~~c~~~~paNpY~RGC~~~~rCrr   66 (66)
T PF05498_consen   19 ARRYISYGALRRDRVP-CSPRGCSYYNCCPRQPANPYSRGCSKITRCRR   66 (66)
T ss_pred             cCCeecchhccCCCCC-CCcccCCCcccCCCCCCCCCCCCCCccccCCC
Confidence            3499999999999999 65544 3 466 89999999999999999996

>PLN03222 rapid alkalinization factor 23-like protein; Provisional

Probab=99.78  E-value=5.2e-20  Score=125.12  Aligned_cols=44  Identities=39%  Similarity=0.728  Sum_probs=40.3

Q ss_pred             cceeccCCCCCCCCCCCCCCC--CCCCC-CCCCCCCCCCCCccccccC
Q 041712           30 AKEIGYGAIGAGGNPGCSPVH--PELCK-MEPGNPYHRGCENEAQCRG   74 (81)
Q Consensus        30 ~~yIsYgal~~d~~pgC~~~~--~~~C~-~~paNpY~RGC~~itrCr~   74 (81)
                      .+||||+||++|++| |++++  .++|. ++|||||+|||++||||||
T Consensus        73 ~rYISYgALrrd~vP-CsrrG~SYynC~~~~~ANPY~RGCs~ITrCrR  119 (119)
T PLN03222         73 TKYISYGALRRNTVP-CSRRGASYYNCRRGAQANPYSRGCSAITRCRR  119 (119)
T ss_pred             cCeecHHHhcCCCCC-CCCCCCCccccCCCCCCCCCCCCchhhccccC
Confidence            699999999999999 99874  57995 5899999999999999996

>PLN03221 rapid alkalinization factor 23; Provisional

Probab=99.78  E-value=8.8e-20  Score=126.34  Aligned_cols=44  Identities=36%  Similarity=0.711  Sum_probs=40.1

Q ss_pred             cceeccCCCCCCCCCCCCCCC--CCCCC-CCCCCCCCCCCCccccccC
Q 041712           30 AKEIGYGAIGAGGNPGCSPVH--PELCK-MEPGNPYHRGCENEAQCRG   74 (81)
Q Consensus        30 ~~yIsYgal~~d~~pgC~~~~--~~~C~-~~paNpY~RGC~~itrCr~   74 (81)
                      ++||||+||++|++| |++++  .++|. ++|||||+|||++||||||
T Consensus        91 ~rYISYgALrrd~vP-CsrrG~SYynC~~~~pANPY~RGCs~ITRCrR  137 (137)
T PLN03221         91 RRYISYGALRRNTIP-CSRRGASYYNCRRGAQANPYSRGCSAITRCRR  137 (137)
T ss_pred             CCccCHHHhccCCCC-CCCCCCCccccCCCCCCCCCCCCcccccccCC
Confidence            689999999999999 99875  47995 5899999999999999996

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=95.35  E-value=0.016  Score=37.93  Aligned_cols=13  Identities=31%  Similarity=0.784  Sum_probs=9.9

Q ss_pred             CCcchhHHHHHHHH
Q 041712            1 MMMSKRMMVFGVIM   14 (81)
Q Consensus         1 M~msk~~~v~~l~l   14 (81)
                      |+ ||.++++.|+|
T Consensus         1 Ma-SK~~llL~l~L   13 (95)
T PF07172_consen    1 MA-SKAFLLLGLLL   13 (95)
T ss_pred             Cc-hhHHHHHHHHH
Confidence            88 99988876543

Some of them may be involved in resistance to environmental stress [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00