Citrus Sinensis ID: 042017

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRLNYA
cccccccccccccHHHHHHHHHHccHHHHcccccccccccccccccccccccccccccccEEEccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHccc
ccccccEccccccHHHHHHHHcccccEEEEEEcccccHHHHHHcccEEEEcccccEccccEccccccccEEEEEEccHHHHHHHHHHHEccccccHHHcccccccccccHHHHHcccccccEEEEEcHHHHccccccHHHHHHHHHHHHHHHHccc
npyvlsadpcgsssgsAISVAANLAAVSlgtetdgsilcpsssnsvvglkptlgltsragvipitprqdsvgpicrTVADAAYVLDAiagfdhydpatraaseyiprggykqflrphglkgkrlgivrnpffnfdegsplaqvfDHHLHTLRLNYA
npyvlsadpcgssSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLgltsragvipitprqdsvgpICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRLNYA
NPYVLSADPCgsssgsaisvaaNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRLNYA
*******************VAANLAAVSLGTETDGSILCP***NSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRL***
NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRLNYA
**************GSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRLNYA
*PYVLSADPCGSS********ANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRLNY*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRLNYA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query156 2.2.26 [Sep-21-2011]
Q9URY4 583 Putative amidase C869.01 yes no 0.801 0.214 0.535 4e-22
A7GIK2 485 Glutamyl-tRNA(Gln) amidot yes no 0.807 0.259 0.458 3e-20
C1FLD9 485 Glutamyl-tRNA(Gln) amidot yes no 0.807 0.259 0.442 2e-19
C3KU97 485 Glutamyl-tRNA(Gln) amidot yes no 0.807 0.259 0.442 2e-19
C1D1L2 487 Glutamyl-tRNA(Gln) amidot yes no 0.801 0.256 0.412 3e-19
A5I6Z3 485 Glutamyl-tRNA(Gln) amidot yes no 0.807 0.259 0.442 3e-19
A7FYL3 485 Glutamyl-tRNA(Gln) amidot yes no 0.807 0.259 0.442 3e-19
B1INF7 485 Glutamyl-tRNA(Gln) amidot yes no 0.807 0.259 0.442 3e-19
B1L1G9 485 Glutamyl-tRNA(Gln) amidot yes no 0.807 0.259 0.435 5e-19
Q3A2K0 485 Glutamyl-tRNA(Gln) amidot yes no 0.923 0.296 0.428 6e-19
>sp|Q9URY4|YI01_SCHPO Putative amidase C869.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869.01 PE=3 SV=1 Back     alignment and function desciption
 Score =  103 bits (258), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 68/127 (53%), Positives = 85/127 (66%), Gaps = 2/127 (1%)

Query: 2   PYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGV 61
           P+ L+ +P GSSSGSAISVA+N+ A +LGTETDGSI+ P+  N VVGLKPT+GLTSR GV
Sbjct: 212 PFNLTVNPGGSSSGSAISVASNMIAFALGTETDGSIIDPAMRNGVVGLKPTVGLTSRYGV 271

Query: 62  IPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPR-GGYKQFL-RPHGL 119
           IP +  QD+ GPI RTV DA YV  ++ G D  D  T   +   P  G Y +FL     L
Sbjct: 272 IPESEHQDTTGPIARTVRDAVYVFQSMWGIDENDIYTLNQTGKTPEDGDYMKFLSNKTSL 331

Query: 120 KGKRLGI 126
           +G R G+
Sbjct: 332 EGARFGL 338

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 4
>sp|A7GIK2|GATA_CLOBL Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|C1FLD9|GATA_CLOBJ Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Kyoto / Type A2) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|C3KU97|GATA_CLOB6 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain 657 / Type Ba4) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|C1D1L2|GATA_DEIDV Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|A5I6Z3|GATA_CLOBH Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|A7FYL3|GATA_CLOB1 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B1INF7|GATA_CLOBK Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Okra / Type B1) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B1L1G9|GATA_CLOBM Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q3A2K0|GATA_PELCD Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=gatA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query156
297744647 988 unnamed protein product [Vitis vinifera] 0.967 0.152 0.802 1e-66
359475039 509 PREDICTED: putative amidase C869.01-like 0.974 0.298 0.802 3e-66
225427948 515 PREDICTED: putative amidase C869.01-like 0.974 0.295 0.802 3e-66
297744646 433 unnamed protein product [Vitis vinifera] 0.974 0.351 0.809 4e-66
297744643 514 unnamed protein product [Vitis vinifera] 0.974 0.295 0.771 1e-63
359474857 514 PREDICTED: putative amidase C869.01-like 0.974 0.295 0.771 4e-63
147861793 514 hypothetical protein VITISV_016638 [Viti 0.974 0.295 0.771 5e-63
297744644 390 unnamed protein product [Vitis vinifera] 0.974 0.389 0.782 4e-62
224078151 510 predicted protein [Populus trichocarpa] 0.967 0.296 0.763 2e-61
147861789 507 hypothetical protein VITISV_016634 [Viti 0.948 0.291 0.776 2e-61
>gi|297744647|emb|CBI37909.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 122/152 (80%), Positives = 135/152 (88%)

Query: 1   NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
           NPYVLSA PCGSSSGSAISVAANLAAVSLGTETDGSILCPS  NSVVG+KPTLGLTSRAG
Sbjct: 658 NPYVLSATPCGSSSGSAISVAANLAAVSLGTETDGSILCPSHVNSVVGIKPTLGLTSRAG 717

Query: 61  VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLK 120
           V+PI+PRQD+VGPICRTV+DA  VLD I GFD+ D ATR +S+YIP+GGYKQFL  +GLK
Sbjct: 718 VVPISPRQDTVGPICRTVSDAVEVLDVIVGFDYRDEATRTSSKYIPQGGYKQFLNANGLK 777

Query: 121 GKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLR 152
           GKRLGIVRNPF+ F+ GS L QVF+HH HTLR
Sbjct: 778 GKRLGIVRNPFYMFENGSVLPQVFEHHFHTLR 809

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359475039|ref|XP_003631572.1| PREDICTED: putative amidase C869.01-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225427948|ref|XP_002276506.1| PREDICTED: putative amidase C869.01-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744646|emb|CBI37908.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744643|emb|CBI37905.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359474857|ref|XP_002277463.2| PREDICTED: putative amidase C869.01-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147861793|emb|CAN80909.1| hypothetical protein VITISV_016638 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744644|emb|CBI37906.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224078151|ref|XP_002305495.1| predicted protein [Populus trichocarpa] gi|222848459|gb|EEE86006.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147861789|emb|CAN80905.1| hypothetical protein VITISV_016634 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query156
TAIR|locus:2116890 466 AT4G34880 "AT4G34880" [Arabido 0.647 0.216 0.612 1.1e-30
UNIPROTKB|G4MQU3 555 MGG_04756 "Glutamyl-tRNA(Gln) 0.852 0.239 0.477 1.7e-22
UNIPROTKB|Q81RH4 491 BAS1925 "Amidase family protei 0.967 0.307 0.397 3.1e-22
TIGR_CMR|BA_2072 491 BA_2072 "amidase family protei 0.967 0.307 0.397 3.1e-22
POMBASE|SPAC869.01 583 SPAC869.01 "amidase (predicted 0.801 0.214 0.448 3.9e-21
UNIPROTKB|Q0C2V5 506 HNE_1220 "Amidase family prote 0.724 0.223 0.398 3.1e-19
UNIPROTKB|G4MP85 559 MGG_02188 "Glutamyl-tRNA(Gln) 0.871 0.243 0.402 8.5e-19
UNIPROTKB|Q81RW6 536 BAS1782 "Amidase family protei 0.807 0.235 0.382 2.1e-18
TIGR_CMR|BA_1921 536 BA_1921 "amidase family protei 0.807 0.235 0.382 2.1e-18
TIGR_CMR|CHY_1102 485 CHY_1102 "glutamyl-tRNA(Gln) a 0.846 0.272 0.376 2.4e-15
TAIR|locus:2116890 AT4G34880 "AT4G34880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 68/111 (61%), Positives = 83/111 (74%)

Query:    42 SSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAA 101
             S NSVVG+KP++GLTSRAGV+PI+ RQDS+GPICRTV+DA ++LDAI G+D  D AT+ A
Sbjct:   182 SQNSVVGIKPSVGLTSRAGVVPISLRQDSIGPICRTVSDAVHLLDAIVGYDPLDEATKTA 241

Query:   102 SEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLR 152
             SE+IP GGYKQFL   GLKGKRLGIV             + + DHH+ TLR
Sbjct:   242 SEFIPEGGYKQFLTTSGLKGKRLGIVMKH----------SSLLDHHIKTLR 282
GO:0004040 "amidase activity" evidence=ISS
GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA
UNIPROTKB|G4MQU3 MGG_04756 "Glutamyl-tRNA(Gln) amidotransferase subunit A" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q81RH4 BAS1925 "Amidase family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2072 BA_2072 "amidase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
POMBASE|SPAC869.01 SPAC869.01 "amidase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q0C2V5 HNE_1220 "Amidase family protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
UNIPROTKB|G4MP85 MGG_02188 "Glutamyl-tRNA(Gln) amidotransferase subunit A" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q81RW6 BAS1782 "Amidase family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1921 BA_1921 "amidase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1102 CHY_1102 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query156
PRK08137 497 PRK08137, PRK08137, amidase; Provisional 5e-54
PRK06828 491 PRK06828, PRK06828, amidase; Provisional 1e-50
COG0154 475 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf 7e-41
PRK06707 536 PRK06707, PRK06707, amidase; Provisional 1e-38
pfam01425 431 pfam01425, Amidase, Amidase 2e-38
PRK00012 459 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf 1e-34
TIGR00132 460 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a 2e-31
PRK11910 615 PRK11910, PRK11910, amidase; Provisional 2e-25
PRK07235 502 PRK07235, PRK07235, amidase; Provisional 4e-25
PRK07488 472 PRK07488, PRK07488, indole acetimide hydrolase; Va 3e-24
PRK08186 600 PRK08186, PRK08186, allophanate hydrolase; Provisi 1e-22
PRK07056 454 PRK07056, PRK07056, amidase; Provisional 1e-22
TIGR02713 561 TIGR02713, allophanate_hyd, allophanate hydrolase 2e-21
PRK06102 452 PRK06102, PRK06102, hypothetical protein; Provisio 3e-21
PRK09201 465 PRK09201, PRK09201, amidase; Provisional 2e-20
TIGR02715 452 TIGR02715, amido_AtzE, amidohydrolase, AtzE family 2e-19
PRK05962 424 PRK05962, PRK05962, amidase; Validated 1e-18
PRK06169 466 PRK06169, PRK06169, putative amidase; Provisional 2e-18
PRK08310 395 PRK08310, PRK08310, amidase; Provisional 4e-14
PRK07042 464 PRK07042, PRK07042, amidase; Provisional 6e-14
PRK06061 483 PRK06061, PRK06061, amidase; Provisional 8e-14
PRK06170 490 PRK06170, PRK06170, amidase; Provisional 1e-13
PLN02722 422 PLN02722, PLN02722, indole-3-acetamide amidohydrol 1e-13
PRK06565 566 PRK06565, PRK06565, amidase; Validated 5e-13
PRK07487 469 PRK07487, PRK07487, amidase; Provisional 7e-13
PRK12470 462 PRK12470, PRK12470, amidase; Provisional 1e-12
PRK07486 484 PRK07486, PRK07486, amidase; Provisional 1e-12
PRK07139 439 PRK07139, PRK07139, amidase; Provisional 5e-10
PRK07869 468 PRK07869, PRK07869, amidase; Provisional 2e-06
PRK06529 482 PRK06529, PRK06529, amidase; Provisional 1e-04
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional Back     alignment and domain information 
 Score =  177 bits (450), Expect = 5e-54
 Identities = 79/152 (51%), Positives = 97/152 (63%), Gaps = 5/152 (3%)

Query: 1   NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
           NPY L   PCGSSSGS  +VAA LAAV++GTETDGSI CP++ N +VGLKPT+GL SR G
Sbjct: 151 NPYALDRSPCGSSSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDG 210

Query: 61  VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLK 120
           ++PI+  QD+ GP+ RTVADAA VL AIAG D  DPAT +A        Y   L    L+
Sbjct: 211 IVPISHSQDTAGPMTRTVADAAAVLTAIAGGDPADPATASAPAPAVD--YVAALDADALR 268

Query: 121 GKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLR 152
           G RLG+ RN      E   +   F+  L  L+
Sbjct: 269 GARLGVARNYLGYHPE---VDAQFERALAELK 297

Length = 497
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional Back     alignment and domain information
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional Back     alignment and domain information
>gnl|CDD|216494 pfam01425, Amidase, Amidase Back     alignment and domain information
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit Back     alignment and domain information
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated Back     alignment and domain information
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional Back     alignment and domain information
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase Back     alignment and domain information
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional Back     alignment and domain information
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family Back     alignment and domain information
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated Back     alignment and domain information
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional Back     alignment and domain information
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional Back     alignment and domain information
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase Back     alignment and domain information
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated Back     alignment and domain information
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional Back     alignment and domain information
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional Back     alignment and domain information
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 156
COG0154 475 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su 100.0
PRK07235 502 amidase; Provisional 100.0
PRK00012 459 gatA aspartyl/glutamyl-tRNA amidotransferase subun 100.0
PF01425 441 Amidase: Amidase; InterPro: IPR000120 Amidase sign 100.0
TIGR00132 460 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) 100.0
PRK08137 497 amidase; Provisional 100.0
PRK07486 484 amidase; Provisional 100.0
PRK06169 466 putative amidase; Provisional 100.0
TIGR02715 452 amido_AtzE amidohydrolase, AtzE family. Members of 100.0
PRK06170 490 amidase; Provisional 100.0
PRK09201 465 amidase; Provisional 100.0
PRK05962 424 amidase; Validated 100.0
PRK06828 491 amidase; Provisional 100.0
PRK07487 469 amidase; Provisional 100.0
PRK06061 483 amidase; Provisional 100.0
PRK07488 472 indole acetimide hydrolase; Validated 100.0
PRK07056 454 amidase; Provisional 100.0
PRK08186 600 allophanate hydrolase; Provisional 100.0
PRK12470 462 amidase; Provisional 100.0
PRK06102 452 hypothetical protein; Provisional 100.0
PRK06707 536 amidase; Provisional 100.0
PRK07139 439 amidase; Provisional 100.0
PRK07042 464 amidase; Provisional 100.0
TIGR02713 561 allophanate_hyd allophanate hydrolase. Allophanate 100.0
PRK07869 468 amidase; Provisional 100.0
PRK06529 482 amidase; Provisional 100.0
PRK11910 615 amidase; Provisional 100.0
PRK06565 566 amidase; Validated 100.0
PRK08310 395 amidase; Provisional 100.0
PLN02722 422 indole-3-acetamide amidohydrolase 100.0
KOG1211 506 consensus Amidases [Translation, ribosomal structu 100.0
KOG1212 560 consensus Amidases [Translation, ribosomal structu 100.0
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-49  Score=329.47  Aligned_cols=149  Identities=39%  Similarity=0.549  Sum_probs=131.9

Q ss_pred             CCCCCCCCCCCCChHHHHHHhcCCCceeeeccCCCccchhhhcCCcceecCCCCCccCCCCCCCCCCCcccccccCCHHH
Q 042017            1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVAD   80 (156)
Q Consensus         1 Np~~~~~~~gGSS~Gsaaava~g~~~~aiGtD~gGSiR~PA~~~Gv~g~kpt~g~~s~~G~~~~~~~~d~~Gplar~v~D   80 (156)
                      ||||++|+|||||||||++||+|+++|++|||||||||+||+||||||||||+||||++|++++++++||+|||||||+|
T Consensus       146 NP~~~~~~pGGSSgGSAaAVAag~~~~alGSDtGGSIR~PAa~cGvvGlKPT~Grvsr~g~~~~a~sld~~GplartV~D  225 (475)
T COG0154         146 NPWNLERVPGGSSGGSAAAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRD  225 (475)
T ss_pred             CCCCCCCCCCcCchHHHHHHHhCCcchhcccCCCCchhhhhhhhCceeeCCCCCccCCCCCccccCCcCccCcccCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCc-ccccccccCCCCcccccccCCCCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 042017           81 AAYVLDAIAGFDHYDP-ATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRLNYA  156 (156)
Q Consensus        81 ~~~~~~~l~g~d~~d~-~s~~~~~~~p~~~~~~~~~~~~l~~lrIg~~~~~~~~~~~~~~v~~~~~~ai~~L~~~Ga  156 (156)
                      +++++++|.|+|+.|. ....    .+..+  .. ....++++|||++++.....+.+++++++|+++++.|+++|+
T Consensus       226 ~a~l~~v~~g~D~~d~~~~~~----~~~~~--~~-~~~~~~~lrigv~~~~~~~~~~~~~v~~~~~~a~~~l~~~Ga  295 (475)
T COG0154         226 AALLLDVIAGPDPRDSPLPPP----PPVPP--AL-AGKDLKGLRIGVPKELGGGGPLDPDVRAAFEAAVKALEAAGA  295 (475)
T ss_pred             HHHHHHHHcCCCCcccccccc----cCccc--hh-hccCCCCcEEEEECcccccCCCcHHHHHHHHHHHHHHHHCCC
Confidence            9999999999999984 2111    11111  12 235678899999988666456788999999999999999996

>PRK07235 amidase; Provisional Back     alignment and domain information
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence Back     alignment and domain information
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit Back     alignment and domain information
>PRK08137 amidase; Provisional Back     alignment and domain information
>PRK07486 amidase; Provisional Back     alignment and domain information
>PRK06169 putative amidase; Provisional Back     alignment and domain information
>TIGR02715 amido_AtzE amidohydrolase, AtzE family Back     alignment and domain information
>PRK06170 amidase; Provisional Back     alignment and domain information
>PRK09201 amidase; Provisional Back     alignment and domain information
>PRK05962 amidase; Validated Back     alignment and domain information
>PRK06828 amidase; Provisional Back     alignment and domain information
>PRK07487 amidase; Provisional Back     alignment and domain information
>PRK06061 amidase; Provisional Back     alignment and domain information
>PRK07488 indole acetimide hydrolase; Validated Back     alignment and domain information
>PRK07056 amidase; Provisional Back     alignment and domain information
>PRK08186 allophanate hydrolase; Provisional Back     alignment and domain information
>PRK12470 amidase; Provisional Back     alignment and domain information
>PRK06102 hypothetical protein; Provisional Back     alignment and domain information
>PRK06707 amidase; Provisional Back     alignment and domain information
>PRK07139 amidase; Provisional Back     alignment and domain information
>PRK07042 amidase; Provisional Back     alignment and domain information
>TIGR02713 allophanate_hyd allophanate hydrolase Back     alignment and domain information
>PRK07869 amidase; Provisional Back     alignment and domain information
>PRK06529 amidase; Provisional Back     alignment and domain information
>PRK11910 amidase; Provisional Back     alignment and domain information
>PRK06565 amidase; Validated Back     alignment and domain information
>PRK08310 amidase; Provisional Back     alignment and domain information
>PLN02722 indole-3-acetamide amidohydrolase Back     alignment and domain information
>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query156
1m21_A 503 Crystal Structure Analysis Of The Peptide Amidase P 1e-32
3al0_A 475 Crystal Structure Of The Glutamine Transamidosome F 2e-12
3h0l_A 478 Structure Of Trna-Dependent Amidotransferase Gatcab 5e-12
2df4_A 485 Structure Of Trna-Dependent Amidotransferase Gatcab 7e-12
3a1k_A 521 Crystal Structure Of Rhodococcus Sp. N771 Amidase L 1e-11
3a1i_A 521 Crystal Structure Of Rhodococcus Sp. N-771 Amidase 3e-11
2gi3_A 476 Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf 4e-11
2dc0_A 434 Crystal Structure Of Amidase Length = 434 1e-09
3kfu_E 471 Crystal Structure Of The Transamidosome Length = 47 3e-08
4gyr_A 621 Granulibacter Bethesdensis Allophanate Hydrolase Ap 6e-08
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503 Back     alignment and structure 
Iteration: 1

 Score =  135 bits (339), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/147 (48%), Positives = 93/147 (63%), Gaps = 11/147 (7%)
Query: 1   NPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
           NPY +S  PC            NLA+V++GTETDGSI+CP++ N VVGLKPT+GL SR G
Sbjct: 154 NPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDG 213
Query: 61  VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPAT-----RAASEYIPRGGYKQFLR 115
           +IPI+  QD+ GP+ R+VADAA VL AIAG D  DPAT     RA  +Y  R      L 
Sbjct: 214 IIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADPATATMPGRAVYDYTAR------LD 267
Query: 116 PHGLKGKRLGIVRNPFFNFDEGSPLAQ 142
           P GL+GKR+G+++ P   +    PL +
Sbjct: 268 PQGLRGKRIGLLQTPLLKYRGMPPLIE 294
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475 Back     alignment and structure
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478 Back     alignment and structure
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485 Back     alignment and structure
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase Length = 521 Back     alignment and structure
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase Complexed With Benzamide Length = 521 Back     alignment and structure
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476 Back     alignment and structure
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434 Back     alignment and structure
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471 Back     alignment and structure
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo Length = 621 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query156
1m22_A 503 Peptide amidase, PAM; eleven-stranded beta sheet, 2e-74
1o9p_A 414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 1e-36
3a1k_A 521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 9e-36
3h0l_A 478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 2e-33
3ip4_A 485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 2e-33
2dc0_A 434 Probable amidase; structural genomics, NPPSFA, nat 1e-32
2gi3_A 476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 2e-32
3kfu_E 471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 2e-32
3a2q_A 493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 6e-28
3ppm_A 573 Fatty-acid amide hydrolase 1; protein-inhibitor co 5e-22
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503 Back     alignment and structure
 Score =  229 bits (586), Expect = 2e-74
 Identities = 79/152 (51%), Positives = 103/152 (67%), Gaps = 4/152 (2%)

Query: 1   NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
           NPY +S  PCGSSSGSA++VAANLA+V++GTETDGSI+CP++ N VVGLKPT+GL SR G
Sbjct: 154 NPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDG 213

Query: 61  VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLK 120
           +IPI+  QD+ GP+ R+VADAA VL AIAG D  DPAT           Y   L P GL+
Sbjct: 214 IIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADPATATMPGRAVY-DYTARLDPQGLR 272

Query: 121 GKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLR 152
           GKR+G+++ P     +   +  + +     LR
Sbjct: 273 GKRIGLLQTP---LLKYRGMPPLIEQAATELR 301
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414 Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521 Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478 Back     alignment and structure
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485 Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434 Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476 Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493 Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query156
3ip4_A 485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
2gi3_A 476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 100.0
3h0l_A 478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
3a1k_A 521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 100.0
3kfu_E 471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 100.0
1m22_A 503 Peptide amidase, PAM; eleven-stranded beta sheet, 100.0
3a2q_A 493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 100.0
1o9p_A 414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 100.0
2dc0_A 434 Probable amidase; structural genomics, NPPSFA, nat 100.0
3ppm_A 573 Fatty-acid amide hydrolase 1; protein-inhibitor co 100.0
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Back     alignment and structure
Probab=100.00  E-value=1.6e-49  Score=330.90  Aligned_cols=150  Identities=34%  Similarity=0.509  Sum_probs=135.5

Q ss_pred             CCCCCCCCCCCCChHHHHHHhcCCCceeeeccCCCccchhhhcCCcceecCCCCCccCCCCCCCCCCCcccccccCCHHH
Q 042017            1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVAD   80 (156)
Q Consensus         1 Np~~~~~~~gGSS~Gsaaava~g~~~~aiGtD~gGSiR~PA~~~Gv~g~kpt~g~~s~~G~~~~~~~~d~~Gplar~v~D   80 (156)
                      ||||+.|+|||||||||++||+|++++++|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+|+|
T Consensus       143 NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D  222 (485)
T 3ip4_A          143 NPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKD  222 (485)
T ss_dssp             BTTBTTBCCCSSSHHHHHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHH
T ss_pred             CccccCcCCCCCccHHHHHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccccccccCCCCcccccccCCCCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 042017           81 AAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRLNYA  156 (156)
Q Consensus        81 ~~~~~~~l~g~d~~d~~s~~~~~~~p~~~~~~~~~~~~l~~lrIg~~~~~~~~~~~~~~v~~~~~~ai~~L~~~Ga  156 (156)
                      +++++++|.|+|+.|+.+..    .|...|...+. ..++++||||+++.++ ...+++++++++++++.|+++|+
T Consensus       223 ~a~~l~vl~g~d~~d~~~~~----~~~~~~~~~~~-~~~~~lrigv~~~~~~-~~~~~~v~~a~~~a~~~L~~~G~  292 (485)
T 3ip4_A          223 NAIVLEAISGADVNDSTSAP----VDDVDFTSEIG-KDIKGLKVALPKEYLG-EGVADDVKEAVQNAVETLKSLGA  292 (485)
T ss_dssp             HHHHHHHHBSCCTTCTTSCC----CCCCCCSTTTT-CCCTTCEEEEEGGGGS-TTSCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCCCcccccccc----cCccchhhhhc-cCccCcEEEEECCccc-CCCCHHHHHHHHHHHHHHHHCCC
Confidence            99999999999999987654    23334555443 4678999999876443 36899999999999999999985
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Back     alignment and structure
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Back     alignment and structure
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 156
d2f2aa1 485 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf 5e-30
d2gi3a1 475 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf 1e-22
d1m22a_ 490 c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon 4e-09
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score =  111 bits (277), Expect = 5e-30
 Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 6/152 (3%)

Query: 1   NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAG 60
           NP+   A P GSS GSA +VAA L  +SLG++T GSI  P++   VVG+KPT G  SR G
Sbjct: 143 NPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFG 202

Query: 61  VIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLK 120
           ++      D +GP+ R V D A VL+AI+G D  D  +      +    +   +    +K
Sbjct: 203 LVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAP----VDDVDFTSEIGK-DIK 257

Query: 121 GKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLR 152
           G ++ + +  +        + +   + + TL+
Sbjct: 258 GLKVALPKE-YLGEGVADDVKEAVQNAVETLK 288
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475 Back     information, alignment and structure
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query156
d2f2aa1 485 Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta 100.0
d2gi3a1 475 Glutamyl-tRNA(Gln) amidotransferase subunit A {The 100.0
d1mt5a_ 537 Fatty acid amide hydrolase (oleamide hydrolase) {R 100.0
d1m22a_ 490 Peptide amidase Pam {Stenotrophomonas maltophilia 100.0
d1ocka_ 412 Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 100.0
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.7e-48  Score=321.17  Aligned_cols=150  Identities=34%  Similarity=0.520  Sum_probs=136.9

Q ss_pred             CCCCCCCCCCCCChHHHHHHhcCCCceeeeccCCCccchhhhcCCcceecCCCCCccCCCCCCCCCCCcccccccCCHHH
Q 042017            1 NPYVLSADPCGSSSGSAISVAANLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVAD   80 (156)
Q Consensus         1 Np~~~~~~~gGSS~Gsaaava~g~~~~aiGtD~gGSiR~PA~~~Gv~g~kpt~g~~s~~G~~~~~~~~d~~Gplar~v~D   80 (156)
                      ||||+.++|||||||||++||+|+++|++|||++||||+||+||||||||||+|+||+.|++++++++|++|||||+|+|
T Consensus       143 NP~~~~~~~GGSSgGsaaavA~g~~~~alGtDt~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v~D  222 (485)
T d2f2aa1         143 NPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKD  222 (485)
T ss_dssp             BTTBTTBCCCSSSHHHHHHHHTTSCSCEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHH
T ss_pred             CCCCcccccCCccccchhhHHhccCceEEecCCCchhhhhHHHhCceeecCCCCCCCCCCCCCCcccCCeeccccCCHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccccccccCCCCcccccccCCCCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 042017           81 AAYVLDAIAGFDHYDPATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRLNYA  156 (156)
Q Consensus        81 ~~~~~~~l~g~d~~d~~s~~~~~~~p~~~~~~~~~~~~l~~lrIg~~~~~~~~~~~~~~v~~~~~~ai~~L~~~Ga  156 (156)
                      +++++++|.++++.|+.+..    .+...|..... ..++++||||+++++.. ..++++++++++++++|+++|+
T Consensus       223 ~~~ll~~~~g~~~~d~~~~~----~~~~~~~~~~~-~~~~~lrig~~~~~~~~-~~~~~i~~a~~~a~~~L~~~G~  292 (485)
T d2f2aa1         223 NAIVLEAISGADVNDSTSAP----VDDVDFTSEIG-KDIKGLKVALPKEYLGE-GVADDVKEAVQNAVETLKSLGA  292 (485)
T ss_dssp             HHHHHHHHBSCBTTBTTSCC----CCCCCCSTTTT-CCCTTCEEEEEGGGGST-TSCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhcccccccccccCC----CCccchhhhhc-CCccCCEEEEEcccccC-cCCHHHHHHHHHHHHHHHHCCC
Confidence            99999999999999987754    33344555554 56899999998875554 7899999999999999999985
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure