Citrus Sinensis ID: 042191

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MAEDKSGTESENKDSAASSAVVGKKRKGIISRIWNGIFRLKRDDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPALSSLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcc
Coil and Loop (DISEMBL)
maedksgtesenkdsaassAVVGKKRKGIISRIWNGIFRLKRDDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPALSSLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ
Flexible Loop (DISEMBL)
maedksgtesenkdsaassavvgkkrkgiisriwngifrlkrddFEKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPALSSLAYSAFVSFTRICDRKDQKTLERLRAERQAkidelkertnyyttqqliq
Low Complexity Region (SEG)
MAEDKSGTESENKDSAASSAVVGKKRKGIISRIWNGIFRLKRDDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFllpalsslaysaFVSFTRICDRKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ
Disordered region (IsUnstruct)
************************KRKGIISRIWNGIFRLKRDDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPALSSLAYSAFVSFTRICDRK*********************************
Disordered Region (DISOPRED)
*******************************RIWNGIFRLKRDDFEKRLQYI*********************TRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPALSSLAYSAFVSFTRICDRKDQKT*****************RTNYY*TQQLI*
Disordered Region (DISEMBL)
*************************RKGIISRIWNGIFRLKRDDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPALSSLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ
Disordered Region (DISPRO)
****************************IISRIWNGIFRLKRDDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPALSSLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEDKSGTESENKDSAASSAVVGKKRKGIISRIWNGIFRLKRDDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPALSSLAYSAFVSFTRICDRKDxxxxxxxxxxxxxxxxxxxxxTNYYTTQQLIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
Q9ZQ34	408	Uncharacterized protein A	no	no	0.947	0.394	0.642	3e-55

>sp|Q9ZQ34|Y2433_ARATH Uncharacterized protein At2g24330 OS=Arabidopsis thaliana GN=At2g24330 PE=2 SV=1

 Score =  214 bits (544), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 106/165 (64%), Positives = 125/165 (75%), Gaps = 4/165 (2%)

Query: 10  SENKDSAASSAVVGKK----RKGIISRIWNGIFRLKRDDFEKRLQYISKEEAAVLARMKR 65
            E  DSA   +  G+K    RKG+ SR+WN IFR++ DDFEKRL+ ISKEEA V  RMKR
Sbjct: 17  GEKNDSAVVLSASGEKKTTKRKGLFSRLWNAIFRVRGDDFEKRLKNISKEEATVRNRMKR 76

Query: 66  RSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPALSSLAYS 125
           RS T R   R+LI FSV FEVIAV YAIMTTR  DLDWK+R+ R+LPMFLLPA++ L YS
Sbjct: 77  RSITRRNFIRNLIAFSVFFEVIAVSYAIMTTRDEDLDWKLRSFRILPMFLLPAVAFLLYS 136

Query: 126 AFVSFTRICDRKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ 170
           + V F R+CDR+DQ TLE+L+AE   KI+ELKERTNYY TQQLIQ
Sbjct: 137 SLVGFWRMCDRRDQHTLEKLQAEMLGKINELKERTNYYITQQLIQ 181

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
255574191	398	conserved hypothetical protein [Ricinus	0.988	0.422	0.823	1e-75
449437084	401	PREDICTED: uncharacterized protein At2g2	0.982	0.416	0.761	4e-71
449533006	352	PREDICTED: uncharacterized protein At2g2	0.982	0.474	0.761	7e-71
225427520	429	PREDICTED: uncharacterized protein At2g2	1.0	0.396	0.739	9e-69
147837014	189	hypothetical protein VITISV_010405 [Viti	1.0	0.899	0.739	2e-67
357466475	455	Protein lunapark [Medicago truncatula] g	1.0	0.373	0.734	2e-64
224121268	349	predicted protein [Populus trichocarpa]	0.988	0.481	0.721	2e-63
297802924	407	hypothetical protein ARALYDRAFT_491637 [	0.876	0.366	0.751	8e-63
224147367	172	predicted protein [Populus trichocarpa]	0.923	0.912	0.748	1e-62
145350344	409	uncharacterized protein [Arabidopsis tha	0.864	0.359	0.734	3e-61

>gi|255574191|ref|XP_002528011.1| conserved hypothetical protein [Ricinus communis] gi|223532637|gb|EEF34423.1| conserved hypothetical protein [Ricinus communis]

 Score =  287 bits (735), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 140/170 (82%), Positives = 152/170 (89%), Gaps = 2/170 (1%)

Query: 1   MAEDKSGTESENKDSAASSAVVGKKRKGIISRIWNGIFRLKRDDFEKRLQYISKEEAAVL 60
           MAEDK    +EN  +   S VV KKRKG +SRIWNGIFRL  DDFEKRLQ ISKEEAAVL
Sbjct: 1   MAEDKG--IAENNKNEQPSVVVKKKRKGFMSRIWNGIFRLHGDDFEKRLQNISKEEAAVL 58

Query: 61  ARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPALS 120
           +RMK+RS TWR++TRHLIIFSVIFEVIAV YAIMTTRS+DL+WKMRA RVLPMFLLPALS
Sbjct: 59  SRMKKRSLTWRKMTRHLIIFSVIFEVIAVCYAIMTTRSMDLNWKMRAFRVLPMFLLPALS 118

Query: 121 SLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ 170
           S+AYSAFVSFTR+CDRKDQKTLERLRAERQAKIDELKE+TNYYTTQQLIQ
Sbjct: 119 SIAYSAFVSFTRMCDRKDQKTLERLRAERQAKIDELKEKTNYYTTQQLIQ 168

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437084|ref|XP_004136322.1| PREDICTED: uncharacterized protein At2g24330-like [Cucumis sativus]

 Score =  272 bits (695), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 131/172 (76%), Positives = 153/172 (88%), Gaps = 5/172 (2%)

Query: 1   MAEDKSGTESENKDSAASSAVVGKKRK--GIISRIWNGIFRLKRDDFEKRLQYISKEEAA 58
           MAE+K+  E E KDS A    VG+K+K  GI SR+WN IFR++ DDFEKRLQ+ISKEEAA
Sbjct: 1   MAEEKAAGEGEKKDSVAD---VGRKKKSRGIFSRLWNSIFRVRGDDFEKRLQHISKEEAA 57

Query: 59  VLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPA 118
           VLAR+KRRS TWRR+ R+LIIFSV+FE++AV YAI+TTR+VDL+WKMRA RVLPMFLLPA
Sbjct: 58  VLARLKRRSLTWRRMARNLIIFSVVFEIVAVCYAIITTRTVDLNWKMRAFRVLPMFLLPA 117

Query: 119 LSSLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ 170
           LS+LAY+AF+SFTR+CDRKDQKTLERLRAERQAKIDELKE+TNYY TQQLIQ
Sbjct: 118 LSTLAYTAFLSFTRMCDRKDQKTLERLRAERQAKIDELKEKTNYYITQQLIQ 169

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449533006|ref|XP_004173468.1| PREDICTED: uncharacterized protein At2g24330-like [Cucumis sativus]

 Score =  271 bits (693), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 131/172 (76%), Positives = 153/172 (88%), Gaps = 5/172 (2%)

Query: 1   MAEDKSGTESENKDSAASSAVVGKKRK--GIISRIWNGIFRLKRDDFEKRLQYISKEEAA 58
           MAE+K+  E E KDS A    VG+K+K  GI SR+WN IFR++ DDFEKRLQ+ISKEEAA
Sbjct: 1   MAEEKAAGEGEKKDSVAD---VGRKKKSRGIFSRLWNSIFRVRGDDFEKRLQHISKEEAA 57

Query: 59  VLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPA 118
           VLAR+KRRS TWRR+ R+LIIFSV+FE++AV YAI+TTR+VDL+WKMRA RVLPMFLLPA
Sbjct: 58  VLARLKRRSLTWRRMARNLIIFSVVFEIVAVCYAIITTRTVDLNWKMRAFRVLPMFLLPA 117

Query: 119 LSSLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ 170
           LS+LAY+AF+SFTR+CDRKDQKTLERLRAERQAKIDELKE+TNYY TQQLIQ
Sbjct: 118 LSTLAYTAFLSFTRMCDRKDQKTLERLRAERQAKIDELKEKTNYYITQQLIQ 169

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427520|ref|XP_002264767.1| PREDICTED: uncharacterized protein At2g24330 [Vitis vinifera] gi|296088463|emb|CBI37454.3| unnamed protein product [Vitis vinifera]

 Score =  264 bits (675), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 128/173 (73%), Positives = 145/173 (83%), Gaps = 3/173 (1%)

Query: 1   MAEDKSGTESENKDSAASSAVVG---KKRKGIISRIWNGIFRLKRDDFEKRLQYISKEEA 57
           MAE+    +   + S+A+    G   KKR+GIISRIWNG+FR   DDFEKRLQ+ISKEEA
Sbjct: 1   MAEEADKDQGNGQSSSAAEKDTGVQKKKRRGIISRIWNGLFRRHGDDFEKRLQHISKEEA 60

Query: 58  AVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLP 117
           +VLARMKRRSQ+ R +TR+LI+ SVI EVIAVGYAIMTTRSVDL+WKMRA RVLPMFLLP
Sbjct: 61  SVLARMKRRSQSSRTMTRNLIVLSVILEVIAVGYAIMTTRSVDLNWKMRAFRVLPMFLLP 120

Query: 118 ALSSLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ 170
            LSS AYS  VS TR+CDR+DQKTLERLRAER+AKIDELKERTNYYTTQQLIQ
Sbjct: 121 GLSSAAYSVIVSLTRMCDRRDQKTLERLRAERRAKIDELKERTNYYTTQQLIQ 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147837014|emb|CAN72482.1| hypothetical protein VITISV_010405 [Vitis vinifera]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 128/173 (73%), Positives = 146/173 (84%), Gaps = 3/173 (1%)

Query: 1   MAEDKSGTESENKDSAAS---SAVVGKKRKGIISRIWNGIFRLKRDDFEKRLQYISKEEA 57
           MAE+    +   + S+A+   + V  KKR+GIISRIWNG+FR   DDFEKRLQ+ISKEEA
Sbjct: 1   MAEEADKDQGNGQSSSAAEKDTGVQKKKRRGIISRIWNGLFRRHGDDFEKRLQHISKEEA 60

Query: 58  AVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLP 117
           +VLARMKRRSQ+ R +TR+LI+ SVI EVIAVGYAIMTTRSVDL+WKMRA RVLPMFLLP
Sbjct: 61  SVLARMKRRSQSSRTMTRNLIVLSVILEVIAVGYAIMTTRSVDLNWKMRAFRVLPMFLLP 120

Query: 118 ALSSLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ 170
            LSS AYS  VS TR+CDR+DQKTLERLRAER+AKIDELKERTNYYTTQQLIQ
Sbjct: 121 GLSSAAYSVIVSLTRMCDRRDQKTLERLRAERRAKIDELKERTNYYTTQQLIQ 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466475|ref|XP_003603522.1| Protein lunapark [Medicago truncatula] gi|355492570|gb|AES73773.1| Protein lunapark [Medicago truncatula]

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 127/173 (73%), Positives = 150/173 (86%), Gaps = 3/173 (1%)

Query: 1   MAEDKSGTESENKDS---AASSAVVGKKRKGIISRIWNGIFRLKRDDFEKRLQYISKEEA 57
           MA+DK+  E E K++   A +S  V KKRKG ISRIWNGIFRL  DDFEKRL++ISKEEA
Sbjct: 1   MADDKAVEEGEKKETSPTATASGNVKKKRKGFISRIWNGIFRLHGDDFEKRLKHISKEEA 60

Query: 58  AVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLP 117
            V+AR+ RRS++ R+ +R+LI+FSVIFEVIAVGYAIMTTRSV +DWKMRA+RVLPMFLLP
Sbjct: 61  TVIARVTRRSRSRRQTSRNLIVFSVIFEVIAVGYAIMTTRSVGIDWKMRAIRVLPMFLLP 120

Query: 118 ALSSLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ 170
           ALSS  YSAF++FTR+CDR+DQ  LE+LRAERQAKIDELKE+TNYYTTQQLIQ
Sbjct: 121 ALSSAVYSAFITFTRMCDRRDQNILEKLRAERQAKIDELKEKTNYYTTQQLIQ 173

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121268|ref|XP_002330785.1| predicted protein [Populus trichocarpa] gi|222872587|gb|EEF09718.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 122/169 (72%), Positives = 148/169 (87%), Gaps = 1/169 (0%)

Query: 2   AEDKSGTESENKDSAASSAVVGKKRKGIISRIWNGIFRLKRDDFEKRLQYISKEEAAVLA 61
            ED   T ++++DS+ S AV  +   GI+SR+W  +FR   DDFEKRLQ+ISKEEAAVL+
Sbjct: 3   GEDNKETATDSQDSS-SPAVKKRSGGGILSRVWKAVFRPHGDDFEKRLQHISKEEAAVLS 61

Query: 62  RMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPALSS 121
           R+ RRS+  R++TRHLI+FSV+FEVIAVGYAIMTTRS+D++WKMRA R+LPMFLLPALSS
Sbjct: 62  RINRRSRNRRKITRHLIVFSVLFEVIAVGYAIMTTRSMDMNWKMRAFRILPMFLLPALSS 121

Query: 122 LAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ 170
           LAYSAFVSFTR+CDR+DQKTLERL+AERQAKIDELKE+TNYY+TQQLIQ
Sbjct: 122 LAYSAFVSFTRMCDRRDQKTLERLQAERQAKIDELKEKTNYYSTQQLIQ 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802924|ref|XP_002869346.1| hypothetical protein ARALYDRAFT_491637 [Arabidopsis lyrata subsp. lyrata] gi|297315182|gb|EFH45605.1| hypothetical protein ARALYDRAFT_491637 [Arabidopsis lyrata subsp. lyrata]

 Score =  244 bits (624), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 112/149 (75%), Positives = 137/149 (91%)

Query: 22  VGKKRKGIISRIWNGIFRLKRDDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFS 81
           V KK+KG  SR+WNGIFR++ DDFEKRLQYISKEEA VL+RMKRRS TWR+LTR+LI+ S
Sbjct: 32  VKKKQKGFFSRLWNGIFRVRGDDFEKRLQYISKEEATVLSRMKRRSITWRKLTRNLIVSS 91

Query: 82  VIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPALSSLAYSAFVSFTRICDRKDQKT 141
           V+FE+IAVGYAI+TTR+ DLDW+MR+ R+LPMF+LPA+S+LAYS+ VSF+++ DR+DQKT
Sbjct: 92  VLFEIIAVGYAILTTRTEDLDWRMRSFRILPMFILPAVSALAYSSIVSFSKMFDRRDQKT 151

Query: 142 LERLRAERQAKIDELKERTNYYTTQQLIQ 170
           LE+LRAER AKI+ELKERTNYYTTQQLIQ
Sbjct: 152 LEKLRAERLAKINELKERTNYYTTQQLIQ 180

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224147367|ref|XP_002336463.1| predicted protein [Populus trichocarpa] gi|222835074|gb|EEE73523.1| predicted protein [Populus trichocarpa]

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/159 (74%), Positives = 136/159 (85%), Gaps = 2/159 (1%)

Query: 12  NKDSAASSAVVGKKRKGIISRIWNGIFRLKRDDFEKRLQYISKEEAAVLARMKRRSQTWR 71
           + DSA  +   G    G +SR+W  +FR   DDFEKRLQ+ISKEEAAVLAR+ RRS T R
Sbjct: 14  DSDSAKMTGRSGSG--GFLSRLWKAVFRPHGDDFEKRLQHISKEEAAVLARINRRSGTRR 71

Query: 72  RLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPALSSLAYSAFVSFT 131
           ++ RHLI+FSV+FEV+AVGYAIMTTRS+DL+WKMRA RVLPMFLLPALSSLAYSAFVSFT
Sbjct: 72  KIIRHLIVFSVLFEVLAVGYAIMTTRSMDLNWKMRAFRVLPMFLLPALSSLAYSAFVSFT 131

Query: 132 RICDRKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ 170
           R+ DR+DQ TLERLRAERQAKIDELKE+TNYYTTQQLIQ
Sbjct: 132 RMFDRRDQNTLERLRAERQAKIDELKEKTNYYTTQQLIQ 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145350344|ref|NP_194837.2| uncharacterized protein [Arabidopsis thaliana] gi|22531219|gb|AAM97113.1| unknown protein [Arabidopsis thaliana] gi|30725690|gb|AAP37867.1| At4g31080 [Arabidopsis thaliana] gi|51969062|dbj|BAD43223.1| putative protein [Arabidopsis thaliana] gi|51969510|dbj|BAD43447.1| putative protein [Arabidopsis thaliana] gi|51971082|dbj|BAD44233.1| putative protein [Arabidopsis thaliana] gi|62320045|dbj|BAD94195.1| putative protein [Arabidopsis thaliana] gi|110740411|dbj|BAF02100.1| hypothetical protein [Arabidopsis thaliana] gi|332660454|gb|AEE85854.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 108/147 (73%), Positives = 135/147 (91%)

Query: 24  KKRKGIISRIWNGIFRLKRDDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVI 83
           KK+ G  SR+WNGIFR++ DDFEKRLQYIS+EEA VL+RMKRRS +WR+LTR+LI+ SV+
Sbjct: 36  KKQNGFFSRLWNGIFRVRGDDFEKRLQYISREEATVLSRMKRRSISWRKLTRNLIVSSVL 95

Query: 84  FEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPALSSLAYSAFVSFTRICDRKDQKTLE 143
           FE+IAVGYAI+TTR+ DLDW+MR+ R+LPMF+LPA+S+LAYS+ VSF+++ DR+DQKTLE
Sbjct: 96  FEIIAVGYAILTTRTEDLDWRMRSFRILPMFILPAVSALAYSSIVSFSKMFDRRDQKTLE 155

Query: 144 RLRAERQAKIDELKERTNYYTTQQLIQ 170
           +LRAER AKI+ELKERTNYYTTQQLIQ
Sbjct: 156 KLRAERLAKINELKERTNYYTTQQLIQ 182

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
TAIR|locus:2061047	408	AT2G24330 "AT2G24330" [Arabido	0.941	0.392	0.603	3.4e-45

TAIR|locus:2061047 AT2G24330 "AT2G24330" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 99/164 (60%), Positives = 115/164 (70%)

Query:    11 ENKDSAASSAVVGKK----RKGIISRIWNGIFRLKRDDFEKRLQYISKEEAAVLARMKRR 66
             E  DSA   +  G+K    RKG+ SR+WN IFR++ DDFEKRL+ ISKEEA V  RMKRR
Sbjct:    18 EKNDSAVVLSASGEKKTTKRKGLFSRLWNAIFRVRGDDFEKRLKNISKEEATVRNRMKRR 77

Query:    67 SQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFXXXXXXXXXXXX 126
             S T R   R+LI FSV FEVIAV YAIMTTR  DLDWK+R+ R+LPMF            
Sbjct:    78 SITRRNFIRNLIAFSVFFEVIAVSYAIMTTRDEDLDWKLRSFRILPMFLLPAVAFLLYSS 137

Query:   127 FVSFTRICDRKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ 170
              V F R+CDR+DQ TLE+L+AE   KI+ELKERTNYY TQQLIQ
Sbjct:   138 LVGFWRMCDRRDQHTLEKLQAEMLGKINELKERTNYYITQQLIQ 181


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.134   0.377    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      170       158   0.00085  106 3  11 22  0.43    31
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  136 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.87u 0.17s 16.04t   Elapsed:  00:00:01
  Total cpu time:  15.87u 0.17s 16.04t   Elapsed:  00:00:01
  Start:  Thu May  9 20:03:19 2013   End:  Thu May  9 20:03:20 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00003200001 SubName- Full=Chromosome chr2 scaffold_140, whole genome shotgun sequence; (429 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	170
COG5415	251	COG5415, COG5415, Predicted integral membrane meta	9e-04

>gnl|CDD|227702 COG5415, COG5415, Predicted integral membrane metal-binding protein [General function prediction only]

 Score = 38.0 bits (88), Expect = 9e-04
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 136 RKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ 170
            +  + L +LRA  + K+++LKE T+Y  T  +IQ
Sbjct: 99  NRRLRKLAKLRAIHRKKLEKLKEETHYNATSSIIQ 133

Length = 251

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
COG5415	251	Predicted integral membrane metal-binding protein	99.8
KOG2846	328	consensus Predicted membrane protein [Function unk	99.09
PF13239	83	2TM: 2TM domain	93.57
PF04678	180	DUF607: Protein of unknown function, DUF607; Inter	86.61
COG3105	138	Uncharacterized protein conserved in bacteria [Fun	83.62
PF04341	91	DUF485: Protein of unknown function, DUF485; Inter	82.5
PF05055	336	DUF677: Protein of unknown function (DUF677); Inte	80.25

>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]

Probab=99.80  E-value=2e-18  Score=141.32  Aligned_cols=123  Identities=19%  Similarity=0.296  Sum_probs=105.0

Q ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHhhhhhhhHHHHHHHHHH
Q 042191           43 DDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPALSSL  122 (170)
Q Consensus        43 ~~FEK~L~~Isk~i~~~~~~l~~~~~~~rr~~~~l~lYs~~l~vl~v~Y~~~~~~~~~~~w~~r~~~~lp~~~~P~li~l  122 (170)
                      .+|--.|..|+.+|++++-.+++.|...+.|+.++++||+.++++++.|.||-...     ....+.+..++++.+-.|+
T Consensus        11 ~~~~~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv~slAl~~l~~S~iy~~~~~-----y~~~~~It~~llgs~slym   85 (251)
T COG5415          11 TKYTADLSRLESQIHQLDVALKKSQSILSQWQSRLTVYSLALTVLALSYIYWEYHG-----YRPYLVITALLLGSGSLYM   85 (251)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccc-----cchhHHHHHHHHhhhHHHH
Confidence            46778999999999999999999999999999999999999999998888872110     0022233344455555678


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCcHhHHhhhC
Q 042191          123 AYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ  170 (170)
Q Consensus       123 ~r~~l~~~~~~~~~r~~~kLe~Lr~e~kkkIEeLKe~TnY~sT~~LIq  170 (170)
                      .||++.+||.+++++...+|.+||++|+++||.||++|.|+.|++|||
T Consensus        86 frwal~~lye~r~~r~~~~L~kLra~~rk~l~~LK~e~~y~aT~~ii~  133 (251)
T COG5415          86 FRWALTKLYEFRNNRRLRKLAKLRAIHRKKLEKLKEETHYNATSSIIQ  133 (251)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999996

>KOG2846 consensus Predicted membrane protein [Function unknown]

Probab=99.09  E-value=1.5e-10  Score=100.45  Aligned_cols=103  Identities=8%  Similarity=0.090  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhccCCCchhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 042191           62 RMKRRSQTWRRLTRHLIIFSVIFEVIA--VGYAIMTTRSVDLDWKMRALRVLPMFLLPALSSLAYSAFVSFTRICDRKDQ  139 (170)
Q Consensus        62 ~l~~~~~~~rr~~~~l~lYs~~l~vl~--v~Y~~~~~~~~~~~w~~r~~~~lp~~~~P~li~l~r~~l~~~~~~~~~r~~  139 (170)
                      ++.+.+++.++  ..++.|++.++++.  +.+.++    .+..|..+..+++|++++|++++++++++.+||.|++++++
T Consensus         4 ~~~~~~r~~~~--~~~~~y~~~~~~~~~~i~~~~~----~~~~~q~~~~~~~p~l~~~~I~~~~~~~~~~y~~~~~~r~~   77 (328)
T KOG2846|consen    4 ALGKWVRGSRN--TFVTKYTSDLYIFTSQIHQLDY----APEKSQSILSQWQPNLGFPGIILTVRRLSYTYFEYRLNRNT   77 (328)
T ss_pred             Hhhhhhhcccc--eeeeehhHHHHHHHHHHHhhhc----cCchhHHHHHHHHHHhcchHHHHHHHHHHHhhhheecccch
Confidence            34444444444  45556666665543  344444    78889888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcHhHHhhhC
Q 042191          140 KTLERLRAERQAKIDELKERTNYYTTQQLIQ  170 (170)
Q Consensus       140 ~kLe~Lr~e~kkkIEeLKe~TnY~sT~~LIq  170 (170)
                      .+|++|+++....++++++.+.|..++.|||
T Consensus        78 ~~lt~L~s~~~~ll~~v~~~~ly~~a~~il~  108 (328)
T KOG2846|consen   78 LKLTRLKSQKSKLLELVLETKLYKVALNILE  108 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999885

>PF13239 2TM: 2TM domain

Probab=93.57  E-value=1.3  Score=30.88  Aligned_cols=29  Identities=17%  Similarity=0.340  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042191           64 KRRSQTWRRLTRHLIIFSVIFEVIAVGYA   92 (170)
Q Consensus        64 ~~~~~~~rr~~~~l~lYs~~l~vl~v~Y~   92 (170)
                      +++.++.+.+..+++.|.++..++++...
T Consensus         6 ~~~v~~~k~fy~Hl~~y~ivn~~l~~in~   34 (83)
T PF13239_consen    6 KKRVKRRKGFYRHLAVYLIVNSFLIFINL   34 (83)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444556677778877776655554333

>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109

Probab=86.61  E-value=15  Score=29.39  Aligned_cols=38  Identities=18%  Similarity=0.190  Sum_probs=17.6

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042191           47 KRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIF   84 (170)
Q Consensus        47 K~L~~Isk~i~~~~~~l~~~~~~~rr~~~~l~lYs~~l   84 (170)
                      +.|..+.++++.++.....-.....+-..++...++.+
T Consensus        64 ~~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl~~  101 (180)
T PF04678_consen   64 KRLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGLAL  101 (180)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566665555444444444444434444444433

>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.62  E-value=5.2  Score=31.09  Aligned_cols=31  Identities=26%  Similarity=0.372  Sum_probs=24.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcCcHhHHhhh
Q 042191          137 KDQKTLERLRAERQAKIDELKERTNYYTTQQLI  169 (170)
Q Consensus       137 r~~~kLe~Lr~e~kkkIEeLKe~TnY~sT~~LI  169 (170)
                      +.|..|++++.+....=+||-+  .|+.|.+|+
T Consensus        38 ~~q~ELe~~K~~ld~~rqel~~--HFa~sAeLl   68 (138)
T COG3105          38 KLQYELEKVKAQLDEYRQELVK--HFARSAELL   68 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            5677888888887777777765  888888886

>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins

Probab=82.50  E-value=12  Score=26.66  Aligned_cols=19  Identities=0%  Similarity=-0.295  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 042191          119 LSSLAYSAFVSFTRICDRK  137 (170)
Q Consensus       119 li~l~r~~l~~~~~~~~~r  137 (170)
                      .++++-+++..+|-++-|+
T Consensus        61 ~~~~~~~~l~~~Yv~~An~   79 (91)
T PF04341_consen   61 GQIVFAWVLTWLYVRRANR   79 (91)
T ss_pred             HHHHHHHHHHHHHHHHHcc
Confidence            4445667777788776655

>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants

Probab=80.25  E-value=42  Score=29.77  Aligned_cols=17  Identities=18%  Similarity=0.513  Sum_probs=7.4

Q ss_pred             HHHhhHHHHHHHHHHHH
Q 042191           47 KRLQYISKEEAAVLARM   63 (170)
Q Consensus        47 K~L~~Isk~i~~~~~~l   63 (170)
                      ...+.+-++-..+..+|
T Consensus       146 ~~F~~i~~~~~~Ll~kL  162 (336)
T PF05055_consen  146 HQFQSIHDQQSSLLEKL  162 (336)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34445544433344433

This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00