Citrus Sinensis ID: 042373
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 494 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SF41 | 989 | DEAD-box ATP-dependent RN | yes | no | 0.589 | 0.294 | 0.456 | 2e-75 | |
| Q84UQ1 | 1049 | DEAD-box ATP-dependent RN | yes | no | 0.461 | 0.217 | 0.551 | 4e-74 | |
| Q8H0U8 | 1166 | DEAD-box ATP-dependent RN | no | no | 0.607 | 0.257 | 0.439 | 2e-73 | |
| Q0J7Y8 | 947 | DEAD-box ATP-dependent RN | no | no | 0.461 | 0.240 | 0.536 | 1e-70 | |
| Q4TVV3 | 1018 | Probable ATP-dependent RN | yes | no | 0.473 | 0.229 | 0.427 | 3e-55 | |
| Q1DHB2 | 1197 | Pre-mRNA-processing ATP-d | N/A | no | 0.542 | 0.223 | 0.396 | 8e-55 | |
| Q2HAD8 | 1064 | Pre-mRNA-processing ATP-d | N/A | no | 0.546 | 0.253 | 0.388 | 1e-54 | |
| Q4IP34 | 1207 | Pre-mRNA-processing ATP-d | yes | no | 0.629 | 0.257 | 0.369 | 1e-54 | |
| A6RW79 | 1151 | Pre-mRNA-processing ATP-d | N/A | no | 0.544 | 0.233 | 0.395 | 5e-54 | |
| A2QQA8 | 1180 | Pre-mRNA-processing ATP-d | yes | no | 0.615 | 0.257 | 0.380 | 8e-54 |
| >sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana GN=RH45 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 283 bits (725), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 174/381 (45%), Positives = 217/381 (56%), Gaps = 90/381 (23%)
Query: 15 EIDPLDAFMNDMECSFAEHPNNC-------FR------------------LGRRLPAEDS 49
EIDPLDAFMN M E +N F+ LGR + EDS
Sbjct: 250 EIDPLDAFMNTMVLPEVEKLSNIVIDGILDFKMNGKETGDQAKKGFNKAALGRIIQGEDS 309
Query: 50 HSASDYE---------------LFMKRAKKKKRDKNREIIKSKIKIDYQQLRKNFYTQAR 94
S DY FMKR KK K +K + SKI +Y+ RKNFY + +
Sbjct: 310 DS--DYSEPKSDDDPSLDEDDEEFMKRVKKTKAEKLSLVDHSKI--EYEPFRKNFYIEVK 365
Query: 95 EITRMSP----AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAP 150
+I+RM+ AYRK+L+LK+ K P+PI+ W QTGLT+KIL+T KLN+E P+ IQA
Sbjct: 366 DISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQ 425
Query: 151 ASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210
A +I+SG D + + +TGSGKTL F+LPMLRHI +QPPV GD P+GLVMAPT ELV+Q
Sbjct: 426 ALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGD-GPIGLVMAPTRELVQQ 484
Query: 211 ------------------------------QVRRG---------RMIDLLCKNGVKITNL 231
+++RG RMID+LC + KITNL
Sbjct: 485 IYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNL 544
Query: 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLS 291
RVTYLV+DEADRMFDMGFEPQITRIVQNIRPDRQ VLFS TFP +VE LARK V N
Sbjct: 545 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARK--VLNKP 602
Query: 292 IANSVRARGLDEKELELVINF 312
+ V R + K++ ++
Sbjct: 603 VEIQVGGRSVVNKDITQLVEI 623
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Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica GN=Os08g0159900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (713), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 151/274 (55%), Positives = 183/274 (66%), Gaps = 46/274 (16%)
Query: 54 DYELFMKRAKKKKRDKNREIIKSKIKIDYQQLRKNFYTQAREITRMSP----AYRKQLDL 109
D E FMKR KK K +K + SKI DYQ RKNFY + ++IT+M+ AYRKQL+L
Sbjct: 355 DDEEFMKRVKKTKAEKLAIVDHSKI--DYQPFRKNFYIEVKDITKMAAEEVAAYRKQLEL 412
Query: 110 KIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGS 169
K+ K PKPIKTW Q+GLT+K+L+T KL E P++IQA A +I+SG D + I +TGS
Sbjct: 413 KVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGS 472
Query: 170 GKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ------------------- 210
GKTLAF+LPMLRH+ +QP VVPG D P+GL+MAPT ELV Q
Sbjct: 473 GKTLAFVLPMLRHVKDQPAVVPG-DGPIGLIMAPTRELVVQIHSDIKKFSKALGINCVAI 531
Query: 211 -----------QVRR---------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGF 250
+++R GRMID+LC + KITNL RVT+LV+DEADRMFDMGF
Sbjct: 532 YGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGF 591
Query: 251 EPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284
EPQITRIVQN RPDRQ VLFS TFP +VEILARK
Sbjct: 592 EPQITRIVQNTRPDRQTVLFSATFPRQVEILARK 625
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Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana GN=RH42 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 277 bits (708), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 173/394 (43%), Positives = 220/394 (55%), Gaps = 94/394 (23%)
Query: 11 VVQIEIDPLDAFMNDME-------CSFA--------------------EHPNNCFR--LG 41
V + EIDPLDAFMN M C+ A + P F LG
Sbjct: 375 VDEEEIDPLDAFMNTMVLPEVEKFCNGAPPPAVNDGTLDSKMNGKESGDRPKKGFNKALG 434
Query: 42 RRLPAEDSHSASDYE---------------LFMKRAKKKKRDKNREIIKSKIKIDYQQLR 86
R + EDS S DY FMKR KK K +K + SKI +Y+ R
Sbjct: 435 RIIQGEDSDS--DYSEPKNDDDPSLDEDDEEFMKRVKKTKAEKLSLVDHSKI--EYEPFR 490
Query: 87 KNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHE 142
KNFY + ++I+RM+ YRK+L+LK+ K P+PIK W QTGLT+KIL+T KLN+E
Sbjct: 491 KNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYE 550
Query: 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202
P+ IQ A +I+SG D + + +TGSGKTL F+LPMLRHI +QPPV GD P+GLVMA
Sbjct: 551 KPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGD-GPIGLVMA 609
Query: 203 PTGELVRQ------------------------------QVRRG---------RMIDLLCK 223
PT ELV+Q +++RG RMID+LC
Sbjct: 610 PTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT 669
Query: 224 NGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILAR 283
+ KITNL RVT+LV+DEADRMFDMGFEPQITRI+QNIRP+RQ VLFS TFP +VE LAR
Sbjct: 670 SSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLAR 729
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPND 317
K V N + V R + K++ ++ +D
Sbjct: 730 K--VLNKPVEIQVGGRSVVNKDITQLVEVRPESD 761
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q0J7Y8|RH45_ORYSJ DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica GN=Os08g0154200 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 147/274 (53%), Positives = 178/274 (64%), Gaps = 46/274 (16%)
Query: 54 DYELFMKRAKKKKRDKNREIIKSKIKIDYQQLRKNFYTQAREITRMS----PAYRKQLDL 109
D E FMKR KK K +K + SKI +YQ RKN Y + ++IT M+ YRK L+L
Sbjct: 216 DDEEFMKRVKKTKVEKLAIVDHSKI--EYQPFRKNLYIEVKDITMMTGEEVATYRKNLEL 273
Query: 110 KIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGS 169
K+ K PKPIKTW Q+GLT+K+L+T KL E P+ IQA A +I+SG D + I +TGS
Sbjct: 274 KVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGS 333
Query: 170 GKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ------------------- 210
GKTLAF+LPMLRH+ +QPPVVPG D P+GL+MAPT ELV Q
Sbjct: 334 GKTLAFVLPMLRHVKDQPPVVPG-DGPIGLIMAPTRELVVQIHSDIKKFAKSLGINCVAI 392
Query: 211 -----------QVRR---------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGF 250
+++R GRMID+LC + KITNL RVT+LV+DEADRMFDMGF
Sbjct: 393 YGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGF 452
Query: 251 EPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284
EPQITRIVQN RPDRQ VLFS FP +VEILARK
Sbjct: 453 EPQITRIVQNTRPDRQTVLFSAIFPRQVEILARK 486
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Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/281 (42%), Positives = 165/281 (58%), Gaps = 47/281 (16%)
Query: 50 HSASDYELFMKRAKKKKRDKNREIIK--SKIKIDYQQLRKNFYTQAREITRMSPA----Y 103
+S+ + E+ ++ A + K R++++ KI Y+ RKNFY + E+ RMSP Y
Sbjct: 262 YSSEEEEVDLQTALTGFQTKQRKVLEPVDHQKIQYEPFRKNFYVEVPELARMSPEEVSEY 321
Query: 104 RKQLD-LKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSV 162
R +L+ + ++ K PKPIKTW Q G++ K+L K N+E P IQA A I+SG D +
Sbjct: 322 RLELEGISVKGKGCPKPIKTWVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLI 381
Query: 163 AITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ------------ 210
I +TGSGKT+AFLLPM RHI +Q PV + P+ ++M PT EL Q
Sbjct: 382 GIAKTGSGKTIAFLLPMFRHILDQRPVGEA-EGPLAVIMTPTRELALQITKECKKFSKSL 440
Query: 211 ------------------QVRR---------GRMIDLLCKNGVKITNLTRVTYLVLDEAD 243
+++R GRMID+L N ++TNL RVTY+V+DEAD
Sbjct: 441 ALRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEAD 500
Query: 244 RMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284
RMFDMGFEPQ+ RIV N+RPDRQ V+FS TFP +E LAR+
Sbjct: 501 RMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRTMEALARR 541
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Plays an essential role in splicing, either prior to, or during A complex formation. Danio rerio (taxid: 7955) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Coccidioides immitis (strain RS) GN=PRP5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 215 bits (547), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 130/328 (39%), Positives = 181/328 (55%), Gaps = 60/328 (18%)
Query: 15 EIDPLDAFMNDMECSFAEHPNNCFRLGRRLPAEDSHS-----------ASDYEL--FMKR 61
EIDPLDAFM+ ++ S + +R P ++ + A D+E F+
Sbjct: 437 EIDPLDAFMSGLKDSVTVDASK-YRKNVSKPKQEPEAIFGDEDDVDLKAMDFEADDFLAI 495
Query: 62 AKKKKRDKNREIIKSKIKIDYQQLRKNFYTQAREITRMS----PAYRKQLD-LKIREKCA 116
K ++ K+ + + IDY+ RK+FYT+ ++ ++ A R +LD +K+R
Sbjct: 496 TSKTRKKKDLPTVNHET-IDYEPFRKSFYTEPVDLAELNDEEVAALRLELDGIKVRGVDV 554
Query: 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFL 176
PKP++ W Q GL + L+ KL +E P +IQ+ A I+SG D + + +TGSGKT+AFL
Sbjct: 555 PKPVQKWSQCGLGVQTLDVIRKLGYEQPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFL 614
Query: 177 LPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ-------------------------- 210
LPM RHI +Q P + + PVGL+M PT EL Q
Sbjct: 615 LPMFRHIKDQRP-LENMEGPVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIK 673
Query: 211 ----QVRR---------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRI 257
+++R GRMIDLL N ++TNL RVTY+VLDEADRMFDMGFEPQ+ +I
Sbjct: 674 DQIAELKRGAEIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKI 733
Query: 258 VQNIRPDRQAVLFSPTFPPRVEILARKT 285
+ NIRP RQ VLFS TFP +E LARKT
Sbjct: 734 ISNIRPSRQTVLFSATFPRNMEALARKT 761
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ATP-dependent RNA helicase involved spliceosome assembly and in nuclear splicing. Catalyzes an ATP-dependent conformational change of U2 snRNP. Bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA. Coccidioides immitis (strain RS) (taxid: 246410) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=PRP5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (545), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 129/332 (38%), Positives = 179/332 (53%), Gaps = 62/332 (18%)
Query: 12 VQIEIDPLDAFMNDMECSFAEHPNNCF------RLGRRLPAEDSHSASDY---------E 56
V ++DPLDAFM D+E + + + G+ E S DY
Sbjct: 302 VDEDVDPLDAFMADLEQTGSAGGIGSVPARQKQKAGKGFEPEAYFSDDDYGYEEDKADPS 361
Query: 57 LFMKRAKKKKRDKNREIIKSKIKIDYQQLRKNFYTQAREITRMS----PAYRKQLD-LKI 111
+ A KKK+ I SKI+++ Q+RKNF+ + +E+++M+ R +LD +K+
Sbjct: 362 SILAMASKKKKKDIPTIDYSKIELN--QIRKNFWVEPQELSQMTEDDIADLRLELDGIKV 419
Query: 112 REKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGK 171
K PKP++ W Q GLT IL+ L +E P +IQ A +I+SG D + + +TGSGK
Sbjct: 420 SGKNVPKPVQKWSQCGLTRPILDVVEGLGYEKPTSIQMQALPVIMSGRDVIGVAKTGSGK 479
Query: 172 TLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ--------------------- 210
T+AF+LPMLRHI +Q PV GDD + L+M PT EL Q
Sbjct: 480 TMAFVLPMLRHIKDQDPVT-GDDGAIALIMTPTRELCTQIYSDLLPFAKALKLRAIAAYG 538
Query: 211 ---------QVRR---------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEP 252
+++R GRMIDLL N ++TNL R TYLVLDEADRMFDMGFEP
Sbjct: 539 GNAIKDQIAELKRGAEIIVATPGRMIDLLAANSGRVTNLKRATYLVLDEADRMFDMGFEP 598
Query: 253 QITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284
Q+ +I N+RPDRQ +LFS T P ++ L +K
Sbjct: 599 QVMKIFNNVRPDRQTILFSATMPRIIDALTKK 630
|
ATP-dependent RNA helicase involved spliceosome assembly and in nuclear splicing. Catalyzes an ATP-dependent conformational change of U2 snRNP. Bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA. Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PRP5 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 214 bits (545), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 138/373 (36%), Positives = 197/373 (52%), Gaps = 62/373 (16%)
Query: 2 PETTTKQLPVVQIEIDPLDAFMNDMECSFAEHPNNCFRLGRRLPAEDSHSASDYELFMK- 60
PE T+ + ++DPLDAFM D++ + P + E S +Y+ K
Sbjct: 445 PEPATQMEVDEEDDVDPLDAFMADLKQTDVRQPTKTSTTQKIQEPEAYFSDDEYDFNKKD 504
Query: 61 ----------RAKKKKRDKNREIIKSKIKIDYQQLRKNFYTQAREITRMSPA----YRKQ 106
AK+KK+D I SKI+I + +RKNF+ + E++ ++ A R +
Sbjct: 505 EGDASALLAITAKRKKKDIP-TIDYSKIEI--EPIRKNFWHEPAELSLLTEAEVADLRLE 561
Query: 107 LD-LKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAIT 165
LD +K+ K PKP++ W Q GLT + L+ L +E P IQ A ++SG D + +
Sbjct: 562 LDGIKVNGKDVPKPVQKWAQCGLTRQTLDVVDNLGYEKPTPIQMQALPALMSGRDVIGVA 621
Query: 166 ETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL------------------ 207
+TGSGKT+AFLLPM RHI +QPP + D P+GL+M PT EL
Sbjct: 622 KTGSGKTVAFLLPMFRHIKDQPP-LKDTDGPIGLIMTPTRELAVQIHKDCKPFLKMMGLR 680
Query: 208 ---------VRQQVRR------------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMF 246
+R+Q+ GRMIDLL N ++TNL RVTY+VLDEADRMF
Sbjct: 681 AVCAYGGAPIREQIAELKRGAEIIVCTPGRMIDLLAANQGRVTNLKRVTYVVLDEADRMF 740
Query: 247 DMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSIANSVRARGLDEKEL 306
DMGFEPQ+ +I N+RPDRQ +LFS T P ++ L +K V I +V R + KE+
Sbjct: 741 DMGFEPQVMKIFANMRPDRQTILFSATMPRIIDSLTKK--VLKNPIEVTVGGRSVVAKEI 798
Query: 307 ELVINF-DAPNDY 318
E ++ D P+ +
Sbjct: 799 EQIVEVRDEPSKF 811
|
ATP-dependent RNA helicase involved spliceosome assembly and in nuclear splicing. Catalyzes an ATP-dependent conformational change of U2 snRNP. Bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA. Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Botryotinia fuckeliana (strain B05.10) GN=prp5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (540), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 176/329 (53%), Gaps = 60/329 (18%)
Query: 15 EIDPLDAFMNDMECSFAEHPNNCFRLGRRL---PAEDSHSASDYELFMKR---------- 61
EIDPLDAFM +M F+ NN + + P E D ++ +K
Sbjct: 430 EIDPLDAFMEEMGDPFSLPKNNATFIKDNIKSQPQEPEPLFGDDDVDLKALDADPDEILA 489
Query: 62 -AKKKKRDKNREIIKSKIKIDYQQLRKNFYTQAREITRMSPA----YRKQLD-LKIREKC 115
A K ++ K+ I +D RKNFYT+ E+ M+ A R +LD +K+ K
Sbjct: 490 IANKARKKKDIPTINYSA-LDLPPFRKNFYTEPTELAEMTEAEIADLRLELDGIKVAGKD 548
Query: 116 APKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAF 175
PKP++ W Q GL K L+ +KL +E P +IQ A I+SG D + + +TGSGKT+AF
Sbjct: 549 VPKPVQKWSQCGLDVKSLDVITKLGYERPTSIQMQAIPAIMSGRDVIGVAKTGSGKTIAF 608
Query: 176 LLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ------------------------- 210
LLPM RHI +Q P + G D P+GL+M PT EL Q
Sbjct: 609 LLPMFRHIRDQRP-LKGSDGPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAYGGAII 667
Query: 211 -----QVRR---------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITR 256
++R GRMI+LL N ++TNL RVTY+VLDEADRMFDMGFEPQ+ +
Sbjct: 668 KDQIADLKRGAEIIVCTPGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMK 727
Query: 257 IVQNIRPDRQAVLFSPTFPPRVEILARKT 285
+ NIRP+RQ +LFS T P ++ LA+KT
Sbjct: 728 VFNNIRPNRQTILFSATMPRIMDALAKKT 756
|
ATP-dependent RNA helicase involved spliceosome assembly and in nuclear splicing. Catalyzes an ATP-dependent conformational change of U2 snRNP. Bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA. Botryotinia fuckeliana (strain B05.10) (taxid: 332648) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=prp5 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 211 bits (538), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 144/378 (38%), Positives = 196/378 (51%), Gaps = 74/378 (19%)
Query: 15 EIDPLDAFMNDMECSFAEHPNNCFRLGRRLPAE------DSH-------SASDYELFMKR 61
EIDPLDAFM+++ S + R + D H D + F+
Sbjct: 424 EIDPLDAFMSELAESAPPKKKVGAKFSRTKEQQPEALFGDEHDIDMTAVGDGDADDFLAI 483
Query: 62 AKKKKRDKNREIIKSKIKIDYQQLRKNFYTQAREITRMS----PAYRKQLD-LKIREKCA 116
A K K+ K+ + K K++Y+ RK FYT+ ++ +MS + R +LD +K+R
Sbjct: 484 ANKAKKKKDIPAVDHK-KVEYETFRKKFYTEPSDLAQMSDEEAASLRLELDGIKVRGVDV 542
Query: 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFL 176
PKP++ W Q GL + L+ KL +E +IQA A I+SG D + + +TGSGKT+AFL
Sbjct: 543 PKPVQKWSQCGLGVQTLDVIDKLGYEKTTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFL 602
Query: 177 LPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ-------------------------- 210
+PM RHI +Q P + + PVGL+M PT EL Q
Sbjct: 603 IPMFRHIKDQRP-LDNMEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIK 661
Query: 211 ----QVRR---------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRI 257
++R GRMIDLL N ++TNL RVTY+VLDEADRMFDMGFEPQ+ +I
Sbjct: 662 DQIADLKRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKI 721
Query: 258 VQNIRPDRQAVLFSPTFPPRVEILARKT------------NVCNLSIANSVRARGLDEK- 304
+ NIRPDRQ VLFS TFP +E LARKT +V I V R D+K
Sbjct: 722 MANIRPDRQTVLFSATFPRNMEALARKTLTKPIEIVVGGKSVVAPEITQIVEVRNDDQKF 781
Query: 305 --ELELVINFDAPNDYED 320
LEL+ N + ++ ED
Sbjct: 782 VRLLELLGNLYSSDENED 799
|
ATP-dependent RNA helicase involved spliceosome assembly and in nuclear splicing. Catalyzes an ATP-dependent conformational change of U2 snRNP. Bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA. Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 494 | ||||||
| 359474788 | 1147 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.585 | 0.251 | 0.507 | 1e-80 | |
| 222639930 | 938 | hypothetical protein OsJ_26071 [Oryza sa | 0.854 | 0.449 | 0.376 | 4e-80 | |
| 255578793 | 1173 | dead box ATP-dependent RNA helicase, put | 0.589 | 0.248 | 0.477 | 3e-79 | |
| 449525702 | 1098 | PREDICTED: LOW QUALITY PROTEIN: DEAD-box | 0.597 | 0.268 | 0.463 | 7e-78 | |
| 224083374 | 895 | predicted protein [Populus trichocarpa] | 0.589 | 0.325 | 0.472 | 8e-78 | |
| 449439149 | 1040 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.597 | 0.283 | 0.463 | 9e-78 | |
| 449439147 | 1118 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.597 | 0.263 | 0.463 | 1e-77 | |
| 224065635 | 1112 | predicted protein [Populus trichocarpa] | 0.587 | 0.260 | 0.464 | 8e-77 | |
| 356497367 | 1104 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.603 | 0.269 | 0.458 | 9e-77 | |
| 356538821 | 1107 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.603 | 0.269 | 0.453 | 5e-76 |
| >gi|359474788|ref|XP_002280049.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 42-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 181/357 (50%), Positives = 218/357 (61%), Gaps = 68/357 (19%)
Query: 15 EIDPLDAFMNDMECSFAEHPNNCF---RLGRRLPAEDSHSASDY---------------E 56
EIDPLDAFMN M E NN +P+EDS S DY +
Sbjct: 375 EIDPLDAFMNSMVLPEVEKLNNAAVSPTSNAVVPSEDSDS--DYGDLENNEDPLEEEDDD 432
Query: 57 LFMKRAKKKKRDKNREIIKSKIKIDYQQLRKNFYTQAREITRMSP----AYRKQLDLKIR 112
FMKR KK K + R I KIDY+ RKNFY + +E RM+P AYRKQL+LKI
Sbjct: 433 EFMKRVKKTKAE--RLSIVDHSKIDYKPFRKNFYIEVKESARMTPEEIAAYRKQLELKIH 490
Query: 113 EKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKT 172
K PKP+KTW QTGLTTKIL+T KLN+E P+ IQA A +I+SG D + I +TGSGKT
Sbjct: 491 GKDVPKPVKTWHQTGLTTKILDTIKKLNYERPMPIQAQALPIIMSGRDCIGIAKTGSGKT 550
Query: 173 LAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ---------------------- 210
LAF+LPMLRHI +QPPV+PG D P+GL+MAPT ELV+Q
Sbjct: 551 LAFVLPMLRHIKDQPPVMPG-DGPIGLIMAPTRELVQQIHSDIKKFAKVVGISCVPVYGG 609
Query: 211 --------QVRR---------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQ 253
+++R GRMID+LC +G KITNL RVTYLV+DEADRMFDMGFEPQ
Sbjct: 610 SGVAQQISELKRGAEVVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQ 669
Query: 254 ITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSIANSVRARGLDEKELELVI 310
ITRIVQN RPDRQ VLFS TFP +VEILAR+ V N + V R + K++ ++
Sbjct: 670 ITRIVQNTRPDRQTVLFSATFPRQVEILARR--VLNKPVEIQVGGRSVVNKDISQLV 724
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222639930|gb|EEE68062.1| hypothetical protein OsJ_26071 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 207/550 (37%), Positives = 265/550 (48%), Gaps = 128/550 (23%)
Query: 10 PVVQIEIDPLDAFMNDMECSFAEHPNNCFRLGRRLPAE---DSHSASDYELFMKRAKKKK 66
P+ + EIDPLDAFM+ M +PA D + S + KK +
Sbjct: 167 PMEEDEIDPLDAFMSSMVLPEVAKLETAVASMESMPASNMGDKNGKSAKDAVSNGDKKGQ 226
Query: 67 RDKNREIIKSKIKI-----------------DYQQLRKNFYTQAREITRMSPAYRKQLDL 109
+ I++ D + +++ T+ R+ RK L+L
Sbjct: 227 KKAMGRIMQGDDSDSDYDDDDDDEGGSKDEDDEEFMKRVKKTKERKWL----PTRKNLEL 282
Query: 110 KIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGS 169
K+ K PKPIKTW Q+GLT+K+L+T KL E P+ IQA A +I+SG D + I +TGS
Sbjct: 283 KVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGS 342
Query: 170 GKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ------------------- 210
GKTLAF+LPMLRH+ +QPPVVPGD P+GL+MAPT ELV Q
Sbjct: 343 GKTLAFVLPMLRHVKDQPPVVPGD-GPIGLIMAPTRELVVQIHSDIKKFAKSLGINCVAI 401
Query: 211 -----------QVRRG---------RMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGF 250
+++RG RMID+LC + KITNL RVT+LV+DEADRMFDMGF
Sbjct: 402 YGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGF 461
Query: 251 EPQITRIVQNIRPDRQAVLFSPTFPPRV------------EILARKTNVCNLSIANSVRA 298
EPQITRIVQN RPDRQ VLFS FP +V EI +V N I V
Sbjct: 462 EPQITRIVQNTRPDRQTVLFSAIFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEV 521
Query: 299 R---------------------------------------------------GLDEKELE 307
R G D+ + E
Sbjct: 522 RPENERFLRLLELLGEWFDRGKILVFVHSQDKCDSLLKDLFQRGYPCLSLHGGKDQTDRE 581
Query: 308 LVINFDAPNDYEDYVHHCCQSWLKSCAFRFISEENAIYATDLVKAFELSELVVRDDLKAV 367
+ NDY V + K A FIS+E YA DL KA ELSE V DLK +
Sbjct: 582 STLADFKSNDYVHRVGRTGHAGRKGFAVTFISDEEERYAPDLAKALELSEQAVPQDLKGL 641
Query: 368 ADSFIAKVNLGLGQVHGTGHGGVALNLMKRRIRRGKQLRKAQAKEYGFGEDKSDSE-DVD 426
AD F+AKV G Q HGTG+GG + + +KAQA+EYG+ EDKSDS+ D +
Sbjct: 642 ADRFMAKVKQGTEQAHGTGYGGSGFKFNEEEDEARRSAKKAQAREYGYEEDKSDSDSDEE 701
Query: 427 EGTRKSGGDI 436
G RK+GGD+
Sbjct: 702 GGVRKAGGDL 711
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255578793|ref|XP_002530253.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223530219|gb|EEF32123.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 183/383 (47%), Positives = 219/383 (57%), Gaps = 92/383 (24%)
Query: 15 EIDPLDAFMNDMECSFAEHPNNCF-------------------------------RLGRR 43
EIDPLDAFMN M E NN LGR
Sbjct: 375 EIDPLDAFMNSMVLPEVEKLNNAVITETVDENKVELKKKKEEGNEGEKLKKGSNKSLGRI 434
Query: 44 LPAEDSHSA-------------SDYELFMKRAKKKKRDKNREIIKSKIKIDYQQLRKNFY 90
+P EDS S D + FMKR KK K +K + SKI DY+ RKNFY
Sbjct: 435 IPGEDSDSDYGDLENDEGPLDDEDDDEFMKRVKKTKAEKLSVVDHSKI--DYKPFRKNFY 492
Query: 91 TQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVA 146
+ +EI+RM+P AYRKQL+LKI K PKP+KTW QTGL +KILET KLN+E P+
Sbjct: 493 IEVKEISRMAPEEVAAYRKQLELKIHGKDVPKPVKTWHQTGLASKILETIKKLNYEKPMP 552
Query: 147 IQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE 206
IQA A +I+SG D + I +TGSGKTLAF+LPMLRHI +QP V G D P+GL+MAPT E
Sbjct: 553 IQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPLVEAG-DGPIGLIMAPTRE 611
Query: 207 LVRQ------------------------------QVRR---------GRMIDLLCKNGVK 227
LV+Q +++R GRMID+LC +G K
Sbjct: 612 LVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGK 671
Query: 228 ITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNV 287
ITNL RVTYLV+DEADRMFDMGFEPQITRIVQNIRPDRQ VLFS TFP +VEILARK V
Sbjct: 672 ITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARK--V 729
Query: 288 CNLSIANSVRARGLDEKELELVI 310
N + V R + K++ ++
Sbjct: 730 LNKPVEIQVGGRSVVNKDITQLV 752
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449525702|ref|XP_004169855.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 42-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 182/393 (46%), Positives = 221/393 (56%), Gaps = 98/393 (24%)
Query: 15 EIDPLDAFMNDMECSFAEHPNNCF---------------------------------RLG 41
EIDPLDAFMN M E N +G
Sbjct: 318 EIDPLDAFMNSMVLPEVEKLNKVEVPTVNDDKIVELKSRDKPSDQSGGKAQRRISNKSMG 377
Query: 42 RRLPAEDSHSASDY---------------ELFMKRAKKKKRDKNREIIKSKIKIDYQQLR 86
R +P EDS + DY + FMKR KK K +K + SK+ DYQ R
Sbjct: 378 RIIPGEDSDT--DYGDLENDGDTLEDEDDDEFMKRVKKTKAEKLSIVDHSKM--DYQPFR 433
Query: 87 KNFYTQAREITRMS----PAYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHE 142
KNFY + +EI+RM+ AYRKQL+LKI K PKP+KTW QTGLT+KILET KLN+E
Sbjct: 434 KNFYIEVKEISRMTLEEVAAYRKQLELKIHGKDVPKPVKTWHQTGLTSKILETIKKLNYE 493
Query: 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202
P+ IQA A +++SG D + I +TGSGKTLAF+LPMLRHI +Q PVVPG D P+GL+MA
Sbjct: 494 KPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQSPVVPG-DGPIGLIMA 552
Query: 203 PTGELVRQ------------------------------QVRR---------GRMIDLLCK 223
PT ELV+Q +++R GRMID+LC
Sbjct: 553 PTRELVQQIHSDIKKFSKVMGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCT 612
Query: 224 NGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILAR 283
+ KITNL RVTYLV+DEADRMFDMGFEPQITRIVQNIRPDRQ VLFS TFP +VEILAR
Sbjct: 613 SAGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILAR 672
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPN 316
K V N + V R + K++ ++ N
Sbjct: 673 K--VLNKPVEVQVGGRSVVNKDIAQLVEVRPEN 703
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224083374|ref|XP_002307002.1| predicted protein [Populus trichocarpa] gi|222856451|gb|EEE93998.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 297 bits (760), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 182/385 (47%), Positives = 216/385 (56%), Gaps = 94/385 (24%)
Query: 15 EIDPLDAFMNDMECSFAEHPNNCF---------------------------------RLG 41
EIDPLDAFMN M E NN LG
Sbjct: 101 EIDPLDAFMNSMVLPEVEMLNNAVVTQTADDNKADSKKKDKNDEGINGGQRKKGSHKSLG 160
Query: 42 RRLPAEDSHSA-------------SDYELFMKRAKKKKRDKNREIIKSKIKIDYQQLRKN 88
R +P EDS S D + FMKR KK K +K + SKI DY RKN
Sbjct: 161 RIIPGEDSDSDHGDLENSEVPLEDEDDDEFMKRVKKTKAEKLSIVDHSKI--DYSPFRKN 218
Query: 89 FYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENP 144
FY + +EI RM+P AYRK L+LKI K PKPIKTW QTGLT+KILET KLN+E P
Sbjct: 219 FYIEVKEILRMTPEEVTAYRKLLELKIHGKDVPKPIKTWHQTGLTSKILETIKKLNYEKP 278
Query: 145 VAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT 204
+ IQA A +I+SG D + I +TGSGKTLAF+LPMLRHI +QPPV G + P+GL+MAPT
Sbjct: 279 MTIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAG-EGPIGLIMAPT 337
Query: 205 GELVRQ------------------------------QVRR---------GRMIDLLCKNG 225
ELV+Q +++R GRMID+LC +G
Sbjct: 338 RELVQQIHSDIRKFTKALGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG 397
Query: 226 VKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKT 285
KITNL RVTYLV+DEADRMFDMGFEPQITRIVQNIRPD Q VLFS TFP +VE LARK
Sbjct: 398 GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDHQTVLFSATFPRQVETLARK- 456
Query: 286 NVCNLSIANSVRARGLDEKELELVI 310
V N + V R + K++ ++
Sbjct: 457 -VLNKPVEIQVGGRSVVNKDINQLV 480
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439149|ref|XP_004137350.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 42-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 182/393 (46%), Positives = 221/393 (56%), Gaps = 98/393 (24%)
Query: 15 EIDPLDAFMNDMECSFAEHPNNCF---------------------------------RLG 41
EIDPLDAFMN M E N +G
Sbjct: 240 EIDPLDAFMNSMVLPEVEKLNKVEVPTVNDDKIVELKSRDKPSDQSGGKAQRRISNKSMG 299
Query: 42 RRLPAEDSHSASDY---------------ELFMKRAKKKKRDKNREIIKSKIKIDYQQLR 86
R +P EDS + DY + FMKR KK K +K + SK+ DYQ R
Sbjct: 300 RIIPGEDSDT--DYGDLENDGDTLEDEDDDEFMKRVKKTKAEKLSIVDHSKM--DYQPFR 355
Query: 87 KNFYTQAREITRMS----PAYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHE 142
KNFY + +EI+RM+ AYRKQL+LKI K PKP+KTW QTGLT+KILET KLN+E
Sbjct: 356 KNFYIEVKEISRMTLEEVAAYRKQLELKIHGKDVPKPVKTWHQTGLTSKILETIKKLNYE 415
Query: 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202
P+ IQA A +++SG D + I +TGSGKTLAF+LPMLRHI +Q PVVPG D P+GL+MA
Sbjct: 416 KPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQSPVVPG-DGPIGLIMA 474
Query: 203 PTGELVRQ------------------------------QVRR---------GRMIDLLCK 223
PT ELV+Q +++R GRMID+LC
Sbjct: 475 PTRELVQQIHSDIKKFSKVMGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCT 534
Query: 224 NGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILAR 283
+ KITNL RVTYLV+DEADRMFDMGFEPQITRIVQNIRPDRQ VLFS TFP +VEILAR
Sbjct: 535 SAGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILAR 594
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPN 316
K V N + V R + K++ ++ N
Sbjct: 595 K--VLNKPVEVQVGGRSVVNKDIAQLVEVRPEN 625
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439147|ref|XP_004137349.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 42-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 182/393 (46%), Positives = 221/393 (56%), Gaps = 98/393 (24%)
Query: 15 EIDPLDAFMNDMECSFAEHPNNCF---------------------------------RLG 41
EIDPLDAFMN M E N +G
Sbjct: 318 EIDPLDAFMNSMVLPEVEKLNKVEVPTVNDDKIVELKSRDKPSDQSGGKAQRRISNKSMG 377
Query: 42 RRLPAEDSHSASDY---------------ELFMKRAKKKKRDKNREIIKSKIKIDYQQLR 86
R +P EDS + DY + FMKR KK K +K + SK+ DYQ R
Sbjct: 378 RIIPGEDSDT--DYGDLENDGDTLEDEDDDEFMKRVKKTKAEKLSIVDHSKM--DYQPFR 433
Query: 87 KNFYTQAREITRMS----PAYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHE 142
KNFY + +EI+RM+ AYRKQL+LKI K PKP+KTW QTGLT+KILET KLN+E
Sbjct: 434 KNFYIEVKEISRMTLEEVAAYRKQLELKIHGKDVPKPVKTWHQTGLTSKILETIKKLNYE 493
Query: 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202
P+ IQA A +++SG D + I +TGSGKTLAF+LPMLRHI +Q PVVPG D P+GL+MA
Sbjct: 494 KPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQSPVVPG-DGPIGLIMA 552
Query: 203 PTGELVRQ------------------------------QVRR---------GRMIDLLCK 223
PT ELV+Q +++R GRMID+LC
Sbjct: 553 PTRELVQQIHSDIKKFSKVMGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCT 612
Query: 224 NGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILAR 283
+ KITNL RVTYLV+DEADRMFDMGFEPQITRIVQNIRPDRQ VLFS TFP +VEILAR
Sbjct: 613 SAGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILAR 672
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPN 316
K V N + V R + K++ ++ N
Sbjct: 673 K--VLNKPVEVQVGGRSVVNKDIAQLVEVRPEN 703
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065635|ref|XP_002301895.1| predicted protein [Populus trichocarpa] gi|222843621|gb|EEE81168.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 185/398 (46%), Positives = 220/398 (55%), Gaps = 108/398 (27%)
Query: 15 EIDPLDAFMNDMECSFAEHPNNCF---------------------------------RLG 41
EIDPLDAFMN M E N+ LG
Sbjct: 318 EIDPLDAFMNSMVLPEVEKLNSTLVTHTADDNKTDLKNKDKKEERINGEQRKKGSHKSLG 377
Query: 42 RRLPAEDSHSASDY---------------ELFMKRAKKKKRDKNREIIKSKIKIDYQQLR 86
R +P EDS S DY + FMKR KK K +K + SKI DY R
Sbjct: 378 RIVPGEDSDS--DYGDLENGEDPLEEEDDDEFMKRVKKTKAEKLSIVDHSKI--DYNPFR 433
Query: 87 KNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHE 142
KNFY + +EI+RM+P A RK+L+LK+ K PKPIKTW QTGLT+KILET KLN+E
Sbjct: 434 KNFYIEVKEISRMTPEEVVACRKELELKLHGKDVPKPIKTWHQTGLTSKILETIKKLNYE 493
Query: 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202
P+ IQA A +I+SG D + I +TGSGKTLAF+LPMLRHI +QPPV G + P+GLVMA
Sbjct: 494 KPMTIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAG-EGPIGLVMA 552
Query: 203 PTGELVRQ------------------------------QVRR---------GRMIDLLCK 223
PT ELV+Q +++R GRMID+LC
Sbjct: 553 PTRELVQQIHSDIKKFAKALSIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT 612
Query: 224 NGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILAR 283
+G KITNL RVTYLV+DEADRMFDMGFEPQITRIVQNIRPDRQ VLFS TFP +VE LAR
Sbjct: 613 SGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLAR 672
Query: 284 KT------------NVCNLSIANSVRARGLDEKELELV 309
K +V N I V R D++ L L+
Sbjct: 673 KVLNKPVEIQVGGRSVVNKDITQLVELRTEDQRWLRLL 710
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497367|ref|XP_003517532.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 42-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 179/390 (45%), Positives = 220/390 (56%), Gaps = 92/390 (23%)
Query: 15 EIDPLDAFMNDMECSFAEHPNNCF--------------------------------RLGR 42
EIDPLDAFMN M E NN +GR
Sbjct: 332 EIDPLDAFMNSMVLPEVEKLNNAVTSSLSDKAIDVKPKDKGNGQNRGAQSRKGSNKSIGR 391
Query: 43 RLPAEDSHSA------------SDYELFMKRAKKKKRDKNREIIKSKIKIDYQQLRKNFY 90
+P E+S S D + FMKR KK K +K + SKI DY+ +KNFY
Sbjct: 392 IIPGEESDSDYADDEVEKDPLDEDDDEFMKRVKKTKAEKLSLVDHSKI--DYEPFKKNFY 449
Query: 91 TQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVA 146
+ +EI++M+P YRKQL+LKI K PKPIK+W QTGL +KILET K+N E P+
Sbjct: 450 IEVKEISKMTPEEAAVYRKQLELKIHGKDVPKPIKSWHQTGLPSKILETIKKMNFEMPMP 509
Query: 147 IQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE 206
IQA A +I+SG D + I +TGSGKTLAF+LPMLRHI +QPPVV G D P+GL+MAPT E
Sbjct: 510 IQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAG-DGPIGLIMAPTRE 568
Query: 207 LVRQ------------------------------QVRR---------GRMIDLLCKNGVK 227
LV+Q +++R GRMID+LC + K
Sbjct: 569 LVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGK 628
Query: 228 ITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNV 287
ITNL RVTYLV+DEADRMFDMGFEPQITRIVQNIRPDRQ VLFS TFP +VEILARK V
Sbjct: 629 ITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARK--V 686
Query: 288 CNLSIANSVRARGLDEKELELVINFDAPND 317
N + V R + K++ ++ N+
Sbjct: 687 LNKPVEIQVGGRSVVNKDITQLVEVRPDNE 716
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538821|ref|XP_003537899.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 42-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 177/390 (45%), Positives = 219/390 (56%), Gaps = 92/390 (23%)
Query: 15 EIDPLDAFMNDMECSFAEHPNNCF--------------------------------RLGR 42
EIDPLDAFMN M E NN +GR
Sbjct: 335 EIDPLDAFMNSMVLPEVEKLNNAVTSSLSGKAIDVKPKDKGNEQNRGAQSRKVSNKSIGR 394
Query: 43 RLPAEDSHSA------------SDYELFMKRAKKKKRDKNREIIKSKIKIDYQQLRKNFY 90
+P E+S S D + FMKR KK K +K + SKI Y+ +KNFY
Sbjct: 395 IIPGEESDSDYADDEVEKDPLDEDDDEFMKRVKKTKAEKLSLVDHSKIV--YEPFKKNFY 452
Query: 91 TQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVA 146
+ +E+++M+P YRKQL+LKI K PKPIK+W QTGL +KILET K+N E P+
Sbjct: 453 IEVKEVSKMTPEESAVYRKQLELKIHGKDVPKPIKSWHQTGLASKILETIKKMNFEKPMP 512
Query: 147 IQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE 206
IQA A +I+SG D + I +TGSGKTLAF+LPMLRHI +QPPVV G D P+GL+MAPT E
Sbjct: 513 IQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAG-DGPIGLIMAPTRE 571
Query: 207 LVRQ------------------------------QVRR---------GRMIDLLCKNGVK 227
LV+Q +++R GRMID+LC + K
Sbjct: 572 LVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGK 631
Query: 228 ITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNV 287
ITNL RVTYLV+DEADRMFDMGFEPQITRIVQNIRPDRQ VLFS TFP +VEILARK V
Sbjct: 632 ITNLHRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARK--V 689
Query: 288 CNLSIANSVRARGLDEKELELVINFDAPND 317
N + V R + K++ ++ N+
Sbjct: 690 LNKPVEIQVGGRSVVNKDITQLVEVRPDNE 719
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 494 | ||||||
| TAIR|locus:2074899 | 989 | AT3G09620 [Arabidopsis thalian | 0.374 | 0.187 | 0.489 | 2.7e-75 | |
| TAIR|locus:2037416 | 1166 | RCF1 "regulator of CBF gene ex | 0.386 | 0.163 | 0.479 | 7.6e-73 | |
| CGD|CAL0005725 | 884 | PRP5 [Candida albicans (taxid: | 0.141 | 0.079 | 0.614 | 3.1e-47 | |
| UNIPROTKB|Q5ADL0 | 884 | PRP5 "Pre-mRNA-processing ATP- | 0.141 | 0.079 | 0.614 | 3.1e-47 | |
| ASPGD|ASPL0000055571 | 1173 | AN1266 [Emericella nidulans (t | 0.210 | 0.088 | 0.527 | 6.4e-42 | |
| DICTYBASE|DDB_G0275443 | 1151 | helB1 "putative RNA splicing f | 0.184 | 0.079 | 0.569 | 1.3e-41 | |
| FB|FBgn0030631 | 1224 | CG6227 [Drosophila melanogaste | 0.400 | 0.161 | 0.356 | 2.4e-39 | |
| ZFIN|ZDB-GENE-030131-667 | 1035 | ddx46 "DEAD (Asp-Glu-Ala-Asp) | 0.402 | 0.192 | 0.363 | 6.7e-39 | |
| ZFIN|ZDB-GENE-030131-18 | 671 | si:dkey-156n14.5 "si:dkey-156n | 0.275 | 0.202 | 0.365 | 4.9e-38 | |
| UNIPROTKB|E1C2R8 | 496 | DDX17 "Uncharacterized protein | 0.131 | 0.131 | 0.632 | 2e-36 |
| TAIR|locus:2074899 AT3G09620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 410 (149.4 bits), Expect = 2.7e-75, Sum P(3) = 2.7e-75
Identities = 95/194 (48%), Positives = 113/194 (58%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISE 340
K++VCNL IA SV ARGLD KELELV+NFDAPN YEDYVH ++ K CA FISE
Sbjct: 661 KSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISE 720
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSFIAKVNXXXXXXXXXXXXXXALNLMKRRIR 400
++A YA DLVKA ELSE V DD+KAVA+ F+AKV +
Sbjct: 721 DDAKYAPDLVKALELSEQPVPDDVKAVAEGFMAKVKQGIEQAHGTGYGGSGFKFNEEEDE 780
Query: 401 RGKQLRKAQAKEYGFGEDKSDSEDVDEGTRKSGGDISHQDXXXXXXXXXXXXXXXXXXXX 460
K +KAQAKEYGF E+KSDSED ++ RK+GGDIS Q
Sbjct: 781 VRKAAKKAQAKEYGFEEEKSDSEDENDVVRKAGGDISQQQITLAQIAAIASAASKA---- 836
Query: 461 PSLISVAQLLPNGG 474
P ++ QLLPNGG
Sbjct: 837 P--VTANQLLPNGG 848
|
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| TAIR|locus:2037416 RCF1 "regulator of CBF gene expression 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 402 (146.6 bits), Expect = 7.6e-73, Sum P(3) = 7.6e-73
Identities = 94/196 (47%), Positives = 110/196 (56%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISE 340
K +VCNL IA SV ARGLD KELELV+NFDAPN YEDYVH ++ K CA FISE
Sbjct: 823 KNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISE 882
Query: 341 ENAIYATDLVKAFELSELVVRDDLKAVADSFIAKVNXXXXXXXXXXXXXXALNLMKRRIR 400
++A YA DLVKA ELSE V DDLKA+AD F+ KV +
Sbjct: 883 DDAKYAPDLVKALELSEQPVPDDLKALADGFMVKVKQGIEQAHGTGYGGSGFKFNEEEEE 942
Query: 401 RGKQLRKAQAKEYGFGEDKSDSEDVDEGTRKSGG-DISHQDXXXXXXXXXXXXXXXXXXX 459
K +KAQAKEYGF EDKSDSED ++ RK+GG +IS Q
Sbjct: 943 VRKAAKKAQAKEYGFEEDKSDSEDENDVVRKAGGGEISQQQATFAQIAAIAAAAKAAAAA 1002
Query: 460 XPSL-ISVAQLLPNGG 474
S ++ QLL NGG
Sbjct: 1003 PVSAPVTANQLLANGG 1018
|
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| CGD|CAL0005725 PRP5 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 232 (86.7 bits), Expect = 3.1e-47, Sum P(3) = 3.1e-47
Identities = 43/70 (61%), Positives = 56/70 (80%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+IDLL N ++ NL R T++VLDEADRMFD+GFEPQ+ +I+ IRPDRQ VLFS TF
Sbjct: 427 GRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDRQTVLFSATF 486
Query: 275 PPRVEILARK 284
P ++E LA++
Sbjct: 487 PRKMETLAKQ 496
|
|
| UNIPROTKB|Q5ADL0 PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase PRP5" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 232 (86.7 bits), Expect = 3.1e-47, Sum P(3) = 3.1e-47
Identities = 43/70 (61%), Positives = 56/70 (80%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+IDLL N ++ NL R T++VLDEADRMFD+GFEPQ+ +I+ IRPDRQ VLFS TF
Sbjct: 427 GRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDRQTVLFSATF 486
Query: 275 PPRVEILARK 284
P ++E LA++
Sbjct: 487 PRKMETLAKQ 496
|
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| ASPGD|ASPL0000055571 AN1266 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 270 (100.1 bits), Expect = 6.4e-42, Sum P(2) = 6.4e-42
Identities = 57/108 (52%), Positives = 74/108 (68%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMIDLL N ++TNL RVTY+VLDEADRMFDMGFEPQ+ +I+ N+RPDRQ VLFS TF
Sbjct: 673 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRPDRQTVLFSATF 732
Query: 275 PPRVEILARKTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYV 322
P +E LARKT + I V R + E+ ++ + N+ + +V
Sbjct: 733 PRNMEALARKTLTKPIEIV--VGGRSVVAPEITQIV--EVCNEEKKFV 776
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| DICTYBASE|DDB_G0275443 helB1 "putative RNA splicing factor" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 53/93 (56%), Positives = 67/93 (72%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GRMID+LC N +ITNL RVT+LVLDEADRMFDMGF PQI IV +IRPDRQ ++FS TF
Sbjct: 641 GRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDRQTIMFSATF 700
Query: 275 PPRVEILARKTNVCNLSIANSVRARGLDEKELE 307
PP+VE +A+K + N + R + ++E
Sbjct: 701 PPKVENVAKK--ILNKPLEIIAGGRSIVSSDIE 731
|
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| FB|FBgn0030631 CG6227 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 279 (103.3 bits), Expect = 2.4e-39, Sum P(3) = 2.4e-39
Identities = 78/219 (35%), Positives = 111/219 (50%)
Query: 80 IDYQQLRKNFYTQAREITRMSPA----YRKQLD-LKIREKCAPKPIKTWRQTGLTTKILE 134
+ Y RKNFY + E+TRM+ A YR L+ ++++ K PKPIKTW Q G++ K +E
Sbjct: 464 VTYAPFRKNFYVEVPELTRMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGVSKKEME 523
Query: 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXXX 194
+L E P IQ A I+SG D + I +TGSGKTLAF+LPM RHI +Q
Sbjct: 524 VLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDG 583
Query: 195 XXXXXXMAPTGELVRQ---QVRR-GRMIDL--LCKNG-----VKITNLTRVTYLVLDEAD 243
MAPT EL Q +R+ + + L +C G +I L R +++
Sbjct: 584 AIAII-MAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPG 642
Query: 244 RMFDM--GFEPQITRI--VQNIRPDRQAVLFSPTFPPRV 278
RM DM ++T + V + D +F F P+V
Sbjct: 643 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV 681
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| ZFIN|ZDB-GENE-030131-667 ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 6.7e-39, Sum P(3) = 6.7e-39
Identities = 80/220 (36%), Positives = 112/220 (50%)
Query: 79 KIDYQQLRKNFYTQAREITRMSPA----YRKQLD-LKIREKCAPKPIKTWRQTGLTTKIL 133
KI Y+ RKNFY + E+ RMSP YR +L+ + ++ K PKPIKTW Q G++ K+L
Sbjct: 310 KIQYEPFRKNFYVEVPELARMSPEEVSEYRLELEGISVKGKGCPKPIKTWVQCGISMKVL 369
Query: 134 ETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXXXXXX 193
K N+E P IQA A I+SG D + I +TGSGKT+AFLLPM RHI +Q
Sbjct: 370 NALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAE 429
Query: 194 XXXXXXXMAPTGELVRQQVR------RGRMIDLLCKNG-----VKITNLTRVTYLVLDEA 242
M PT EL Q + + + ++C G +I L R +++
Sbjct: 430 GPLAVI-MTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVCTP 488
Query: 243 DRMFDM-GFEP-QITRI--VQNIRPDRQAVLFSPTFPPRV 278
RM DM G ++T + V + D +F F P+V
Sbjct: 489 GRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQV 528
|
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| ZFIN|ZDB-GENE-030131-18 si:dkey-156n14.5 "si:dkey-156n14.5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 4.9e-38, Sum P(3) = 4.9e-38
Identities = 53/145 (36%), Positives = 74/145 (51%)
Query: 77 KIKIDYQQL---RKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQTGLT 129
K K D QL KNFY + E+ MS YR++ ++ +R PKP+ + Q
Sbjct: 44 KKKWDLDQLPKFEKNFYNENPEVHHMSQYDVEEYRRKREITVRGSGCPKPVTNFHQAQFP 103
Query: 130 TKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQXXX 189
+++ + N + P AIQA L +SG D V I +TGSGKTLA+LLP + HI Q
Sbjct: 104 QYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL 163
Query: 190 XXXXXXXXXXXMAPTGELVRQQVRR 214
+APT EL QQV++
Sbjct: 164 ERGDGPICLV-LAPTRELA-QQVQQ 186
|
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| UNIPROTKB|E1C2R8 DDX17 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
Identities = 43/68 (63%), Positives = 50/68 (73%)
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR+ID L + G TNL R TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T+
Sbjct: 222 GRLIDFL-EAGK--TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 278
Query: 275 PPRVEILA 282
P V LA
Sbjct: 279 PKEVRQLA 286
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.6.4 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00036305001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (971 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 494 | |||
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 4e-52 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 2e-44 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 1e-34 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 2e-28 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 1e-22 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 3e-22 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 5e-22 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-21 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 3e-17 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 5e-17 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 1e-16 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 3e-16 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 5e-15 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 1e-11 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 2e-10 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 9e-08 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 1e-06 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 4e-06 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 6e-06 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 3e-04 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 0.001 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 0.002 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 0.003 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 4e-52
Identities = 98/254 (38%), Positives = 130/254 (51%), Gaps = 53/254 (20%)
Query: 79 KIDYQQ-----LRKNFYTQAREITRMSPA----YRKQLDLKIRE-KCAPKPIKTWRQTGL 128
ID++ KNFY + E++ +S RK+ ++ I + PKP+ ++ T
Sbjct: 78 PIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSF 137
Query: 129 TTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPP 188
IL++ P IQ + +SG D + I ETGSGKTLAFLLP + HI QP
Sbjct: 138 PDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL 197
Query: 189 VVPGDDSPVGLVMAPTGELV---RQQVRR------------------------------- 214
+ G D P+ LV+APT EL R+Q +
Sbjct: 198 LRYG-DGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEI 256
Query: 215 -----GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269
GR+ID L N +TNL RVTYLVLDEADRM DMGFEPQI +IV IRPDRQ ++
Sbjct: 257 LIACPGRLIDFLESN---VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLM 313
Query: 270 FSPTFPPRVEILAR 283
+S T+P V+ LAR
Sbjct: 314 WSATWPKEVQSLAR 327
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Length = 545 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 2e-44
Identities = 75/201 (37%), Positives = 101/201 (50%), Gaps = 46/201 (22%)
Query: 123 WRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRH 182
+ + GL+ ++L L E P IQA A ++SG D + +TGSGKT AFL+P+L
Sbjct: 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEK 60
Query: 183 IWEQPPVVPGDDSPVGLVMAPTGELVRQ---------------------------QVRR- 214
+ P D P L++APT EL Q Q+R+
Sbjct: 61 LDPSPKK----DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL 116
Query: 215 -----------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP 263
GR++DLL + G +L++V YLVLDEADRM DMGFE QI I++ +
Sbjct: 117 KRGPHIVVATPGRLLDLL-ERGKL--DLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK 173
Query: 264 DRQAVLFSPTFPPRVEILARK 284
DRQ +LFS T P V LARK
Sbjct: 174 DRQTLLFSATMPKEVRDLARK 194
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A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 1e-34
Identities = 70/221 (31%), Positives = 100/221 (45%), Gaps = 47/221 (21%)
Query: 104 RKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVA 163
K + K + GL+ ++L+ L E P IQ A LI++G D +
Sbjct: 12 LKSAHNVALSRGEEKTPPEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLG 71
Query: 164 ITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ------------- 210
+TG+GKT AFLLP+L+ I + L++APT EL Q
Sbjct: 72 QAQTGTGKTAAFLLPLLQKILKSVER----KYVSALILAPTRELAVQIAEELRKLGKNLG 127
Query: 211 ------------------QVRR---------GRMIDLLCKNGVKITNLTRVTYLVLDEAD 243
++R GR++DL+ K G +L+ V LVLDEAD
Sbjct: 128 GLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLI-KRGKL--DLSGVETLVLDEAD 184
Query: 244 RMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284
RM DMGF I +I++ + PDRQ +LFS T P + LAR+
Sbjct: 185 RMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARR 225
|
Length = 513 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-28
Identities = 59/176 (33%), Positives = 76/176 (43%), Gaps = 48/176 (27%)
Query: 146 AIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG 205
IQA A I+SG D + TGSGKTLAFLLP+L+ + + P LV+APT
Sbjct: 2 PIQAQAIPAILSGKDVLVQAPTGSGKTLAFLLPILQALLPK------KGGPQALVLAPTR 55
Query: 206 ELVRQQVRR----------------------------------------GRMIDLLCKNG 225
EL Q GR++DLL
Sbjct: 56 ELAEQIYEELKKLFKILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLL--RR 113
Query: 226 VKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEIL 281
K+ L + LVLDEA R+ DMGF + I+ + PDRQ +L S T P +E L
Sbjct: 114 GKLKLLKNLKLLVLDEAHRLLDMGFGDDLEEILSRLPPDRQILLLSATLPRNLEDL 169
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 58/197 (29%), Positives = 90/197 (45%), Gaps = 49/197 (24%)
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQP 187
L +L ++L + IQA + I++G D +A +TGSGKT AF L +L+ + +
Sbjct: 11 LPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR 70
Query: 188 PVVPGDDSPVGLVMAPTGEL---VRQQVRR------------------------------ 214
V LV+ PT EL V +++RR
Sbjct: 71 FRVQA------LVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGA 124
Query: 215 -------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQA 267
GR++D L K + +L + LVLDEADRM DMGF+ I I++ RQ
Sbjct: 125 HIIVGTPGRILDHLRKGTL---DLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQT 181
Query: 268 VLFSPTFPPRVEILARK 284
+LFS T+P + ++++
Sbjct: 182 LLFSATYPEGIAAISQR 198
|
Length = 460 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 3e-22
Identities = 65/197 (32%), Positives = 90/197 (45%), Gaps = 42/197 (21%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
GL+ IL ++ + P IQ A ++ G D +A +TG+GKT F LP+L+H+ +
Sbjct: 7 GLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITR 66
Query: 187 PPVVPGDDSPVGLVMAPTGELVRQ---QVRR----------------------------- 214
P G L++ PT EL Q VR
Sbjct: 67 QPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGV 126
Query: 215 -------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQA 267
GR++DL +N VK L +V LVLDEADRM DMGF I R++ + RQ
Sbjct: 127 DVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQN 183
Query: 268 VLFSPTFPPRVEILARK 284
+LFS TF ++ LA K
Sbjct: 184 LLFSATFSDDIKALAEK 200
|
Length = 456 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 5e-22
Identities = 65/221 (29%), Positives = 98/221 (44%), Gaps = 44/221 (19%)
Query: 102 AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDS 161
R++L++ ++ + P PI ++ GL K+L +E P IQ A +SG
Sbjct: 102 LLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSL 161
Query: 162 VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD-SPVGLVMAPTGELVRQ---------- 210
+ +TGSGKT +FL+P++ P + +P+ +V+ PT EL Q
Sbjct: 162 LVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGK 221
Query: 211 -----------------QVRR------------GRMIDLLCKNGVKITNLTRVTYLVLDE 241
Q+ R GR+IDLL K+ + L V+ LVLDE
Sbjct: 222 GLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDI---ELDNVSVLVLDE 278
Query: 242 ADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILA 282
D M + GF Q+ +I Q + Q +LFS T P VE A
Sbjct: 279 VDCMLERGFRDQVMQIFQAL-SQPQVLLFSATVSPEVEKFA 318
|
Length = 518 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 2e-21
Identities = 50/190 (26%), Positives = 72/190 (37%), Gaps = 51/190 (26%)
Query: 136 FSKLNHENPVAIQAPASALIISGLDSVAIT-ETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194
K E Q A ++SGL V + TGSGKTLA LLP L +
Sbjct: 1 IEKFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKG------ 54
Query: 195 SPVGLVMAPTGELVRQQVRR---------------------------------------- 214
LV+ PT EL Q
Sbjct: 55 -GRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTP 113
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
GR++DLL + + L+ V ++LDEA R+ D GF Q+ ++++ + + Q +L S T
Sbjct: 114 GRLLDLLENDKLS---LSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATP 170
Query: 275 PPRVEILARK 284
P +E L
Sbjct: 171 PEEIENLLEL 180
|
Length = 201 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 3e-17
Identities = 42/153 (27%), Positives = 59/153 (38%), Gaps = 48/153 (31%)
Query: 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRR----- 214
D + TGSGKTLA LLP+L + LV+APT EL Q R
Sbjct: 2 DVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKELF 54
Query: 215 ---------------------------------GRMIDLLCKNGVKITNLTRVTYLVLDE 241
GR++D L + + L ++ L+LDE
Sbjct: 55 GEGIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLS---LKKLDLLILDE 111
Query: 242 ADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274
A R+ + GF +I+ + DRQ +L S T
Sbjct: 112 AHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 5e-17
Identities = 58/191 (30%), Positives = 77/191 (40%), Gaps = 42/191 (21%)
Query: 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPML 180
T+ + L +LE + P AIQA A + G D + TG+GKT AFLLP L
Sbjct: 1 TTFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPAL 60
Query: 181 RHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLT-------- 232
+H+ + P G P L++ PT EL Q + R +L + I +T
Sbjct: 61 QHLLDFPRRKSG--PPRILILTPTRELAMQVADQAR--ELAKHTHLDIATITGGVAYMNH 116
Query: 233 ------------------------------RVTYLVLDEADRMFDMGFEPQITRIVQNIR 262
V L+LDEADRM DMGF I I R
Sbjct: 117 AEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETR 176
Query: 263 PDRQAVLFSPT 273
+Q +LFS T
Sbjct: 177 WRKQTLLFSAT 187
|
Length = 434 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 1e-16
Identities = 61/198 (30%), Positives = 87/198 (43%), Gaps = 49/198 (24%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
GL ILE + L +E P IQA +++G D + + +TGSGKT AF LP+L ++
Sbjct: 12 GLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNL--- 68
Query: 187 PPVVPGDDSPVGLVMAPTGELVRQ----------------------------QVRR---- 214
P +P LV+APT EL Q Q+R
Sbjct: 69 ---DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125
Query: 215 --------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQ 266
GR++D L + + ++ L+ LVLDEAD M MGF + I+ I Q
Sbjct: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSG---LVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182
Query: 267 AVLFSPTFPPRVEILARK 284
LFS T P + + R+
Sbjct: 183 TALFSATMPEAIRRITRR 200
|
Length = 629 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 3e-16
Identities = 69/245 (28%), Positives = 103/245 (42%), Gaps = 66/245 (26%)
Query: 101 PAYRKQLDLKIREKCAPKPIKTWR--------QTG--------LTTKILETFSKLNHENP 144
P K K R + PKP W+ Q G L +++ L
Sbjct: 51 PRAEKPKKDKPRRERKPKPASLWKLEDFVVEPQEGKTRFHDFNLAPELMHAIHDLGFPYC 110
Query: 145 VAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGD---DSPVGLVM 201
IQA ++G D++ +TG+GKT AFL+ ++ + + PP P + P L++
Sbjct: 111 TPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPP--PKERYMGEPRALII 168
Query: 202 APTGELVRQ---------------------------QVRR-------------GRMIDLL 221
APT ELV Q Q+++ GR++D
Sbjct: 169 APTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDF- 227
Query: 222 CKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP--DRQAVLFSPTFPPRVE 279
N +L V +VLDEADRM DMGF PQ+ +I++ +RQ +LFS TF V
Sbjct: 228 --NQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVM 285
Query: 280 ILARK 284
LA++
Sbjct: 286 NLAKQ 290
|
Length = 475 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 5e-15
Identities = 61/205 (29%), Positives = 82/205 (40%), Gaps = 59/205 (28%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
L +++E K N IQA A L ++G D +TG+GKT+AFL ++
Sbjct: 14 ALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSH 73
Query: 187 P-PVVPGDDSPVGLVMAPTGELVRQ-------------------------QVRR------ 214
P P + P L+MAPT EL Q +
Sbjct: 74 PAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESG 133
Query: 215 --------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIR---- 262
GR+ID K NL + +VLDEADRMFD+GF +++IR
Sbjct: 134 VDILIGTTGRLIDYA-KQN--HINLGAIQVVVLDEADRMFDLGF-------IKDIRWLFR 183
Query: 263 --PD---RQAVLFSPTFPPRVEILA 282
P R +LFS T RV LA
Sbjct: 184 RMPPANQRLNMLFSATLSYRVRELA 208
|
Length = 423 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 1e-11
Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 48/180 (26%)
Query: 147 IQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVV---PGDDSPVGLVMAP 203
IQA + + G D +TG+GKTLAFL+ ++ + +P + P D P L++AP
Sbjct: 35 IQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPED--PRALILAP 92
Query: 204 TGELV------------------------------RQQVRRG---------RMIDLLCKN 224
T EL R+ +++G R+ID + ++
Sbjct: 93 TRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQH 152
Query: 225 GVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI--RPDRQAVLFSPTFPPRVEILA 282
K+ +L VLDEADRMFD+GF I +++ + R RQ +LFS T RV LA
Sbjct: 153 --KVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELA 210
|
Length = 572 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 46/196 (23%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
L +L E P AIQ I+ G D++ ++G+GKT F++ L+ I
Sbjct: 34 KLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLI--D 91
Query: 187 PPVVPGDDSPVGLVMAPTGELVRQQVRR-----GRMIDLLC----------------KNG 225
+ + L++APT EL QQ+++ G + + C K G
Sbjct: 92 YDLN----ACQALILAPTRELA-QQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAG 146
Query: 226 VKIT----------------NLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269
V + + + +LDEAD M GF+ QI + + + PD Q L
Sbjct: 147 VHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVAL 206
Query: 270 FSPTFPPRVEILARKT 285
FS T P EIL T
Sbjct: 207 FSATMPN--EILELTT 220
|
Length = 401 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 9e-08
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQS---WLKSCAFRFISEENAIYATD 348
IA V +RGLD K+++ VINFD PN EDYVH ++ K ++ F++ + A D
Sbjct: 432 IATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARD 491
Query: 349 LVKAFELSELVVRDDLKAVADS 370
LVK ++ V +L+ +++
Sbjct: 492 LVKVLREAKQPVPPELEKLSNE 513
|
Length = 545 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 131 KILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVV 190
+ K E + Q A LI G + V T TGSGKT +FLLP+L H+ P
Sbjct: 58 SLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP--- 114
Query: 191 PGDDSPVGLVMAPTGELVRQQVRRGRMI 218
S L++ PT L Q R R +
Sbjct: 115 ----SARALLLYPTNALANDQAERLREL 138
|
Length = 851 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R L + K + +A V ARGLD ++ VIN+D P D EDYVH
Sbjct: 312 RDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVH 359
|
Length = 513 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 6e-06
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 277 RVEILARKTN-VCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R ++L R N C++ +A V ARGLD K LE VIN++ D E +VH
Sbjct: 281 RDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVH 328
|
Length = 460 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
IA V ARGLD + + LV+N+D P D E YVH
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVH 331
|
Length = 629 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A + ARGLD +EL V+N++ PN EDYVH
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVH 331
|
Length = 456 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R EIL + + +A V RG+D ++ LVIN+D P + Y+
Sbjct: 22 REEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVINYDLPWNPASYIQ 69
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A V ARGL + V N+D P+D EDYVH
Sbjct: 310 VATDVAARGLHIPAVTHVFNYDLPDDCEDYVH 341
|
Length = 423 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 494 | |||
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 100.0 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 100.0 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.97 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.96 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.96 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.96 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.96 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.96 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.96 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.96 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.95 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.95 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.95 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.95 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.95 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.94 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.94 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.94 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.93 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.93 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.92 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.91 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.9 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.9 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.9 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.89 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.89 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.89 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.89 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.89 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.88 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.87 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.87 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.86 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.86 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.86 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.86 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.84 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.84 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.81 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.78 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.72 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.72 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 99.71 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.69 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.68 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.67 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.67 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.66 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 99.66 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.64 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.6 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.59 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.57 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.54 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.53 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 99.48 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.48 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.47 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.46 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.46 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.37 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.34 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 99.32 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 99.32 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.32 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.31 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 99.29 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.28 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 99.28 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.26 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.26 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 99.25 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.17 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.1 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 99.09 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 99.08 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 99.08 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.07 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.07 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 99.06 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.05 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 98.94 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 98.87 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 98.78 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 98.73 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.7 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 98.66 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 98.64 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 98.58 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.57 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 98.54 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 98.45 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 98.41 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.41 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 98.33 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 98.32 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 98.29 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.19 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.19 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 98.17 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 98.15 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 98.11 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 97.96 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 97.9 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 97.88 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 97.86 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 97.79 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 97.78 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 97.61 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 97.59 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 97.57 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 97.48 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 97.46 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 97.43 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 97.42 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 97.4 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 97.39 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 97.38 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 97.29 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 97.26 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 97.25 | |
| PRK06526 | 254 | transposase; Provisional | 97.24 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 97.24 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 97.16 | |
| PRK08181 | 269 | transposase; Validated | 97.13 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 97.04 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 97.0 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 97.0 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 96.98 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 96.97 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 96.97 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 96.9 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 96.84 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 96.8 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 96.78 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 96.76 | |
| PRK08116 | 268 | hypothetical protein; Validated | 96.76 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 96.75 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 96.74 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 96.73 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 96.68 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 96.63 | |
| PRK12377 | 248 | putative replication protein; Provisional | 96.6 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 96.57 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 96.53 | |
| PRK08727 | 233 | hypothetical protein; Validated | 96.52 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 96.5 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 96.5 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 96.47 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 96.42 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 96.25 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 96.24 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 96.22 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 96.21 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 96.16 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 96.14 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 96.05 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 96.02 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 96.02 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 96.02 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 96.01 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 96.0 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 95.99 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 95.99 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 95.95 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 95.92 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 95.92 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 95.87 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 95.85 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 95.82 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 95.78 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 95.77 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 95.77 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 95.73 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.71 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 95.69 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 95.59 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 95.57 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 95.54 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 95.53 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 95.48 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 95.47 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 95.44 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 95.41 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 95.37 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 95.35 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 95.34 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 95.28 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 95.22 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 95.2 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 95.15 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 95.11 | |
| PF13173 | 128 | AAA_14: AAA domain | 95.07 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 94.98 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 94.93 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 94.77 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 94.69 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 94.55 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 94.52 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 94.5 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 94.5 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 94.39 | |
| PRK06620 | 214 | hypothetical protein; Validated | 94.32 | |
| TIGR00708 | 173 | cobA cob(I)alamin adenosyltransferase. Alternate n | 94.29 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 94.28 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 94.26 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 94.22 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 94.17 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 94.15 | |
| KOG0738 | 491 | consensus AAA+-type ATPase [Posttranslational modi | 94.11 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 94.07 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 94.05 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 93.93 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 93.93 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 93.91 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 93.9 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 93.85 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 93.84 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 93.84 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 93.74 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 93.65 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 93.53 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 93.49 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 93.47 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 93.43 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 93.36 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 93.34 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 93.26 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 93.26 | |
| PRK05986 | 191 | cob(I)alamin adenolsyltransferase/cobinamide ATP-d | 93.19 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 93.17 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 93.15 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 93.12 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 93.1 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 93.05 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 93.04 | |
| PF05729 | 166 | NACHT: NACHT domain | 93.01 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 92.99 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 92.99 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 92.98 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 92.97 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 92.97 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 92.95 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 92.87 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 92.86 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 92.69 | |
| KOG0745 | 564 | consensus Putative ATP-dependent Clp-type protease | 92.62 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 92.58 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 92.57 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 92.53 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 92.49 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 92.44 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 92.44 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 92.42 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 92.42 | |
| PF03796 | 259 | DnaB_C: DnaB-like helicase C terminal domain; Inte | 92.4 | |
| PF05707 | 193 | Zot: Zonular occludens toxin (Zot); InterPro: IPR0 | 92.36 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 92.23 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 92.18 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 92.12 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 92.1 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 92.09 | |
| PRK09087 | 226 | hypothetical protein; Validated | 92.09 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 91.93 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 91.92 | |
| PRK13764 | 602 | ATPase; Provisional | 91.89 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 91.88 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 91.8 | |
| KOG2543 | 438 | consensus Origin recognition complex, subunit 5 [R | 91.7 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 91.68 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 91.62 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 91.58 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 91.51 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 91.4 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 91.31 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 91.26 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 91.22 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 91.2 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 91.18 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 91.18 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 91.16 | |
| KOG0729 | 435 | consensus 26S proteasome regulatory complex, ATPas | 91.15 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 91.12 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 91.1 | |
| KOG1131 | 755 | consensus RNA polymerase II transcription initiati | 91.09 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 91.08 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 91.08 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 91.07 | |
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 90.94 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 90.85 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 90.84 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 90.8 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 90.77 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 90.75 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 90.61 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 90.6 | |
| PHA02244 | 383 | ATPase-like protein | 90.53 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 90.52 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 90.49 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 90.46 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 90.37 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 90.35 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 90.35 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 90.34 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 90.24 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 90.23 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 90.1 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 90.05 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 89.98 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 89.95 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 89.9 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 89.88 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 89.87 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 89.84 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 89.79 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 89.66 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 89.54 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 89.33 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 89.26 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 89.18 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 89.17 | |
| KOG0990 | 360 | consensus Replication factor C, subunit RFC5 [Repl | 89.17 | |
| COG1702 | 348 | PhoH Phosphate starvation-inducible protein PhoH, | 89.14 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 89.14 | |
| PF03969 | 362 | AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 | 89.14 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 89.11 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 89.09 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 89.02 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 89.01 | |
| KOG2035 | 351 | consensus Replication factor C, subunit RFC3 [Cell | 88.88 | |
| cd01126 | 384 | TraG_VirD4 The TraG/TraD/VirD4 family are bacteria | 88.86 | |
| PF02534 | 469 | T4SS-DNA_transf: Type IV secretory system Conjugat | 88.85 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 88.8 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 88.76 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 88.74 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 88.62 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 88.41 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 88.36 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 88.34 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 88.33 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 88.31 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 88.14 | |
| KOG2170 | 344 | consensus ATPase of the AAA+ superfamily [General | 88.13 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 87.98 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 87.98 | |
| PF12846 | 304 | AAA_10: AAA-like domain | 87.84 | |
| TIGR01547 | 396 | phage_term_2 phage terminase, large subunit, PBSX | 87.68 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 87.67 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 87.63 | |
| PF02572 | 172 | CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase | 87.58 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 87.54 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 87.52 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 87.49 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 87.47 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 87.42 | |
| PHA03311 | 828 | helicase-primase subunit BBLF4; Provisional | 87.39 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 87.35 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 87.25 | |
| KOG1133 | 821 | consensus Helicase of the DEAD superfamily [Replic | 87.2 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 87.13 | |
| TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family | 86.98 | |
| KOG0740 | 428 | consensus AAA+-type ATPase [Posttranslational modi | 86.94 | |
| COG2109 | 198 | BtuR ATP:corrinoid adenosyltransferase [Coenzyme m | 86.9 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 86.89 | |
| PRK13897 | 606 | type IV secretion system component VirD4; Provisio | 86.83 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 86.79 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 86.75 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 86.75 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 86.58 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 86.51 | |
| COG0630 | 312 | VirB11 Type IV secretory pathway, VirB11 component | 86.47 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 86.39 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 86.39 | |
| COG4185 | 187 | Uncharacterized protein conserved in bacteria [Fun | 86.38 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 86.22 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 86.2 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 86.09 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 86.07 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 85.97 | |
| PF14516 | 331 | AAA_35: AAA-like domain | 85.95 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 85.91 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 85.79 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 85.7 | |
| TIGR03819 | 340 | heli_sec_ATPase helicase/secretion neighborhood AT | 85.68 | |
| PRK13850 | 670 | type IV secretion system protein VirD4; Provisiona | 85.61 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 85.56 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 85.42 | |
| PHA00350 | 399 | putative assembly protein | 85.38 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 85.38 | |
| PRK13880 | 636 | conjugal transfer coupling protein TraG; Provision | 85.2 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 85.16 | |
| PTZ00293 | 211 | thymidine kinase; Provisional | 85.11 | |
| PRK08506 | 472 | replicative DNA helicase; Provisional | 85.0 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 84.99 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 84.84 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 84.83 | |
| cd01127 | 410 | TrwB Bacterial conjugation protein TrwB, ATP bindi | 84.75 | |
| PRK05595 | 444 | replicative DNA helicase; Provisional | 84.58 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 84.5 | |
| PRK08760 | 476 | replicative DNA helicase; Provisional | 84.48 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 84.3 | |
| PF10412 | 386 | TrwB_AAD_bind: Type IV secretion-system coupling p | 84.29 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 84.28 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 84.2 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (pr | 84.11 | |
| PRK07004 | 460 | replicative DNA helicase; Provisional | 84.06 | |
| COG2874 | 235 | FlaH Predicted ATPases involved in biogenesis of a | 84.05 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 84.01 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 83.94 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 83.9 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 83.72 | |
| PRK13876 | 663 | conjugal transfer coupling protein TraG; Provision | 83.69 | |
| PRK05748 | 448 | replicative DNA helicase; Provisional | 83.69 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 83.62 | |
| PHA00012 | 361 | I assembly protein | 83.6 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 83.6 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 83.24 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 83.23 | |
| TIGR00665 | 434 | DnaB replicative DNA helicase. This model describe | 83.22 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 82.99 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 82.7 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 82.67 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 82.62 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 82.53 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 82.38 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 82.35 | |
| KOG2228 | 408 | consensus Origin recognition complex, subunit 4 [R | 81.91 | |
| PRK06321 | 472 | replicative DNA helicase; Provisional | 81.83 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 81.75 | |
| TIGR02767 | 623 | TraG-Ti Ti-type conjugative transfer system protie | 81.41 | |
| PRK08840 | 464 | replicative DNA helicase; Provisional | 81.32 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 81.28 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 81.27 | |
| PRK05636 | 505 | replicative DNA helicase; Provisional | 81.25 | |
| PRK07414 | 178 | cob(I)yrinic acid a,c-diamide adenosyltransferase; | 81.23 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 81.13 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 81.06 | |
| COG5008 | 375 | PilU Tfp pilus assembly protein, ATPase PilU [Cell | 81.01 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 80.84 | |
| PF01443 | 234 | Viral_helicase1: Viral (Superfamily 1) RNA helicas | 80.8 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 80.72 | |
| KOG0732 | 1080 | consensus AAA+-type ATPase containing the bromodom | 80.52 | |
| PRK06904 | 472 | replicative DNA helicase; Validated | 80.51 | |
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 80.48 | |
| PRK13822 | 641 | conjugal transfer coupling protein TraG; Provision | 80.34 | |
| cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in | 80.29 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 80.26 | |
| COG1435 | 201 | Tdk Thymidine kinase [Nucleotide transport and met | 80.14 | |
| PF02456 | 369 | Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR | 80.03 |
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-77 Score=653.60 Aligned_cols=464 Identities=45% Similarity=0.663 Sum_probs=401.6
Q ss_pred CCCCCCCchhHHhhccccccccCCCc--------------------ccccCccCCCC----CC-----CCcchHHHHHHH
Q 042373 11 VVQIEIDPLDAFMNDMECSFAEHPNN--------------------CFRLGRRLPAE----DS-----HSASDYELFMKR 61 (494)
Q Consensus 11 ~~~~e~d~ld~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~----~~-----d~~~~~~~~~~~ 61 (494)
..+++.||+|+||..+......+... .+..|..+... |. +++.+...+++.
T Consensus 223 ~~dd~~d~ld~~m~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~g~v~e~~~~~~D~~e~~~~~~~d~~~~~~~ 302 (997)
T KOG0334|consen 223 LVDDEEDPLDAFMEQMVGKVLAKFSNSSHSKAQVVEVSKDARKGLNPKLSGFVIEPGLVNGDNEEVELNGSFDNRNAAKN 302 (997)
T ss_pred ccccccchHHHHHHHHHHHHHHHhcCCCcccccccccchhhhccCCccccceeccCCcCCcchhhhhhccccchHHHHHH
Confidence 55788999999999887442211100 01234443321 11 111356667777
Q ss_pred HhhhhhccchhhhhcccchhcccccccccccchhhhhcCH----HHHhhcC-ceeccCCCCCCCCCcccCCCCHHHHHHH
Q 042373 62 AKKKKRDKNREIIKSKIKIDYQQLRKNFYTQAREITRMSP----AYRKQLD-LKIREKCAPKPIKTWRQTGLTTKILETF 136 (494)
Q Consensus 62 ~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~s~----~~r~~~~-i~v~g~~~P~pi~~f~~l~L~~~ll~~l 136 (494)
.+.+.++.+.. ++|+++.|.+|+||||.+.++++.|+. .||..+. |+|+|..+|+||++|.++|++..|+..+
T Consensus 303 ~~~~~~~~~~~--~~~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tl 380 (997)
T KOG0334|consen 303 MNLKAKKNLIQ--VDHSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETL 380 (997)
T ss_pred hccccccceee--cccccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHH
Confidence 77777777777 999999999999999999999999988 7888888 9999999999999999999999999999
Q ss_pred HhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----
Q 042373 137 SKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----- 211 (494)
Q Consensus 137 ~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----- 211 (494)
+++||.+|||||.+|||+||+|||||++|.||||||++|+||++.|+..+++...++ ||.+|||+||||||.||
T Consensus 381 kkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gd-GPi~li~aPtrela~QI~r~~~ 459 (997)
T KOG0334|consen 381 KKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGD-GPIALILAPTRELAMQIHREVR 459 (997)
T ss_pred HHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCC-CceEEEEcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988888 99999999999999999
Q ss_pred ----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHH
Q 042373 212 ----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRI 257 (494)
Q Consensus 212 ----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~I 257 (494)
|||||++|+++.+..++.+|+++.|||+||||+|++|||.|++..|
T Consensus 460 kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~I 539 (997)
T KOG0334|consen 460 KFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRI 539 (997)
T ss_pred HHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchH
Confidence 8999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------------------------
Q 042373 258 VQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------------------------- 284 (494)
Q Consensus 258 l~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------------------------- 284 (494)
++++++.+|+++||||||..++.+++.
T Consensus 540 i~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiF 619 (997)
T KOG0334|consen 540 LQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIF 619 (997)
T ss_pred HhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEE
Confidence 999999999999999999999999987
Q ss_pred -----------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHh
Q 042373 285 -----------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323 (494)
Q Consensus 285 -----------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvh 323 (494)
++.+++||||++++||||++++.+|||||+|+++++|+|
T Consensus 620 v~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvh 699 (997)
T KOG0334|consen 620 VDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVH 699 (997)
T ss_pred EcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHH
Confidence 789999999999999999999999999999999999999
Q ss_pred hhcc---CCCcceEEEEecccCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhcccccccCCc-cCCcccchhhHHH
Q 042373 324 HCCQ---SWLKSCAFRFISEENAIYATDLVKAFELSELVVRDDLKAVADSFIAKVNLGLGQVHGTG-HGGVALNLMKRRI 399 (494)
Q Consensus 324 R~GR---aGr~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~g~~~~~~~~ 399 (494)
|+|| +||+|.|++|+++.+..++.+|.++|+.+++++|..|+.|+..|..+.+.++...+++| |||+|+.|.+.++
T Consensus 700 R~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~f~~~~~~~~s~~~~~Gg~~G~g~~~~~~~~ 779 (997)
T KOG0334|consen 700 RVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSERFKAKQKAGGSQVHGGGGFGGKGLKFDEVEE 779 (997)
T ss_pred HhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHHHHhhhhcccccccccCcccCCcccccHHHH
Confidence 9999 77899999999999999999999999999999999999999999999999988887777 9999999998888
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCccccccccCCCC-CcchhhhHHHHHHHHHHhccCCCCCcchhhhhhccCCCCCCCCC
Q 042373 400 RRGKQLRKAQAKEYGFGEDKSDSEDVDEGTRKSGG-DISHQDSIAKIATIAAASNSKASASTPSLISVAQLLPNGGPSIP 478 (494)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (494)
+.....++++.+.+|+.+...+++....-.+..+. ..+.+.-...+..+. +.++.|.+.++|++.+
T Consensus 780 ~~~~~~ke~q~~~~g~~~~d~e~d~~~~~~~~~~~~~~s~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 846 (997)
T KOG0334|consen 780 ELRQERKEAQRKDLGLKEGDNESDIEVDNSDKASQPRESIQNPTFLQVEAE-------------SKTQEKTLLLGGELNA 846 (997)
T ss_pred HHHHHHhhccccCcCCCCCCcccccccccchhhccccccccCccccccccc-------------ccchhhhhhccccccc
Confidence 88888899999999998877776655544444443 333333222222221 1177788888888888
Q ss_pred CCcccccccCCC
Q 042373 479 LPGVLGLSVPGG 490 (494)
Q Consensus 479 ~~~~~~~~~~~~ 490 (494)
.+....+.+||+
T Consensus 847 ~~~~~~~~~~~~ 858 (997)
T KOG0334|consen 847 ARPMVPYPVPGT 858 (997)
T ss_pred cccccccccccc
Confidence 888888888877
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-71 Score=563.50 Aligned_cols=324 Identities=38% Similarity=0.645 Sum_probs=298.6
Q ss_pred hhhhccchhhhhcccchhcccccccccccchhhhhcCH----HHHhhcCceeccCCCCCCCCCcccCCCCHHHHHHHHhC
Q 042373 64 KKKRDKNREIIKSKIKIDYQQLRKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKL 139 (494)
Q Consensus 64 ~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~s~----~~r~~~~i~v~g~~~P~pi~~f~~l~L~~~ll~~l~~~ 139 (494)
|++.+.+++ ++|++|+|++|+|+||.++.+|..++. .+|..++++|.|...|+|+++|+++|+++.|+.++++.
T Consensus 164 kr~idpl~~--idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~ 241 (731)
T KOG0339|consen 164 KRQIDPLPP--IDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKS 241 (731)
T ss_pred cccCCCCCC--cchhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhh
Confidence 455677777 999999999999999999999999887 89999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--------
Q 042373 140 NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------- 211 (494)
Q Consensus 140 g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------- 211 (494)
.|++|||||++++|..++|||||++|.||||||.||++|++.|++.++.+.+++ +|++||+|||||||.||
T Consensus 242 Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~-gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 242 EYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGE-GPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred hcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCC-CCeEEEEeccHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999888777 99999999999999999
Q ss_pred -------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHh
Q 042373 212 -------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQN 260 (494)
Q Consensus 212 -------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~ 260 (494)
||||||+|++.. +.++|++++||||||||+|++|||+++|+.|..+
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm---Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~h 397 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM---KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQH 397 (731)
T ss_pred hhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh---hcccceeeeEEEEechhhhhccccHHHHHHHHhh
Confidence 899999999987 4579999999999999999999999999999999
Q ss_pred hcCCCcEEEecCCCChHHHHHHHh--------------------------------------------------------
Q 042373 261 IRPDRQAVLFSPTFPPRVEILARK-------------------------------------------------------- 284 (494)
Q Consensus 261 l~~~~Q~ilfSAT~~~~v~~l~~~-------------------------------------------------------- 284 (494)
++++||+|+|||||+..++.+++.
T Consensus 398 irpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTK 477 (731)
T KOG0339|consen 398 IRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTK 477 (731)
T ss_pred cCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEec
Confidence 999999999999999999999997
Q ss_pred --------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhc
Q 042373 285 --------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCC 326 (494)
Q Consensus 285 --------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~G 326 (494)
.+.++|||+||+++||+||+++..|||||+..+++.|+||+|
T Consensus 478 k~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrig 557 (731)
T KOG0339|consen 478 KADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIG 557 (731)
T ss_pred cCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhh
Confidence 567999999999999999999999999999999999999999
Q ss_pred c---CCCcceEEEEecccCHHHHHHHHHHHHhccCcchHHHHHHH--HHHHHH--HhcccccccCCccCCcccc
Q 042373 327 Q---SWLKSCAFRFISEENAIYATDLVKAFELSELVVRDDLKAVA--DSFIAK--VNLGLGQVHGTGHGGVALN 393 (494)
Q Consensus 327 R---aGr~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~~~~--~~~~~~--~~~~~~~~~~~~~~g~g~~ 393 (494)
| +|.+|.+||++++.+..++..|++.|+.++|.||+.|..|+ ..|... +..|.++....|.||+|+.
T Consensus 558 rtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk~s~fr~~r~~~g~gk~~~~~~gglgyr 631 (731)
T KOG0339|consen 558 RTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMKSSWFRSSRFGRGGGKKGTGGGGGLGYR 631 (731)
T ss_pred hcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHhhhhhhhhhhccCCCCCCCCCCCCCcccc
Confidence 9 55589999999999999999999999999999999997765 444443 3444444444566677764
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=522.04 Aligned_cols=297 Identities=35% Similarity=0.579 Sum_probs=278.5
Q ss_pred hcccchhcccccccccccchhhhhcCH----HHHhhcC-ceecc------CCCCCCCCCccc-CCCCHHHHHHHHhCCCC
Q 042373 75 KSKIKIDYQQLRKNFYTQAREITRMSP----AYRKQLD-LKIRE------KCAPKPIKTWRQ-TGLTTKILETFSKLNHE 142 (494)
Q Consensus 75 ~~~~~~~~~~~~k~~~~~~~~~~~~s~----~~r~~~~-i~v~g------~~~P~pi~~f~~-l~L~~~ll~~l~~~g~~ 142 (494)
...+|..++|++||||.++.+.++||+ ++|++.. |.+.. ..+|+|..+|++ |.-.+++++.+++.||.
T Consensus 162 e~~kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFq 241 (629)
T KOG0336|consen 162 EKFKWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQ 241 (629)
T ss_pred hhcccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCC
Confidence 556788999999999999999999998 6777655 76643 358999999987 57889999999999999
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----------
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------- 211 (494)
+|||||.|+||.+|+|.|+|++|+||+|||++||+|-+.|+..++.......+|.+|+++|||||+.|+
T Consensus 242 KPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng 321 (629)
T KOG0336|consen 242 KPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNG 321 (629)
T ss_pred CCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcC
Confidence 999999999999999999999999999999999999999999887666666799999999999999998
Q ss_pred ---------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCC
Q 042373 212 ---------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPD 264 (494)
Q Consensus 212 ---------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~ 264 (494)
+|||||.++... +.++|..|+||||||||+|+||||+++|++|+-.++++
T Consensus 322 ~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~---n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPD 398 (629)
T KOG0336|consen 322 LKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD---NVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPD 398 (629)
T ss_pred cceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc---CeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCc
Confidence 899999999887 46799999999999999999999999999999999999
Q ss_pred CcEEEecCCCChHHHHHHHh------------------------------------------------------------
Q 042373 265 RQAVLFSPTFPPRVEILARK------------------------------------------------------------ 284 (494)
Q Consensus 265 ~Q~ilfSAT~~~~v~~l~~~------------------------------------------------------------ 284 (494)
||++|.|||||+.|..|+.+
T Consensus 399 RqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~A 478 (629)
T KOG0336|consen 399 RQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMA 478 (629)
T ss_pred ceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhh
Confidence 99999999999999999987
Q ss_pred ----------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhcc---
Q 042373 285 ----------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ--- 327 (494)
Q Consensus 285 ----------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR--- 327 (494)
+|.++||||||+++||||+++|.||+|||+|.+++.||||+||
T Consensus 479 D~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGR 558 (629)
T KOG0336|consen 479 DHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGR 558 (629)
T ss_pred hhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhccccc
Confidence 8999999999999999999999999999999999999999988
Q ss_pred CCCcceEEEEecccCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Q 042373 328 SWLKSCAFRFISEENAIYATDLVKAFELSELVVRDDLKAVADSFIAK 374 (494)
Q Consensus 328 aGr~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~ 374 (494)
+||+|.+++|++.++...+..|.++|+.++|+||++|..+|++|..+
T Consensus 559 aGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAeryk~~ 605 (629)
T KOG0336|consen 559 AGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERYKLK 605 (629)
T ss_pred CCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHhh
Confidence 88899999999999999999999999999999999999999999876
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-63 Score=523.14 Aligned_cols=287 Identities=42% Similarity=0.681 Sum_probs=255.5
Q ss_pred hhcccccccccccchhhhhcCH----HHHhhcCceeccCC-CCCCCCCcc-----------------------------c
Q 042373 80 IDYQQLRKNFYTQAREITRMSP----AYRKQLDLKIREKC-APKPIKTWR-----------------------------Q 125 (494)
Q Consensus 80 ~~~~~~~k~~~~~~~~~~~~s~----~~r~~~~i~v~g~~-~P~pi~~f~-----------------------------~ 125 (494)
.++.++.++||........+.. .+++...+.+++.+ +|.|+.+|+ .
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 95 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQE 95 (519)
T ss_pred cccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhc
Confidence 4677788888887766554433 55666778887766 787776654 4
Q ss_pred CCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHc-CCCCCCCCCCCeEEEEccc
Q 042373 126 TGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWE-QPPVVPGDDSPVGLVMAPT 204 (494)
Q Consensus 126 l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~-~~~~~~~~~~p~aLIl~PT 204 (494)
++|++.++..|+..||+.|||||+++||.+|+|||++++|.|||||||+|+||++.|+.. +.....+ ++|++|||+||
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~-~~P~vLVL~PT 174 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRG-DGPIVLVLAPT 174 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCC-CCCeEEEEcCc
Confidence 556677777788999999999999999999999999999999999999999999999998 4443333 49999999999
Q ss_pred hhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchh
Q 042373 205 GELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRM 245 (494)
Q Consensus 205 reLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~m 245 (494)
||||.|+ +|||||+|++..+ .++|++|+|+||||||+|
T Consensus 175 RELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g---~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 175 RELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEG---SLNLSRVTYLVLDEADRM 251 (519)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcC---CccccceeEEEeccHHhh
Confidence 9999998 8999999999985 458999999999999999
Q ss_pred cccCChhHHHHHHHhh-cCCCcEEEecCCCChHHHHHHHh----------------------------------------
Q 042373 246 FDMGFEPQITRIVQNI-RPDRQAVLFSPTFPPRVEILARK---------------------------------------- 284 (494)
Q Consensus 246 l~~gf~~~i~~Il~~l-~~~~Q~ilfSAT~~~~v~~l~~~---------------------------------------- 284 (494)
++|||+++|+.|+.++ ++.+|+++||||||.++..++..
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~ 331 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGK 331 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHH
Confidence 9999999999999999 67789999999999999999987
Q ss_pred ---------------------------------------------------------cCCccceeeccccccCCCCCCce
Q 042373 285 ---------------------------------------------------------TNVCNLSIANSVRARGLDEKELE 307 (494)
Q Consensus 285 ---------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~ 307 (494)
+|++.||||||||+||||||+|+
T Consensus 332 lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~ 411 (519)
T KOG0331|consen 332 LLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVD 411 (519)
T ss_pred HHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcccc
Confidence 89999999999999999999999
Q ss_pred EEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 042373 308 LVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELVVRDDLKAVADS 370 (494)
Q Consensus 308 ~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~~~~~~ 370 (494)
+|||||+|.+.++||||+||.|| +|.+++|++..+...+..+.+.++..+|.+|+.|..++..
T Consensus 412 lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~ 477 (519)
T KOG0331|consen 412 LVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARV 477 (519)
T ss_pred EEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhh
Confidence 99999999999999999999655 9999999999999999999999999999999999888654
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=496.92 Aligned_cols=317 Identities=33% Similarity=0.541 Sum_probs=289.2
Q ss_pred cchhcccccccccccchhhhhcCH----HHHhhcCceeccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHH
Q 042373 78 IKIDYQQLRKNFYTQAREITRMSP----AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASA 153 (494)
Q Consensus 78 ~~~~~~~~~k~~~~~~~~~~~~s~----~~r~~~~i~v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip 153 (494)
..|.|..--+..|.++..+.+||+ ..|+.+.|.|.|.++|+||.+|.++.++..+++.|++.|+..|||||.|.+|
T Consensus 123 kGi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlP 202 (610)
T KOG0341|consen 123 KGITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLP 202 (610)
T ss_pred CCCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcc
Confidence 467899999999999999999998 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCC---CCCCCCCCCeEEEEccchhHHHhh-------------------
Q 042373 154 LIISGLDSVAITETGSGKTLAFLLPMLRHIWEQP---PVVPGDDSPVGLVMAPTGELVRQQ------------------- 211 (494)
Q Consensus 154 ~il~grdvi~~a~TGSGKTlafllpil~~l~~~~---~~~~~~~~p~aLIl~PTreLa~Qi------------------- 211 (494)
.+++|||+|++|-||||||+.|+||++...+.+. +...++ ||.+|||||+||||.|+
T Consensus 203 vvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~E-GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~l 281 (610)
T KOG0341|consen 203 VVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGE-GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPEL 281 (610)
T ss_pred eEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCC-CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence 9999999999999999999999999999887654 333344 99999999999999997
Q ss_pred --------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCC
Q 042373 212 --------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDR 265 (494)
Q Consensus 212 --------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~ 265 (494)
+|||||.|+|.+ +.++|.-|+||++||||||+||||++.|+.|+.+++..|
T Consensus 282 Rs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K---K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QR 358 (610)
T KOG0341|consen 282 RSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK---KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQR 358 (610)
T ss_pred hhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH---hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhh
Confidence 799999999997 467899999999999999999999999999999999999
Q ss_pred cEEEecCCCChHHHHHHHh-------------------------------------------------------------
Q 042373 266 QAVLFSPTFPPRVEILARK------------------------------------------------------------- 284 (494)
Q Consensus 266 Q~ilfSAT~~~~v~~l~~~------------------------------------------------------------- 284 (494)
|+++||||||..++.+++.
T Consensus 359 QTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~Ih 438 (610)
T KOG0341|consen 359 QTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIH 438 (610)
T ss_pred heeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHH
Confidence 9999999999999999997
Q ss_pred ------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhcc---CCCc
Q 042373 285 ------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ---SWLK 331 (494)
Q Consensus 285 ------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR---aGr~ 331 (494)
.|+-+|||||||++.|||+|++.||||||+|..++.||||+|| .|++
T Consensus 439 EYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~ 518 (610)
T KOG0341|consen 439 EYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKT 518 (610)
T ss_pred HHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCc
Confidence 7899999999999999999999999999999999999999999 5568
Q ss_pred ceEEEEeccc-CHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhcccccccCCcc-CCcccchhhHH
Q 042373 332 SCAFRFISEE-NAIYATDLVKAFELSELVVRDDLKAVADSFIAKVNLGLGQVHGTGH-GGVALNLMKRR 398 (494)
Q Consensus 332 G~aitfv~~~-~~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~~~~~~~~-~g~g~~~~~~~ 398 (494)
|.+.||++.+ +...+-++..+|...+|.+|+.|..++.......-.+.+..+||.| ||.|+....+.
T Consensus 519 GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~~~E~~~~a~~~~~kGCayCgGLGHRItdCP 587 (610)
T KOG0341|consen 519 GIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAGPMEEETIADAGGEKGCAYCGGLGHRITDCP 587 (610)
T ss_pred ceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCCCccccccccCCCccccccccCCCcccccCc
Confidence 8999999987 6778899999999999999999999987666543344455567766 89999887654
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-60 Score=515.69 Aligned_cols=351 Identities=28% Similarity=0.407 Sum_probs=306.2
Q ss_pred CCCCCCCchhHHhhccccccccCCC--cccccCccCCCCCCCCcchHHHHHHHHhhhhhccchhhhhcccchhc-ccccc
Q 042373 11 VVQIEIDPLDAFMNDMECSFAEHPN--NCFRLGRRLPAEDSHSASDYELFMKRAKKKKRDKNREIIKSKIKIDY-QQLRK 87 (494)
Q Consensus 11 ~~~~e~d~ld~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~k 87 (494)
..++++|+...|-.+.++.+..+.. .|.++|+++||++|||-+.-++..++.....+ .-.. ++|++.+| +++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~ 82 (518)
T PLN00206 6 CNPHEDDVVKERSIEQREALPGEPKCVVCGRYGEYICDETDDDICSLECKQALLRRVAK-SRVA--VGAPKPKRLPATDE 82 (518)
T ss_pred CCcccchhhhhhhHHhcCCCCCCceEEEecCccceeccCCCCccccHHHHHHHHHHHhh-ccCC--cCCCchhhcCCcCC
Confidence 4456677888888777776655443 47999999999999999988888777754322 2222 67777776 78899
Q ss_pred cccccchhhhh-cCH----HHHhhcCceeccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEE
Q 042373 88 NFYTQAREITR-MSP----AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSV 162 (494)
Q Consensus 88 ~~~~~~~~~~~-~s~----~~r~~~~i~v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi 162 (494)
+||....+... ++. .+|+.++|.+.|.++|.|+.+|++++|++.+++.|.++||..|||+|.++||.+++|+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dvi 162 (518)
T PLN00206 83 CFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLL 162 (518)
T ss_pred cCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEE
Confidence 99998777644 555 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCchhhhHHHHHHHHHcCCCCC-CCCCCCeEEEEccchhHHHhh------------------------------
Q 042373 163 AITETGSGKTLAFLLPMLRHIWEQPPVV-PGDDSPVGLVMAPTGELVRQQ------------------------------ 211 (494)
Q Consensus 163 ~~a~TGSGKTlafllpil~~l~~~~~~~-~~~~~p~aLIl~PTreLa~Qi------------------------------ 211 (494)
++||||||||++|++|++.++....... ....++++|||+||||||.|+
T Consensus 163 v~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~ 242 (518)
T PLN00206 163 VSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYR 242 (518)
T ss_pred EEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHH
Confidence 9999999999999999999987532211 122479999999999999986
Q ss_pred ---------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHH
Q 042373 212 ---------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 212 ---------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~ 282 (494)
+||++|.+++.+. .+.++++++|||||||+|+++||++++..|+..+ +.+|+++||||+++.++.++
T Consensus 243 l~~~~~IiV~TPgrL~~~l~~~---~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-~~~q~l~~SATl~~~v~~l~ 318 (518)
T PLN00206 243 IQQGVELIVGTPGRLIDLLSKH---DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-SQPQVLLFSATVSPEVEKFA 318 (518)
T ss_pred hcCCCCEEEECHHHHHHHHHcC---CccchheeEEEeecHHHHhhcchHHHHHHHHHhC-CCCcEEEEEeeCCHHHHHHH
Confidence 7999999999875 4579999999999999999999999999999988 57899999999999998877
Q ss_pred Hh------------------------------------------------------------------------------
Q 042373 283 RK------------------------------------------------------------------------------ 284 (494)
Q Consensus 283 ~~------------------------------------------------------------------------------ 284 (494)
..
T Consensus 319 ~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~ 398 (518)
T PLN00206 319 SSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSI 398 (518)
T ss_pred HHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEe
Confidence 65
Q ss_pred -----------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHH
Q 042373 285 -----------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAI 344 (494)
Q Consensus 285 -----------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~ 344 (494)
.|+++|||||++++||||+|+|++|||||+|.++.+|+||+||+|| .|.+++|+++++..
T Consensus 399 Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~ 478 (518)
T PLN00206 399 HGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRN 478 (518)
T ss_pred eCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHH
Confidence 7899999999999999999999999999999999999999999666 78899999999999
Q ss_pred HHHHHHHHHHhccCcchHHHHHHH
Q 042373 345 YATDLVKAFELSELVVRDDLKAVA 368 (494)
Q Consensus 345 ~~~~i~~~l~~~~~~vp~~l~~~~ 368 (494)
.+..+.+.|+.+++.+|++|..+.
T Consensus 479 ~~~~l~~~l~~~~~~vp~~l~~~~ 502 (518)
T PLN00206 479 LFPELVALLKSSGAAIPRELANSR 502 (518)
T ss_pred HHHHHHHHHHHcCCCCCHHHHhCh
Confidence 999999999999999999997765
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-60 Score=513.72 Aligned_cols=317 Identities=41% Similarity=0.638 Sum_probs=281.9
Q ss_pred ccchhhhhcccchhcccccccccccchhhhhcCH----HHHhhcCcee-ccCCCCCCCCCcccCCCCHHHHHHHHhCCCC
Q 042373 68 DKNREIIKSKIKIDYQQLRKNFYTQAREITRMSP----AYRKQLDLKI-REKCAPKPIKTWRQTGLTTKILETFSKLNHE 142 (494)
Q Consensus 68 ~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~s~----~~r~~~~i~v-~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~ 142 (494)
+.+.. ++|+..++.+|+|+||.++..+..++. .+++..+|.+ .|.++|+|+.+|++++|++.|++.|.++||.
T Consensus 74 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~ 151 (545)
T PTZ00110 74 KRLQP--IDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFT 151 (545)
T ss_pred cccCC--CCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCC
Confidence 45556 888888999999999999999998888 6788888876 7999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----------
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------- 211 (494)
+|||||.++||.+++|+|+|++||||||||++|+||++.++..++....+ .+|++|||+||||||.|+
T Consensus 152 ~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~-~gp~~LIL~PTreLa~Qi~~~~~~~~~~~ 230 (545)
T PTZ00110 152 EPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYG-DGPIVLVLAPTRELAEQIREQCNKFGASS 230 (545)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCC-CCcEEEEECChHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999876543333 389999999999999997
Q ss_pred ----------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcC
Q 042373 212 ----------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP 263 (494)
Q Consensus 212 ----------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~ 263 (494)
+||++|++++..+ ..+|+++++|||||||+|++++|.+++..|+..+++
T Consensus 231 ~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~---~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~ 307 (545)
T PTZ00110 231 KIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN---VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 307 (545)
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC---CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCC
Confidence 7999999999864 457999999999999999999999999999999999
Q ss_pred CCcEEEecCCCChHHHHHHHh-----------------------------------------------------------
Q 042373 264 DRQAVLFSPTFPPRVEILARK----------------------------------------------------------- 284 (494)
Q Consensus 264 ~~Q~ilfSAT~~~~v~~l~~~----------------------------------------------------------- 284 (494)
++|+++||||+|..++.+++.
T Consensus 308 ~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~ 387 (545)
T PTZ00110 308 DRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETK 387 (545)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecCh
Confidence 999999999999998877654
Q ss_pred -------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhcc
Q 042373 285 -------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ 327 (494)
Q Consensus 285 -------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR 327 (494)
.|.++|||||++++|||||++|++|||||+|.++++|+||+||
T Consensus 388 ~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGR 467 (545)
T PTZ00110 388 KGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGR 467 (545)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcc
Confidence 6899999999999999999999999999999999999999999
Q ss_pred CC---CcceEEEEecccCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhcccccccCCccCCcccch
Q 042373 328 SW---LKSCAFRFISEENAIYATDLVKAFELSELVVRDDLKAVADSFIAKVNLGLGQVHGTGHGGVALNL 394 (494)
Q Consensus 328 aG---r~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~ 394 (494)
+| +.|.|++|+++++...+..|.+.|+.++|+||++|.+++.... .++.....+++++.+..+
T Consensus 468 tGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~ 533 (545)
T PTZ00110 468 TGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERS----NGTERRRWGGYGRFSNNV 533 (545)
T ss_pred cccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHhc----CCcccccccCCCCCCCCC
Confidence 55 4789999999999999999999999999999999999976432 233333445555544443
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=462.59 Aligned_cols=246 Identities=30% Similarity=0.508 Sum_probs=226.5
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
..+|.++|+++.++++++..||..||+||+++||.++.|+|||+.|.||||||.+|+||++++++.++. .+.+|
T Consensus 60 ~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~------~~~~l 133 (476)
T KOG0330|consen 60 FKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK------LFFAL 133 (476)
T ss_pred hcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC------CceEE
Confidence 578999999999999999999999999999999999999999999999999999999999999998654 58999
Q ss_pred EEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEc
Q 042373 200 VMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLD 240 (494)
Q Consensus 200 Il~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlD 240 (494)
||+||||||.|| +|||||++++.+. +.++|.+++|+|+|
T Consensus 134 VLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~T--kgf~le~lk~LVlD 211 (476)
T KOG0330|consen 134 VLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENT--KGFSLEQLKFLVLD 211 (476)
T ss_pred EecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhc--cCccHHHhHHHhhc
Confidence 999999999998 8999999999965 34789999999999
Q ss_pred ccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh------------------------------------
Q 042373 241 EADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------------ 284 (494)
Q Consensus 241 EaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------ 284 (494)
|||++++|.|.+.+.+|++.+|..+|+++||||||..+.++.+.
T Consensus 212 EADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yL 291 (476)
T KOG0330|consen 212 EADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYL 291 (476)
T ss_pred hHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhH
Confidence 99999999999999999999999999999999999999998875
Q ss_pred --------------------------------------------------------cCCccceeeccccccCCCCCCceE
Q 042373 285 --------------------------------------------------------TNVCNLSIANSVRARGLDEKELEL 308 (494)
Q Consensus 285 --------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~ 308 (494)
.|.++|||||||++||||||.|++
T Consensus 292 V~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~ 371 (476)
T KOG0330|consen 292 VYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDV 371 (476)
T ss_pred HHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceE
Confidence 799999999999999999999999
Q ss_pred EEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHHHHHHHhccCc--chHHH-HHHHHHHHH
Q 042373 309 VINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDLVKAFELSELV--VRDDL-KAVADSFIA 373 (494)
Q Consensus 309 VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~~~l~~~~~~--vp~~l-~~~~~~~~~ 373 (494)
|||||+|.+..+||||+|| +||.|.+|+||+..|...+..|+..+...... ++.+. ..+.+++.+
T Consensus 372 VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~~~~~~l~erv~e 442 (476)
T KOG0330|consen 372 VVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDKNEVMSLNERVAE 442 (476)
T ss_pred EEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHH
Confidence 9999999999999999999 89999999999999999999999999876644 55433 344444433
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-56 Score=458.89 Aligned_cols=229 Identities=32% Similarity=0.491 Sum_probs=216.9
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
..+|.+++|+.+|++++..+||..|||||..+||..+.|+|+++||-||||||.||+||+|.+++..+.... ..++|
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~---~TRVL 256 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVA---ATRVL 256 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCc---ceeEE
Confidence 368999999999999999999999999999999999999999999999999999999999999998775322 56899
Q ss_pred EEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEc
Q 042373 200 VMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLD 240 (494)
Q Consensus 200 Il~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlD 240 (494)
||||||||+.|+ +|||||+|+|.+.. .++|++|.++|+|
T Consensus 257 VL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~--sf~ldsiEVLvlD 334 (691)
T KOG0338|consen 257 VLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSP--SFNLDSIEVLVLD 334 (691)
T ss_pred EEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCC--CccccceeEEEec
Confidence 999999999998 89999999998764 4789999999999
Q ss_pred ccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh------------------------------------
Q 042373 241 EADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------------ 284 (494)
Q Consensus 241 EaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------ 284 (494)
||||||+.||.+++..|++.++..||++||||||+.+|..|+.-
T Consensus 335 EADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRe 414 (691)
T KOG0338|consen 335 EADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDRE 414 (691)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccH
Confidence 99999999999999999999999999999999999999999875
Q ss_pred -----------------------------------------------------------cCCccceeeccccccCCCCCC
Q 042373 285 -----------------------------------------------------------TNVCNLSIANSVRARGLDEKE 305 (494)
Q Consensus 285 -----------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~ 305 (494)
.++++||||||+++|||||++
T Consensus 415 a~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~g 494 (691)
T KOG0338|consen 415 AMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEG 494 (691)
T ss_pred HHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccc
Confidence 789999999999999999999
Q ss_pred ceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHHHHHH
Q 042373 306 LELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDLVKAF 353 (494)
Q Consensus 306 v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~~~l 353 (494)
|..||||++|.+++.|+||+|| |||.|.+++|+.+.+...++.|.+.-
T Consensus 495 V~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 495 VQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred eeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 9999999999999999999999 99999999999999999999999874
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=461.52 Aligned_cols=273 Identities=34% Similarity=0.600 Sum_probs=248.9
Q ss_pred hhhhhcCH----HHHhhcCceeccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCC
Q 042373 94 REITRMSP----AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGS 169 (494)
Q Consensus 94 ~~~~~~s~----~~r~~~~i~v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGS 169 (494)
+.+..|++ -|+..+.|.++|..+|.|+.+|++.+|+.++++.+.+.||..|||||.++||..++.+|+|++|.|||
T Consensus 214 k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgs 293 (673)
T KOG0333|consen 214 KVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGS 293 (673)
T ss_pred hhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccC
Confidence 45667776 67788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHcCCCCCC---CCCCCeEEEEccchhHHHhh-----------------------------------
Q 042373 170 GKTLAFLLPMLRHIWEQPPVVP---GDDSPVGLVMAPTGELVRQQ----------------------------------- 211 (494)
Q Consensus 170 GKTlafllpil~~l~~~~~~~~---~~~~p~aLIl~PTreLa~Qi----------------------------------- 211 (494)
|||+||++|++..|...++... ...||.++||+|||||++||
T Consensus 294 Gktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gc 373 (673)
T KOG0333|consen 294 GKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGC 373 (673)
T ss_pred CccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccc
Confidence 9999999999999988775543 33599999999999999998
Q ss_pred ----hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcC------------------------
Q 042373 212 ----VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP------------------------ 263 (494)
Q Consensus 212 ----~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~------------------------ 263 (494)
+|||||+|.|.+ +.+-|++|.|||+||||+|+||||++++..|+.++|.
T Consensus 374 eiviatPgrLid~Len---r~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k 450 (673)
T KOG0333|consen 374 EIVIATPGRLIDSLEN---RYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSK 450 (673)
T ss_pred eeeecCchHHHHHHHH---HHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhccccc
Confidence 799999999997 4668999999999999999999999999999998853
Q ss_pred -CCcEEEecCCCChHHHHHHHh----------------------------------------------------------
Q 042373 264 -DRQAVLFSPTFPPRVEILARK---------------------------------------------------------- 284 (494)
Q Consensus 264 -~~Q~ilfSAT~~~~v~~l~~~---------------------------------------------------------- 284 (494)
-+|+++||||+|+.++.+++.
T Consensus 451 ~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~ 530 (673)
T KOG0333|consen 451 KYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGA 530 (673)
T ss_pred ceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhH
Confidence 179999999999999999997
Q ss_pred ----------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhcc---
Q 042373 285 ----------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ--- 327 (494)
Q Consensus 285 ----------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR--- 327 (494)
.|..+||||||+++||||||+|++|||||++.++++|+|||||
T Consensus 531 d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgR 610 (673)
T KOG0333|consen 531 DALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGR 610 (673)
T ss_pred HHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccc
Confidence 7899999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEecccCHHHHHHHHHHHH-hccCcchHHHHHHHH
Q 042373 328 SWLKSCAFRFISEENAIYATDLVKAFE-LSELVVRDDLKAVAD 369 (494)
Q Consensus 328 aGr~G~aitfv~~~~~~~~~~i~~~l~-~~~~~vp~~l~~~~~ 369 (494)
||+.|++++|+++.+...+++|...|. -....+|++|....+
T Consensus 611 AGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~~ 653 (673)
T KOG0333|consen 611 AGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELANHPD 653 (673)
T ss_pred cccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccChh
Confidence 777899999999999999999999887 445667877755433
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-55 Score=454.92 Aligned_cols=257 Identities=36% Similarity=0.547 Sum_probs=239.0
Q ss_pred ceeccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCC
Q 042373 109 LKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPP 188 (494)
Q Consensus 109 i~v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~ 188 (494)
+++.|.++|.++.+|.+..+.+.++.+++..||..|||+|+.+||.+..|+|+++||+||||||.||++|++.+++...+
T Consensus 62 v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~ 141 (482)
T KOG0335|consen 62 VKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGP 141 (482)
T ss_pred eeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred CCC----CCCCCeEEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcC
Q 042373 189 VVP----GDDSPVGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNG 225 (494)
Q Consensus 189 ~~~----~~~~p~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~ 225 (494)
... +...|.+|||+||||||.|+ +|||||.+++..+
T Consensus 142 ~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g- 220 (482)
T KOG0335|consen 142 EDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG- 220 (482)
T ss_pred ccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc-
Confidence 322 11369999999999999998 8999999999985
Q ss_pred cceecccceEEEEEcccchhcc-cCChhHHHHHHHhhc----CCCcEEEecCCCChHHHHHHHh----------------
Q 042373 226 VKITNLTRVTYLVLDEADRMFD-MGFEPQITRIVQNIR----PDRQAVLFSPTFPPRVEILARK---------------- 284 (494)
Q Consensus 226 ~~~~~l~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~----~~~Q~ilfSAT~~~~v~~l~~~---------------- 284 (494)
.+.|..++||||||||+|+| |||.++|++|+.+.. ..+|++|||||||..+..++..
T Consensus 221 --~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~ 298 (482)
T KOG0335|consen 221 --KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGS 298 (482)
T ss_pred --eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecc
Confidence 56899999999999999999 999999999999885 3799999999999999887765
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 299 ~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~ 378 (482)
T KOG0335|consen 299 TSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQ 378 (482)
T ss_pred ccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHH
Confidence
Q ss_pred ------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHHHHHHHh
Q 042373 285 ------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDLVKAFEL 355 (494)
Q Consensus 285 ------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~~~l~~ 355 (494)
.|.+++||||+|++|||||++|+||||||+|.++.+|+||||| +|+.|.+++|++..+......|.++|..
T Consensus 379 al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~e 458 (482)
T KOG0335|consen 379 ALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTE 458 (482)
T ss_pred HHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999 5558899999999999999999999999
Q ss_pred ccCcchHHHHHHH
Q 042373 356 SELVVRDDLKAVA 368 (494)
Q Consensus 356 ~~~~vp~~l~~~~ 368 (494)
++|.+|+||.+++
T Consensus 459 a~q~vP~wl~~~~ 471 (482)
T KOG0335|consen 459 ANQEVPQWLSELS 471 (482)
T ss_pred hcccCcHHHHhhh
Confidence 9999999998854
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-53 Score=455.01 Aligned_cols=235 Identities=38% Similarity=0.600 Sum_probs=216.0
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
.+|++++|++.++++|.++||..|||||.++||.++.|+|++++|+||||||+||++|+++++.... ... .+.+||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~---~~~-~~~aLi 104 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV---ERK-YVSALI 104 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc---ccC-CCceEE
Confidence 7899999999999999999999999999999999999999999999999999999999999976431 111 122999
Q ss_pred EccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEc
Q 042373 201 MAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLD 240 (494)
Q Consensus 201 l~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlD 240 (494)
|+||||||.|+ +|||||+|++..+ .+++++++++|+|
T Consensus 105 l~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~---~l~l~~v~~lVlD 181 (513)
T COG0513 105 LAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG---KLDLSGVETLVLD 181 (513)
T ss_pred ECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC---CcchhhcCEEEec
Confidence 99999999998 8999999999985 4689999999999
Q ss_pred ccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh------------------------------------
Q 042373 241 EADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------------ 284 (494)
Q Consensus 241 EaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------ 284 (494)
|||+|++|||.+++..|+..++.++|+++||||+|..+..+++.
T Consensus 182 EADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~ 261 (513)
T COG0513 182 EADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKL 261 (513)
T ss_pred cHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999988887
Q ss_pred -----------------------------------------------------------cCCccceeeccccccCCCCCC
Q 042373 285 -----------------------------------------------------------TNVCNLSIANSVRARGLDEKE 305 (494)
Q Consensus 285 -----------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~ 305 (494)
.|.++||||||+++|||||++
T Consensus 262 ~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~ 341 (513)
T COG0513 262 ELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPD 341 (513)
T ss_pred HHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccc
Confidence 799999999999999999999
Q ss_pred ceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEeccc-CHHHHHHHHHHHHhc---cCcchH
Q 042373 306 LELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEE-NAIYATDLVKAFELS---ELVVRD 362 (494)
Q Consensus 306 v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~-~~~~~~~i~~~l~~~---~~~vp~ 362 (494)
|++|||||+|.+.++||||+|| +|+.|.+++|+++. +...+..+++.+... ...+|.
T Consensus 342 v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~ 405 (513)
T COG0513 342 VSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPL 405 (513)
T ss_pred cceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCc
Confidence 9999999999999999999999 67799999999986 899999999998765 345554
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-52 Score=413.06 Aligned_cols=236 Identities=31% Similarity=0.443 Sum_probs=217.0
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
....|+.|||++++.+.|+.+|+.+|||||..|||.||.|+|+|++|.||||||++|.+|++++|...+- |-.+
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~------giFa 78 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY------GIFA 78 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC------cceE
Confidence 3578999999999999999999999999999999999999999999999999999999999999977552 7899
Q ss_pred EEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCc-ceecccceEEEE
Q 042373 199 LVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGV-KITNLTRVTYLV 238 (494)
Q Consensus 199 LIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~-~~~~l~~l~~lV 238 (494)
||++||||||.|+ +||||+.+++..+.. ....+++++|+|
T Consensus 79 lvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 79 LVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred EEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 9999999999998 799999999987522 234589999999
Q ss_pred EcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh----------------------------------
Q 042373 239 LDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK---------------------------------- 284 (494)
Q Consensus 239 lDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~---------------------------------- 284 (494)
+||||+|++..|.+.++-|++.+|..||+++||||++..+..+...
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vk 238 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVK 238 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhh
Confidence 9999999999999999999999999999999999999888776553
Q ss_pred ---------------------------------------------------------------cCCccceeeccccccCC
Q 042373 285 ---------------------------------------------------------------TNVCNLSIANSVRARGL 301 (494)
Q Consensus 285 ---------------------------------------------------------------~g~~~ILVaTdv~~rGl 301 (494)
.+..+|||||||++|||
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 78999999999999999
Q ss_pred CCCCceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHHHHHHHhccCcc
Q 042373 302 DEKELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDLVKAFELSELVV 360 (494)
Q Consensus 302 Di~~v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~~~l~~~~~~v 360 (494)
|||.|++|||||+|.++.+||||+|| |||.|.+|+|+++.|...+..|++-+...-.+.
T Consensus 319 DIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~ 380 (442)
T KOG0340|consen 319 DIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEY 380 (442)
T ss_pred CCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999 999999999999999999999998877554443
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-51 Score=414.21 Aligned_cols=227 Identities=35% Similarity=0.543 Sum_probs=204.2
Q ss_pred CCcccCC--CCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 121 KTWRQTG--LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 121 ~~f~~l~--L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
.+|++++ |+++|++++..+||...||+|..+||.++.++||++.|+||||||+||++|+++.++.+....+.. ...+
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~-~vga 82 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG-QVGA 82 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCcc-ceeE
Confidence 5688776 559999999999999999999999999999999999999999999999999999997654322221 3569
Q ss_pred EEEccchhHHHhh-----------------------------------------hhhhHHHHHHHhcCcceecccceEEE
Q 042373 199 LVMAPTGELVRQQ-----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYL 237 (494)
Q Consensus 199 LIl~PTreLa~Qi-----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~l 237 (494)
|||+||||||.|| +|||||.|++.+... .++++++.+|
T Consensus 83 lIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~-~l~~rsLe~L 161 (567)
T KOG0345|consen 83 LIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAE-KLSFRSLEIL 161 (567)
T ss_pred EEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhh-hccccccceE
Confidence 9999999999999 899999999987543 4568899999
Q ss_pred EEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh---------------------------------
Q 042373 238 VLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK--------------------------------- 284 (494)
Q Consensus 238 VlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~--------------------------------- 284 (494)
|+||||++++|||..+++.|+..+|++|+|-|||||...++..|++.
T Consensus 162 VLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~e 241 (567)
T KOG0345|consen 162 VLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADE 241 (567)
T ss_pred EecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHH
Confidence 99999999999999999999999999999999999999999999886
Q ss_pred ---------------------------------------------------------------cCCccceeeccccccCC
Q 042373 285 ---------------------------------------------------------------TNVCNLSIANSVRARGL 301 (494)
Q Consensus 285 ---------------------------------------------------------------~g~~~ILVaTdv~~rGl 301 (494)
.....+|+||||++|||
T Consensus 242 K~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 242 KLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 34667999999999999
Q ss_pred CCCCceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHH
Q 042373 302 DEKELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDL 349 (494)
Q Consensus 302 Di~~v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i 349 (494)
|||+|++||+||+|.++..|+||+|| +||.|.||+|+.+++..|...+
T Consensus 322 Dip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345|consen 322 DIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFL 372 (567)
T ss_pred CCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHH
Confidence 99999999999999999999999999 7889999999999877665543
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-50 Score=413.36 Aligned_cols=228 Identities=30% Similarity=0.467 Sum_probs=211.1
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
...|+++.|++.++++|+++||+++|++|+.+||.++.|+|+++.|.||||||+||+||.++.++..+.... ++..+|
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r--~~~~vl 158 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR--NGTGVL 158 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC--CCeeEE
Confidence 456889999999999999999999999999999999999999999999999999999999999998765433 377899
Q ss_pred EEccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 200 VMAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 200 Il~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
|||||||||.|+ +|||||.|+|.+... +-+++++++|+
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~--f~~r~~k~lvl 236 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG--FLFRNLKCLVL 236 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc--chhhccceeEe
Confidence 999999999998 899999999998754 45678899999
Q ss_pred cccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------
Q 042373 240 DEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------- 284 (494)
Q Consensus 240 DEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------- 284 (494)
||||+++++||+..|+.|+..++..+|+++||||.|++|+.+++-
T Consensus 237 DEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~ 316 (543)
T KOG0342|consen 237 DEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSR 316 (543)
T ss_pred ecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccch
Confidence 999999999999999999999999999999999999999999985
Q ss_pred -------------------------------------------------------------cCCccceeeccccccCCCC
Q 042373 285 -------------------------------------------------------------TNVCNLSIANSVRARGLDE 303 (494)
Q Consensus 285 -------------------------------------------------------------~g~~~ILVaTdv~~rGlDi 303 (494)
..+.-|||||||++||+|+
T Consensus 317 f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~ 396 (543)
T KOG0342|consen 317 FSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDI 396 (543)
T ss_pred HHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCC
Confidence 4566699999999999999
Q ss_pred CCceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHHHH
Q 042373 304 KELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDLVK 351 (494)
Q Consensus 304 ~~v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~~ 351 (494)
|+|++||.||+|.+.++||||+|| .|..|.++.|+.+++..+++.|.+
T Consensus 397 P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 397 PDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred CCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh
Confidence 999999999999999999999999 455889999999999999998884
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-51 Score=391.71 Aligned_cols=241 Identities=30% Similarity=0.454 Sum_probs=224.0
Q ss_pred CCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCC
Q 042373 116 APKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDS 195 (494)
Q Consensus 116 ~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~ 195 (494)
--.++.+|+++||.+.+++.+...||++|+.||+.|||.|+.|||||++|+.|+|||.+|.+.+++.+.-. ...
T Consensus 22 ~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~------~r~ 95 (400)
T KOG0328|consen 22 KVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS------VRE 95 (400)
T ss_pred CcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc------cce
Confidence 34578999999999999999999999999999999999999999999999999999999999999876432 225
Q ss_pred CeEEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEE
Q 042373 196 PVGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.++|||+||||||.|+ +||||+.+++.++. +..+.+++
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~---L~tr~vkm 172 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS---LRTRAVKM 172 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcc---ccccceeE
Confidence 7899999999999998 79999999999854 46789999
Q ss_pred EEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh--------------------------------
Q 042373 237 LVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK-------------------------------- 284 (494)
Q Consensus 237 lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~-------------------------------- 284 (494)
+||||||.|++.||..|+..|++.+|++.|++++|||+|.++.+...+
T Consensus 173 lVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Eew 252 (400)
T KOG0328|consen 173 LVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEW 252 (400)
T ss_pred EEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhh
Confidence 999999999999999999999999999999999999999999988876
Q ss_pred -------------------------------------------------------------cCCccceeeccccccCCCC
Q 042373 285 -------------------------------------------------------------TNVCNLSIANSVRARGLDE 303 (494)
Q Consensus 285 -------------------------------------------------------------~g~~~ILVaTdv~~rGlDi 303 (494)
+|+.+|||+|||-+||||+
T Consensus 253 KfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv 332 (400)
T KOG0328|consen 253 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDV 332 (400)
T ss_pred hHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCc
Confidence 7999999999999999999
Q ss_pred CCceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHHHHHHHhccCcchHHHH
Q 042373 304 KELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDLVKAFELSELVVRDDLK 365 (494)
Q Consensus 304 ~~v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~ 365 (494)
+.|++|||||+|++.+.|+||+|| .||+|.+|.|+..++.+.+++|++++.....+.|..+.
T Consensus 333 ~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nva 397 (400)
T KOG0328|consen 333 QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVA 397 (400)
T ss_pred ceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhh
Confidence 999999999999999999999999 66799999999999999999999999998888886643
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-50 Score=412.67 Aligned_cols=235 Identities=33% Similarity=0.534 Sum_probs=212.5
Q ss_pred CCCCCCCcccCCCCHHHHHHHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 116 APKPIKTWRQTGLTTKILETFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 116 ~P~pi~~f~~l~L~~~ll~~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
.|-.-..|..+||++.+...|+. |++..||.+|+++||.++.|||+++.|+||||||+||++|+++++....+.-....
T Consensus 131 ~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~ 210 (708)
T KOG0348|consen 131 APFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSD 210 (708)
T ss_pred cccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccC
Confidence 34445679999999999999965 89999999999999999999999999999999999999999999988765555556
Q ss_pred CCeEEEEccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecccce
Q 042373 195 SPVGLVMAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l~~l 234 (494)
|+.||||+||||||.|+ +|||||.|+|.+. ..+.++++
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT--~~i~~s~L 288 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNT--KSIKFSRL 288 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhcc--chheeeee
Confidence 99999999999999998 7999999999875 45789999
Q ss_pred EEEEEcccchhcccCChhHHHHHHHhhc-------------CCCcEEEecCCCChHHHHHHHh-----------------
Q 042373 235 TYLVLDEADRMFDMGFEPQITRIVQNIR-------------PDRQAVLFSPTFPPRVEILARK----------------- 284 (494)
Q Consensus 235 ~~lVlDEaD~ml~~gf~~~i~~Il~~l~-------------~~~Q~ilfSAT~~~~v~~l~~~----------------- 284 (494)
+||||||||+|+++||+..|..|++.+. +.+|.+|+|||++..|..|+..
T Consensus 289 RwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~ 368 (708)
T KOG0348|consen 289 RWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQL 368 (708)
T ss_pred eEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhc
Confidence 9999999999999999999999998772 2479999999999999988875
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 369 ~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~ 448 (708)
T KOG0348|consen 369 NPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEA 448 (708)
T ss_pred CcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhh
Confidence
Q ss_pred ----------------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCH
Q 042373 285 ----------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDY 318 (494)
Q Consensus 285 ----------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~ 318 (494)
...--||+||||++||||+|+|.+||.||+|.+.
T Consensus 449 l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~ 528 (708)
T KOG0348|consen 449 LLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFST 528 (708)
T ss_pred hhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCH
Confidence 2333499999999999999999999999999999
Q ss_pred hHHHhhhcc---CCCcceEEEEecccCHHHHHHHHHH
Q 042373 319 EDYVHHCCQ---SWLKSCAFRFISEENAIYATDLVKA 352 (494)
Q Consensus 319 ~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~~~ 352 (494)
.+|+||+|| +|.+|.++.|+.+.+..|++.+.+.
T Consensus 529 adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 529 ADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 999999999 8999999999999999888877764
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-50 Score=414.16 Aligned_cols=230 Identities=31% Similarity=0.467 Sum_probs=211.3
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
.+..|++|+|+..+++.|+..+|..||.||+++||..|.|+|||+.|.|||||||||++|+|++++.... ....|.-|
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kW--s~~DGlGa 144 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKW--SPTDGLGA 144 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCC--CCCCCcee
Confidence 4688999999999999999999999999999999999999999999999999999999999999987653 33448889
Q ss_pred EEEccchhHHHhh--------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEc
Q 042373 199 LVMAPTGELVRQQ--------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLD 240 (494)
Q Consensus 199 LIl~PTreLa~Qi--------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlD 240 (494)
|||+||||||.|+ ||||||+.+|..+. .++.+++.+||||
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~--~f~t~~lQmLvLD 222 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENP--NFSTSNLQMLVLD 222 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcC--CCCCCcceEEEec
Confidence 9999999999998 99999999998763 4678899999999
Q ss_pred ccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh------------------------------------
Q 042373 241 EADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------------ 284 (494)
Q Consensus 241 EaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------ 284 (494)
|||+|++|||...+..|++++|+.||++|||||.+..+..+++.
T Consensus 223 EADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~ 302 (758)
T KOG0343|consen 223 EADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKID 302 (758)
T ss_pred cHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHH
Confidence 99999999999999999999999999999999999999999986
Q ss_pred ------------------------------------------------------------cCCccceeeccccccCCCCC
Q 042373 285 ------------------------------------------------------------TNVCNLSIANSVRARGLDEK 304 (494)
Q Consensus 285 ------------------------------------------------------------~g~~~ILVaTdv~~rGlDi~ 304 (494)
..+.-||+|||+++||||+|
T Consensus 303 ~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFp 382 (758)
T KOG0343|consen 303 MLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFP 382 (758)
T ss_pred HHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCc
Confidence 45677999999999999999
Q ss_pred CceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccC-HHHHHHHHHH
Q 042373 305 ELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEEN-AIYATDLVKA 352 (494)
Q Consensus 305 ~v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~-~~~~~~i~~~ 352 (494)
.|+|||.||+|.++.+||||+|| .+..|.++.++++.+ ..++..|.+.
T Consensus 383 aVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 383 AVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred ccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 99999999999999999999999 345899999999987 6666666654
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=411.89 Aligned_cols=237 Identities=34% Similarity=0.476 Sum_probs=212.8
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCC-CCCCCCeE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVV-PGDDSPVG 198 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~-~~~~~p~a 198 (494)
-.+|++++|++.++++|.++||..|||+|++|||.+++|+|++++||||||||++|++|+++++...+... ....++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 46899999999999999999999999999999999999999999999999999999999999997654321 12236899
Q ss_pred EEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 199 LVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 199 LIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
|||+||||||.|+ +||++|.+++..+ .++++++++|||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~---~~~l~~v~~lVi 163 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN---HINLGAIQVVVL 163 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC---CcccccccEEEE
Confidence 9999999999997 7999999999764 457899999999
Q ss_pred cccchhcccCChhHHHHHHHhhcC--CCcEEEecCCCChHHHHHHHh---------------------------------
Q 042373 240 DEADRMFDMGFEPQITRIVQNIRP--DRQAVLFSPTFPPRVEILARK--------------------------------- 284 (494)
Q Consensus 240 DEaD~ml~~gf~~~i~~Il~~l~~--~~Q~ilfSAT~~~~v~~l~~~--------------------------------- 284 (494)
||||+|++++|...+..++..++. .+|+++||||++..+..++..
T Consensus 164 DEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~ 243 (423)
T PRK04837 164 DEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKM 243 (423)
T ss_pred ecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHH
Confidence 999999999999999999999974 678999999999988777653
Q ss_pred -----------------------------------------------------------cCCccceeeccccccCCCCCC
Q 042373 285 -----------------------------------------------------------TNVCNLSIANSVRARGLDEKE 305 (494)
Q Consensus 285 -----------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~ 305 (494)
.|+++|||||++++||||+|+
T Consensus 244 ~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~ 323 (423)
T PRK04837 244 RLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPA 323 (423)
T ss_pred HHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccc
Confidence 799999999999999999999
Q ss_pred ceEEEecCCCCCHhHHHhhhccCC---CcceEEEEecccCHHHHHHHHHHHHhccCc
Q 042373 306 LELVINFDAPNDYEDYVHHCCQSW---LKSCAFRFISEENAIYATDLVKAFELSELV 359 (494)
Q Consensus 306 v~~VInyd~P~s~~~yvhR~GRaG---r~G~aitfv~~~~~~~~~~i~~~l~~~~~~ 359 (494)
|++|||||+|.+.++|+||+||+| +.|.||+|+++.+...+..|.+.+......
T Consensus 324 v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~ 380 (423)
T PRK04837 324 VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPV 380 (423)
T ss_pred cCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999955 578999999999999999998888766433
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=416.72 Aligned_cols=234 Identities=35% Similarity=0.551 Sum_probs=212.2
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
++|++++|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+........+...+++||
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 37999999999999999999999999999999999999999999999999999999999999876432222233568999
Q ss_pred EccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcc
Q 042373 201 MAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDE 241 (494)
Q Consensus 201 l~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDE 241 (494)
|+||||||.|+ +||++|.+++... .++++++++|||||
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~---~~~l~~v~~lViDE 157 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN---AVKLDQVEILVLDE 157 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC---CcccccceEEEeec
Confidence 99999999987 7999999988764 35789999999999
Q ss_pred cchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-------------------------------------
Q 042373 242 ADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------------- 284 (494)
Q Consensus 242 aD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------- 284 (494)
||+|++++|...+..++..++..+|+++||||++..+..++..
T Consensus 158 ah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 237 (456)
T PRK10590 158 ADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLS 237 (456)
T ss_pred HHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHH
Confidence 9999999999999999999999999999999999988777654
Q ss_pred -------------------------------------------------------cCCccceeeccccccCCCCCCceEE
Q 042373 285 -------------------------------------------------------TNVCNLSIANSVRARGLDEKELELV 309 (494)
Q Consensus 285 -------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~V 309 (494)
.|.++|||||++++||||||+|++|
T Consensus 238 ~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 238 QMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 7899999999999999999999999
Q ss_pred EecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhcc
Q 042373 310 INFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSE 357 (494)
Q Consensus 310 Inyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~ 357 (494)
||||+|.+.++|+||+||+|| .|.+++|++..+...+..+++.+....
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999665 788999999999999999999877543
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-49 Score=405.36 Aligned_cols=262 Identities=29% Similarity=0.450 Sum_probs=218.4
Q ss_pred CCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCC-----
Q 042373 116 APKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPV----- 189 (494)
Q Consensus 116 ~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~----- 189 (494)
-+..+..|.+|+|+..++.+|..+||..||+||+.+||.++.| .|+++-|.|||||||||.+||++.+.+....
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3456788999999999999999999999999999999999999 7999999999999999999999966543321
Q ss_pred --CCCCCCCeEEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcce
Q 042373 190 --VPGDDSPVGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKI 228 (494)
Q Consensus 190 --~~~~~~p~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~ 228 (494)
......|.+||++||||||.|+ +|||||+.++..++..+
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 1111245699999999999998 89999999999887767
Q ss_pred ecccceEEEEEcccchhcccCChhHHHHHHHhhc-----CCCcEEEecCCCChHHH---------------------HHH
Q 042373 229 TNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIR-----PDRQAVLFSPTFPPRVE---------------------ILA 282 (494)
Q Consensus 229 ~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~-----~~~Q~ilfSAT~~~~v~---------------------~l~ 282 (494)
.+|+.|++|||||||||++.|+...+..|++.+. +.+|++.||||++-... .|.
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 7899999999999999999999999999998885 46899999999863321 222
Q ss_pred Hh------------------------------------------------------------------------------
Q 042373 283 RK------------------------------------------------------------------------------ 284 (494)
Q Consensus 283 ~~------------------------------------------------------------------------------ 284 (494)
..
T Consensus 416 k~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA 495 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHA 495 (731)
T ss_pred HHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhH
Confidence 21
Q ss_pred ---------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHH
Q 042373 285 ---------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYA 346 (494)
Q Consensus 285 ---------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~ 346 (494)
....-||||||||+||||||+|.|||||.+|.+.+.||||.|| |+..|..+.|+.+.+...+
T Consensus 496 ~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~ 575 (731)
T KOG0347|consen 496 SMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPL 575 (731)
T ss_pred HHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHH
Confidence 5566799999999999999999999999999999999999999 7889999999999999999
Q ss_pred HHHHHHHHhccC-cchHHHHHHHHHHHHHHhc
Q 042373 347 TDLVKAFELSEL-VVRDDLKAVADSFIAKVNL 377 (494)
Q Consensus 347 ~~i~~~l~~~~~-~vp~~l~~~~~~~~~~~~~ 377 (494)
..|.+-|+.... ++-+-...+.+.+.+++..
T Consensus 576 ~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrL 607 (731)
T KOG0347|consen 576 KKLCKTLKKKEDLPIFPVETDIMDALKERVRL 607 (731)
T ss_pred HHHHHHHhhccCCCceeccHHHHHHHHHHHHH
Confidence 999998886432 2212234444444444443
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-49 Score=385.46 Aligned_cols=235 Identities=26% Similarity=0.460 Sum_probs=220.8
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
..|+++.|..+++..+.+.||++|+|||.++||.++.|||+++.|..|+|||.||++|+++.+.. .....+++|
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~------~~~~IQ~~i 158 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP------KKNVIQAII 158 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc------cccceeEEE
Confidence 56999999999999999999999999999999999999999999999999999999999998843 334778999
Q ss_pred EccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcc
Q 042373 201 MAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDE 241 (494)
Q Consensus 201 l~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDE 241 (494)
++||||||.|+ +||||++|++.++ ...++.+.++|+||
T Consensus 159 lVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg---Va~ls~c~~lV~DE 235 (459)
T KOG0326|consen 159 LVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG---VADLSDCVILVMDE 235 (459)
T ss_pred EeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc---cccchhceEEEech
Confidence 99999999997 8999999999874 56899999999999
Q ss_pred cchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-------------------------------------
Q 042373 242 ADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------------- 284 (494)
Q Consensus 242 aD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------- 284 (494)
||.|+...|.+.++.++..+|+.+|+++||||||-.+..+..+
T Consensus 236 ADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLnt 315 (459)
T KOG0326|consen 236 ADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNT 315 (459)
T ss_pred hhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHH
Confidence 9999999999999999999999999999999999999888876
Q ss_pred ------------------------------------------------------cCCccceeeccccccCCCCCCceEEE
Q 042373 285 ------------------------------------------------------TNVCNLSIANSVRARGLDEKELELVI 310 (494)
Q Consensus 285 ------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VI 310 (494)
+|.|+.|||||.+.||||++.|++||
T Consensus 316 LfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVI 395 (459)
T KOG0326|consen 316 LFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVI 395 (459)
T ss_pred HHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEE
Confidence 89999999999999999999999999
Q ss_pred ecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCcchHHH
Q 042373 311 NFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELVVRDDL 364 (494)
Q Consensus 311 nyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l 364 (494)
|||+|.+.++|+||+||+|| -|.||.|++.++...+..|++-|.....++|..+
T Consensus 396 NFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 396 NFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred ecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcC
Confidence 99999999999999999554 7899999999999999999999999999999655
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=388.58 Aligned_cols=234 Identities=29% Similarity=0.500 Sum_probs=217.5
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
.+|++|||++.|++++.++||++||-||..+||.++.|+|+++.|.||||||+||++|+++.++.......+..+|.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 68999999999999999999999999999999999999999999999999999999999999998877666777999999
Q ss_pred EccchhHHHhh-----------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 201 MAPTGELVRQQ-----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 201 l~PTreLa~Qi-----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
|+||||||.|+ +||+++..++..+.. ..+..++++|+
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~--~~~~~l~~LVv 176 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVL--EYLDSLSFLVV 176 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccc--hhhhheeeEEe
Confidence 99999999998 799999999988643 67899999999
Q ss_pred cccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------
Q 042373 240 DEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------- 284 (494)
Q Consensus 240 DEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------- 284 (494)
||||.|+..||++.+..|..++|+..|++++|||++..+..+-..
T Consensus 177 DEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfl 256 (569)
T KOG0346|consen 177 DEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFL 256 (569)
T ss_pred chhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHH
Confidence 999999999999999999999999999999999999999877664
Q ss_pred -----------------------------------------------------------cCCccceeecc----------
Q 042373 285 -----------------------------------------------------------TNVCNLSIANS---------- 295 (494)
Q Consensus 285 -----------------------------------------------------------~g~~~ILVaTd---------- 295 (494)
.|-++|+||||
T Consensus 257 llyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ee 336 (569)
T KOG0346|consen 257 LLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEE 336 (569)
T ss_pred HHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhc
Confidence 78999999998
Q ss_pred -------------------------ccccCCCCCCceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHH
Q 042373 296 -------------------------VRARGLDEKELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYAT 347 (494)
Q Consensus 296 -------------------------v~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~ 347 (494)
-.+||||+.+|.+|||||+|.+...||||+|| +++.|.+++||.+.+.....
T Consensus 337 e~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~ 416 (569)
T KOG0346|consen 337 EVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKE 416 (569)
T ss_pred cccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhh
Confidence 23899999999999999999999999999999 67799999999999888778
Q ss_pred HHHHHHHhc
Q 042373 348 DLVKAFELS 356 (494)
Q Consensus 348 ~i~~~l~~~ 356 (494)
.|+.+++..
T Consensus 417 ~le~~~~d~ 425 (569)
T KOG0346|consen 417 SLESILKDE 425 (569)
T ss_pred HHHHHHhhH
Confidence 888777653
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-47 Score=403.87 Aligned_cols=229 Identities=34% Similarity=0.483 Sum_probs=210.7
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
..+|++++|++.++++|.++||..|||+|.+|||.++.|+|+|++||||||||++|++|+++++.... .++++|
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~------~~~~~l 76 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR------FRVQAL 76 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc------CCceEE
Confidence 36899999999999999999999999999999999999999999999999999999999999985322 267899
Q ss_pred EEccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 200 VMAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 200 Il~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
||+||||||.|+ +||++|.+++.++ .+.++++++||+
T Consensus 77 il~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~---~~~l~~l~~lVi 153 (460)
T PRK11776 77 VLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG---TLDLDALNTLVL 153 (460)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcC---CccHHHCCEEEE
Confidence 999999999997 7999999999864 357899999999
Q ss_pred cccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------
Q 042373 240 DEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------- 284 (494)
Q Consensus 240 DEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------- 284 (494)
||||+|+++||...+..++..++..+|+++||||+|+.+..++..
T Consensus 154 DEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l 233 (460)
T PRK11776 154 DEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPAL 233 (460)
T ss_pred ECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHH
Confidence 999999999999999999999999999999999999998887765
Q ss_pred --------------------------------------------------------cCCccceeeccccccCCCCCCceE
Q 042373 285 --------------------------------------------------------TNVCNLSIANSVRARGLDEKELEL 308 (494)
Q Consensus 285 --------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~ 308 (494)
.|..+|||||++++||||+|+|++
T Consensus 234 ~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~ 313 (460)
T PRK11776 234 QRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEA 313 (460)
T ss_pred HHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCe
Confidence 789999999999999999999999
Q ss_pred EEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhcc
Q 042373 309 VINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSE 357 (494)
Q Consensus 309 VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~ 357 (494)
|||||+|.+.+.|+||+||+|| .|.||+|+++.+...+..+.+.+....
T Consensus 314 VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~ 365 (460)
T PRK11776 314 VINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKL 365 (460)
T ss_pred EEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCC
Confidence 9999999999999999999655 789999999999999898988876543
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=410.02 Aligned_cols=237 Identities=32% Similarity=0.473 Sum_probs=211.5
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCC-CCCCCCe
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVV-PGDDSPV 197 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~-~~~~~p~ 197 (494)
...+|++++|++.|+++|.++||..|||||.++||.++.|+|+|++||||||||++|++|+++++...+... ....+++
T Consensus 7 ~~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~r 86 (572)
T PRK04537 7 TDLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPR 86 (572)
T ss_pred CCCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCce
Confidence 335799999999999999999999999999999999999999999999999999999999999997643211 1122689
Q ss_pred EEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEE
Q 042373 198 GLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 198 aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
+|||+||||||.|+ +||++|++++... ..+.++.+++||
T Consensus 87 aLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~--~~~~l~~v~~lV 164 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQH--KVVSLHACEICV 164 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhc--cccchhheeeeE
Confidence 99999999999998 7999999998764 245789999999
Q ss_pred EcccchhcccCChhHHHHHHHhhcC--CCcEEEecCCCChHHHHHHHh--------------------------------
Q 042373 239 LDEADRMFDMGFEPQITRIVQNIRP--DRQAVLFSPTFPPRVEILARK-------------------------------- 284 (494)
Q Consensus 239 lDEaD~ml~~gf~~~i~~Il~~l~~--~~Q~ilfSAT~~~~v~~l~~~-------------------------------- 284 (494)
|||||+|++++|...+..|+..++. .+|+++||||++..+..++..
T Consensus 165 iDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k 244 (572)
T PRK04537 165 LDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEK 244 (572)
T ss_pred ecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHH
Confidence 9999999999999999999999976 789999999999888776654
Q ss_pred ------------------------------------------------------------cCCccceeeccccccCCCCC
Q 042373 285 ------------------------------------------------------------TNVCNLSIANSVRARGLDEK 304 (494)
Q Consensus 285 ------------------------------------------------------------~g~~~ILVaTdv~~rGlDi~ 304 (494)
.|+++|||||++++|||||+
T Consensus 245 ~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip 324 (572)
T PRK04537 245 QTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID 324 (572)
T ss_pred HHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCcc
Confidence 78999999999999999999
Q ss_pred CceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhcc
Q 042373 305 ELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSE 357 (494)
Q Consensus 305 ~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~ 357 (494)
+|++|||||+|.+.++|+||+||+|| .|.||+|+++.+...+..|.+.+....
T Consensus 325 ~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~ 380 (572)
T PRK04537 325 GVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKI 380 (572)
T ss_pred CCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999555 789999999999889999988876543
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=412.35 Aligned_cols=231 Identities=35% Similarity=0.540 Sum_probs=211.8
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
..+|++++|++.++++|.++||.+|||+|.++||.++.|+|+|++||||||||++|++|+++.+.... .++++|
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~------~~~~~L 78 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL------KAPQIL 78 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc------CCCeEE
Confidence 46799999999999999999999999999999999999999999999999999999999999885432 268999
Q ss_pred EEccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 200 VMAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 200 Il~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
||+|||+||.|+ +||++|++++.++ .+++++|.+|||
T Consensus 79 IL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~---~l~l~~l~~lVl 155 (629)
T PRK11634 79 VLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG---TLDLSKLSGLVL 155 (629)
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC---CcchhhceEEEe
Confidence 999999999997 7999999999874 457999999999
Q ss_pred cccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------
Q 042373 240 DEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------- 284 (494)
Q Consensus 240 DEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------- 284 (494)
||||+|++++|...+..|+..++..+|+++||||+|..+..+++.
T Consensus 156 DEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~ 235 (629)
T PRK11634 156 DEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA 235 (629)
T ss_pred ccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHH
Confidence 999999999999999999999999999999999999988777654
Q ss_pred ---------------------------------------------------------cCCccceeeccccccCCCCCCce
Q 042373 285 ---------------------------------------------------------TNVCNLSIANSVRARGLDEKELE 307 (494)
Q Consensus 285 ---------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~ 307 (494)
.|+++|||||++++||||+|+|+
T Consensus 236 L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~ 315 (629)
T PRK11634 236 LVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS 315 (629)
T ss_pred HHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCC
Confidence 78999999999999999999999
Q ss_pred EEEecCCCCCHhHHHhhhccCC---CcceEEEEecccCHHHHHHHHHHHHhccCc
Q 042373 308 LVINFDAPNDYEDYVHHCCQSW---LKSCAFRFISEENAIYATDLVKAFELSELV 359 (494)
Q Consensus 308 ~VInyd~P~s~~~yvhR~GRaG---r~G~aitfv~~~~~~~~~~i~~~l~~~~~~ 359 (494)
+|||||+|.+.+.|+||+||+| +.|.|++|+++.+...+..|.+.++.....
T Consensus 316 ~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~ 370 (629)
T PRK11634 316 LVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 (629)
T ss_pred EEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcce
Confidence 9999999999999999999954 578999999999999999998887765444
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-46 Score=388.34 Aligned_cols=266 Identities=28% Similarity=0.421 Sum_probs=244.7
Q ss_pred HHHhhcCceeccCCCCCCCCCccc----CCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHH
Q 042373 102 AYRKQLDLKIREKCAPKPIKTWRQ----TGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLL 177 (494)
Q Consensus 102 ~~r~~~~i~v~g~~~P~pi~~f~~----l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafll 177 (494)
..|+.+.+.+.|.++|.|+.+|++ ...++.+++.+...||..|||+|.+|||.++.++|+++|||||||||++|.+
T Consensus 113 ~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~ 192 (593)
T KOG0344|consen 113 GIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNL 192 (593)
T ss_pred cchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhh
Confidence 678889999999999999999998 5699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------------------------------------------hhhh
Q 042373 178 PMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------------------------------------VRRG 215 (494)
Q Consensus 178 pil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------------------------------------~TPg 215 (494)
|++.++..... .++..|-+++|+.|||+||.|+ .||-
T Consensus 193 Pil~~L~~~~~-~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ 271 (593)
T KOG0344|consen 193 PILQHLKDLSQ-EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPM 271 (593)
T ss_pred HHHHHHHHhhc-ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHH
Confidence 99999976442 2334488999999999999998 6999
Q ss_pred HHHHHHHhcCcceecccceEEEEEcccchhccc-CChhHHHHHHHhhc-CCCcEEEecCCCChHHHHHHHh---------
Q 042373 216 RMIDLLCKNGVKITNLTRVTYLVLDEADRMFDM-GFEPQITRIVQNIR-PDRQAVLFSPTFPPRVEILARK--------- 284 (494)
Q Consensus 216 rl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~-gf~~~i~~Il~~l~-~~~Q~ilfSAT~~~~v~~l~~~--------- 284 (494)
|+..++..+.. .++++.|.++|+||||++++. +|..|+..|+..+. ++..+-+||||++..+++++..
T Consensus 272 ri~~~~~~~~~-~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vi 350 (593)
T KOG0344|consen 272 RIVGLLGLGKL-NIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVI 350 (593)
T ss_pred HHHHHhcCCCc-cchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEE
Confidence 99999887543 368999999999999999998 99999999998875 5677889999999999999886
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 351 vg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~ 430 (593)
T KOG0344|consen 351 VGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDET 430 (593)
T ss_pred EecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHH
Confidence
Q ss_pred -----cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHHHHHHHhc
Q 042373 285 -----TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDLVKAFELS 356 (494)
Q Consensus 285 -----~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~~~l~~~ 356 (494)
.|++++||||++++||||+.+|++|||||+|.+...|+||+|| +|+.|.||||++..+..+++.|...++.+
T Consensus 431 ~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~s 510 (593)
T KOG0344|consen 431 MERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQS 510 (593)
T ss_pred HHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHc
Confidence 7999999999999999999999999999999999999999998 77789999999999999999999999999
Q ss_pred cCcchHHHHHHHH
Q 042373 357 ELVVRDDLKAVAD 369 (494)
Q Consensus 357 ~~~vp~~l~~~~~ 369 (494)
+.+||+++..+..
T Consensus 511 G~evpe~~m~~~k 523 (593)
T KOG0344|consen 511 GCEVPEKIMGIKK 523 (593)
T ss_pred CCcchHHHHhhhh
Confidence 9999999887764
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-45 Score=386.70 Aligned_cols=230 Identities=33% Similarity=0.504 Sum_probs=206.6
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
++|++++|++.+++.|.++||..||++|.++||.++.|+|++++||||||||++|++|+++++...+.. ...++++||
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~--~~~~~~~li 78 (434)
T PRK11192 1 TTFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR--KSGPPRILI 78 (434)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc--CCCCceEEE
Confidence 369999999999999999999999999999999999999999999999999999999999999764321 112578999
Q ss_pred EccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcc
Q 042373 201 MAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDE 241 (494)
Q Consensus 201 l~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDE 241 (494)
|+||+|||.|+ +||++|.+++..+ .++++++++|||||
T Consensus 79 l~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~---~~~~~~v~~lViDE 155 (434)
T PRK11192 79 LTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEE---NFDCRAVETLILDE 155 (434)
T ss_pred ECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC---CcCcccCCEEEEEC
Confidence 99999999996 7999999999874 34688999999999
Q ss_pred cchhcccCChhHHHHHHHhhcCCCcEEEecCCCCh-HHHHHHHh------------------------------------
Q 042373 242 ADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPP-RVEILARK------------------------------------ 284 (494)
Q Consensus 242 aD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~-~v~~l~~~------------------------------------ 284 (494)
||+|++++|...+..|...++..+|+++||||++. .+..++..
T Consensus 156 ah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~ 235 (434)
T PRK11192 156 ADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTAL 235 (434)
T ss_pred HHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHH
Confidence 99999999999999999999999999999999985 35555443
Q ss_pred ---------------------------------------------------------cCCccceeeccccccCCCCCCce
Q 042373 285 ---------------------------------------------------------TNVCNLSIANSVRARGLDEKELE 307 (494)
Q Consensus 285 ---------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~ 307 (494)
.|.++|||||++++||||+|+|+
T Consensus 236 l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 236 LCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred HHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 78999999999999999999999
Q ss_pred EEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHh
Q 042373 308 LVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFEL 355 (494)
Q Consensus 308 ~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~ 355 (494)
+|||||+|.+...|+||+||+|| .|.+++|++..+...+..+.+++..
T Consensus 316 ~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 316 HVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred EEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhc
Confidence 99999999999999999999655 7889999999999999888887654
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=387.17 Aligned_cols=246 Identities=30% Similarity=0.488 Sum_probs=215.7
Q ss_pred CCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC-CCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVP-GDDSP 196 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~-~~~~p 196 (494)
.....|.+++|++.|+++|.++||..||++|.++||.++.|+|+|++|+||||||++|++|+++.+...+.... ....+
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 34578999999999999999999999999999999999999999999999999999999999999986542211 11258
Q ss_pred eEEEEccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecccceEE
Q 042373 197 VGLVMAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 197 ~aLIl~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
++|||+|||+||.|+ +||++|.+++... ...|+++++
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~---~~~l~~l~~ 240 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG---EVHLDMVEV 240 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC---CcccccCce
Confidence 999999999999997 7999999888753 357899999
Q ss_pred EEEcccchhcccCChhHHHHHHHhhcC--CCcEEEecCCCChHHHHHHHh------------------------------
Q 042373 237 LVLDEADRMFDMGFEPQITRIVQNIRP--DRQAVLFSPTFPPRVEILARK------------------------------ 284 (494)
Q Consensus 237 lVlDEaD~ml~~gf~~~i~~Il~~l~~--~~Q~ilfSAT~~~~v~~l~~~------------------------------ 284 (494)
|||||||++++++|.+++..|+..++. .+|+++||||++..+..+++.
T Consensus 241 lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 320 (475)
T PRK01297 241 MVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGS 320 (475)
T ss_pred EEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecch
Confidence 999999999999999999999998864 679999999998877766543
Q ss_pred --------------------------------------------------------------cCCccceeeccccccCCC
Q 042373 285 --------------------------------------------------------------TNVCNLSIANSVRARGLD 302 (494)
Q Consensus 285 --------------------------------------------------------------~g~~~ILVaTdv~~rGlD 302 (494)
.|+++|||||++++||||
T Consensus 321 ~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GID 400 (475)
T PRK01297 321 DKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIH 400 (475)
T ss_pred hHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCc
Confidence 789999999999999999
Q ss_pred CCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhcc-Ccc-hHHHHH
Q 042373 303 EKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSE-LVV-RDDLKA 366 (494)
Q Consensus 303 i~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~-~~v-p~~l~~ 366 (494)
|++|++|||||+|.+..+|+||+||+|| .|.+|+|++++|..++..+++++.... .++ |.+|..
T Consensus 401 i~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T PRK01297 401 IDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK 469 (475)
T ss_pred ccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence 9999999999999999999999999766 678999999999999999999988764 343 445543
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=363.92 Aligned_cols=227 Identities=33% Similarity=0.535 Sum_probs=209.9
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
-.|.++||+..++++|.+.||..|||||+.+||.||.|+|++..|.||||||.||++||++++.... ..|.++||
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-----~~g~Rali 95 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-----QTGLRALI 95 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-----ccccceee
Confidence 5799999999999999999999999999999999999999999999999999999999999997543 23789999
Q ss_pred EccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcc
Q 042373 201 MAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDE 241 (494)
Q Consensus 201 l~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDE 241 (494)
++|||||+.|. +||||+..+...- .+.|+.+.|||+||
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem---~l~l~sveyVVfdE 172 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM---TLTLSSVEYVVFDE 172 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe---eccccceeeeeehh
Confidence 99999999997 6888887665542 25799999999999
Q ss_pred cchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-------------------------------------
Q 042373 242 ADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------------- 284 (494)
Q Consensus 242 aD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------- 284 (494)
||+|+.|||.+++..++.+++..+|+++||||+|..+..+++.
T Consensus 173 adrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl 252 (529)
T KOG0337|consen 173 ADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALL 252 (529)
T ss_pred hhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHH
Confidence 9999999999999999999999999999999999988777775
Q ss_pred --------------------------------------------------------cCCccceeeccccccCCCCCCceE
Q 042373 285 --------------------------------------------------------TNVCNLSIANSVRARGLDEKELEL 308 (494)
Q Consensus 285 --------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~ 308 (494)
.++..+||.||+++||+|||..+.
T Consensus 253 ~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldn 332 (529)
T KOG0337|consen 253 SILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDN 332 (529)
T ss_pred HHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccc
Confidence 678889999999999999999999
Q ss_pred EEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHHHHHHHh
Q 042373 309 VINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDLVKAFEL 355 (494)
Q Consensus 309 VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~~~l~~ 355 (494)
|||||+|.+..-|+||+|| +|+.|++|+||.+.+..++-+|.-++..
T Consensus 333 vinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 333 VINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred cccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 9999999999999999999 7999999999999999999999887764
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=367.41 Aligned_cols=235 Identities=28% Similarity=0.461 Sum_probs=212.4
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
...+|++++|++.++++|.++||..|||+|.++|+.+++|+|++++||||||||++|++|+++++... ..++++
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~------~~~~~~ 99 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD------LNACQA 99 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC------CCCceE
Confidence 36889999999999999999999999999999999999999999999999999999999999987432 126789
Q ss_pred EEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 199 LVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 199 LIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
|||+||++|+.|+ +||++|.+++..+. ..++++++||+
T Consensus 100 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~---~~l~~i~lvVi 176 (401)
T PTZ00424 100 LILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH---LRVDDLKLFIL 176 (401)
T ss_pred EEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC---cccccccEEEE
Confidence 9999999999997 78999998887643 46899999999
Q ss_pred cccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------
Q 042373 240 DEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------- 284 (494)
Q Consensus 240 DEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------- 284 (494)
||||++++.+|...+..++..+++..|++++|||+|+.+..+...
T Consensus 177 DEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (401)
T PTZ00424 177 DEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFD 256 (401)
T ss_pred ecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHH
Confidence 999999999999999999999999999999999999887665543
Q ss_pred ----------------------------------------------------------cCCccceeeccccccCCCCCCc
Q 042373 285 ----------------------------------------------------------TNVCNLSIANSVRARGLDEKEL 306 (494)
Q Consensus 285 ----------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v 306 (494)
.|+++|||||++++||||+|++
T Consensus 257 ~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v 336 (401)
T PTZ00424 257 TLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQV 336 (401)
T ss_pred HHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccC
Confidence 7899999999999999999999
Q ss_pred eEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCcchH
Q 042373 307 ELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELVVRD 362 (494)
Q Consensus 307 ~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~ 362 (494)
++|||||+|.+...|+||+||+|| .|.|++|+++++...+..+++.+.....+.|.
T Consensus 337 ~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 337 SLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred CEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCc
Confidence 999999999999999999999765 78899999999999999998888876666554
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=343.36 Aligned_cols=242 Identities=31% Similarity=0.497 Sum_probs=217.3
Q ss_pred CCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDS 195 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~ 195 (494)
-.+++|++|+|.|++++.|..|+|.+|+.||..|+|.+|.. +|+|+++..|+|||.||.|.||.++.. ....
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~------~~~~ 160 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP------DVVV 160 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc------cccC
Confidence 45789999999999999999999999999999999999987 899999999999999999999998743 2337
Q ss_pred CeEEEEccchhHHHhh------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 196 PVGLVMAPTGELVRQQ------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
|+++-|+||||||.|+ +|||.+.|++.. .+++.++.++.+|+
T Consensus 161 PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~k--lk~id~~kikvfVl 238 (477)
T KOG0332|consen 161 PQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLK--LKCIDLEKIKVFVL 238 (477)
T ss_pred CCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHH--HHhhChhhceEEEe
Confidence 9999999999999998 799999999986 35678999999999
Q ss_pred cccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh----------------------------------
Q 042373 240 DEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK---------------------------------- 284 (494)
Q Consensus 240 DEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~---------------------------------- 284 (494)
||||.|++ .||.++-.+|...++++.|+++||||+...+..++.+
T Consensus 239 DEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~ 318 (477)
T KOG0332|consen 239 DEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKY 318 (477)
T ss_pred cchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHH
Confidence 99999997 5799999999999999999999999999999999987
Q ss_pred -----------------------------------------------------------cCCccceeeccccccCCCCCC
Q 042373 285 -----------------------------------------------------------TNVCNLSIANSVRARGLDEKE 305 (494)
Q Consensus 285 -----------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~ 305 (494)
.|..+|||+|+|++||||++.
T Consensus 319 ~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~q 398 (477)
T KOG0332|consen 319 QALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQ 398 (477)
T ss_pred HHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccce
Confidence 799999999999999999999
Q ss_pred ceEEEecCCCC------CHhHHHhhhcc---CCCcceEEEEeccc-CHHHHHHHHHHHHhcc-CcchHHHHHH
Q 042373 306 LELVINFDAPN------DYEDYVHHCCQ---SWLKSCAFRFISEE-NAIYATDLVKAFELSE-LVVRDDLKAV 367 (494)
Q Consensus 306 v~~VInyd~P~------s~~~yvhR~GR---aGr~G~aitfv~~~-~~~~~~~i~~~l~~~~-~~vp~~l~~~ 367 (494)
|++|||||+|. +.+.|+||+|| .|++|.+|.|+... ....+..|.++++... ...|.++.++
T Consensus 399 Vs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~ 471 (477)
T KOG0332|consen 399 VSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDEL 471 (477)
T ss_pred EEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHHH
Confidence 99999999995 78999999999 56699999999865 6778889999986543 4456666554
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=348.79 Aligned_cols=240 Identities=31% Similarity=0.473 Sum_probs=222.1
Q ss_pred CCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCC
Q 042373 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSP 196 (494)
Q Consensus 117 P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p 196 (494)
-+.+.+|++++|++.|++.+...||++|+.||+.||+++..|+|+++.+++|+|||.+|.+++++++-.. ....
T Consensus 22 ~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~------~ke~ 95 (397)
T KOG0327|consen 22 NEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS------VKET 95 (397)
T ss_pred HHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc------hHHH
Confidence 3446799999999999999999999999999999999999999999999999999999999999998322 2267
Q ss_pred eEEEEccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecccceEE
Q 042373 197 VGLVMAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 197 ~aLIl~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
+||+++||||||.|+ +||||+.+++..+ .+....+++
T Consensus 96 qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~---~l~~~~iKm 172 (397)
T KOG0327|consen 96 QALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG---SLSTDGIKM 172 (397)
T ss_pred HHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc---cccccceeE
Confidence 899999999999998 7999999999875 346778999
Q ss_pred EEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh--------------------------------
Q 042373 237 LVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK-------------------------------- 284 (494)
Q Consensus 237 lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~-------------------------------- 284 (494)
+|+||||.|+..||.++|..|+++++++.|+++||||+|+++..+.++
T Consensus 173 fvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k 252 (397)
T KOG0327|consen 173 FVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEK 252 (397)
T ss_pred EeecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeecccccc
Confidence 999999999999999999999999999999999999999999988876
Q ss_pred ----------------------------------------------------------cCCccceeeccccccCCCCCCc
Q 042373 285 ----------------------------------------------------------TNVCNLSIANSVRARGLDEKEL 306 (494)
Q Consensus 285 ----------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v 306 (494)
.|..+|||.|++++||||+.++
T Consensus 253 ~~~l~dl~~~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~ 332 (397)
T KOG0327|consen 253 LDTLCDLYRRVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQV 332 (397)
T ss_pred ccHHHHHHHhhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhc
Confidence 7999999999999999999999
Q ss_pred eEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHHHHHHHhccCcchHHHH
Q 042373 307 ELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDLVKAFELSELVVRDDLK 365 (494)
Q Consensus 307 ~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~ 365 (494)
.+|||||+|...++|+||+|| .|++|.+++|++..+.+.+.++.+++.....+.|....
T Consensus 333 slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~ 394 (397)
T KOG0327|consen 333 SLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFA 394 (397)
T ss_pred ceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchh
Confidence 999999999999999999999 56799999999999999999999999988888886553
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=350.94 Aligned_cols=242 Identities=24% Similarity=0.368 Sum_probs=196.3
Q ss_pred HHHHHHHHhCCCCCCChhHHHHHHHHH---------cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 130 TKILETFSKLNHENPVAIQAPASALII---------SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 130 ~~ll~~l~~~g~~~ptpiQ~~aip~il---------~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
..+.+.|.++++...+|+|.+++|.++ .++|+.+.||||||||+||.|||++.+..++- +..+|||
T Consensus 146 a~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v-----~~LRavV 220 (620)
T KOG0350|consen 146 ATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPV-----KRLRAVV 220 (620)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCc-----cceEEEE
Confidence 344556899999999999999999996 36899999999999999999999999976531 2578999
Q ss_pred EccchhHHHhh--------------------------------------------hhhhHHHHHHHhcCcceecccceEE
Q 042373 201 MAPTGELVRQQ--------------------------------------------VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 201 l~PTreLa~Qi--------------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
|+|||+|+.|+ +|||||+|+|.+. +-++|++++|
T Consensus 221 ivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~--k~f~Lk~Lrf 298 (620)
T KOG0350|consen 221 IVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNT--KSFDLKHLRF 298 (620)
T ss_pred EeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCC--CCcchhhceE
Confidence 99999999998 7999999999864 4579999999
Q ss_pred EEEcccchhcccCChhHHHHHHHhhcC----------------------------------CCcEEEecCCCChHHHHHH
Q 042373 237 LVLDEADRMFDMGFEPQITRIVQNIRP----------------------------------DRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 237 lVlDEaD~ml~~gf~~~i~~Il~~l~~----------------------------------~~Q~ilfSAT~~~~v~~l~ 282 (494)
+|+||||||++..|..++..++.++.. ..+.++||||+...-..+.
T Consensus 299 LVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~ 378 (620)
T KOG0350|consen 299 LVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLK 378 (620)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHh
Confidence 999999999998777766655544321 1256788888765544444
Q ss_pred Hh------------------------------------------------------------------------------
Q 042373 283 RK------------------------------------------------------------------------------ 284 (494)
Q Consensus 283 ~~------------------------------------------------------------------------------ 284 (494)
..
T Consensus 379 ~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~ 458 (620)
T KOG0350|consen 379 DLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNF 458 (620)
T ss_pred hhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccc
Confidence 32
Q ss_pred ----------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEec
Q 042373 285 ----------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFIS 339 (494)
Q Consensus 285 ----------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~ 339 (494)
.|.+++|||||+++||||+.+|+.|||||+|.+...||||+|| ||+.|.||++++
T Consensus 459 ~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~ 538 (620)
T KOG0350|consen 459 KVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLD 538 (620)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeec
Confidence 7999999999999999999999999999999999999999999 899999999999
Q ss_pred ccCHHHHHHHHHHHHh----ccCcchHHH-HHHHHHHHHHHhcc
Q 042373 340 EENAIYATDLVKAFEL----SELVVRDDL-KAVADSFIAKVNLG 378 (494)
Q Consensus 340 ~~~~~~~~~i~~~l~~----~~~~vp~~l-~~~~~~~~~~~~~~ 378 (494)
..+.+.+..+.+.... ..+++|... ..+...|...+...
T Consensus 539 ~~~~r~F~klL~~~~~~d~~~i~~~e~~~~~~~~~~Yt~ALEsL 582 (620)
T KOG0350|consen 539 KHEKRLFSKLLKKTNLWDGVEIQPIEYIFIKDEDDRYTKALESL 582 (620)
T ss_pred cccchHHHHHHHHhcccCCcceeecCchHHHHHHHHHHHHHHHH
Confidence 9999888888776554 445555333 33333555444433
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=347.16 Aligned_cols=220 Identities=27% Similarity=0.426 Sum_probs=199.8
Q ss_pred CCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 115 ~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
-.|.-...|+++-|...++..|++.+|..||+||..|||.++++-|+|++|..|+|||+.|.+.+++.+..+ ..
T Consensus 19 V~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~------~~ 92 (980)
T KOG4284|consen 19 VQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR------SS 92 (980)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc------cC
Confidence 345566789999999999999999999999999999999999999999999999999999999888877432 23
Q ss_pred CCeEEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceE
Q 042373 195 SPVGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
.++++|++||||+|.|| +||||+..++.. ..++.+.|+
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el---~~~n~s~vr 169 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVEL---GAMNMSHVR 169 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHh---cCCCcccee
Confidence 78999999999999998 799999999886 467899999
Q ss_pred EEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh------------------------------
Q 042373 236 YLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------ 284 (494)
Q Consensus 236 ~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------ 284 (494)
++||||||.|++ ..|.++|..|+..+|..+|++.||||.|..+..+..+
T Consensus 170 lfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~ 249 (980)
T KOG4284|consen 170 LFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSP 249 (980)
T ss_pred EEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCC
Confidence 999999999999 5699999999999999999999999999988766655
Q ss_pred ----------------------------------------------------------------------cCCccceeec
Q 042373 285 ----------------------------------------------------------------------TNVCNLSIAN 294 (494)
Q Consensus 285 ----------------------------------------------------------------------~g~~~ILVaT 294 (494)
.-.++|||+|
T Consensus 250 nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsT 329 (980)
T KOG4284|consen 250 NNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVST 329 (980)
T ss_pred cchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEec
Confidence 5678999999
Q ss_pred cccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCH
Q 042373 295 SVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENA 343 (494)
Q Consensus 295 dv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~ 343 (494)
|+.+||||-++|++|||.|.|.+.++|.|||||||| .|.++||+.....
T Consensus 330 DLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 330 DLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred chhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999776 7889999987643
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=358.01 Aligned_cols=223 Identities=19% Similarity=0.202 Sum_probs=183.8
Q ss_pred CCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchh
Q 042373 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE 206 (494)
Q Consensus 127 ~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTre 206 (494)
.|++.|.+.|+++||.+||++|.++||.++.|+|+++++|||||||+||++|+++.+...+ ++++|||+||||
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~-------~~~aL~l~Ptra 92 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP-------RATALYLAPTKA 92 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC-------CcEEEEEcChHH
Confidence 4899999999999999999999999999999999999999999999999999999997532 679999999999
Q ss_pred HHHhh-------------------------------------hhhhHHHHHHH-hcCcceecccceEEEEEcccchhccc
Q 042373 207 LVRQQ-------------------------------------VRRGRMIDLLC-KNGVKITNLTRVTYLVLDEADRMFDM 248 (494)
Q Consensus 207 La~Qi-------------------------------------~TPgrl~dll~-~~~~~~~~l~~l~~lVlDEaD~ml~~ 248 (494)
||.|+ +||++|...+. ........|+++++|||||||+|.+
T Consensus 93 La~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g- 171 (742)
T TIGR03817 93 LAADQLRAVRELTLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG- 171 (742)
T ss_pred HHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-
Confidence 99998 67877754322 1111112378999999999999986
Q ss_pred CChhHHHHHHHhh-------cCCCcEEEecCCCChHHHHHHH--------------------------------------
Q 042373 249 GFEPQITRIVQNI-------RPDRQAVLFSPTFPPRVEILAR-------------------------------------- 283 (494)
Q Consensus 249 gf~~~i~~Il~~l-------~~~~Q~ilfSAT~~~~v~~l~~-------------------------------------- 283 (494)
.|..++..++.++ +.++|+++||||+++..+...+
T Consensus 172 ~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 251 (742)
T TIGR03817 172 VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAP 251 (742)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccc
Confidence 4777777666554 4578999999998754331100
Q ss_pred --------h------------------------------------------------------------------cCCcc
Q 042373 284 --------K------------------------------------------------------------------TNVCN 289 (494)
Q Consensus 284 --------~------------------------------------------------------------------~g~~~ 289 (494)
. +|+++
T Consensus 252 ~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~ 331 (742)
T TIGR03817 252 VRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELL 331 (742)
T ss_pred cccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCce
Confidence 0 78999
Q ss_pred ceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEec--ccCHHHHHHHHHHHHhcc
Q 042373 290 LSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFIS--EENAIYATDLVKAFELSE 357 (494)
Q Consensus 290 ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~--~~~~~~~~~i~~~l~~~~ 357 (494)
+||||++++|||||++|++|||||+|.+..+|+||+||+|| .|.+++|++ +.+..++..+.++++...
T Consensus 332 vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~ 404 (742)
T TIGR03817 332 GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPV 404 (742)
T ss_pred EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCC
Confidence 99999999999999999999999999999999999999666 578998886 346667777777777543
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=305.19 Aligned_cols=233 Identities=27% Similarity=0.435 Sum_probs=206.2
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
+-|.++-|.++|++++-.+||+.|+.+|..|||...-|-|+++.|..|.|||..|++..++.+- +..+...+|+
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie------pv~g~vsvlv 115 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE------PVDGQVSVLV 115 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC------CCCCeEEEEE
Confidence 5588889999999999999999999999999999999999999999999999999999998873 3333567999
Q ss_pred EccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEc
Q 042373 201 MAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLD 240 (494)
Q Consensus 201 l~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlD 240 (494)
+|.|||||-|| +||||++.+..++ .++|++++++|+|
T Consensus 116 mchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k---~l~lk~vkhFvlD 192 (387)
T KOG0329|consen 116 MCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR---SLNLKNVKHFVLD 192 (387)
T ss_pred EeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc---cCchhhcceeehh
Confidence 99999999999 7999999988874 5689999999999
Q ss_pred ccchhccc-CChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------
Q 042373 241 EADRMFDM-GFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------- 284 (494)
Q Consensus 241 EaD~ml~~-gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------- 284 (494)
|||.|+++ ..+..++.|++..|.+.|+++||||+++++...+++
T Consensus 193 Ecdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNr 272 (387)
T KOG0329|consen 193 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNR 272 (387)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhh
Confidence 99999864 568899999999999999999999999999988887
Q ss_pred ------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEE
Q 042373 285 ------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRF 337 (494)
Q Consensus 285 ------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitf 337 (494)
+-..+ +|||+++.||+||..|+.|||||+|.+..+|+||+||||| +|.+|+|
T Consensus 273 kl~dLLd~LeFNQVvIFvKsv~Rl~f~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitf 351 (387)
T KOG0329|consen 273 KLNDLLDVLEFNQVVIFVKSVQRLSFQKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 351 (387)
T ss_pred hhhhhhhhhhhcceeEeeehhhhhhhhhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeeh
Confidence 01122 8999999999999999999999999999999999999766 7889999
Q ss_pred eccc-CHHHHHHHHHHHHhccCcchHH
Q 042373 338 ISEE-NAIYATDLVKAFELSELVVRDD 363 (494)
Q Consensus 338 v~~~-~~~~~~~i~~~l~~~~~~vp~~ 363 (494)
++.. +...+..+..-++....++|+.
T Consensus 352 vs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 352 VSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred hcchhhHHHhchhhHhhhccHhhcCcc
Confidence 9864 6777787777777777777765
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=342.26 Aligned_cols=217 Identities=21% Similarity=0.334 Sum_probs=174.2
Q ss_pred Cccc--CCCCHHHHHHHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 122 TWRQ--TGLTTKILETFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 122 ~f~~--l~L~~~ll~~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
.|.. ++....+...+++ +||..++|+|.++|+.++.|+|+|+++|||+|||+||+||++.. +..+
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------------~GiT 503 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------------PGIT 503 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------------CCcE
Confidence 4664 4555666666654 89999999999999999999999999999999999999999853 4579
Q ss_pred EEEccchhHHHhh-----------------------------------------hhhhHHH--HHHHhcCcceecccceE
Q 042373 199 LVMAPTGELVRQQ-----------------------------------------VRRGRMI--DLLCKNGVKITNLTRVT 235 (494)
Q Consensus 199 LIl~PTreLa~Qi-----------------------------------------~TPgrl~--dll~~~~~~~~~l~~l~ 235 (494)
|||+|+++|+.++ +||++|. +.+...-........+.
T Consensus 504 LVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~Ls 583 (1195)
T PLN03137 504 LVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLA 583 (1195)
T ss_pred EEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccc
Confidence 9999999999743 5777764 22221100111234589
Q ss_pred EEEEcccchhcccC--ChhHHHHH--HHhhcCCCcEEEecCCCChHHHHHHHh---------------------------
Q 042373 236 YLVLDEADRMFDMG--FEPQITRI--VQNIRPDRQAVLFSPTFPPRVEILARK--------------------------- 284 (494)
Q Consensus 236 ~lVlDEaD~ml~~g--f~~~i~~I--l~~l~~~~Q~ilfSAT~~~~v~~l~~~--------------------------- 284 (494)
+|||||||+|++|| |++.+..+ +...-+.+|+++||||+++.+...+..
T Consensus 584 lIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~ 663 (1195)
T PLN03137 584 RFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKT 663 (1195)
T ss_pred eeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccc
Confidence 99999999999998 88887764 444446789999999999876643221
Q ss_pred ----------------------------------------------------------------cCCccceeeccccccC
Q 042373 285 ----------------------------------------------------------------TNVCNLSIANSVRARG 300 (494)
Q Consensus 285 ----------------------------------------------------------------~g~~~ILVaTdv~~rG 300 (494)
.|.++|||||++++||
T Consensus 664 kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMG 743 (1195)
T PLN03137 664 KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMG 743 (1195)
T ss_pred hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcC
Confidence 7899999999999999
Q ss_pred CCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHH
Q 042373 301 LDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLV 350 (494)
Q Consensus 301 lDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~ 350 (494)
||+|+|++|||||+|.+++.|+||+||+|| .|.|++|++..|...+..+.
T Consensus 744 IDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 744 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred CCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 999999999999999999999999999887 55799999887766555554
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=319.60 Aligned_cols=200 Identities=19% Similarity=0.294 Sum_probs=164.6
Q ss_pred hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------
Q 042373 138 KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------ 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------ 211 (494)
.+||..|+|+|.++|+.+++|+|+++++|||||||++|++|++.. +..+|||+|||+|+.|+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------------~~~~lVi~P~~~L~~dq~~~l~~ 73 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------------DGITLVISPLISLMEDQVLQLKA 73 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------------CCcEEEEecHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999842 45799999999999876
Q ss_pred ---------------------------------hhhhHHHHHHHhcCccee-cccceEEEEEcccchhcccC--ChhHHH
Q 042373 212 ---------------------------------VRRGRMIDLLCKNGVKIT-NLTRVTYLVLDEADRMFDMG--FEPQIT 255 (494)
Q Consensus 212 ---------------------------------~TPgrl~dll~~~~~~~~-~l~~l~~lVlDEaD~ml~~g--f~~~i~ 255 (494)
+||+++...... ...+ .+.++.+||+||||++++|| |++.+.
T Consensus 74 ~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~--~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~ 151 (470)
T TIGR00614 74 SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRL--LQTLEERKGITLIAVDEAHCISQWGHDFRPDYK 151 (470)
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhH--HHHHHhcCCcCEEEEeCCcccCccccccHHHHH
Confidence 356654321100 0011 46789999999999999988 777776
Q ss_pred HH--HHhhcCCCcEEEecCCCChHHHHHHHh-------------------------------------------------
Q 042373 256 RI--VQNIRPDRQAVLFSPTFPPRVEILARK------------------------------------------------- 284 (494)
Q Consensus 256 ~I--l~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------------------- 284 (494)
.+ +....++.|+++||||+++.+......
T Consensus 152 ~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~II 231 (470)
T TIGR00614 152 ALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGII 231 (470)
T ss_pred HHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEE
Confidence 65 233336789999999998876433221
Q ss_pred ------------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHH
Q 042373 285 ------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYV 322 (494)
Q Consensus 285 ------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yv 322 (494)
.|.++|||||++++||||+|+|++||||++|.+.+.|+
T Consensus 232 F~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~ 311 (470)
T TIGR00614 232 YCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYY 311 (470)
T ss_pred EECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHH
Confidence 78999999999999999999999999999999999999
Q ss_pred hhhccCCC---cceEEEEecccCHHHHHHHHH
Q 042373 323 HHCCQSWL---KSCAFRFISEENAIYATDLVK 351 (494)
Q Consensus 323 hR~GRaGr---~G~aitfv~~~~~~~~~~i~~ 351 (494)
||+||+|| .|.|++|+++.+...++.+..
T Consensus 312 Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 312 QESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred hhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 99999777 568999999988877776654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=319.11 Aligned_cols=209 Identities=18% Similarity=0.265 Sum_probs=164.7
Q ss_pred CCCHHHHHHHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch
Q 042373 127 GLTTKILETFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG 205 (494)
Q Consensus 127 ~L~~~ll~~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr 205 (494)
.+.....+.|++ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. +..+|||+|++
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------------~g~tlVisPl~ 75 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------------DGLTLVVSPLI 75 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------------CCCEEEEecHH
Confidence 344444455544 79999999999999999999999999999999999999999843 34799999999
Q ss_pred hHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhc
Q 042373 206 ELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 206 eLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml 246 (494)
+|+.|+ +||+++...... ..+...++.+||+||||++.
T Consensus 76 sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~---~~l~~~~l~~iVIDEaH~i~ 152 (607)
T PRK11057 76 SLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL---EHLAHWNPALLAVDEAHCIS 152 (607)
T ss_pred HHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH---HHHhhCCCCEEEEeCccccc
Confidence 999886 344444311000 01223478999999999999
Q ss_pred ccC--ChhHHHHHH--HhhcCCCcEEEecCCCChHHHHHH-Hh-------------------------------------
Q 042373 247 DMG--FEPQITRIV--QNIRPDRQAVLFSPTFPPRVEILA-RK------------------------------------- 284 (494)
Q Consensus 247 ~~g--f~~~i~~Il--~~l~~~~Q~ilfSAT~~~~v~~l~-~~------------------------------------- 284 (494)
+|| |++.+..+. ...-+..|+++||||.++.+.... ..
T Consensus 153 ~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~ 232 (607)
T PRK11057 153 QWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKFKPLDQLMRYVQ 232 (607)
T ss_pred cccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeeccchHHHHHHHHH
Confidence 987 777765552 222367899999999987664321 11
Q ss_pred ---------------------------------------------------cCCccceeeccccccCCCCCCceEEEecC
Q 042373 285 ---------------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFD 313 (494)
Q Consensus 285 ---------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd 313 (494)
.|.++|||||+++++|||+|+|++|||||
T Consensus 233 ~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d 312 (607)
T PRK11057 233 EQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred hcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeC
Confidence 78999999999999999999999999999
Q ss_pred CCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHH
Q 042373 314 APNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLV 350 (494)
Q Consensus 314 ~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~ 350 (494)
+|.+.+.|+||+||+|| .|.|++|+++.+...++.+.
T Consensus 313 ~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 313 IPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred CCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999887 45799999998876655443
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=314.74 Aligned_cols=209 Identities=21% Similarity=0.236 Sum_probs=180.6
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHH-HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASAL-IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~-il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
+.|++++|++.+++.+++.||.+|+|+|.+|++. ++.|+|++++||||||||++|.+|+++++.. +.++|
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---------~~kal 71 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---------GGKAL 71 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------CCcEE
Confidence 3689999999999999999999999999999998 7899999999999999999999999999852 56899
Q ss_pred EEccchhHHHhh-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccch
Q 042373 200 VMAPTGELVRQQ-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADR 244 (494)
Q Consensus 200 Il~PTreLa~Qi-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ 244 (494)
||+|||+||.|+ +||+++..++.... ..++++++||+||+|+
T Consensus 72 ~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~---~~l~~v~lvViDE~H~ 148 (737)
T PRK02362 72 YIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGA---PWLDDITCVVVDEVHL 148 (737)
T ss_pred EEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcCh---hhhhhcCEEEEECccc
Confidence 999999999997 79999987776532 3478999999999999
Q ss_pred hcccCChhHHHHHHHhh---cCCCcEEEecCCCCh--HHHHHHH------------------------------------
Q 042373 245 MFDMGFEPQITRIVQNI---RPDRQAVLFSPTFPP--RVEILAR------------------------------------ 283 (494)
Q Consensus 245 ml~~gf~~~i~~Il~~l---~~~~Q~ilfSAT~~~--~v~~l~~------------------------------------ 283 (494)
|.+.++.+.++.++..+ .+..|++++|||+++ .+..+..
T Consensus 149 l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~ 228 (737)
T PRK02362 149 IDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPS 228 (737)
T ss_pred cCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCcc
Confidence 99989999998887766 467899999999854 1110000
Q ss_pred ---------h----------------------------------------------------------------------
Q 042373 284 ---------K---------------------------------------------------------------------- 284 (494)
Q Consensus 284 ---------~---------------------------------------------------------------------- 284 (494)
.
T Consensus 229 ~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~ 308 (737)
T PRK02362 229 KDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAF 308 (737)
T ss_pred chHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEe
Confidence 0
Q ss_pred ------------------cCCccceeeccccccCCCCCCceEEEe----cC-----CCCCHhHHHhhhccCCCc-----c
Q 042373 285 ------------------TNVCNLSIANSVRARGLDEKELELVIN----FD-----APNDYEDYVHHCCQSWLK-----S 332 (494)
Q Consensus 285 ------------------~g~~~ILVaTdv~~rGlDi~~v~~VIn----yd-----~P~s~~~yvhR~GRaGr~-----G 332 (494)
.|.++|||||+++++|+|+|.+++||+ || .|.+..+|+||+|||||. |
T Consensus 309 hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G 388 (737)
T PRK02362 309 HHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYG 388 (737)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCc
Confidence 788999999999999999999999998 77 688999999999999984 7
Q ss_pred eEEEEeccc
Q 042373 333 CAFRFISEE 341 (494)
Q Consensus 333 ~aitfv~~~ 341 (494)
.++.|+...
T Consensus 389 ~~ii~~~~~ 397 (737)
T PRK02362 389 EAVLLAKSY 397 (737)
T ss_pred eEEEEecCc
Confidence 788888664
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=321.13 Aligned_cols=211 Identities=18% Similarity=0.217 Sum_probs=166.5
Q ss_pred CCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH
Q 042373 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL 207 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL 207 (494)
|++.+.+.+++ +|..|||+|.++||.+++|+|++++||||||||++|++|+++++...........++++|||+|||+|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 66666666555 79999999999999999999999999999999999999999999754322111337889999999999
Q ss_pred HHhh---------------------------------------------------hhhhHHHHHHHhcCcceecccceEE
Q 042373 208 VRQQ---------------------------------------------------VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 208 a~Qi---------------------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
+.|+ +||++|..++..... ...|+++++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~-~~~l~~l~~ 175 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKF-REKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhH-HHHHhcCCE
Confidence 8764 688888777754321 125789999
Q ss_pred EEEcccchhcccCChhHHHHHHHhh----cCCCcEEEecCCCCh--HHHHHH----------------------------
Q 042373 237 LVLDEADRMFDMGFEPQITRIVQNI----RPDRQAVLFSPTFPP--RVEILA---------------------------- 282 (494)
Q Consensus 237 lVlDEaD~ml~~gf~~~i~~Il~~l----~~~~Q~ilfSAT~~~--~v~~l~---------------------------- 282 (494)
||+||+|.|++..+..++..++.++ ++..|++++|||+++ .+..+.
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 9999999999877666655554443 467899999999864 111100
Q ss_pred --------------------------Hh----------------------------------------------------
Q 042373 283 --------------------------RK---------------------------------------------------- 284 (494)
Q Consensus 283 --------------------------~~---------------------------------------------------- 284 (494)
..
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~ 335 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEK 335 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHH
Confidence 00
Q ss_pred --cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCc----ceEEEEecc
Q 042373 285 --TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLK----SCAFRFISE 340 (494)
Q Consensus 285 --~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~----G~aitfv~~ 340 (494)
+|.++|||||+++++|||+++|++||+|+.|.+...|+||+||+||. +.++.++..
T Consensus 336 fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 336 LKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 78999999999999999999999999999999999999999998874 235544443
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=305.36 Aligned_cols=200 Identities=19% Similarity=0.296 Sum_probs=161.3
Q ss_pred HHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--
Q 042373 135 TFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-- 211 (494)
Q Consensus 135 ~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-- 211 (494)
.|++ +||.+++|+|.++|+.++.|+|+++++|||+|||++|++|++.+ +..+|||+|+++|+.|+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------------~g~~lVisPl~sL~~dq~~ 71 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------------KGLTVVISPLISLMKDQVD 71 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------------CCcEEEEcCCHHHHHHHHH
Confidence 4544 89999999999999999999999999999999999999999842 34689999999999876
Q ss_pred -------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccC--Chh
Q 042373 212 -------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG--FEP 252 (494)
Q Consensus 212 -------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~g--f~~ 252 (494)
+||+++...... ..+...++.+||+||||++.+|| |++
T Consensus 72 ~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~---~~l~~~~l~~iViDEaH~i~~~g~~frp 148 (591)
T TIGR01389 72 QLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL---NMLQRIPIALVAVDEAHCVSQWGHDFRP 148 (591)
T ss_pred HHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH---HHHhcCCCCEEEEeCCcccccccCccHH
Confidence 355554321111 12345689999999999999987 788
Q ss_pred HHHHHHHhh--cCCCcEEEecCCCChHHHHHHHh----------------------------------------------
Q 042373 253 QITRIVQNI--RPDRQAVLFSPTFPPRVEILARK---------------------------------------------- 284 (494)
Q Consensus 253 ~i~~Il~~l--~~~~Q~ilfSAT~~~~v~~l~~~---------------------------------------------- 284 (494)
.+..+.... -+..++++||||.++.+......
T Consensus 149 ~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~I 228 (591)
T TIGR01389 149 EYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKNNKQKFLLDYLKKHRGQSGI 228 (591)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCCCHHHHHHHHHHhcCCCCEE
Confidence 776664432 23556999999999887643332
Q ss_pred -------------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHH
Q 042373 285 -------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDY 321 (494)
Q Consensus 285 -------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~y 321 (494)
.|.++|||||+++++|||+|+|++||||++|.+.+.|
T Consensus 229 If~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y 308 (591)
T TIGR01389 229 IYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESY 308 (591)
T ss_pred EEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHH
Confidence 6899999999999999999999999999999999999
Q ss_pred HhhhccCCC---cceEEEEecccCHHHHHHH
Q 042373 322 VHHCCQSWL---KSCAFRFISEENAIYATDL 349 (494)
Q Consensus 322 vhR~GRaGr---~G~aitfv~~~~~~~~~~i 349 (494)
+||+||+|| .|.|++|+++.+...+..+
T Consensus 309 ~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 309 YQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred hhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 999999887 4579999888776544433
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=307.44 Aligned_cols=210 Identities=15% Similarity=0.153 Sum_probs=181.1
Q ss_pred CcccCCCCHHHHHHHHhCCCCCCChhHHHHHHH-HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASAL-IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 122 ~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~-il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
+|+++++++.+.+.|++.||.+|+|+|.++++. ++.|+|++++||||||||++|.+|+++++... +.++||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--------~~~~l~ 73 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--------GGKAVY 73 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--------CCeEEE
Confidence 688999999999999999999999999999996 88999999999999999999999999998642 568999
Q ss_pred EccchhHHHhh-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchh
Q 042373 201 MAPTGELVRQQ-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRM 245 (494)
Q Consensus 201 l~PTreLa~Qi-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~m 245 (494)
|+||++||.|+ +||+++..++.... ..++++++||+||+|.+
T Consensus 74 l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~---~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 74 LVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGS---SWIKDVKLVVADEIHLI 150 (720)
T ss_pred EeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCc---hhhhcCCEEEEcCcCcc
Confidence 99999999987 78999877776432 35789999999999999
Q ss_pred cccCChhHHHHHHHhhcCCCcEEEecCCCChHH--H--------------------------------------------
Q 042373 246 FDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRV--E-------------------------------------------- 279 (494)
Q Consensus 246 l~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v--~-------------------------------------------- 279 (494)
.+.++...++.++.++....|++++|||+++.- .
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGNAEELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESL 230 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCCHHHHHHHhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHH
Confidence 999999999999999999999999999974200 0
Q ss_pred --HHHH-----------------------------------------------------------h--------------
Q 042373 280 --ILAR-----------------------------------------------------------K-------------- 284 (494)
Q Consensus 280 --~l~~-----------------------------------------------------------~-------------- 284 (494)
.+.. .
T Consensus 231 ~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR 310 (720)
T PRK00254 231 VYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTER 310 (720)
T ss_pred HHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHH
Confidence 0000 0
Q ss_pred --------cCCccceeeccccccCCCCCCceEEEe-------cCCCC-CHhHHHhhhccCCC-----cceEEEEecccC
Q 042373 285 --------TNVCNLSIANSVRARGLDEKELELVIN-------FDAPN-DYEDYVHHCCQSWL-----KSCAFRFISEEN 342 (494)
Q Consensus 285 --------~g~~~ILVaTdv~~rGlDi~~v~~VIn-------yd~P~-s~~~yvhR~GRaGr-----~G~aitfv~~~~ 342 (494)
.|.++|||||+++++|+|+|.+++||. |+.|. +..+|+||+||||| .|.+++|++..+
T Consensus 311 ~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 311 VLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 788999999999999999999999993 66654 57799999999998 488999988654
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=289.58 Aligned_cols=206 Identities=16% Similarity=0.169 Sum_probs=171.5
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
+.|++++|++.+++.+.+.+|+ ++|+|.++++.+++|+|++++||||||||++|.+++++++.. +.++||
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---------~~k~v~ 70 (674)
T PRK01172 1 MKISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---------GLKSIY 70 (674)
T ss_pred CcHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------CCcEEE
Confidence 3578899999999999999997 999999999999999999999999999999999999998854 458999
Q ss_pred EccchhHHHhh-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchh
Q 042373 201 MAPTGELVRQQ-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRM 245 (494)
Q Consensus 201 l~PTreLa~Qi-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~m 245 (494)
++|+|+||.|+ +||+++..++.+. ...++++++||+||||++
T Consensus 71 i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~---~~~l~~v~lvViDEaH~l 147 (674)
T PRK01172 71 IVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHD---PYIINDVGLIVADEIHII 147 (674)
T ss_pred EechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCC---hhHHhhcCEEEEecchhc
Confidence 99999999997 7899887776653 235889999999999999
Q ss_pred cccCChhHHHHHHHhh---cCCCcEEEecCCCChHHHHHHHh--------------------------------------
Q 042373 246 FDMGFEPQITRIVQNI---RPDRQAVLFSPTFPPRVEILARK-------------------------------------- 284 (494)
Q Consensus 246 l~~gf~~~i~~Il~~l---~~~~Q~ilfSAT~~~~v~~l~~~-------------------------------------- 284 (494)
.+.++.+.++.++..+ +++.|+|++|||+++. ..++..
T Consensus 148 ~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~ 226 (674)
T PRK01172 148 GDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQWLNASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDIN 226 (674)
T ss_pred cCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHHhCCCccCCCCCCCCeEEEEEecCeeeecccccccccHH
Confidence 9988888888876654 5678999999998642 111110
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 227 ~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~ 306 (674)
T PRK01172 227 SLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEM 306 (674)
T ss_pred HHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHH
Confidence
Q ss_pred --cCCccceeeccccccCCCCCCceEEEecCC---------CCCHhHHHhhhccCCCc-----ceEEEEeccc
Q 042373 285 --TNVCNLSIANSVRARGLDEKELELVINFDA---------PNDYEDYVHHCCQSWLK-----SCAFRFISEE 341 (494)
Q Consensus 285 --~g~~~ILVaTdv~~rGlDi~~v~~VInyd~---------P~s~~~yvhR~GRaGr~-----G~aitfv~~~ 341 (494)
.|.++|||||+++++|+|+|+.. ||++|. |-+..+|.||+|||||. |.++.|+...
T Consensus 307 f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 307 FRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 67899999999999999999965 454443 45788999999999995 4577776544
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-30 Score=260.93 Aligned_cols=259 Identities=27% Similarity=0.435 Sum_probs=216.5
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCC------C----
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPP------V---- 189 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~------~---- 189 (494)
++.|+++|.-++|-.+..++.+.-||.+|+++||.|+.|-|++..|.||||||-||.+|+++.+++..+ .
T Consensus 1 m~af~e~gv~pel~~a~~e~dw~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqiv~etlrd~~egk~gk~~ 80 (725)
T KOG0349|consen 1 MTAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETLRDLEEGKAGKGG 80 (725)
T ss_pred CcchHhhCcchHhhhhhhhhccccccccccccccEEecCCcEEEEeccCCCCccceehhhHHHHHHHHHhHhhcccCCCc
Confidence 357999999999999999999999999999999999999999999999999999999999998762100 0
Q ss_pred --------------------------------------------------------------------------------
Q 042373 190 -------------------------------------------------------------------------------- 189 (494)
Q Consensus 190 -------------------------------------------------------------------------------- 189 (494)
T Consensus 81 ~~~ga~~~w~mn~~Drg~alaI~~dGL~CqSre~KeWhGcRaT~Gl~gkGK~YyEvtitd~GLCRVGWsT~qasLdlGt~ 160 (725)
T KOG0349|consen 81 MADGAPREWKMNKQDRGLALAIDEDGLACQSREKKEWHGCRATAGLYGKGKYYYEVTITDKGLCRVGWSTLQASLDLGTG 160 (725)
T ss_pred ccCCCccccccCccccCceeeEcCCccccchhHHhhhhccccccccccCceEEEEEEeccCceeeechhhcccccccCcc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 042373 190 -------------------------------------------------------------------------------- 189 (494)
Q Consensus 190 -------------------------------------------------------------------------------- 189 (494)
T Consensus 161 ~~gFGfGGTGkKS~nkqFDdYGe~Ft~~DvIGCyLDld~~~v~fsKNG~~lg~AF~ip~~~kn~~lfPAvvlkNael~fN 240 (725)
T KOG0349|consen 161 LDGFGFGGTGKKSTNKQFDDYGEPFTLNDVIGCYLDLDSRTVWFSKNGEQLGAAFSIPVKYKNSNLFPAVVLKNAELSFN 240 (725)
T ss_pred ccccccCccCccccccccccccCcccccceeeEEEeccCceEEEecCccccceeEEcChhhcccccchheeeccceEEEe
Confidence
Q ss_pred ----------------------------------------CCCCCCCeEEEEccchhHHHhh------------------
Q 042373 190 ----------------------------------------VPGDDSPVGLVMAPTGELVRQQ------------------ 211 (494)
Q Consensus 190 ----------------------------------------~~~~~~p~aLIl~PTreLa~Qi------------------ 211 (494)
.+..+.|.+||+-|+|||++|.
T Consensus 241 FG~~~FKfpPgngFva~s~Ap~e~~~~n~~~g~~a~~~~~k~~pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~ 320 (725)
T KOG0349|consen 241 FGSQPFKFPPGNGFVAVSDAPNEHSKANVNWGSYAEAPSAKPAPNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRS 320 (725)
T ss_pred cCCCccccCCCCceEEeecCCccccccCccccccccCcccccCCCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhh
Confidence 0001245899999999999987
Q ss_pred ------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcC----
Q 042373 212 ------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP---- 263 (494)
Q Consensus 212 ------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~---- 263 (494)
+||+|+.+.++.+ .+.|+.++|+|+||||.++..|+-+.|.++..++|.
T Consensus 321 lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g---~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsd 397 (725)
T KOG0349|consen 321 LLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKG---LVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSD 397 (725)
T ss_pred hhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcc---ceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcC
Confidence 7999999999875 468999999999999999999999999999998864
Q ss_pred --CCcEEEecCCCCh-HHHHHHHh--------------------------------------------------------
Q 042373 264 --DRQAVLFSPTFPP-RVEILARK-------------------------------------------------------- 284 (494)
Q Consensus 264 --~~Q~ilfSAT~~~-~v~~l~~~-------------------------------------------------------- 284 (494)
..|.+++|||+.. ++..+..+
T Consensus 398 g~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg 477 (725)
T KOG0349|consen 398 GFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPG 477 (725)
T ss_pred CcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccc
Confidence 4699999999642 22222211
Q ss_pred ------------------------------------------------------------------------------cC
Q 042373 285 ------------------------------------------------------------------------------TN 286 (494)
Q Consensus 285 ------------------------------------------------------------------------------~g 286 (494)
.+
T Consensus 478 ~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~ 557 (725)
T KOG0349|consen 478 QVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF 557 (725)
T ss_pred cCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc
Confidence 67
Q ss_pred CccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCC---CcceEEEEeccc----------------------
Q 042373 287 VCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSW---LKSCAFRFISEE---------------------- 341 (494)
Q Consensus 287 ~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaG---r~G~aitfv~~~---------------------- 341 (494)
.++.||||||++|||||.++-++||..+|.+...|+||+||.| |-|.+|+++...
T Consensus 558 dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ekvwyh~c~srgr~c~nt~l~ 637 (725)
T KOG0349|consen 558 DVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLT 637 (725)
T ss_pred CeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchheeehhhhccCCcccCCccc
Confidence 7889999999999999999999999999999999999999955 579999998532
Q ss_pred ----------CHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhccccc
Q 042373 342 ----------NAIYATDLVKAFELSELVVRDDLKAVADSFIAKVNLGLGQ 381 (494)
Q Consensus 342 ----------~~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~~ 381 (494)
+...+.+++..|+...|.|.+.++-..+.|..|+..|...
T Consensus 638 e~~gc~iwyne~~llaeve~hln~ti~qv~~~~~vpv~~fdgkv~ygqk~ 687 (725)
T KOG0349|consen 638 EVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTMDVPVNDFDGKVVYGQKN 687 (725)
T ss_pred cccceEEEeCchhHHHHHHHhhcceeeeeCCCCCCcccccCCeEEecccc
Confidence 2336788888999999999888888888888887766444
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=291.85 Aligned_cols=174 Identities=22% Similarity=0.287 Sum_probs=147.0
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
.|+ .||++|..++|.++.|+|++++||||||||+ |++|++..+.. .++++|||+|||+|+.|+
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--------~g~~alIL~PTreLa~Qi~~~l~~l 146 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--------KGKKSYIIFPTRLLVEQVVEKLEKF 146 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 578 8999999999999999999999999999995 67777665532 178999999999999997
Q ss_pred --------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc------
Q 042373 212 --------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD------ 247 (494)
Q Consensus 212 --------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~------ 247 (494)
+||++|.+++.. +...++++|||||||+|++
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~-----l~~~~~~~lVvDEaD~~L~~~k~id 221 (1176)
T PRK09401 147 GEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE-----LPKKKFDFVFVDDVDAVLKSSKNID 221 (1176)
T ss_pred hhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh-----ccccccCEEEEEChHHhhhcccchh
Confidence 578888777652 3556799999999999996
Q ss_pred -----cCCh-hHHHHHHHhhcC------------------------CCcEEEecCCCChH-HHH-HHHh-----------
Q 042373 248 -----MGFE-PQITRIVQNIRP------------------------DRQAVLFSPTFPPR-VEI-LARK----------- 284 (494)
Q Consensus 248 -----~gf~-~~i~~Il~~l~~------------------------~~Q~ilfSAT~~~~-v~~-l~~~----------- 284 (494)
+||. +++..++..++. .+|+++||||+++. +.. +.+.
T Consensus 222 ~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~ 301 (1176)
T PRK09401 222 KLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVF 301 (1176)
T ss_pred hHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCccc
Confidence 7895 688888887764 78999999999864 322 1111
Q ss_pred ------------------------------------------------------------------------cCCcccee
Q 042373 285 ------------------------------------------------------------------------TNVCNLSI 292 (494)
Q Consensus 285 ------------------------------------------------------------------------~g~~~ILV 292 (494)
+|+++|||
T Consensus 302 ~~rnI~~~yi~~~~k~~~L~~ll~~l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l~~~l~~F~~G~~~VLV 381 (1176)
T PRK09401 302 YLRNIVDSYIVDEDSVEKLVELVKRLGDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGFERKFEKFEEGEVDVLV 381 (1176)
T ss_pred ccCCceEEEEEcccHHHHHHHHHHhcCCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcHHHHHHHHHCCCCCEEE
Confidence 78999999
Q ss_pred e----ccccccCCCCCC-ceEEEecCCCC------CHhHHHhhhcc
Q 042373 293 A----NSVRARGLDEKE-LELVINFDAPN------DYEDYVHHCCQ 327 (494)
Q Consensus 293 a----Tdv~~rGlDi~~-v~~VInyd~P~------s~~~yvhR~GR 327 (494)
| ||+++||||+|+ |++|||||+|. ..+.|.||+||
T Consensus 382 atas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r 427 (1176)
T PRK09401 382 GVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLR 427 (1176)
T ss_pred EecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHH
Confidence 9 699999999999 89999999998 67889999999
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=280.43 Aligned_cols=200 Identities=16% Similarity=0.214 Sum_probs=156.3
Q ss_pred CCCHHHHHHHHh-CCCCCCChhHHHHHHHHHcC------CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 127 GLTTKILETFSK-LNHENPVAIQAPASALIISG------LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 127 ~L~~~ll~~l~~-~g~~~ptpiQ~~aip~il~g------rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
..+..+...+.+ ++| +|||+|.+||+.++.+ +|++++|+||||||.+|++|++..+.. +++++
T Consensus 435 ~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---------g~qvl 504 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---------GKQVA 504 (926)
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---------CCeEE
Confidence 345566666644 788 5999999999999985 799999999999999999999988854 67899
Q ss_pred EEccchhHHHhhh--------------------hh----hHHHHHHHhcCc-----------ceecccceEEEEEcccch
Q 042373 200 VMAPTGELVRQQV--------------------RR----GRMIDLLCKNGV-----------KITNLTRVTYLVLDEADR 244 (494)
Q Consensus 200 Il~PTreLa~Qi~--------------------TP----grl~dll~~~~~-----------~~~~l~~l~~lVlDEaD~ 244 (494)
||+||++||.|+. ++ .+++.-+..+.. +.+.++++.+||+||+|+
T Consensus 505 vLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVIDEahr 584 (926)
T TIGR00580 505 VLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIIDEEQR 584 (926)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEeecccc
Confidence 9999999999981 01 011111111110 124578999999999998
Q ss_pred hcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh----------------------------------------
Q 042373 245 MFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK---------------------------------------- 284 (494)
Q Consensus 245 ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~---------------------------------------- 284 (494)
+ .......+..++.++|+++||||+.+....++..
T Consensus 585 f-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~~~i~~~i~~el~~ 659 (926)
T TIGR00580 585 F-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDPELVREAIRRELLR 659 (926)
T ss_pred c-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCHHHHHHHHHHHHHc
Confidence 4 2344556677788899999999977665444322
Q ss_pred --------------------------------------------------cCCccceeeccccccCCCCCCceEEEecCC
Q 042373 285 --------------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDA 314 (494)
Q Consensus 285 --------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~ 314 (494)
.|+++|||||++++||||||++++||+++.
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a 739 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERA 739 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecC
Confidence 799999999999999999999999999999
Q ss_pred CC-CHhHHHhhhccCCC---cceEEEEeccc
Q 042373 315 PN-DYEDYVHHCCQSWL---KSCAFRFISEE 341 (494)
Q Consensus 315 P~-s~~~yvhR~GRaGr---~G~aitfv~~~ 341 (494)
|. ...+|+||+||+|| .|.||+|+.+.
T Consensus 740 ~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 740 DKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 86 67899999999555 78899998764
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=270.56 Aligned_cols=196 Identities=16% Similarity=0.209 Sum_probs=146.6
Q ss_pred HHHHHHH-HhCCCCCCChhHHHHHHHHHcC------CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc
Q 042373 130 TKILETF-SKLNHENPVAIQAPASALIISG------LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202 (494)
Q Consensus 130 ~~ll~~l-~~~g~~~ptpiQ~~aip~il~g------rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~ 202 (494)
..+.+.+ ..++| +||++|.+||+.|+.+ .|++++|+||||||++|++|++..+.. |.+++||+
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---------g~q~lila 317 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---------GYQAALMA 317 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEEe
Confidence 3444544 56888 6999999999999987 489999999999999999999988743 77999999
Q ss_pred cchhHHHhhh--------------------hh----hHHHHHHHhcCc-----------ceecccceEEEEEcccchhcc
Q 042373 203 PTGELVRQQV--------------------RR----GRMIDLLCKNGV-----------KITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 203 PTreLa~Qi~--------------------TP----grl~dll~~~~~-----------~~~~l~~l~~lVlDEaD~ml~ 247 (494)
||++||.|++ ++ ...+..+..+.. ..+.+.++.+||+||+|++..
T Consensus 318 PT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrfg~ 397 (681)
T PRK10917 318 PTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFGV 397 (681)
T ss_pred ccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhhhH
Confidence 9999999981 00 011111111100 113478999999999998631
Q ss_pred cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-------------------------------------------
Q 042373 248 MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------------------- 284 (494)
Q Consensus 248 ~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------------- 284 (494)
.....+......+++++||||..+....+...
T Consensus 398 -----~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~~~g~ 472 (681)
T PRK10917 398 -----EQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEIAKGR 472 (681)
T ss_pred -----HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHHHcCC
Confidence 22333444455689999999965543322211
Q ss_pred --------------------------------------------------------cCCccceeeccccccCCCCCCceE
Q 042373 285 --------------------------------------------------------TNVCNLSIANSVRARGLDEKELEL 308 (494)
Q Consensus 285 --------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~ 308 (494)
.|+.+|||||+++++|+|+|++++
T Consensus 473 q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~ 552 (681)
T PRK10917 473 QAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATV 552 (681)
T ss_pred cEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcE
Confidence 789999999999999999999999
Q ss_pred EEecCCCCC-HhHHHhhhccCCC---cceEEEEecc
Q 042373 309 VINFDAPND-YEDYVHHCCQSWL---KSCAFRFISE 340 (494)
Q Consensus 309 VInyd~P~s-~~~yvhR~GRaGr---~G~aitfv~~ 340 (494)
||+|+.|.. ...|.||+||+|| .|.||+|+..
T Consensus 553 VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 553 MVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred EEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECC
Confidence 999999984 6677777777555 7889999963
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=274.15 Aligned_cols=185 Identities=18% Similarity=0.157 Sum_probs=140.8
Q ss_pred CCCCCCChhHHHHHHHHHcCC-CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE-EccchhHHHhh-----
Q 042373 139 LNHENPVAIQAPASALIISGL-DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV-MAPTGELVRQQ----- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~gr-dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI-l~PTreLa~Qi----- 211 (494)
.||+ |||||.++||.++.|+ ++++.+|||||||.+|.++++.. . .+...|+.|| ++|||||+.|+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~------~~~~~~~rLv~~vPtReLa~Qi~~~~~ 83 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-E------IGAKVPRRLVYVVNRRTVVDQVTEEAE 83 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-c------ccccccceEEEeCchHHHHHHHHHHHH
Confidence 6898 9999999999999998 57778999999999776555522 1 1122677777 55999999998
Q ss_pred ---------------------------------------------------------hhhhHHHHHHHhcCcc-------
Q 042373 212 ---------------------------------------------------------VRRGRMIDLLCKNGVK------- 227 (494)
Q Consensus 212 ---------------------------------------------------------~TPgrl~dll~~~~~~------- 227 (494)
+| .|++.++...
T Consensus 84 ~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT----~D~i~sr~L~~gYg~~~ 159 (844)
T TIGR02621 84 KIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGT----VDMIGSRLLFSGYGCGF 159 (844)
T ss_pred HHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEEC----HHHHcCCcccccccccc
Confidence 22 2444432210
Q ss_pred ------eecccceEEEEEcccchhcccCChhHHHHHHHhh--cCC---CcEEEecCCCChHHHHHHHh------------
Q 042373 228 ------ITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI--RPD---RQAVLFSPTFPPRVEILARK------------ 284 (494)
Q Consensus 228 ------~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l--~~~---~Q~ilfSAT~~~~v~~l~~~------------ 284 (494)
...|+++++||||||| ++++|.+.+..|+..+ ++. +|+++||||++.++..++..
T Consensus 160 ~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~ 237 (844)
T TIGR02621 160 KSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK 237 (844)
T ss_pred ccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc
Confidence 0126889999999999 7899999999999975 332 69999999998765544322
Q ss_pred ------------------------------------------------------------------------c-------
Q 042373 285 ------------------------------------------------------------------------T------- 285 (494)
Q Consensus 285 ------------------------------------------------------------------------~------- 285 (494)
.
T Consensus 238 ~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~~lLHG~m~q~dR~~~~~~~i 317 (844)
T TIGR02621 238 KRLAAKKIVKLVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKFELLTGTLRGAERDDLVKKEI 317 (844)
T ss_pred ccccccceEEEEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCCeEeeCCCCHHHHhhHHHHHH
Confidence 1
Q ss_pred ----------CC-------ccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcce----EEEEecc
Q 042373 286 ----------NV-------CNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKSC----AFRFISE 340 (494)
Q Consensus 286 ----------g~-------~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G~----aitfv~~ 340 (494)
+. ..|||||++++|||||+. ++|||+..| .+.|+||+||.||.|. .++++..
T Consensus 318 l~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 318 FNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 22 579999999999999986 899998877 6899999999766443 4777754
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=281.98 Aligned_cols=194 Identities=16% Similarity=0.185 Sum_probs=148.0
Q ss_pred HHHHHHhCCCCCCChhHHHHHHHHHcC------CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch
Q 042373 132 ILETFSKLNHENPVAIQAPASALIISG------LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG 205 (494)
Q Consensus 132 ll~~l~~~g~~~ptpiQ~~aip~il~g------rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr 205 (494)
..+....++| .||++|.+||+.++.+ +|++++|+||||||.+|+.+++..+.. +.+++||+||+
T Consensus 590 ~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---------g~qvlvLvPT~ 659 (1147)
T PRK10689 590 YQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---------HKQVAVLVPTT 659 (1147)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---------CCeEEEEeCcH
Confidence 3444567888 7999999999999987 899999999999999999988876632 77999999999
Q ss_pred hHHHhhhh---------------------hh---HHHHHHHhcCc-----------ceecccceEEEEEcccchhcccCC
Q 042373 206 ELVRQQVR---------------------RG---RMIDLLCKNGV-----------KITNLTRVTYLVLDEADRMFDMGF 250 (494)
Q Consensus 206 eLa~Qi~T---------------------Pg---rl~dll~~~~~-----------~~~~l~~l~~lVlDEaD~ml~~gf 250 (494)
+||.|+.. .. ..+..+..+.. ..+.++++.+||+||+|++ |+
T Consensus 660 eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahrf---G~ 736 (1147)
T PRK10689 660 LLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRF---GV 736 (1147)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEechhhc---ch
Confidence 99999810 00 00111111110 1134789999999999996 44
Q ss_pred hhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh----------------------------------------------
Q 042373 251 EPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK---------------------------------------------- 284 (494)
Q Consensus 251 ~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~---------------------------------------------- 284 (494)
. ...++..++.++|+++||||+++.+..++..
T Consensus 737 ~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~~il~el~r~gqv~v 814 (1147)
T PRK10689 737 R--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYY 814 (1147)
T ss_pred h--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHHHHHHHHhcCCeEEE
Confidence 3 2455677888999999999988776665543
Q ss_pred --------------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCC-CHh
Q 042373 285 --------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPN-DYE 319 (494)
Q Consensus 285 --------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~-s~~ 319 (494)
.|+++|||||++++||||+|+|++||.++..+ +..
T Consensus 815 f~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fgla 894 (1147)
T PRK10689 815 LYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 (1147)
T ss_pred EECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHH
Confidence 79999999999999999999999999433321 345
Q ss_pred HHHhhhccCCC---cceEEEEecc
Q 042373 320 DYVHHCCQSWL---KSCAFRFISE 340 (494)
Q Consensus 320 ~yvhR~GRaGr---~G~aitfv~~ 340 (494)
+|+||+||+|| .|.||+++..
T Consensus 895 q~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 895 QLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred HHHHHhhccCCCCCceEEEEEeCC
Confidence 79999999665 6788987754
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-28 Score=266.21 Aligned_cols=196 Identities=19% Similarity=0.215 Sum_probs=145.0
Q ss_pred HHHHHHHHhCCCCCCChhHHHHHHHHHcC------CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc
Q 042373 130 TKILETFSKLNHENPVAIQAPASALIISG------LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP 203 (494)
Q Consensus 130 ~~ll~~l~~~g~~~ptpiQ~~aip~il~g------rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P 203 (494)
..+...+..++| +||++|.+||+.|+.+ .+.+++|+||||||++|++|++..+.. +.+++||+|
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---------g~qvlilaP 292 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---------GYQVALMAP 292 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---------CCcEEEECC
Confidence 344556678999 7999999999999987 268999999999999999999988753 678999999
Q ss_pred chhHHHhhhh---------------------hhH---HHHHHHhcCc-----------ceecccceEEEEEcccchhccc
Q 042373 204 TGELVRQQVR---------------------RGR---MIDLLCKNGV-----------KITNLTRVTYLVLDEADRMFDM 248 (494)
Q Consensus 204 TreLa~Qi~T---------------------Pgr---l~dll~~~~~-----------~~~~l~~l~~lVlDEaD~ml~~ 248 (494)
|++||.|+.. ... .+..+..+.. ....+.++.+||+||+|++..
T Consensus 293 T~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDEaH~fg~- 371 (630)
T TIGR00643 293 TEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIIDEQHRFGV- 371 (630)
T ss_pred HHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEechhhccH-
Confidence 9999999810 000 1111111100 113578999999999998532
Q ss_pred CChhHHHHHHHhhc--CCCcEEEecCCCChHHHHHHHh------------------------------------------
Q 042373 249 GFEPQITRIVQNIR--PDRQAVLFSPTFPPRVEILARK------------------------------------------ 284 (494)
Q Consensus 249 gf~~~i~~Il~~l~--~~~Q~ilfSAT~~~~v~~l~~~------------------------------------------ 284 (494)
.+...+..... ..+|+++||||..+....+...
T Consensus 372 ---~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~l~~g 448 (630)
T TIGR00643 372 ---EQRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDEKDIVYEFIEEEIAKG 448 (630)
T ss_pred ---HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcchHHHHHHHHHHHHHhC
Confidence 12222333322 2688999999964433222110
Q ss_pred ---------------------------------------------------------cCCccceeeccccccCCCCCCce
Q 042373 285 ---------------------------------------------------------TNVCNLSIANSVRARGLDEKELE 307 (494)
Q Consensus 285 ---------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~ 307 (494)
.|+.+|||||+++++|+|+|+++
T Consensus 449 ~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~ 528 (630)
T TIGR00643 449 RQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNAT 528 (630)
T ss_pred CcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCc
Confidence 78999999999999999999999
Q ss_pred EEEecCCCC-CHhHHHhhhccCCC---cceEEEEec
Q 042373 308 LVINFDAPN-DYEDYVHHCCQSWL---KSCAFRFIS 339 (494)
Q Consensus 308 ~VInyd~P~-s~~~yvhR~GRaGr---~G~aitfv~ 339 (494)
+||+|+.|. ....|.||+||+|| .|.|++++.
T Consensus 529 ~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 529 VMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred EEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 999999997 56777778888665 788999983
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-28 Score=258.16 Aligned_cols=204 Identities=21% Similarity=0.360 Sum_probs=167.3
Q ss_pred HHHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-
Q 042373 134 ETFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ- 211 (494)
Q Consensus 134 ~~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi- 211 (494)
..|+. +||..+.|-|.++|..+++|+|++++.|||+||++||.+|.+-. ...+|||+|...|...+
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------------~G~TLVVSPLiSLM~DQV 74 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------------EGLTLVVSPLISLMKDQV 74 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------------CCCEEEECchHHHHHHHH
Confidence 44544 89999999999999999999999999999999999999999843 22799999999999765
Q ss_pred --------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccC--Ch
Q 042373 212 --------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG--FE 251 (494)
Q Consensus 212 --------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~g--f~ 251 (494)
.+|+||..--.. +.+.-.++.++||||||++.+|| |+
T Consensus 75 ~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~---~~L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 75 DQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL---ELLKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred HHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH---HHHHhCCCceEEechHHHHhhcCCccC
Confidence 234333211000 01123468899999999999998 99
Q ss_pred hHHHHHHHhhc--CCCcEEEecCCCChHHHHHHHh---------------------------------------------
Q 042373 252 PQITRIVQNIR--PDRQAVLFSPTFPPRVEILARK--------------------------------------------- 284 (494)
Q Consensus 252 ~~i~~Il~~l~--~~~Q~ilfSAT~~~~v~~l~~~--------------------------------------------- 284 (494)
+.+.++-.... ++..++.|+||.++.+..-+..
T Consensus 152 P~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~ 231 (590)
T COG0514 152 PDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLATVLPQLSK 231 (590)
T ss_pred HhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHhhccccCC
Confidence 98888755442 3789999999998887655443
Q ss_pred ----------------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCH
Q 042373 285 ----------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDY 318 (494)
Q Consensus 285 ----------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~ 318 (494)
.+..+|+|||..+.+|||-|||++|||||+|.|+
T Consensus 232 ~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~ 311 (590)
T COG0514 232 SGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSI 311 (590)
T ss_pred CeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCH
Confidence 7899999999999999999999999999999999
Q ss_pred hHHHhhhccCCCcce---EEEEecccCHHHHHHHHHH
Q 042373 319 EDYVHHCCQSWLKSC---AFRFISEENAIYATDLVKA 352 (494)
Q Consensus 319 ~~yvhR~GRaGr~G~---aitfv~~~~~~~~~~i~~~ 352 (494)
+.|+|-+|||||.|. |++|+.+.|....+.+.+.
T Consensus 312 EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 312 ESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred HHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 999999999988775 9999999998777666554
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=265.81 Aligned_cols=209 Identities=22% Similarity=0.260 Sum_probs=173.0
Q ss_pred CCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH
Q 042373 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL 207 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL 207 (494)
|++.+.+.++.. |.+|||.|.+|||.|++|+|++++||||||||+|.+||++..+....+ .....+-.+|||+|.|+|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~-~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGK-GKLEDGIYALYISPLKAL 85 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccC-CCCCCceEEEEeCcHHHH
Confidence 789999999888 999999999999999999999999999999999999999999988741 122236789999999999
Q ss_pred HHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhccc
Q 042373 208 VRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDM 248 (494)
Q Consensus 208 a~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~ 248 (494)
...+ +||+.|.-+|..... .-.|+++++||+||.|.+.+.
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~-r~~l~~vr~VIVDEiHel~~s 164 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKF-RELLRDVRYVIVDEIHALAES 164 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHH-HHHhcCCcEEEeehhhhhhcc
Confidence 9998 799999777765433 346899999999999999976
Q ss_pred CChhHHHHHHHhhc---CCCcEEEecCCCChHHHHHHHh-----------------------------------------
Q 042373 249 GFEPQITRIVQNIR---PDRQAVLFSPTFPPRVEILARK----------------------------------------- 284 (494)
Q Consensus 249 gf~~~i~~Il~~l~---~~~Q~ilfSAT~~~~v~~l~~~----------------------------------------- 284 (494)
.-..++.--++++. .+.|.|++|||..+. ...++.
T Consensus 165 KRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 165 KRGVQLALSLERLRELAGDFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred ccchhhhhhHHHHHhhCcccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHH
Confidence 65555544444432 388999999998743 233322
Q ss_pred ----------------------------------------------------------cCCccceeeccccccCCCCCCc
Q 042373 285 ----------------------------------------------------------TNVCNLSIANSVRARGLDEKEL 306 (494)
Q Consensus 285 ----------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v 306 (494)
.|..+.+|||+.+.-||||.+|
T Consensus 244 ~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~v 323 (814)
T COG1201 244 ERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDI 323 (814)
T ss_pred HHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCc
Confidence 8999999999999999999999
Q ss_pred eEEEecCCCCCHhHHHhhhccCCC----cceEEEEecc
Q 042373 307 ELVINFDAPNDYEDYVHHCCQSWL----KSCAFRFISE 340 (494)
Q Consensus 307 ~~VInyd~P~s~~~yvhR~GRaGr----~G~aitfv~~ 340 (494)
++||+|.-|.++..++||+||+|+ ...++.+...
T Consensus 324 dlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 324 DLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred eEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999876 2345555444
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-28 Score=269.17 Aligned_cols=193 Identities=15% Similarity=0.119 Sum_probs=144.0
Q ss_pred hhHHHHHHHHHcCCCEEEEcCCCCCchhh---------hHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhh-h
Q 042373 146 AIQAPASALIISGLDSVAITETGSGKTLA---------FLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRR-G 215 (494)
Q Consensus 146 piQ~~aip~il~grdvi~~a~TGSGKTla---------fllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TP-g 215 (494)
.+|.++++.++.|+|+|++|+||||||.+ |++|.+..+..-. ....+++++|++||||||.|+... +
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~---~~~~~~~ilvt~PrreLa~qi~~~i~ 243 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID---PNFIERPIVLSLPRVALVRLHSITLL 243 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc---cccCCcEEEEECcHHHHHHHHHHHHH
Confidence 48999999999999999999999999997 5666666553211 111256899999999999997211 0
Q ss_pred H----------------------HH-------HHH-HhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhc-CC
Q 042373 216 R----------------------MI-------DLL-CKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIR-PD 264 (494)
Q Consensus 216 r----------------------l~-------dll-~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~-~~ 264 (494)
. +. +++ .........|+++++|||||||++..++ +.+..++..+. ..
T Consensus 244 ~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~~--DllL~llk~~~~~~ 321 (675)
T PHA02653 244 KSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQIG--DIIIAVARKHIDKI 321 (675)
T ss_pred HHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccccccccCCEEEccccccCccch--hHHHHHHHHhhhhc
Confidence 0 00 011 1011111247789999999999998876 45666665543 44
Q ss_pred CcEEEecCCCChHHHHHHHh------------------------------------------------------------
Q 042373 265 RQAVLFSPTFPPRVEILARK------------------------------------------------------------ 284 (494)
Q Consensus 265 ~Q~ilfSAT~~~~v~~l~~~------------------------------------------------------------ 284 (494)
+|+++||||++.++..+.+.
T Consensus 322 rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVF 401 (675)
T PHA02653 322 RSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVF 401 (675)
T ss_pred CEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEE
Confidence 69999999997543322110
Q ss_pred ------------------------------------------cCCccceeeccccccCCCCCCceEEEecC---CCC---
Q 042373 285 ------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFD---APN--- 316 (494)
Q Consensus 285 ------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd---~P~--- 316 (494)
.|+.+||||||+++|||||++|++|||++ .|.
T Consensus 402 lpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~ 481 (675)
T PHA02653 402 VASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFG 481 (675)
T ss_pred ECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCccc
Confidence 47789999999999999999999999999 676
Q ss_pred ------CHhHHHhhhccCCC--cceEEEEecccCH
Q 042373 317 ------DYEDYVHHCCQSWL--KSCAFRFISEENA 343 (494)
Q Consensus 317 ------s~~~yvhR~GRaGr--~G~aitfv~~~~~ 343 (494)
|..+|+||+||+|| .|.|+.|+++.+.
T Consensus 482 g~~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~ 516 (675)
T PHA02653 482 GKEMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLL 516 (675)
T ss_pred CcccccCHHHHHHhccCcCCCCCCeEEEEECHHHh
Confidence 88899999999887 8999999998764
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=280.78 Aligned_cols=188 Identities=19% Similarity=0.200 Sum_probs=147.2
Q ss_pred HHHHHHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHH
Q 042373 131 KILETFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVR 209 (494)
Q Consensus 131 ~ll~~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~ 209 (494)
.+.+.+++ +|| +||++|+++||.+++|+|++++||||||||++++++.+.... .++++|||+|||+|+.
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---------~g~~aLVl~PTreLa~ 136 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---------KGKKCYIILPTTLLVK 136 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---------cCCeEEEEECHHHHHH
Confidence 34455655 899 699999999999999999999999999999966666554321 1678999999999999
Q ss_pred hh---------------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccch
Q 042373 210 QQ---------------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADR 244 (494)
Q Consensus 210 Qi---------------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ 244 (494)
|+ +||++|.+.+... . ..+++++||||||+
T Consensus 137 Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~-~~~i~~iVVDEAD~ 211 (1638)
T PRK14701 137 QTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----K-HLKFDFIFVDDVDA 211 (1638)
T ss_pred HHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----h-hCCCCEEEEECcee
Confidence 98 5677776655431 1 26789999999999
Q ss_pred hcc-----------cCChhHHHH----HHH----------------------hhcCCCc-EEEecCCCChH--HHHHHHh
Q 042373 245 MFD-----------MGFEPQITR----IVQ----------------------NIRPDRQ-AVLFSPTFPPR--VEILARK 284 (494)
Q Consensus 245 ml~-----------~gf~~~i~~----Il~----------------------~l~~~~Q-~ilfSAT~~~~--v~~l~~~ 284 (494)
|++ +||.+++.. |+. .++..+| +++||||+++. +..+.+.
T Consensus 212 ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~ 291 (1638)
T PRK14701 212 FLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRE 291 (1638)
T ss_pred ccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhc
Confidence 987 589888864 432 2344566 57799999852 2222221
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 292 ~l~f~v~~~~~~lr~i~~~yi~~~~~~k~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~R~~~l 371 (1638)
T PRK14701 292 LLGFEVGSGRSALRNIVDVYLNPEKIIKEHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAKNKKGF 371 (1638)
T ss_pred CeEEEecCCCCCCCCcEEEEEECCHHHHHHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecchHHHHH
Confidence
Q ss_pred ----cCCccceeec----cccccCCCCCC-ceEEEecCCCC---CHhHHHhhh-------------ccCCCcce
Q 042373 285 ----TNVCNLSIAN----SVRARGLDEKE-LELVINFDAPN---DYEDYVHHC-------------CQSWLKSC 333 (494)
Q Consensus 285 ----~g~~~ILVaT----dv~~rGlDi~~-v~~VInyd~P~---s~~~yvhR~-------------GRaGr~G~ 333 (494)
.|+++||||| ++++||||+|+ |++|||||+|. +++.|.|.. ||+|+.|.
T Consensus 372 ~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~ 445 (1638)
T PRK14701 372 DLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGI 445 (1638)
T ss_pred HHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCC
Confidence 8999999999 59999999999 99999999999 888777765 77777765
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-27 Score=264.49 Aligned_cols=182 Identities=17% Similarity=0.195 Sum_probs=149.2
Q ss_pred HHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------------------
Q 042373 150 PASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------------ 211 (494)
Q Consensus 150 ~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------------ 211 (494)
+.+..+.+++++|++|+||||||.+|.+++++.... +.++||+.|||++|.|+
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~---------~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI---------GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc---------CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 455566678999999999999999999999987621 45899999999999998
Q ss_pred ----------------hhhhHHHHHHHhcCcceecccceEEEEEcccc-hhcccCChh-HHHHHHHhhcCCCcEEEecCC
Q 042373 212 ----------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEAD-RMFDMGFEP-QITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 212 ----------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD-~ml~~gf~~-~i~~Il~~l~~~~Q~ilfSAT 273 (494)
+|||+|.+++... ..|+++++|||||+| ++++.+|.- .+..+...++++.|+|+||||
T Consensus 80 ~vr~~~~~s~~t~I~v~T~G~Llr~l~~d----~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSAT 155 (819)
T TIGR01970 80 RVRGENKVSRRTRLEVVTEGILTRMIQDD----PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSAT 155 (819)
T ss_pred EEccccccCCCCcEEEECCcHHHHHHhhC----cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCC
Confidence 7999999988753 368999999999999 588776643 334566667889999999999
Q ss_pred CChHHH-HHHHh--------------------------------------------------------------------
Q 042373 274 FPPRVE-ILARK-------------------------------------------------------------------- 284 (494)
Q Consensus 274 ~~~~v~-~l~~~-------------------------------------------------------------------- 284 (494)
++.... .+...
T Consensus 156 l~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~ 235 (819)
T TIGR01970 156 LDGERLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDS 235 (819)
T ss_pred CCHHHHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCC
Confidence 875421 11100
Q ss_pred ------------------------cCCccceeeccccccCCCCCCceEEEecCCCCC------------------HhHHH
Q 042373 285 ------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPND------------------YEDYV 322 (494)
Q Consensus 285 ------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s------------------~~~yv 322 (494)
.|..+||||||++++||||++|++|||+++|.. ..+|+
T Consensus 236 ~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~ 315 (819)
T TIGR01970 236 DVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASAT 315 (819)
T ss_pred CcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHH
Confidence 678899999999999999999999999999853 34689
Q ss_pred hhhccCCC--cceEEEEecccCHH
Q 042373 323 HHCCQSWL--KSCAFRFISEENAI 344 (494)
Q Consensus 323 hR~GRaGr--~G~aitfv~~~~~~ 344 (494)
||+||+|| .|.||.|+++.+..
T Consensus 316 QR~GRAGR~~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 316 QRAGRAGRLEPGVCYRLWSEEQHQ 339 (819)
T ss_pred hhhhhcCCCCCCEEEEeCCHHHHH
Confidence 99999997 89999999986543
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-27 Score=263.70 Aligned_cols=181 Identities=16% Similarity=0.220 Sum_probs=146.4
Q ss_pred HHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------------------
Q 042373 150 PASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------------ 211 (494)
Q Consensus 150 ~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------------ 211 (494)
+.+..+.+++++|++|+||||||.+|.+|+++.... +.++||+.|||++|.|+
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---------CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 445566688999999999999999999999975321 34899999999999998
Q ss_pred ----------------hhhhHHHHHHHhcCcceecccceEEEEEcccch-hcccCC-hhHHHHHHHhhcCCCcEEEecCC
Q 042373 212 ----------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADR-MFDMGF-EPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 212 ----------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~-ml~~gf-~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
+|||+|.+++... ..|+++++|||||+|. .++..+ ...+..+++.++++.|+++||||
T Consensus 83 ~vr~~~~~~~~t~I~v~T~G~Llr~l~~d----~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSAT 158 (812)
T PRK11664 83 RMRAESKVGPNTRLEVVTEGILTRMIQRD----PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSAT 158 (812)
T ss_pred EecCccccCCCCcEEEEChhHHHHHHhhC----CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecC
Confidence 7999999988753 3689999999999996 555443 23345566778889999999999
Q ss_pred CChHH-HHHHHh--------------------------------------------------------------------
Q 042373 274 FPPRV-EILARK-------------------------------------------------------------------- 284 (494)
Q Consensus 274 ~~~~v-~~l~~~-------------------------------------------------------------------- 284 (494)
++... ..+...
T Consensus 159 l~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~ 238 (812)
T PRK11664 159 LDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVAS 238 (812)
T ss_pred CCHHHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccC
Confidence 87542 111100
Q ss_pred ------------------------cCCccceeeccccccCCCCCCceEEEecCCCCC------------------HhHHH
Q 042373 285 ------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPND------------------YEDYV 322 (494)
Q Consensus 285 ------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s------------------~~~yv 322 (494)
.|+.+||||||++++||||++|++|||+++|.. ..+|+
T Consensus 239 ~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~ 318 (812)
T PRK11664 239 DVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMT 318 (812)
T ss_pred CceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhh
Confidence 678999999999999999999999999887753 35899
Q ss_pred hhhccCCC--cceEEEEecccCH
Q 042373 323 HHCCQSWL--KSCAFRFISEENA 343 (494)
Q Consensus 323 hR~GRaGr--~G~aitfv~~~~~ 343 (494)
||+||+|| .|.||.|+++.+.
T Consensus 319 QR~GRaGR~~~G~cyrL~t~~~~ 341 (812)
T PRK11664 319 QRAGRAGRLEPGICLHLYSKEQA 341 (812)
T ss_pred hhccccCCCCCcEEEEecCHHHH
Confidence 99999998 8999999997654
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-26 Score=267.16 Aligned_cols=171 Identities=23% Similarity=0.295 Sum_probs=133.0
Q ss_pred HHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 131 KILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 131 ~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
.+.+.+.+.....||++|+.++|.++.|+|++++||||||||+ |++|++..+... ++++|||+|||+||.|
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~--------g~~vLIL~PTreLa~Q 136 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK--------GKRCYIILPTTLLVIQ 136 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc--------CCeEEEEeCHHHHHHH
Confidence 3444555544447999999999999999999999999999996 778887766432 6899999999999999
Q ss_pred h----------------------------------------------hhhhHHHHHHHhcCcceeccc-ceEEEEEcccc
Q 042373 211 Q----------------------------------------------VRRGRMIDLLCKNGVKITNLT-RVTYLVLDEAD 243 (494)
Q Consensus 211 i----------------------------------------------~TPgrl~dll~~~~~~~~~l~-~l~~lVlDEaD 243 (494)
+ +||++|.+.+.. +. +++++||||||
T Consensus 137 i~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~-------l~~~~~~iVvDEaD 209 (1171)
T TIGR01054 137 VAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE-------LGPKFDFIFVDDVD 209 (1171)
T ss_pred HHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH-------hcCCCCEEEEeChH
Confidence 7 366666655543 22 78999999999
Q ss_pred hhcc-----------cCChhH-HHHHHH----------------------hhcCCCc--EEEecCC-CChHHHHHH-Hh-
Q 042373 244 RMFD-----------MGFEPQ-ITRIVQ----------------------NIRPDRQ--AVLFSPT-FPPRVEILA-RK- 284 (494)
Q Consensus 244 ~ml~-----------~gf~~~-i~~Il~----------------------~l~~~~Q--~ilfSAT-~~~~v~~l~-~~- 284 (494)
+|++ +||.++ +..|++ .++..+| +++|||| +|..+.... +.
T Consensus 210 ~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~l 289 (1171)
T TIGR01054 210 ALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFREL 289 (1171)
T ss_pred hhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccc
Confidence 9998 789874 666543 3445556 5679999 555433111 00
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 290 l~~~v~~~~~~~r~I~~~~~~~~~~~~~L~~ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~~~l~ 369 (1171)
T TIGR01054 290 LGFEVGGGSDTLRNVVDVYVEDEDLKETLLEIVKKLGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPKEDYE 369 (1171)
T ss_pred cceEecCccccccceEEEEEecccHHHHHHHHHHHcCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCHHHHH
Confidence
Q ss_pred ---cCCccceee----ccccccCCCCCC-ceEEEecCCCCC
Q 042373 285 ---TNVCNLSIA----NSVRARGLDEKE-LELVINFDAPND 317 (494)
Q Consensus 285 ---~g~~~ILVa----Tdv~~rGlDi~~-v~~VInyd~P~s 317 (494)
.|+++|||| ||+++||||+|+ |++|||||+|..
T Consensus 370 ~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 370 KFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred HHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 799999999 599999999999 899999999975
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=214.37 Aligned_cols=155 Identities=46% Similarity=0.733 Sum_probs=141.4
Q ss_pred cccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc
Q 042373 123 WRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202 (494)
Q Consensus 123 f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~ 202 (494)
|+++++++.+.+.|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++.++.... ...++++||++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~----~~~~~~viii~ 76 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP----KKDGPQALILA 76 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc----ccCCceEEEEc
Confidence 78899999999999999999999999999999999999999999999999999999999987652 12378999999
Q ss_pred cchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccc
Q 042373 203 PTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEAD 243 (494)
Q Consensus 203 PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD 243 (494)
||++|+.|+ +||+++.+++.... ..+.+++++|+||+|
T Consensus 77 p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~l~~lIvDE~h 153 (203)
T cd00268 77 PTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK---LDLSKVKYLVLDEAD 153 (203)
T ss_pred CCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---CChhhCCEEEEeChH
Confidence 999999996 68999988887643 578899999999999
Q ss_pred hhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 244 RMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 244 ~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
.+.+.+|...+..++..++..+|++++|||+++.+..++..
T Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~ 194 (203)
T cd00268 154 RMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARK 194 (203)
T ss_pred HhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHH
Confidence 99999999999999999999999999999999998887755
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-26 Score=236.31 Aligned_cols=171 Identities=20% Similarity=0.193 Sum_probs=125.0
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh---------------------------
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV--------------------------- 212 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~--------------------------- 212 (494)
|+++.||||||||++|++|++..+.... +.+++|++|+|+|+.|+.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~-------~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~ 73 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQK-------ADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMG 73 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCC-------CCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccC
Confidence 6899999999999999999998865322 568999999999999981
Q ss_pred ---------------------------hhhHHHHHHHhc-Ccceeccc--ceEEEEEcccchhcccCChhHHHHHHHhhc
Q 042373 213 ---------------------------RRGRMIDLLCKN-GVKITNLT--RVTYLVLDEADRMFDMGFEPQITRIVQNIR 262 (494)
Q Consensus 213 ---------------------------TPgrl~dll~~~-~~~~~~l~--~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~ 262 (494)
||+++...+..+ ......+. ..++||+||+|++.++++.. +..++..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~ 152 (358)
T TIGR01587 74 DSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK 152 (358)
T ss_pred CchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH
Confidence 222222222110 00000011 23789999999999876544 666666664
Q ss_pred -CCCcEEEecCCCChHHHHHHHh---------------------------------------------------------
Q 042373 263 -PDRQAVLFSPTFPPRVEILARK--------------------------------------------------------- 284 (494)
Q Consensus 263 -~~~Q~ilfSAT~~~~v~~l~~~--------------------------------------------------------- 284 (494)
.+.|+++||||+|..+..++..
T Consensus 153 ~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~ 232 (358)
T TIGR01587 153 DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTV 232 (358)
T ss_pred HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCH
Confidence 5789999999999777665543
Q ss_pred -------------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHH
Q 042373 285 -------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDY 321 (494)
Q Consensus 285 -------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~y 321 (494)
.+..+|||||++++||+||+ +++||+++.| .++|
T Consensus 233 ~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~ 309 (358)
T TIGR01587 233 DRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSL 309 (358)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHH
Confidence 46678999999999999995 8899999877 7899
Q ss_pred HhhhccCCCcc-------eEEEEeccc
Q 042373 322 VHHCCQSWLKS-------CAFRFISEE 341 (494)
Q Consensus 322 vhR~GRaGr~G-------~aitfv~~~ 341 (494)
+||+||+||.| ..+.|....
T Consensus 310 iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 310 IQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHhccccCCCCCCCCCCeEEEEeecC
Confidence 99999977743 456565543
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=263.01 Aligned_cols=178 Identities=18% Similarity=0.196 Sum_probs=136.2
Q ss_pred EEcCCCCCchhhhHHHHHHHHHcCCCCC----CCCCCCeEEEEccchhHHHhh---------------------------
Q 042373 163 AITETGSGKTLAFLLPMLRHIWEQPPVV----PGDDSPVGLVMAPTGELVRQQ--------------------------- 211 (494)
Q Consensus 163 ~~a~TGSGKTlafllpil~~l~~~~~~~----~~~~~p~aLIl~PTreLa~Qi--------------------------- 211 (494)
++||||||||+||+||+|..++.+.... ....+.++|||+|||+|+.|+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999998653110 112368999999999999875
Q ss_pred ------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChh----HHHHHHHhhcC
Q 042373 212 ------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEP----QITRIVQNIRP 263 (494)
Q Consensus 212 ------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~----~i~~Il~~l~~ 263 (494)
+||++|..+|.... ...|++|++|||||+|.|++..+.. .+++|...++.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~--r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~ 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRA--RETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHT 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhh--hhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCC
Confidence 79999988877532 2468999999999999999764444 45555555567
Q ss_pred CCcEEEecCCCChH--HHHH-----------------------------------------------------------H
Q 042373 264 DRQAVLFSPTFPPR--VEIL-----------------------------------------------------------A 282 (494)
Q Consensus 264 ~~Q~ilfSAT~~~~--v~~l-----------------------------------------------------------~ 282 (494)
+.|+|+||||+++. +..+ .
T Consensus 159 ~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il 238 (1490)
T PRK09751 159 SAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGIL 238 (1490)
T ss_pred CCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHH
Confidence 88999999997541 1000 0
Q ss_pred H---h---------------------------------------------------------------------------
Q 042373 283 R---K--------------------------------------------------------------------------- 284 (494)
Q Consensus 283 ~---~--------------------------------------------------------------------------- 284 (494)
. .
T Consensus 239 ~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~ 318 (1490)
T PRK09751 239 DEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAI 318 (1490)
T ss_pred HHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHH
Confidence 0 0
Q ss_pred ------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCc--ceEEEEecccC
Q 042373 285 ------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLK--SCAFRFISEEN 342 (494)
Q Consensus 285 ------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~--G~aitfv~~~~ 342 (494)
+|.+++||||+.+++||||++|++||||+.|.++.+|+||+||+||. |.+..++.+.+
T Consensus 319 IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~ 384 (1490)
T PRK09751 319 TEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRT 384 (1490)
T ss_pred HHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCc
Confidence 35678999999999999999999999999999999999999999984 44444444433
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=233.89 Aligned_cols=173 Identities=17% Similarity=0.105 Sum_probs=136.2
Q ss_pred CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---------
Q 042373 141 HENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--------- 211 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--------- 211 (494)
...|+++|.++++.++.+++.++++|||+|||+++... ...+.... ..++|||+||++|+.|+
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l-~~~~~~~~-------~~~vLilvpt~eL~~Q~~~~l~~~~~ 183 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLL-SRYYLENY-------EGKVLIIVPTTSLVTQMIDDFVDYRL 183 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH-HHHHHhcC-------CCeEEEEECcHHHHHHHHHHHHHhcc
Confidence 45899999999999999999999999999999976542 22222221 34899999999999998
Q ss_pred -----------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEE
Q 042373 212 -----------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAV 268 (494)
Q Consensus 212 -----------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~i 268 (494)
+||+++..... ..+.++.+||+||||++.. ..+..++..+++.+|++
T Consensus 184 ~~~~~~~~i~~g~~~~~~~~I~VaT~qsl~~~~~------~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~~~~l 253 (501)
T PHA02558 184 FPREAMHKIYSGTAKDTDAPIVVSTWQSAVKQPK------EWFDQFGMVIVDECHLFTG----KSLTSIITKLDNCKFKF 253 (501)
T ss_pred ccccceeEEecCcccCCCCCEEEeeHHHHhhchh------hhccccCEEEEEchhcccc----hhHHHHHHhhhccceEE
Confidence 45565543221 1367899999999999975 35677778887788999
Q ss_pred EecCCCChHHH-------------------HHHH-----------------------------------------h----
Q 042373 269 LFSPTFPPRVE-------------------ILAR-----------------------------------------K---- 284 (494)
Q Consensus 269 lfSAT~~~~v~-------------------~l~~-----------------------------------------~---- 284 (494)
+||||++.... .+.. +
T Consensus 254 GLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I 333 (501)
T PHA02558 254 GLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWI 333 (501)
T ss_pred EEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHH
Confidence 99999753210 0000 0
Q ss_pred ----------------------------------------------------------cCCccceeec-cccccCCCCCC
Q 042373 285 ----------------------------------------------------------TNVCNLSIAN-SVRARGLDEKE 305 (494)
Q Consensus 285 ----------------------------------------------------------~g~~~ILVaT-dv~~rGlDi~~ 305 (494)
.+...||||| +++++|+|+|+
T Consensus 334 ~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ 413 (501)
T PHA02558 334 ANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKN 413 (501)
T ss_pred HHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccccc
Confidence 4677899998 89999999999
Q ss_pred ceEEEecCCCCCHhHHHhhhccCCCc
Q 042373 306 LELVINFDAPNDYEDYVHHCCQSWLK 331 (494)
Q Consensus 306 v~~VInyd~P~s~~~yvhR~GRaGr~ 331 (494)
+++||++.++.+...|+||+||.+|.
T Consensus 414 ld~vIl~~p~~s~~~~~QriGR~~R~ 439 (501)
T PHA02558 414 LHHVIFAHPSKSKIIVLQSIGRVLRK 439 (501)
T ss_pred ccEEEEecCCcchhhhhhhhhccccC
Confidence 99999999999999999999997774
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-24 Score=214.93 Aligned_cols=205 Identities=22% Similarity=0.331 Sum_probs=164.6
Q ss_pred HHHHHHHh-CCCCC-CChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH
Q 042373 131 KILETFSK-LNHEN-PVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL 207 (494)
Q Consensus 131 ~ll~~l~~-~g~~~-ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL 207 (494)
.+.++|++ +||.+ -++.|.+|+..+..+ +||.++.|||+||+|||.||.|.+ +.+.||++|..+|
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------~gITIV~SPLiAL 73 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------GGITIVISPLIAL 73 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------------CCeEEEehHHHHH
Confidence 45567766 57654 489999999999877 699999999999999999999965 4599999999999
Q ss_pred HHhh-----------------------------------------hhhhH-----HHHHHHhcCcceecccceEEEEEcc
Q 042373 208 VRQQ-----------------------------------------VRRGR-----MIDLLCKNGVKITNLTRVTYLVLDE 241 (494)
Q Consensus 208 a~Qi-----------------------------------------~TPgr-----l~dll~~~~~~~~~l~~l~~lVlDE 241 (494)
...+ .||+. +.++|.. +.+-..+.|+|+||
T Consensus 74 IkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~----L~~r~~L~Y~vVDE 149 (641)
T KOG0352|consen 74 IKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG----LANRDVLRYIVVDE 149 (641)
T ss_pred HHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH----HhhhceeeeEEech
Confidence 9765 23321 2233321 12345689999999
Q ss_pred cchhcccC--ChhHHHHHHH--hhcCCCcEEEecCCCChHHHHHHHh---------------------------------
Q 042373 242 ADRMFDMG--FEPQITRIVQ--NIRPDRQAVLFSPTFPPRVEILARK--------------------------------- 284 (494)
Q Consensus 242 aD~ml~~g--f~~~i~~Il~--~l~~~~Q~ilfSAT~~~~v~~l~~~--------------------------------- 284 (494)
||++.+|| |+++...+-. ..-++...+.++||-++.|++-+..
T Consensus 150 AHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~ 229 (641)
T KOG0352|consen 150 AHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDC 229 (641)
T ss_pred hhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhH
Confidence 99999998 8998776632 2335778899999999888654432
Q ss_pred -------------------------------------------------------------------------cCCccce
Q 042373 285 -------------------------------------------------------------------------TNVCNLS 291 (494)
Q Consensus 285 -------------------------------------------------------------------------~g~~~IL 291 (494)
.++++|+
T Consensus 230 ~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI 309 (641)
T KOG0352|consen 230 LTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVI 309 (641)
T ss_pred hHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEE
Confidence 7899999
Q ss_pred eeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc---eEEEEecccCHHHHHHHHH
Q 042373 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CAFRFISEENAIYATDLVK 351 (494)
Q Consensus 292 VaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G---~aitfv~~~~~~~~~~i~~ 351 (494)
+||..+.+|+|-|+|++|||+++|.++.-|.|-.|||||.| .|-.+++.+|.+.++.|++
T Consensus 310 ~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 310 AATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred EEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 99999999999999999999999999999999999988866 4888888888877766654
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.5e-24 Score=238.97 Aligned_cols=219 Identities=23% Similarity=0.276 Sum_probs=169.1
Q ss_pred CCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH
Q 042373 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL 207 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL 207 (494)
....+..++.+.|+..|.++|.+|+-.+.+|+|+|++.+||||||.+|++||+++++.++ ..+||+|.||++|
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~-------~a~AL~lYPtnAL 127 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP-------SARALLLYPTNAL 127 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc-------CccEEEEechhhh
Confidence 455568888899999999999999999999999999999999999999999999998865 3489999999999
Q ss_pred HHhh-----------------------------------------hhhhHHHHHHHh-cCcceecccceEEEEEcccchh
Q 042373 208 VRQQ-----------------------------------------VRRGRMIDLLCK-NGVKITNLTRVTYLVLDEADRM 245 (494)
Q Consensus 208 a~Qi-----------------------------------------~TPgrl~dll~~-~~~~~~~l~~l~~lVlDEaD~m 245 (494)
|+.+ ++|..|..++.+ ......-+++++||||||+|-.
T Consensus 128 a~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY 207 (851)
T COG1205 128 ANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY 207 (851)
T ss_pred HhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec
Confidence 9887 334433332322 2222334678999999999954
Q ss_pred cccCChhHHHHHHHhh-------cCCCcEEEecCCCChHHHHHHHh----------------------------------
Q 042373 246 FDMGFEPQITRIVQNI-------RPDRQAVLFSPTFPPRVEILARK---------------------------------- 284 (494)
Q Consensus 246 l~~gf~~~i~~Il~~l-------~~~~Q~ilfSAT~~~~v~~l~~~---------------------------------- 284 (494)
.-.|...|..+++++ +...|+|+.|||+...-+....-
T Consensus 208 -rGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~ 286 (851)
T COG1205 208 -RGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAES 286 (851)
T ss_pred -cccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhh
Confidence 344666666555544 34789999999975443322221
Q ss_pred ---------------------------------------------------------------------------cCCcc
Q 042373 285 ---------------------------------------------------------------------------TNVCN 289 (494)
Q Consensus 285 ---------------------------------------------------------------------------~g~~~ 289 (494)
.|+..
T Consensus 287 ~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~ 366 (851)
T COG1205 287 IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL 366 (851)
T ss_pred cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc
Confidence 79999
Q ss_pred ceeeccccccCCCCCCceEEEecCCCC-CHhHHHhhhccCCCcc-eEEEEec----ccCHHHHHHHHHHHH
Q 042373 290 LSIANSVRARGLDEKELELVINFDAPN-DYEDYVHHCCQSWLKS-CAFRFIS----EENAIYATDLVKAFE 354 (494)
Q Consensus 290 ILVaTdv~~rGlDi~~v~~VInyd~P~-s~~~yvhR~GRaGr~G-~aitfv~----~~~~~~~~~i~~~l~ 354 (494)
++++|+.+.-||||.++..||++..|. +..+|+||.||+||.+ .++.++. +-+..+...-..+++
T Consensus 367 ~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 367 GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 999999999999999999999999999 8999999999999977 4444443 224555555555555
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-23 Score=223.81 Aligned_cols=143 Identities=20% Similarity=0.158 Sum_probs=109.7
Q ss_pred CCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH
Q 042373 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL 207 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL 207 (494)
+.+.....+.--..-.+..+|...+..+| |+|+|+++|||+|||++...-|+.|+...+ ..++|+++||+-|
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p-------~~KiVF~aP~~pL 118 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP-------KGKVVFLAPTRPL 118 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC-------cceEEEeeCCchH
Confidence 44444444433344578899999999999 999999999999999999999999986544 4689999999999
Q ss_pred HHhh-------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCC
Q 042373 208 VRQQ-------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGF 250 (494)
Q Consensus 208 a~Qi-------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf 250 (494)
+.|+ +||..+..-|..+... .|+.+.++||||||+-....-
T Consensus 119 v~QQ~a~~~~~~~~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~--~ls~fs~iv~DE~Hra~kn~~ 196 (746)
T KOG0354|consen 119 VNQQIACFSIYLIPYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHD--ELSDFSLIVFDECHRTSKNHP 196 (746)
T ss_pred HHHHHHHHhhccCcccceeeccCccCCCchhhhhcccceEEeChHhhhhhccccccc--ccceEEEEEEccccccccccc
Confidence 9997 6888887777765432 389999999999999876554
Q ss_pred hhHHH-HHHHhhcCCCcEEEecCCCChHHHH
Q 042373 251 EPQIT-RIVQNIRPDRQAVLFSPTFPPRVEI 280 (494)
Q Consensus 251 ~~~i~-~Il~~l~~~~Q~ilfSAT~~~~v~~ 280 (494)
...|. ..+..-....|+|++|||.......
T Consensus 197 Y~~Vmr~~l~~k~~~~qILgLTASpG~~~~~ 227 (746)
T KOG0354|consen 197 YNNIMREYLDLKNQGNQILGLTASPGSKLEQ 227 (746)
T ss_pred HHHHHHHHHHhhhccccEEEEecCCCccHHH
Confidence 55555 3444333444999999998765443
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-23 Score=225.91 Aligned_cols=61 Identities=25% Similarity=0.260 Sum_probs=56.5
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+|. .|||+|..++|.++.|+ |+.++||+|||++|++|++.+... |+.++||+||++||.|.
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---------G~~v~VvTptreLA~qd 160 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---------GLPVHVITVNDYLAERD 160 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---------CCeEEEEcCcHHHHHHH
Confidence 566 79999999999999999 999999999999999999987653 77999999999999997
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-23 Score=233.01 Aligned_cols=207 Identities=20% Similarity=0.287 Sum_probs=165.2
Q ss_pred HHHHH-HhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 132 ILETF-SKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 132 ll~~l-~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
++..+ ..+|+....|-|.++|-.++.|+|+++..|||.||++||.||.+-. ++.+|||+|.+.|+..
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------------~gitvVISPL~SLm~D 319 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------------GGVTVVISPLISLMQD 319 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------------CCceEEeccHHHHHHH
Confidence 44444 5589999999999999999999999999999999999999999832 5699999999999987
Q ss_pred h-----------------------------------------hhhhHHHHHHHhcCcceecccc---eEEEEEcccchhc
Q 042373 211 Q-----------------------------------------VRRGRMIDLLCKNGVKITNLTR---VTYLVLDEADRMF 246 (494)
Q Consensus 211 i-----------------------------------------~TPgrl~dll~~~~~~~~~l~~---l~~lVlDEaD~ml 246 (494)
+ .||+.+...-.-. ....+|.. +.++|+||||+..
T Consensus 320 Qv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~-~~~~~L~~~~~lal~vIDEAHCVS 398 (941)
T KOG0351|consen 320 QVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLL-ESLADLYARGLLALFVIDEAHCVS 398 (941)
T ss_pred HHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchh-hHHHhccCCCeeEEEEecHHHHhh
Confidence 6 2343322100000 00112344 8999999999999
Q ss_pred ccC--ChhHHHHHHHhh--cCCCcEEEecCCCChHHHHHHHh--------------------------------------
Q 042373 247 DMG--FEPQITRIVQNI--RPDRQAVLFSPTFPPRVEILARK-------------------------------------- 284 (494)
Q Consensus 247 ~~g--f~~~i~~Il~~l--~~~~Q~ilfSAT~~~~v~~l~~~-------------------------------------- 284 (494)
.|| |++...++.... -+...+|.++||.+..+..-+-.
T Consensus 399 qWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~ 478 (941)
T KOG0351|consen 399 QWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEE 478 (941)
T ss_pred hhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHH
Confidence 998 899888764433 23478999999998887544332
Q ss_pred ------------------------------------------------------cCCccceeeccccccCCCCCCceEEE
Q 042373 285 ------------------------------------------------------TNVCNLSIANSVRARGLDEKELELVI 310 (494)
Q Consensus 285 ------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VI 310 (494)
.++++|+|||=.+.+|||.|+|+.||
T Consensus 479 ~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~Vi 558 (941)
T KOG0351|consen 479 SKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVI 558 (941)
T ss_pred hhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEE
Confidence 78999999999999999999999999
Q ss_pred ecCCCCCHhHHHhhhccCCCcce---EEEEecccCHHHHHHHHH
Q 042373 311 NFDAPNDYEDYVHHCCQSWLKSC---AFRFISEENAIYATDLVK 351 (494)
Q Consensus 311 nyd~P~s~~~yvhR~GRaGr~G~---aitfv~~~~~~~~~~i~~ 351 (494)
||.+|.+++.|.|-+|||||.|. |++|+...+...++.+..
T Consensus 559 H~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 559 HYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred ECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 99999999999999999999775 999999887766655554
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-23 Score=237.39 Aligned_cols=177 Identities=20% Similarity=0.294 Sum_probs=132.0
Q ss_pred HHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEE--cc----chhHHHhh-------------
Q 042373 151 ASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVM--AP----TGELVRQQ------------- 211 (494)
Q Consensus 151 aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl--~P----TreLa~Qi------------- 211 (494)
.+..+..++.+|++|+||||||. .+|.+..-... +..+.|+ -| +++||.|+
T Consensus 82 Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~--------g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VG 151 (1294)
T PRK11131 82 ILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR--------GVKGLIGHTQPRRLAARTVANRIAEELETELGGCVG 151 (1294)
T ss_pred HHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC--------CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceec
Confidence 34455556677888999999999 67855332211 2222333 35 67888887
Q ss_pred -----------------hhhhHHHHHHHhcCcceecccceEEEEEcccc-hhcccCChhH-HHHHHHhhcCCCcEEEecC
Q 042373 212 -----------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEAD-RMFDMGFEPQ-ITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 212 -----------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD-~ml~~gf~~~-i~~Il~~l~~~~Q~ilfSA 272 (494)
+|||+|++.+... ..|+++++||||||| ++++++|... +..++.. +++.|+|+|||
T Consensus 152 Y~vrf~~~~s~~t~I~v~TpG~LL~~l~~d----~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdlKvILmSA 226 (1294)
T PRK11131 152 YKVRFNDQVSDNTMVKLMTDGILLAEIQQD----RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLKVIITSA 226 (1294)
T ss_pred eeecCccccCCCCCEEEEChHHHHHHHhcC----CccccCcEEEecCccccccccchHHHHHHHhhhc-CCCceEEEeeC
Confidence 7999999998753 248999999999999 6899988653 4444332 35789999999
Q ss_pred CCChHHHHHHHh--------------------------------------------------------------------
Q 042373 273 TFPPRVEILARK-------------------------------------------------------------------- 284 (494)
Q Consensus 273 T~~~~v~~l~~~-------------------------------------------------------------------- 284 (494)
|++.+ .+++.
T Consensus 227 Tid~e--~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae 304 (1294)
T PRK11131 227 TIDPE--RFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTAD 304 (1294)
T ss_pred CCCHH--HHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHH
Confidence 98632 11111
Q ss_pred ------------------------------cCCccceeeccccccCCCCCCceEEEecC---------------CC---C
Q 042373 285 ------------------------------TNVCNLSIANSVRARGLDEKELELVINFD---------------AP---N 316 (494)
Q Consensus 285 ------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd---------------~P---~ 316 (494)
.|..+||||||++++|||||+|++|||++ +| .
T Consensus 305 ~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~i 384 (1294)
T PRK11131 305 ALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPI 384 (1294)
T ss_pred HHHhcCCCcceEeecccCCCHHHHHHHhcccCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeec
Confidence 46789999999999999999999999986 34 4
Q ss_pred CHhHHHhhhccCCC--cceEEEEecccCHH
Q 042373 317 DYEDYVHHCCQSWL--KSCAFRFISEENAI 344 (494)
Q Consensus 317 s~~~yvhR~GRaGr--~G~aitfv~~~~~~ 344 (494)
|..+|+||+||+|| .|.||.|+++.+..
T Consensus 385 Skasa~QRaGRAGR~~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 385 SQASANQRKGRCGRVSEGICIRLYSEDDFL 414 (1294)
T ss_pred CHhhHhhhccccCCCCCcEEEEeCCHHHHH
Confidence 56899999999998 89999999986543
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.7e-23 Score=211.68 Aligned_cols=53 Identities=30% Similarity=0.391 Sum_probs=46.7
Q ss_pred hHHHHHHHHHcCCC--EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 147 IQAPASALIISGLD--SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 147 iQ~~aip~il~grd--vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.|.++++.+..+.+ ++++||||||||++|++|++.. +..+++++||++|+.|+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------------~~~~~~~~P~~aL~~~~ 55 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------ENDTIALYPTNALIEDQ 55 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------------CCCEEEEeChHHHHHHH
Confidence 59999999999975 7889999999999999999842 34689999999999986
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-22 Score=209.22 Aligned_cols=127 Identities=19% Similarity=0.144 Sum_probs=96.3
Q ss_pred CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---------
Q 042373 141 HENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--------- 211 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--------- 211 (494)
.-+|..+|.......+.+ |++++.|||-|||+..++-+...+...+ + ++|+|+||+-|+.|+
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~-------~-kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG-------G-KVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC-------C-eEEEecCCchHHHHHHHHHHHHhC
Confidence 346777888877777755 9999999999999999998888775432 4 899999999999998
Q ss_pred -----------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhc
Q 042373 212 -----------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIR 262 (494)
Q Consensus 212 -----------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~ 262 (494)
+||..+..=|..+ .+++.++.++|+|||||-....-.-.|.+.+-.-.
T Consensus 84 ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~G---rid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~ 160 (542)
T COG1111 84 IPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAG---RIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSA 160 (542)
T ss_pred CChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcC---ccChHHceEEEechhhhccCcchHHHHHHHHHHhc
Confidence 6888776555543 56899999999999999764433334444333344
Q ss_pred CCCcEEEecCCCChHHH
Q 042373 263 PDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 263 ~~~Q~ilfSAT~~~~v~ 279 (494)
.++.++.+|||.....+
T Consensus 161 k~~~ilgLTASPGs~~e 177 (542)
T COG1111 161 KNPLILGLTASPGSDLE 177 (542)
T ss_pred cCceEEEEecCCCCCHH
Confidence 67789999999765443
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-22 Score=223.22 Aligned_cols=96 Identities=22% Similarity=0.327 Sum_probs=80.5
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
+|. .|+++|..+++.++.|+ |+.++||+|||++|++|++..... |+.++|++||++||.|.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---------G~~v~VvTpt~~LA~qd~e~~~~l 142 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---------GKGVHLITVNDYLAKRDAEEMGQV 142 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 677 89999999999999987 999999999999999999976654 77899999999999997
Q ss_pred -------------------------------hhhhHH-HHHHHhcC---cceecccceEEEEEcccchhc
Q 042373 212 -------------------------------VRRGRM-IDLLCKNG---VKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 212 -------------------------------~TPgrl-~dll~~~~---~~~~~l~~l~~lVlDEaD~ml 246 (494)
+||++| .|+|..+- .....++.+.|+||||||+|+
T Consensus 143 ~~~lGl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 143 YEFLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HhhcCCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 688888 55555321 111356889999999999977
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=220.96 Aligned_cols=123 Identities=21% Similarity=0.191 Sum_probs=90.4
Q ss_pred CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--------
Q 042373 140 NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------- 211 (494)
Q Consensus 140 g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------- 211 (494)
+.-.|.++|..++..++.+ |+|+++|||+|||+++++++...+.. + +.++|||+||++|+.|+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-~-------~~~vLvl~Pt~~L~~Q~~~~~~~~~ 82 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-K-------GGKVLILAPTKPLVEQHAEFFRKFL 82 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-C-------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 3457899999999988877 99999999999999999999988732 1 56899999999999887
Q ss_pred ------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhh
Q 042373 212 ------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI 261 (494)
Q Consensus 212 ------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l 261 (494)
+||..+...+..+ .+.+.++++|||||||++........+...+...
T Consensus 83 ~~~~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~ 159 (773)
T PRK13766 83 NIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAG---RISLEDVSLLIFDEAHRAVGNYAYVYIAERYHED 159 (773)
T ss_pred CCCCceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcC---CCChhhCcEEEEECCccccccccHHHHHHHHHhc
Confidence 4666555444332 3467889999999999986443333333333333
Q ss_pred cCCCcEEEecCCC
Q 042373 262 RPDRQAVLFSPTF 274 (494)
Q Consensus 262 ~~~~Q~ilfSAT~ 274 (494)
.+..++++||||.
T Consensus 160 ~~~~~il~lTaTP 172 (773)
T PRK13766 160 AKNPLVLGLTASP 172 (773)
T ss_pred CCCCEEEEEEcCC
Confidence 3445567777764
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=219.11 Aligned_cols=141 Identities=24% Similarity=0.256 Sum_probs=115.8
Q ss_pred CCCHHHHHHHHhCCCCCCChhHHHHHHHHH-cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch
Q 042373 127 GLTTKILETFSKLNHENPVAIQAPASALII-SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG 205 (494)
Q Consensus 127 ~L~~~ll~~l~~~g~~~ptpiQ~~aip~il-~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr 205 (494)
.+.+.+.+.++..|+.+..+-|+.++...+ .++|+|+++|||||||+..++.+++.+.+. +.++|+|||+|
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--------~~k~vYivPlk 86 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--------GGKVVYIVPLK 86 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--------CCcEEEEeChH
Confidence 478888888888999888887777776655 559999999999999999999999999764 46899999999
Q ss_pred hHHHhh-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCC
Q 042373 206 ELVRQQ-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGF 250 (494)
Q Consensus 206 eLa~Qi-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf 250 (494)
+||.++ +||+++-.++.+.. .-+..+++||+||+|.+.+...
T Consensus 87 ALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~---~~~~~V~lvViDEiH~l~d~~R 163 (766)
T COG1204 87 ALAEEKYEEFSRLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRP---SWIEEVDLVVIDEIHLLGDRTR 163 (766)
T ss_pred HHHHHHHHHhhhHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCc---chhhcccEEEEeeeeecCCccc
Confidence 999997 68888744444332 2567899999999999988767
Q ss_pred hhHHHHHHHhhcC---CCcEEEecCCCChHH
Q 042373 251 EPQITRIVQNIRP---DRQAVLFSPTFPPRV 278 (494)
Q Consensus 251 ~~~i~~Il~~l~~---~~Q~ilfSAT~~~~v 278 (494)
.+.++.|+...+. ..|++.+|||+|+..
T Consensus 164 G~~lE~iv~r~~~~~~~~rivgLSATlpN~~ 194 (766)
T COG1204 164 GPVLESIVARMRRLNELIRIVGLSATLPNAE 194 (766)
T ss_pred CceehhHHHHHHhhCcceEEEEEeeecCCHH
Confidence 7888888777654 379999999998753
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=180.03 Aligned_cols=127 Identities=34% Similarity=0.554 Sum_probs=111.5
Q ss_pred ChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------------
Q 042373 145 VAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------- 211 (494)
Q Consensus 145 tpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------- 211 (494)
||+|.++|+.+++|+|+++.||||+|||++|++|++..+.... ...+||++|+++|+.|+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~-------~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 73 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK-------DARVLIIVPTRALAEQQFERLRKFFSNTNV 73 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS-------SSEEEEEESSHHHHHHHHHHHHHHTTTTTS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC-------CceEEEEeeccccccccccccccccccccc
Confidence 7999999999999999999999999999999999999987642 45899999999999998
Q ss_pred ---------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcC-
Q 042373 212 ---------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP- 263 (494)
Q Consensus 212 ---------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~- 263 (494)
+||.+|.+++.... .++.++++||+||+|.+..+++...+..|+..+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~---~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~ 150 (169)
T PF00270_consen 74 RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK---INISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRF 150 (169)
T ss_dssp SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS---STGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTT
T ss_pred ccccccccccccccccccccccccccccCcchhhccccccc---cccccceeeccCcccccccccHHHHHHHHHHHhcCC
Confidence 78999999888732 26777999999999999998889999999988843
Q ss_pred -CCcEEEecCCCChHHHHH
Q 042373 264 -DRQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 264 -~~Q~ilfSAT~~~~v~~l 281 (494)
..|++++|||+++.++.+
T Consensus 151 ~~~~~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 151 KNIQIILLSATLPSNVEKL 169 (169)
T ss_dssp TTSEEEEEESSSTHHHHHH
T ss_pred CCCcEEEEeeCCChhHhhC
Confidence 589999999999777654
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-21 Score=212.40 Aligned_cols=128 Identities=20% Similarity=0.141 Sum_probs=90.1
Q ss_pred CCChhHHHHHHHHHcC---CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh-------
Q 042373 143 NPVAIQAPASALIISG---LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV------- 212 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g---rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~------- 212 (494)
.+|+.|++++..++.+ ++++++++||||||.+|+.++...+.. |.++|||+||++|+.|+.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---------g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---------GKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 6899999999999984 899999999999999999988777643 568999999999999981
Q ss_pred -----------hhh-HH--HHHHHhcCcc---------eecccceEEEEEcccchhcccCC---hhHHHH--HHHhhcCC
Q 042373 213 -----------RRG-RM--IDLLCKNGVK---------ITNLTRVTYLVLDEADRMFDMGF---EPQITR--IVQNIRPD 264 (494)
Q Consensus 213 -----------TPg-rl--~dll~~~~~~---------~~~l~~l~~lVlDEaD~ml~~gf---~~~i~~--Il~~l~~~ 264 (494)
++. +. +.-+..+... ...++++.+||+||+|.....+. .-+.+. ++.....+
T Consensus 215 g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~ 294 (679)
T PRK05580 215 GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLEN 294 (679)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccC
Confidence 221 11 1111111111 13478899999999997653321 111222 23334578
Q ss_pred CcEEEecCCCChHHH
Q 042373 265 RQAVLFSPTFPPRVE 279 (494)
Q Consensus 265 ~Q~ilfSAT~~~~v~ 279 (494)
.|++++|||.+.+..
T Consensus 295 ~~~il~SATps~~s~ 309 (679)
T PRK05580 295 IPVVLGSATPSLESL 309 (679)
T ss_pred CCEEEEcCCCCHHHH
Confidence 899999999765543
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-21 Score=210.97 Aligned_cols=97 Identities=22% Similarity=0.368 Sum_probs=74.6
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
+|. .|+++|...++.+..| .|+.++||+|||++|++|++.+.+. ++.++|++||++||.|.
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~---------g~~V~VVTpn~yLA~Rdae~m~~l 134 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT---------GKGAMLVTTNDYLAKRDAEEMGPV 134 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc---------CCceEEeCCCHHHHHHHHHHHHHH
Confidence 565 6677776666665555 6999999999999999998877653 55699999999999987
Q ss_pred -----------------------------------hhhhHH-HHHHHhc---CcceecccceEEEEEcccchhcc
Q 042373 212 -----------------------------------VRRGRM-IDLLCKN---GVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 212 -----------------------------------~TPgrl-~dll~~~---~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+||++| .|+|... ......++.+.++|+||||.|+-
T Consensus 135 ~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILi 209 (762)
T TIGR03714 135 YEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLL 209 (762)
T ss_pred HhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhh
Confidence 788888 5555321 11123578899999999999863
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-21 Score=192.96 Aligned_cols=187 Identities=21% Similarity=0.300 Sum_probs=153.1
Q ss_pred ccCCCCHHHHHHHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc
Q 042373 124 RQTGLTTKILETFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202 (494)
Q Consensus 124 ~~l~L~~~ll~~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~ 202 (494)
++++.+.+....|+. +..++..|.|..+|.+.|+|.|++++.|||.||++||.||.+.. ...+||+|
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------------dg~alvi~ 141 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------------DGFALVIC 141 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------------CCceEeec
Confidence 456777887777765 56789999999999999999999999999999999999999853 45799999
Q ss_pred cchhHHHhh-----------------------------------------hhhhHHHH---HHHhcCcceecccceEEEE
Q 042373 203 PTGELVRQQ-----------------------------------------VRRGRMID---LLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 203 PTreLa~Qi-----------------------------------------~TPgrl~d---ll~~~~~~~~~l~~l~~lV 238 (494)
|...|+..+ .||.++.. ++++- .+.+....++++-
T Consensus 142 plislmedqil~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkl-eka~~~~~~~~ia 220 (695)
T KOG0353|consen 142 PLISLMEDQILQLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKL-EKALEAGFFKLIA 220 (695)
T ss_pred hhHHHHHHHHHHHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHH-HHHhhcceeEEEe
Confidence 999998765 46665421 22211 1234567889999
Q ss_pred EcccchhcccC--ChhHHHH--HHHhhcCCCcEEEecCCCChHHHHHHHh------------------------------
Q 042373 239 LDEADRMFDMG--FEPQITR--IVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------ 284 (494)
Q Consensus 239 lDEaD~ml~~g--f~~~i~~--Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------ 284 (494)
+||+|+-..|| |+++... |+.+-=++..++.++||-+..+..-++.
T Consensus 221 idevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~ 300 (695)
T KOG0353|consen 221 IDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNE 300 (695)
T ss_pred ecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCCh
Confidence 99999999998 8887654 4555447888999999988777655543
Q ss_pred ----------------------------------------------------------------cCCccceeeccccccC
Q 042373 285 ----------------------------------------------------------------TNVCNLSIANSVRARG 300 (494)
Q Consensus 285 ----------------------------------------------------------------~g~~~ILVaTdv~~rG 300 (494)
.|+++|+|||-.+..|
T Consensus 301 dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmg 380 (695)
T KOG0353|consen 301 DDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMG 380 (695)
T ss_pred HHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeeccc
Confidence 7899999999999999
Q ss_pred CCCCCceEEEecCCCCCHhHHHh
Q 042373 301 LDEKELELVINFDAPNDYEDYVH 323 (494)
Q Consensus 301 lDi~~v~~VInyd~P~s~~~yvh 323 (494)
||-|+|++|||..+|.+++.|.|
T Consensus 381 idkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 381 IDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred CCCCCeeEEEecccchhHHHHHH
Confidence 99999999999999999999999
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-21 Score=211.75 Aligned_cols=97 Identities=22% Similarity=0.269 Sum_probs=81.5
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
+|. .|+++|..+.+.++.|+ |+.++||+|||++|++|++-..+. |..++|++||++||.|.
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~VvTpt~~LA~qdae~~~~l 120 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAEWMGQV 120 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---------CCCEEEEcCCHHHHHHHHHHHHHH
Confidence 566 79999999999998887 999999999999999999644443 45699999999999997
Q ss_pred ------------------------------hhhhHH-HHHHHhcCc---ceecccceEEEEEcccchhcc
Q 042373 212 ------------------------------VRRGRM-IDLLCKNGV---KITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 212 ------------------------------~TPgrl-~dll~~~~~---~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+||++| .|+|..+-. ....++.+.++|+||+|+|+-
T Consensus 121 ~~~LGLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 121 YRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred hccCCCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 799999 898876411 124678999999999999874
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-20 Score=216.76 Aligned_cols=191 Identities=20% Similarity=0.257 Sum_probs=135.9
Q ss_pred CCCCCCChhHH---HHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh----h
Q 042373 139 LNHENPVAIQA---PASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ----Q 211 (494)
Q Consensus 139 ~g~~~ptpiQ~---~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q----i 211 (494)
..|....||.. +.+..+..++.+|++|+||||||. .+|.+..-... +. ....++.-|.|--|.. +
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~-----~~-~~~I~~tQPRRlAA~svA~Rv 131 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGR-----GS-HGLIGHTQPRRLAARTVAQRI 131 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCC-----CC-CceEecCCccHHHHHHHHHHH
Confidence 44555566655 334445555677888999999998 56765432111 11 1233334465543333 3
Q ss_pred ------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccc-hhcccCChhH-HHHHHH
Q 042373 212 ------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEAD-RMFDMGFEPQ-ITRIVQ 259 (494)
Q Consensus 212 ------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD-~ml~~gf~~~-i~~Il~ 259 (494)
+|+|+|++.+.... .|+++++||||||| ++++.+|.-. +..++.
T Consensus 132 A~elg~~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~----~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~ 207 (1283)
T TIGR01967 132 AEELGTPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDR----FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP 207 (1283)
T ss_pred HHHhCCCcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCc----ccccCcEEEEcCcchhhccchhHHHHHHHHHh
Confidence 79999999887542 48999999999999 6999888654 555544
Q ss_pred hhcCCCcEEEecCCCChHHHHHHHh-------------------------------------------------------
Q 042373 260 NIRPDRQAVLFSPTFPPRVEILARK------------------------------------------------------- 284 (494)
Q Consensus 260 ~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------------------------- 284 (494)
. +++.|+|+||||++.. .+++.
T Consensus 208 ~-rpdLKlIlmSATld~~--~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILV 284 (1283)
T TIGR01967 208 R-RPDLKIIITSATIDPE--RFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILI 284 (1283)
T ss_pred h-CCCCeEEEEeCCcCHH--HHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEE
Confidence 3 4688999999997531 11110
Q ss_pred -------------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCC-----
Q 042373 285 -------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPN----- 316 (494)
Q Consensus 285 -------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~----- 316 (494)
.+..+|+|||+++++||||++|++|||++++.
T Consensus 285 FLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd 364 (1283)
T TIGR01967 285 FLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHSGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYS 364 (1283)
T ss_pred eCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCCCceEEEeccHHHhccccCCeeEEEeCCCccccccc
Confidence 23468999999999999999999999999543
Q ss_pred -------------CHhHHHhhhccCCC--cceEEEEecccCHH
Q 042373 317 -------------DYEDYVHHCCQSWL--KSCAFRFISEENAI 344 (494)
Q Consensus 317 -------------s~~~yvhR~GRaGr--~G~aitfv~~~~~~ 344 (494)
|..+|+||+||+|| .|.||.|+++.+..
T Consensus 365 ~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 365 YRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFN 407 (1283)
T ss_pred cccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHH
Confidence 56899999999998 89999999976543
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-20 Score=204.43 Aligned_cols=235 Identities=19% Similarity=0.188 Sum_probs=167.3
Q ss_pred hCCCCCCChhHHHHHHHHHc-CCCEEEEcCCCCCchhhhHHHHHHHHHcCC-CCCCCCCCCeEEEEccchhHHHhh----
Q 042373 138 KLNHENPVAIQAPASALIIS-GLDSVAITETGSGKTLAFLLPMLRHIWEQP-PVVPGDDSPVGLVMAPTGELVRQQ---- 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~-grdvi~~a~TGSGKTlafllpil~~l~~~~-~~~~~~~~p~aLIl~PTreLa~Qi---- 211 (494)
-++|.++..||+.++|.+.. ..|+|+|||||||||-.|+|.||+.+.... ......++.++++|+|+++||..+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 47889999999999999885 479999999999999999999999997521 122233478999999999999987
Q ss_pred --------------------------------hhhhHHHHHHHhcCcc-eecccceEEEEEcccchhcccCChhHHHHHH
Q 042373 212 --------------------------------VRRGRMIDLLCKNGVK-ITNLTRVTYLVLDEADRMFDMGFEPQITRIV 258 (494)
Q Consensus 212 --------------------------------~TPgrl~dll~~~~~~-~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il 258 (494)
.||++. |++.+.+.. ..-++.|++||+||+|.|-+ ...+.++.|+
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEtiV 262 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLETIV 262 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHHHHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHHHH
Confidence 577764 777664321 12267899999999996664 4567777777
Q ss_pred Hhhc-------CCCcEEEecCCCChHHHHHHHh-----------------------------------------------
Q 042373 259 QNIR-------PDRQAVLFSPTFPPRVEILARK----------------------------------------------- 284 (494)
Q Consensus 259 ~~l~-------~~~Q~ilfSAT~~~~v~~l~~~----------------------------------------------- 284 (494)
.+.. ...+++.+|||+|+- +.+++.
T Consensus 263 aRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~k 341 (1230)
T KOG0952|consen 263 ARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDK 341 (1230)
T ss_pred HHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHH
Confidence 6553 356899999999874 344443
Q ss_pred ------------------------------------------------------------------------------cC
Q 042373 285 ------------------------------------------------------------------------------TN 286 (494)
Q Consensus 285 ------------------------------------------------------------------------------~g 286 (494)
.|
T Consensus 342 v~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G 421 (1230)
T KOG0952|consen 342 VVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEG 421 (1230)
T ss_pred HHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcC
Confidence 89
Q ss_pred CccceeeccccccCCCCCCceEEE----ecCCCC------CHhHHHhhhccCCC-----cceEEEEecccCHHHHHHHHH
Q 042373 287 VCNLSIANSVRARGLDEKELELVI----NFDAPN------DYEDYVHHCCQSWL-----KSCAFRFISEENAIYATDLVK 351 (494)
Q Consensus 287 ~~~ILVaTdv~~rGlDi~~v~~VI----nyd~P~------s~~~yvhR~GRaGr-----~G~aitfv~~~~~~~~~~i~~ 351 (494)
.++||+||..+++|+++|.--++| -||.-. .+-+-+|..||||| .|.+|.+.+.+-..+ .+.
T Consensus 422 ~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~---Y~s 498 (1230)
T KOG0952|consen 422 HIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDH---YES 498 (1230)
T ss_pred CceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHH---HHH
Confidence 999999999999999999865444 244433 46677888888887 688886666543332 233
Q ss_pred HHHhccCcchHHHHHHHHHHHHHHhcc
Q 042373 352 AFELSELVVRDDLKAVADSFIAKVNLG 378 (494)
Q Consensus 352 ~l~~~~~~vp~~l~~~~~~~~~~~~~~ 378 (494)
+|.....-=...+..+++.+..++..|
T Consensus 499 Ll~~~~piES~~~~~L~dnLnAEi~Lg 525 (1230)
T KOG0952|consen 499 LLTGQNPIESQLLPCLIDNLNAEISLG 525 (1230)
T ss_pred HHcCCChhHHHHHHHHHHhhhhheeec
Confidence 333221111234455666555554433
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.8e-20 Score=190.78 Aligned_cols=207 Identities=18% Similarity=0.247 Sum_probs=167.5
Q ss_pred CcccCCCCHHHHHHHHhCCCCCCChhHHHHHHH-HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASAL-IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 122 ~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~-il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
..+++.+++.+.+.|+..||+.+.|+|..|+.. ++.|+|+++++.|+||||+.--+.-+..++.. |.+.|+
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~--------g~Kmlf 266 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG--------GKKMLF 266 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC--------CCeEEE
Confidence 347789999999999999999999999999988 67999999999999999999999888888753 668999
Q ss_pred EccchhHHHhh-------------------------------------------hhhhHHHHHHHhcCcceecccceEEE
Q 042373 201 MAPTGELVRQQ-------------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYL 237 (494)
Q Consensus 201 l~PTreLa~Qi-------------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~l 237 (494)
|+|..+||+|- +|...+ |++-+.+ ..+.+|..|
T Consensus 267 LvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGi-D~lLRtg---~~lgdiGtV 342 (830)
T COG1202 267 LVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGI-DYLLRTG---KDLGDIGTV 342 (830)
T ss_pred EehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhH-HHHHHcC---CcccccceE
Confidence 99999999997 344444 4444432 368899999
Q ss_pred EEcccchhcccCChhHHHHHHHhhc---CCCcEEEecCCCChHHHHHHHh------------------------------
Q 042373 238 VLDEADRMFDMGFEPQITRIVQNIR---PDRQAVLFSPTFPPRVEILARK------------------------------ 284 (494)
Q Consensus 238 VlDEaD~ml~~gf~~~i~~Il~~l~---~~~Q~ilfSAT~~~~v~~l~~~------------------------------ 284 (494)
|+||+|.|-+....+.+.-++.+++ ++.|.|.+|||+.+. +.++++
T Consensus 343 VIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~RPVplErHlvf~~~e~eK~~ 421 (830)
T COG1202 343 VIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDERPVPLERHLVFARNESEKWD 421 (830)
T ss_pred EeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecCCCCChhHeeeeecCchHHHH
Confidence 9999999888666666666665554 689999999998654 334443
Q ss_pred ------------------------------------------------------------------cCCccceeeccccc
Q 042373 285 ------------------------------------------------------------------TNVCNLSIANSVRA 298 (494)
Q Consensus 285 ------------------------------------------------------------------~g~~~ILVaTdv~~ 298 (494)
.+.+.++|+|..++
T Consensus 422 ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~ 501 (830)
T COG1202 422 IIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALA 501 (830)
T ss_pred HHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhh
Confidence 78899999999999
Q ss_pred cCCCCCCceEEEecCCC-----CCHhHHHhhhccCCC-----cceEEEEecccC
Q 042373 299 RGLDEKELELVINFDAP-----NDYEDYVHHCCQSWL-----KSCAFRFISEEN 342 (494)
Q Consensus 299 rGlDi~~v~~VInyd~P-----~s~~~yvhR~GRaGr-----~G~aitfv~~~~ 342 (494)
-|+|+|.-.+|+ =.+. -++.+|.|++||||| .|.+|.++.+.-
T Consensus 502 AGVDFPASQVIF-EsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 502 AGVDFPASQVIF-ESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred cCCCCchHHHHH-HHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 999999754433 1111 378899999999998 688999998753
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-18 Score=189.72 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=59.9
Q ss_pred CCccceeeccccccCCCCCCceEEEecCCC-CCHhHHHhhhccCCC---cceE-------EEEeccc--CHHHHHHHHHH
Q 042373 286 NVCNLSIANSVRARGLDEKELELVINFDAP-NDYEDYVHHCCQSWL---KSCA-------FRFISEE--NAIYATDLVKA 352 (494)
Q Consensus 286 g~~~ILVaTdv~~rGlDi~~v~~VInyd~P-~s~~~yvhR~GRaGr---~G~a-------itfv~~~--~~~~~~~i~~~ 352 (494)
+.+++||+|+++.+|||+|++++||+++.| .|..+|+||+||.+| .|.+ |+|++.+ +..++..-.++
T Consensus 541 ~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~f 620 (732)
T TIGR00603 541 PKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRF 620 (732)
T ss_pred CCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHH
Confidence 478999999999999999999999999998 599999999999554 3344 8999976 56677777777
Q ss_pred HHhcc
Q 042373 353 FELSE 357 (494)
Q Consensus 353 l~~~~ 357 (494)
|-..+
T Consensus 621 l~~qG 625 (732)
T TIGR00603 621 LVDQG 625 (732)
T ss_pred HHHCC
Confidence 76544
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-17 Score=175.75 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=69.4
Q ss_pred EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh------------------hhh-HH--HHH
Q 042373 162 VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV------------------RRG-RM--IDL 220 (494)
Q Consensus 162 i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~------------------TPg-rl--~dl 220 (494)
+++|+||||||.+|+..+...+ .. |.++|||+|+++|+.|+. ++. |. +.-
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~~--------g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~ 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-AL--------GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRK 71 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-Hc--------CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHH
Confidence 4689999999999976654444 22 568999999999999981 121 11 111
Q ss_pred HHhcCcc---------eecccceEEEEEcccchhcccC---ChhHHHH--HHHhhcCCCcEEEecCCCChHHHH
Q 042373 221 LCKNGVK---------ITNLTRVTYLVLDEADRMFDMG---FEPQITR--IVQNIRPDRQAVLFSPTFPPRVEI 280 (494)
Q Consensus 221 l~~~~~~---------~~~l~~l~~lVlDEaD~ml~~g---f~~~i~~--Il~~l~~~~Q~ilfSAT~~~~v~~ 280 (494)
+..+... ...++++.+|||||+|.....+ ..-+... ++.....+.++|++|||.+.+...
T Consensus 72 ~~~g~~~IVVGTrsalf~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~ 145 (505)
T TIGR00595 72 VKNGEILVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYH 145 (505)
T ss_pred HHcCCCCEEECChHHHcCcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHH
Confidence 1111111 1247899999999999866433 1111221 222334688999999996654443
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-17 Score=181.70 Aligned_cols=243 Identities=17% Similarity=0.179 Sum_probs=180.8
Q ss_pred CCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCC--CCCeEEEEc
Q 042373 126 TGLTTKILETFSKLNHENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGD--DSPVGLVMA 202 (494)
Q Consensus 126 l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~--~~p~aLIl~ 202 (494)
..++.+-..++ .|+..+.+||....++.+.+ .++++|||||+|||...++-+|+.+-.......+. ...++++++
T Consensus 294 selP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIA 371 (1674)
T KOG0951|consen 294 SELPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIA 371 (1674)
T ss_pred cCCcchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEe
Confidence 34555555544 56778999999999999988 59999999999999999999999997765433222 134799999
Q ss_pred cchhHHHhh------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhc
Q 042373 203 PTGELVRQQ------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 203 PTreLa~Qi------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml 246 (494)
|+.+|+..+ +||++. |.+.+++......+-++++|+||.|.+-
T Consensus 372 PmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLLh 450 (1674)
T KOG0951|consen 372 PMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLLH 450 (1674)
T ss_pred eHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhcc
Confidence 999999887 788874 7888876666667788999999999664
Q ss_pred ccCChhHHHHHHHhh-------cCCCcEEEecCCCChHH--HHHHHh---------------------------------
Q 042373 247 DMGFEPQITRIVQNI-------RPDRQAVLFSPTFPPRV--EILARK--------------------------------- 284 (494)
Q Consensus 247 ~~gf~~~i~~Il~~l-------~~~~Q~ilfSAT~~~~v--~~l~~~--------------------------------- 284 (494)
| ...+.++.|..+. ......+++|||+|+.. ..+.+.
T Consensus 451 D-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~ 529 (1674)
T KOG0951|consen 451 D-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRF 529 (1674)
T ss_pred c-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHH
Confidence 4 4567777776544 23688999999999753 332222
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 530 qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpyg 609 (1674)
T KOG0951|consen 530 QAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYG 609 (1674)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhcc
Confidence
Q ss_pred ---------------------cCCccceeeccccccCCCCCCceEEEe----cCC------CCCHhHHHhhhccCCC---
Q 042373 285 ---------------------TNVCNLSIANSVRARGLDEKELELVIN----FDA------PNDYEDYVHHCCQSWL--- 330 (494)
Q Consensus 285 ---------------------~g~~~ILVaTdv~~rGlDi~~v~~VIn----yd~------P~s~~~yvhR~GRaGr--- 330 (494)
.|.++|||+|-.++||++.|.-.++|- ||. +.++.+.+||.|||||
T Consensus 610 faIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~ 689 (1674)
T KOG0951|consen 610 FAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQY 689 (1674)
T ss_pred ceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCcc
Confidence 899999999999999999999777773 554 4578899999999998
Q ss_pred --cceEEEEecccCHHHHHHHHHHHHhccCcch---HHHHHHHHHHHHHHhcc
Q 042373 331 --KSCAFRFISEENAIYATDLVKAFELSELVVR---DDLKAVADSFIAKVNLG 378 (494)
Q Consensus 331 --~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp---~~l~~~~~~~~~~~~~~ 378 (494)
.|.+|..-...+.. ..+...+|.+| +.+..+++.+..++-.|
T Consensus 690 D~~gegiiit~~se~q------yyls~mn~qLpiesq~~~rl~d~lnaeiv~G 736 (1674)
T KOG0951|consen 690 DTCGEGIIITDHSELQ------YYLSLMNQQLPIESQFVSRLADCLNAEIVLG 736 (1674)
T ss_pred CcCCceeeccCchHhh------hhHHhhhhcCCChHHHHHHhhhhhhhhhhcc
Confidence 45566554444433 34455566665 44566777666665544
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=174.66 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=108.2
Q ss_pred hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------
Q 042373 138 KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------ 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------ 211 (494)
...| .|...|++||-++..|-.|++.|+|.+|||+..-..+.-.-.+ +.+++|-+|.++|.+|-
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h---------~TR~iYTSPIKALSNQKfRDFk~ 362 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH---------MTRTIYTSPIKALSNQKFRDFKE 362 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh---------ccceEecchhhhhccchHHHHHH
Confidence 4556 6899999999999999999999999999998866555433222 67899999999999996
Q ss_pred ----------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEE
Q 042373 212 ----------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269 (494)
Q Consensus 212 ----------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~il 269 (494)
.|...|..+|.++.. -++++.+|||||+|.+.|....-..+.++-.+|+..++|+
T Consensus 363 tF~DvgLlTGDvqinPeAsCLIMTTEILRsMLYrgad---liRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~Il 439 (1248)
T KOG0947|consen 363 TFGDVGLLTGDVQINPEASCLIMTTEILRSMLYRGAD---LIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFIL 439 (1248)
T ss_pred hccccceeecceeeCCCcceEeehHHHHHHHHhcccc---hhhccceEEEeeeeecccccccccceeeeeeccccceEEE
Confidence 577888888887643 4788999999999999998766677777888999999999
Q ss_pred ecCCCChHHH
Q 042373 270 FSPTFPPRVE 279 (494)
Q Consensus 270 fSAT~~~~v~ 279 (494)
+|||.|+..+
T Consensus 440 LSATVPN~~E 449 (1248)
T KOG0947|consen 440 LSATVPNTLE 449 (1248)
T ss_pred EeccCCChHH
Confidence 9999998764
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=173.69 Aligned_cols=64 Identities=27% Similarity=0.174 Sum_probs=49.0
Q ss_pred CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 141 HENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
...|+|+|+.+......+.-+|+.||||+|||.+.++.+...+ ... ....++|.+||+++++|+
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~-~~~------~~~gi~~aLPT~Atan~m 347 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLI-DQG------LADSIIFALPTQATANAM 347 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHH-HhC------CCCeEEEECcHHHHHHHH
Confidence 4489999998865544566789999999999999877655433 221 145789999999999887
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-16 Score=177.23 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=113.3
Q ss_pred HHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--
Q 042373 134 ETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-- 211 (494)
Q Consensus 134 ~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-- 211 (494)
......+| .|.++|++++-++-.|..|+++||||||||+..-..+-..+.+ +-++++.+|.++|.+|.
T Consensus 111 ~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~---------~qrviYTsPIKALsNQKyr 180 (1041)
T COG4581 111 PPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD---------GQRVIYTSPIKALSNQKYR 180 (1041)
T ss_pred cHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc---------CCceEeccchhhhhhhHHH
Confidence 34456788 6999999999999999999999999999999988888777755 44699999999999997
Q ss_pred ------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhh
Q 042373 212 ------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI 261 (494)
Q Consensus 212 ------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l 261 (494)
.|-..|..++.++. ..+..+.+||+||+|.|-|..-....+.++-.+
T Consensus 181 dl~~~fgdv~~~vGL~TGDv~IN~~A~clvMTTEILRnMlyrg~---~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l 257 (1041)
T COG4581 181 DLLAKFGDVADMVGLMTGDVSINPDAPCLVMTTEILRNMLYRGS---ESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL 257 (1041)
T ss_pred HHHHHhhhhhhhccceecceeeCCCCceEEeeHHHHHHHhccCc---ccccccceEEEEeeeeccccccchhHHHHHHhc
Confidence 34466777777653 368899999999999999988788888889999
Q ss_pred cCCCcEEEecCCCChHHH
Q 042373 262 RPDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 262 ~~~~Q~ilfSAT~~~~v~ 279 (494)
|...|+++||||+|+..+
T Consensus 258 P~~v~~v~LSATv~N~~E 275 (1041)
T COG4581 258 PDHVRFVFLSATVPNAEE 275 (1041)
T ss_pred CCCCcEEEEeCCCCCHHH
Confidence 999999999999987643
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-15 Score=162.23 Aligned_cols=214 Identities=18% Similarity=0.212 Sum_probs=157.9
Q ss_pred CCCHHHHHH-HHhCCCCCCChhHHHHHHHHHcC------CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 127 GLTTKILET-FSKLNHENPVAIQAPASALIISG------LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 127 ~L~~~ll~~-l~~~g~~~ptpiQ~~aip~il~g------rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
.....++.. +..+.| ++|..|++++.-|... .+-++++.-|||||+..++.|+..+-. |-++.
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---------G~Q~A 315 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---------GYQAA 315 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---------CCeeE
Confidence 344555555 467888 7999999999999865 366999999999999999999998854 77999
Q ss_pred EEccchhHHHhhh---------------------hh---hHHHHHHHhcCcc-----------eecccceEEEEEcccch
Q 042373 200 VMAPTGELVRQQV---------------------RR---GRMIDLLCKNGVK-----------ITNLTRVTYLVLDEADR 244 (494)
Q Consensus 200 Il~PTreLa~Qi~---------------------TP---grl~dll~~~~~~-----------~~~l~~l~~lVlDEaD~ 244 (494)
.++||--||.|.. +. ..+...+..+... .+.++++.++|+||-||
T Consensus 316 LMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHR 395 (677)
T COG1200 316 LMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHR 395 (677)
T ss_pred EeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEEecccc
Confidence 9999999999981 11 1122223332221 24588999999999998
Q ss_pred hcccCChhHHHHHHHhhcC-CCcEEEecCCCChHHHHHHHh---------------------------------------
Q 042373 245 MFDMGFEPQITRIVQNIRP-DRQAVLFSPTFPPRVEILARK--------------------------------------- 284 (494)
Q Consensus 245 ml~~gf~~~i~~Il~~l~~-~~Q~ilfSAT~~~~v~~l~~~--------------------------------------- 284 (494)
. .-+-+..+..-.. .+.+++||||.-|....+.-.
T Consensus 396 F-----GV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei 470 (677)
T COG1200 396 F-----GVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEI 470 (677)
T ss_pred c-----cHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHH
Confidence 3 3444444554445 678899999966655544433
Q ss_pred ------------------------------------------------------------cCCccceeeccccccCCCCC
Q 042373 285 ------------------------------------------------------------TNVCNLSIANSVRARGLDEK 304 (494)
Q Consensus 285 ------------------------------------------------------------~g~~~ILVaTdv~~rGlDi~ 304 (494)
.|+++|||||.|...|+|+|
T Consensus 471 ~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVP 550 (677)
T COG1200 471 AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVP 550 (677)
T ss_pred HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCC
Confidence 78999999999999999999
Q ss_pred CceEEEecCCCCCHhHHHh----hhccCCCcceEEEEecccCHHHHHHHHHHHHh
Q 042373 305 ELELVINFDAPNDYEDYVH----HCCQSWLKSCAFRFISEENAIYATDLVKAFEL 355 (494)
Q Consensus 305 ~v~~VInyd~P~s~~~yvh----R~GRaGr~G~aitfv~~~~~~~~~~i~~~l~~ 355 (494)
+.++.|.+|.-.=--.-+| |+||.+....|+.++.+....-.+.-.+.+..
T Consensus 551 nATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~ 605 (677)
T COG1200 551 NATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRE 605 (677)
T ss_pred CCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHh
Confidence 9999888887653223333 88888889999999988765555555555554
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-16 Score=178.16 Aligned_cols=115 Identities=15% Similarity=0.202 Sum_probs=98.6
Q ss_pred ccCCCCHHHHHHHH-----hCCCCCC---ChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCC
Q 042373 124 RQTGLTTKILETFS-----KLNHENP---VAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDS 195 (494)
Q Consensus 124 ~~l~L~~~ll~~l~-----~~g~~~p---tpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~ 195 (494)
+.|++..++...+. .+||..| ||+|.|+||.++.++|+|+.++||+|||++|++|++..++. +
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------g 135 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------G 135 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------c
Confidence 56789999998887 6899999 99999999999999999999999999999999999988864 2
Q ss_pred CeEEEEccchhHHHhh-------------------------------------hhhhHH-HHHHHhcCccee----cccc
Q 042373 196 PVGLVMAPTGELVRQQ-------------------------------------VRRGRM-IDLLCKNGVKIT----NLTR 233 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi-------------------------------------~TPgrl-~dll~~~~~~~~----~l~~ 233 (494)
..++||+|||+||.|+ +||+|| .|+|..+..... -.+.
T Consensus 136 ~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~ 215 (970)
T PRK12899 136 KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRG 215 (970)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhccc
Confidence 2489999999999998 899999 999987532211 1246
Q ss_pred eEEEEEcccchhcc
Q 042373 234 VTYLVLDEADRMFD 247 (494)
Q Consensus 234 l~~lVlDEaD~ml~ 247 (494)
+.++||||||.||-
T Consensus 216 ~~~~IIDEADsmLi 229 (970)
T PRK12899 216 FYFAIIDEVDSILI 229 (970)
T ss_pred ccEEEEechhhhhh
Confidence 68999999999883
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-16 Score=166.82 Aligned_cols=170 Identities=16% Similarity=0.183 Sum_probs=121.7
Q ss_pred CCCChhHHHHHHHHHc----CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh----
Q 042373 142 ENPVAIQAPASALIIS----GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR---- 213 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~----grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T---- 213 (494)
..|.++|.+++..+.. ++..+++.|||+|||..++..+-. + +..+||||||++|+.|...
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~-~-----------~~~~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE-L-----------KRSTLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH-h-----------cCCEEEEECcHHHHHHHHHHHHH
Confidence 3699999999999998 899999999999999877664443 2 3349999999999999820
Q ss_pred -------hhHH----------------HHHHHhc-CcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEE
Q 042373 214 -------RGRM----------------IDLLCKN-GVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269 (494)
Q Consensus 214 -------Pgrl----------------~dll~~~-~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~il 269 (494)
.|.+ .+.+.+. .......++..+||+||||++....|. .+...+....-.++
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~----~~~~~~~~~~~~LG 178 (442)
T COG1061 103 FLLLNDEIGIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR----RILELLSAAYPRLG 178 (442)
T ss_pred hcCCccccceecCceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH----HHHHhhhcccceee
Confidence 0000 0111110 001112236889999999998865443 33333322222889
Q ss_pred ecCCCChHHH----HHHHh-------------------------------------------------------------
Q 042373 270 FSPTFPPRVE----ILARK------------------------------------------------------------- 284 (494)
Q Consensus 270 fSAT~~~~v~----~l~~~------------------------------------------------------------- 284 (494)
+|||++.... .+...
T Consensus 179 LTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (442)
T COG1061 179 LTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENE 258 (442)
T ss_pred eccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHH
Confidence 9999552220 00000
Q ss_pred -----------------------------------------------------------------------cCCccceee
Q 042373 285 -----------------------------------------------------------------------TNVCNLSIA 293 (494)
Q Consensus 285 -----------------------------------------------------------------------~g~~~ILVa 293 (494)
.|.+++||+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~ 338 (442)
T COG1061 259 ARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTGGIKVLVT 338 (442)
T ss_pred HHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 567999999
Q ss_pred ccccccCCCCCCceEEEecCCCCCHhHHHhhhcc
Q 042373 294 NSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ 327 (494)
Q Consensus 294 Tdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR 327 (494)
+.++..|+|+|+++++|......|...|+||+||
T Consensus 339 ~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR 372 (442)
T COG1061 339 VKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGR 372 (442)
T ss_pred eeeccceecCCCCcEEEEeCCCCcHHHHHHHhhh
Confidence 9999999999999999999999999999999999
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-16 Score=169.99 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=104.6
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----------
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------- 211 (494)
++.|.|..+|.++-++..|++.|.|.+|||.+.-..|...+.. .-++++-+|.++|.+|-
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---------kQRVIYTSPIKALSNQKYREl~~EF~DV 199 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---------KQRVIYTSPIKALSNQKYRELLEEFKDV 199 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---------cCeEEeeChhhhhcchhHHHHHHHhccc
Confidence 6899999999999999999999999999999988888888765 34799999999999996
Q ss_pred -----------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCC
Q 042373 212 -----------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274 (494)
Q Consensus 212 -----------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~ 274 (494)
.|...|..+|.+++. -++.+.+||+||+|.|-|....-..+.-+-.+|.+...+++|||+
T Consensus 200 GLMTGDVTInP~ASCLVMTTEILRsMLYRGSE---vmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 200 GLMTGDVTINPDASCLVMTTEILRSMLYRGSE---VMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATI 276 (1041)
T ss_pred ceeecceeeCCCCceeeeHHHHHHHHHhccch---HhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccC
Confidence 467788888887654 588999999999999998653333333334568889999999999
Q ss_pred ChHHH
Q 042373 275 PPRVE 279 (494)
Q Consensus 275 ~~~v~ 279 (494)
|+..+
T Consensus 277 PNA~q 281 (1041)
T KOG0948|consen 277 PNARQ 281 (1041)
T ss_pred CCHHH
Confidence 98764
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-15 Score=139.62 Aligned_cols=137 Identities=36% Similarity=0.486 Sum_probs=111.7
Q ss_pred hCCCCCCChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----
Q 042373 138 KLNHENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----- 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----- 211 (494)
..++..|+++|.+++..++.+ +.++++++||||||.+++.+++..+.... ...+||++||+.++.|+
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-------~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-------GKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-------CCcEEEEeCCHHHHHHHHHHHH
Confidence 457889999999999999999 99999999999999999999999886532 35799999999999887
Q ss_pred -----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHH
Q 042373 212 -----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITR 256 (494)
Q Consensus 212 -----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~ 256 (494)
+|++.+.+.+.... ....++.++|+||+|.+....+...+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~---~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 152 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL---LELSNVDLVILDEAHRLLDGGFGDQLEK 152 (201)
T ss_pred HHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC---cCHhHCCEEEEECHHHHhcCCcHHHHHH
Confidence 23333333333211 2455678999999999997678889999
Q ss_pred HHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 257 IVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 257 Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
++..+++..+++++|||.++.+...+..
T Consensus 153 ~~~~~~~~~~~v~~saT~~~~~~~~~~~ 180 (201)
T smart00487 153 LLKLLPKNVQLLLLSATPPEEIENLLEL 180 (201)
T ss_pred HHHhCCccceEEEEecCCchhHHHHHHH
Confidence 9998888999999999999888777655
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.5e-14 Score=161.46 Aligned_cols=54 Identities=9% Similarity=0.040 Sum_probs=46.8
Q ss_pred CCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEec
Q 042373 286 NVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFIS 339 (494)
Q Consensus 286 g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~ 339 (494)
+.++|||||++++||+|++.+++|||||+|.++..|+||+||.+| +|.+..++.
T Consensus 545 ~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~ 601 (956)
T PRK04914 545 DGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVP 601 (956)
T ss_pred CCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 469999999999999999999999999999999999999999655 554444443
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=168.27 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=40.0
Q ss_pred cceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC
Q 042373 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL 330 (494)
Q Consensus 289 ~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr 330 (494)
.|+|+++++.+|+|+|.|.+||.+..+.|...|+||+||+.|
T Consensus 758 ~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR 799 (1123)
T PRK11448 758 NIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATR 799 (1123)
T ss_pred eEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhcc
Confidence 589999999999999999999999999999999999999666
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-14 Score=160.39 Aligned_cols=199 Identities=18% Similarity=0.239 Sum_probs=148.9
Q ss_pred CCHHHHHHHH-hCCCCCCChhHHHHHHHHHc----C--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 128 LTTKILETFS-KLNHENPVAIQAPASALIIS----G--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 128 L~~~ll~~l~-~~g~~~ptpiQ~~aip~il~----g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
.+......+. .++|+ -||-|..||..+.+ + .|-++|+.-|-|||-+.+=.++..++. |.++.|
T Consensus 579 ~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---------GKQVAv 648 (1139)
T COG1197 579 PDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---------GKQVAV 648 (1139)
T ss_pred CChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---------CCeEEE
Confidence 3444444443 36674 59999999999874 3 489999999999999999888888865 789999
Q ss_pred EccchhHHHhh---------------------hhh---hHHHHHHHhcCc-----------ceecccceEEEEEcccchh
Q 042373 201 MAPTGELVRQQ---------------------VRR---GRMIDLLCKNGV-----------KITNLTRVTYLVLDEADRM 245 (494)
Q Consensus 201 l~PTreLa~Qi---------------------~TP---grl~dll~~~~~-----------~~~~l~~l~~lVlDEaD~m 245 (494)
||||--||+|. .|. ...+.-|..+.. +-+.+.++.+||+||=||
T Consensus 649 LVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqR- 727 (1139)
T COG1197 649 LVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQR- 727 (1139)
T ss_pred EcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechhh-
Confidence 99999999998 011 111122222221 124588999999999987
Q ss_pred cccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------------
Q 042373 246 FDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------------- 284 (494)
Q Consensus 246 l~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------------- 284 (494)
|.-.-..-++.++.+.-++-+|||.-|....++..
T Consensus 728 ----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~Rg 803 (1139)
T COG1197 728 ----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRG 803 (1139)
T ss_pred ----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcC
Confidence 34444556677788889999999977766666654
Q ss_pred -------------------------------------------------cCCccceeeccccccCCCCCCceEEEecCCC
Q 042373 285 -------------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAP 315 (494)
Q Consensus 285 -------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P 315 (494)
.|+++|||||.+..-|||||+++.+|..+.-
T Consensus 804 GQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD 883 (1139)
T COG1197 804 GQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERAD 883 (1139)
T ss_pred CEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccc
Confidence 8999999999999999999999998865544
Q ss_pred C-CHhHHHh---hhccCCCcceEEEEeccc
Q 042373 316 N-DYEDYVH---HCCQSWLKSCAFRFISEE 341 (494)
Q Consensus 316 ~-s~~~yvh---R~GRaGr~G~aitfv~~~ 341 (494)
. -..+.-| |+||+.+.+.||.++.+.
T Consensus 884 ~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 884 KFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred cccHHHHHHhccccCCccceEEEEEeecCc
Confidence 3 2334444 888888899999888764
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=154.06 Aligned_cols=94 Identities=21% Similarity=0.285 Sum_probs=77.2
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
+|. .|+++|...--++..|+ |+.++||+|||++|.+|++..++. |..++||+||++||.|.
T Consensus 79 lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~---------G~~V~VvTpn~yLA~qd~e~m~~l 146 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS---------GRGVHIVTVNDYLAKRDSQWMKPI 146 (896)
T ss_pred cCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc---------CCCEEEEcCCHHHHHHHHHHHHHH
Confidence 554 68888877666666665 899999999999999999987754 45699999999999997
Q ss_pred ------------------------------hhhhHH-HHHHHhcCcceecc-----cceEEEEEcccchhc
Q 042373 212 ------------------------------VRRGRM-IDLLCKNGVKITNL-----TRVTYLVLDEADRMF 246 (494)
Q Consensus 212 ------------------------------~TPgrl-~dll~~~~~~~~~l-----~~l~~lVlDEaD~ml 246 (494)
+||++| .|+|..+- ..++ +.+.|+||||||.||
T Consensus 147 ~~~lGLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~--~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 147 YEFLGLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNM--AFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred hcccCceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCC--ccchHhhhccccceEEeccHhhhh
Confidence 799999 99998641 1233 689999999999987
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.2e-14 Score=155.74 Aligned_cols=61 Identities=25% Similarity=0.290 Sum_probs=53.8
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+|. .|++.|..+--++..|+ |+...||+|||++..+|++..... |..+-|++||--||.|-
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~---------G~~v~vvT~neyLA~Rd 137 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT---------GKGVHVVTVNEYLSSRD 137 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc---------CCCeEEEeccHHHHHhh
Confidence 565 79999998887777887 999999999999999999988865 66899999999999986
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-13 Score=149.52 Aligned_cols=216 Identities=16% Similarity=0.106 Sum_probs=157.8
Q ss_pred CCCHHHHHHHHhCCCCCCChhHHHHH--HHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc
Q 042373 127 GLTTKILETFSKLNHENPVAIQAPAS--ALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT 204 (494)
Q Consensus 127 ~L~~~ll~~l~~~g~~~ptpiQ~~ai--p~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT 204 (494)
+++....-..+..|..+.+.+|..|+ |.++.++|+|..+||+.|||++.-+-|+..++.. +..++.+.|-
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--------rr~~llilp~ 278 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--------RRNVLLILPY 278 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--------hhceeEecce
Confidence 33333444456789999999999985 7788999999999999999999999999888754 3346666665
Q ss_pred hhHHHhh-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccC
Q 042373 205 GELVRQQ-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG 249 (494)
Q Consensus 205 reLa~Qi-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~g 249 (494)
..-+..- ||-++-..+++. -...-.+..+.+|||||.|.+.+.+
T Consensus 279 vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~-lie~g~~~~~g~vvVdElhmi~d~~ 357 (1008)
T KOG0950|consen 279 VSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINS-LIEQGRLDFLGMVVVDELHMIGDKG 357 (1008)
T ss_pred eehhHHHHhhhhhhccccCCcchhhcccCCCCCcccceeeeeeehHhhHhHHHH-HHhcCCccccCcEEEeeeeeeeccc
Confidence 4443322 333322211111 0111247789999999999999999
Q ss_pred ChhHHHHHHHhh-----cCCCcEEEecCCCChH--HHHHHHh--------------------------------------
Q 042373 250 FEPQITRIVQNI-----RPDRQAVLFSPTFPPR--VEILARK-------------------------------------- 284 (494)
Q Consensus 250 f~~~i~~Il~~l-----~~~~Q~ilfSAT~~~~--v~~l~~~-------------------------------------- 284 (494)
....++.++..+ ....|+|++|||+|+- ++.+...
T Consensus 358 rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~ 437 (1008)
T KOG0950|consen 358 RGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLY 437 (1008)
T ss_pred cchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhh
Confidence 888888777655 2346799999998753 2222221
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 438 ~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl 517 (1008)
T KOG0950|consen 438 SSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVL 517 (1008)
T ss_pred hhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHH
Confidence
Q ss_pred ----------------------------cCCccceeeccccccCCCCCCceEEEecCC----CCCHhHHHhhhccCCCc-
Q 042373 285 ----------------------------TNVCNLSIANSVRARGLDEKELELVINFDA----PNDYEDYVHHCCQSWLK- 331 (494)
Q Consensus 285 ----------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~----P~s~~~yvhR~GRaGr~- 331 (494)
.|.+.|++||+.++.|++.|..+++|-+-. +.+..+|.||+|||||.
T Consensus 518 ~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~g 597 (1008)
T KOG0950|consen 518 AKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTG 597 (1008)
T ss_pred heeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcc
Confidence 789999999999999999999888886432 35788999999999986
Q ss_pred ----ceEEEEecccCHHHHHHHHH
Q 042373 332 ----SCAFRFISEENAIYATDLVK 351 (494)
Q Consensus 332 ----G~aitfv~~~~~~~~~~i~~ 351 (494)
|.+|+++.+.+......+++
T Consensus 598 idT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 598 IDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred cccCcceEEEeeccchhHHHHHHh
Confidence 56999999988877765554
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-13 Score=150.76 Aligned_cols=178 Identities=16% Similarity=0.177 Sum_probs=124.6
Q ss_pred HHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---------------------
Q 042373 153 ALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--------------------- 211 (494)
Q Consensus 153 p~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--------------------- 211 (494)
.++-...=+|++|+||||||...-.-+++..+. .+....+.=|.|--|..+
T Consensus 60 ~ai~~~~vvii~getGsGKTTqlP~~lle~g~~--------~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iR 131 (845)
T COG1643 60 KAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG--------IAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIR 131 (845)
T ss_pred HHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc--------cCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEE
Confidence 345556668899999999998554444443321 123444555776444443
Q ss_pred -------------hhhhHHHHHHHhcCcceecccceEEEEEcccch-hcccCC-hhHHHHHHHhhcCCCcEEEecCCCCh
Q 042373 212 -------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADR-MFDMGF-EPQITRIVQNIRPDRQAVLFSPTFPP 276 (494)
Q Consensus 212 -------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~-ml~~gf-~~~i~~Il~~l~~~~Q~ilfSAT~~~ 276 (494)
.|.|.|...+.... .|+.+++||+||||. -++..| .-.+..++...+++-.+|++|||+..
T Consensus 132 fe~~~s~~Trik~mTdGiLlrei~~D~----~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~ 207 (845)
T COG1643 132 FESKVSPRTRIKVMTDGILLREIQNDP----LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDA 207 (845)
T ss_pred eeccCCCCceeEEeccHHHHHHHhhCc----ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCH
Confidence 67888888887643 489999999999996 232222 22445556667778899999999764
Q ss_pred H-HHHHHHh-----------------------------------------------------------------------
Q 042373 277 R-VEILARK----------------------------------------------------------------------- 284 (494)
Q Consensus 277 ~-v~~l~~~----------------------------------------------------------------------- 284 (494)
+ ...+...
T Consensus 208 ~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~ 287 (845)
T COG1643 208 ERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDD 287 (845)
T ss_pred HHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCC
Confidence 3 1111111
Q ss_pred -----------------------cCCccceeeccccccCCCCCCceEEEecCC------------------CCCHhHHHh
Q 042373 285 -----------------------TNVCNLSIANSVRARGLDEKELELVINFDA------------------PNDYEDYVH 323 (494)
Q Consensus 285 -----------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~------------------P~s~~~yvh 323 (494)
.++-+|++||+++.-+|-|++|.+||.-++ |-|-.+.-|
T Consensus 288 ~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~Q 367 (845)
T COG1643 288 LEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQ 367 (845)
T ss_pred cEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhh
Confidence 344559999999999999999999997443 446778889
Q ss_pred hhccCCC--cceEEEEecccC
Q 042373 324 HCCQSWL--KSCAFRFISEEN 342 (494)
Q Consensus 324 R~GRaGr--~G~aitfv~~~~ 342 (494)
|.||||| .|.||-++++++
T Consensus 368 RaGRAGR~~pGicyRLyse~~ 388 (845)
T COG1643 368 RAGRAGRTGPGICYRLYSEED 388 (845)
T ss_pred hccccccCCCceEEEecCHHH
Confidence 9999998 799999999843
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-12 Score=128.96 Aligned_cols=189 Identities=14% Similarity=0.158 Sum_probs=132.7
Q ss_pred CCChhHHHHHHHHH----cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHH
Q 042373 143 NPVAIQAPASALII----SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMI 218 (494)
Q Consensus 143 ~ptpiQ~~aip~il----~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~ 218 (494)
++||.|..+-..++ +.+|+|++|-||+|||- .+.+.++..+++ |..+.|.+|....|..+.+ ||.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTE-Mif~~i~~al~~--------G~~vciASPRvDVclEl~~--Rlk 165 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTE-MIFQGIEQALNQ--------GGRVCIASPRVDVCLELYP--RLK 165 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchh-hhHHHHHHHHhc--------CCeEEEecCcccchHHHHH--HHH
Confidence 78999988766554 56899999999999996 455666666654 7789999999888887643 444
Q ss_pred HHHHhcCcceec----------------------ccceEEEEEcccchhcccCChhHHHHHH-HhhcCCCcEEEecCCCC
Q 042373 219 DLLCKNGVKITN----------------------LTRVTYLVLDEADRMFDMGFEPQITRIV-QNIRPDRQAVLFSPTFP 275 (494)
Q Consensus 219 dll~~~~~~~~~----------------------l~~l~~lVlDEaD~ml~~gf~~~i~~Il-~~l~~~~Q~ilfSAT~~ 275 (494)
+.+..-....+. -..++++|+||+|..--.. -+.+..-+ +..+...-+|++|||.+
T Consensus 166 ~aF~~~~I~~Lyg~S~~~fr~plvVaTtHQLlrFk~aFD~liIDEVDAFP~~~-d~~L~~Av~~ark~~g~~IylTATp~ 244 (441)
T COG4098 166 QAFSNCDIDLLYGDSDSYFRAPLVVATTHQLLRFKQAFDLLIIDEVDAFPFSD-DQSLQYAVKKARKKEGATIYLTATPT 244 (441)
T ss_pred HhhccCCeeeEecCCchhccccEEEEehHHHHHHHhhccEEEEeccccccccC-CHHHHHHHHHhhcccCceEEEecCCh
Confidence 444322111100 1357899999999765222 23333333 33456678999999988
Q ss_pred hHHHHHHHh-----------------------------------------------------------------------
Q 042373 276 PRVEILARK----------------------------------------------------------------------- 284 (494)
Q Consensus 276 ~~v~~l~~~----------------------------------------------------------------------- 284 (494)
+..+.-+..
T Consensus 245 k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~ 324 (441)
T COG4098 245 KKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAA 324 (441)
T ss_pred HHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHH
Confidence 777655443
Q ss_pred ----------------------------cCCccceeeccccccCCCCCCceEEE-ecCCC-CCHhHHHhhhccCCC----
Q 042373 285 ----------------------------TNVCNLSIANSVRARGLDEKELELVI-NFDAP-NDYEDYVHHCCQSWL---- 330 (494)
Q Consensus 285 ----------------------------~g~~~ILVaTdv~~rGlDi~~v~~VI-nyd~P-~s~~~yvhR~GRaGr---- 330 (494)
+|+..+||+|.++.||+-+|+|+++| +-.-+ -+-...||-.||.||
T Consensus 325 lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~ 404 (441)
T COG4098 325 LKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLER 404 (441)
T ss_pred HHhhCCccceeeeeccCccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcC
Confidence 89999999999999999999999855 33222 367788998888777
Q ss_pred -cceEEEEecccCH
Q 042373 331 -KSCAFRFISEENA 343 (494)
Q Consensus 331 -~G~aitfv~~~~~ 343 (494)
.|..+.|-.....
T Consensus 405 PtGdv~FFH~G~sk 418 (441)
T COG4098 405 PTGDVLFFHYGKSK 418 (441)
T ss_pred CCCcEEEEeccchH
Confidence 5777766544443
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-13 Score=149.98 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=58.0
Q ss_pred cCCccceeeccccccCCCCCCceEEEecC-----CCCCHhHHHhhhccCCC--cceEEEEecccCHHHHHHHHH
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFD-----APNDYEDYVHHCCQSWL--KSCAFRFISEENAIYATDLVK 351 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd-----~P~s~~~yvhR~GRaGr--~G~aitfv~~~~~~~~~~i~~ 351 (494)
.|.+.|||||++++||+|+|++++||++| +|.+..+|+||+||+|| .|.+++|++..+......|.+
T Consensus 490 ~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 490 LGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred cCCceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHHHH
Confidence 57889999999999999999999999998 89999999999999887 789999999876544444443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-13 Score=149.66 Aligned_cols=96 Identities=23% Similarity=0.289 Sum_probs=77.4
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
+|. .|+++|....-++..|+ |+.++||+|||+++.+|++-..+. |..+-|++||++||.|.
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT---------GKGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc---------CCCEEEEecCHHHHHHHHHHHHHH
Confidence 565 79999998887777775 999999999999999999744432 33577999999999997
Q ss_pred ------------------------------hhhhHH-HHHHHhcCc---ceecccceEEEEEcccchhc
Q 042373 212 ------------------------------VRRGRM-IDLLCKNGV---KITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 212 ------------------------------~TPgrl-~dll~~~~~---~~~~l~~l~~lVlDEaD~ml 246 (494)
+||++| .|+|..+-. ....++.+.|+||||||.|+
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 799999 899875421 11246889999999999977
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.37 E-value=9e-12 Score=130.95 Aligned_cols=83 Identities=12% Similarity=0.132 Sum_probs=64.1
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCC-----CCCHhHHHhhhccCCC--cceEEEEeccc---------CHHHHHH
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDA-----PNDYEDYVHHCCQSWL--KSCAFRFISEE---------NAIYATD 348 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~-----P~s~~~yvhR~GRaGr--~G~aitfv~~~---------~~~~~~~ 348 (494)
.|.++|||.-+++-.|||+|.|.+|..+|. ..|-.+.||-+|||-| .|.+|.+.+.- +...-+.
T Consensus 494 ~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM~~Ai~ET~RRR~ 573 (663)
T COG0556 494 LGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAIDETERRRE 573 (663)
T ss_pred cCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCeEEEEchhhhHHHHHHHHHHHHHHH
Confidence 899999999999999999999999998874 5788999999999544 79988776542 2233444
Q ss_pred HHHHHHhccCcchHHHHHH
Q 042373 349 LVKAFELSELVVRDDLKAV 367 (494)
Q Consensus 349 i~~~l~~~~~~vp~~l~~~ 367 (494)
+...++.....+|..+.+-
T Consensus 574 iQ~~yN~~hgItP~ti~K~ 592 (663)
T COG0556 574 IQMAYNEEHGITPQTIKKK 592 (663)
T ss_pred HHHHHHHhcCCCchhhhhh
Confidence 5555666677778666443
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=136.97 Aligned_cols=126 Identities=20% Similarity=0.168 Sum_probs=90.4
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----------
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------- 211 (494)
.|..+|...+-.+-.+..++++|||.+|||.+-...|=.++.... ...+|+++||.+|+.|+
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD-------~~VVIyvaPtKaLVnQvsa~VyaRF~~~ 583 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESD-------SDVVIYVAPTKALVNQVSANVYARFDTK 583 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcC-------CCEEEEecchHHHhhhhhHHHHHhhccC
Confidence 688999999999999999999999999999876655544443321 55799999999999998
Q ss_pred ---------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCC
Q 042373 212 ---------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPD 264 (494)
Q Consensus 212 ---------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~ 264 (494)
+-|..+-.+|...........+++|+|+||+|.+-.+.-.-..+.++..+ .
T Consensus 584 t~~rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~ 661 (1330)
T KOG0949|consen 584 TFLRGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--P 661 (1330)
T ss_pred ccccchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--C
Confidence 22444444444321122235789999999999987654222333344433 5
Q ss_pred CcEEEecCCCChH
Q 042373 265 RQAVLFSPTFPPR 277 (494)
Q Consensus 265 ~Q~ilfSAT~~~~ 277 (494)
+.++.+|||+.+.
T Consensus 662 CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 662 CPFLVLSATIGNP 674 (1330)
T ss_pred CCeeEEecccCCH
Confidence 7899999998653
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-11 Score=131.83 Aligned_cols=181 Identities=16% Similarity=0.194 Sum_probs=120.8
Q ss_pred HHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------------------
Q 042373 150 PASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------------ 211 (494)
Q Consensus 150 ~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------------ 211 (494)
+.+..+-..+-+|++++||||||.- +| +.+.+..-. . ....-+.-|.|--|..+
T Consensus 58 ~il~~ve~nqvlIviGeTGsGKSTQ--ip--QyL~eaG~~---~-~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY 129 (674)
T KOG0922|consen 58 QILYAVEDNQVLIVIGETGSGKSTQ--IP--QYLAEAGFA---S-SGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGY 129 (674)
T ss_pred HHHHHHHHCCEEEEEcCCCCCcccc--Hh--HHHHhcccc---c-CCcEEeecCchHHHHHHHHHHHHHhCCCcCceeee
Confidence 3455556677889999999999973 33 223332111 1 12244555777655554
Q ss_pred ----------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhc-ccC-ChhHHHHHHHhhcCCCcEEEecCC
Q 042373 212 ----------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMF-DMG-FEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 212 ----------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml-~~g-f~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
.|-|-|+..+.... .|+..+++||||||.=. ... ..-.+.+|++. +++-.+|++|||
T Consensus 130 ~IRFed~ts~~TrikymTDG~LLRE~l~Dp----~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~LklIimSAT 204 (674)
T KOG0922|consen 130 TIRFEDSTSKDTRIKYMTDGMLLREILKDP----LLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLKLIIMSAT 204 (674)
T ss_pred EEEecccCCCceeEEEecchHHHHHHhcCC----ccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCceEEEEeee
Confidence 46677766655432 58999999999999611 000 11123333332 456789999999
Q ss_pred CChHHH-HHHHh--------------------------------------------------------------------
Q 042373 274 FPPRVE-ILARK-------------------------------------------------------------------- 284 (494)
Q Consensus 274 ~~~~v~-~l~~~-------------------------------------------------------------------- 284 (494)
+..+.- .+...
T Consensus 205 lda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~ 284 (674)
T KOG0922|consen 205 LDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKS 284 (674)
T ss_pred ecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 753221 11110
Q ss_pred -----------------------------cCCccceeeccccccCCCCCCceEEEecCC------------------CCC
Q 042373 285 -----------------------------TNVCNLSIANSVRARGLDEKELELVINFDA------------------PND 317 (494)
Q Consensus 285 -----------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~------------------P~s 317 (494)
.|..+|+++|+++.-.|-|++|.+||.-++ |-|
T Consensus 285 ~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~IS 364 (674)
T KOG0922|consen 285 LPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPIS 364 (674)
T ss_pred ccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEech
Confidence 578889999999999999999999997543 557
Q ss_pred HhHHHhhhccCCC--cceEEEEecccCH
Q 042373 318 YEDYVHHCCQSWL--KSCAFRFISEENA 343 (494)
Q Consensus 318 ~~~yvhR~GRaGr--~G~aitfv~~~~~ 343 (494)
..+-.||.||||| .|.||.++++++.
T Consensus 365 kasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 365 KASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred HHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 8888999999998 7899999998754
|
|
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-11 Score=128.32 Aligned_cols=210 Identities=20% Similarity=0.200 Sum_probs=160.5
Q ss_pred CCCCChhHHHHHHHHHcCCCEEEEcCC-CCCc--hhhhHHHHHHHHHcCCC----------------------CCCCCCC
Q 042373 141 HENPVAIQAPASALIISGLDSVAITET-GSGK--TLAFLLPMLRHIWEQPP----------------------VVPGDDS 195 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il~grdvi~~a~T-GSGK--Tlafllpil~~l~~~~~----------------------~~~~~~~ 195 (494)
=..+|+.|.+.+-.+.+.+|++..-.| +.|+ +-.|.+-+|.|++..+. .++|...
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 356899999999999999999876333 3455 56788999999874211 1345568
Q ss_pred CeEEEEccchhHHHhh----------------------------------------------------------------
Q 042373 196 PVGLVMAPTGELVRQQ---------------------------------------------------------------- 211 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi---------------------------------------------------------------- 211 (494)
|++|||||+|+-|..+
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 9999999999999887
Q ss_pred -----------------hhhhHHHHHHHhcCcce---ecccceEEEEEcccchhcccCChhHHHHHHHhhcCC-------
Q 042373 212 -----------------VRRGRMIDLLCKNGVKI---TNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPD------- 264 (494)
Q Consensus 212 -----------------~TPgrl~dll~~~~~~~---~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~------- 264 (494)
|.|-.|..++.+.+.+. --|+.|.++|+|.||.|+ |+.|..+..|+.++...
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l-~QNwEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML-MQNWEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH-HhhHHHHHHHHHHhhcCcccccCC
Confidence 67777777776332222 237899999999999888 67789999999887421
Q ss_pred -----------------CcEEEecCCCChHHHHHHHh-------------------------------------------
Q 042373 265 -----------------RQAVLFSPTFPPRVEILARK------------------------------------------- 284 (494)
Q Consensus 265 -----------------~Q~ilfSAT~~~~v~~l~~~------------------------------------------- 284 (494)
||+++||+-..+.+..+...
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 69999999877776665543
Q ss_pred -------------------------------------------------------------------cCCccceeecccc
Q 042373 285 -------------------------------------------------------------------TNVCNLSIANSVR 297 (494)
Q Consensus 285 -------------------------------------------------------------------~g~~~ILVaTdv~ 297 (494)
.|...+|+.|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 7889999999876
Q ss_pred --ccCCCCCCceEEEecCCCCCHhHHHh---hhccCCCc-------ceEEEEecccCHHHHHHHHH
Q 042373 298 --ARGLDEKELELVINFDAPNDYEDYVH---HCCQSWLK-------SCAFRFISEENAIYATDLVK 351 (494)
Q Consensus 298 --~rGlDi~~v~~VInyd~P~s~~~yvh---R~GRaGr~-------G~aitfv~~~~~~~~~~i~~ 351 (494)
.|..+|.+|..||.|.+|+++..|.- +.+|+... -.|..+++..+.-.+..|+-
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 57899999999999999999887754 66673333 35777888887766665553
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-11 Score=135.09 Aligned_cols=97 Identities=22% Similarity=0.253 Sum_probs=76.3
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
+|. .|+++|...--.+..|+ |+.++||.|||++|.+|++.+.+. |..+.||+||++||.|.
T Consensus 79 lgm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~---------g~~VhIvT~ndyLA~RD~e~m~~l 146 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALT---------GKGVHVITVNDYLARRDAENNRPL 146 (908)
T ss_pred hCC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhc---------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 555 68888886655555554 899999999999999999987764 45599999999999997
Q ss_pred ------------------------------hhhhHH-HHHHHhc-Ccc--eecccceEEEEEcccchhcc
Q 042373 212 ------------------------------VRRGRM-IDLLCKN-GVK--ITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 212 ------------------------------~TPgrl-~dll~~~-~~~--~~~l~~l~~lVlDEaD~ml~ 247 (494)
+||++| .|+|..+ ... -.-.+.+.++||||+|.||-
T Consensus 147 ~~~lGlsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 147 FEFLGLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred HHhcCCeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 799998 8888764 110 11237889999999999873
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.5e-12 Score=115.81 Aligned_cols=116 Identities=20% Similarity=0.112 Sum_probs=81.2
Q ss_pred CCChhHHHHHHHHHc-------CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----
Q 042373 143 NPVAIQAPASALIIS-------GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~-------grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---- 211 (494)
+|.+.|.+++-.+.. .+.+++.++||||||.+++..+.+.. . .+||++|+..|+.|.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-----------~-~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-----------R-KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-----------C-EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-----------c-ceeEecCHHHHHHHHHHHH
Confidence 578999999999984 68999999999999999886555443 2 799999999999997
Q ss_pred ----------------------------------------------hhhhHHHHHHHhcCc--------ceecccceEEE
Q 042373 212 ----------------------------------------------VRRGRMIDLLCKNGV--------KITNLTRVTYL 237 (494)
Q Consensus 212 ----------------------------------------------~TPgrl~dll~~~~~--------~~~~l~~l~~l 237 (494)
.|...+......... .........+|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 233334333332110 01223467899
Q ss_pred EEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCC
Q 042373 238 VLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFP 275 (494)
Q Consensus 238 VlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~ 275 (494)
|+||||++....- ...++. .+...+|+||||+.
T Consensus 151 I~DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 151 IIDEAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred EEehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 9999999875431 344444 46777899999975
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-11 Score=130.88 Aligned_cols=182 Identities=17% Similarity=0.183 Sum_probs=120.0
Q ss_pred CChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------------
Q 042373 144 PVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------ 211 (494)
Q Consensus 144 ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------ 211 (494)
-+..+.+.+..|-.++=+|+++.||||||.-. -+.++... ... ....-+--|.|.-|..+
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTTQl----~QyL~edG---Y~~-~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTTQL----AQYLYEDG---YAD-NGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchhhh----HHHHHhcc---ccc-CCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 34445555555666677888999999999742 23333321 112 22333445888777665
Q ss_pred ----------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHh---hcCCCc
Q 042373 212 ----------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQN---IRPDRQ 266 (494)
Q Consensus 212 ----------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~---l~~~~Q 266 (494)
.|-|.|+.-... -..|.+.+.||+||||.=.- ..+.+.-|++. -+.+..
T Consensus 429 G~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~----d~~L~kYSviImDEAHERsl--NtDilfGllk~~larRrdlK 502 (1042)
T KOG0924|consen 429 GDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLK----DRDLDKYSVIIMDEAHERSL--NTDILFGLLKKVLARRRDLK 502 (1042)
T ss_pred ccccceEEEeeecCCCceeEEEeccchHHHHHhh----hhhhhheeEEEechhhhccc--chHHHHHHHHHHHHhhccce
Confidence 344544432222 23588999999999996221 11222223222 245778
Q ss_pred EEEecCCCChHHHHHHHh--------------------------------------------------------------
Q 042373 267 AVLFSPTFPPRVEILARK-------------------------------------------------------------- 284 (494)
Q Consensus 267 ~ilfSAT~~~~v~~l~~~-------------------------------------------------------------- 284 (494)
+|..||||... +++..
T Consensus 503 liVtSATm~a~--kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~ 580 (1042)
T KOG0924|consen 503 LIVTSATMDAQ--KFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTC 580 (1042)
T ss_pred EEEeeccccHH--HHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHH
Confidence 99999998532 23222
Q ss_pred ----------------------------------------cCCccceeeccccccCCCCCCceEEEecCC----------
Q 042373 285 ----------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDA---------- 314 (494)
Q Consensus 285 ----------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~---------- 314 (494)
.|..+++|||++|.-.|-|+++.+||..++
T Consensus 581 ~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~ 660 (1042)
T KOG0924|consen 581 DIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRI 660 (1042)
T ss_pred HHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeeccccc
Confidence 677889999999999999999999997543
Q ss_pred --------CCCHhHHHhhhccCCC--cceEEEEeccc
Q 042373 315 --------PNDYEDYVHHCCQSWL--KSCAFRFISEE 341 (494)
Q Consensus 315 --------P~s~~~yvhR~GRaGr--~G~aitfv~~~ 341 (494)
|-|-..--||.||||| .|.||.++++.
T Consensus 661 G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 661 GMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTED 697 (1042)
T ss_pred ccceeEEEechhccchhhccccCCCCCcceeeehhhh
Confidence 5566677899999998 68999999874
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-10 Score=127.18 Aligned_cols=131 Identities=20% Similarity=0.135 Sum_probs=87.6
Q ss_pred CCCChhHHHHHHHHHcC----CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------
Q 042373 142 ENPVAIQAPASALIISG----LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~g----rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------ 211 (494)
..+++-|+.++..|... +-.++.+.||||||-+|+-.+-..+.. |..+|||+|-..|--|+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---------GkqvLvLVPEI~Ltpq~~~rf~~ 267 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---------GKQVLVLVPEIALTPQLLARFKA 267 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---------CCEEEEEeccccchHHHHHHHHH
Confidence 46788999999999766 678999999999999988766555533 77999999999999998
Q ss_pred ------------hhhh-HHHHHH--HhcCcc---------eecccceEEEEEcccchhcc---cCCh---hHHHHHHHhh
Q 042373 212 ------------VRRG-RMIDLL--CKNGVK---------ITNLTRVTYLVLDEADRMFD---MGFE---PQITRIVQNI 261 (494)
Q Consensus 212 ------------~TPg-rl~dll--~~~~~~---------~~~l~~l~~lVlDEaD~ml~---~gf~---~~i~~Il~~l 261 (494)
.+++ |..... .++..+ +..|.++.++||||=|--.- .+.+ .++-.... -
T Consensus 268 rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra-~ 346 (730)
T COG1198 268 RFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRA-K 346 (730)
T ss_pred HhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHH-H
Confidence 1222 222222 222221 23488999999999985331 1222 22222222 2
Q ss_pred cCCCcEEEecCCCChHHHHHH
Q 042373 262 RPDRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 262 ~~~~Q~ilfSAT~~~~v~~l~ 282 (494)
..+.++||-|||.+-+-...+
T Consensus 347 ~~~~pvvLgSATPSLES~~~~ 367 (730)
T COG1198 347 KENAPVVLGSATPSLESYANA 367 (730)
T ss_pred HhCCCEEEecCCCCHHHHHhh
Confidence 357889999999665544444
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.7e-11 Score=134.42 Aligned_cols=188 Identities=15% Similarity=0.156 Sum_probs=135.4
Q ss_pred ChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------------
Q 042373 145 VAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------- 211 (494)
Q Consensus 145 tpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------- 211 (494)
+..+.+.+..|.+.+-+++.+.||+|||.-----++....... .....++--|.|--|..+
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~------~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG------AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC------CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 4456667777888888999999999999866555666655432 123344455876655554
Q ss_pred ---------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchh-cccCChhHHHHHHHhhcCCCcEEE
Q 042373 212 ---------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRM-FDMGFEPQITRIVQNIRPDRQAVL 269 (494)
Q Consensus 212 ---------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~m-l~~gf~~~i~~Il~~l~~~~Q~il 269 (494)
||-|.|++.|... ..+..++++|+||+|.= .+..|.--+.+.+-..+++.++|+
T Consensus 249 ~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~----~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvIL 324 (924)
T KOG0920|consen 249 EEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSD----PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVIL 324 (924)
T ss_pred CeeeEEEeeecccCCceeEEEecHHHHHHHhccC----cccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEE
Confidence 8899999888763 36899999999999962 233444444444444568999999
Q ss_pred ecCCCChHHHHHHHh-----------------------------------------------------------------
Q 042373 270 FSPTFPPRVEILARK----------------------------------------------------------------- 284 (494)
Q Consensus 270 fSAT~~~~v~~l~~~----------------------------------------------------------------- 284 (494)
+|||+..+.-.....
T Consensus 325 MSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li 404 (924)
T KOG0920|consen 325 MSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLI 404 (924)
T ss_pred eeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHH
Confidence 999975322110000
Q ss_pred ---------------------------------------------------------------cCCccceeeccccccCC
Q 042373 285 ---------------------------------------------------------------TNVCNLSIANSVRARGL 301 (494)
Q Consensus 285 ---------------------------------------------------------------~g~~~ILVaTdv~~rGl 301 (494)
.|..+|+++|++|+-.|
T Consensus 405 ~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSI 484 (924)
T KOG0920|consen 405 EYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSI 484 (924)
T ss_pred HhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcc
Confidence 67889999999999999
Q ss_pred CCCCceEEEe--------cCCCCC----------HhHHHhhhccCCC--cceEEEEecccC
Q 042373 302 DEKELELVIN--------FDAPND----------YEDYVHHCCQSWL--KSCAFRFISEEN 342 (494)
Q Consensus 302 Di~~v~~VIn--------yd~P~s----------~~~yvhR~GRaGr--~G~aitfv~~~~ 342 (494)
-|++|-+||+ ||.-.+ ...-.||.||||| .|.||.+++...
T Consensus 485 TIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 485 TIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSR 545 (924)
T ss_pred cccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhh
Confidence 9999999997 554333 3344699999998 899999999753
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-11 Score=105.10 Aligned_cols=106 Identities=39% Similarity=0.500 Sum_probs=76.5
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---------------------------
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--------------------------- 211 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--------------------------- 211 (494)
+++++.++||+|||..++..+........ ..+++|++|++.|+.|.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~-------~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLK-------GGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhccc-------CCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH
Confidence 47899999999999999988888765421 56899999999999986
Q ss_pred -----------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCC
Q 042373 212 -----------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274 (494)
Q Consensus 212 -----------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~ 274 (494)
+|+..+...+.... .....+.++|+||+|.+....+...............+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~---~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLK---LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCC---cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 23343433333211 1244788999999999987665444323344456778999999995
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.9e-11 Score=134.94 Aligned_cols=193 Identities=20% Similarity=0.233 Sum_probs=134.5
Q ss_pred CCChhHHHHHHHHHcC---C-CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh-----
Q 042373 143 NPVAIQAPASALIISG---L-DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR----- 213 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g---r-dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T----- 213 (494)
.+.+.|..++-.++.. . .+++.||||+|||.+.+.+.+..+.... ...++.+++.|+|.+..++.-
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~-----~~~~r~i~vlP~~t~ie~~~~r~~~~ 269 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKI-----KLKSRVIYVLPFRTIIEDMYRRAKEI 269 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccc-----cccceEEEEccHHHHHHHHHHHHHhh
Confidence 3488999999888855 4 7889999999999999999998876520 127799999999999998800
Q ss_pred -----------h----------------------------------hHHHHHHH--hcCcceecc--cceEEEEEcccch
Q 042373 214 -----------R----------------------------------GRMIDLLC--KNGVKITNL--TRVTYLVLDEADR 244 (494)
Q Consensus 214 -----------P----------------------------------grl~dll~--~~~~~~~~l--~~l~~lVlDEaD~ 244 (494)
. ....+++. .+..+...+ =..+.+||||+|.
T Consensus 270 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 270 FGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred hcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 0 00011111 000000001 1236899999998
Q ss_pred hcccCChhHHHHHHHhhc-CCCcEEEecCCCChHHHHHHHh---------------------------------------
Q 042373 245 MFDMGFEPQITRIVQNIR-PDRQAVLFSPTFPPRVEILARK--------------------------------------- 284 (494)
Q Consensus 245 ml~~gf~~~i~~Il~~l~-~~~Q~ilfSAT~~~~v~~l~~~--------------------------------------- 284 (494)
+.+......+..++..+. .+..+|++|||+|+........
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 429 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEEL 429 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhh
Confidence 887644445555555543 5788999999999988766654
Q ss_pred --------------------------------------------------------------cCCccceeeccccccCCC
Q 042373 285 --------------------------------------------------------------TNVCNLSIANSVRARGLD 302 (494)
Q Consensus 285 --------------------------------------------------------------~g~~~ILVaTdv~~rGlD 302 (494)
.+...|+|||.|..-|+|
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEec
Confidence 267789999999999999
Q ss_pred CCCceEEEecCCCCCHhHHHhhhccCCC-----cceEEEEecccCH
Q 042373 303 EKELELVINFDAPNDYEDYVHHCCQSWL-----KSCAFRFISEENA 343 (494)
Q Consensus 303 i~~v~~VInyd~P~s~~~yvhR~GRaGr-----~G~aitfv~~~~~ 343 (494)
+. ++++|- -+..+...|||+||..| .|..+.+......
T Consensus 510 id-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 510 ID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred cc-cCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEeecccCC
Confidence 95 677763 35668899999999444 4456666654433
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.8e-11 Score=127.17 Aligned_cols=180 Identities=16% Similarity=0.191 Sum_probs=119.6
Q ss_pred HHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------------------
Q 042373 150 PASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------------ 211 (494)
Q Consensus 150 ~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------------ 211 (494)
+.+.++-..+=+|+.|.||||||. .+|-. +.+..-. ..|.+.-+--|.|--|..+
T Consensus 272 ell~av~e~QVLiI~GeTGSGKTT--QiPQy--L~EaGyt---k~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGY 344 (902)
T KOG0923|consen 272 ELLKAVKEHQVLIIVGETGSGKTT--QIPQY--LYEAGYT---KGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGY 344 (902)
T ss_pred HHHHHHHhCcEEEEEcCCCCCccc--cccHH--HHhcccc---cCCceEeecCcchHHHHHHHHHHHHHhCcccccccce
Confidence 344455566678888999999998 34433 3332211 1133344555888877776
Q ss_pred ----------------hhhhHHHHHHHhcCcceecccceEEEEEcccchh-cccC-ChhHHHHHHHhhcCCCcEEEecCC
Q 042373 212 ----------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRM-FDMG-FEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 212 ----------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~m-l~~g-f~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
.|-|-|+.-+... .+|.+.+++|+||||.= +... ....|..|. .++++..+++.|||
T Consensus 345 sIRFEdcTSekTvlKYMTDGmLlREfL~e----pdLasYSViiiDEAHERTL~TDILfgLvKDIa-r~RpdLKllIsSAT 419 (902)
T KOG0923|consen 345 SIRFEDCTSEKTVLKYMTDGMLLREFLSE----PDLASYSVIIVDEAHERTLHTDILFGLVKDIA-RFRPDLKLLISSAT 419 (902)
T ss_pred EEEeccccCcceeeeeecchhHHHHHhcc----ccccceeEEEeehhhhhhhhhhHHHHHHHHHH-hhCCcceEEeeccc
Confidence 3556555444332 36899999999999962 1111 111222222 34688889999999
Q ss_pred CChHH-HHHHHh--------------------------------------------------------------------
Q 042373 274 FPPRV-EILARK-------------------------------------------------------------------- 284 (494)
Q Consensus 274 ~~~~v-~~l~~~-------------------------------------------------------------------- 284 (494)
+..+- ..+...
T Consensus 420 ~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~ 499 (902)
T KOG0923|consen 420 MDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRR 499 (902)
T ss_pred cCHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHH
Confidence 76431 111111
Q ss_pred ------------------------------cCCccceeeccccccCCCCCCceEEEecCC------------------CC
Q 042373 285 ------------------------------TNVCNLSIANSVRARGLDEKELELVINFDA------------------PN 316 (494)
Q Consensus 285 ------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~------------------P~ 316 (494)
.|..+|++||++|.-.|-|++|.+||.-++ |-
T Consensus 500 LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~pi 579 (902)
T KOG0923|consen 500 LGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPI 579 (902)
T ss_pred hccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeee
Confidence 677899999999999999999999997544 44
Q ss_pred CHhHHHhhhccCCC--cceEEEEeccc
Q 042373 317 DYEDYVHHCCQSWL--KSCAFRFISEE 341 (494)
Q Consensus 317 s~~~yvhR~GRaGr--~G~aitfv~~~ 341 (494)
|..+-.||.||||| .|.|+.+++..
T Consensus 580 SKAsA~QRaGRAGRtgPGKCfRLYt~~ 606 (902)
T KOG0923|consen 580 SKASANQRAGRAGRTGPGKCFRLYTAW 606 (902)
T ss_pred chhhhhhhccccCCCCCCceEEeechh
Confidence 66677899999999 68899999843
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.2e-09 Score=120.83 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=51.9
Q ss_pred ccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc-----eEEEEeccc--CHHHHHHHHH
Q 042373 288 CNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS-----CAFRFISEE--NAIYATDLVK 351 (494)
Q Consensus 288 ~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G-----~aitfv~~~--~~~~~~~i~~ 351 (494)
+.+|++|.+++.|||+..+++||+||.+.++..+.|++||+.|-| .+|.|++.+ +.+.+....+
T Consensus 541 ~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~ 611 (1033)
T PLN03142 541 FVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYK 611 (1033)
T ss_pred eEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999966655 477888876 3344444433
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.2e-10 Score=92.41 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=56.6
Q ss_pred CCcEEEecCCCChHHHHHHH-h--cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc
Q 042373 264 DRQAVLFSPTFPPRVEILAR-K--TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS 332 (494)
Q Consensus 264 ~~Q~ilfSAT~~~~v~~l~~-~--~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G 332 (494)
+..+..+.+.++..-..-.- . .+...|||||+++++|+|+|++++||+|+.|.+...|+||+||++|.|
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 34456666666554433322 2 778899999999999999999999999999999999999999999976
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-09 Score=115.34 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=113.1
Q ss_pred hhhhHHHHHHHhc---CcceecccceEEEEEcccchhcccCChhHHHHHHHhhcC------------------------C
Q 042373 212 VRRGRMIDLLCKN---GVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP------------------------D 264 (494)
Q Consensus 212 ~TPgrl~dll~~~---~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~------------------------~ 264 (494)
|+|-.|..++... ....--|+.|.++|+|.||.|+ |+.|+++..+++++.. -
T Consensus 137 ASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg~a~~~ 215 (442)
T PF06862_consen 137 ASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDGQAKYY 215 (442)
T ss_pred EChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcCcchhe
Confidence 7888887777742 2223348999999999999887 8889999999988742 1
Q ss_pred CcEEEecCCCChHHHHHHHh------------------------------------------------------------
Q 042373 265 RQAVLFSPTFPPRVEILARK------------------------------------------------------------ 284 (494)
Q Consensus 265 ~Q~ilfSAT~~~~v~~l~~~------------------------------------------------------------ 284 (494)
||+|+||+...+++..+..+
T Consensus 216 RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~ 295 (442)
T PF06862_consen 216 RQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLK 295 (442)
T ss_pred eEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhh
Confidence 79999999999999888876
Q ss_pred ----------------------------------------------------cCCccceeecccc--ccCCCCCCceEEE
Q 042373 285 ----------------------------------------------------TNVCNLSIANSVR--ARGLDEKELELVI 310 (494)
Q Consensus 285 ----------------------------------------------------~g~~~ILVaTdv~--~rGlDi~~v~~VI 310 (494)
.|+.+||+.|.-+ -|-..|.+|++||
T Consensus 296 ~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~vi 375 (442)
T PF06862_consen 296 RDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVI 375 (442)
T ss_pred hccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEE
Confidence 8999999999866 5778999999999
Q ss_pred ecCCCCCHhHHHhhhcc-CC--------CcceEEEEecccCHHHHHHHHH
Q 042373 311 NFDAPNDYEDYVHHCCQ-SW--------LKSCAFRFISEENAIYATDLVK 351 (494)
Q Consensus 311 nyd~P~s~~~yvhR~GR-aG--------r~G~aitfv~~~~~~~~~~i~~ 351 (494)
.|.+|.++.-|-.-+.- .. ....|.++++..|.-.+..|+-
T Consensus 376 FY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 376 FYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred EECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 99999999998876654 11 2468999999988877777663
|
; GO: 0005634 nucleus |
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-09 Score=111.50 Aligned_cols=214 Identities=17% Similarity=0.180 Sum_probs=134.5
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
.|..|...+.++.-.+.|++..----+..+...+..+.+++-+++++.||||||.-.---++...... ...+
T Consensus 23 ~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~--------~~~v 94 (699)
T KOG0925|consen 23 AINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH--------LTGV 94 (699)
T ss_pred hcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh--------ccce
Confidence 37789999999988888876422222334445556666778889999999999975433333333321 1112
Q ss_pred EEEccchhHHHhh-------------------------hhhhHHHHHHH-----hcCcceecccceEEEEEcccchhc-c
Q 042373 199 LVMAPTGELVRQQ-------------------------VRRGRMIDLLC-----KNGVKITNLTRVTYLVLDEADRMF-D 247 (494)
Q Consensus 199 LIl~PTreLa~Qi-------------------------~TPgrl~dll~-----~~~~~~~~l~~l~~lVlDEaD~ml-~ 247 (494)
.---|.|--|.++ ++|..++..+. +.....-.|.+..++||||||.=. .
T Consensus 95 ~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlA 174 (699)
T KOG0925|consen 95 ACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLA 174 (699)
T ss_pred eecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHH
Confidence 2233777776666 34444433221 111111247899999999999611 1
Q ss_pred c-CChhHHHHHHHhhcCCCcEEEecCCCChH--------------------------------HHHHHHh----------
Q 042373 248 M-GFEPQITRIVQNIRPDRQAVLFSPTFPPR--------------------------------VEILARK---------- 284 (494)
Q Consensus 248 ~-gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~--------------------------------v~~l~~~---------- 284 (494)
. -....+..++.. +++..+|.+|||+-.. ++..++.
T Consensus 175 TDiLmGllk~v~~~-rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg~~PvEi~Yt~e~erDylEaairtV~qih~~ee~ 253 (699)
T KOG0925|consen 175 TDILMGLLKEVVRN-RPDLKLVVMSATLDAEKFQRYFGNAPLLAVPGTHPVEIFYTPEPERDYLEAAIRTVLQIHMCEEP 253 (699)
T ss_pred HHHHHHHHHHHHhh-CCCceEEEeecccchHHHHHHhCCCCeeecCCCCceEEEecCCCChhHHHHHHHHHHHHHhccCC
Confidence 0 001122222222 3688899999985321 1111111
Q ss_pred ---------------------------------------------------------cCCccceeeccccccCCCCCCce
Q 042373 285 ---------------------------------------------------------TNVCNLSIANSVRARGLDEKELE 307 (494)
Q Consensus 285 ---------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~ 307 (494)
.-..+|+|+|+++.-.+-+++|.
T Consensus 254 GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLyP~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv 333 (699)
T KOG0925|consen 254 GDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLYPAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIV 333 (699)
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecCchhhccccCCCCcccCCCccceEEEEecchheeeeeccEE
Confidence 22456999999999999999999
Q ss_pred EEEecCC------------------CCCHhHHHhhhccCCC--cceEEEEeccc
Q 042373 308 LVINFDA------------------PNDYEDYVHHCCQSWL--KSCAFRFISEE 341 (494)
Q Consensus 308 ~VInyd~------------------P~s~~~yvhR~GRaGr--~G~aitfv~~~ 341 (494)
+||.-++ |-|..+--||.||+|| .|.|+.++++.
T Consensus 334 ~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~ 387 (699)
T KOG0925|consen 334 FVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEE 387 (699)
T ss_pred EEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHH
Confidence 9998554 5677788899999886 89999999874
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-10 Score=124.56 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=45.5
Q ss_pred cCCccceeeccccccCCCCCCceEEEe--------cCCCCCHhHH----------HhhhccCCC--cceEEEEeccc
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVIN--------FDAPNDYEDY----------VHHCCQSWL--KSCAFRFISEE 341 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VIn--------yd~P~s~~~y----------vhR~GRaGr--~G~aitfv~~~ 341 (494)
.|..-++|||+||.-.|-||+|.+||. ||--..+..| =||+||||| .|.||.|++..
T Consensus 628 ~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSA 704 (1172)
T KOG0926|consen 628 KGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSA 704 (1172)
T ss_pred CCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhH
Confidence 566668899999999999999999996 4444444444 389999999 67899998753
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=122.47 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=46.2
Q ss_pred CCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC-------cceEEEEecccCHHHHHHHHHHHH
Q 042373 286 NVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL-------KSCAFRFISEENAIYATDLVKAFE 354 (494)
Q Consensus 286 g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr-------~G~aitfv~~~~~~~~~~i~~~l~ 354 (494)
+..+|||+++.+..|.|.|.+++++ +|-|-....++|.+||..| .|..+-|+.. ...+.++|.
T Consensus 590 ~~~~ilIVvdmllTGFDaP~l~tLy-ldKplk~h~LlQai~R~nR~~~~~K~~g~IvDy~g~-----~~~l~~Al~ 659 (667)
T TIGR00348 590 ENPKLLIVVDMLLTGFDAPILNTLY-LDKPLKYHGLLQAIARTNRIDGKDKTFGLIVDYRGL-----EKSLIDALS 659 (667)
T ss_pred CCceEEEEEcccccccCCCccceEE-EeccccccHHHHHHHHhccccCCCCCCEEEEECcCh-----HHHHHHHHH
Confidence 3568999999999999999998887 6667655678999999666 2555655543 345555554
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.9e-10 Score=123.57 Aligned_cols=80 Identities=11% Similarity=0.151 Sum_probs=71.1
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCC-----CCCHhHHHhhhccCCC--cceEEEEecc---------cCHHHHHH
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDA-----PNDYEDYVHHCCQSWL--KSCAFRFISE---------ENAIYATD 348 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~-----P~s~~~yvhR~GRaGr--~G~aitfv~~---------~~~~~~~~ 348 (494)
.|.+.|||||++++||+|+|++++||++|. |.+...|+||+||+|| .|.+++|++. .+....+.
T Consensus 494 ~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~~~~~~~~~~~~~~~~~~ 573 (652)
T PRK05298 494 LGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAIDETERRRE 573 (652)
T ss_pred cCCceEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCCCCEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999885 7899999999999776 7899999984 46677888
Q ss_pred HHHHHHhccCcchHHH
Q 042373 349 LVKAFELSELVVRDDL 364 (494)
Q Consensus 349 i~~~l~~~~~~vp~~l 364 (494)
+...++.....+|..+
T Consensus 574 i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 574 IQIAYNEEHGITPKTI 589 (652)
T ss_pred HHHHhhhccCCCChhH
Confidence 8888899999999766
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.9e-10 Score=115.98 Aligned_cols=219 Identities=13% Similarity=0.054 Sum_probs=150.9
Q ss_pred HHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---
Q 042373 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--- 211 (494)
Q Consensus 135 ~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--- 211 (494)
.+..+..+....+|..+|..+..|+++++.-.|.+||.++|.+..+..+...+ ....+++.||.+|+...
T Consensus 278 ~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~-------~s~~~~~~~~~~~~~~~~~~ 350 (1034)
T KOG4150|consen 278 LLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH-------ATNSLLPSEMVEHLRNGSKG 350 (1034)
T ss_pred HHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc-------ccceecchhHHHHhhccCCc
Confidence 34556677889999999999999999999999999999999988877665433 23467888888888765
Q ss_pred ---------------------------------------hhhhHHHH-HHHhcCcceecccceEEEEEcccchhcccCCh
Q 042373 212 ---------------------------------------VRRGRMID-LLCKNGVKITNLTRVTYLVLDEADRMFDMGFE 251 (494)
Q Consensus 212 ---------------------------------------~TPgrl~d-ll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~ 251 (494)
..|...+. .|.+.-.....+-.+.++++||+|..+- -|.
T Consensus 351 ~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~ 429 (1034)
T KOG4150|consen 351 QVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF-PTK 429 (1034)
T ss_pred eEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec-chh
Confidence 01111111 1111000001123456789999996542 222
Q ss_pred ----hHHHHHHHhh-----cCCCcEEEecCCCChHHHHHHHh--------------------------------------
Q 042373 252 ----PQITRIVQNI-----RPDRQAVLFSPTFPPRVEILARK-------------------------------------- 284 (494)
Q Consensus 252 ----~~i~~Il~~l-----~~~~Q~ilfSAT~~~~v~~l~~~-------------------------------------- 284 (494)
.++++++..+ ..+-|++-.|+|+-..++.....
T Consensus 430 ~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~ 509 (1034)
T KOG4150|consen 430 ALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSS 509 (1034)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhh
Confidence 3444444333 24667888888876555433332
Q ss_pred -----------------------------------------------------------------------cCCccceee
Q 042373 285 -----------------------------------------------------------------------TNVCNLSIA 293 (494)
Q Consensus 285 -----------------------------------------------------------------------~g~~~ILVa 293 (494)
.|+..-+|+
T Consensus 510 ~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIa 589 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIA 589 (1034)
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEe
Confidence 688889999
Q ss_pred ccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc---eE--EEEecccCHHHHHHHHHHHHhccCcch
Q 042373 294 NSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS---CA--FRFISEENAIYATDLVKAFELSELVVR 361 (494)
Q Consensus 294 Tdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G---~a--itfv~~~~~~~~~~i~~~l~~~~~~vp 361 (494)
|+.+.-||||..++.|++.++|-++..+.|..|||||.. .+ +.+..+-+..++..-..++...+.++-
T Consensus 590 TNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~ 662 (1034)
T KOG4150|consen 590 TNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELH 662 (1034)
T ss_pred cchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeE
Confidence 999999999999999999999999999999999998732 23 333345677777777777766555543
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-09 Score=119.49 Aligned_cols=63 Identities=29% Similarity=0.301 Sum_probs=51.9
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.|| .|+.+|.-..-.++.|+..-++||||.|||. |.+.+--.+-.+ |.+++||+||+.|+.|+
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a~k--------gkr~yii~PT~~Lv~Q~ 141 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLAKK--------GKRVYIIVPTTTLVRQV 141 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHHHHHHhc--------CCeEEEEecCHHHHHHH
Confidence 466 8999999999999999999999999999995 444333333221 67899999999999998
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.9e-09 Score=122.61 Aligned_cols=74 Identities=24% Similarity=0.243 Sum_probs=62.2
Q ss_pred CCHHHHHHHHhCCCCCCChhHHHHHH----HHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc
Q 042373 128 LTTKILETFSKLNHENPVAIQAPASA----LIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP 203 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~aip----~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P 203 (494)
+++.+...+...||+ +.|.|.+.+. .+..|+++++.||||+|||++|++|++.+.. . +.++||.+|
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~--------~~~vvi~t~ 300 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T--------EKPVVISTN 300 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C--------CCeEEEEeC
Confidence 445677778889996 7899998666 5567899999999999999999999988764 1 447999999
Q ss_pred chhHHHhh
Q 042373 204 TGELVRQQ 211 (494)
Q Consensus 204 TreLa~Qi 211 (494)
|++|..|+
T Consensus 301 t~~Lq~Ql 308 (850)
T TIGR01407 301 TKVLQSQL 308 (850)
T ss_pred cHHHHHHH
Confidence 99999997
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.4e-09 Score=116.05 Aligned_cols=97 Identities=22% Similarity=0.206 Sum_probs=68.2
Q ss_pred CCCChhHHHHHHHHH----cCC-CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----
Q 042373 142 ENPVAIQAPASALII----SGL-DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----- 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il----~gr-dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----- 211 (494)
..|...|..||..+. .|+ -++++.-||+|||...+ .++..|+.... -.++|+|+-++.|+.|.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~~~------~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKSGW------VKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhcch------hheeeEEechHHHHHHHHHHHH
Confidence 467889999987654 453 48889999999998754 45666654321 45899999999999997
Q ss_pred -------------------------hhhhHHHHHHHhc--CcceecccceEEEEEcccchh
Q 042373 212 -------------------------VRRGRMIDLLCKN--GVKITNLTRVTYLVLDEADRM 245 (494)
Q Consensus 212 -------------------------~TPgrl~dll~~~--~~~~~~l~~l~~lVlDEaD~m 245 (494)
+|-.+|...+... ....+.....+++|+|||||=
T Consensus 237 ~~~P~~~~~n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg 297 (875)
T COG4096 237 DFLPFGTKMNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG 297 (875)
T ss_pred HhCCCccceeeeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh
Confidence 3445555555432 112233445899999999983
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-08 Score=111.80 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=54.7
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC-----CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCC
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG-----LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDS 195 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g-----rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~ 195 (494)
-.|+.+.. .++..+|.-..-.+|.|+|+.||...+.| |--++. ..|+|||+..+- +-+.+- .
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIM-AcGTGKTfTsLk-isEala----------~ 206 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIM-ACGTGKTFTSLK-ISEALA----------A 206 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEE-ecCCCccchHHH-HHHHHh----------h
Confidence 45665543 34445554455679999999999999977 333433 469999987653 344432 3
Q ss_pred CeEEEEccchhHHHhh
Q 042373 196 PVGLVMAPTGELVRQQ 211 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi 211 (494)
.++|+|+|+..|..|.
T Consensus 207 ~~iL~LvPSIsLLsQT 222 (1518)
T COG4889 207 ARILFLVPSISLLSQT 222 (1518)
T ss_pred hheEeecchHHHHHHH
Confidence 5799999999999987
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.3e-08 Score=78.32 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=55.6
Q ss_pred CCcEEEecCCCChHHHHHH-H--hcCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc
Q 042373 264 DRQAVLFSPTFPPRVEILA-R--KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS 332 (494)
Q Consensus 264 ~~Q~ilfSAT~~~~v~~l~-~--~~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G 332 (494)
...++.+.+.+++....-. . ..+...|||+|+++++|+|++++++||.++.|.+...|+|++||++|.|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 3456666665665433222 2 1677899999999999999999999999999999999999999999876
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.6e-08 Score=112.02 Aligned_cols=64 Identities=31% Similarity=0.348 Sum_probs=51.8
Q ss_pred HhCCCCCCChhHHHHHHH----HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 137 SKLNHENPVAIQAPASAL----IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 137 ~~~g~~~ptpiQ~~aip~----il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.-.|| ++.+-|.+.... +..++.+++.|+||||||++|++|++.+. .+.++||++|||+|+.|+
T Consensus 240 ~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----------~~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 240 ALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----------DQRQIIVSVPTKILQDQI 307 (820)
T ss_pred ccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----------CCCcEEEEeCcHHHHHHH
Confidence 33566 589999884443 33568899999999999999999988753 156899999999999998
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.9e-07 Score=104.57 Aligned_cols=74 Identities=11% Similarity=0.092 Sum_probs=57.9
Q ss_pred cCCccceeeccccccCCCCC---CceE-----EEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHH--H--HHH
Q 042373 285 TNVCNLSIANSVRARGLDEK---ELEL-----VINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIY--A--TDL 349 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~---~v~~-----VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~--~--~~i 349 (494)
.+...|+|||++|+||+||+ +|.. ||+++.|.+...|+||+||+|| .|.+++|++.+|.-. + ..+
T Consensus 644 G~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~~~~i 723 (1025)
T PRK12900 644 GQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRV 723 (1025)
T ss_pred CCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhCcHHH
Confidence 67789999999999999999 5644 5999999999999999999555 789999999875421 1 245
Q ss_pred HHHHHhccC
Q 042373 350 VKAFELSEL 358 (494)
Q Consensus 350 ~~~l~~~~~ 358 (494)
.++++..+.
T Consensus 724 ~~~~~~~~~ 732 (1025)
T PRK12900 724 ISVMDRLGH 732 (1025)
T ss_pred HHHHHHcCC
Confidence 566655443
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-07 Score=106.41 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=35.0
Q ss_pred CCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc
Q 042373 286 NVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS 332 (494)
Q Consensus 286 g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G 332 (494)
+...|+|+|.|.+-|+|+. .+++|- -|.++...|||+||..|.|
T Consensus 837 ~~~~i~v~Tqv~E~g~D~d-fd~~~~--~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHD-YDWAIA--DPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred CCCeEEEEeeeEEEEeccc-CCeeee--ccCcHHHHHHHhhcccccc
Confidence 4667999999999999984 566653 4778999999999965544
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-07 Score=98.10 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=42.6
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCC---------CCHhHHHhhhccCCC------cceEEEEec
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAP---------NDYEDYVHHCCQSWL------KSCAFRFIS 339 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P---------~s~~~yvhR~GRaGr------~G~aitfv~ 339 (494)
.+.++||||||..++||++ +|+.||.|++- -+..+-.|-.||||| .|.+.+|-.
T Consensus 407 ~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 407 SNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS 475 (700)
T ss_pred CCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH
Confidence 6899999999999999998 68888888763 456777888888887 455555543
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-07 Score=83.94 Aligned_cols=108 Identities=18% Similarity=0.221 Sum_probs=63.6
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--------------------------
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------------------------- 211 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------------------------- 211 (494)
|+=.++-..+|+|||.-.+.-++...... +.++|||.|||.++..+
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~--------~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i 75 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR--------RLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSII 75 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT--------T--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSE
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc--------cCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcc
Confidence 44457778999999998777777766554 67899999999999887
Q ss_pred --hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccC--ChhHHHHHHHhhcCCCcEEEecCCCChHHH
Q 042373 212 --VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG--FEPQITRIVQNIRPDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 212 --~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~g--f~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~ 279 (494)
.|-+.+...+.+. ..+.+.+++|+||||.+--.. +.-.+...-. .....+|++|||.|....
T Consensus 76 ~vMc~at~~~~~~~p----~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~--~g~~~~i~mTATPPG~~~ 141 (148)
T PF07652_consen 76 DVMCHATYGHFLLNP----CRLKNYDVIIMDECHFTDPTSIAARGYLRELAE--SGEAKVIFMTATPPGSED 141 (148)
T ss_dssp EEEEHHHHHHHHHTS----SCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH--TTS-EEEEEESS-TT---
T ss_pred cccccHHHHHHhcCc----ccccCccEEEEeccccCCHHHHhhheeHHHhhh--ccCeeEEEEeCCCCCCCC
Confidence 1223344444432 236789999999999743221 2222222211 134579999999886653
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-06 Score=96.76 Aligned_cols=61 Identities=25% Similarity=0.249 Sum_probs=53.7
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+|. .|++.|....-.++.|+ |+...||+|||++..+|++...+. |..+-|++||--||.|-
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~---------G~~VhvvT~NdyLA~RD 135 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ---------GRRVHVITVNDYLARRD 135 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc---------CCCeEEEcCCHHHHHHH
Confidence 565 79999999998998885 778999999999999999988765 66799999999999986
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.6e-07 Score=78.44 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=56.3
Q ss_pred CCcEEEecCCCChHHHHHHH---hcCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc
Q 042373 264 DRQAVLFSPTFPPRVEILAR---KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS 332 (494)
Q Consensus 264 ~~Q~ilfSAT~~~~v~~l~~---~~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G 332 (494)
...+..+.+.+++....... ..+...||++|..+++|+|++++++||.++.|.+...|+|++||++|.|
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~ 123 (131)
T cd00079 52 GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAG 123 (131)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCC
Confidence 45677777666654433222 2777899999999999999999999999999999999999999988766
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.8e-06 Score=93.21 Aligned_cols=61 Identities=21% Similarity=0.214 Sum_probs=49.7
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+|. .|+++|...--.+..| -|+...||+|||++..+|++-..+. |..+-|++||.-||.|-
T Consensus 79 lGm-~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~---------G~~VhvvT~ndyLA~RD 139 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALS---------GKGVHVVTVNDYLARRD 139 (913)
T ss_pred hCC-CcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHH
Confidence 563 7888888765555544 5889999999999999999877654 67899999999999986
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.3e-07 Score=102.86 Aligned_cols=64 Identities=20% Similarity=0.154 Sum_probs=52.3
Q ss_pred CCCCCCChhHHHHHHHH----HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASALI----ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~i----l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
-|| ++.|-|.+.+..+ ..++.+++.|+||+|||++|++|++.+.... +.+++|-++|+.|..|+
T Consensus 254 ~~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~--------~~~vvIsT~T~~LQ~Ql 321 (928)
T PRK08074 254 PKY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKK--------EEPVVISTYTIQLQQQL 321 (928)
T ss_pred CCC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhcc--------CCeEEEEcCCHHHHHHH
Confidence 355 6899999855544 3678899999999999999999998765432 56799999999999997
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.1e-06 Score=92.38 Aligned_cols=100 Identities=18% Similarity=0.196 Sum_probs=70.6
Q ss_pred CCCChhHHHHHHHHHcC---CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 142 ENPVAIQAPASALIISG---LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~g---rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
..+.|+|..++..++.+ |.-|++-|.|+|||+.-+-.+. .+ ...+||||.+---+.|.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-ti-----------kK~clvLcts~VSVeQWkqQfk~w 368 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TI-----------KKSCLVLCTSAVSVEQWKQQFKQW 368 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-ee-----------cccEEEEecCccCHHHHHHHHHhh
Confidence 35789999999998843 7889999999999987654433 11 44689999887777776
Q ss_pred ----------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCCh
Q 042373 212 ----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFE 251 (494)
Q Consensus 212 ----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~ 251 (494)
....+++++|.. +.+.++||||+|-+...-|+
T Consensus 369 sti~d~~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~--------~EWGllllDEVHvvPA~MFR 440 (776)
T KOG1123|consen 369 STIQDDQICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRG--------REWGLLLLDEVHVVPAKMFR 440 (776)
T ss_pred cccCccceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhc--------CeeeeEEeehhccchHHHHH
Confidence 011334444443 35789999999987766676
Q ss_pred hHHHHHHHhh
Q 042373 252 PQITRIVQNI 261 (494)
Q Consensus 252 ~~i~~Il~~l 261 (494)
..+.-+-.++
T Consensus 441 RVlsiv~aHc 450 (776)
T KOG1123|consen 441 RVLSIVQAHC 450 (776)
T ss_pred HHHHHHHHHh
Confidence 6666555554
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-06 Score=99.64 Aligned_cols=114 Identities=22% Similarity=0.284 Sum_probs=81.3
Q ss_pred CCCCChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--------
Q 042373 141 HENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------- 211 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------- 211 (494)
|....|||.++++.+... .++++.+|+|||||.+.-+.+++ + ....+++++.|.-+.+..+
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-----~-----~~~~~~vyi~p~~~i~~~~~~~w~~~f 1210 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-----P-----DTIGRAVYIAPLEEIADEQYRDWEKKF 1210 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-----C-----ccceEEEEecchHHHHHHHHHHHHHhh
Confidence 444589999999998865 57888899999999999888875 1 1256899999998888765
Q ss_pred -----------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccC------ChhHHHH
Q 042373 212 -----------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG------FEPQITR 256 (494)
Q Consensus 212 -----------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~g------f~~~i~~ 256 (494)
+||.++ +++. +.+.+++.|.||.|.+-+.. ... ++.
T Consensus 1211 ~~~~G~~~~~l~ge~s~~lkl~~~~~vii~tpe~~-d~lq-------~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ 1281 (1674)
T KOG0951|consen 1211 SKLLGLRIVKLTGETSLDLKLLQKGQVIISTPEQW-DLLQ-------SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRY 1281 (1674)
T ss_pred ccccCceEEecCCccccchHHhhhcceEEechhHH-HHHh-------hhhhcceEeeehhhhhcccCCceEEEEee-HHH
Confidence 577664 4442 46788999999999877421 112 555
Q ss_pred HHHhhcCCCcEEEecCC
Q 042373 257 IVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 257 Il~~l~~~~Q~ilfSAT 273 (494)
|-.++-+..+++.+|..
T Consensus 1282 ia~q~~k~ir~v~ls~~ 1298 (1674)
T KOG0951|consen 1282 IASQLEKKIRVVALSSS 1298 (1674)
T ss_pred HHHHHHhheeEEEeehh
Confidence 65555555555555443
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=98.29 E-value=1e-06 Score=97.67 Aligned_cols=55 Identities=25% Similarity=0.250 Sum_probs=46.3
Q ss_pred HHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh
Q 042373 152 SALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR 213 (494)
Q Consensus 152 ip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T 213 (494)
...+..++.+++.|+||+|||++|++|++..+.... +.++||++||++|+.|+..
T Consensus 10 ~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~-------~~rvlIstpT~~Lq~Ql~~ 64 (636)
T TIGR03117 10 LTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERP-------DQKIAIAVPTLALMGQLWS 64 (636)
T ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhcc-------CceEEEECCcHHHHHHHHH
Confidence 344557789999999999999999999998875321 5689999999999999864
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.3e-06 Score=85.68 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=52.9
Q ss_pred CCChhHHH----HHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 143 NPVAIQAP----ASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 143 ~ptpiQ~~----aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.|+|.|.+ ++..+..|.++++.||||+|||++|++|++.++....... .+.+++|+++|..+..|.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~---~~~kvi~~t~T~~~~~q~ 77 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI---QKIKLIYLSRTVSEIEKR 77 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc---cccceeEEeccHHHHHHH
Confidence 46999999 5556678899999999999999999999998876533110 134799999999998775
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.3e-06 Score=85.68 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=52.9
Q ss_pred CCChhHHH----HHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 143 NPVAIQAP----ASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 143 ~ptpiQ~~----aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.|+|.|.+ ++..+..|.++++.||||+|||++|++|++.++....... .+.+++|+++|..+..|.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~---~~~kvi~~t~T~~~~~q~ 77 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI---QKIKLIYLSRTVSEIEKR 77 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc---cccceeEEeccHHHHHHH
Confidence 46999999 5556678899999999999999999999998876533110 134799999999998775
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-05 Score=76.91 Aligned_cols=117 Identities=19% Similarity=0.188 Sum_probs=72.1
Q ss_pred CCChhHHHHHHHHHcCC--CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh-----hhh
Q 042373 143 NPVAIQAPASALIISGL--DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV-----RRG 215 (494)
Q Consensus 143 ~ptpiQ~~aip~il~gr--dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~-----TPg 215 (494)
++++-|..++-.++... =++++++.|||||.+ +-.+...+... +..+++++||...+..+. ...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~--------g~~v~~~apT~~Aa~~L~~~~~~~a~ 71 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA--------GKRVIGLAPTNKAAKELREKTGIEAQ 71 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT--------T--EEEEESSHHHHHHHHHHHTS-EE
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC--------CCeEEEECCcHHHHHHHHHhhCcchh
Confidence 36889999999997554 366779999999964 33455555442 568999999988887661 112
Q ss_pred HHHHHHHhcCccee----cccceEEEEEcccchhcccCChhHHHHHHHhhcC-CCcEEEecC
Q 042373 216 RMIDLLCKNGVKIT----NLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP-DRQAVLFSP 272 (494)
Q Consensus 216 rl~dll~~~~~~~~----~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~-~~Q~ilfSA 272 (494)
.+..++........ .+...++||||||-.+- ..++..++..++. +.++|++-=
T Consensus 72 Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~klilvGD 129 (196)
T PF13604_consen 72 TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKSGAKLILVGD 129 (196)
T ss_dssp EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-EEEEEE-
T ss_pred hHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhcCCEEEEECC
Confidence 24444443222111 15566899999998654 4567777777765 566666543
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00011 Score=82.99 Aligned_cols=60 Identities=23% Similarity=0.291 Sum_probs=46.8
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
+|. .|+++|...--.+..|+ |+...||=|||++..+|+.-..+. |..+=|++..--||..
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~---------GkgVhVVTvNdYLA~R 134 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT---------GKGVIVSTVNEYLAER 134 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc---------CCceEEEecchhhhhh
Confidence 566 79999998887777775 789999999999999999765544 4456677777777654
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.8e-05 Score=76.20 Aligned_cols=118 Identities=16% Similarity=0.201 Sum_probs=68.4
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-hhh------
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-VRR------ 214 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-~TP------ 214 (494)
.-.|.-|..++.+++...-+++.+|.|||||+..+...++.+.... --+.+|+-|+.+....+ .-|
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~-------~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE-------YDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS--------SEEEEEE-S--TT----SS-------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC-------CcEEEEEecCCCCccccccCCCCHHHH
Confidence 3468899999999998888889999999999999998888887632 34677777887765555 112
Q ss_pred ------------------hHHHHHHHhcCcceeccc-----c--eEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEE
Q 042373 215 ------------------GRMIDLLCKNGVKITNLT-----R--VTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269 (494)
Q Consensus 215 ------------------grl~dll~~~~~~~~~l~-----~--l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~il 269 (494)
+.+-.++..+......+. . -.+||+|||..+. ..++..++.++..+..+++
T Consensus 76 ~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t----~~~~k~ilTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLT----PEELKMILTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG------HHHHHHHHTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCC----HHHHHHHHcccCCCcEEEE
Confidence 222333433333222221 1 2799999998765 4577778887765555554
Q ss_pred e
Q 042373 270 F 270 (494)
Q Consensus 270 f 270 (494)
+
T Consensus 152 ~ 152 (205)
T PF02562_consen 152 T 152 (205)
T ss_dssp E
T ss_pred e
Confidence 4
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.4e-05 Score=86.44 Aligned_cols=117 Identities=20% Similarity=0.292 Sum_probs=71.5
Q ss_pred CCCE-EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhh---------------------
Q 042373 158 GLDS-VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRG--------------------- 215 (494)
Q Consensus 158 grdv-i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPg--------------------- 215 (494)
.+.+ ++.||.|||||.+.+-++ ......+ ...+|+|+-.|.|+.+++.--
T Consensus 48 ~~~V~vVRSpMGTGKTtaLi~wL-k~~l~~~-------~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~ 119 (824)
T PF02399_consen 48 KRGVLVVRSPMGTGKTTALIRWL-KDALKNP-------DKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIIDG 119 (824)
T ss_pred CCCeEEEECCCCCCcHHHHHHHH-HHhccCC-------CCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccccccc
Confidence 4444 566999999998654433 3332221 568999999999999873210
Q ss_pred ----HH---HHHHHhcCcceecccceEEEEEcccchhcccCChhH------HHH-HHHhhcCCCcEEEecCCCChHHHHH
Q 042373 216 ----RM---IDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQ------ITR-IVQNIRPDRQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 216 ----rl---~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~------i~~-Il~~l~~~~Q~ilfSAT~~~~v~~l 281 (494)
|| ++-|.+- ....+.+.++|||||+...+..=|.+. +.. +...++....+|++-|++....-++
T Consensus 120 ~~~~rLivqIdSL~R~--~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdF 197 (824)
T PF02399_consen 120 RPYDRLIVQIDSLHRL--DGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDF 197 (824)
T ss_pred cccCeEEEEehhhhhc--ccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHH
Confidence 00 0001110 001245689999999987775423222 222 2334466778889999998887777
Q ss_pred HHh
Q 042373 282 ARK 284 (494)
Q Consensus 282 ~~~ 284 (494)
...
T Consensus 198 l~~ 200 (824)
T PF02399_consen 198 LAS 200 (824)
T ss_pred HHH
Confidence 765
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.2e-05 Score=90.97 Aligned_cols=63 Identities=27% Similarity=0.198 Sum_probs=51.2
Q ss_pred CCCCCChhHHHHHHHHH---cC------CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 140 NHENPVAIQAPASALII---SG------LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 140 g~~~ptpiQ~~aip~il---~g------rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
|| ++.+-|.+.+-.+. .+ +.+++-|+||+|||++|++|.+...... +.++||-+.|+.|-.|
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~--------~k~vVIST~T~~LQeQ 93 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE--------KKKLVISTATVALQEQ 93 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc--------CCeEEEEcCCHHHHHH
Confidence 56 67999998555543 43 6688899999999999999998766543 4579999999999999
Q ss_pred h
Q 042373 211 Q 211 (494)
Q Consensus 211 i 211 (494)
+
T Consensus 94 L 94 (697)
T PRK11747 94 L 94 (697)
T ss_pred H
Confidence 8
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.4e-05 Score=75.65 Aligned_cols=110 Identities=18% Similarity=0.193 Sum_probs=56.0
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------h-----------------
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------V----------------- 212 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------~----------------- 212 (494)
..+..|++-..|+|||+..+.-+. .+....+.. ..-.+|||||. .+..|. +
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~---~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~ 98 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALIS-YLKNEFPQR---GEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERR 98 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTS---S-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHH
T ss_pred CCCCEEEEECCCCCchhhhhhhhh-hhhhccccc---cccceeEeecc-chhhhhhhhhccccccccccccccccccccc
Confidence 346889999999999987665444 444332110 01249999999 665665 1
Q ss_pred ---------------hhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCC
Q 042373 213 ---------------RRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274 (494)
Q Consensus 213 ---------------TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~ 274 (494)
|...+...........+.--+..+||+||+|.+- +........+..+. ....+++|||.
T Consensus 99 ~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k--~~~s~~~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 99 RLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLK--NKDSKRYKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp HTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGT--TTTSHHHHHHHCCC-ECEEEEE-SS-
T ss_pred cccccccccceeeeccccccccccccccccccccccceeEEEecccccc--cccccccccccccc-cceEEeecccc
Confidence 1111110000000001111248899999999984 33344455555565 66778899994
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0004 Score=76.82 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=43.8
Q ss_pred CCccceeeccccccCCCCCCceEEEecCCCCCHhHHHh---hhccCCC--cceEEEEecccC
Q 042373 286 NVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH---HCCQSWL--KSCAFRFISEEN 342 (494)
Q Consensus 286 g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvh---R~GRaGr--~G~aitfv~~~~ 342 (494)
..+-.|++|-..+-||++...++||.||--.++..=+| |+-|-|. .=.+|.|++.+.
T Consensus 539 ~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 539 EKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred ceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 45668899999999999999999999999887766655 4444343 335788898873
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00018 Score=71.43 Aligned_cols=120 Identities=18% Similarity=0.123 Sum_probs=76.7
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-hhhhH-
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-VRRGR- 216 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-~TPgr- 216 (494)
.++.--+..|...+-.+.++..+++.+++|||||+..+.-.++.+.... --+++|.-|+.+....+ ..||.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-------~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-------VDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-------eeEEEEeCCCCCchhhhCcCCCCH
Confidence 5566778899999999999888899999999999987777776664421 33566666877666555 12221
Q ss_pred ----------HHH-------------HHH--hcCcceeccc-------ceEEEEEcccchhcccCChhHHHHHHHhhcCC
Q 042373 217 ----------MID-------------LLC--KNGVKITNLT-------RVTYLVLDEADRMFDMGFEPQITRIVQNIRPD 264 (494)
Q Consensus 217 ----------l~d-------------ll~--~~~~~~~~l~-------~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~ 264 (494)
+.| ++. .+......+. .-.+||||||+.+- ..++..++.++..+
T Consensus 128 ~eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~----~~~~k~~ltR~g~~ 203 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVT----AAQMKMFLTRLGEN 203 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCC----HHHHHHHHhhcCCC
Confidence 111 111 1111111111 12699999999765 36777777777555
Q ss_pred CcEEE
Q 042373 265 RQAVL 269 (494)
Q Consensus 265 ~Q~il 269 (494)
..+|+
T Consensus 204 sk~v~ 208 (262)
T PRK10536 204 VTVIV 208 (262)
T ss_pred CEEEE
Confidence 55444
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00058 Score=76.73 Aligned_cols=71 Identities=10% Similarity=0.107 Sum_probs=48.4
Q ss_pred cCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------------------hhh-hHHHHHH--H
Q 042373 165 TETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------------------VRR-GRMIDLL--C 222 (494)
Q Consensus 165 a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------------------~TP-grl~dll--~ 222 (494)
+-+|||||-.|+-.+-..+.. |..+|||+|...|..|+ .++ .|+..++ .
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~---------Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRA---------GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHc---------CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHh
Confidence 336999999998766665543 66899999999999998 122 2222222 2
Q ss_pred hcCcc---------eecccceEEEEEcccch
Q 042373 223 KNGVK---------ITNLTRVTYLVLDEADR 244 (494)
Q Consensus 223 ~~~~~---------~~~l~~l~~lVlDEaD~ 244 (494)
.+..+ +..+.++.+||+||=|-
T Consensus 238 ~G~~~IViGtRSAvFaP~~~LgLIIvdEEhd 268 (665)
T PRK14873 238 RGQARVVVGTRSAVFAPVEDLGLVAIWDDGD 268 (665)
T ss_pred CCCCcEEEEcceeEEeccCCCCEEEEEcCCc
Confidence 22221 23478999999999874
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00015 Score=81.41 Aligned_cols=66 Identities=27% Similarity=0.303 Sum_probs=55.3
Q ss_pred hCCCCCCChhHHHHHHHH----HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 138 KLNHENPVAIQAPASALI----ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~i----l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.+.+.+|.+.|.+.+-.+ ..|+.+++.||||+|||++|++|.+...... +..++|.++|+.|-.|+
T Consensus 10 ~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~--------~~~viist~t~~lq~q~ 79 (654)
T COG1199 10 AFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE--------GKKVIISTRTKALQEQL 79 (654)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc--------CCcEEEECCCHHHHHHH
Confidence 345568999999987544 3556699999999999999999999987654 46799999999999998
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00056 Score=77.77 Aligned_cols=123 Identities=17% Similarity=0.097 Sum_probs=81.3
Q ss_pred hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh----h
Q 042373 138 KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV----R 213 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~----T 213 (494)
..++ .+++-|+.|+-.++.++-+++.++.|||||... -.++..+.... . ...+++++||-.-|..+. .
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~-----~-~~~v~l~ApTg~AA~~L~e~~g~ 390 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG-----G-LLPVGLAAPTGRAAKRLGEVTGL 390 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC-----C-CceEEEEeCchHHHHHHHHhcCC
Confidence 3554 689999999999999999999999999999632 23333332221 0 146788899977776651 0
Q ss_pred -hhHHHHHHHhcCcc-----eecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 214 -RGRMIDLLCKNGVK-----ITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 214 -Pgrl~dll~~~~~~-----~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
...+..+|...... .-+....++||+|||+++- ...+..++..++...++|++.=
T Consensus 391 ~a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~~rlilvGD 451 (720)
T TIGR01448 391 TASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAALPDHARLLLVGD 451 (720)
T ss_pred ccccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHhCCCCCEEEEECc
Confidence 11233444322111 0112457899999999654 3467788888888888888753
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00046 Score=77.20 Aligned_cols=71 Identities=7% Similarity=0.042 Sum_probs=53.5
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccC-----CCcce-----------EEEEecccCHHHHHH
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQS-----WLKSC-----------AFRFISEENAIYATD 348 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRa-----Gr~G~-----------aitfv~~~~~~~~~~ 348 (494)
....+.+.+-..+..|.|-|+|=.+.-..-..|..+=+|-+||+ ...|. -..|++..+..++..
T Consensus 481 d~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~ 560 (985)
T COG3587 481 DEPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKA 560 (985)
T ss_pred CCcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHH
Confidence 45667788888999999999998888787788888889999992 22332 334566678888888
Q ss_pred HHHHHHh
Q 042373 349 LVKAFEL 355 (494)
Q Consensus 349 i~~~l~~ 355 (494)
|++-++.
T Consensus 561 LqkEI~~ 567 (985)
T COG3587 561 LQKEIND 567 (985)
T ss_pred HHHHHHH
Confidence 8876553
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0041 Score=70.21 Aligned_cols=54 Identities=13% Similarity=0.231 Sum_probs=44.3
Q ss_pred ccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc-----eEEEEeccc
Q 042373 288 CNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS-----CAFRFISEE 341 (494)
Q Consensus 288 ~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G-----~aitfv~~~ 341 (494)
.-.|.+|-..+.||++-+.+.||.||...++..=.|-++|+-|.| .+|.|++..
T Consensus 649 ~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 649 FVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred eEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 335566778899999999999999999999999999888866555 477888765
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0016 Score=76.00 Aligned_cols=120 Identities=23% Similarity=0.118 Sum_probs=77.5
Q ss_pred CCCCCCChhHHHHHHHHHcCCC-EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----hh
Q 042373 139 LNHENPVAIQAPASALIISGLD-SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----VR 213 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grd-vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----~T 213 (494)
.|+ .+++-|.+|+..++.+++ +++.+..|+|||.. +-.++..+... |..++.++||---|..+ +.
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~--------G~~V~~~ApTGkAA~~L~e~tGi 412 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA--------GYEVRGAALSGIAAENLEGGSGI 412 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc--------CCeEEEecCcHHHHHHHhhccCc
Confidence 454 689999999999999776 57779999999974 33344433322 67899999998777665 11
Q ss_pred hhH-HHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhh-cCCCcEEEecC
Q 042373 214 RGR-MIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI-RPDRQAVLFSP 272 (494)
Q Consensus 214 Pgr-l~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l-~~~~Q~ilfSA 272 (494)
+.+ +..++..-......+...++||||||-++- ..++..++... +...++||+.=
T Consensus 413 ~a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~garvVLVGD 469 (988)
T PRK13889 413 ASRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADAGAKVVLVGD 469 (988)
T ss_pred chhhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhCCCEEEEECC
Confidence 112 222222100112346678899999998543 33566666644 45667777643
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00053 Score=71.42 Aligned_cols=93 Identities=15% Similarity=0.222 Sum_probs=56.0
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------hhhh-------HHHHHHHhcCc
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------VRRG-------RMIDLLCKNGV 226 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------~TPg-------rl~dll~~~~~ 226 (494)
+++.+..|||||+..+- ++..+.. ...+..+++++++..|...+ ..+. .+..++.....
T Consensus 4 ~~I~G~aGTGKTvla~~-l~~~l~~------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~ 76 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALN-LAKELQN------SEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSE 76 (352)
T ss_pred EEEEecCCcCHHHHHHH-HHHHhhc------cccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhccc
Confidence 67889999999986443 3333311 11266899999999998754 1011 11111211100
Q ss_pred ceecccceEEEEEcccchhcccC-------ChhHHHHHHHh
Q 042373 227 KITNLTRVTYLVLDEADRMFDMG-------FEPQITRIVQN 260 (494)
Q Consensus 227 ~~~~l~~l~~lVlDEaD~ml~~g-------f~~~i~~Il~~ 260 (494)
........++||+||||+|...+ ...++..|+..
T Consensus 77 ~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 77 SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 01234678999999999999832 24677777766
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00054 Score=78.90 Aligned_cols=46 Identities=20% Similarity=0.135 Sum_probs=35.3
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.++.+..+||||||.+|+-.|+....... ..+.||+||+.+.-..+
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~-------~~~fii~vp~~aI~egv 105 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG-------LFKFIIVVPTPAIKEGT 105 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC-------CcEEEEEeCCHHHHHHH
Confidence 47889999999999999988776543321 45799999997765554
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0022 Score=71.43 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=45.2
Q ss_pred ceeeccccccCCCCCCceEEEecCCCCCHhHHHh---hhccCCC-c-ceEEEEeccc---CHHHHHHHHH
Q 042373 290 LSIANSVRARGLDEKELELVINFDAPNDYEDYVH---HCCQSWL-K-SCAFRFISEE---NAIYATDLVK 351 (494)
Q Consensus 290 ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvh---R~GRaGr-~-G~aitfv~~~---~~~~~~~i~~ 351 (494)
.|++|-|..-|+++.+.+.||.||+-.++..=.| |+=|.|. + =.+|.|++.. +..|-++|-+
T Consensus 602 FLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~K 671 (923)
T KOG0387|consen 602 FLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFK 671 (923)
T ss_pred EEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHH
Confidence 6788999999999999999999999888777777 4444443 2 2467788765 4445555544
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0012 Score=73.59 Aligned_cols=119 Identities=23% Similarity=0.295 Sum_probs=79.1
Q ss_pred ChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh------------
Q 042373 145 VAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV------------ 212 (494)
Q Consensus 145 tpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~------------ 212 (494)
+++|+.|+-..+..+-+++.+++|||||..- .-++..+.... ......+++++||..-|..+.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~----~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA----DGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc----CCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 5899999999999999999999999999643 22333332211 011356888899977766551
Q ss_pred ----------hhhHHHHHHHhcCcc------eecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 213 ----------RRGRMIDLLCKNGVK------ITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 213 ----------TPgrl~dll~~~~~~------~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
....+..+|...... ..+.-.+++||||||-++ + .+.+..+++.+++..++|++.=
T Consensus 229 ~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll~al~~~~rlIlvGD 300 (615)
T PRK10875 229 TDEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLIDALPPHARVIFLGD 300 (615)
T ss_pred chhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHHHhcccCCEEEEecc
Confidence 112344455432111 112334689999999843 3 5678888999999988888753
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0011 Score=68.42 Aligned_cols=123 Identities=20% Similarity=0.223 Sum_probs=85.2
Q ss_pred hCCCCCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----
Q 042373 138 KLNHENPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---- 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---- 211 (494)
-.|+.--...|.-|+..++.- .=|.+.++-|||||+..+...+...+.++. ..+.||.-|+..+...+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~------y~KiiVtRp~vpvG~dIGfLP 296 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR------YRKIIVTRPTVPVGEDIGFLP 296 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh------hceEEEecCCcCcccccCcCC
Confidence 367766677788888888865 345677999999999999888888877542 44677778998888777
Q ss_pred --------------------------hhhhHHHHHHHhcCcceecccce-------EEEEEcccchhcccCChhHHHHHH
Q 042373 212 --------------------------VRRGRMIDLLCKNGVKITNLTRV-------TYLVLDEADRMFDMGFEPQITRIV 258 (494)
Q Consensus 212 --------------------------~TPgrl~dll~~~~~~~~~l~~l-------~~lVlDEaD~ml~~gf~~~i~~Il 258 (494)
++-+.+-.++.++......|..+ .|+|+|||..|- ..++..|+
T Consensus 297 G~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT----pheikTil 372 (436)
T COG1875 297 GTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT----PHELKTIL 372 (436)
T ss_pred CchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC----HHHHHHHH
Confidence 33334445555544443344433 489999998776 45677777
Q ss_pred HhhcCCCcEEEe
Q 042373 259 QNIRPDRQAVLF 270 (494)
Q Consensus 259 ~~l~~~~Q~ilf 270 (494)
.+..++..++++
T Consensus 373 tR~G~GsKIVl~ 384 (436)
T COG1875 373 TRAGEGSKIVLT 384 (436)
T ss_pred HhccCCCEEEEc
Confidence 777655555543
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0012 Score=66.16 Aligned_cols=62 Identities=24% Similarity=0.283 Sum_probs=47.8
Q ss_pred hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 138 KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..|+ .|.+.|..++-.+..|+ |+.-.||=|||++..+|.+-+.+. |..+=|++.+..||..=
T Consensus 73 ~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~---------G~~V~vvT~NdyLA~RD 134 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ---------GKGVHVVTSNDYLAKRD 134 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT---------SS-EEEEESSHHHHHHH
T ss_pred HcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh---------cCCcEEEeccHHHhhcc
Confidence 3555 79999999998887777 999999999999999888877664 56788889999998763
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0021 Score=71.39 Aligned_cols=120 Identities=23% Similarity=0.255 Sum_probs=77.6
Q ss_pred ChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh------------
Q 042373 145 VAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV------------ 212 (494)
Q Consensus 145 tpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~------------ 212 (494)
...|+.|+-.++..+-+++.++.|||||... .-++..+....+ ...++.+++.+||-.-|..+.
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~---~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~ 222 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSP---KQGKLRIALAAPTGKAAARLAESLRKAVKNLAA 222 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhcc---ccCCCcEEEECCcHHHHHHHHHHHHhhhccccc
Confidence 4799999999999999999999999999643 233333332211 011357899999966555431
Q ss_pred ----------hhhHHHHHHHhcCc--c----eecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 213 ----------RRGRMIDLLCKNGV--K----ITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 213 ----------TPgrl~dll~~~~~--~----~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
+...+..+|..... . ..+...+++||||||-++- .+.+..+++.+++..++|++.=
T Consensus 223 ~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~rlIlvGD 294 (586)
T TIGR01447 223 AEALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNTKLILLGD 294 (586)
T ss_pred chhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCCEEEEECC
Confidence 01223334432211 0 0123357899999997433 4578888999999989888753
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0033 Score=71.83 Aligned_cols=130 Identities=18% Similarity=0.183 Sum_probs=77.8
Q ss_pred CCHHHHHHHHhCCCCCCChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchh
Q 042373 128 LTTKILETFSKLNHENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE 206 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTre 206 (494)
+++..+...-..++ .+++-|..|+-.++.+ +-+++.++.|+|||.. +-.+..++... |..+++++||--
T Consensus 338 ~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~~~-------g~~V~~~ApTg~ 407 (744)
T TIGR02768 338 VSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWEAA-------GYRVIGAALSGK 407 (744)
T ss_pred CCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHHhC-------CCeEEEEeCcHH
Confidence 34443333322333 5899999999999875 5668889999999954 32333333321 667999999987
Q ss_pred HHHhhh----hh-hHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhh-cCCCcEEEec
Q 042373 207 LVRQQV----RR-GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI-RPDRQAVLFS 271 (494)
Q Consensus 207 La~Qi~----TP-grl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l-~~~~Q~ilfS 271 (494)
-|..+. .+ ..+..++..-......+...++||||||-++-. .++..++... +...++|++.
T Consensus 408 Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 408 AAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEAGMVGS----RQMARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred HHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECcccCCH----HHHHHHHHHHHhcCCEEEEEC
Confidence 776651 00 112222221001122466889999999986542 3455566533 3566776665
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0017 Score=64.66 Aligned_cols=106 Identities=18% Similarity=0.111 Sum_probs=58.2
Q ss_pred HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh---hhhHHHHHHHhcCcceecc
Q 042373 155 IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV---RRGRMIDLLCKNGVKITNL 231 (494)
Q Consensus 155 il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~---TPgrl~dll~~~~~~~~~l 231 (494)
+-.+++++++||+|+|||....--. ..+... |-.+++ ....+|+.++. ..+.+.+.+. .+
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~-~~a~~~--------g~~v~f-~t~~~l~~~l~~~~~~~~~~~~l~-------~l 157 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLG-IRACQA--------GHRVLF-ATAAQWVARLAAAHHAGRLQAELV-------KL 157 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHH-HHHHHC--------CCchhh-hhHHHHHHHHHHHHhcCcHHHHHH-------Hh
Confidence 3467899999999999996544322 333221 334444 44455666552 1122222222 25
Q ss_pred cceEEEEEcccchhcccCC-hhHHHHHHHhhcCCCcEEEecCCCChH
Q 042373 232 TRVTYLVLDEADRMFDMGF-EPQITRIVQNIRPDRQAVLFSPTFPPR 277 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf-~~~i~~Il~~l~~~~Q~ilfSAT~~~~ 277 (494)
.+..+|||||+|.+..... ...+..++...-....+|+.|..-+..
T Consensus 158 ~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~ 204 (254)
T PRK06526 158 GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGR 204 (254)
T ss_pred ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHH
Confidence 6678999999997642211 223444544332334566666665443
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.001 Score=74.63 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=54.8
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------------------------
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------------------- 211 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------------------- 211 (494)
..+-+++-+.||+|||.-|.--+|..+..+.... ...+.+--|+|-.+.-+
T Consensus 392 dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~----~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa 467 (1282)
T KOG0921|consen 392 ENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA----SFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSA 467 (1282)
T ss_pred cCceeeEeecccccchhHHHHHHHHHHhhccccc----cccceeccccccchHHHHHHHHHhhHHhhccccccccccccc
Confidence 3345567799999999999999999887654211 22355666777665544
Q ss_pred ----------hhhhHHHHHHHhcCcceecccceEEEEEcccch
Q 042373 212 ----------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADR 244 (494)
Q Consensus 212 ----------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ 244 (494)
||-+-++.++.. -++.+.++++||.|.
T Consensus 468 ~prpyg~i~fctvgvllr~~e~------glrg~sh~i~deihe 504 (1282)
T KOG0921|consen 468 TPRPYGSIMFCTVGVLLRMMEN------GLRGISHVIIDEIHE 504 (1282)
T ss_pred ccccccceeeeccchhhhhhhh------cccccccccchhhhh
Confidence 556666666654 267788999999995
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0011 Score=75.53 Aligned_cols=95 Identities=22% Similarity=0.272 Sum_probs=69.7
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
+|. .|+++|...--++..| -|+...||-|||+++.+|++-..+. |..+-|++++..||..-
T Consensus 82 lG~-r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~---------GkgVhVVTvNdYLA~RDae~m~~v 149 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALT---------GKGVHVVTVNDYLARRDAEWMGQV 149 (939)
T ss_pred hCC-CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhc---------CCCeEEEeCCHHHHHhHHHHHHHH
Confidence 555 6888887766555544 5889999999999999999876654 66789999999998764
Q ss_pred ------------------------------hhhhHH-----HHHHHhcCcceecccceEEEEEcccchhc
Q 042373 212 ------------------------------VRRGRM-----IDLLCKNGVKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 212 ------------------------------~TPgrl-----~dll~~~~~~~~~l~~l~~lVlDEaD~ml 246 (494)
+|+..| .|.+..... ....+.+.|.||||+|.||
T Consensus 150 y~~LGLtvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~-~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 150 HRFLGLSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDIS-EVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHHhCCeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhccccc-ccccCccceEEEeccccee
Confidence 344443 555543211 1245788999999999976
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0041 Score=62.49 Aligned_cols=134 Identities=10% Similarity=0.109 Sum_probs=72.5
Q ss_pred HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh---hhHHHHHHHhcCcceeccc
Q 042373 156 ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR---RGRMIDLLCKNGVKITNLT 232 (494)
Q Consensus 156 l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T---Pgrl~dll~~~~~~~~~l~ 232 (494)
-.+++++++||+|+|||.... .+...+..+ |-. ++.++..+|..++.. -+.+...+. .+.
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~~--------g~~-v~f~~~~~L~~~l~~a~~~~~~~~~l~-------~l~ 166 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAA-AIGLALIEN--------GWR-VLFTRTTDLVQKLQVARRELQLESAIA-------KLD 166 (269)
T ss_pred hcCceEEEEecCCCcHHHHHH-HHHHHHHHc--------CCc-eeeeeHHHHHHHHHHHHhCCcHHHHHH-------HHh
Confidence 367899999999999995333 233333332 333 455566778776511 011112222 356
Q ss_pred ceEEEEEcccchhcccCC-hhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCccceeeccccccCCCCCCceEEEe
Q 042373 233 RVTYLVLDEADRMFDMGF-EPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSIANSVRARGLDEKELELVIN 311 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~gf-~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILVaTdv~~rGlDi~~v~~VIn 311 (494)
++++|||||.+.+....+ ...+..|+...-....+|+.|..-+.+..... + +-.+++-++.|=+. -.++|.
T Consensus 167 ~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~---~--D~~~a~aildRL~h---~~~~i~ 238 (269)
T PRK08181 167 KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVF---P--DPAMTLAAVDRLVH---HATIFE 238 (269)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHhc---C--CccchhhHHHhhhc---CceEEe
Confidence 788999999987653322 23455555544334455555554443332221 1 23355556666443 345666
Q ss_pred cCC
Q 042373 312 FDA 314 (494)
Q Consensus 312 yd~ 314 (494)
++-
T Consensus 239 ~~g 241 (269)
T PRK08181 239 MNV 241 (269)
T ss_pred cCC
Confidence 654
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00068 Score=77.00 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=48.7
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+|. .|+++|....-.+ .+.-|+...||.|||+++.+|+.-..+. |..+-|++++..||.+-
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~---------G~~VhVvT~NdyLA~RD 133 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT---------GKGVHIVTVNDYLAKRD 133 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc---------CCceEEEeCCHHHHHHH
Confidence 566 5888888765444 4567999999999999999999755443 66799999999999875
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.019 Score=64.25 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=39.6
Q ss_pred ccceeeccccccCCCCCCceEEEecCCCCCH------hHHHhhhccCCCcceEEEEecccC
Q 042373 288 CNLSIANSVRARGLDEKELELVINFDAPNDY------EDYVHHCCQSWLKSCAFRFISEEN 342 (494)
Q Consensus 288 ~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~------~~yvhR~GRaGr~G~aitfv~~~~ 342 (494)
.-.|++|-..+-||++...++||.||+--++ ++-.||+|-. +.=..|.||+...
T Consensus 830 fVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQt-kpVtV~rLItk~T 889 (941)
T KOG0389|consen 830 FVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQT-KPVTVYRLITKST 889 (941)
T ss_pred EEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCc-ceeEEEEEEecCc
Confidence 3457789999999999999999999996654 4444555432 2446788998864
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0024 Score=66.85 Aligned_cols=110 Identities=21% Similarity=0.226 Sum_probs=70.5
Q ss_pred CChhHHHHHHHH------HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---hhh
Q 042373 144 PVAIQAPASALI------ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---VRR 214 (494)
Q Consensus 144 ptpiQ~~aip~i------l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---~TP 214 (494)
+++-|+.++..+ ..+..+++.++-|+|||. ++-.+...+... +..+++++||---|..+ .|-
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~--l~~~i~~~~~~~-------~~~~~~~a~tg~AA~~i~~G~T~ 72 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSF--LIKAIIDYLRSR-------GKKVLVTAPTGIAAFNIPGGRTI 72 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhH--HHHHHHHHhccc-------cceEEEecchHHHHHhccCCcch
Confidence 567788888887 678899999999999985 444444444321 56899999999888776 111
Q ss_pred hHHHH---------H--HHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcC
Q 042373 215 GRMID---------L--LCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP 263 (494)
Q Consensus 215 grl~d---------l--l~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~ 263 (494)
-++.. . +.........|+.+++||+||+-++. ......+...++.+..
T Consensus 73 hs~f~i~~~~~~~~~~~~~~~~~~~~~l~~~~~lIiDEism~~-~~~l~~i~~~lr~i~~ 131 (364)
T PF05970_consen 73 HSFFGIPINNNEKSQCKISKNSRLRERLRKADVLIIDEISMVS-ADMLDAIDRRLRDIRK 131 (364)
T ss_pred HHhcCccccccccccccccccchhhhhhhhheeeecccccchh-HHHHHHHHHhhhhhhc
Confidence 00000 0 00111112347789999999997544 3445566666665544
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.018 Score=67.70 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=45.7
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccC-----C--CcceEEEEecccCHHHHHHHHHHHH
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQS-----W--LKSCAFRFISEENAIYATDLVKAFE 354 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRa-----G--r~G~aitfv~~~~~~~~~~i~~~l~ 354 (494)
....++||.+|.+--|.|.|.++... .|-|---...+|-+.|. + ..|..+.|+. ....+.+++.
T Consensus 591 ~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g-----l~e~l~~Al~ 661 (962)
T COG0610 591 DDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG-----LKEALKKALK 661 (962)
T ss_pred CCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc-----hHHHHHHHHH
Confidence 56788999999999999999876554 78887666777766662 2 3577777766 4445555544
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0029 Score=55.31 Aligned_cols=19 Identities=37% Similarity=0.212 Sum_probs=12.3
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
.++-++++|++|+|||...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 3567899999999999744
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0077 Score=69.93 Aligned_cols=58 Identities=10% Similarity=0.202 Sum_probs=46.2
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHh---hhccCCC--cceEEEEecccC
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH---HCCQSWL--KSCAFRFISEEN 342 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvh---R~GRaGr--~G~aitfv~~~~ 342 (494)
+..+-.|+||-..+-||++-..+.||.||--.++..=+| |+-|-|. .=.+|-||+.+.
T Consensus 750 SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 750 SDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred CCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 566778999999999999999999999999888877777 4444343 235899999874
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.014 Score=58.61 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=42.2
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhh-hHHHHHHHhcCcceecccceE
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRR-GRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TP-grl~dll~~~~~~~~~l~~l~ 235 (494)
.+..++++|++|+|||... ..+...+..+. +..+++ ++..+|..++... ..+...+ ..+.+++
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~~-------g~~v~y-~~~~~l~~~l~~~~~~~~~~~-------~~~~~~d 179 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRKK-------GVPVLY-FPFVEGFGDLKDDFDLLEAKL-------NRMKKVE 179 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhhc-------CceEEE-EEHHHHHHHHHHHHHHHHHHH-------HHhcCCC
Confidence 3678999999999999532 33444444321 334444 4556666554211 1111111 2367889
Q ss_pred EEEEcccch
Q 042373 236 YLVLDEADR 244 (494)
Q Consensus 236 ~lVlDEaD~ 244 (494)
+||||+++.
T Consensus 180 lLiIDDl~~ 188 (266)
T PRK06921 180 VLFIDDLFK 188 (266)
T ss_pred EEEEecccc
Confidence 999999954
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.028 Score=59.99 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=37.1
Q ss_pred CCCCChhHHHHHHHHH-cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc
Q 042373 141 HENPVAIQAPASALII-SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT 204 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il-~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT 204 (494)
+..+.|.|...+-..+ .|--+++.-.-|-|||+-.+- +...+... .| .||+||.
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla--IA~yyraE-------wp-lliVcPA 250 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA--IARYYRAE-------WP-LLIVCPA 250 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH--HHHHHhhc-------Cc-EEEEecH
Confidence 4567899999877655 566788889999999986653 33333221 33 5888886
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0017 Score=61.19 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=52.8
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh---hhHHHHHHHhcCcceecccc
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR---RGRMIDLLCKNGVKITNLTR 233 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T---Pgrl~dll~~~~~~~~~l~~ 233 (494)
.++++++.|++|+|||.... .+...+... |..+ +.+++.+|...+-. .+...+.+. .+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~-ai~~~~~~~--------g~~v-~f~~~~~L~~~l~~~~~~~~~~~~~~-------~l~~ 108 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAV-AIANEAIRK--------GYSV-LFITASDLLDELKQSRSDGSYEELLK-------RLKR 108 (178)
T ss_dssp C--EEEEEESTTSSHHHHHH-HHHHHHHHT--------T--E-EEEEHHHHHHHHHCCHCCTTHCHHHH-------HHHT
T ss_pred cCeEEEEEhhHhHHHHHHHH-HHHHHhccC--------Ccce-eEeecCceeccccccccccchhhhcC-------cccc
Confidence 57899999999999997644 344445442 3344 44567788877611 111212222 3667
Q ss_pred eEEEEEcccchhcccC-ChhHHHHHHHhhcCCCcEEEecCC
Q 042373 234 VTYLVLDEADRMFDMG-FEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 234 l~~lVlDEaD~ml~~g-f~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
+++|||||.-..-... ....+..|+...-....+|+.|--
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhcccCeEeeCCC
Confidence 8999999986432111 122233344333223456665553
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.002 Score=70.44 Aligned_cols=160 Identities=23% Similarity=0.227 Sum_probs=95.2
Q ss_pred HHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh--
Q 042373 135 TFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV-- 212 (494)
Q Consensus 135 ~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~-- 212 (494)
.+...|+.++..-|..|+..+|+..=.|+++|+|+|||..-.- |+.|+..+. ...+|+.+|+.--+.|++
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~-IVyhl~~~~-------~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQH-------AGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHH-HHHHHHHhc-------CCceEEEcccchhHHHHHHH
Confidence 3445678899999999999999999899999999999987654 444554432 456899999988777762
Q ss_pred ---hhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----
Q 042373 213 ---RRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----- 284 (494)
Q Consensus 213 ---TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----- 284 (494)
|--++++++.+... ..-+.+.+|-+-+-++..+. +.++.+.+.-. ..-.+|..=......+.+.
T Consensus 474 Ih~tgLKVvRl~aksRE--~~~S~vs~L~lh~~~~~~~~---pELq~l~klkd---e~gelS~sD~~k~~~lk~~~e~el 545 (935)
T KOG1802|consen 474 IHKTGLKVVRLCAKSRE--DIESDVSFLSLHEQLRNMDK---PELQKLLKLKD---EGGELSSSDEKKYRKLKRAAEKEL 545 (935)
T ss_pred HHhcCceEeeeehhhhh--hccCCccHHHHHHHHhccCc---HHHHHHHhhhh---hcccccchhhHHHHHHHHHHHHHH
Confidence 33333444433211 12345556654444443322 55555544321 1122333222222222222
Q ss_pred cCCccceeeccccccC--CCCCCceEEE
Q 042373 285 TNVCNLSIANSVRARG--LDEKELELVI 310 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rG--lDi~~v~~VI 310 (494)
-...+|+.||.+.+-+ |+.-.++.|+
T Consensus 546 l~~AdVIccTcv~Agd~rl~~~kfr~VL 573 (935)
T KOG1802|consen 546 LNQADVICCTCVGAGDRRLSKFKFRTVL 573 (935)
T ss_pred HhhcCEEEEecccccchhhccccccEEE
Confidence 5677888888887644 4443444454
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0047 Score=58.69 Aligned_cols=95 Identities=16% Similarity=0.135 Sum_probs=53.1
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc---chhHHHhhh-------------hhhHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP---TGELVRQQV-------------RRGRMIDLLC 222 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P---TreLa~Qi~-------------TPgrl~dll~ 222 (494)
.=.++.++.|+|||...+- ++.++... +.+++|+.| +|....+++ .+..+.+.+.
T Consensus 3 ~i~litG~~GsGKTT~~l~-~~~~~~~~--------g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~ 73 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQ-RAYNYEER--------GMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIE 73 (190)
T ss_pred EEEEEECCCCCHHHHHHHH-HHHHHHHc--------CCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHH
Confidence 3467889999999965443 34333221 557788877 244322221 1222333332
Q ss_pred hcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 223 KNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 223 ~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
. .-.+.++||+||++.+- .+++..+++.+.+....+++++
T Consensus 74 ~------~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tg 113 (190)
T PRK04296 74 E------EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYG 113 (190)
T ss_pred h------hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEe
Confidence 2 12367899999997542 3456667777555444555544
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.015 Score=58.41 Aligned_cols=102 Identities=12% Similarity=0.167 Sum_probs=56.8
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh-hh-----hHHHHHHHhcCcceeccc
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV-RR-----GRMIDLLCKNGVKITNLT 232 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~-TP-----grl~dll~~~~~~~~~l~ 232 (494)
..++++|++|+|||.... .+.+.+..+ +.. ++..+..+|...+. +- ....+++. .+.
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~--------~~~-v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~-------~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEK--------GVP-VIFVNFPQLLNRIKSTYKSSGKEDENEIIR-------SLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHc--------CCe-EEEEEHHHHHHHHHHHHhccccccHHHHHH-------Hhc
Confidence 459999999999996433 466666543 223 34445666665541 10 00111121 256
Q ss_pred ceEEEEEcccch--hcccCChhHHHHHHHhh-cCCCcEEEecCCCChHH
Q 042373 233 RVTYLVLDEADR--MFDMGFEPQITRIVQNI-RPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 233 ~l~~lVlDEaD~--ml~~gf~~~i~~Il~~l-~~~~Q~ilfSAT~~~~v 278 (494)
+.++||||+++. ..++. ...+..|+... .....+|+.|..-+.++
T Consensus 178 ~~dlLviDDlg~e~~t~~~-~~~l~~iin~r~~~~~~~IiTsN~~~~eL 225 (268)
T PRK08116 178 NADLLILDDLGAERDTEWA-REKVYNIIDSRYRKGLPTIVTTNLSLEEL 225 (268)
T ss_pred CCCEEEEecccCCCCCHHH-HHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 778999999954 33332 33444555543 34566766666554444
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0033 Score=59.95 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=44.5
Q ss_pred CChhHHHHHHHHHcCCC-EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 144 PVAIQAPASALIISGLD-SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 144 ptpiQ~~aip~il~grd-vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+.+-|..|+-.+++... .++.||.|||||.. +.-++..+...........+..+||++||..-+.++
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~ 69 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNI 69 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHH
Confidence 57889999999999998 99999999999943 334555552110000012267899999999998876
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.011 Score=51.23 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=18.2
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l 183 (494)
++.+++.|++|+|||. .+.-+...+
T Consensus 19 ~~~v~i~G~~G~GKT~-l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTT-LARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHH-HHHHHHHHh
Confidence 6889999999999995 333344333
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.018 Score=67.83 Aligned_cols=132 Identities=16% Similarity=0.082 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch
Q 042373 127 GLTTKILETFSKLNHENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG 205 (494)
Q Consensus 127 ~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr 205 (494)
++++..+......++ .+++-|..++-.+..+ +=++++++-|+|||... -++...+... |..++.++||-
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~~--------G~~V~g~ApTg 435 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEAA--------GYRVVGGALAG 435 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHHc--------CCeEEEEcCcH
Confidence 344555554444443 6899999999988654 55788899999999633 2333333221 66889999997
Q ss_pred hHHHhh----hhhh-HHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhc-CCCcEEEecC
Q 042373 206 ELVRQQ----VRRG-RMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIR-PDRQAVLFSP 272 (494)
Q Consensus 206 eLa~Qi----~TPg-rl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~-~~~Q~ilfSA 272 (494)
--|..+ +.+. .+..++..-......+..-++||||||-++- ..++..++..+. ...++||+.=
T Consensus 436 kAA~~L~e~~Gi~a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~~~garvVLVGD 504 (1102)
T PRK13826 436 KAAEGLEKEAGIQSRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMALFVEAVTRAGAKLVLVGD 504 (1102)
T ss_pred HHHHHHHHhhCCCeeeHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHHHHHHHHhcCCEEEEECC
Confidence 776655 1111 1223221110112346677899999998543 356667777764 5677777654
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.004 Score=70.87 Aligned_cols=67 Identities=19% Similarity=0.172 Sum_probs=52.4
Q ss_pred CCCCCCChhHHHHHHHH----HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASALI----ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~i----l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+-|..+.|.|.+.+-.+ ..|.++++.||||+|||++-+.|.+..+...+ ..++.++.+.|..=..|+
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~------~~~kIiy~sRThsQl~q~ 76 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP------EVRKIIYASRTHSQLEQA 76 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc------ccccEEEEcccchHHHHH
Confidence 34666799998876554 47899999999999999999999999875432 146788888887766664
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0055 Score=49.62 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=35.1
Q ss_pred HHHHHcCCCE-EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 152 SALIISGLDS-VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 152 ip~il~grdv-i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
|-..+++..+ ++.++.|||||...+--+...+.... .. +..+||++||+..+..+
T Consensus 3 v~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~----~~-~~~vlv~a~t~~aa~~l 58 (76)
T PF13245_consen 3 VRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA----DP-GKRVLVLAPTRAAADEL 58 (76)
T ss_pred HHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc----CC-CCeEEEECCCHHHHHHH
Confidence 4433445554 55999999999655444444432111 11 45799999999999875
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.013 Score=58.32 Aligned_cols=99 Identities=15% Similarity=0.200 Sum_probs=56.0
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh---hh-HHHHHHHhcCcceecccc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR---RG-RMIDLLCKNGVKITNLTR 233 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T---Pg-rl~dll~~~~~~~~~l~~ 233 (494)
..++++.|++|+|||.. +..+...+..+ +.. ++.++..+|..++-. .+ ...+++ -.+.+
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~~--------g~~-v~~i~~~~l~~~l~~~~~~~~~~~~~l-------~~l~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLAK--------GRS-VIVVTVPDVMSRLHESYDNGQSGEKFL-------QELCK 163 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHc--------CCC-eEEEEHHHHHHHHHHHHhccchHHHHH-------HHhcC
Confidence 36899999999999953 23344444432 333 455566777776511 00 111222 23678
Q ss_pred eEEEEEcccchhcccCC-hhHHHHHHHhh-cCCCcEEEecCC
Q 042373 234 VTYLVLDEADRMFDMGF-EPQITRIVQNI-RPDRQAVLFSPT 273 (494)
Q Consensus 234 l~~lVlDEaD~ml~~gf-~~~i~~Il~~l-~~~~Q~ilfSAT 273 (494)
+++|||||++......+ ...+..|+..- .....+++.|--
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999999965543222 22344444433 345677776654
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0088 Score=58.51 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=54.2
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
..++++||+|+|||... ..+.+.+..+ +..++++.-.. .. ...+ +.+. .+.+.++||
T Consensus 40 ~~l~l~G~~G~GKThL~-~ai~~~~~~~--------~~~~~y~~~~~-~~--~~~~----~~~~-------~~~~~dlLi 96 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLL-KAVSNHYLLN--------QRTAIYIPLSK-SQ--YFSP----AVLE-------NLEQQDLVC 96 (229)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHc--------CCCeEEeeHHH-hh--hhhH----HHHh-------hcccCCEEE
Confidence 34789999999999532 2233333322 44566655431 11 1111 1222 255778999
Q ss_pred Ecccchhccc-CChhHHHHHHHhhcC-CCcEEEecCCCChH
Q 042373 239 LDEADRMFDM-GFEPQITRIVQNIRP-DRQAVLFSPTFPPR 277 (494)
Q Consensus 239 lDEaD~ml~~-gf~~~i~~Il~~l~~-~~Q~ilfSAT~~~~ 277 (494)
+||+|.+... .+...+..++..+.. +.+++++|++.++.
T Consensus 97 lDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 97 LDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred EeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 9999988633 233455566665543 34566777766544
|
|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.007 Score=65.90 Aligned_cols=61 Identities=23% Similarity=0.223 Sum_probs=48.0
Q ss_pred CCCChhHHHHHHHHHcCCCE-EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 142 ENPVAIQAPASALIISGLDS-VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdv-i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..+.+-|.+|+...++.+++ ++++|+|+|||.....-+.+.+.. +.++||..||++-+.-+
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---------~k~VLVcaPSn~AVdNi 245 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---------KKRVLVCAPSNVAVDNI 245 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---------CCeEEEEcCchHHHHHH
Confidence 36788999999999988765 666999999998876655554433 56899999998877665
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0093 Score=58.51 Aligned_cols=94 Identities=15% Similarity=0.083 Sum_probs=51.1
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
..++++|++|+|||-... .+...+..+ +.+++++. ..++.. .+.+.+. .+.++.+||
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~~~--------~~~~~y~~-~~~~~~------~~~~~~~-------~l~~~dlLi 98 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAEQA--------GRSSAYLP-LQAAAG------RLRDALE-------ALEGRSLVA 98 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHc--------CCcEEEEe-HHHhhh------hHHHHHH-------HHhcCCEEE
Confidence 458999999999995322 333333322 45666654 334332 2223332 245678999
Q ss_pred EcccchhcccC-ChhHHHHHHHhhcC-CCcEEEecCCCC
Q 042373 239 LDEADRMFDMG-FEPQITRIVQNIRP-DRQAVLFSPTFP 275 (494)
Q Consensus 239 lDEaD~ml~~g-f~~~i~~Il~~l~~-~~Q~ilfSAT~~ 275 (494)
+||+|.+.... ....+..++..+.. ..++|+.|...|
T Consensus 99 IDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p 137 (233)
T PRK08727 99 LDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMP 137 (233)
T ss_pred EeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCCh
Confidence 99999886432 22234444444432 334444444333
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.011 Score=58.21 Aligned_cols=95 Identities=17% Similarity=0.255 Sum_probs=55.3
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
+.++++|++|+|||-. +-.+...+..+ +..++++. ..++.... .+++. .+.++++||
T Consensus 46 ~~l~l~G~~G~GKTHL-l~a~~~~~~~~--------~~~v~y~~-~~~~~~~~------~~~~~-------~~~~~d~Li 102 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL-LQAACLRFEQR--------GEPAVYLP-LAELLDRG------PELLD-------NLEQYELVC 102 (234)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHhC--------CCcEEEee-HHHHHhhh------HHHHH-------hhhhCCEEE
Confidence 5688999999999964 33334444321 44566654 45555431 11221 245667999
Q ss_pred Ecccchhccc-CChhHHHHHHHhhcCCCcEEEecCCCCh
Q 042373 239 LDEADRMFDM-GFEPQITRIVQNIRPDRQAVLFSPTFPP 276 (494)
Q Consensus 239 lDEaD~ml~~-gf~~~i~~Il~~l~~~~Q~ilfSAT~~~ 276 (494)
+|++|.+... .+...+..+++.+......++++++.++
T Consensus 103 iDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 103 LDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred EechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 9999977533 3345577777766543333455555443
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.022 Score=59.02 Aligned_cols=110 Identities=11% Similarity=0.108 Sum_probs=58.9
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEE
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.+++++++|+||+|||... ..+...+... +..+ +..+..+|..++.. .++-.-... ....-.+.++++
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l~~~--------g~~V-~y~t~~~l~~~l~~-~~~~~~~~~-~~~~~~l~~~DL 249 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKELLDR--------GKSV-IYRTADELIEILRE-IRFNNDKEL-EEVYDLLINCDL 249 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHHC--------CCeE-EEEEHHHHHHHHHH-HHhccchhH-HHHHHHhccCCE
Confidence 3589999999999999632 3444445432 3344 44566777665421 000000000 000124678899
Q ss_pred EEEcccchhcccCC-hhHHHHHHHhh-cCCCcEEEecCCCChHH
Q 042373 237 LVLDEADRMFDMGF-EPQITRIVQNI-RPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 237 lVlDEaD~ml~~gf-~~~i~~Il~~l-~~~~Q~ilfSAT~~~~v 278 (494)
||||+.+......| ...+..|+... .....+|+.|.--+.++
T Consensus 250 LIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 250 LIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred EEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 99999987643333 23455555443 33455655555444443
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.032 Score=55.28 Aligned_cols=104 Identities=16% Similarity=0.214 Sum_probs=60.2
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh-hh----hHHHHHHHhcCcceecccc
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV-RR----GRMIDLLCKNGVKITNLTR 233 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~-TP----grl~dll~~~~~~~~~l~~ 233 (494)
..+++++++|+|||.... .+..++... +..++++ +..+|...+. +- ....+++. .+.+
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~~--------g~~v~~i-t~~~l~~~l~~~~~~~~~~~~~~l~-------~l~~ 162 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLLR--------GKSVLII-TVADIMSAMKDTFSNSETSEEQLLN-------DLSN 162 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHhc--------CCeEEEE-EHHHHHHHHHHHHhhccccHHHHHH-------Hhcc
Confidence 479999999999996433 445555432 3344444 5666665431 10 00111221 2567
Q ss_pred eEEEEEcccchhcccCChh-HHHHHHHh-hcCCCcEEEecCCCChHHH
Q 042373 234 VTYLVLDEADRMFDMGFEP-QITRIVQN-IRPDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 234 l~~lVlDEaD~ml~~gf~~-~i~~Il~~-l~~~~Q~ilfSAT~~~~v~ 279 (494)
+++|||||++......+.. .+..|+.. ......+++.|.--+.++.
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 8999999999876444433 34445543 3345777777765554444
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.015 Score=49.89 Aligned_cols=76 Identities=21% Similarity=0.190 Sum_probs=41.7
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh------------------hhhhhHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ------------------QVRRGRMID 219 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q------------------i~TPgrl~d 219 (494)
++.+++++|+|||||..... ++..+... +..++++.+....... ......+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPP--------GGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALA 72 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCC--------CCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHH
Confidence 56789999999999973322 22222110 1246777666433211 011122222
Q ss_pred HHHhcCcceecccceEEEEEcccchhcccCC
Q 042373 220 LLCKNGVKITNLTRVTYLVLDEADRMFDMGF 250 (494)
Q Consensus 220 ll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf 250 (494)
.... ....++++||++++.....
T Consensus 73 ~~~~--------~~~~viiiDei~~~~~~~~ 95 (148)
T smart00382 73 LARK--------LKPDVLILDEITSLLDAEQ 95 (148)
T ss_pred HHHh--------cCCCEEEEECCcccCCHHH
Confidence 2222 1258999999999886543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.026 Score=57.32 Aligned_cols=74 Identities=15% Similarity=0.067 Sum_probs=49.9
Q ss_pred ccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHH----------cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCC
Q 042373 124 RQTGLTTKILETFSKLNHENPVAIQAPASALII----------SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGD 193 (494)
Q Consensus 124 ~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il----------~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~ 193 (494)
-.+.|++.++. .| .++..|.+++-... .++-.++--.||.||-..-.--|+.+++..
T Consensus 24 y~~~lp~~~~~----~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G------- 90 (303)
T PF13872_consen 24 YRLHLPEEVID----SG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG------- 90 (303)
T ss_pred cccCCCHHHHh----cc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------
Confidence 34567776554 22 46888888876554 235667778999999876666677777653
Q ss_pred CCCeEEEEccchhHHHhh
Q 042373 194 DSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 194 ~~p~aLIl~PTreLa~Qi 211 (494)
..++|.++.+..|-...
T Consensus 91 -r~r~vwvS~s~dL~~Da 107 (303)
T PF13872_consen 91 -RKRAVWVSVSNDLKYDA 107 (303)
T ss_pred -CCceEEEECChhhhhHH
Confidence 33588888887776554
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.018 Score=57.33 Aligned_cols=101 Identities=14% Similarity=0.184 Sum_probs=57.8
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcC--cceec-ccc
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNG--VKITN-LTR 233 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~--~~~~~-l~~ 233 (494)
++.++++.|++|+|||..... +-..+.. ...-++++++-+|+.++. .....+. ..+.. +.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~A-i~~~l~~---------~g~sv~f~~~~el~~~Lk------~~~~~~~~~~~l~~~l~~ 167 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIA-IGNELLK---------AGISVLFITAPDLLSKLK------AAFDEGRLEEKLLRELKK 167 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHH---------cCCeEEEEEHHHHHHHHH------HHHhcCchHHHHHHHhhc
Confidence 678999999999999975433 3334432 235677788999998762 1111100 01123 778
Q ss_pred eEEEEEcccchhcccCC-hhHHHHHHHhhcCCCcEEEecCC
Q 042373 234 VTYLVLDEADRMFDMGF-EPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 234 l~~lVlDEaD~ml~~gf-~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
+++|||||.-..-...+ ...+..++.+....+..++.|-.
T Consensus 168 ~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN~ 208 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSLIITSNL 208 (254)
T ss_pred CCEEEEecccCccCCHHHHHHHHHHHHHHHhhccceeecCC
Confidence 89999999875432221 23333444443333333444443
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.021 Score=54.93 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=49.6
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEE
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.++.++++|++|+|||..... +....... +.. ++.++...+... ..+++.. +....+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~-~~~~~~~~--------~~~-~~~i~~~~~~~~------~~~~~~~-------~~~~~l 93 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA-ACAAAEER--------GKS-AIYLPLAELAQA------DPEVLEG-------LEQADL 93 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHHhc--------CCc-EEEEeHHHHHHh------HHHHHhh-------cccCCE
Confidence 357899999999999964332 22222211 222 333444554432 1222221 234468
Q ss_pred EEEcccchhccc-CChhHHHHHHHhhcCCCcEEEecCC
Q 042373 237 LVLDEADRMFDM-GFEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 237 lVlDEaD~ml~~-gf~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
|||||+|.+... .....+..++..+......++++++
T Consensus 94 LvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~ 131 (226)
T TIGR03420 94 VCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGR 131 (226)
T ss_pred EEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 999999987643 2244555555554322223444444
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.05 Score=54.36 Aligned_cols=75 Identities=19% Similarity=0.171 Sum_probs=42.9
Q ss_pred HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh---hhHHHHHHHhcCcceecc
Q 042373 155 IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR---RGRMIDLLCKNGVKITNL 231 (494)
Q Consensus 155 il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T---Pgrl~dll~~~~~~~~~l 231 (494)
+-.|.+++++||+|+|||.....-.. .+... |-.++++ +..+|..++.. .+++...+.. .+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~-~a~~~--------G~~v~~~-~~~~l~~~l~~a~~~~~~~~~~~~------~~ 162 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGY-EAVRA--------GIKVRFT-TAADLLLQLSTAQRQGRYKTTLQR------GV 162 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHH-HHHHc--------CCeEEEE-eHHHHHHHHHHHHHCCcHHHHHHH------Hh
Confidence 44588999999999999964432222 22211 4445554 45566655411 1222222221 13
Q ss_pred cceEEEEEcccchh
Q 042373 232 TRVTYLVLDEADRM 245 (494)
Q Consensus 232 ~~l~~lVlDEaD~m 245 (494)
....++|+||++.+
T Consensus 163 ~~~dlLiiDdlg~~ 176 (259)
T PRK09183 163 MAPRLLIIDEIGYL 176 (259)
T ss_pred cCCCEEEEcccccC
Confidence 45679999999864
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.017 Score=50.21 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=40.6
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEEEE
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
++++||.|+|||...- -+.+.+ +...+.+.. .++.... .+...+.+++.... ....-.+|+
T Consensus 1 ill~G~~G~GKT~l~~-~la~~l-----------~~~~~~i~~-~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~vl~ 63 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR-ALAQYL-----------GFPFIEIDG-SELISSYAGDSEQKIRDFFKKAK----KSAKPCVLF 63 (132)
T ss_dssp EEEESSTTSSHHHHHH-HHHHHT-----------TSEEEEEET-THHHTSSTTHHHHHHHHHHHHHH----HTSTSEEEE
T ss_pred CEEECcCCCCeeHHHH-HHHhhc-----------ccccccccc-ccccccccccccccccccccccc----ccccceeee
Confidence 6899999999996322 222222 223333333 3333221 33445556655421 111358999
Q ss_pred EcccchhcccC
Q 042373 239 LDEADRMFDMG 249 (494)
Q Consensus 239 lDEaD~ml~~g 249 (494)
+||+|.+....
T Consensus 64 iDe~d~l~~~~ 74 (132)
T PF00004_consen 64 IDEIDKLFPKS 74 (132)
T ss_dssp EETGGGTSHHC
T ss_pred eccchhccccc
Confidence 99999998765
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.052 Score=56.32 Aligned_cols=53 Identities=21% Similarity=0.279 Sum_probs=40.2
Q ss_pred cceEEEEEcccchhc-ccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 232 TRVTYLVLDEADRMF-DMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml-~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
...++|++|.+.++. +..+...+..+...+.++.-+++++||........++.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~ 274 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE 274 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH
Confidence 456799999999986 34566778888887888888889999987765554443
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.01 Score=59.41 Aligned_cols=70 Identities=21% Similarity=0.140 Sum_probs=49.7
Q ss_pred CChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHH
Q 042373 144 PVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLC 222 (494)
Q Consensus 144 ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~ 222 (494)
+|+-|.++|-. ...++++.|..|||||.+.+--++..+.... ......|+|++|+..|..+ -.|+...+.
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~--~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEM--RERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHH--HHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHH--HHHHHHhcC
Confidence 47889998877 6889999999999999987766666665432 1134699999999999886 234444444
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.083 Score=51.40 Aligned_cols=151 Identities=14% Similarity=0.182 Sum_probs=78.2
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh---hhhHHHHHHHhcCcceecccceEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV---RRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~---TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
-++++|++|+|||- .+-.+...+....+ +.+++++.. .++...+. ..+.+.++.. .+..+++
T Consensus 36 ~l~l~G~~G~GKTH-LL~Ai~~~~~~~~~------~~~v~y~~~-~~f~~~~~~~~~~~~~~~~~~-------~~~~~Dl 100 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH-LLQAIANEAQKQHP------GKRVVYLSA-EEFIREFADALRDGEIEEFKD-------RLRSADL 100 (219)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHHHCT------TS-EEEEEH-HHHHHHHHHHHHTTSHHHHHH-------HHCTSSE
T ss_pred ceEEECCCCCCHHH-HHHHHHHHHHhccc------cccceeecH-HHHHHHHHHHHHcccchhhhh-------hhhcCCE
Confidence 48999999999997 34455555543211 445666543 34443321 0122222222 3668899
Q ss_pred EEEcccchhcccC-ChhHHHHHHHhhc-CCCcEEEecCCCChHHHHHHHhcCCccceeeccccccCCCCCCceEEEecCC
Q 042373 237 LVLDEADRMFDMG-FEPQITRIVQNIR-PDRQAVLFSPTFPPRVEILARKTNVCNLSIANSVRARGLDEKELELVINFDA 314 (494)
Q Consensus 237 lVlDEaD~ml~~g-f~~~i~~Il~~l~-~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILVaTdv~~rGlDi~~v~~VInyd~ 314 (494)
|+||.+|.+.... ....+..+++.+. .+.|+|+.|...|..+
T Consensus 101 L~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l------------------------------------ 144 (219)
T PF00308_consen 101 LIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL------------------------------------ 144 (219)
T ss_dssp EEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT------------------------------------
T ss_pred EEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc------------------------------------
Confidence 9999999987532 2344555555542 3445544444433211
Q ss_pred CCCHhHHHhhhccCCCcceEEEEecccCHHHHHHHHHHHHhccCcchHHHH
Q 042373 315 PNDYEDYVHHCCQSWLKSCAFRFISEENAIYATDLVKAFELSELVVRDDLK 365 (494)
Q Consensus 315 P~s~~~yvhR~GRaGr~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~ 365 (494)
..-...++=|.+ .|.++.+-.+++.....-+.+.....+-.+|++..
T Consensus 145 ~~~~~~L~SRl~----~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~ 191 (219)
T PF00308_consen 145 SGLLPDLRSRLS----WGLVVELQPPDDEDRRRILQKKAKERGIELPEEVI 191 (219)
T ss_dssp TTS-HHHHHHHH----CSEEEEE----HHHHHHHHHHHHHHTT--S-HHHH
T ss_pred cccChhhhhhHh----hcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHH
Confidence 111223444442 56777777777766666677777777777776553
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.026 Score=59.91 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=55.2
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh---hhHHHHHHHhcCcceecccceE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR---RGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T---Pgrl~dll~~~~~~~~~l~~l~ 235 (494)
..++++|++|+|||... ..+...+..+.+ +..++++. ..++..++.. .+.+..+.. .+.+++
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~------~~~v~yi~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~d 201 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNP------NAKVVYVS-SEKFTNDFVNALRNNKMEEFKE-------KYRSVD 201 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCC------CCcEEEEE-HHHHHHHHHHHHHcCCHHHHHH-------HHHhCC
Confidence 45789999999999643 344555543211 34566654 4444443210 001111111 245678
Q ss_pred EEEEcccchhcccC-ChhHHHHHHHhh-cCCCcEEEecCCCChHH
Q 042373 236 YLVLDEADRMFDMG-FEPQITRIVQNI-RPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 236 ~lVlDEaD~ml~~g-f~~~i~~Il~~l-~~~~Q~ilfSAT~~~~v 278 (494)
+|||||+|.+.... ....+..++..+ ..+.++++.|...|..+
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l 246 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKEL 246 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHH
Confidence 99999999876432 123344455444 34566655444444433
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.2 Score=55.18 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=69.0
Q ss_pred ceeccCCCCCCCCCcccCC-CCHHHHHHHHhC-CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcC
Q 042373 109 LKIREKCAPKPIKTWRQTG-LTTKILETFSKL-NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186 (494)
Q Consensus 109 i~v~g~~~P~pi~~f~~l~-L~~~ll~~l~~~-g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~ 186 (494)
..+.|...|.+-.+|+++| ++..+.+.+.-. -+..|-.++.--+ .=-|-+|+++|+|+|||.. .+.+...
T Consensus 175 ~~~~~~~~~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv---~PprGvLlHGPPGCGKT~l-----A~AiAge 246 (802)
T KOG0733|consen 175 QFVEGLEFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGV---RPPRGVLLHGPPGCGKTSL-----ANAIAGE 246 (802)
T ss_pred hhhcccCCCCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCC---CCCCceeeeCCCCccHHHH-----HHHHhhh
Confidence 4466666676667899997 444444333221 1455555444321 1138999999999999962 2222111
Q ss_pred CCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 187 PPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 187 ~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
. + .=++=++--|++.++ .+-.++.+++..... ..-++|++||.|.+.-
T Consensus 247 l-------~-vPf~~isApeivSGvSGESEkkiRelF~~A~~-----~aPcivFiDeIDAI~p 296 (802)
T KOG0733|consen 247 L-------G-VPFLSISAPEIVSGVSGESEKKIRELFDQAKS-----NAPCIVFIDEIDAITP 296 (802)
T ss_pred c-------C-CceEeecchhhhcccCcccHHHHHHHHHHHhc-----cCCeEEEeeccccccc
Confidence 1 1 123444555677776 456677777765321 1236889999999874
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.029 Score=55.09 Aligned_cols=96 Identities=11% Similarity=0.124 Sum_probs=50.6
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYL 237 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~l 237 (494)
++.++++||+|+|||-... .+.+.+..+ +..++++.- .+.... . .+++. .+.++++|
T Consensus 45 ~~~l~l~Gp~G~GKThLl~-a~~~~~~~~--------~~~v~y~~~-~~~~~~--~----~~~~~-------~~~~~dll 101 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLH-AACAELSQR--------GRAVGYVPL-DKRAWF--V----PEVLE-------GMEQLSLV 101 (235)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHhC--------CCeEEEEEH-HHHhhh--h----HHHHH-------HhhhCCEE
Confidence 3679999999999995332 233333321 445555543 222211 1 12221 13345789
Q ss_pred EEcccchhccc-CChhHHHHHHHhhcC-CCcEEEecCCCCh
Q 042373 238 VLDEADRMFDM-GFEPQITRIVQNIRP-DRQAVLFSPTFPP 276 (494)
Q Consensus 238 VlDEaD~ml~~-gf~~~i~~Il~~l~~-~~Q~ilfSAT~~~ 276 (494)
++||+|.+... .+...+..++..+.. +...+++|++.|+
T Consensus 102 iiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 102 CIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred EEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 99999988642 234455566655432 2223444444444
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.065 Score=53.35 Aligned_cols=90 Identities=21% Similarity=0.232 Sum_probs=47.7
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.++++.||+|+|||...-+ +...+...... ....++.+....|..+. .+..++.+++.... -.+
T Consensus 43 ~~vll~GppGtGKTtlA~~-ia~~l~~~~~~-----~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~--------~~V 108 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI-LGKLFKEMNVL-----SKGHLIEVERADLVGEYIGHTAQKTREVIKKAL--------GGV 108 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH-HHHHHHhcCcc-----cCCceEEecHHHhhhhhccchHHHHHHHHHhcc--------CCE
Confidence 5789999999999964432 22222221100 11124444444454332 23444555565421 148
Q ss_pred EEEcccchhcccC---C-hhHHHHHHHhhc
Q 042373 237 LVLDEADRMFDMG---F-EPQITRIVQNIR 262 (494)
Q Consensus 237 lVlDEaD~ml~~g---f-~~~i~~Il~~l~ 262 (494)
|++||+|.|...+ | ...+..++..+.
T Consensus 109 L~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e 138 (261)
T TIGR02881 109 LFIDEAYSLARGGEKDFGKEAIDTLVKGME 138 (261)
T ss_pred EEEechhhhccCCccchHHHHHHHHHHHHh
Confidence 9999999987422 2 234555555543
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.025 Score=57.50 Aligned_cols=83 Identities=14% Similarity=0.278 Sum_probs=47.6
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCC---CCCCeEEEEccchh--------HHHhhhhhh-------HHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPG---DDSPVGLVMAPTGE--------LVRQQVRRG-------RMIDL 220 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~---~~~p~aLIl~PTre--------La~Qi~TPg-------rl~dl 220 (494)
.+++++|+|+.|||. +++++....+.... ..-|..+|-+|... +..+++.|. .+...
T Consensus 62 p~lLivG~snnGKT~-----Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~ 136 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTM-----IIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQ 136 (302)
T ss_pred CceEEecCCCCcHHH-----HHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHH
Confidence 589999999999997 55665543222111 12467777777633 222222221 11111
Q ss_pred HHhcCcceecccceEEEEEcccchhcccCC
Q 042373 221 LCKNGVKITNLTRVTYLVLDEADRMFDMGF 250 (494)
Q Consensus 221 l~~~~~~~~~l~~l~~lVlDEaD~ml~~gf 250 (494)
.. ..+.--.+++||+||+|.++....
T Consensus 137 ~~----~llr~~~vrmLIIDE~H~lLaGs~ 162 (302)
T PF05621_consen 137 VL----RLLRRLGVRMLIIDEFHNLLAGSY 162 (302)
T ss_pred HH----HHHHHcCCcEEEeechHHHhcccH
Confidence 11 112234678999999999996543
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.024 Score=61.14 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=57.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhh---hHHHHHHHhcCcceecccceE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRR---GRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TP---grl~dll~~~~~~~~~l~~l~ 235 (494)
+.++++|++|+|||... -.+...+..+.+ +..++++ +..++..++... +.+..+.. .+++++
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~~------~~~v~yi-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~d 213 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKNP------NAKVVYV-TSEKFTNDFVNALRNNTMEEFKE-------KYRSVD 213 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhCC------CCeEEEE-EHHHHHHHHHHHHHcCcHHHHHH-------HHhcCC
Confidence 46899999999999633 334444443211 3345555 555555443110 11111111 245788
Q ss_pred EEEEcccchhcccC-ChhHHHHHHHhh-cCCCcEEEecCCCChHHH
Q 042373 236 YLVLDEADRMFDMG-FEPQITRIVQNI-RPDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 236 ~lVlDEaD~ml~~g-f~~~i~~Il~~l-~~~~Q~ilfSAT~~~~v~ 279 (494)
+|||||+|.+.... ....+..++..+ ..+.++++.|...|..+.
T Consensus 214 lLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 214 VLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 99999999875432 223444555444 334566665555444443
|
|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.056 Score=65.89 Aligned_cols=120 Identities=22% Similarity=0.218 Sum_probs=74.1
Q ss_pred CCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhh--HHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----hhh
Q 042373 143 NPVAIQAPASALIISG--LDSVAITETGSGKTLAF--LLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----VRR 214 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlaf--llpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----~TP 214 (494)
.+++-|..|+-.++.. +-+++.+..|+|||... ++-++..+... .+..++.++||-.-+..+ +.-
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~-------~g~~V~glAPTgkAa~~L~e~Gi~A 907 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPES-------ERPRVVGLGPTHRAVGEMRSAGVDA 907 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhc-------cCceEEEEechHHHHHHHHHhCchH
Confidence 6899999999999965 77888999999999753 22333322211 156788899997776665 111
Q ss_pred hHHHHHHHhcCc----ceecccceEEEEEcccchhcccCChhHHHHHHHhhcC-CCcEEEecCC
Q 042373 215 GRMIDLLCKNGV----KITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP-DRQAVLFSPT 273 (494)
Q Consensus 215 grl~dll~~~~~----~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~-~~Q~ilfSAT 273 (494)
..+..+|..... ....+...++||||||-++- ..++..++..++. +.++|++.=+
T Consensus 908 ~TIasfL~~~~~~~~~~~~~~~~~~llIVDEASMV~----~~~m~~ll~~~~~~garvVLVGD~ 967 (1623)
T PRK14712 908 QTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVG----NTDMARAYALIAAGGGRAVASGDT 967 (1623)
T ss_pred hhHHHHhccccchhhcccCCCCCCcEEEEEcccccc----HHHHHHHHHhhhhCCCEEEEEcch
Confidence 123333432100 00112346899999998554 3455566666653 5667766543
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.036 Score=49.50 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=14.4
Q ss_pred ccceEEEEEcccchhccc
Q 042373 231 LTRVTYLVLDEADRMFDM 248 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~ 248 (494)
-.+..++|+||++.+++.
T Consensus 83 ~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 83 RGGDDLIILDELTRLVRA 100 (165)
T ss_pred CCCCEEEEEEcHHHHHHH
Confidence 356789999999988754
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.068 Score=54.13 Aligned_cols=75 Identities=23% Similarity=0.221 Sum_probs=39.2
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
+.++++.+|+|||||..... +...+.... ....++ ++.+..-+|..+. .+...+..++... .. .
T Consensus 58 ~~~vll~G~pGTGKT~lA~~-ia~~l~~~g---~~~~~~--~v~v~~~~l~~~~~g~~~~~~~~~~~~a-------~~-g 123 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR-MAQILHRLG---YVRKGH--LVSVTRDDLVGQYIGHTAPKTKEILKRA-------MG-G 123 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH-HHHHHHHcC---Ccccce--EEEecHHHHhHhhcccchHHHHHHHHHc-------cC-c
Confidence 56899999999999965422 111121111 001122 3333334555433 2223334444431 11 5
Q ss_pred EEEEcccchhc
Q 042373 236 YLVLDEADRMF 246 (494)
Q Consensus 236 ~lVlDEaD~ml 246 (494)
+|+|||+|.|.
T Consensus 124 vL~iDEi~~L~ 134 (284)
T TIGR02880 124 VLFIDEAYYLY 134 (284)
T ss_pred EEEEechhhhc
Confidence 89999999884
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.013 Score=59.36 Aligned_cols=114 Identities=16% Similarity=0.141 Sum_probs=60.3
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----hhhhHHHHHHHhcCcceecccc
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-----VRRGRMIDLLCKNGVKITNLTR 233 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-----~TPgrl~dll~~~~~~~~~l~~ 233 (494)
-+.++++|.|+|||-+.++ .-+.++- +... .-+++=++-+-|-...+ -...++....... .-.....
T Consensus 58 p~~LFyGPpGTGKTStala-far~L~~-~~~~----~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~--~~~~~~~ 129 (346)
T KOG0989|consen 58 PHYLFYGPPGTGKTSTALA-FARALNC-EQLF----PCRVLELNASDERGISVVREKIKNFAKLTVLLKRS--DGYPCPP 129 (346)
T ss_pred ceEEeeCCCCCcHhHHHHH-HHHHhcC-cccc----ccchhhhcccccccccchhhhhcCHHHHhhccccc--cCCCCCc
Confidence 4789999999999976554 3333332 1000 01112122222222221 1112222222111 1123456
Q ss_pred eEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHH
Q 042373 234 VTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 234 l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l 281 (494)
.+.+||||||.|... -+..+.+.++.......+++...-+..-+..+
T Consensus 130 fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 130 FKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred ceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 789999999999853 35667777777767777777766544333333
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.044 Score=53.65 Aligned_cols=80 Identities=26% Similarity=0.344 Sum_probs=59.4
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHc---CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCe
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIIS---GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPV 197 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~---grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~ 197 (494)
.+|+....+.+++=.+.. ++ -..+.|.+..-.+++ |+|.+...-.|.|||.+ ++|++..++.+. ...
T Consensus 3 ~~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg-------~~L 72 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG-------SRL 72 (229)
T ss_pred CCCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC-------CcE
Confidence 468777888888766643 34 578999999988885 58999999999999964 779998887653 345
Q ss_pred EEEEccchhHHHhh
Q 042373 198 GLVMAPTGELVRQQ 211 (494)
Q Consensus 198 aLIl~PTreLa~Qi 211 (494)
+.+++|. .|..|.
T Consensus 73 vrviVpk-~Ll~q~ 85 (229)
T PF12340_consen 73 VRVIVPK-ALLEQM 85 (229)
T ss_pred EEEEcCH-HHHHHH
Confidence 6666663 355554
|
There are two conserved sequence motifs: LLE and NMG. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.062 Score=56.84 Aligned_cols=109 Identities=9% Similarity=-0.008 Sum_probs=58.3
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc-hhHH-Hhhh--------------hhhHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT-GELV-RQQV--------------RRGRMIDLL 221 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT-reLa-~Qi~--------------TPgrl~dll 221 (494)
++.+++++|||+|||.+..--......... ..+...+||-+-| |.-+ .|.. ++..+...+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~----~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L 249 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSD----DKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEI 249 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhc----cCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHH
Confidence 457889999999999765432222111110 0113345555554 3333 2331 222232222
Q ss_pred HhcCcceecccceEEEEEcccchhcccC-ChhHHHHHHHhhcCC-CcEEEecCCCChH
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMFDMG-FEPQITRIVQNIRPD-RQAVLFSPTFPPR 277 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml~~g-f~~~i~~Il~~l~~~-~Q~ilfSAT~~~~ 277 (494)
. .+++.++|++|++.++.... ....+..++..+.+. .-++.+|||....
T Consensus 250 ~-------~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 250 T-------QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS 300 (388)
T ss_pred H-------HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH
Confidence 2 24678999999999876321 123444455544433 3457789987643
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.096 Score=53.15 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=54.6
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
|.++++.+|+|+|||...-.- ...+.... ....++ ++-+....|..+. .|..+...++.... =.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l-a~~~~~~g---~~~~~~--~~~v~~~~l~~~~~g~~~~~~~~~l~~a~--------gg 124 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM-ADILYKLG---YIKKGH--LLTVTRDDLVGQYIGHTAPKTKEVLKKAM--------GG 124 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH-HHHHHHcC---CCCCCc--eEEecHHHHHHHHhccchHHHHHHHHHcc--------CC
Confidence 567999999999999755432 22222111 001122 3334444555443 23334444444321 15
Q ss_pred EEEEcccchhccc----CChh-HHHHHHHhhcCC-CcEEEecCCCChHHHHH
Q 042373 236 YLVLDEADRMFDM----GFEP-QITRIVQNIRPD-RQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 236 ~lVlDEaD~ml~~----gf~~-~i~~Il~~l~~~-~Q~ilfSAT~~~~v~~l 281 (494)
+|++||+|.|... .+.. .+..++..+... ..++++-|+.+..+..+
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~ 176 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKF 176 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHH
Confidence 8999999998532 1333 344444444221 22334445555544433
|
|
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.1 Score=48.32 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=42.6
Q ss_pred ccceEEEEEcccchhcccCC--hhHHHHHHHhhcCCCcEEEecCCCChHHHHHHH
Q 042373 231 LTRVTYLVLDEADRMFDMGF--EPQITRIVQNIRPDRQAVLFSPTFPPRVEILAR 283 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf--~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~ 283 (494)
...+++|||||+=..+..|+ .+.+..+++..+...-+|+.+-..|+++..+|.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999998888886 457777788777777888888889988887764
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.043 Score=59.16 Aligned_cols=107 Identities=12% Similarity=0.139 Sum_probs=60.5
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCc--ceecccceEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGV--KITNLTRVTY 236 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~--~~~~l~~l~~ 236 (494)
+.++++|++|+|||.. +-.+...+... +..++++.. ..+..++ .+.+..+.. ....++++++
T Consensus 142 npl~L~G~~G~GKTHL-l~Ai~~~l~~~--------~~~v~yi~~-~~f~~~~------~~~l~~~~~~~f~~~~~~~dv 205 (445)
T PRK12422 142 NPIYLFGPEGSGKTHL-MQAAVHALRES--------GGKILYVRS-ELFTEHL------VSAIRSGEMQRFRQFYRNVDA 205 (445)
T ss_pred ceEEEEcCCCCCHHHH-HHHHHHHHHHc--------CCCEEEeeH-HHHHHHH------HHHHhcchHHHHHHHcccCCE
Confidence 4689999999999963 23444444332 455666653 4444432 111111100 0012467889
Q ss_pred EEEcccchhcccC-ChhHHHHHHHhh-cCCCcEEEecCCCChHHHHH
Q 042373 237 LVLDEADRMFDMG-FEPQITRIVQNI-RPDRQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 237 lVlDEaD~ml~~g-f~~~i~~Il~~l-~~~~Q~ilfSAT~~~~v~~l 281 (494)
|++||+|.+.... ....+..++..+ ....|+|+.|.+.|..+..+
T Consensus 206 LiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 206 LFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred EEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 9999999886532 234455555544 24567777766666665443
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.056 Score=55.70 Aligned_cols=67 Identities=24% Similarity=0.323 Sum_probs=44.3
Q ss_pred HHHHHhCCCCCCChhHHHHHHH-HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHH
Q 042373 133 LETFSKLNHENPVAIQAPASAL-IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELV 208 (494)
Q Consensus 133 l~~l~~~g~~~ptpiQ~~aip~-il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa 208 (494)
+..|.+.|+ +++.|...+.. +..+++++++++|||||| .++-.++..+...++ .-+.+++-.+.||.
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~~~~------~~rivtIEd~~El~ 191 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEMVIQDP------TERVFIIEDTGEIQ 191 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhhhhcCC------CceEEEEcCCCccc
Confidence 345555565 45677777765 456789999999999999 555666665532211 33567777777774
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.042 Score=57.78 Aligned_cols=109 Identities=18% Similarity=0.086 Sum_probs=56.3
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch-hH-HHhh--------------hhhhHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG-EL-VRQQ--------------VRRGRMIDL 220 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr-eL-a~Qi--------------~TPgrl~dl 220 (494)
.|+.+++++|||+|||....--....+.... . ...++|-+-+- .- ..|. .+++.+...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G-----~-~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~ 209 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFG-----A-SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLA 209 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----C-CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHH
Confidence 3678899999999999865543333332211 0 12344444332 11 1222 233333332
Q ss_pred HHhcCcceecccceEEEEEcccchhcccC-ChhHHHHHHHhhcCCCcEEEecCCCChHH
Q 042373 221 LCKNGVKITNLTRVTYLVLDEADRMFDMG-FEPQITRIVQNIRPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 221 l~~~~~~~~~l~~l~~lVlDEaD~ml~~g-f~~~i~~Il~~l~~~~Q~ilfSAT~~~~v 278 (494)
+. .+.+.++|+||.+-+..... ...++..+.....+...++++|||.....
T Consensus 210 l~-------~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 210 LA-------ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred HH-------HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 32 35677899999997543211 22233333222223345778899976544
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.053 Score=58.56 Aligned_cols=105 Identities=18% Similarity=0.127 Sum_probs=58.9
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhh-----hHHHHHHHhcCcceecccc
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRR-----GRMIDLLCKNGVKITNLTR 233 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TP-----grl~dll~~~~~~~~~l~~ 233 (494)
+.++++|++|+|||.. +-.+.+.+....+ +..++++. ..++...+..- +.+..+. ..+++
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~~~------~~~v~yv~-~~~f~~~~~~~l~~~~~~~~~~~-------~~~~~ 206 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESNFS------DLKVSYMS-GDEFARKAVDILQKTHKEIEQFK-------NEICQ 206 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHhCC------CCeEEEEE-HHHHHHHHHHHHHHhhhHHHHHH-------HHhcc
Confidence 4589999999999942 2334444433211 44555554 45666554221 1111111 12567
Q ss_pred eEEEEEcccchhccc-CChhHHHHHHHhhc-CCCcEEEecCCCChHH
Q 042373 234 VTYLVLDEADRMFDM-GFEPQITRIVQNIR-PDRQAVLFSPTFPPRV 278 (494)
Q Consensus 234 l~~lVlDEaD~ml~~-gf~~~i~~Il~~l~-~~~Q~ilfSAT~~~~v 278 (494)
+++||+||+|.+... .....+..++..+. .+.|+|+.|-..|..+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 889999999987532 22345555665553 4457777666555444
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.054 Score=60.25 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=59.6
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh---hhHHHHHHHhcCcceecccceEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR---RGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T---Pgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.+++++++|+|||.. +-.+.+.+.... .+..+++ +++.+++.+... -+.+.. +.. .+.++++
T Consensus 316 pL~LyG~sGsGKTHL-L~AIa~~a~~~~------~g~~V~Y-itaeef~~el~~al~~~~~~~-f~~------~y~~~DL 380 (617)
T PRK14086 316 PLFIYGESGLGKTHL-LHAIGHYARRLY------PGTRVRY-VSSEEFTNEFINSIRDGKGDS-FRR------RYREMDI 380 (617)
T ss_pred cEEEECCCCCCHHHH-HHHHHHHHHHhC------CCCeEEE-eeHHHHHHHHHHHHHhccHHH-HHH------HhhcCCE
Confidence 489999999999962 223344443211 0334544 455666655311 011111 111 2567899
Q ss_pred EEEcccchhcccC-ChhHHHHHHHhhcC-CCcEEEecCCCChHHH
Q 042373 237 LVLDEADRMFDMG-FEPQITRIVQNIRP-DRQAVLFSPTFPPRVE 279 (494)
Q Consensus 237 lVlDEaD~ml~~g-f~~~i~~Il~~l~~-~~Q~ilfSAT~~~~v~ 279 (494)
||||++|.+.... ....+..+++.+.. +.|+|+.|-..|..+.
T Consensus 381 LlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 381 LLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred EEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 9999999886433 23455566665543 5778776666555554
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.15 Score=59.53 Aligned_cols=141 Identities=20% Similarity=0.305 Sum_probs=96.4
Q ss_pred HHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCccee
Q 042373 150 PASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKIT 229 (494)
Q Consensus 150 ~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~ 229 (494)
-.++..++--|+=++ .--+||--+ |.-+|+.+... |-++||++ |+ | +++|+|.. ++
T Consensus 1241 ~~~~r~lqFPelrLi-qyDcGKLQt-LAiLLqQLk~e--------ghRvLIfT-------QM-t--kmLDVLeq----FL 1296 (1958)
T KOG0391|consen 1241 TTAPRLLQFPELRLI-QYDCGKLQT-LAILLQQLKSE--------GHRVLIFT-------QM-T--KMLDVLEQ----FL 1296 (1958)
T ss_pred ccchhhhcCcchhee-ecccchHHH-HHHHHHHHHhc--------CceEEehh-------HH-H--HHHHHHHH----HH
Confidence 344555544333221 234677432 22345555443 67899975 32 2 67788875 56
Q ss_pred cccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCccceeeccccccCCCCCCceEE
Q 042373 230 NLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSIANSVRARGLDEKELELV 309 (494)
Q Consensus 230 ~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILVaTdv~~rGlDi~~v~~V 309 (494)
++....|+=||+.-.+ ++-..++++++.++++.+| ++.|-.-..||++-+.+.|
T Consensus 1297 nyHgylY~RLDg~t~v------EqRQaLmerFNaD~RIfcf--------------------ILSTrSggvGiNLtgADTV 1350 (1958)
T KOG0391|consen 1297 NYHGYLYVRLDGNTSV------EQRQALMERFNADRRIFCF--------------------ILSTRSGGVGINLTGADTV 1350 (1958)
T ss_pred hhcceEEEEecCCccH------HHHHHHHHHhcCCCceEEE--------------------EEeccCCccccccccCceE
Confidence 7888899999997643 4556677888888888776 6678888889999999999
Q ss_pred EecCCCCC------HhHHHhhhccCCCcceEEEEeccc
Q 042373 310 INFDAPND------YEDYVHHCCQSWLKSCAFRFISEE 341 (494)
Q Consensus 310 Inyd~P~s------~~~yvhR~GRaGr~G~aitfv~~~ 341 (494)
|.||--.+ ..+..||||+.. .=..|.||+++
T Consensus 1351 vFYDsDwNPtMDaQAQDrChRIGqtR-DVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1351 VFYDSDWNPTMDAQAQDRCHRIGQTR-DVHIYRLISER 1387 (1958)
T ss_pred EEecCCCCchhhhHHHHHHHhhcCcc-ceEEEEeeccc
Confidence 99998765 457788998853 34578888876
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.057 Score=54.97 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=62.2
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCC--CEEE-EcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCe
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGL--DSVA-ITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPV 197 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~gr--dvi~-~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~ 197 (494)
.+|+++-.++.+.+.|... +-.|+ ++++ +||+|+|||.... .+.+.+ +..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~---------------~~~~~~~~~lll~G~~G~GKT~la~-~l~~~~-----------~~~ 70 (316)
T PHA02544 18 STIDECILPAADKETFKSI---------------VKKGRIPNMLLHSPSPGTGKTTVAK-ALCNEV-----------GAE 70 (316)
T ss_pred CcHHHhcCcHHHHHHHHHH---------------HhcCCCCeEEEeeCcCCCCHHHHHH-HHHHHh-----------Ccc
Confidence 5677777777776666532 12342 4555 8999999996422 222222 223
Q ss_pred EEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 198 GLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 198 aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
.+.+.+...-... ....+..+..... .....++|||||+|.+........+..+++..+...++|+.+
T Consensus 71 ~~~i~~~~~~~~~--i~~~l~~~~~~~~----~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 71 VLFVNGSDCRIDF--VRNRLTRFASTVS----LTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred ceEeccCcccHHH--HHHHHHHHHHhhc----ccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 4555554311111 0111222222211 123567999999998833323455666666666666666544
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.032 Score=62.74 Aligned_cols=61 Identities=23% Similarity=0.224 Sum_probs=47.5
Q ss_pred CCCChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 142 ENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..+++.|..|+..++.. ..++++||+|||||... .-++.++... +.++|+++||..-+.++
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~~--------g~~VLv~a~sn~Avd~l 217 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVKR--------GLRVLVTAPSNIAVDNL 217 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHHc--------CCCEEEEcCcHHHHHHH
Confidence 46799999999999977 56788999999999644 3444444432 56899999999887765
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.11 Score=64.27 Aligned_cols=121 Identities=20% Similarity=0.194 Sum_probs=73.8
Q ss_pred CCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh----hhhH
Q 042373 143 NPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV----RRGR 216 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~----TPgr 216 (494)
.+++.|..|+-.++.+ +-+++.+..|+|||... -.++..+.... ...+..++.++||---|..+. .-..
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~----~~~~~~V~glAPTgrAAk~L~e~Gi~A~T 1041 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLP----ESERPRVVGLGPTHRAVGEMRSAGVDAQT 1041 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhh----cccCceEEEECCcHHHHHHHHhcCcchhh
Confidence 6899999999999986 56788899999999643 23333332110 111567888999987666651 1112
Q ss_pred HHHHHHhcCc----ceecccceEEEEEcccchhcccCChhHHHHHHHhhcC-CCcEEEecC
Q 042373 217 MIDLLCKNGV----KITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP-DRQAVLFSP 272 (494)
Q Consensus 217 l~dll~~~~~----~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~-~~Q~ilfSA 272 (494)
+..+|..... .......-++|||||+-++- ..++..++..++. ..++||+.=
T Consensus 1042 I~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~----~~~m~~Ll~~~~~~garvVLVGD 1098 (1747)
T PRK13709 1042 LASFLHDTQLQQRSGETPDFSNTLFLLDESSMVG----NTDMARAYALIAAGGGRAVSSGD 1098 (1747)
T ss_pred HHHHhcccccccccccCCCCCCcEEEEEcccccc----HHHHHHHHHhhhcCCCEEEEecc
Confidence 3333432100 00112345899999998544 3456667776653 577777643
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.23 Score=53.20 Aligned_cols=113 Identities=18% Similarity=0.144 Sum_probs=59.8
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHH-HcCCCCCCCCCCCeEEEEccc-hh-HHHhh--------------hhhhHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHI-WEQPPVVPGDDSPVGLVMAPT-GE-LVRQQ--------------VRRGRMIDL 220 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l-~~~~~~~~~~~~p~aLIl~PT-re-La~Qi--------------~TPgrl~dl 220 (494)
|+.+++++|||+|||....--+.... .... ...++|-+-+ |. ...|. .++..+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g-------~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~ 293 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK-------KKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKA 293 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------CeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHH
Confidence 66789999999999965443222222 1110 2334444444 32 22332 233444444
Q ss_pred HHhcCcceecccceEEEEEcccchhcc-cCChhHHHHHHHhh-cCCCcEEEecCCCCh-HHHHHHHh
Q 042373 221 LCKNGVKITNLTRVTYLVLDEADRMFD-MGFEPQITRIVQNI-RPDRQAVLFSPTFPP-RVEILARK 284 (494)
Q Consensus 221 l~~~~~~~~~l~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l-~~~~Q~ilfSAT~~~-~v~~l~~~ 284 (494)
+. .+.+.++|++|-+-+... ......+..++... .+..-.+++|||... .+..+...
T Consensus 294 l~-------~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~ 353 (424)
T PRK05703 294 LE-------QLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKH 353 (424)
T ss_pred HH-------HhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHH
Confidence 43 245679999999876432 11223455555522 233457788998765 44444433
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.0088 Score=68.60 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=75.4
Q ss_pred CCCChhHHHHHHHHHc-CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---------
Q 042373 142 ENPVAIQAPASALIIS-GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--------- 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~-grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--------- 211 (494)
....|+|.+.+-.+.. ..++++.+|||+|||++|-+.++..+...+ +.++++++|-.+|+..-
T Consensus 926 ~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p-------~~kvvyIap~kalvker~~Dw~~r~~ 998 (1230)
T KOG0952|consen 926 KYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP-------GSKVVYIAPDKALVKERSDDWSKRDE 998 (1230)
T ss_pred cccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC-------CccEEEEcCCchhhcccccchhhhcc
Confidence 3456677666544442 357888999999999999999998876544 67899999999998764
Q ss_pred ---------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHH
Q 042373 212 ---------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRI 257 (494)
Q Consensus 212 ---------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~I 257 (494)
.||.+...+. +.+.+.-.+.++..+|+||.|++-+ +..+.++.|
T Consensus 999 ~~g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~-Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~i 1069 (1230)
T KOG0952|consen 999 LPGIKVIELTGDVTPDVKAVREADIVITTPEKWDGIS-RSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVI 1069 (1230)
T ss_pred cCCceeEeccCccCCChhheecCceEEcccccccCcc-ccccchhhhccccceeecccccccC-CCcceEEEE
Confidence 4555543333 3334445688999999999998764 444444433
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.086 Score=53.89 Aligned_cols=39 Identities=13% Similarity=0.258 Sum_probs=24.3
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
...++|||||+|.|... ....+..++...+....+|+.+
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 34578999999987542 2345556666555555555543
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.09 Score=56.59 Aligned_cols=109 Identities=14% Similarity=0.229 Sum_probs=58.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh---hhHHHHHHHhcCcceecccceE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR---RGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T---Pgrl~dll~~~~~~~~~l~~l~ 235 (494)
+.++++|++|+|||... -.+.+.+....+ +..++++.. .++..++.. .+.+..+... ...+++
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~~~------~~~v~yi~~-~~f~~~~~~~~~~~~~~~f~~~------~~~~~d 196 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNEP------DLRVMYITS-EKFLNDLVDSMKEGKLNEFREK------YRKKVD 196 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHhCC------CCeEEEEEH-HHHHHHHHHHHhcccHHHHHHH------HHhcCC
Confidence 46899999999999633 234444443211 345666653 444443311 1111111111 112578
Q ss_pred EEEEcccchhcccC-ChhHHHHHHHhhc-CCCcEEEecCCCChHHHHH
Q 042373 236 YLVLDEADRMFDMG-FEPQITRIVQNIR-PDRQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 236 ~lVlDEaD~ml~~g-f~~~i~~Il~~l~-~~~Q~ilfSAT~~~~v~~l 281 (494)
+|++||+|.+.+.. ....+..++..+. ...|+|+.|..-|..+..+
T Consensus 197 vLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 197 VLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred EEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 99999999886532 2234445554443 3456666655555555444
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.072 Score=61.56 Aligned_cols=46 Identities=24% Similarity=0.384 Sum_probs=28.0
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHH
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~ 279 (494)
.+.+++||||+|+|...++ ..+.++++..+....+||.+ |-+..+.
T Consensus 119 ~~~KV~IIDEad~lt~~a~-NaLLK~LEEpP~~~~fIl~t-t~~~kLl 164 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGF-NALLKIVEEPPEHLKFIFAT-TEPDKVI 164 (824)
T ss_pred CCceEEEEechhhcCHHHH-HHHHHHHhCCCCCeEEEEEe-CChhhhh
Confidence 5778999999999986442 34444555544444555443 5444443
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.12 Score=54.31 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=17.5
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l 183 (494)
.+++++|++|+|||... --++..+
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 67999999999999743 3344444
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.015 Score=56.96 Aligned_cols=106 Identities=19% Similarity=0.226 Sum_probs=52.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
-++|+.+|+|+|||.+.+. +.+.++-..- .--+|=|--+.+-...+ -..++. ++..... ...-.+-+.+|
T Consensus 49 P~liisGpPG~GKTTsi~~-LAr~LLG~~~------ke~vLELNASdeRGIDv-VRn~IK-~FAQ~kv-~lp~grhKIiI 118 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILC-LARELLGDSY------KEAVLELNASDERGIDV-VRNKIK-MFAQKKV-TLPPGRHKIII 118 (333)
T ss_pred CceEeeCCCCCchhhHHHH-HHHHHhChhh------hhHhhhccCccccccHH-HHHHHH-HHHHhhc-cCCCCceeEEE
Confidence 3899999999999987543 3333321100 00011111111111111 011222 2222111 12236788999
Q ss_pred EcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCC
Q 042373 239 LDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFP 275 (494)
Q Consensus 239 lDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~ 275 (494)
+||||.|.+ |-...+++.++-..+..++.+...+..
T Consensus 119 LDEADSMT~-gAQQAlRRtMEiyS~ttRFalaCN~s~ 154 (333)
T KOG0991|consen 119 LDEADSMTA-GAQQALRRTMEIYSNTTRFALACNQSE 154 (333)
T ss_pred eeccchhhh-HHHHHHHHHHHHHcccchhhhhhcchh
Confidence 999999984 444555555555555555555444433
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.13 Score=64.60 Aligned_cols=107 Identities=24% Similarity=0.162 Sum_probs=66.1
Q ss_pred CCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhH---HHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh----
Q 042373 142 ENPVAIQAPASALIISG--LDSVAITETGSGKTLAFL---LPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV---- 212 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafl---lpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~---- 212 (494)
..+++.|..|+-.++.+ +-+++.+..|+|||.... -++.+.+... +..++.++||..-+..+.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~--------g~~v~glApT~~Aa~~L~~~g~ 1089 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESE--------QLQVIGLAPTHEAVGELKSAGV 1089 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhc--------CCeEEEEeChHHHHHHHHhcCC
Confidence 36899999999999976 456777999999996541 2333333221 567888999988776651
Q ss_pred hhhHHHHHHHhcC--cceecccceEEEEEcccchhcccCChhHHHHHHHh
Q 042373 213 RRGRMIDLLCKNG--VKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQN 260 (494)
Q Consensus 213 TPgrl~dll~~~~--~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~ 260 (494)
.-..+..+|.... .....+...++||||||-++- ..++..++..
T Consensus 1090 ~a~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEasMv~----~~~~~~l~~~ 1135 (1960)
T TIGR02760 1090 QAQTLDSFLTDISLYRNSGGDFRNTLFILDESSMVS----NFQLTHATEL 1135 (1960)
T ss_pred chHhHHHHhcCcccccccCCCCcccEEEEEcccccc----HHHHHHHHHh
Confidence 1112333442110 011125567899999997544 2344444443
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.078 Score=56.73 Aligned_cols=57 Identities=28% Similarity=0.368 Sum_probs=36.5
Q ss_pred CCChhHHHHHHHHHcC-----CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHH
Q 042373 143 NPVAIQAPASALIISG-----LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVR 209 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g-----rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~ 209 (494)
.+-|+|.+.+--+... .--|+.-.-|.|||.-.+.-++..+ .+...||++|+.+|.+
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~----------~ra~tLVvaP~VAlmQ 245 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV----------DRAPTLVVAPTVALMQ 245 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc----------ccCCeeEEccHHHHHH
Confidence 3456676665444333 2346667899999986654444322 1445999999999964
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.14 Score=64.39 Aligned_cols=117 Identities=10% Similarity=0.120 Sum_probs=73.1
Q ss_pred CCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--------h
Q 042373 143 NPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--------V 212 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--------~ 212 (494)
.+++-|..++-.++.. +=+++.++.|+|||.. +-.++. +.... |..+++++||..-+..+ .
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~-~~~~~-------G~~V~~lAPTgrAA~~L~e~~g~~A~ 499 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLH-LASEQ-------GYEIQIITAGSLSAQELRQKIPRLAS 499 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHH-HHHhc-------CCeEEEEeCCHHHHHHHHHHhcchhh
Confidence 5899999999999876 5677889999999953 223333 33321 66899999998766655 1
Q ss_pred hhhHHHHHHHhcCc---------ceecccceEEEEEcccchhcccCChhHHHHHHHhh-cCCCcEEEecC
Q 042373 213 RRGRMIDLLCKNGV---------KITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI-RPDRQAVLFSP 272 (494)
Q Consensus 213 TPgrl~dll~~~~~---------~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l-~~~~Q~ilfSA 272 (494)
|--+++..+..... ....+..-++||||||-++- ..++..++... +.+.++||+.=
T Consensus 500 Ti~~~l~~l~~~~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~garvVlvGD 565 (1960)
T TIGR02760 500 TFITWVKNLFNDDQDHTVQGLLDKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHNSKLILLND 565 (1960)
T ss_pred hHHHHHHhhcccccchhHHHhhcccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcCCEEEEEcC
Confidence 22222221111100 01124567899999998554 34566666655 35667776643
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.098 Score=50.67 Aligned_cols=92 Identities=12% Similarity=0.115 Sum_probs=49.4
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEE
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.++.++++|++|+|||.... .+...+... +..++++.-. .+.. .+. .....++
T Consensus 41 ~~~~~~l~G~~G~GKT~La~-ai~~~~~~~--------~~~~~~i~~~-~~~~----------~~~-------~~~~~~~ 93 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQ-ALVADASYG--------GRNARYLDAA-SPLL----------AFD-------FDPEAEL 93 (227)
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHHhC--------CCcEEEEehH-HhHH----------HHh-------hcccCCE
Confidence 35679999999999995322 222222221 3345555432 2211 111 1234568
Q ss_pred EEEcccchhcccCChhHHHHHHHhhcCCC-cEEEecCCCCh
Q 042373 237 LVLDEADRMFDMGFEPQITRIVQNIRPDR-QAVLFSPTFPP 276 (494)
Q Consensus 237 lVlDEaD~ml~~gf~~~i~~Il~~l~~~~-Q~ilfSAT~~~ 276 (494)
||+||+|.+-.. -...+..++....... .+++++++.++
T Consensus 94 liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 94 YAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred EEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 999999987532 2334555555444333 34666666543
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.15 Score=44.98 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=51.7
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYL 237 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~l 237 (494)
++-+++.|+.|+|||... .-++..+.. ....+++.=......+...+. +.+.+... ....-.+|
T Consensus 2 ~~~~~l~G~R~vGKTtll-~~~~~~~~~---------~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~i 65 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLL-KQLAKDLLP---------PENILYINFDDPRDRRLADPD-LLEYFLEL-----IKPGKKYI 65 (128)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHhcc---------cccceeeccCCHHHHHHhhhh-hHHHHHHh-----hccCCcEE
Confidence 566889999999999632 223333320 223444432222222222221 33333321 01145789
Q ss_pred EEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 238 VLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 238 VlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
++||+|.+-+ +...+..+...- ++.++++.+.
T Consensus 66 ~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS 97 (128)
T PF13173_consen 66 FIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGS 97 (128)
T ss_pred EEehhhhhcc--HHHHHHHHHHhc-cCceEEEEcc
Confidence 9999999864 566777777644 4556666544
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.14 Score=55.81 Aligned_cols=42 Identities=19% Similarity=0.072 Sum_probs=26.6
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHc---CCCEEEEcCCCCCchhh
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIIS---GLDSVAITETGSGKTLA 174 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~---grdvi~~a~TGSGKTla 174 (494)
.+|+++-.++..+..|... + ..... .+.++++||+|+|||..
T Consensus 11 ~~l~dlvg~~~~~~~l~~~-l-----------~~~~~g~~~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREW-I-----------ESWLKGKPKKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCHHHhcCCHHHHHHHHHH-H-----------HHHhcCCCCCeEEEECCCCCCHHHH
Confidence 3466666666666665442 0 00112 46899999999999963
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.12 Score=55.02 Aligned_cols=109 Identities=15% Similarity=0.139 Sum_probs=55.2
Q ss_pred CCCCCcccCCCCHHHHHHHHhC---CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKL---NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~---g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
.|-.+|++++-.....+.|+.. -+..|.-.+..- +-.++.+++.+|+|+|||+.. ..+....
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LA-----kalA~~l------- 203 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLA-----KAVAHHT------- 203 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHH-----HHHHHhc-------
Confidence 3456788887666655555442 222222222111 123588999999999999743 2222111
Q ss_pred CCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 195 SPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+...+.+.. .++.... .++..+.+++... .-..-.+|++||+|.++.
T Consensus 204 ~~~fi~i~~-s~l~~k~~ge~~~~lr~lf~~A-----~~~~P~ILfIDEID~i~~ 252 (398)
T PTZ00454 204 TATFIRVVG-SEFVQKYLGEGPRMVRDVFRLA-----RENAPSIIFIDEVDSIAT 252 (398)
T ss_pred CCCEEEEeh-HHHHHHhcchhHHHHHHHHHHH-----HhcCCeEEEEECHhhhcc
Confidence 112222222 2333222 2233344444321 112346899999999874
|
|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.071 Score=60.49 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=33.3
Q ss_pred CCChhHHHHHHHHH----cCCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 143 NPVAIQAPASALII----SGLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 143 ~ptpiQ~~aip~il----~grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.|.|.|...+-.++ .+.+.++-+|||+|||++.+-..|....
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q 66 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQ 66 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHH
Confidence 68999988776665 4578999999999999988766665543
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.17 Score=51.91 Aligned_cols=106 Identities=12% Similarity=0.111 Sum_probs=56.4
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh---hhHHHHHHHhcCcceecccce
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR---RGRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T---Pgrl~dll~~~~~~~~~l~~l 234 (494)
++.+++.|++|+|||.... .+...+... |..++++ ..-+|+.++.. -+.+.+.+. .+.++
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~~~--------g~~v~~~-~~~~l~~~lk~~~~~~~~~~~l~-------~l~~~ 218 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELAKK--------GVSSTLL-HFPEFIRELKNSISDGSVKEKID-------AVKEA 218 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHc--------CCCEEEE-EHHHHHHHHHHHHhcCcHHHHHH-------HhcCC
Confidence 5689999999999996433 344444322 3344443 22244444311 111222222 36788
Q ss_pred EEEEEcccchhc--ccCChhHHHHHHHh-hcCCCcEEEecCCCChHHHH
Q 042373 235 TYLVLDEADRMF--DMGFEPQITRIVQN-IRPDRQAVLFSPTFPPRVEI 280 (494)
Q Consensus 235 ~~lVlDEaD~ml--~~gf~~~i~~Il~~-l~~~~Q~ilfSAT~~~~v~~ 280 (494)
++|||||...-. +|.....+..|+.. ......|++.|.--..+...
T Consensus 219 dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 219 PVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEH 267 (306)
T ss_pred CEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHH
Confidence 999999987532 22211233445543 24556676666654444444
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.24 Score=51.99 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=26.0
Q ss_pred CCCcceEEEEecccCHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 042373 328 SWLKSCAFRFISEENAIYATDLVKAFELSELVVRDDLKAVADSF 371 (494)
Q Consensus 328 aGr~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~~~~~~~ 371 (494)
.|..+.++.++..........+...+....+.-...+..+++.+
T Consensus 229 ~Gsp~~Al~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~ 272 (365)
T PRK07471 229 EGSVGRALRLAGGDGLALYRRLTALLDTLPRLDRRALHALADAA 272 (365)
T ss_pred CCCHHHHHHHhcccchHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 46677777777766666666666666643333333445555443
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.38 Score=49.64 Aligned_cols=123 Identities=16% Similarity=0.192 Sum_probs=71.2
Q ss_pred CCCCChhHHHHHHHHH----cCC---CEEEEcCCCCCchhhhHHHHHHHHHcCCCCC----------CCCCCCeEEEE--
Q 042373 141 HENPVAIQAPASALII----SGL---DSVAITETGSGKTLAFLLPMLRHIWEQPPVV----------PGDDSPVGLVM-- 201 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il----~gr---dvi~~a~TGSGKTlafllpil~~l~~~~~~~----------~~~~~p~aLIl-- 201 (494)
+..+.|+|..+|..+. +|| -+++++|.|+||+... .-+.+.++-..+.. ...+.|-..+|
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~ 80 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSF 80 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEec
Confidence 4578899999998876 444 5899999999998543 33555555432111 01235667777
Q ss_pred ccchh--------HHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 202 APTGE--------LVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 202 ~PTre--------La~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
.|..+ .+.|| ..+.+.+... -.....+++|||+||.|.... ...+-++++.-+.+..+|+.|.
T Consensus 81 ~p~~~~~k~~~~I~idqI---R~l~~~~~~~----p~~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~~~fiL~~~ 151 (319)
T PRK08769 81 IPNRTGDKLRTEIVIEQV---REISQKLALT----PQYGIAQVVIVDPADAINRAA-CNALLKTLEEPSPGRYLWLISA 151 (319)
T ss_pred CCCcccccccccccHHHH---HHHHHHHhhC----cccCCcEEEEeccHhhhCHHH-HHHHHHHhhCCCCCCeEEEEEC
Confidence 56432 12222 1233333322 123467899999999997432 3334445554445555666554
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.32 Score=51.66 Aligned_cols=113 Identities=18% Similarity=0.246 Sum_probs=62.7
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCC-eEEEEccc-h-hHHHhh--------------hhhhHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSP-VGLVMAPT-G-ELVRQQ--------------VRRGRMIDLL 221 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p-~aLIl~PT-r-eLa~Qi--------------~TPgrl~dll 221 (494)
+.+++++|||+|||.....-.. .+..+ +. .++|-+-| | ..+.|. .+|..+.+.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~~~--------GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL 312 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFHGK--------KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRAL 312 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHHHc--------CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHH
Confidence 5778999999999975544332 33221 33 34555533 3 233443 3455555555
Q ss_pred HhcCcceecccceEEEEEcccchhcccC-ChhHHHHHHHhhcCCCcEEEecCCCCh-HHHHHHHh
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMFDMG-FEPQITRIVQNIRPDRQAVLFSPTFPP-RVEILARK 284 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml~~g-f~~~i~~Il~~l~~~~Q~ilfSAT~~~-~v~~l~~~ 284 (494)
..- ..-.+.++|++|-+-+..... ....+..+++...+..-++.+|||... .+...++.
T Consensus 313 ~~l----k~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~ 373 (436)
T PRK11889 313 TYF----KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITN 373 (436)
T ss_pred HHH----HhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHH
Confidence 431 011257899999998865321 233344455544455556678987554 44555543
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.16 Score=52.07 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=22.7
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEE
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~il 269 (494)
.+.+++|+||+|.|.... ...+.++++..+....+++
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il 134 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFAL 134 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEE
Confidence 357899999999987533 3344555554444444443
|
|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.061 Score=54.53 Aligned_cols=54 Identities=26% Similarity=0.294 Sum_probs=41.5
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCC
Q 042373 114 KCAPKPIKTWRQTGLTTKILETFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQP 187 (494)
Q Consensus 114 ~~~P~pi~~f~~l~L~~~ll~~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~ 187 (494)
..+|..|.+|+++++++-+.+.+.. .| =+++.+|||||||.. +..|+.+++...
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~~~~G-------------------LILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAESPRG-------------------LILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHhCCCc-------------------eEEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 4578999999999999988874432 22 278889999999965 567888887653
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.088 Score=51.07 Aligned_cols=40 Identities=13% Similarity=0.275 Sum_probs=23.3
Q ss_pred ceEEEEEcccchhcccCChhHHHHHHHhhc-CCCcEEEecCCCCh
Q 042373 233 RVTYLVLDEADRMFDMGFEPQITRIVQNIR-PDRQAVLFSPTFPP 276 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~-~~~Q~ilfSAT~~~ 276 (494)
+.++|++||+|.+-+ ..+..+++.+. .+.|+++.|.|.|+
T Consensus 85 ~~d~lliDdi~~~~~----~~lf~l~N~~~e~g~~ilits~~~p~ 125 (214)
T PRK06620 85 KYNAFIIEDIENWQE----PALLHIFNIINEKQKYLLLTSSDKSR 125 (214)
T ss_pred cCCEEEEeccccchH----HHHHHHHHHHHhcCCEEEEEcCCCcc
Confidence 446899999995421 34555555554 34555555545444
|
|
| >TIGR00708 cobA cob(I)alamin adenosyltransferase | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.47 Score=44.63 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=43.0
Q ss_pred cceEEEEEcccchhcccCC--hhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 232 TRVTYLVLDEADRMFDMGF--EPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf--~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
..+++|||||+-..++.|+ .+.+..+++..|+..-+|+..-..|+++..+|..
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 5789999999999888886 4567778887777778888888889988887754
|
Alternate name: corrinoid adenosyltransferase. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.13 Score=47.82 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=21.6
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP 203 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P 203 (494)
+++.|++|+|||...+--+...+ .+ |..+++++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~~--------g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-AR--------GEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-HC--------CCcEEEEEC
Confidence 68899999999964433333333 21 556777753
|
A related protein is found in archaea. |
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.13 Score=53.12 Aligned_cols=65 Identities=25% Similarity=0.250 Sum_probs=41.2
Q ss_pred HHHhCCCCCCChhHHHHHHHHH-cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHH
Q 042373 135 TFSKLNHENPVAIQAPASALII-SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELV 208 (494)
Q Consensus 135 ~l~~~g~~~ptpiQ~~aip~il-~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa 208 (494)
.+.+.|. .++.|...+-.++ .+++++++++||||||. ++-.++..+...++ +-+.+++=.+.||.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i~~~~~------~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEIVASAP------EDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHHhcCCC------CceEEEecCCcccc
Confidence 3445554 5667776665554 56799999999999995 44556665543221 23556666666764
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.14 Score=55.99 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=29.3
Q ss_pred CCCcccCC-CCHHHHHHHHh--CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhh
Q 042373 120 IKTWRQTG-LTTKILETFSK--LNHENPVAIQAPASALIISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 120 i~~f~~l~-L~~~ll~~l~~--~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTla 174 (494)
-.+|++++ +.+.+...... +-+..|.-+....++ ..+.+++++|+|+|||+.
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~---~p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLK---PPKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC---CCcceEEECCCCCcHHHH
Confidence 36788887 55544332222 222332222222221 246899999999999973
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.13 Score=56.21 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=18.1
Q ss_pred cCCccceeeccccccCCCCCCc
Q 042373 285 TNVCNLSIANSVRARGLDEKEL 306 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v 306 (494)
...++++.+.|.+-.|.||=++
T Consensus 328 dnpir~if~vd~lnegwdvlnl 349 (812)
T COG3421 328 DNPIRVIFSVDKLNEGWDVLNL 349 (812)
T ss_pred CCCeEEEEEeecccccchhhhh
Confidence 5678889999999999997554
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.32 Score=50.40 Aligned_cols=119 Identities=13% Similarity=0.149 Sum_probs=66.6
Q ss_pred CCChhHHHHHHHHHcC----CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC-------------CCCCCeEEEEccch
Q 042373 143 NPVAIQAPASALIISG----LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVP-------------GDDSPVGLVMAPTG 205 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g----rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~-------------~~~~p~aLIl~PTr 205 (494)
...|+|...|..++.. +-+++++|.|+|||.... -+...++-..+... ....|-..++.|..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~-~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~ 81 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE-RLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE 81 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH-HHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC
Confidence 3579999999998855 257899999999995433 34444543221110 11357778887742
Q ss_pred h----HHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEe
Q 042373 206 E----LVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLF 270 (494)
Q Consensus 206 e----La~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilf 270 (494)
. -+.|+ ..+.+.+.... .....+++|+|+||+|.... ...+-++++.-+.+..+|+.
T Consensus 82 ~~~~i~id~i---R~l~~~~~~~~----~~~~~kv~iI~~a~~m~~~a-aNaLLK~LEEPp~~~~fiL~ 142 (328)
T PRK05707 82 ADKTIKVDQV---RELVSFVVQTA----QLGGRKVVLIEPAEAMNRNA-ANALLKSLEEPSGDTVLLLI 142 (328)
T ss_pred CCCCCCHHHH---HHHHHHHhhcc----ccCCCeEEEECChhhCCHHH-HHHHHHHHhCCCCCeEEEEE
Confidence 1 12222 12333333221 24567889999999998532 22333344443333344433
|
|
| >KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.13 Score=53.95 Aligned_cols=79 Identities=15% Similarity=0.253 Sum_probs=50.8
Q ss_pred HHHHHcC-----CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-hhhhHHHHHHHhcC
Q 042373 152 SALIISG-----LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-VRRGRMIDLLCKNG 225 (494)
Q Consensus 152 ip~il~g-----rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-~TPgrl~dll~~~~ 225 (494)
+|.++.| |-|+.++|+|+|||+.. ..+... ...+.+=+..-.|+... +.-++|+.+|-.-
T Consensus 234 mPe~F~GirrPWkgvLm~GPPGTGKTlLA-----KAvATE--------c~tTFFNVSsstltSKwRGeSEKlvRlLFem- 299 (491)
T KOG0738|consen 234 MPEFFKGIRRPWKGVLMVGPPGTGKTLLA-----KAVATE--------CGTTFFNVSSSTLTSKWRGESEKLVRLLFEM- 299 (491)
T ss_pred hHHHHhhcccccceeeeeCCCCCcHHHHH-----HHHHHh--------hcCeEEEechhhhhhhhccchHHHHHHHHHH-
Confidence 3556666 79999999999999732 222211 22455656666666555 5556777776531
Q ss_pred cceecccceEEEEEcccchhcc
Q 042373 226 VKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 226 ~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
..+.--+.+.+||+|.|..
T Consensus 300 ---ARfyAPStIFiDEIDslcs 318 (491)
T KOG0738|consen 300 ---ARFYAPSTIFIDEIDSLCS 318 (491)
T ss_pred ---HHHhCCceeehhhHHHHHh
Confidence 1233446789999999885
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.28 Score=56.36 Aligned_cols=115 Identities=14% Similarity=0.090 Sum_probs=55.4
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---hhhhHHHHHHHhcCcceecccce
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---VRRGRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---~TPgrl~dll~~~~~~~~~l~~l 234 (494)
..++|+++|+|+|||...-. +.+.+.... ......+...+.+.++.-++-.. ....++..++..- .-..-
T Consensus 207 ~~n~LLvGppGvGKT~lae~-la~~i~~~~-vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l-----~~~~~ 279 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG-LAWRIVQGD-VPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL-----EQDTN 279 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH-HHHHHHhcC-CCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHH-----HhcCC
Confidence 46999999999999975322 222222211 00000122223222322222111 1123344443310 00122
Q ss_pred EEEEEcccchhcccCC----hhHHHHHHHhhcCCCcEEEecCCCChHHH
Q 042373 235 TYLVLDEADRMFDMGF----EPQITRIVQNIRPDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 235 ~~lVlDEaD~ml~~gf----~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~ 279 (494)
.+|++||+|.|+..|- ...+..++..+-....+.++.||-+++..
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFS 328 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHH
Confidence 4899999999986542 22344455544344456666677666543
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=1.2 Score=49.00 Aligned_cols=112 Identities=18% Similarity=0.142 Sum_probs=55.5
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc-hhHH-Hhh--------------hhhhHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT-GELV-RQQ--------------VRRGRMIDL 220 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT-reLa-~Qi--------------~TPgrl~dl 220 (494)
.|+-++++++||+|||.....-+........ ....+||-+.+ |..+ .|. .++..+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~------gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~a 422 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHA------PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDL 422 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcC------CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHH
Confidence 4678889999999999755332222221110 01233333333 3222 222 123344444
Q ss_pred HHhcCcceecccceEEEEEcccchhccc-CChhHHHHHHHhhcCCCcEEEecCCCCh-HHHHHH
Q 042373 221 LCKNGVKITNLTRVTYLVLDEADRMFDM-GFEPQITRIVQNIRPDRQAVLFSPTFPP-RVEILA 282 (494)
Q Consensus 221 l~~~~~~~~~l~~l~~lVlDEaD~ml~~-gf~~~i~~Il~~l~~~~Q~ilfSAT~~~-~v~~l~ 282 (494)
+.. +.+.++|+||.+-++-.. ....++..+. ......-+++++++... .+..++
T Consensus 423 L~~-------l~~~DLVLIDTaG~s~~D~~l~eeL~~L~-aa~~~a~lLVLpAtss~~Dl~eii 478 (559)
T PRK12727 423 LER-------LRDYKLVLIDTAGMGQRDRALAAQLNWLR-AARQVTSLLVLPANAHFSDLDEVV 478 (559)
T ss_pred HHH-------hccCCEEEecCCCcchhhHHHHHHHHHHH-HhhcCCcEEEEECCCChhHHHHHH
Confidence 432 456789999999764321 1112233222 22344557777887653 333333
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.18 Score=57.78 Aligned_cols=109 Identities=14% Similarity=0.189 Sum_probs=55.8
Q ss_pred CCCCCcccCCCCHHHHHHHHhC---CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKL---NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~---g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
.|..+|.+++-...+.+.|.+. .+..|.-++..- +...+.+++++|+|||||+.. -.+..-.
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~la--kalA~e~---------- 511 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLA--KAVATES---------- 511 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHH--HHHHHhc----------
Confidence 3456788888777777776552 111111111110 112357999999999999632 2222211
Q ss_pred CCeEEEEccchhHHHhh-h-hhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 195 SPVGLVMAPTGELVRQQ-V-RRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi-~-TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+.. +|.+..-+|.... + +...+..++... .-..-++|++||+|.|+.
T Consensus 512 ~~~-fi~v~~~~l~~~~vGese~~i~~~f~~A-----~~~~p~iifiDEid~l~~ 560 (733)
T TIGR01243 512 GAN-FIAVRGPEILSKWVGESEKAIREIFRKA-----RQAAPAIIFFDEIDAIAP 560 (733)
T ss_pred CCC-EEEEehHHHhhcccCcHHHHHHHHHHHH-----HhcCCEEEEEEChhhhhc
Confidence 112 2222223443332 1 233344444321 122347899999999874
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.5 Score=47.62 Aligned_cols=116 Identities=17% Similarity=0.242 Sum_probs=65.2
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch--hHHHhh--------------hhhhHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG--ELVRQQ--------------VRRGRMIDL 220 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr--eLa~Qi--------------~TPgrl~dl 220 (494)
.+..+.+++++|+|||..+..-+.. +..+. ...++|-+.+. ....|. .+|..+.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~~~~-------~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~ 145 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FHGKK-------KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRA 145 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HHHcC-------CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHH
Confidence 4578889999999999866543332 22110 23444544333 344444 234444444
Q ss_pred HHhcCcceecccceEEEEEcccchhccc-CChhHHHHHHHhhcCCCcEEEecCCCC-hHHHHHHHh
Q 042373 221 LCKNGVKITNLTRVTYLVLDEADRMFDM-GFEPQITRIVQNIRPDRQAVLFSPTFP-PRVEILARK 284 (494)
Q Consensus 221 l~~~~~~~~~l~~l~~lVlDEaD~ml~~-gf~~~i~~Il~~l~~~~Q~ilfSAT~~-~~v~~l~~~ 284 (494)
+.. .....+.+++++|-+-++... .....+..++....+..-++.+|||.. ..+...++.
T Consensus 146 l~~----l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~ 207 (270)
T PRK06731 146 LTY----FKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITN 207 (270)
T ss_pred HHH----HHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHH
Confidence 432 112246799999999886522 223344455555555545667999865 466566554
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.32 Score=46.58 Aligned_cols=107 Identities=18% Similarity=0.183 Sum_probs=60.6
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc-hhHH-Hhhhh-----------------hhHHH-HH
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT-GELV-RQQVR-----------------RGRMI-DL 220 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT-reLa-~Qi~T-----------------Pgrl~-dl 220 (494)
+++++|||+|||....= +-.++..+. ...+||-+-| |.=| .|..+ |..+. +.
T Consensus 4 i~lvGptGvGKTTt~aK-LAa~~~~~~-------~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~ 75 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAK-LAARLKLKG-------KKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREA 75 (196)
T ss_dssp EEEEESTTSSHHHHHHH-HHHHHHHTT---------EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHH
T ss_pred EEEECCCCCchHhHHHH-HHHHHhhcc-------ccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHH
Confidence 67889999999975432 222222211 3456666554 3222 33311 22222 22
Q ss_pred HHhcCcceecccceEEEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHH
Q 042373 221 LCKNGVKITNLTRVTYLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEI 280 (494)
Q Consensus 221 l~~~~~~~~~l~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~ 280 (494)
+.. ...++.++|++|-+-+... ......+..++..+.+..-.+.+|||.......
T Consensus 76 l~~-----~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 76 LEK-----FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HHH-----HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred HHH-----HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 221 1234588999999976542 223456777777887777788899998776543
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.29 Score=47.92 Aligned_cols=63 Identities=21% Similarity=0.271 Sum_probs=32.4
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
++|+++|+|+|||...- ++.+-+. .....+-.|..+ .++.+..++.. +..=++|.+
T Consensus 52 h~lf~GPPG~GKTTLA~--IIA~e~~---------~~~~~~sg~~i~------k~~dl~~il~~-------l~~~~ILFI 107 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR--IIANELG---------VNFKITSGPAIE------KAGDLAAILTN-------LKEGDILFI 107 (233)
T ss_dssp EEEEESSTTSSHHHHHH--HHHHHCT-----------EEEEECCC--------SCHHHHHHHHT---------TT-EEEE
T ss_pred eEEEECCCccchhHHHH--HHHhccC---------CCeEeccchhhh------hHHHHHHHHHh-------cCCCcEEEE
Confidence 68999999999996332 2222211 222333334322 23334444542 344468999
Q ss_pred cccchhc
Q 042373 240 DEADRMF 246 (494)
Q Consensus 240 DEaD~ml 246 (494)
||.|+|-
T Consensus 108 DEIHRln 114 (233)
T PF05496_consen 108 DEIHRLN 114 (233)
T ss_dssp CTCCC--
T ss_pred echhhcc
Confidence 9999976
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.54 Score=45.73 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=28.5
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc---cchhHHHh
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA---PTGELVRQ 210 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~---PTreLa~Q 210 (494)
.|.=+++.|++|+|||. |++-++.++..+. +..+++++ |..+++..
T Consensus 12 ~G~l~lI~G~~G~GKT~-~~~~~~~~~~~~~-------g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 12 PGDLIIIAARPSMGKTA-FALNIAENIAKKQ-------GKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred CCeEEEEEeCCCCCHHH-HHHHHHHHHHHhC-------CCceEEEeCCCCHHHHHHH
Confidence 35678889999999995 4554554444321 44677776 34444443
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.15 Score=55.56 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=54.7
Q ss_pred CCCCCcccCCCCHHHHHHHHhCC--CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKLN--HENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDS 195 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~g--~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~ 195 (494)
.|-.+|+++.-.+.+...+...- +..|...+... .-..+.+++++|+|||||+.. -.+..-. +
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la--~alA~~~----------~ 113 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA--KAVAGEA----------G 113 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH--HHHHHHc----------C
Confidence 45677888876666655554310 22222222111 112367999999999999732 2222111 1
Q ss_pred CeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 196 PVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
.. ++-+..-++.... .+..++.+++..- .-..-.+|+|||+|.+..
T Consensus 114 ~~-~~~i~~~~~~~~~~g~~~~~l~~~f~~a-----~~~~p~Il~iDEid~l~~ 161 (495)
T TIGR01241 114 VP-FFSISGSDFVEMFVGVGASRVRDLFEQA-----KKNAPCIIFIDEIDAVGR 161 (495)
T ss_pred CC-eeeccHHHHHHHHhcccHHHHHHHHHHH-----HhcCCCEEEEechhhhhh
Confidence 11 3333333333221 1233444554431 112235899999999874
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.35 Score=48.26 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=20.9
Q ss_pred HHHHHHHcCCCEEEEcCCCCCchhhh
Q 042373 150 PASALIISGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 150 ~aip~il~grdvi~~a~TGSGKTlaf 175 (494)
+++-.+..|+++++.+++|+|||...
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 34455668899999999999999744
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.23 Score=51.64 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=19.0
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l 183 (494)
.+..+++++|||||||... -.++..+
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i 146 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYI 146 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhh
Confidence 3567899999999999643 3455554
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.36 Score=50.02 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=17.8
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l 183 (494)
.+++++||+|+|||.. +--++..+
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 6899999999999964 33344444
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.94 Score=52.34 Aligned_cols=74 Identities=20% Similarity=0.196 Sum_probs=39.5
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc-h---hHHHhh-----hhhhHHHHHHHhcCcc
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT-G---ELVRQQ-----VRRGRMIDLLCKNGVK 227 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT-r---eLa~Qi-----~TPgrl~dll~~~~~~ 227 (494)
.|..+++++|+|+|||...- .+...+ . .+..-+-+.. + ++.... ..|+++...+.....
T Consensus 346 ~~~~lll~GppG~GKT~lAk-~iA~~l-~---------~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~- 413 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGK-SIAKAL-N---------RKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKT- 413 (775)
T ss_pred CCceEEEECCCCCCHHHHHH-HHHHHh-c---------CCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCc-
Confidence 34579999999999996332 222222 1 1111111111 1 111000 357777776654211
Q ss_pred eecccceEEEEEcccchhcc
Q 042373 228 ITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 228 ~~~l~~l~~lVlDEaD~ml~ 247 (494)
.-.+|+|||+|.+..
T Consensus 414 -----~~~villDEidk~~~ 428 (775)
T TIGR00763 414 -----KNPLFLLDEIDKIGS 428 (775)
T ss_pred -----CCCEEEEechhhcCC
Confidence 113799999999984
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.51 Score=43.63 Aligned_cols=105 Identities=16% Similarity=0.283 Sum_probs=57.6
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC------------CCCCCeEEEEccchh----HHHhhhhhhHHHHHHHh
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVP------------GDDSPVGLVMAPTGE----LVRQQVRRGRMIDLLCK 223 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~------------~~~~p~aLIl~PTre----La~Qi~TPgrl~dll~~ 223 (494)
-+|++++.|+||+. +..-+...++....... ....|-.+++.|... ...|+- .+.+.+..
T Consensus 21 a~L~~G~~g~gk~~-~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir---~i~~~~~~ 96 (162)
T PF13177_consen 21 ALLFHGPSGSGKKT-LALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIR---EIIEFLSL 96 (162)
T ss_dssp EEEEECSTTSSHHH-HHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHH---HHHHHCTS
T ss_pred eEEEECCCCCCHHH-HHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHH---HHHHHHHH
Confidence 57999999999985 34445566654432211 023567777776644 233321 23333322
Q ss_pred cCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCC
Q 042373 224 NGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 224 ~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
. ..-...+++|+|+||.|... -...+.++++.-+....++|.+..
T Consensus 97 ~----~~~~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 97 S----PSEGKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp S-----TTSSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-
T ss_pred H----HhcCCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECC
Confidence 1 12357899999999998743 234455555555555555555443
|
... |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.69 Score=48.92 Aligned_cols=108 Identities=16% Similarity=0.132 Sum_probs=65.3
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH--HHhhh--------------hhhHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL--VRQQV--------------RRGRMIDLL 221 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL--a~Qi~--------------TPgrl~dll 221 (494)
++-+.++||||.|||..-.=-..+..+.. .....+||-+-|.-. +.|+- +|..|.+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~------~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai 276 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK------KKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAI 276 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc------cCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHH
Confidence 88999999999999975432222222111 114568888877443 45653 444444444
Q ss_pred HhcCcceecccceEEEEEcccchhc-ccCChhHHHHHHHhhcCCCcEEEecCCCChHH
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMF-DMGFEPQITRIVQNIRPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml-~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v 278 (494)
. .|+++++|.||=+-+=. |.....++..++....+.--.+.+|||.....
T Consensus 277 ~-------~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~d 327 (407)
T COG1419 277 E-------ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYED 327 (407)
T ss_pred H-------HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHH
Confidence 3 47888999999887522 11233455555555545556777899875543
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.27 Score=50.18 Aligned_cols=68 Identities=22% Similarity=0.254 Sum_probs=41.2
Q ss_pred HHHHHhCCCCCCChhHHHHHHHH-HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHH
Q 042373 133 LETFSKLNHENPVAIQAPASALI-ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVR 209 (494)
Q Consensus 133 l~~l~~~g~~~ptpiQ~~aip~i-l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~ 209 (494)
+..|.+.|. .++-|...+-.+ ..+++++++++||||||. ++-.++..+....+ .-+.+++=.+.||..
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~al~~~i~~~~~------~~ri~tiEd~~El~~ 176 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTT-LANALLAEIAKNDP------TDRVVIIEDTRELQC 176 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHhhccCC------CceEEEECCchhhcC
Confidence 444555554 445555555544 456799999999999995 34445555533211 235666667777653
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.21 Score=52.21 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
.+.++++||+|+|||+.
T Consensus 156 p~gvLL~GppGtGKT~l 172 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLL 172 (364)
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999963
|
Many proteins may score above the trusted cutoff because an internal |
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.19 Score=57.51 Aligned_cols=108 Identities=15% Similarity=0.186 Sum_probs=53.9
Q ss_pred CCCCcccCCCCHHHHHHHHhC---CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCC
Q 042373 119 PIKTWRQTGLTTKILETFSKL---NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDS 195 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~---g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~ 195 (494)
+-.+|++++-....++.++++ -+..|.-.+... +-.++.+++++|+|+|||... -.+.... +
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~la--raia~~~----------~ 237 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLLA--KAVANEA----------G 237 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHHH--HHHHHHh----------C
Confidence 346788887666666555442 111111111111 123578999999999999632 2222221 1
Q ss_pred CeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 196 PVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
...+.+ ..-++.... .+..++..++... .-..-.+|++||+|.+..
T Consensus 238 ~~~i~i-~~~~i~~~~~g~~~~~l~~lf~~a-----~~~~p~il~iDEid~l~~ 285 (733)
T TIGR01243 238 AYFISI-NGPEIMSKYYGESEERLREIFKEA-----EENAPSIIFIDEIDAIAP 285 (733)
T ss_pred CeEEEE-ecHHHhcccccHHHHHHHHHHHHH-----HhcCCcEEEeehhhhhcc
Confidence 122333 222333222 2233444444321 112336899999999874
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.67 Score=45.74 Aligned_cols=32 Identities=25% Similarity=0.150 Sum_probs=23.1
Q ss_pred CCChhHHHHHHHHH----cCC-CEEEEcCCCCCchhh
Q 042373 143 NPVAIQAPASALII----SGL-DSVAITETGSGKTLA 174 (494)
Q Consensus 143 ~ptpiQ~~aip~il----~gr-dvi~~a~TGSGKTla 174 (494)
.+++.+.+++-.+. .+. .++++|++|+|||..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 56777777766553 223 588999999999964
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.57 Score=53.43 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=27.0
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCC---CEEEEcCCCCCchhhhH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGL---DSVAITETGSGKTLAFL 176 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~gr---dvi~~a~TGSGKTlafl 176 (494)
.+|+++=-.+.+++.|++. +-.|+ -+|++++.|+|||....
T Consensus 13 qtFdEVIGQe~Vv~~L~~a---------------L~~gRL~HAyLFtGPpGvGKTTlAr 56 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHA---------------LDGGRLHHAYLFTGTRGVGKTTLSR 56 (830)
T ss_pred CcHHHHcCcHHHHHHHHHH---------------HhcCCCCeEEEEECCCCCCHHHHHH
Confidence 4566665567777666542 22332 35899999999997544
|
|
| >PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.67 Score=44.27 Aligned_cols=116 Identities=17% Similarity=0.087 Sum_probs=71.9
Q ss_pred HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc------cchh-----------------------
Q 042373 156 ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA------PTGE----------------------- 206 (494)
Q Consensus 156 l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~------PTre----------------------- 206 (494)
+....+++..++|.|||.+.+--.++.+-.. -+++|+- .+-|
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G---------~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~ 90 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHG---------KKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWET 90 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCC---------CeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccC
Confidence 4567899999999999998877777766442 2222220 0000
Q ss_pred --HHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCC--hhHHHHHHHhhcCCCcEEEecCCCChHHHHHH
Q 042373 207 --LVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGF--EPQITRIVQNIRPDRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 207 --La~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf--~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~ 282 (494)
...........+..... .+.-..+++|||||+=..++.|+ .+.|..+++.-|...-+|+..-..|+++..+|
T Consensus 91 ~~~~e~~~~~~~~~~~a~~----~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~A 166 (191)
T PRK05986 91 QDRERDIAAAREGWEEAKR----MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAA 166 (191)
T ss_pred CCcHHHHHHHHHHHHHHHH----HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 00000111111111111 12235689999999999999886 45677777776667777777778888888777
Q ss_pred Hh
Q 042373 283 RK 284 (494)
Q Consensus 283 ~~ 284 (494)
..
T Consensus 167 Dl 168 (191)
T PRK05986 167 DL 168 (191)
T ss_pred ch
Confidence 54
|
|
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.15 Score=55.45 Aligned_cols=61 Identities=15% Similarity=0.051 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHc-----C----CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 146 AIQAPASALIIS-----G----LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 146 piQ~~aip~il~-----g----rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
|+|.-.+-.++. | +.+++.-+-|.|||.....-++..++-. +..++.+++.+++++-|..+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-----g~~~~~i~~~A~~~~QA~~~ 70 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-----GEPGAEIYCAANTRDQAKIV 70 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-----CccCceEEEEeCCHHHHHHH
Confidence 678877777772 2 4678888999999976655555555432 22378899999999999887
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.38 Score=55.50 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=34.9
Q ss_pred CCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhcc
Q 042373 286 NVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ 327 (494)
Q Consensus 286 g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR 327 (494)
.-+..|..|-....|++..-.+.||.||--.++..+.|+--|
T Consensus 778 ~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdr 819 (1157)
T KOG0386|consen 778 PYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDR 819 (1157)
T ss_pred ceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHH
Confidence 344567889999999999999999999999888888775555
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.75 Score=50.81 Aligned_cols=62 Identities=10% Similarity=-0.009 Sum_probs=46.8
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.|.|.|...+-.+..+|-.++..+-..|||.+...-++......+ +..+++++|++.-|..+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~-------~~~v~i~A~~~~QA~~v 120 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK-------DKNVGILAHKASMAAEV 120 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC-------CCEEEEEeCCHHHHHHH
Confidence 578899998887766676677788888999887755554444322 56899999999888776
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.26 Score=51.86 Aligned_cols=91 Identities=20% Similarity=0.216 Sum_probs=48.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
.++|+.+|+|+|||...-+ |..-. +....-+..+..=..+ +..++.+.. +.....+=.+|.
T Consensus 49 ~SmIl~GPPG~GKTTlA~l--iA~~~----------~~~f~~~sAv~~gvkd------lr~i~e~a~-~~~~~gr~tiLf 109 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL--IAGTT----------NAAFEALSAVTSGVKD------LREIIEEAR-KNRLLGRRTILF 109 (436)
T ss_pred ceeEEECCCCCCHHHHHHH--HHHhh----------CCceEEeccccccHHH------HHHHHHHHH-HHHhcCCceEEE
Confidence 4899999999999974432 22211 2223333433333322 233333211 111223446899
Q ss_pred EcccchhcccCChhHHHHHHHhhcCCCcEEEecCC
Q 042373 239 LDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 239 lDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
|||+||+-.. |-..++-++ .+..++++.||
T Consensus 110 lDEIHRfnK~----QQD~lLp~v-E~G~iilIGAT 139 (436)
T COG2256 110 LDEIHRFNKA----QQDALLPHV-ENGTIILIGAT 139 (436)
T ss_pred EehhhhcChh----hhhhhhhhh-cCCeEEEEecc
Confidence 9999998743 233333444 34566777776
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.48 Score=53.21 Aligned_cols=40 Identities=13% Similarity=0.254 Sum_probs=23.6
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
..+.+++||||+|+|....|. .+.++++.-+....+|+.|
T Consensus 122 ~gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEe
Confidence 346789999999998754432 2333344333445555544
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.3 Score=55.17 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=27.3
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC---CCEEEEcCCCCCchhhhHH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG---LDSVAITETGSGKTLAFLL 177 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g---rdvi~~a~TGSGKTlafll 177 (494)
.+|+++--.+.+++.|+.. +..+ +.+|++|+.|+|||....+
T Consensus 13 ~tFddIIGQe~vv~~L~~a---------------i~~~rl~Ha~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNA---------------LDEGRLHHAYLLTGTRGVGKTTIARI 57 (709)
T ss_pred CCHHHHcCcHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCcHHHHHHH
Confidence 4566665566666655442 2223 4689999999999975543
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.95 Score=40.52 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=50.7
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcc-----------ee
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVK-----------IT 229 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~-----------~~ 229 (494)
++++|+.|+|||.. +--++..+........ .-..++....+....+... ..+.+++...... ..
T Consensus 3 l~I~G~~G~GKStl-l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (166)
T PF05729_consen 3 LWISGEPGSGKSTL-LRKLAQQLAEEEPPPS---KFPYPFFFSLRDISDSNNS-RSLADLLFDQLPESIAPIEELLQELL 77 (166)
T ss_pred EEEECCCCCChHHH-HHHHHHHHHhcCcccc---cceEEEEEeehhhhhcccc-chHHHHHHHhhccchhhhHHHHHHHH
Confidence 68899999999963 3445555544321100 0123444444444333210 1122221110000 00
Q ss_pred cccceEEEEEcccchhcccC-------ChhHHHHHHHh-hcCCCcEEEecCC
Q 042373 230 NLTRVTYLVLDEADRMFDMG-------FEPQITRIVQN-IRPDRQAVLFSPT 273 (494)
Q Consensus 230 ~l~~l~~lVlDEaD~ml~~g-------f~~~i~~Il~~-l~~~~Q~ilfSAT 273 (494)
....=-++|+|-+|.+.... +...+..++.. ++++..+++.|.+
T Consensus 78 ~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 78 EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 01111259999999988632 22344445544 4456666666553
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.64 Score=49.11 Aligned_cols=114 Identities=19% Similarity=0.206 Sum_probs=60.8
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc-hhH-HHhh--------------hhhhHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT-GEL-VRQQ--------------VRRGRMIDL 220 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT-reL-a~Qi--------------~TPgrl~dl 220 (494)
.++-+++++|||+|||....--... +..+. ...++|-+-| |.= +.|. .+|..+.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~-l~~~g-------~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~a 276 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ-LLKQN-------RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEA 276 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHHcC-------CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHH
Confidence 3567889999999999755433322 22221 2344555544 321 2333 345555554
Q ss_pred HHhcCcceecccceEEEEEcccchhccc-CChhHHHHHHHhhcCCCcEEEecCCCCh-HHHHHH
Q 042373 221 LCKNGVKITNLTRVTYLVLDEADRMFDM-GFEPQITRIVQNIRPDRQAVLFSPTFPP-RVEILA 282 (494)
Q Consensus 221 l~~~~~~~~~l~~l~~lVlDEaD~ml~~-gf~~~i~~Il~~l~~~~Q~ilfSAT~~~-~v~~l~ 282 (494)
+..- ...+..++|++|=+-+.... .....+..+...+.+.--++.+|||... .+..++
T Consensus 277 l~~l----~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 277 VQYM----TYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred HHHH----HhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 4421 12346789999998875422 1233444455555444445667776554 343433
|
|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.27 Score=52.91 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
.++.+++++|+|+|||+..
T Consensus 216 ~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3478999999999999743
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.32 Score=51.48 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=14.3
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
+.++++||+|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 6799999999999963
|
|
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.35 Score=51.63 Aligned_cols=69 Identities=12% Similarity=0.174 Sum_probs=44.1
Q ss_pred HHHHcCCCEEEEcCCCCCchhhhHHHHHH-HHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecc
Q 042373 153 ALIISGLDSVAITETGSGKTLAFLLPMLR-HIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNL 231 (494)
Q Consensus 153 p~il~grdvi~~a~TGSGKTlafllpil~-~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l 231 (494)
|.+-.+.|++..+|+|+|||-.|.--... .+.. | ...|+..|..-+..+. .-.+
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~s---------G--------------~f~T~a~Lf~~L~~~~--lg~v 258 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNNLSPYVILIS---------G--------------GTITVAKLFYNISTRQ--IGLV 258 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHc---------C--------------CcCcHHHHHHHHHHHH--Hhhh
Confidence 66667899999999999999665532222 2322 2 1134445555454432 2246
Q ss_pred cceEEEEEcccchhc
Q 042373 232 TRVTYLVLDEADRMF 246 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml 246 (494)
.+.++||+||.-.+.
T Consensus 259 ~~~DlLI~DEvgylp 273 (449)
T TIGR02688 259 GRWDVVAFDEVATLK 273 (449)
T ss_pred ccCCEEEEEcCCCCc
Confidence 788999999988754
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.19 Score=51.88 Aligned_cols=63 Identities=17% Similarity=0.078 Sum_probs=48.2
Q ss_pred CCCCCCChhHHHHHHHHHcCC-CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASALIISGL-DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~gr-dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..|...++-|...+-.+..++ |+++++.||||||. ++..+..--+ . .-+++.+=-|.||-.++
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT-----lLNal~~~i~---~--~eRvItiEDtaELql~~ 216 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT-----LLNALSGFID---S--DERVITIEDTAELQLAH 216 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH-----HHHHHHhcCC---C--cccEEEEeehhhhccCC
Confidence 457889999999999988887 99999999999996 2333322111 1 23789999999998876
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=92.95 E-value=1 Score=50.78 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=26.1
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCC---CEEEEcCCCCCchhhhHH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGL---DSVAITETGSGKTLAFLL 177 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~gr---dvi~~a~TGSGKTlafll 177 (494)
.+|+++=-.+.+++.|.+ .+..|+ -+|++|+.|+|||.+..+
T Consensus 13 ~~f~divGQe~vv~~L~~---------------~l~~~rl~hAyLf~Gp~GvGKTTlAr~ 57 (647)
T PRK07994 13 QTFAEVVGQEHVLTALAN---------------ALDLGRLHHAYLFSGTRGVGKTTIARL 57 (647)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 456665445666655542 233443 268999999999975543
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.62 Score=51.07 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=27.2
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC---CCEEEEcCCCCCchhhhHH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG---LDSVAITETGSGKTLAFLL 177 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g---rdvi~~a~TGSGKTlafll 177 (494)
.+|.++--.+.++..|+. .+.+| +.+|++||.|+|||.+..+
T Consensus 18 ~~f~dliGq~~vv~~L~~---------------ai~~~ri~~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSY---------------TILNDRLAGGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCceEEEECCCCCCHHHHHHH
Confidence 456665555566655543 23344 3689999999999975543
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.33 Score=49.10 Aligned_cols=16 Identities=25% Similarity=0.148 Sum_probs=14.0
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
..+++++|+|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999963
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.34 Score=51.46 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=62.1
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHH-HHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcC---cceecccc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRH-IWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNG---VKITNLTR 233 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~-l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~---~~~~~l~~ 233 (494)
..-++++|++|+|||- |+-++.+ +....+ .++++++..-.- ... ++..+..+. .+. .. +
T Consensus 113 ~nplfi~G~~GlGKTH--Ll~Aign~~~~~~~------~a~v~y~~se~f-~~~------~v~a~~~~~~~~Fk~-~y-~ 175 (408)
T COG0593 113 YNPLFIYGGVGLGKTH--LLQAIGNEALANGP------NARVVYLTSEDF-TND------FVKALRDNEMEKFKE-KY-S 175 (408)
T ss_pred CCcEEEECCCCCCHHH--HHHHHHHHHHhhCC------CceEEeccHHHH-HHH------HHHHHHhhhHHHHHH-hh-c
Confidence 4678999999999996 3323322 222210 335555543221 111 111111110 111 24 8
Q ss_pred eEEEEEcccchhccc-CChhHHHHHHHhhcC-CCcEEEecCCCChHHHHH
Q 042373 234 VTYLVLDEADRMFDM-GFEPQITRIVQNIRP-DRQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 234 l~~lVlDEaD~ml~~-gf~~~i~~Il~~l~~-~~Q~ilfSAT~~~~v~~l 281 (494)
+++|++|.++.+-.. .....+..+++.+.. +.|+++.|-..|.++..+
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc
Confidence 899999999988754 345667777777754 458888888888777543
|
|
| >KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.19 Score=53.37 Aligned_cols=79 Identities=20% Similarity=0.229 Sum_probs=41.6
Q ss_pred HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh-hhh-HHHHHHHhcCcceecccc
Q 042373 156 ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV-RRG-RMIDLLCKNGVKITNLTR 233 (494)
Q Consensus 156 l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~-TPg-rl~dll~~~~~~~~~l~~ 233 (494)
|..-|+|+.+|||||||+. .-.|.++++ -|.+|-=|-|-.-|-=++ .-. .+..+|.....+ +.--.
T Consensus 224 LeKSNvLllGPtGsGKTll--aqTLAr~ld---------VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~n-VekAQ 291 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLL--AQTLARVLD---------VPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYN-VEKAQ 291 (564)
T ss_pred eecccEEEECCCCCchhHH--HHHHHHHhC---------CCeEEecccchhhcccccccHHHHHHHHHHHccCC-HHHHh
Confidence 3446899999999999973 345666655 344443333321111010 001 122333332221 11123
Q ss_pred eEEEEEcccchhc
Q 042373 234 VTYLVLDEADRMF 246 (494)
Q Consensus 234 l~~lVlDEaD~ml 246 (494)
=..|+|||+|.|.
T Consensus 292 qGIVflDEvDKi~ 304 (564)
T KOG0745|consen 292 QGIVFLDEVDKIT 304 (564)
T ss_pred cCeEEEehhhhhc
Confidence 3579999999988
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.49 Score=50.44 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=46.5
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
..++++||+|+|||..... +...+ ++..+.+..+..-..++ ..+++..... ....+-.+|+
T Consensus 37 ~~ilL~GppGtGKTtLA~~-ia~~~-----------~~~~~~l~a~~~~~~~i---r~ii~~~~~~----~~~g~~~vL~ 97 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI-IAGAT-----------DAPFEALSAVTSGVKDL---REVIEEARQR----RSAGRRTILF 97 (413)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHh-----------CCCEEEEecccccHHHH---HHHHHHHHHh----hhcCCceEEE
Confidence 3789999999999964332 22211 23344444432222211 1122222110 0122457899
Q ss_pred EcccchhcccCChhHHHHHHHhhcCCCcEEEecCC
Q 042373 239 LDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 239 lDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
|||+|+|.. .+...++..+.. ..++++.+|
T Consensus 98 IDEi~~l~~----~~q~~LL~~le~-~~iilI~at 127 (413)
T PRK13342 98 IDEIHRFNK----AQQDALLPHVED-GTITLIGAT 127 (413)
T ss_pred EechhhhCH----HHHHHHHHHhhc-CcEEEEEeC
Confidence 999999763 233444555533 455566555
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.57 E-value=1.2 Score=44.94 Aligned_cols=100 Identities=17% Similarity=0.190 Sum_probs=48.3
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
.++++|++|+|||.+.. -+...+.... . ....+.+.++....... -...+..+..... ..-...++||+
T Consensus 40 ~~ll~G~~G~GKt~~~~-~l~~~l~~~~-----~-~~~~i~~~~~~~~~~~~-~~~~i~~~~~~~~---~~~~~~~vvii 108 (319)
T PRK00440 40 HLLFAGPPGTGKTTAAL-ALARELYGED-----W-RENFLELNASDERGIDV-IRNKIKEFARTAP---VGGAPFKIIFL 108 (319)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHcCCc-----c-ccceEEeccccccchHH-HHHHHHHHHhcCC---CCCCCceEEEE
Confidence 58999999999996443 2344433211 0 11233332222111100 0011222222110 11134679999
Q ss_pred cccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 240 DEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 240 DEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
||+|.+.... ...+..+++..+....+|+.+
T Consensus 109 De~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 109 DEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred eCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 9999886432 344555566555555555544
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.41 Score=48.38 Aligned_cols=87 Identities=17% Similarity=0.095 Sum_probs=47.2
Q ss_pred CCC-EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCC-------------CCCeEEEEccchhHHHhhhhhhHHHHHHHh
Q 042373 158 GLD-SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGD-------------DSPVGLVMAPTGELVRQQVRRGRMIDLLCK 223 (494)
Q Consensus 158 grd-vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~-------------~~p~aLIl~PTreLa~Qi~TPgrl~dll~~ 223 (494)
+.. +++++|.|+|||.+.. .+.+.+....+..... ..|..+.+.|.-.=-..+ ....+.++...
T Consensus 23 ~~halL~~Gp~G~Gktt~a~-~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i-~~~~vr~~~~~ 100 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAAL-ALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDI-IVEQVRELAEF 100 (325)
T ss_pred CCceeeeeCCCCCCHHHHHH-HHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcc-hHHHHHHHHHH
Confidence 345 9999999999997644 3445554322111111 135667776654322110 11122233322
Q ss_pred cCcceecccceEEEEEcccchhcc
Q 042373 224 NGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 224 ~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
... .......+++++||||.|..
T Consensus 101 ~~~-~~~~~~~kviiidead~mt~ 123 (325)
T COG0470 101 LSE-SPLEGGYKVVIIDEADKLTE 123 (325)
T ss_pred hcc-CCCCCCceEEEeCcHHHHhH
Confidence 111 11236789999999999985
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.86 Score=52.79 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=18.5
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHh
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQN 260 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~ 260 (494)
..+.+|||||+|.|...+ ...+..+++.
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHH
Confidence 346789999999998642 3334445543
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.37 Score=51.89 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=26.5
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhh
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlaf 175 (494)
-|-......+..+..++++++.+++|+|||...
T Consensus 179 i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 179 IPETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 345556667778888999999999999999654
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=92.44 E-value=1.7 Score=49.92 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=54.7
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----hhhhHHHHHHHhcCcceecccce
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----VRRGRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----~TPgrl~dll~~~~~~~~~l~~l 234 (494)
.++|+++|+|+|||...- -+.+.+.... ....-.+...+. +....|..-. ....++..++..-.. ..=
T Consensus 204 ~n~lL~G~pG~GKT~l~~-~la~~~~~~~-~p~~l~~~~~~~-~~~~~l~a~~~~~g~~e~~l~~i~~~~~~-----~~~ 275 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE-GLALRIAEGK-VPENLKNAKIYS-LDMGSLLAGTKYRGDFEERLKAVVSEIEK-----EPN 275 (731)
T ss_pred CceEEECCCCCCHHHHHH-HHHHHHHhCC-CchhhcCCeEEE-ecHHHHhhhccccchHHHHHHHHHHHHhc-----cCC
Confidence 599999999999997533 3333333221 000011233333 3333333211 122355555543110 112
Q ss_pred EEEEEcccchhcccCC----hhHHHHHHHhhcCCCcEEEecCCCChHH
Q 042373 235 TYLVLDEADRMFDMGF----EPQITRIVQNIRPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 235 ~~lVlDEaD~ml~~gf----~~~i~~Il~~l~~~~Q~ilfSAT~~~~v 278 (494)
.+|++||+|.++..|- ...+..++...-....+.++.||-+.+.
T Consensus 276 ~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 276 AILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEY 323 (731)
T ss_pred eEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHH
Confidence 4799999999986432 1123333332222345666667765443
|
|
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.42 E-value=1 Score=51.19 Aligned_cols=128 Identities=20% Similarity=0.221 Sum_probs=76.7
Q ss_pred HHHHHhCCCCCCChhHHHHHHHHHcCC--CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 133 LETFSKLNHENPVAIQAPASALIISGL--DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 133 l~~l~~~g~~~ptpiQ~~aip~il~gr--dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
-..+..+..+.+..-|.+.+..++.++ -+++.|.-|-|||.+..+.+........ .-.++|.+||.+-+..
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-------~~~iiVTAP~~~nv~~ 276 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-------SVRIIVTAPTPANVQT 276 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-------CceEEEeCCCHHHHHH
Confidence 344566656666677777777777664 5788899999999998887733332210 3478999999998876
Q ss_pred hh-hhhHHHHHHHh------cC---ccee--ccc------------ceEEEEEcccchhcccCChhHHHHHHHhhcCCCc
Q 042373 211 QV-RRGRMIDLLCK------NG---VKIT--NLT------------RVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQ 266 (494)
Q Consensus 211 i~-TPgrl~dll~~------~~---~~~~--~l~------------~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q 266 (494)
+. --++-++.+.. .. .... +.. .-++||+|||=.|- .+.+.+++... +
T Consensus 277 Lf~fa~~~l~~lg~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~~~~DllvVDEAAaIp----lplL~~l~~~~----~ 348 (758)
T COG1444 277 LFEFAGKGLEFLGYKRKVAPDALGEIREVSGDGFRIEYVPPDDAQEEADLLVVDEAAAIP----LPLLHKLLRRF----P 348 (758)
T ss_pred HHHHHHHhHHHhCCccccccccccceeeecCCceeEEeeCcchhcccCCEEEEehhhcCC----hHHHHHHHhhc----C
Confidence 61 11111222210 00 0000 000 16789999996554 45566555543 4
Q ss_pred EEEecCCCC
Q 042373 267 AVLFSPTFP 275 (494)
Q Consensus 267 ~ilfSAT~~ 275 (494)
.++||.|+.
T Consensus 349 rv~~sTTIh 357 (758)
T COG1444 349 RVLFSTTIH 357 (758)
T ss_pred ceEEEeeec
Confidence 677777764
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.72 Score=48.50 Aligned_cols=25 Identities=20% Similarity=0.326 Sum_probs=17.7
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.|+++.|+||+|||..--. ++..+.
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l~ 67 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEELE 67 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHHH
Confidence 3799999999999975433 334443
|
|
| >PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.85 Score=45.17 Aligned_cols=37 Identities=22% Similarity=0.107 Sum_probs=24.4
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP 203 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P 203 (494)
.=+++.|+||.|||. |++-+..++.... +..+++++.
T Consensus 20 ~L~vi~a~pg~GKT~-~~l~ia~~~a~~~-------~~~vly~Sl 56 (259)
T PF03796_consen 20 ELTVIAARPGVGKTA-FALQIALNAALNG-------GYPVLYFSL 56 (259)
T ss_dssp -EEEEEESTTSSHHH-HHHHHHHHHHHTT-------SSEEEEEES
T ss_pred cEEEEEecccCCchH-HHHHHHHHHHHhc-------CCeEEEEcC
Confidence 345677999999995 5555665554431 456788874
|
Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C .... |
| >PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.2 Score=47.59 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=25.1
Q ss_pred ceEEEEEcccchhcccCCh-----hHHHHHHHhhcCCCcEEEecCCCChHHHHHHH
Q 042373 233 RVTYLVLDEADRMFDMGFE-----PQITRIVQNIRPDRQAVLFSPTFPPRVEILAR 283 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~gf~-----~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~ 283 (494)
.=.++||||||..+..... +.+...+...+.....++|...-+..+....+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir 134 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIR 134 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHH
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHH
Confidence 4578999999998865433 12224444445444455555544454544443
|
Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B. |
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.61 Score=48.87 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=16.3
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHH
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l 183 (494)
-++++||.|+|||..... +...+
T Consensus 40 ~~L~~Gp~G~GKTtla~~-la~~l 62 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL-LAKSL 62 (363)
T ss_pred EEEEecCCCCCHHHHHHH-HHHHh
Confidence 368999999999975443 33444
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=92.18 E-value=1.2 Score=49.92 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=30.9
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC---CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG---LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g---rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.+|+++=-++.+++.|.. .+.+| +.+|+++|.|+|||....+ +...++
T Consensus 21 ~~f~dliGq~~~v~~L~~---------------~~~~gri~ha~L~~Gp~GvGKTt~Ar~-lAk~L~ 71 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTN---------------AFETGRIAQAFMLTGVRGVGKTTTARI-LARALN 71 (598)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCceEEEECCCCCCHHHHHHH-HHHhhC
Confidence 467776556666666654 22334 3689999999999975544 334443
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.21 Score=54.64 Aligned_cols=49 Identities=27% Similarity=0.462 Sum_probs=28.9
Q ss_pred HHcCCCEEEEcCCCCCchhhhHHHHHHHHHc---CCCCCCCCCCCeEEEEccch
Q 042373 155 IISGLDSVAITETGSGKTLAFLLPMLRHIWE---QPPVVPGDDSPVGLVMAPTG 205 (494)
Q Consensus 155 il~grdvi~~a~TGSGKTlafllpil~~l~~---~~~~~~~~~~p~aLIl~PTr 205 (494)
+-+|+++++++|+|+|||-.+ -++.-+.. ..-..+.+.+|.-|+.+|-|
T Consensus 458 V~~g~~LLItG~sG~GKtSLl--RvlggLWp~~~G~l~k~~~~~~~~lfflPQr 509 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLL--RVLGGLWPSTGGKLTKPTDGGPKDLFFLPQR 509 (659)
T ss_pred ecCCCeEEEECCCCCchhHHH--HHHhcccccCCCeEEecccCCCCceEEecCC
Confidence 457999999999999999632 33333221 11112233355656666654
|
|
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.55 Score=54.17 Aligned_cols=79 Identities=18% Similarity=0.064 Sum_probs=53.5
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCE-EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDS-VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdv-i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
+..-....+.+.+... -+..+..-|++|+-.++..+|. ++.+=+|||||..... +++.+... |.++
T Consensus 650 f~~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~~--------gkkV 716 (1100)
T KOG1805|consen 650 FVDALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVAL--------GKKV 716 (1100)
T ss_pred hhcccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHHc--------CCeE
Confidence 3333445566666664 2446788999999999988765 6779999999975433 33333322 6678
Q ss_pred EEEccchhHHHhh
Q 042373 199 LVMAPTGELVRQQ 211 (494)
Q Consensus 199 LIl~PTreLa~Qi 211 (494)
|+.+=|..-+..+
T Consensus 717 LLtsyThsAVDNI 729 (1100)
T KOG1805|consen 717 LLTSYTHSAVDNI 729 (1100)
T ss_pred EEEehhhHHHHHH
Confidence 8888887666555
|
|
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.39 Score=50.60 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=32.8
Q ss_pred CCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
..+.++.++|+++.+++.+. ..+..+++++|||||||. ++-.++.++..
T Consensus 127 ~~~~~l~~lgl~~~~~~~l~------------------~~~GlilI~G~TGSGKTT-~l~al~~~i~~ 175 (372)
T TIGR02525 127 SDIPDLKQMGIEPDLFNSLL------------------PAAGLGLICGETGSGKST-LAASIYQHCGE 175 (372)
T ss_pred CcCCCHHHcCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHH-HHHHHHHHHHh
Confidence 33446777787776654332 124468999999999995 45567777754
|
Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). |
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.49 Score=46.26 Aligned_cols=40 Identities=13% Similarity=0.205 Sum_probs=24.0
Q ss_pred EEEEEcccchhcccCChhHHHHHHHhhcC-CCcEEEecCCCCh
Q 042373 235 TYLVLDEADRMFDMGFEPQITRIVQNIRP-DRQAVLFSPTFPP 276 (494)
Q Consensus 235 ~~lVlDEaD~ml~~gf~~~i~~Il~~l~~-~~Q~ilfSAT~~~ 276 (494)
.+|++|++|.+- .....+..+++.+.. ++++|+.|.+-|+
T Consensus 89 ~~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~p~ 129 (226)
T PRK09087 89 GPVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLWPS 129 (226)
T ss_pred CeEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCChH
Confidence 479999999763 234556666666654 4454444444443
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=91.93 E-value=1.2 Score=52.11 Aligned_cols=116 Identities=18% Similarity=0.122 Sum_probs=54.9
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----hhhhHHHHHHHhcCcceecccce
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----VRRGRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----~TPgrl~dll~~~~~~~~~l~~l 234 (494)
.++|+++++|+|||...- -+...+.... ....-.+...+.+... .|.... ....++..++..-. .-..-
T Consensus 200 ~n~lL~G~pGvGKT~l~~-~la~~i~~~~-vp~~l~~~~~~~l~l~-~l~ag~~~~g~~e~~lk~~~~~~~----~~~~~ 272 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE-GLAQRIINGE-VPEGLKGRRVLALDMG-ALVAGAKYRGEFEERLKGVLNDLA----KQEGN 272 (857)
T ss_pred CceEEECCCCCCHHHHHH-HHHHHhhcCC-CchhhCCCEEEEEehh-hhhhccchhhhhHHHHHHHHHHHH----HcCCC
Confidence 499999999999996442 2333332211 0000013333333222 332211 11234555544210 00123
Q ss_pred EEEEEcccchhcccCC---hhHHHHHHHhhcCCCcEEEecCCCChHHHHH
Q 042373 235 TYLVLDEADRMFDMGF---EPQITRIVQNIRPDRQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 235 ~~lVlDEaD~ml~~gf---~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l 281 (494)
.+|++||+|.|...|- ......++...-..-.+.+..||-+++...+
T Consensus 273 ~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~ 322 (857)
T PRK10865 273 VILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQY 322 (857)
T ss_pred eEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHH
Confidence 5899999999985431 1123333332222334555556666665443
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.32 Score=46.40 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=16.7
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHH
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~ 184 (494)
+++++|||||||... ..++..+.
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhh
Confidence 678899999999753 44555553
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.31 Score=54.34 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=21.3
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.+++++++++||||||. ++-.++.++.
T Consensus 256 ~~~~ILIsG~TGSGKTT-ll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKST-FAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHHh
Confidence 46789999999999995 4556666664
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.77 Score=53.30 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=25.2
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHH
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v 278 (494)
.+.+++||||||+|-... ...+.++++.-+....+|+. .|-+..+
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa-TTe~~kL 162 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA-TTDPQKL 162 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE-CCCchhc
Confidence 467899999999986332 23333444443334444443 4544443
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.75 Score=52.64 Aligned_cols=112 Identities=16% Similarity=0.113 Sum_probs=61.8
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchh--HHHhh--------------hhhhHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE--LVRQQ--------------VRRGRMIDLL 221 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTre--La~Qi--------------~TPgrl~dll 221 (494)
|+=+.+++|||+|||.+...-.-....... . ...+||-+-|.- -..|. .+|..+.+.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G-----~-kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al 258 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREG-----A-DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFAL 258 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcC-----C-CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHH
Confidence 455788999999999866543332222210 0 123444444422 23443 3455555545
Q ss_pred HhcCcceecccceEEEEEcccchhccc-CChhHHHHHHHhhcCCCcEEEecCCCChH-HHHHH
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMFDM-GFEPQITRIVQNIRPDRQAVLFSPTFPPR-VEILA 282 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml~~-gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~-v~~l~ 282 (494)
.. +.+.++|+||=+-+.... ....++..+.....+..-++++|||.... +..++
T Consensus 259 ~~-------~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~ 314 (767)
T PRK14723 259 AA-------LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV 314 (767)
T ss_pred HH-------hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH
Confidence 42 456689999999876522 22334444444445566678889987543 33344
|
|
| >KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.70 E-value=1.6 Score=45.88 Aligned_cols=121 Identities=16% Similarity=0.198 Sum_probs=68.7
Q ss_pred ChhHHHHHHHHHcCCCE------EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc-----chhHHHhh--
Q 042373 145 VAIQAPASALIISGLDS------VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP-----TGELVRQQ-- 211 (494)
Q Consensus 145 tpiQ~~aip~il~grdv------i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P-----TreLa~Qi-- 211 (494)
...|...+..++..++. ++.|.+|||||. +++.++... +...+.+.+ .+-|-.++
T Consensus 11 Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~-----~~r~~l~~~-------n~~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 11 RESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTY-----LVRQLLRKL-------NLENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred hHHHHHHHHHHhCCCCcccceeEEEeccCCCchhH-----HHHHHHhhc-------CCcceeeehHHhccHHHHHHHHHH
Confidence 45688888888877654 788999999995 333333322 112233322 23333333
Q ss_pred -------------hhhhHHHHHH---HhcCcceecccceEEEEEcccchhcccC--ChhHHHHHHHhhcCCCcEEEecCC
Q 042373 212 -------------VRRGRMIDLL---CKNGVKITNLTRVTYLVLDEADRMFDMG--FEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 212 -------------~TPgrl~dll---~~~~~~~~~l~~l~~lVlDEaD~ml~~g--f~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
.+-.-+.+++ ..- ....+....-++|+|-||.+-|++ ..+.+-++-.-++...-.+.||++
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~-~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~ 157 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQW-PAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP 157 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhh-HHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecc
Confidence 1111222222 210 011122456799999999999987 344555555556656667788998
Q ss_pred CChHH
Q 042373 274 FPPRV 278 (494)
Q Consensus 274 ~~~~v 278 (494)
+.+..
T Consensus 158 ~~e~~ 162 (438)
T KOG2543|consen 158 SCEKQ 162 (438)
T ss_pred ccHHH
Confidence 87653
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=91.68 E-value=1 Score=52.35 Aligned_cols=116 Identities=15% Similarity=0.078 Sum_probs=55.8
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---hhhhHHHHHHHhcCcceecccceE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---VRRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---~TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
+++|++|++|+|||...-. +...+.... ......+...+.+-.+.-++-.- -.-.++..++..-. -..-.
T Consensus 201 ~n~lL~G~pGvGKTal~~~-la~~i~~~~-vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~-----~~~~~ 273 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEG-LAQRIVNRD-VPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQ-----ENNNI 273 (821)
T ss_pred CCeEEECCCCCCHHHHHHH-HHHHHHhCC-CChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHH-----hcCCe
Confidence 5999999999999975433 233332211 00111133444443333332110 01225555554310 01234
Q ss_pred EEEEcccchhcccCCh---hHHHHHHHhhcCCCcEEEecCCCChHHHHH
Q 042373 236 YLVLDEADRMFDMGFE---PQITRIVQNIRPDRQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 236 ~lVlDEaD~ml~~gf~---~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l 281 (494)
+|++||+|.++..|.. ..+..++...-....+.++.||-+.+....
T Consensus 274 ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 274 ILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKH 322 (821)
T ss_pred EEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHH
Confidence 8999999999875421 123344432212223334446656655443
|
|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.47 Score=49.24 Aligned_cols=29 Identities=34% Similarity=0.400 Sum_probs=21.7
Q ss_pred HHHcCCCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 154 LIISGLDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 154 ~il~grdvi~~a~TGSGKTlafllpil~~l 183 (494)
++..+++++++++||||||. ++-.++..+
T Consensus 156 ~v~~~~nili~G~tgSGKTT-ll~aL~~~i 184 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTT-FTNAALREI 184 (332)
T ss_pred HHHcCCcEEEECCCCCCHHH-HHHHHHhhC
Confidence 44567899999999999995 444555554
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.76 Score=51.85 Aligned_cols=71 Identities=24% Similarity=0.231 Sum_probs=37.2
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
.+.+++.+|+|+|||+..- .+..-.. .| ++-+..-++.... .+..++.+++.... -..-.
T Consensus 216 p~gVLL~GPpGTGKT~LAr--alA~e~~---------~p--~i~is~s~f~~~~~g~~~~~vr~lF~~A~-----~~~P~ 277 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAK--AIAGEAE---------VP--FFSISGSEFVEMFVGVGAARVRDLFKKAK-----ENSPC 277 (638)
T ss_pred CceEEEECCCCCCHHHHHH--HHHHHhC---------CC--eeeccHHHHHHHhhhhhHHHHHHHHHHHh-----cCCCc
Confidence 3679999999999997332 2211110 22 2222222222211 12234555554321 12335
Q ss_pred EEEEcccchhc
Q 042373 236 YLVLDEADRMF 246 (494)
Q Consensus 236 ~lVlDEaD~ml 246 (494)
+|++||+|.+.
T Consensus 278 ILfIDEID~l~ 288 (638)
T CHL00176 278 IVFIDEIDAVG 288 (638)
T ss_pred EEEEecchhhh
Confidence 89999999986
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.74 Score=50.51 Aligned_cols=91 Identities=13% Similarity=0.052 Sum_probs=45.1
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCC-C-----------CCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcc
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVV-P-----------GDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVK 227 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~-~-----------~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~ 227 (494)
-+++++|.|+|||.+.. .+...+....+.. . ....+.++.|.+..... +..-..+.+.+...
T Consensus 38 a~Lf~GppGtGKTTlA~-~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~--vd~iR~l~~~~~~~--- 111 (504)
T PRK14963 38 AYLFSGPRGVGKTTTAR-LIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNS--VEDVRDLREKVLLA--- 111 (504)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCC--HHHHHHHHHHHhhc---
Confidence 35999999999997654 3444443211100 0 01134455555431110 00001122222221
Q ss_pred eecccceEEEEEcccchhcccCChhHHHHHHHhh
Q 042373 228 ITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI 261 (494)
Q Consensus 228 ~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l 261 (494)
-.+.+.++|||||+|.|.. ..+..+++.+
T Consensus 112 -p~~~~~kVVIIDEad~ls~----~a~naLLk~L 140 (504)
T PRK14963 112 -PLRGGRKVYILDEAHMMSK----SAFNALLKTL 140 (504)
T ss_pred -cccCCCeEEEEECccccCH----HHHHHHHHHH
Confidence 1245678999999998753 3344555555
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.40 E-value=1.2 Score=46.37 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=18.1
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
+.++++||.|+|||.... -+..++..
T Consensus 40 ~~~L~~G~~G~GKt~~a~-~la~~l~~ 65 (367)
T PRK14970 40 QALLFCGPRGVGKTTCAR-ILARKINQ 65 (367)
T ss_pred eEEEEECCCCCCHHHHHH-HHHHHhcC
Confidence 478899999999995433 34555543
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.31 E-value=1.1 Score=48.98 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=27.5
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC---CCEEEEcCCCCCchhhhH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG---LDSVAITETGSGKTLAFL 176 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g---rdvi~~a~TGSGKTlafl 176 (494)
.+|+++=-++.+.+.|+. .+..| +.+|++||.|+|||.+..
T Consensus 10 ~~f~dliGQe~vv~~L~~---------------a~~~~ri~ha~Lf~Gp~G~GKTT~Ar 53 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRN---------------AFTLNKIPQSILLVGASGVGKTTCAR 53 (491)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCceEEEECCCCccHHHHHH
Confidence 566666556666666542 23334 468999999999997544
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=91.26 E-value=1 Score=52.60 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=55.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhh----hHHHHHHHhcCcceecccce
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRR----GRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TP----grl~dll~~~~~~~~~l~~l 234 (494)
.+++++||+|+|||...- -+...+..... ...-.+...+.+- ...|....... .++..++..- .....-
T Consensus 195 ~n~lL~G~pGvGKT~l~~-~la~~i~~~~~-p~~l~~~~~~~l~-~~~l~a~~~~~g~~e~~l~~~l~~~----~~~~~~ 267 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE-GLAQRIVNGDV-PESLKNKRLLALD-MGALIAGAKYRGEFEERLKAVLNEV----TKSEGQ 267 (852)
T ss_pred CceEEEcCCCCCHHHHHH-HHHHHHhccCC-chhhcCCeEEEee-HHHHhhcchhhhhHHHHHHHHHHHH----HhcCCC
Confidence 599999999999996443 23333322110 0000133334332 22332111111 2444444421 011234
Q ss_pred EEEEEcccchhcccCCh---hHHHHHHHhhcCCCcEEEecCCCChHHHH
Q 042373 235 TYLVLDEADRMFDMGFE---PQITRIVQNIRPDRQAVLFSPTFPPRVEI 280 (494)
Q Consensus 235 ~~lVlDEaD~ml~~gf~---~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~ 280 (494)
.+|++||+|.|...|.. .+...++...-....+.++.||-.++...
T Consensus 268 ~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 268 IILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRK 316 (852)
T ss_pred eEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHH
Confidence 68999999999864422 12333333222233455555666665544
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.42 Score=49.17 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=36.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
+.+++++|+|+|||.... -+.+.+ . .....+-.|.. ..++.+..++.. +..-.+|+
T Consensus 52 ~~~ll~GppG~GKT~la~-~ia~~l-~---------~~~~~~~~~~~------~~~~~l~~~l~~-------l~~~~vl~ 107 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN-IIANEM-G---------VNIRITSGPAL------EKPGDLAAILTN-------LEEGDVLF 107 (328)
T ss_pred CcEEEECCCCccHHHHHH-HHHHHh-C---------CCeEEEecccc------cChHHHHHHHHh-------cccCCEEE
Confidence 579999999999996443 222222 1 11111112211 122334444432 34557999
Q ss_pred Ecccchhcc
Q 042373 239 LDEADRMFD 247 (494)
Q Consensus 239 lDEaD~ml~ 247 (494)
+||+|++..
T Consensus 108 IDEi~~l~~ 116 (328)
T PRK00080 108 IDEIHRLSP 116 (328)
T ss_pred EecHhhcch
Confidence 999999863
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.44 Score=49.96 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=20.5
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
.+.-+++++|||||||.. +-.++..+..
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh
Confidence 466799999999999964 3446666543
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.18 E-value=2.1 Score=44.26 Aligned_cols=119 Identities=14% Similarity=0.207 Sum_probs=64.4
Q ss_pred CChhHHHHHHHHH----cCC---CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC-------------CCCCCeEEEEcc
Q 042373 144 PVAIQAPASALII----SGL---DSVAITETGSGKTLAFLLPMLRHIWEQPPVVP-------------GDDSPVGLVMAP 203 (494)
Q Consensus 144 ptpiQ~~aip~il----~gr---dvi~~a~TGSGKTlafllpil~~l~~~~~~~~-------------~~~~p~aLIl~P 203 (494)
..|+|...|..+. +|| -.+++||.|.||+.... -+.+.++-..+... ....|-..++.|
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~-~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIR-ALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHH-HHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 3677877777665 443 67799999999996443 34445543221110 123677777877
Q ss_pred chh---HHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 204 TGE---LVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 204 Tre---La~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
... -+.|+ ..+.+.+... -.-...+++|+|+||+|.... ...+-++++.-++...+++.|
T Consensus 82 ~~~~~I~id~i---R~l~~~~~~~----~~~g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~~fiL~t 144 (325)
T PRK06871 82 IDNKDIGVDQV---REINEKVSQH----AQQGGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNTYFLLQA 144 (325)
T ss_pred ccCCCCCHHHH---HHHHHHHhhc----cccCCceEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 411 12221 1233333322 124567899999999998432 333344444433344444433
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.43 Score=52.39 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=24.3
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
.+.+++|+||+|+|....| ..+.++++..++...+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999998875443 33444555544455555443
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=1.4 Score=47.13 Aligned_cols=113 Identities=17% Similarity=0.115 Sum_probs=56.2
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHH--Hhh--------------hhhhHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELV--RQQ--------------VRRGRMIDL 220 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa--~Qi--------------~TPgrl~dl 220 (494)
.|+-+.++++||+|||.....-.-..+..... ...++|.+.+.-.+ .|. .++..+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~------~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~a 263 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGA------DKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLM 263 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC------CeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHH
Confidence 45567888999999998654322222222110 23467777763322 222 122222222
Q ss_pred HHhcCcceecccceEEEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChH-HHHHH
Q 042373 221 LCKNGVKITNLTRVTYLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPR-VEILA 282 (494)
Q Consensus 221 l~~~~~~~~~l~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~-v~~l~ 282 (494)
+ ..++..+++++|.+-+.-. .....++..+.....+..-++++|||.... +...+
T Consensus 264 l-------~~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~ 320 (420)
T PRK14721 264 L-------HELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI 320 (420)
T ss_pred H-------HHhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH
Confidence 2 2356778899998743221 111223333322222344567788886544 33333
|
|
| >KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.15 E-value=2 Score=43.10 Aligned_cols=112 Identities=20% Similarity=0.226 Sum_probs=62.9
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHH-cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCe
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALII-SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPV 197 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il-~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~ 197 (494)
|=.++++.|=+++-++.|++. .+.|.-.-...+..-. --+-+++.+|+|+|||++.-. + .++ .--
T Consensus 172 pdvty~dvggckeqieklrev-ve~pll~perfv~lgidppkgvllygppgtgktl~ara-----v-anr-------tda 237 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREV-VELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARA-----V-ANR-------TDA 237 (435)
T ss_pred CCcccccccchHHHHHHHHHH-HhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHH-----H-hcc-------cCc
Confidence 445677777777666666553 2222222222222111 127899999999999986432 2 221 223
Q ss_pred EEEEccchhHHHhh-hhhhHHHHHHHhcCcceecccceEEEEEcccchhccc
Q 042373 198 GLVMAPTGELVRQQ-VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDM 248 (494)
Q Consensus 198 aLIl~PTreLa~Qi-~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~ 248 (494)
+.|=+=--||++.. +.-.|+..-|-.- ..-..-+++.+||+|.+-..
T Consensus 238 cfirvigselvqkyvgegarmvrelf~m----artkkaciiffdeidaigga 285 (435)
T KOG0729|consen 238 CFIRVIGSELVQKYVGEGARMVRELFEM----ARTKKACIIFFDEIDAIGGA 285 (435)
T ss_pred eEEeehhHHHHHHHhhhhHHHHHHHHHH----hcccceEEEEeeccccccCc
Confidence 55556667888765 3444554433321 12345678999999987643
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.12 E-value=2 Score=44.60 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=58.3
Q ss_pred CChhHHHHHHHHH----cCC---CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC-------------CCCCCeEEEEcc
Q 042373 144 PVAIQAPASALII----SGL---DSVAITETGSGKTLAFLLPMLRHIWEQPPVVP-------------GDDSPVGLVMAP 203 (494)
Q Consensus 144 ptpiQ~~aip~il----~gr---dvi~~a~TGSGKTlafllpil~~l~~~~~~~~-------------~~~~p~aLIl~P 203 (494)
..|+|...|..+. +|| -.++.||.|+||+... ..+.+.++-..+... ....|-..++.|
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA-~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALI-YALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP 81 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHH-HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec
Confidence 5688888887765 443 6789999999999543 334445543221111 123677888887
Q ss_pred chh----HHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhccc
Q 042373 204 TGE----LVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDM 248 (494)
Q Consensus 204 Tre----La~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~ 248 (494)
... -+.|+ ..+.+.+... -.....+++|+|+||+|...
T Consensus 82 ~~~~~~I~idqi---R~l~~~~~~~----~~~g~~kV~iI~~ae~m~~~ 123 (334)
T PRK07993 82 EKGKSSLGVDAV---REVTEKLYEH----ARLGGAKVVWLPDAALLTDA 123 (334)
T ss_pred ccccccCCHHHH---HHHHHHHhhc----cccCCceEEEEcchHhhCHH
Confidence 532 12222 1233333322 23467899999999999843
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.63 Score=53.22 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=23.0
Q ss_pred ceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCC
Q 042373 233 RVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFP 275 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~ 275 (494)
+-.+|||||+|+|... +...++..+. ..+++++++|-+
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~lE-~g~IiLI~aTTe 146 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWVE-NGTITLIGATTE 146 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHhc-CceEEEEEecCC
Confidence 4568999999987632 2233344332 356667666643
|
|
| >KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.09 E-value=1.5 Score=47.64 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=33.0
Q ss_pred CCCCCChhHHHHHHHHH----cCCCEEEEcCCCCCchhhhHHHHHHHHHcCC
Q 042373 140 NHENPVAIQAPASALII----SGLDSVAITETGSGKTLAFLLPMLRHIWEQP 187 (494)
Q Consensus 140 g~~~ptpiQ~~aip~il----~grdvi~~a~TGSGKTlafllpil~~l~~~~ 187 (494)
-|..-.|-|-+-.--+- .+-+.++-.|+|+|||.+.+--++..-++.+
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p 64 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP 64 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC
Confidence 35566677765544332 4568899999999999887766666655543
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.54 Score=52.86 Aligned_cols=41 Identities=12% Similarity=0.197 Sum_probs=24.2
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCC
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~ 274 (494)
.+.+++||||+|+|....+ ..+.++++..+....+|+ .+|-
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FIL-aTtd 157 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLF-ATTD 157 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEE-EECC
Confidence 4568999999998865433 344445554444444444 4443
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=91.08 E-value=3.1 Score=49.41 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=40.6
Q ss_pred Cccce-eeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc-----eEEEEeccc
Q 042373 287 VCNLS-IANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS-----CAFRFISEE 341 (494)
Q Consensus 287 ~~~IL-VaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G-----~aitfv~~~ 341 (494)
.+++| ++|.|.+-|+++.+.+.||.++--.++..=+|-+-||.|-| .+|.|++..
T Consensus 1394 tIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1394 TIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred ceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 45554 57789999999999999999988777666666555543333 478888876
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.82 Score=49.74 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=14.0
Q ss_pred CEEEEcCCCCCchhhhH
Q 042373 160 DSVAITETGSGKTLAFL 176 (494)
Q Consensus 160 dvi~~a~TGSGKTlafl 176 (494)
.+|++||+|+|||....
T Consensus 38 ~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 38 AYIFAGPRGTGKTTVAR 54 (472)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37999999999996544
|
|
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.27 Score=46.05 Aligned_cols=78 Identities=18% Similarity=0.115 Sum_probs=40.2
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
++++++|||+|||.. .-++..++.. .....++....-++.........+..++..... ......-.+|+|
T Consensus 5 ~~ll~GpsGvGKT~l--a~~la~~l~~-------~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~-~v~~~~~gVVll 74 (171)
T PF07724_consen 5 NFLLAGPSGVGKTEL--AKALAELLFV-------GSERPLIRIDMSEYSEGDDVESSVSKLLGSPPG-YVGAEEGGVVLL 74 (171)
T ss_dssp EEEEESSTTSSHHHH--HHHHHHHHT--------SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTC-HHHHHHHTEEEE
T ss_pred EEEEECCCCCCHHHH--HHHHHHHhcc-------CCccchHHHhhhcccccchHHhhhhhhhhcccc-eeeccchhhhhh
Confidence 578999999999952 2333333331 034566666666665521111111111211111 111122238999
Q ss_pred cccchhcc
Q 042373 240 DEADRMFD 247 (494)
Q Consensus 240 DEaD~ml~ 247 (494)
||+|....
T Consensus 75 DEidKa~~ 82 (171)
T PF07724_consen 75 DEIDKAHP 82 (171)
T ss_dssp ETGGGCSH
T ss_pred HHHhhccc
Confidence 99998775
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=90.85 E-value=1.3 Score=46.34 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=24.3
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
...+++||||||.|.... ...+.++++.-+....+++++
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 467899999999986433 334555555544444555554
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.21 Score=44.21 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=13.2
Q ss_pred CEEEEcCCCCCchhh
Q 042373 160 DSVAITETGSGKTLA 174 (494)
Q Consensus 160 dvi~~a~TGSGKTla 174 (494)
+|++.+++|+|||..
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 589999999999963
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.80 E-value=2.4 Score=46.36 Aligned_cols=135 Identities=18% Similarity=0.186 Sum_probs=73.8
Q ss_pred cCCCCHHHHHHHHhCCCCCCChhHHHHHHHH----Hc-------C-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCC
Q 042373 125 QTGLTTKILETFSKLNHENPVAIQAPASALI----IS-------G-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPG 192 (494)
Q Consensus 125 ~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~i----l~-------g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~ 192 (494)
.+|.+++-++.....|.-.-.|-=.+.+..- -+ + ..+++.+|.|||||....--.+ .
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~---~-------- 561 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL---S-------- 561 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh---h--------
Confidence 3588888888887776554444333333221 11 1 4789999999999963322111 1
Q ss_pred CCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccC-----ChhHHHH----HHHhhcC
Q 042373 193 DDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG-----FEPQITR----IVQNIRP 263 (494)
Q Consensus 193 ~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~g-----f~~~i~~----Il~~l~~ 263 (494)
..-|.+=|++|..-....- ..+. .++.+. ..-.+-+.+.++|+|+..+|+||. |...+-. +++..|+
T Consensus 562 S~FPFvKiiSpe~miG~sE--saKc-~~i~k~-F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~pp 637 (744)
T KOG0741|consen 562 SDFPFVKIISPEDMIGLSE--SAKC-AHIKKI-FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPP 637 (744)
T ss_pred cCCCeEEEeChHHccCccH--HHHH-HHHHHH-HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCC
Confidence 1268888888853322110 0011 111110 011234678899999999999985 4333332 2333344
Q ss_pred -CCcEEEecCCC
Q 042373 264 -DRQAVLFSPTF 274 (494)
Q Consensus 264 -~~Q~ilfSAT~ 274 (494)
++..+.|..|-
T Consensus 638 kg~kLli~~TTS 649 (744)
T KOG0741|consen 638 KGRKLLIFGTTS 649 (744)
T ss_pred CCceEEEEeccc
Confidence 45566665553
|
|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.32 Score=50.75 Aligned_cols=46 Identities=28% Similarity=0.269 Sum_probs=29.7
Q ss_pred HHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHH
Q 042373 153 ALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELV 208 (494)
Q Consensus 153 p~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa 208 (494)
-++..+++++++++||||||. ++-.++..+-. .-+.+.+=.+.||.
T Consensus 157 ~~v~~~~nilI~G~tGSGKTT-ll~aLl~~i~~---------~~rivtiEd~~El~ 202 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTT-MSKTLISAIPP---------QERLITIEDTLELV 202 (344)
T ss_pred HHHHcCCeEEEECCCCccHHH-HHHHHHcccCC---------CCCEEEECCCcccc
Confidence 345577899999999999995 33334433311 23456666677764
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=90.75 E-value=1.5 Score=45.35 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=68.0
Q ss_pred ChhHHHHHHHHHc--CC---CEEEEcCCCCCchhhhHHHHHHHHHcCCCCC---C-----------CCCCCeEEEEccch
Q 042373 145 VAIQAPASALIIS--GL---DSVAITETGSGKTLAFLLPMLRHIWEQPPVV---P-----------GDDSPVGLVMAPTG 205 (494)
Q Consensus 145 tpiQ~~aip~il~--gr---dvi~~a~TGSGKTlafllpil~~l~~~~~~~---~-----------~~~~p~aLIl~PTr 205 (494)
.|+|...|..+.. || -++++||.|+|||..... +...++-..+.. + ....|-..++.|+.
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~-~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~ 81 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF-AAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLS 81 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH-HHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccc
Confidence 6888888888873 33 588999999999964433 344444222110 0 12357788888853
Q ss_pred h-----------HHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCC
Q 042373 206 E-----------LVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 206 e-----------La~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
. -+.|+ ..+.+.+... -.....+++|+|++|.|-.. ....+.++++..+.... +++++.
T Consensus 82 ~~~~~g~~~~~I~id~i---R~l~~~~~~~----p~~~~~kV~iiEp~~~Ld~~-a~naLLk~LEep~~~~~-~Ilvth 151 (325)
T PRK08699 82 DEPENGRKLLQIKIDAV---REIIDNVYLT----SVRGGLRVILIHPAESMNLQ-AANSLLKVLEEPPPQVV-FLLVSH 151 (325)
T ss_pred ccccccccCCCcCHHHH---HHHHHHHhhC----cccCCceEEEEechhhCCHH-HHHHHHHHHHhCcCCCE-EEEEeC
Confidence 1 12222 1233333321 12456788999999988643 34555556665544433 444443
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.61 E-value=1.3 Score=44.51 Aligned_cols=70 Identities=19% Similarity=0.290 Sum_probs=41.1
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-hhhhH-HHHHHHhcCcceecccceEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-VRRGR-MIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-~TPgr-l~dll~~~~~~~~~l~~l~~ 236 (494)
|||++.+|+|+|||+ +...+.+. ...-++++..-+|.-.. +.-.| +..+..+.. -..-+.
T Consensus 152 knVLFyGppGTGKTm------~Akalane-------~kvp~l~vkat~liGehVGdgar~Ihely~rA~-----~~aPci 213 (368)
T COG1223 152 KNVLFYGPPGTGKTM------MAKALANE-------AKVPLLLVKATELIGEHVGDGARRIHELYERAR-----KAAPCI 213 (368)
T ss_pred ceeEEECCCCccHHH------HHHHHhcc-------cCCceEEechHHHHHHHhhhHHHHHHHHHHHHH-----hcCCeE
Confidence 899999999999996 22222221 22346666666665443 33333 334443321 123357
Q ss_pred EEEcccchhc
Q 042373 237 LVLDEADRMF 246 (494)
Q Consensus 237 lVlDEaD~ml 246 (494)
+.+||.|.+.
T Consensus 214 vFiDE~DAia 223 (368)
T COG1223 214 VFIDELDAIA 223 (368)
T ss_pred EEehhhhhhh
Confidence 8899999875
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.60 E-value=0.6 Score=50.68 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=14.7
Q ss_pred CEEEEcCCCCCchhhhHH
Q 042373 160 DSVAITETGSGKTLAFLL 177 (494)
Q Consensus 160 dvi~~a~TGSGKTlafll 177 (494)
-+|++||.|+|||.+..+
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999975543
|
|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=90.53 E-value=1.3 Score=46.52 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=17.9
Q ss_pred HHHHcCCCEEEEcCCCCCchh
Q 042373 153 ALIISGLDSVAITETGSGKTL 173 (494)
Q Consensus 153 p~il~grdvi~~a~TGSGKTl 173 (494)
-.+-.+.++++.+|||+|||.
T Consensus 114 r~l~~~~PVLL~GppGtGKTt 134 (383)
T PHA02244 114 KIVNANIPVFLKGGAGSGKNH 134 (383)
T ss_pred HHHhcCCCEEEECCCCCCHHH
Confidence 345578999999999999995
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=90.52 E-value=0.52 Score=47.24 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHc-C-CCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 146 AIQAPASALIIS-G-LDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 146 piQ~~aip~il~-g-rdvi~~a~TGSGKTlafllpil~~l 183 (494)
+-|.+.|-.++. . .-+++.++||||||.. +-.++..+
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 334444444432 3 4588999999999963 34455555
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=90.49 E-value=1.7 Score=43.75 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=17.0
Q ss_pred HHHHHc-C--CCEEEEcCCCCCchh
Q 042373 152 SALIIS-G--LDSVAITETGSGKTL 173 (494)
Q Consensus 152 ip~il~-g--rdvi~~a~TGSGKTl 173 (494)
++.+.. + +++++.++||||||.
T Consensus 102 l~~l~~~~~~~~~~i~g~~g~GKtt 126 (270)
T TIGR02858 102 LPYLVRNNRVLNTLIISPPQCGKTT 126 (270)
T ss_pred HHHHHhCCCeeEEEEEcCCCCCHHH
Confidence 445543 3 688999999999996
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.46 E-value=2.2 Score=47.92 Aligned_cols=45 Identities=18% Similarity=0.360 Sum_probs=26.1
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhc--CCCcEEEecCCCChHHH
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIR--PDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~--~~~Q~ilfSAT~~~~v~ 279 (494)
....++|||||+|.|... ....+++.+. +..-+++|.+|-+..+.
T Consensus 117 ~g~~kVIIIDEad~Lt~~----a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTRE----AFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCceEEEEEChHhCCHH----HHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 345689999999998632 3444555542 23334455555544443
|
|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.37 E-value=1.2 Score=47.12 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=15.3
Q ss_pred CCEEEEcCCCCCchhhh
Q 042373 159 LDSVAITETGSGKTLAF 175 (494)
Q Consensus 159 rdvi~~a~TGSGKTlaf 175 (494)
||+++.+|+|+|||+..
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 79999999999999754
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=1.2 Score=48.64 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=38.4
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh-hhhHHHHHHHhcCcceecccceEE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV-RRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~-TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.+.+++.||+|||||+.. -.+..-. +...+.+.+.+-...-++ +..++..++... .-..=.+
T Consensus 259 pkGILL~GPpGTGKTllA--kaiA~e~----------~~~~~~l~~~~l~~~~vGese~~l~~~f~~A-----~~~~P~I 321 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTA--KAIANDW----------QLPLLRLDVGKLFGGIVGESESRMRQMIRIA-----EALSPCI 321 (489)
T ss_pred CceEEEECCCCCcHHHHH--HHHHHHh----------CCCEEEEEhHHhcccccChHHHHHHHHHHHH-----HhcCCcE
Confidence 367999999999999643 2222211 222333333321111122 333444444321 1112357
Q ss_pred EEEcccchhcc
Q 042373 237 LVLDEADRMFD 247 (494)
Q Consensus 237 lVlDEaD~ml~ 247 (494)
|++||+|.++.
T Consensus 322 L~IDEID~~~~ 332 (489)
T CHL00195 322 LWIDEIDKAFS 332 (489)
T ss_pred EEehhhhhhhc
Confidence 88999998874
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=2.1 Score=45.84 Aligned_cols=52 Identities=8% Similarity=0.083 Sum_probs=28.4
Q ss_pred cceEEEEEcccchhc-ccCChhHHHHHHHhhc---CCCcEEEecCCCCh-HHHHHHH
Q 042373 232 TRVTYLVLDEADRMF-DMGFEPQITRIVQNIR---PDRQAVLFSPTFPP-RVEILAR 283 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml-~~gf~~~i~~Il~~l~---~~~Q~ilfSAT~~~-~v~~l~~ 283 (494)
...++||+|=+-++. +......+..++..+. +..-++.+|||... .+...++
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 466889999876653 2222233444444432 22346778888876 4444443
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=1.4 Score=49.46 Aligned_cols=42 Identities=10% Similarity=0.169 Sum_probs=26.9
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC---CCEEEEcCCCCCchhhhHH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG---LDSVAITETGSGKTLAFLL 177 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g---rdvi~~a~TGSGKTlafll 177 (494)
.+|+++--++.+++.|++ .+.++ +-+|++|+.|+|||....+
T Consensus 13 ~~f~dviGQe~vv~~L~~---------------~l~~~rl~ha~Lf~Gp~GvGKTtlAr~ 57 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTN---------------ALTQQRLHHAYLFTGTRGVGKTTVSRI 57 (618)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 456665446666666654 22233 2359999999999976554
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.24 E-value=0.33 Score=52.73 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=32.8
Q ss_pred CCCCCCCcccCC---CCHHHHHHHHhCCCCC---CChhHHHHHHHHHcCCCEEEEcCCCCCchhhh
Q 042373 116 APKPIKTWRQTG---LTTKILETFSKLNHEN---PVAIQAPASALIISGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 116 ~P~pi~~f~~l~---L~~~ll~~l~~~g~~~---ptpiQ~~aip~il~grdvi~~a~TGSGKTlaf 175 (494)
+-.|=-+|+++| |..+.-..+++.--.. |.-+.+--|+ .=|-+++.+|+|+||||..
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~---HVKGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIK---HVKGILLYGPPGTGKTLIA 273 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCcc---ceeeEEEECCCCCChhHHH
Confidence 335566788885 7777666555421111 1112111111 1267899999999999843
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=90.23 E-value=2.1 Score=41.57 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCCchhhhHH
Q 042373 158 GLDSVAITETGSGKTLAFLL 177 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafll 177 (494)
|.-+++.+++|+|||.....
T Consensus 25 g~~~~i~G~~GsGKt~l~~~ 44 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQ 44 (234)
T ss_pred CcEEEEECCCCCChHHHHHH
Confidence 46788889999999964433
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=90.10 E-value=1 Score=45.61 Aligned_cols=20 Identities=30% Similarity=0.312 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCCCchhhhH
Q 042373 157 SGLDSVAITETGSGKTLAFL 176 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafl 176 (494)
.++-+++++|||+|||....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35678899999999997544
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=90.05 E-value=0.51 Score=53.57 Aligned_cols=62 Identities=16% Similarity=0.032 Sum_probs=45.2
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.+++-|.+++.. ....+++.|..|||||.+..--+...+.... -.....|+|+-|+..|..+
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~em 63 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREM 63 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeeeEechHHHHHHH
Confidence 478999998865 3567899999999999876555554443211 1123699999999998876
|
|
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=89.98 E-value=0.76 Score=44.40 Aligned_cols=27 Identities=26% Similarity=0.177 Sum_probs=19.6
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
|.-+++.+++|||||.-.+--+...+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~ 45 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLK 45 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhh
Confidence 467899999999999754444445544
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=89.95 E-value=1.5 Score=46.53 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=53.5
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC------------CCCCCeEEEEccchh--HHHhhhhhhHHHHHHHh
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVP------------GDDSPVGLVMAPTGE--LVRQQVRRGRMIDLLCK 223 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~------------~~~~p~aLIl~PTre--La~Qi~TPgrl~dll~~ 223 (494)
.+-+|+++|.|+|||..... +...++....... ..+.|-..++.|... -..|+ ..+.+.+..
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~-lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~i---R~l~~~~~~ 111 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARA-FAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEV---RELVTIAAR 111 (394)
T ss_pred CeEEEEECCCCCcHHHHHHH-HHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHH---HHHHHHHHh
Confidence 35689999999999964433 3333332211000 112556667766421 11121 122333322
Q ss_pred cCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCCh
Q 042373 224 NGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPP 276 (494)
Q Consensus 224 ~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~ 276 (494)
.. ...+.+++|+||+|+|.... ...+.++++.-++.. ++++.+|-+.
T Consensus 112 ~p----~~~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~ 158 (394)
T PRK07940 112 RP----STGRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPE 158 (394)
T ss_pred Cc----ccCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChH
Confidence 11 23567899999999997432 233333444333333 3444444333
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=89.90 E-value=1.9 Score=45.02 Aligned_cols=124 Identities=15% Similarity=0.120 Sum_probs=65.5
Q ss_pred ChhHHHHHHHHHc--C---CCEEEEcCCCCCchhhhHHHHHHHHHcCCCC---CC-----------CCCCCeEEEEccch
Q 042373 145 VAIQAPASALIIS--G---LDSVAITETGSGKTLAFLLPMLRHIWEQPPV---VP-----------GDDSPVGLVMAPTG 205 (494)
Q Consensus 145 tpiQ~~aip~il~--g---rdvi~~a~TGSGKTlafllpil~~l~~~~~~---~~-----------~~~~p~aLIl~PTr 205 (494)
.|+|...|..+.+ | +-++++||.|.||+... .-+.+.++-..+. .+ ..+.|-..++.|..
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA-~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~ 81 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA-QHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEA 81 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH-HHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc
Confidence 6888888887764 3 36789999999999644 3344445433211 00 12357777887763
Q ss_pred h------------------HHH------hhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhh
Q 042373 206 E------------------LVR------QQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI 261 (494)
Q Consensus 206 e------------------La~------Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l 261 (494)
- ... ....-..+.++...-.. .......+++|||+||+|.... ...+-+.++.-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~-~~~~~~~kV~iI~~ae~m~~~A-aNaLLKtLEEP 159 (342)
T PRK06964 82 LAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGV-GTHRGGARVVVLYPAEALNVAA-ANALLKTLEEP 159 (342)
T ss_pred ccccccccccccccchhhcccccccccccccCHHHHHHHHHHhcc-CCccCCceEEEEechhhcCHHH-HHHHHHHhcCC
Confidence 1 000 01111223333322111 1124567899999999997432 23333444433
Q ss_pred cCCCcEEEec
Q 042373 262 RPDRQAVLFS 271 (494)
Q Consensus 262 ~~~~Q~ilfS 271 (494)
++..-+|+.|
T Consensus 160 p~~t~fiL~t 169 (342)
T PRK06964 160 PPGTVFLLVS 169 (342)
T ss_pred CcCcEEEEEE
Confidence 3333444443
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.23 Score=55.16 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 143 NPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..+|+|...+-.+-.- +.|+++.++-+|||... +-++-...++. ...+|++.||.++|...
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~-~n~~g~~i~~~-------P~~~l~v~Pt~~~a~~~ 78 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELL-LNWIGYSIDQD-------PGPMLYVQPTDDAAKDF 78 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHH-HhhceEEEEeC-------CCCEEEEEEcHHHHHHH
Confidence 5678888877666644 68899999999999843 33444444432 23489999999999987
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=89.87 E-value=1.2 Score=49.64 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=17.4
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
+-+|++||.|+|||..... +...+.
T Consensus 39 hA~Lf~GP~GvGKTTlA~~-lAk~L~ 63 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI-FAKAIN 63 (605)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHhc
Confidence 4588999999999965443 334443
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=89.84 E-value=0.42 Score=55.66 Aligned_cols=56 Identities=25% Similarity=0.291 Sum_probs=39.1
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHH
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVR 209 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~ 209 (494)
.|+++|...--.+..| -|+-..||-||||+..||++-..+. |.-+=|++-.--||.
T Consensus 138 ~~ydVQLiGgivLh~G--~IAEM~TGEGKTLvatlp~yLnAL~---------G~gVHvVTvNDYLA~ 193 (1025)
T PRK12900 138 VPYDVQLIGGIVLHSG--KISEMATGEGKTLVSTLPTFLNALT---------GRGVHVVTVNDYLAQ 193 (1025)
T ss_pred cccchHHhhhHHhhcC--CccccCCCCCcchHhHHHHHHHHHc---------CCCcEEEeechHhhh
Confidence 4677776655455555 4788999999999999999877665 333555555555654
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=89.79 E-value=7.4 Score=45.12 Aligned_cols=90 Identities=18% Similarity=0.193 Sum_probs=49.4
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--------hhhhHHHHHHHhcCcce
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--------VRRGRMIDLLCKNGVKI 228 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--------~TPgrl~dll~~~~~~~ 228 (494)
.|.-+++++|+|+|||...- .+...+.. ...-+-+...+....-. ..||++...+.....
T Consensus 348 ~g~~i~l~GppG~GKTtl~~--~ia~~l~~--------~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~-- 415 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQ--SIAKATGR--------KYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGV-- 415 (784)
T ss_pred CCceEEEECCCCCCHHHHHH--HHHHHhCC--------CEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCC--
Confidence 45678999999999996332 23332221 11112233333322111 468888887765321
Q ss_pred ecccceEEEEEcccchhcccCChhHHHHHHHhhc
Q 042373 229 TNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIR 262 (494)
Q Consensus 229 ~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~ 262 (494)
.. .++++||+|++....-.+-...++..+.
T Consensus 416 --~~--~villDEidk~~~~~~g~~~~aLlevld 445 (784)
T PRK10787 416 --KN--PLFLLDEIDKMSSDMRGDPASALLEVLD 445 (784)
T ss_pred --CC--CEEEEEChhhcccccCCCHHHHHHHHhc
Confidence 12 3699999999875432333444555443
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.66 E-value=1.9 Score=45.04 Aligned_cols=111 Identities=22% Similarity=0.277 Sum_probs=60.4
Q ss_pred CCCCCcccCC-CCHHHHHHHH--hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 118 KPIKTWRQTG-LTTKILETFS--KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 118 ~pi~~f~~l~-L~~~ll~~l~--~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
+|=.+|++.| |..+|.+.-. .+-..+|--++.--|. --+-||+.+|+|+|||+.. ..+-++
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~---PPKGVLLYGPPGTGKTLLA-----kAVA~~-------- 208 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGID---PPKGVLLYGPPGTGKTLLA-----KAVANQ-------- 208 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCC---CCCceEeeCCCCCcHHHHH-----HHHHhc--------
Confidence 3556677775 6666554321 1222332222221111 1378999999999999732 222221
Q ss_pred CCeEEEEccchhHHHhh-hhhhHHHHHHHhcCcceecccceEEEEEcccchhccc
Q 042373 195 SPVGLVMAPTGELVRQQ-VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDM 248 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi-~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~ 248 (494)
.--..|=+.--||++.. +.-.||+.-+-. ...-+.-+.+.+||.|.+-..
T Consensus 209 T~AtFIrvvgSElVqKYiGEGaRlVRelF~----lArekaPsIIFiDEIDAIg~k 259 (406)
T COG1222 209 TDATFIRVVGSELVQKYIGEGARLVRELFE----LAREKAPSIIFIDEIDAIGAK 259 (406)
T ss_pred cCceEEEeccHHHHHHHhccchHHHHHHHH----HHhhcCCeEEEEechhhhhcc
Confidence 22356667778888765 333455433321 111234468999999988753
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=89.54 E-value=2.3 Score=43.53 Aligned_cols=20 Identities=40% Similarity=0.375 Sum_probs=17.2
Q ss_pred HHHcCCCEEEEcCCCCCchh
Q 042373 154 LIISGLDSVAITETGSGKTL 173 (494)
Q Consensus 154 ~il~grdvi~~a~TGSGKTl 173 (494)
.+..|++++++++||||||.
T Consensus 140 ~v~~~~~ili~G~tGsGKTT 159 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTT 159 (308)
T ss_pred HhhCCCEEEEECCCCCCHHH
Confidence 34467899999999999996
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=89.33 E-value=1.9 Score=50.33 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=57.0
Q ss_pred HHHHHHHHH----cC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----hhhhHH
Q 042373 148 QAPASALII----SG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----VRRGRM 217 (494)
Q Consensus 148 Q~~aip~il----~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----~TPgrl 217 (494)
|..-|-.++ ++ .++|++++.|+|||... --+.+.+.... ....-.++..+.+-... |.... -...+|
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~-~~La~~i~~~~-v~~~l~~~~i~~l~l~~-l~ag~~~~ge~e~~l 268 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV-EGLALRIAAGD-VPPALRNVRLLSLDLGL-LQAGASVKGEFENRL 268 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH-HHHHHHHhhCC-CCccccCCeEEEeehhh-hhcccccchHHHHHH
Confidence 555454443 32 59999999999999643 22333332211 00001123333222222 21100 112345
Q ss_pred HHHHHhcCcceecccceEEEEEcccchhcccCC---hhHHHHHHHhhcCCCcEEEecCCCChHH
Q 042373 218 IDLLCKNGVKITNLTRVTYLVLDEADRMFDMGF---EPQITRIVQNIRPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 218 ~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf---~~~i~~Il~~l~~~~Q~ilfSAT~~~~v 278 (494)
..++..-.. -..-.+|++||+|.|...|- ..+...++...-..-.+.+..||-+++.
T Consensus 269 k~ii~e~~~----~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 269 KSVIDEVKA----SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEY 328 (852)
T ss_pred HHHHHHHHh----cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHH
Confidence 555543110 01234789999999986431 1122223332222334555566655444
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=89.26 E-value=3.9 Score=42.22 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=66.2
Q ss_pred CCChhHHHHHHHHH----cCC---CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC------------CCCCCeEEEEcc
Q 042373 143 NPVAIQAPASALII----SGL---DSVAITETGSGKTLAFLLPMLRHIWEQPPVVP------------GDDSPVGLVMAP 203 (494)
Q Consensus 143 ~ptpiQ~~aip~il----~gr---dvi~~a~TGSGKTlafllpil~~l~~~~~~~~------------~~~~p~aLIl~P 203 (494)
.+.|+|...+..+. +|| -.+++||.|.||+... .-+.+.++-...... ....|-..++.|
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA-~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLV-ELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKP 81 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec
Confidence 45788888877765 444 6899999999998533 334444443221110 123677888888
Q ss_pred chh----HHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 204 TGE----LVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 204 Tre----La~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
..+ -+.|+ ..+.+.+... ......+++|+|+||+|.... ...+-++++.-+++.-+|+.|
T Consensus 82 ~~~~~~I~vdqi---R~l~~~~~~~----~~~~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t 145 (319)
T PRK06090 82 EKEGKSITVEQI---RQCNRLAQES----SQLNGYRLFVIEPADAMNESA-SNALLKTLEEPAPNCLFLLVT 145 (319)
T ss_pred CcCCCcCCHHHH---HHHHHHHhhC----cccCCceEEEecchhhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 531 12222 1233333322 134567899999999997432 233333344323333344433
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=89.18 E-value=2 Score=42.22 Aligned_cols=115 Identities=18% Similarity=0.209 Sum_probs=56.2
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcC-CCC----CCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccce
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQ-PPV----VPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~-~~~----~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l 234 (494)
++++.|++|+|||.... .+...+... ... .....+-. .++....+|...+ ...+. +..++
T Consensus 19 nIlItG~pGvGKT~LA~-aLa~~l~~~l~~l~~~~~~~d~~~~-~~fid~~~Ll~~L------~~a~~-------~~~~~ 83 (226)
T PHA00729 19 SAVIFGKQGSGKTTYAL-KVARDVFWKLNNLSTKDDAWQYVQN-SYFFELPDALEKI------QDAID-------NDYRI 83 (226)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHHhhcccccchhhHHhcCCc-EEEEEHHHHHHHH------HHHHh-------cCCCC
Confidence 79999999999995333 233333210 000 00011222 3334444555432 12221 12345
Q ss_pred EEEEEcccchhcccC-Ch----hHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCcc
Q 042373 235 TYLVLDEADRMFDMG-FE----PQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCN 289 (494)
Q Consensus 235 ~~lVlDEaD~ml~~g-f~----~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ 289 (494)
.++|+|++-.-+... |. .....+...++...+++.|...-+..+....+..|-..
T Consensus 84 dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~~~ 143 (226)
T PHA00729 84 PLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGWYQ 143 (226)
T ss_pred CEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCCcH
Confidence 789999953322111 11 12223444455556677777766667666665544433
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=89.17 E-value=1.8 Score=42.29 Aligned_cols=39 Identities=8% Similarity=-0.007 Sum_probs=24.7
Q ss_pred HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc
Q 042373 156 ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP 203 (494)
Q Consensus 156 l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P 203 (494)
-.|.-+++.+++|+|||...+- ++..+..+ +..+++++.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~-~~~~~~~~--------g~~~~yi~~ 60 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQR-LAYGFLQN--------GYSVSYVST 60 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHH-HHHHHHhC--------CCcEEEEeC
Confidence 3477889999999999975332 23333221 445677763
|
|
| >KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=89.17 E-value=1 Score=46.17 Aligned_cols=93 Identities=18% Similarity=0.260 Sum_probs=48.9
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--------hhh-hHHHHHHHhcCcceec
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--------VRR-GRMIDLLCKNGVKITN 230 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--------~TP-grl~dll~~~~~~~~~ 230 (494)
++++.+|.|+|||-. +++.-..++ +| -|++.+..+. ..+ .+...+-.......+.
T Consensus 64 h~L~YgPPGtGktst-i~a~a~~ly----------~~-----~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fs 127 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTST-ILANARDFY----------SP-----HPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYS 127 (360)
T ss_pred cccccCCCCCCCCCc-hhhhhhhhc----------CC-----CCchhHHHHhhccCccCCcchHHHHHHHHhhccceecc
Confidence 788888999999954 334443333 22 3455554444 111 1122222211110100
Q ss_pred -ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEE
Q 042373 231 -LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269 (494)
Q Consensus 231 -l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~il 269 (494)
-..++++|+||||.|... -...+++++.....+..+.+
T Consensus 128 t~~~fKlvILDEADaMT~~-AQnALRRviek~t~n~rF~i 166 (360)
T KOG0990|consen 128 THAAFKLVILDEADAMTRD-AQNALRRVIEKYTANTRFAT 166 (360)
T ss_pred ccCceeEEEecchhHhhHH-HHHHHHHHHHHhccceEEEE
Confidence 126899999999998843 23455566666554444443
|
|
| >COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.14 E-value=0.86 Score=47.09 Aligned_cols=45 Identities=16% Similarity=-0.020 Sum_probs=36.2
Q ss_pred CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 141 HENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
+.--|+-|..=+..|...-=+++++|-|+|||..........+..
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~ 170 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGA 170 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhh
Confidence 556789999988888877778899999999998776666666644
|
|
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.14 E-value=1.7 Score=47.46 Aligned_cols=116 Identities=15% Similarity=0.215 Sum_probs=61.1
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
|-|++++|+|+|||+ |.+.... +.+.- .+-+.--|.=+=. .-..|+.+++..... +--+.
T Consensus 338 KGVLLvGPPGTGKTl------LARAvAG------EA~VP-FF~~sGSEFdEm~VGvGArRVRdLF~aAk~-----~APcI 399 (752)
T KOG0734|consen 338 KGVLLVGPPGTGKTL------LARAVAG------EAGVP-FFYASGSEFDEMFVGVGARRVRDLFAAAKA-----RAPCI 399 (752)
T ss_pred CceEEeCCCCCchhH------HHHHhhc------ccCCC-eEeccccchhhhhhcccHHHHHHHHHHHHh-----cCCeE
Confidence 689999999999996 2222221 11111 1111111110000 233477788775422 33467
Q ss_pred EEEcccchhcccCCh-------hHHHHHHHhh---cCCCcEEEecCCC-ChHHHHHHHhcCCcccee
Q 042373 237 LVLDEADRMFDMGFE-------PQITRIVQNI---RPDRQAVLFSPTF-PPRVEILARKTNVCNLSI 292 (494)
Q Consensus 237 lVlDEaD~ml~~gf~-------~~i~~Il~~l---~~~~Q~ilfSAT~-~~~v~~l~~~~g~~~ILV 292 (494)
+.+||.|.+-..-.. ..+..++-.+ ..+--+|++.||- |..+....-+.|.++.-|
T Consensus 400 IFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v 466 (752)
T KOG0734|consen 400 IFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHV 466 (752)
T ss_pred EEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeE
Confidence 889999987643211 1233333333 4455688889994 444444444455555444
|
|
| >PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP | Back alignment and domain information |
|---|
Probab=89.14 E-value=2.2 Score=44.87 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=30.8
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhh-cCCCcEEEecCCCChHH
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNI-RPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l-~~~~Q~ilfSAT~~~~v 278 (494)
.....+|+|||+| +-|.+-.-.+.++++.+ ..+.-+|..|.+.|..+
T Consensus 125 ~~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 125 AKESRLLCFDEFQ-VTDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred HhcCCEEEEeeee-ccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 3456789999998 34444344455666554 45667788888877654
|
AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding |
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=89.11 E-value=1.9 Score=40.32 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=17.6
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
+.+++.+|.|+|||... .-+...+..
T Consensus 15 ~~~L~~G~~G~gkt~~a-~~~~~~l~~ 40 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLA-LALAKALLC 40 (188)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHHcC
Confidence 35889999999999543 334445543
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=89.09 E-value=5.4 Score=46.67 Aligned_cols=57 Identities=19% Similarity=0.076 Sum_probs=42.8
Q ss_pred CCccceeeccccccCCCCCC---c-----eEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccC
Q 042373 286 NVCNLSIANSVRARGLDEKE---L-----ELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEEN 342 (494)
Q Consensus 286 g~~~ILVaTdv~~rGlDi~~---v-----~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~ 342 (494)
..-.|.|||+.|+||-||.- | =|||.-..|.|..---|-.|| -|..|.+..|++-+|
T Consensus 615 ~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 615 KLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred CCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 34679999999999999841 2 268888889887777775555 455788888888654
|
|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=89.02 E-value=0.73 Score=52.11 Aligned_cols=61 Identities=16% Similarity=0.019 Sum_probs=44.3
Q ss_pred CChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 144 PVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 144 ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+++-|.+++-. ...++++.|..|||||.+-+--+...+.... ......|+|+.|+..|.++
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-----~~p~~IL~vTFt~~Aa~em 62 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG-----YKARNIAAVTFTNKAAREM 62 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHH
Confidence 68889998754 4568999999999999876655555443211 1134689999998888876
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.01 E-value=0.78 Score=49.76 Aligned_cols=39 Identities=21% Similarity=0.165 Sum_probs=24.5
Q ss_pred ChhHHHHHHHHH--cCCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 145 VAIQAPASALII--SGLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 145 tpiQ~~aip~il--~grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.+-|.+.+..++ .+--+++++|||||||... ..++.++.
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 344444444443 3345889999999999743 45666653
|
|
| >KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=88.88 E-value=2 Score=43.45 Aligned_cols=114 Identities=14% Similarity=0.225 Sum_probs=57.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchh-HHHhh--------hhhh------H--HHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE-LVRQQ--------VRRG------R--MIDLL 221 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTre-La~Qi--------~TPg------r--l~dll 221 (494)
-+++++||.|+||-. -++.++++++-..-..- + --.-=|.+|+.- |-.+. .||. | +.+++
T Consensus 35 PHll~yGPSGaGKKT-rimclL~elYG~gvekl-k-i~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQell 111 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKT-RIMCLLRELYGVGVEKL-K-IETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELL 111 (351)
T ss_pred CeEEEECCCCCCchh-hHHHHHHHHhCCCchhe-e-eeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHH
Confidence 468999999999863 46678888874210000 0 001122333322 11111 2331 1 12222
Q ss_pred H----hcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCCh
Q 042373 222 C----KNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPP 276 (494)
Q Consensus 222 ~----~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~ 276 (494)
. ........-+.+++||+-|||.|.... ...+++-++.....+++|+.....++
T Consensus 112 KevAQt~qie~~~qr~fKvvvi~ead~LT~dA-Q~aLRRTMEkYs~~~RlIl~cns~Sr 169 (351)
T KOG2035|consen 112 KEVAQTQQIETQGQRPFKVVVINEADELTRDA-QHALRRTMEKYSSNCRLILVCNSTSR 169 (351)
T ss_pred HHHHhhcchhhccccceEEEEEechHhhhHHH-HHHHHHHHHHHhcCceEEEEecCccc
Confidence 2 111112223578999999999987432 33444555555555566665554443
|
|
| >cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion | Back alignment and domain information |
|---|
Probab=88.86 E-value=0.2 Score=52.66 Aligned_cols=41 Identities=27% Similarity=0.406 Sum_probs=32.5
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+++++|+||||||.++++|-+... ...+||+-|--|+....
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----------~~s~vv~D~Kge~~~~t 41 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----------PGSVVVLDPKGENFELT 41 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----------CCCEEEEccchhHHHHH
Confidence 478999999999999999987532 23578888888888653
|
These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence. |
| >PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues | Back alignment and domain information |
|---|
Probab=88.85 E-value=0.29 Score=52.79 Aligned_cols=41 Identities=37% Similarity=0.549 Sum_probs=31.5
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
.+++++|+||||||..|++|.+-.. ...+||.-|--||...
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~-----------~~s~iV~D~KgEl~~~ 85 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY-----------PGSMIVTDPKGELYEK 85 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc-----------cCCEEEEECCCcHHHH
Confidence 5799999999999999999987432 1246677777777654
|
These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane |
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.80 E-value=1.7 Score=48.05 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=23.6
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
..+.+++|+||+|+|....+ ..+.+.++..+....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35678999999998875432 23333444434445555543
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.76 E-value=2.1 Score=47.83 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=17.4
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
+.+|++||.|+|||....+ +...+.
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~-lA~~l~ 63 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARI-LAKAVN 63 (585)
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHhc
Confidence 4469999999999975543 334443
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=88.74 E-value=1.7 Score=44.70 Aligned_cols=82 Identities=12% Similarity=0.038 Sum_probs=41.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCC--C-----------CCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcC
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVV--P-----------GDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNG 225 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~--~-----------~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~ 225 (494)
+.++++||.|+|||.. ..-+...+....... + ....+..+.+-+...- .+.....+.+.+...
T Consensus 37 ~~~Ll~G~~G~GKt~~-a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~- 112 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSI-ARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNN--GVDDIREILDNVKYA- 112 (355)
T ss_pred eEEEEECCCCCCHHHH-HHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccccC--CHHHHHHHHHHHhcC-
Confidence 4578999999999953 334445554321100 0 0012344555443110 000112233333221
Q ss_pred cceecccceEEEEEcccchhcc
Q 042373 226 VKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 226 ~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
-.+..-++||+||+|.|..
T Consensus 113 ---p~~~~~~vviidea~~l~~ 131 (355)
T TIGR02397 113 ---PSSGKYKVYIIDEVHMLSK 131 (355)
T ss_pred ---cccCCceEEEEeChhhcCH
Confidence 1245567999999998864
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.62 E-value=2.1 Score=47.47 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=57.1
Q ss_pred CCCCCcccCCCCHHHHHHHHhCCCCCC--ChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKLNHENP--VAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDS 195 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~g~~~p--tpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~ 195 (494)
-|=.+|++.|--..+...|... +..| .|-+-+++..- .-.-+++++|+|+||||.. ..+ .+. .
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~a-I~~PiK~pd~~k~lGi~-~PsGvLL~GPPGCGKTLlA-----KAV-ANE-------a 569 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMA-ILAPIKRPDLFKALGID-APSGVLLCGPPGCGKTLLA-----KAV-ANE-------A 569 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHH-HhhhccCHHHHHHhCCC-CCCceEEeCCCCccHHHHH-----HHH-hhh-------c
Confidence 3457899998666666655431 1111 12222222111 1356999999999999732 222 111 1
Q ss_pred CeEEEEccchhHHHhh-hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 196 PVGLVMAPTGELVRQQ-VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi-~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
..-.|-+--=||..-. +.-.|-+.-+-... .-+.-+.+.|||+|.|.-
T Consensus 570 g~NFisVKGPELlNkYVGESErAVR~vFqRA----R~saPCVIFFDEiDaL~p 618 (802)
T KOG0733|consen 570 GANFISVKGPELLNKYVGESERAVRQVFQRA----RASAPCVIFFDEIDALVP 618 (802)
T ss_pred cCceEeecCHHHHHHHhhhHHHHHHHHHHHh----hcCCCeEEEecchhhcCc
Confidence 1123334444565543 33333333222211 123456889999999884
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.41 E-value=0.45 Score=48.77 Aligned_cols=82 Identities=23% Similarity=0.216 Sum_probs=43.1
Q ss_pred HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh--hhhHHHHHHHhcCcceeccc
Q 042373 155 IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV--RRGRMIDLLCKNGVKITNLT 232 (494)
Q Consensus 155 il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~--TPgrl~dll~~~~~~~~~l~ 232 (494)
=++..|+++++|||||||+. .-.|.++++- |.++-=+-|-.=|-=++ --..+..+|...... +..-
T Consensus 94 EL~KSNILLiGPTGsGKTlL--AqTLAk~LnV---------PFaiADATtLTEAGYVGEDVENillkLlqaadyd-V~rA 161 (408)
T COG1219 94 ELSKSNILLIGPTGSGKTLL--AQTLAKILNV---------PFAIADATTLTEAGYVGEDVENILLKLLQAADYD-VERA 161 (408)
T ss_pred eeeeccEEEECCCCCcHHHH--HHHHHHHhCC---------CeeeccccchhhccccchhHHHHHHHHHHHcccC-HHHH
Confidence 35567999999999999974 3456666553 33332222111110000 011244455443221 1112
Q ss_pred ceEEEEEcccchhccc
Q 042373 233 RVTYLVLDEADRMFDM 248 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~ 248 (494)
.-..+.+||.|.+...
T Consensus 162 erGIIyIDEIDKIark 177 (408)
T COG1219 162 ERGIIYIDEIDKIARK 177 (408)
T ss_pred hCCeEEEechhhhhcc
Confidence 3357889999998754
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=88.36 E-value=3.2 Score=44.73 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=34.8
Q ss_pred ceEEEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 233 RVTYLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
..++||+|.+-++.. ......+..+...+.++.-++.++|+........++.
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 348999999976542 2233455666666667777888899887665555544
|
|
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Probab=88.34 E-value=1 Score=48.14 Aligned_cols=19 Identities=42% Similarity=0.431 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
...++++.+|||+|||...
T Consensus 107 ~~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CCceEEEEcCCCCCHHHHH
Confidence 4578999999999999744
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.33 E-value=2.1 Score=47.88 Aligned_cols=47 Identities=23% Similarity=0.329 Sum_probs=26.5
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHH
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~ 279 (494)
..+.+++|+||+|+|....| ..+.++++..+...-+|+. .|-+..+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~~~~fIL~-tte~~kll 162 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGF-NALLKIVEEPPEHLIFIFA-TTEPEKVL 162 (584)
T ss_pred cCCceEEEEECCCcCCHHHH-HHHHHHHhcCCCCeEEEEE-eCChHhhH
Confidence 45778999999999875432 2333444443333444443 35554443
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.31 E-value=3.7 Score=46.25 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=29.3
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHc---CCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIIS---GLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~---grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.+|.++--++.+...|... +.. ...+|++||.|+|||..... +...++
T Consensus 13 ~~f~~liGq~~i~~~L~~~---------------l~~~rl~~a~Lf~Gp~G~GKttlA~~-lAk~L~ 63 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNA---------------LISNRIAPAYLFTGPRGTGKTSSARI-LAKSLN 63 (620)
T ss_pred CcHhhccChHHHHHHHHHH---------------HHcCCCCceEEEECCCCCChHHHHHH-HHHHhc
Confidence 5566665566666655432 111 24679999999999975443 333443
|
|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=88.14 E-value=1.1 Score=46.85 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=50.2
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
.+|+.+|.|+|||... +++....... .-+-+-++-|..-.. .+.+++........-.++=++|.+
T Consensus 164 SmIlWGppG~GKTtlA------rlia~tsk~~---SyrfvelSAt~a~t~------dvR~ife~aq~~~~l~krkTilFi 228 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLA------RLIASTSKKH---SYRFVELSATNAKTN------DVRDIFEQAQNEKSLTKRKTILFI 228 (554)
T ss_pred ceEEecCCCCchHHHH------HHHHhhcCCC---ceEEEEEeccccchH------HHHHHHHHHHHHHhhhcceeEEEe
Confidence 7899999999999632 2222111111 123344444444333 344555543222233456678999
Q ss_pred cccchhcccC---ChhHHHHHHHhhcCCCcEEEecCCC
Q 042373 240 DEADRMFDMG---FEPQITRIVQNIRPDRQAVLFSPTF 274 (494)
Q Consensus 240 DEaD~ml~~g---f~~~i~~Il~~l~~~~Q~ilfSAT~ 274 (494)
||+||....+ |.+.|+ +--+++..||-
T Consensus 229 DEiHRFNksQQD~fLP~VE--------~G~I~lIGATT 258 (554)
T KOG2028|consen 229 DEIHRFNKSQQDTFLPHVE--------NGDITLIGATT 258 (554)
T ss_pred HHhhhhhhhhhhcccceec--------cCceEEEeccc
Confidence 9999976432 444433 33456667763
|
|
| >KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.13 E-value=1.2 Score=45.33 Aligned_cols=50 Identities=12% Similarity=0.188 Sum_probs=34.3
Q ss_pred eEEEEEcccchhcccCChhHHHHHHHhhc-------CCCcEEEecCCCChHHHHHHHh
Q 042373 234 VTYLVLDEADRMFDMGFEPQITRIVQNIR-------PDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 234 l~~lVlDEaD~ml~~gf~~~i~~Il~~l~-------~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
=+++|+||+|.|- .|..+.+.-.++..+ ++.-.|++|.+-..++-.++..
T Consensus 179 rslFIFDE~DKmp-~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~ 235 (344)
T KOG2170|consen 179 RSLFIFDEVDKLP-PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALE 235 (344)
T ss_pred CceEEechhhhcC-HhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHH
Confidence 3689999999986 455555555555432 2345788999888877766554
|
|
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=87.98 E-value=0.74 Score=45.90 Aligned_cols=30 Identities=27% Similarity=0.291 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHhcCcceecccceEEEEEcccch
Q 042373 212 VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADR 244 (494)
Q Consensus 212 ~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ 244 (494)
+||+||..++..+ .+.++++.+||||--|+
T Consensus 183 GTP~Rl~kLle~~---~L~l~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 183 GTPGRLSKLLENG---ALSLSNLKRIVLDWSYL 212 (252)
T ss_pred eChHHHHHHHHcC---CCCcccCeEEEEcCCcc
Confidence 8999999999775 45789999999997543
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=87.98 E-value=1.6 Score=49.74 Aligned_cols=63 Identities=16% Similarity=0.041 Sum_probs=44.6
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..+++-|+.|+- ....++++.|..|||||.+.+--+...+.... ..+..+|+|+.||..|..+
T Consensus 195 ~~L~~~Q~~av~--~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~-----~~~~~IL~ltft~~AA~em 257 (684)
T PRK11054 195 SPLNPSQARAVV--NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQ-----AQPEQILLLAFGRQAAEEM 257 (684)
T ss_pred CCCCHHHHHHHh--CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC-----CCHHHeEEEeccHHHHHHH
Confidence 468999999874 33467899999999999865544333332211 1134799999999999876
|
|
| >PF12846 AAA_10: AAA-like domain | Back alignment and domain information |
|---|
Probab=87.84 E-value=0.79 Score=45.41 Aligned_cols=42 Identities=24% Similarity=0.468 Sum_probs=29.5
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVR 209 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~ 209 (494)
++++++|+||||||.... .++..+... +..++|+=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~--------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRR--------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHc--------CCCEEEEcCCchHHH
Confidence 679999999999997666 555555443 566777766655543
|
|
| >TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family | Back alignment and domain information |
|---|
Probab=87.68 E-value=0.76 Score=48.49 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=34.9
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
-.++.+..|||||.+..+-++..++... .+..+|++-||..-..+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~------~~~~~~~~r~~~~sl~~ 47 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK------KQQNILAARKVQNSIRD 47 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC------CCcEEEEEehhhhHHHH
Confidence 3578899999999999998888887751 15678989898774443
|
This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354. |
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=87.67 E-value=0.77 Score=48.33 Aligned_cols=76 Identities=20% Similarity=0.300 Sum_probs=43.7
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-hhhhHHHHHHHhcCccee-cccceEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-VRRGRMIDLLCKNGVKIT-NLTRVTY 236 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-~TPgrl~dll~~~~~~~~-~l~~l~~ 236 (494)
+-+++++|.|+|||+..-. +...+ +...+++ .--+|.... +.|++++..+-....... .-..-++
T Consensus 149 lgllL~GPPGcGKTllAra-iA~el-----------g~~~i~v-sa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcV 215 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCEL-VFKKM-----------GIEPIVM-SAGELESENAGEPGKLIRQRYREAADIIKKKGKMSC 215 (413)
T ss_pred eEEEeeCCCCCCHHHHHHH-HHHHc-----------CCCeEEE-EHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeE
Confidence 4678899999999974322 22221 3333333 334555443 677777655543211100 1235679
Q ss_pred EEEcccchhcc
Q 042373 237 LVLDEADRMFD 247 (494)
Q Consensus 237 lVlDEaD~ml~ 247 (494)
|++||+|.++.
T Consensus 216 LFIDEIDA~~g 226 (413)
T PLN00020 216 LFINDLDAGAG 226 (413)
T ss_pred EEEehhhhcCC
Confidence 99999998774
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=87.63 E-value=19 Score=35.77 Aligned_cols=46 Identities=15% Similarity=0.055 Sum_probs=38.5
Q ss_pred CCCcceEEEEecccCHHHHHHHHHHHHhccCcch-HHHHHHHHHHHH
Q 042373 328 SWLKSCAFRFISEENAIYATDLVKAFELSELVVR-DDLKAVADSFIA 373 (494)
Q Consensus 328 aGr~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp-~~l~~~~~~~~~ 373 (494)
+-|-|..++|..++...|+.-+...++..+-+++ +.|...|-.|..
T Consensus 182 sDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 182 SDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWAL 228 (249)
T ss_pred HHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4556899999999999999988888988888887 688888877764
|
|
| >PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2 | Back alignment and domain information |
|---|
Probab=87.58 E-value=6.2 Score=37.10 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=37.2
Q ss_pred ccceEEEEEcccchhcccCCh--hHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 231 LTRVTYLVLDEADRMFDMGFE--PQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~--~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
-..+++|||||+-..++.|+. +.+..+++.-+...-+|+.--..|+++...+..
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADl 149 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADL 149 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SE
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCe
Confidence 357899999999999988874 567777887777778888888889888887743
|
5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=87.54 E-value=5.5 Score=40.09 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=33.4
Q ss_pred ccceEEEEEcccchhcc-cCChhHHHHHHHhhc------CCCcEEEecCCCChHHHHHH
Q 042373 231 LTRVTYLVLDEADRMFD-MGFEPQITRIVQNIR------PDRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~------~~~Q~ilfSAT~~~~v~~l~ 282 (494)
..+.++|++|=+-++.. ......+..+.+.++ ++--++.++||........+
T Consensus 152 ~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~ 210 (272)
T TIGR00064 152 ARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA 210 (272)
T ss_pred HCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH
Confidence 35678999999987652 223445666666555 55667888998765543333
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=87.52 E-value=0.79 Score=42.75 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=18.2
Q ss_pred cceEEEEEcccchhccc--CChhHHHHHHH
Q 042373 232 TRVTYLVLDEADRMFDM--GFEPQITRIVQ 259 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~--gf~~~i~~Il~ 259 (494)
...+++|+||+-.|=-. +|.+.+..++.
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 57789999999887543 47777777666
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
Probab=87.49 E-value=0.72 Score=51.30 Aligned_cols=46 Identities=24% Similarity=0.151 Sum_probs=30.1
Q ss_pred HHHhCCCCCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 135 TFSKLNHENPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 135 ~l~~~g~~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.|.++|| .+-|.+.|-.++.. --+++++|||||||... ..++..+.
T Consensus 294 ~l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 294 DIDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred CHHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 3556665 45566666655543 35789999999999653 45666653
|
This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. |
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=87.47 E-value=1.9 Score=46.57 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=26.1
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
|.-+++.+++|+|||... +-+...+..+ +.++||++- .+-..|+
T Consensus 80 Gs~~lI~G~pG~GKTtL~-lq~a~~~a~~--------g~~vlYvs~-Ees~~qi 123 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLL-LQVAARLAAA--------GGKVLYVSG-EESASQI 123 (446)
T ss_pred CEEEEEECCCCCCHHHHH-HHHHHHHHhc--------CCeEEEEEc-cccHHHH
Confidence 466788999999999643 3333333221 446777763 3333443
|
|
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
Probab=87.42 E-value=1 Score=54.67 Aligned_cols=60 Identities=23% Similarity=0.190 Sum_probs=47.8
Q ss_pred CChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 144 PVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 144 ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.|+-|.++|- ..|+++++.|.-|||||.+.+--++..+.... .--..|+|+=|+..|..+
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~------~~~~il~~tFt~~aa~e~ 61 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGV------DIDRLLVVTFTNAAAREM 61 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCC------CHhhEEEEeccHHHHHHH
Confidence 5899999997 46899999999999999987777777665321 123589999999998765
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. |
| >PHA03311 helicase-primase subunit BBLF4; Provisional | Back alignment and domain information |
|---|
Probab=87.39 E-value=1.7 Score=49.19 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=27.1
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+-+++.+.-|+|||. .|+.+.+ ...++|..||+--|+.+
T Consensus 72 s~~~itG~AGsGKst-----~i~~l~~---------~l~cvitg~T~vAAqN~ 110 (828)
T PHA03311 72 SVYLITGTAGAGKST-----SIQTLNE---------NLDCVITGATRVAAQNL 110 (828)
T ss_pred EEEEEecCCCCChHH-----HHHHHHH---------hcCEEEEcchHHHHHhh
Confidence 346778889999986 3444443 23578888888777665
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=87.35 E-value=1.1 Score=50.89 Aligned_cols=58 Identities=26% Similarity=0.342 Sum_probs=44.6
Q ss_pred CCChhHHHHHHHHHcC-----CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh
Q 042373 143 NPVAIQAPASALIISG-----LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV 212 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g-----rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~ 212 (494)
.|++.|..++..+..+ +..++.+.+|||||+... .++... +..+|||+|+.++|.|++
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~-----------~r~vLIVt~~~~~A~~l~ 74 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARL-----------QRPTLVLAHNKTLAAQLY 74 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHh-----------CCCEEEEECCHHHHHHHH
Confidence 7999999999998644 257799999999997643 233222 346999999999999864
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=87.25 E-value=0.96 Score=51.72 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=45.4
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..+++-|.+++-. ....+++.|..|||||.+..-=+.. +...... .....|+|+-|+..|..+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~-Li~~~~v----~p~~IL~lTFTnkAA~em 65 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAW-LLSVENA----SPHSIMAVTFTNKAAAEM 65 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHH-HHHcCCC----CHHHeEeeeccHHHHHHH
Confidence 4689999998854 3568999999999999875544443 3332111 134689999999998876
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=87.20 E-value=0.83 Score=51.01 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=35.4
Q ss_pred CCChhHHHHHHHHH----cCCCEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 143 NPVAIQAPASALII----SGLDSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 143 ~ptpiQ~~aip~il----~grdvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
+|+.||.+.+..+. .|+=-|+-+|||+|||++.+-..+.++..
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 78999988776544 68877888999999999998888887754
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=87.13 E-value=2.1 Score=50.36 Aligned_cols=57 Identities=16% Similarity=0.088 Sum_probs=42.6
Q ss_pred CCccceeeccccccCCCCC--------CceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccC
Q 042373 286 NVCNLSIANSVRARGLDEK--------ELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEEN 342 (494)
Q Consensus 286 g~~~ILVaTdv~~rGlDi~--------~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~ 342 (494)
..-.|-|||+.|+||-||. +==+||.-..+.|..---|-.||+|| .|.+-.|++=+|
T Consensus 675 ~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 675 QPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred CCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 4556899999999999986 22368888888887777775566555 677888887554
|
|
| >TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily | Back alignment and domain information |
|---|
Probab=86.98 E-value=2.8 Score=44.72 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=26.7
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHH-cCCCCCCCCCCCeEEEEc---cchhHHHh
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIW-EQPPVVPGDDSPVGLVMA---PTGELVRQ 210 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~-~~~~~~~~~~~p~aLIl~---PTreLa~Q 210 (494)
|.=+++.|++|+|||. |.+-+..++. .+ +-.+++++ |..+|+..
T Consensus 194 g~liviag~pg~GKT~-~al~ia~~~a~~~--------g~~v~~fSlEm~~~~l~~R 241 (421)
T TIGR03600 194 GDLIVIGARPSMGKTT-LALNIAENVALRE--------GKPVLFFSLEMSAEQLGER 241 (421)
T ss_pred CceEEEEeCCCCCHHH-HHHHHHHHHHHhC--------CCcEEEEECCCCHHHHHHH
Confidence 4456677999999994 5665655543 22 33466665 44444443
|
Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. |
| >KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.94 E-value=2.3 Score=45.54 Aligned_cols=107 Identities=17% Similarity=0.254 Sum_probs=54.1
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-hhhhHHHHHHHhcCcceecccceEEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-VRRGRMIDLLCKNGVKITNLTRVTYL 237 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-~TPgrl~dll~~~~~~~~~l~~l~~l 237 (494)
+.++..+|.|+|||+. .+.+-... + -+++=.---.|+.-. +--..++..|-. ......-.++
T Consensus 187 rglLLfGPpgtGKtmL-----~~aiAsE~-------~-atff~iSassLtsK~~Ge~eK~vralf~----vAr~~qPsvi 249 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTML-----AKAIATES-------G-ATFFNISASSLTSKYVGESEKLVRALFK----VARSLQPSVI 249 (428)
T ss_pred chhheecCCCCchHHH-----HHHHHhhh-------c-ceEeeccHHHhhhhccChHHHHHHHHHH----HHHhcCCeEE
Confidence 6788999999999962 22222111 1 122222222333332 222344444432 1234456788
Q ss_pred EEcccchhcccC--------ChhHHHHHHH----hhcCCCcEEEecCCC-ChHHHHHH
Q 042373 238 VLDEADRMFDMG--------FEPQITRIVQ----NIRPDRQAVLFSPTF-PPRVEILA 282 (494)
Q Consensus 238 VlDEaD~ml~~g--------f~~~i~~Il~----~l~~~~Q~ilfSAT~-~~~v~~l~ 282 (494)
++||+|.++..- -+-..+.++. ...++-++++++||- |.++...+
T Consensus 250 fidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~ 307 (428)
T KOG0740|consen 250 FIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAA 307 (428)
T ss_pred EechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHH
Confidence 899999998532 1112222222 223455777888884 44444333
|
|
| >COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.90 E-value=10 Score=36.21 Aligned_cols=53 Identities=15% Similarity=0.294 Sum_probs=41.7
Q ss_pred cceEEEEEcccchhcccCCh--hHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 232 TRVTYLVLDEADRMFDMGFE--PQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~--~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
.++++|||||.-..+..|+. +.|..++..-|...-+|+..-..|+.+.+++..
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 36899999999999988864 467777776666667777777789998888765
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=86.89 E-value=1.6 Score=41.01 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=29.6
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcC-CCcEEEecC
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRP-DRQAVLFSP 272 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~-~~Q~ilfSA 272 (494)
.+-+++++||.+.-+|......+..++..+.. +.++++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 45688999999999988777777666666533 366666554
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >PRK13897 type IV secretion system component VirD4; Provisional | Back alignment and domain information |
|---|
Probab=86.83 E-value=0.46 Score=53.15 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=33.1
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
++++++||||||||..|++|-+-.+ +..+||+=|--|+...
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-----------~~S~VV~DpKGEl~~~ 199 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-----------EDSVVVHDIKLENYEL 199 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-----------CCCEEEEeCcHHHHHH
Confidence 5799999999999999999998664 2346777777777754
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=86.79 E-value=6.5 Score=36.08 Aligned_cols=49 Identities=14% Similarity=0.265 Sum_probs=24.8
Q ss_pred ceEEEEEcccchhc-ccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHH
Q 042373 233 RVTYLVLDEADRMF-DMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 233 ~l~~lVlDEaD~ml-~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l 281 (494)
..+++|+|....+. +......+..+.....+..-++.+++.........
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~ 131 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQ 131 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHH
Confidence 45678888877643 11223333333333334555566666554444333
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.75 E-value=3.8 Score=45.75 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=25.9
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHH
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v 278 (494)
..+.+++|+||+|+|.... ...+.++++.-+...-+| |.+|-+..+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fI-l~t~~~~kl 162 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFI-FATTEPHKV 162 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEE-EEeCChhhh
Confidence 4577899999999887433 233444444433333444 444544433
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.75 E-value=2.8 Score=40.67 Aligned_cols=53 Identities=25% Similarity=0.416 Sum_probs=44.0
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
.+-+.+||||.-.=+|.-....+..++.+++..-.+++||.-.-++++.++..
T Consensus 150 h~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 150 HDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred cCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe
Confidence 46679999999777776677888888999988888999999888888888743
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.58 E-value=3.1 Score=46.13 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=23.2
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
..+-+++||||+|+|-...+ ..+.+.++..+....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a~-naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSF-NALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHHH-HHHHHHHhcCCCCceEEEEE
Confidence 34668999999999875432 33444444433344444433
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=86.51 E-value=1.6 Score=48.56 Aligned_cols=42 Identities=21% Similarity=0.186 Sum_probs=27.2
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHc---CCCEEEEcCCCCCchhhhHH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIIS---GLDSVAITETGSGKTLAFLL 177 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~---grdvi~~a~TGSGKTlafll 177 (494)
.+|+++--++.+.+.|+.. +.. ++-.|++||.|+|||.+.-+
T Consensus 13 ~~f~~viGq~~v~~~L~~~---------------i~~~~~~hayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNA---------------IKQGKISHAYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred CcHHhccCcHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 4566665566666665432 111 24578899999999975544
|
|
| >COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.47 E-value=1 Score=46.35 Aligned_cols=58 Identities=22% Similarity=0.195 Sum_probs=37.0
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHH-HHHHHcCCCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPA-SALIISGLDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~a-ip~il~grdvi~~a~TGSGKTlafllpil~~l 183 (494)
|..|..-.++.. .|.+ +..+++.|..- |-++-.+++++++++||||||. ++.+++..+
T Consensus 109 IRk~~~~~~t~~---~l~~--~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~I 167 (312)
T COG0630 109 IRKFSDEPITPE---DLIE--YGTISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFI 167 (312)
T ss_pred EEcCCCCCCCHH---HHhh--cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhC
Confidence 334444444443 3333 44567777554 5556678999999999999995 455555554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=86.39 E-value=3.2 Score=48.28 Aligned_cols=42 Identities=17% Similarity=0.295 Sum_probs=34.1
Q ss_pred eEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCC
Q 042373 234 VTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFP 275 (494)
Q Consensus 234 l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~ 275 (494)
=-+||||++|.+-+......+..++.+.++...+|+.|-+.|
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 358999999998666566788889999988888888887754
|
|
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=86.39 E-value=1.6 Score=47.49 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCchhhh
Q 042373 149 APASALIISGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 149 ~~aip~il~grdvi~~a~TGSGKTlaf 175 (494)
..++-++++|.++++.+|+|+|||...
T Consensus 30 ~lll~aalag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 30 RLCLLAALSGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHccCCCEEEECCCChhHHHHH
Confidence 344556779999999999999999743
|
|
| >COG4185 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.38 E-value=0.71 Score=42.93 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=28.7
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.|+.+++|||||..|..-.... .+ .++++.+-++|.|+
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~------------~~-~~~~VN~D~iA~~i 42 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPL------------LP-GIVFVNADEIAAQI 42 (187)
T ss_pred EEEecCCCCCceeeeeccchhh------------cC-CeEEECHHHHhhhc
Confidence 4677999999998876543322 22 68889999999998
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=86.22 E-value=4.5 Score=43.57 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=34.0
Q ss_pred cceEEEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 232 TRVTYLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
...++||+|=+-++-. ......+..+...+.+..-++.++|+........++.
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~ 235 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKA 235 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHH
Confidence 4578999999987642 2223445555555656555777888877666555554
|
|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=86.20 E-value=1.2 Score=50.96 Aligned_cols=63 Identities=14% Similarity=0.078 Sum_probs=45.4
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..++|-|.+++-. ....+++.|..|||||.+..-=+...+ ..... ..-..|+|+-|+..|..+
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li-~~~~v----~p~~IL~lTFT~kAA~Em 70 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLM-QVENA----SPYSIMAVTFTNKAAAEM 70 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHH-HcCCC----ChhHeEeeeccHHHHHHH
Confidence 3589999998864 346899999999999987655444333 22111 133689999999999887
|
|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=86.09 E-value=0.68 Score=46.07 Aligned_cols=45 Identities=24% Similarity=0.188 Sum_probs=28.3
Q ss_pred HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHH
Q 042373 155 IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELV 208 (494)
Q Consensus 155 il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa 208 (494)
+..+.+++++|+||||||.. +-.++..+-.. .-+++++-.+.|+-
T Consensus 124 v~~~~~ili~G~tGSGKTT~-l~all~~i~~~--------~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTL-LNALLEEIPPE--------DERIVTIEDPPELR 168 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHH-HHHHHHHCHTT--------TSEEEEEESSS-S-
T ss_pred cccceEEEEECCCccccchH-HHHHhhhcccc--------ccceEEecccccee
Confidence 34578999999999999963 45555554332 23556665666653
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=86.07 E-value=1.2 Score=40.10 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=52.0
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCC---CCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccc
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGD---DSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTR 233 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~---~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~ 233 (494)
.|.-+.+.+++|+|||..+ -++..+. +...+. .+...+.++|. .+.|....+.-. ..-+.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl--~~l~G~~---~~~~G~i~~~~~~~i~~~~~-------lS~G~~~rv~la----ral~~~ 88 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLL--KLIAGEL---EPDEGIVTWGSTVKIGYFEQ-------LSGGEKMRLALA----KLLLEN 88 (144)
T ss_pred CCCEEEEECCCCCCHHHHH--HHHcCCC---CCCceEEEECCeEEEEEEcc-------CCHHHHHHHHHH----HHHhcC
Confidence 5677889999999999622 2232221 111110 01123334443 122221111111 012446
Q ss_pred eEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCC
Q 042373 234 VTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 234 l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
-+++++||.-.=+|......+..++..+. .+++++.-
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~~---~til~~th 125 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSH 125 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHcC---CEEEEEEC
Confidence 67999999988888777777777776652 34555443
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=85.97 E-value=4.7 Score=42.79 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=14.8
Q ss_pred CEEEEcCCCCCchhhhHH
Q 042373 160 DSVAITETGSGKTLAFLL 177 (494)
Q Consensus 160 dvi~~a~TGSGKTlafll 177 (494)
.+|+++|.|+|||.+..+
T Consensus 40 a~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999976544
|
|
| >PF14516 AAA_35: AAA-like domain | Back alignment and domain information |
|---|
Probab=85.95 E-value=7.4 Score=40.25 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=34.0
Q ss_pred CCCCChhHHHHHHHHHc-CCCEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 141 HENPVAIQAPASALIIS-GLDSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il~-grdvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
|-.-.|+.+.++..+.. |+-+.+.||-.+|||. .+.-+++++..
T Consensus 13 Yi~R~~~e~~~~~~i~~~G~~~~I~apRq~GKTS-ll~~l~~~l~~ 57 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQPGSYIRIKAPRQMGKTS-LLLRLLERLQQ 57 (331)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEECcccCCHHH-HHHHHHHHHHH
Confidence 33444699999999998 9999999999999995 34555666543
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.91 E-value=5.3 Score=40.90 Aligned_cols=196 Identities=15% Similarity=0.208 Sum_probs=103.5
Q ss_pred CCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC-----CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG-----LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPG 192 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g-----rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~ 192 (494)
+|-..|++..=-+.-.++|++.= .-|| =+|.++.| +-+++.+|+|+||+ |+.-.+.. .
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAV---ILPI---KFPqlFtGkR~PwrgiLLyGPPGTGKS--YLAKAVAT---E------ 189 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAV---ILPI---KFPQLFTGKRKPWRGILLYGPPGTGKS--YLAKAVAT---E------ 189 (439)
T ss_pred CCCCchhhhccchhHHHHHHhhe---eecc---cchhhhcCCCCcceeEEEeCCCCCcHH--HHHHHHHh---h------
Confidence 45566877533334455555421 1111 14788888 46899999999997 44333322 1
Q ss_pred CCCCeEEEEccchhHHHhh-hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCC---hhHHHHHHHh----h---
Q 042373 193 DDSPVGLVMAPTGELVRQQ-VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGF---EPQITRIVQN----I--- 261 (494)
Q Consensus 193 ~~~p~aLIl~PTreLa~Qi-~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf---~~~i~~Il~~----l--- 261 (494)
.....+-+.+-.|+... +...+|+.-|-.- ..-+.-+++.+||+|.|....- .+..++|-.. +
T Consensus 190 --AnSTFFSvSSSDLvSKWmGESEkLVknLFem----ARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGV 263 (439)
T KOG0739|consen 190 --ANSTFFSVSSSDLVSKWMGESEKLVKNLFEM----ARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGV 263 (439)
T ss_pred --cCCceEEeehHHHHHHHhccHHHHHHHHHHH----HHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcc
Confidence 12567778888888776 4445554433211 1123446789999998876432 2233333221 1
Q ss_pred c-CCCcEEEecCCCChHHHHHH-HhcCCccceeec-cccccCCCCCCceEEEec-CCCCC-HhHHHhhhcc--CCCcceE
Q 042373 262 R-PDRQAVLFSPTFPPRVEILA-RKTNVCNLSIAN-SVRARGLDEKELELVINF-DAPND-YEDYVHHCCQ--SWLKSCA 334 (494)
Q Consensus 262 ~-~~~Q~ilfSAT~~~~v~~l~-~~~g~~~ILVaT-dv~~rGlDi~~v~~VIny-d~P~s-~~~yvhR~GR--aGr~G~a 334 (494)
. .+--++.+.||-.+.+..-+ ++.-.-+|.|-- +..+|- .-+=||. +.|.+ .+.-.+-.|| -|-.|.-
T Consensus 264 G~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~-----~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsD 338 (439)
T KOG0739|consen 264 GNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARA-----RMFKLHLGDTPHVLTEQDFKELARKTEGYSGSD 338 (439)
T ss_pred ccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhh-----hhheeccCCCccccchhhHHHHHhhcCCCCcCc
Confidence 2 23457788999777665443 433333343322 122221 1111222 22332 2233456666 5667777
Q ss_pred EEEeccc
Q 042373 335 FRFISEE 341 (494)
Q Consensus 335 itfv~~~ 341 (494)
|+++..+
T Consensus 339 isivVrD 345 (439)
T KOG0739|consen 339 ISIVVRD 345 (439)
T ss_pred eEEEehh
Confidence 7777654
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=85.79 E-value=1.1 Score=42.17 Aligned_cols=31 Identities=29% Similarity=0.205 Sum_probs=23.9
Q ss_pred CChhHHHHHHHHH-cCCCEEEEcCCCCCchhh
Q 042373 144 PVAIQAPASALII-SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 144 ptpiQ~~aip~il-~grdvi~~a~TGSGKTla 174 (494)
.++-|...+...+ .|..++++++||||||..
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 4566666666554 578999999999999974
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=85.70 E-value=3.6 Score=40.23 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=25.0
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~ 202 (494)
|.-+++.+++|||||...+--+...+.. |-.+++++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~---------ge~~lyvs 56 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM---------GEPGIYVA 56 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc---------CCcEEEEE
Confidence 5788999999999997544434444422 55677776
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase | Back alignment and domain information |
|---|
Probab=85.68 E-value=1.7 Score=45.34 Aligned_cols=64 Identities=22% Similarity=0.143 Sum_probs=38.8
Q ss_pred HHHHHhCCCCCCChhHHHHHHHHH-cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHH
Q 042373 133 LETFSKLNHENPVAIQAPASALII-SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELV 208 (494)
Q Consensus 133 l~~l~~~g~~~ptpiQ~~aip~il-~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa 208 (494)
+..|.+.|+ .++.+...+..+. .+++++++++||||||.. +-.++..+-. ..+.+++--+.||.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i~~---------~~riv~iEd~~El~ 218 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALVAP---------DERIVLVEDAAELR 218 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccCCC---------CCcEEEECCcceec
Confidence 455556666 4556666665554 557999999999999963 2233332211 23456666666664
|
Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer. |
| >PRK13850 type IV secretion system protein VirD4; Provisional | Back alignment and domain information |
|---|
Probab=85.61 E-value=0.57 Score=53.05 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.2
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l 183 (494)
++++++||||||||..|++|-+-.+
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~ 164 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF 164 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC
Confidence 4899999999999999999987653
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=85.56 E-value=2.8 Score=45.73 Aligned_cols=20 Identities=30% Similarity=0.177 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCCCchhhhHH
Q 042373 158 GLDSVAITETGSGKTLAFLL 177 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafll 177 (494)
|+-+.+++|||+|||.....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred CcEEEEECCCCccHHHHHHH
Confidence 55678899999999986554
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.42 E-value=3.5 Score=48.79 Aligned_cols=105 Identities=25% Similarity=0.390 Sum_probs=57.3
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHH-Hhh---------------hhhh-------
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELV-RQQ---------------VRRG------- 215 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa-~Qi---------------~TPg------- 215 (494)
-|-|+.-.-|-|||.- .|.++.|+--... .=|| -||+|||--+. ..+ +++.
T Consensus 635 lNGILADEmGLGKTIQ-tISllAhLACeeg----nWGP-HLIVVpTsviLnWEMElKRwcPglKILTYyGs~kErkeKRq 708 (1958)
T KOG0391|consen 635 LNGILADEMGLGKTIQ-TISLLAHLACEEG----NWGP-HLIVVPTSVILNWEMELKRWCPGLKILTYYGSHKERKEKRQ 708 (1958)
T ss_pred ccceehhhhcccchhH-HHHHHHHHHhccc----CCCC-ceEEeechhhhhhhHHHhhhCCcceEeeecCCHHHHHHHhh
Confidence 3668888999999964 5667777754321 1155 48888885432 222 1111
Q ss_pred ------HHH------HHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCC
Q 042373 216 ------RMI------DLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 216 ------rl~------dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
.|. .++.. ....+.-.++.|+||||||.+-+| ..+-..-+-+++..++ +|++.|
T Consensus 709 gW~kPnaFHVCItSYklv~q-d~~AFkrkrWqyLvLDEaqnIKnf--ksqrWQAllnfnsqrR-LLLtgT 774 (1958)
T KOG0391|consen 709 GWAKPNAFHVCITSYKLVFQ-DLTAFKRKRWQYLVLDEAQNIKNF--KSQRWQALLNFNSQRR-LLLTGT 774 (1958)
T ss_pred cccCCCeeEEeehhhHHHHh-HHHHHHhhccceeehhhhhhhcch--hHHHHHHHhccchhhe-eeecCC
Confidence 100 00000 011122457899999999998654 4444444444544444 455555
|
|
| >PHA00350 putative assembly protein | Back alignment and domain information |
|---|
Probab=85.38 E-value=2.3 Score=45.18 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=17.3
Q ss_pred EEEEcCCCCCchhhhHH-HHHHHHH
Q 042373 161 SVAITETGSGKTLAFLL-PMLRHIW 184 (494)
Q Consensus 161 vi~~a~TGSGKTlafll-pil~~l~ 184 (494)
.++.+..|||||+..+. -++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk 28 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALK 28 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHH
Confidence 46789999999987765 3444443
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=85.38 E-value=4.5 Score=43.44 Aligned_cols=63 Identities=13% Similarity=0.216 Sum_probs=39.9
Q ss_pred cceEEEEEcccchhccc-CChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh---cCCccceeec
Q 042373 232 TRVTYLVLDEADRMFDM-GFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK---TNVCNLSIAN 294 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~-gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~---~g~~~ILVaT 294 (494)
...++|++|=+-++-.. .....+..+...+.++.-++.++||........++. .-.+.-+|-|
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlT 247 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIIT 247 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEE
Confidence 36789999999875421 233455555556666767888999987665555544 2234455555
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK13880 conjugal transfer coupling protein TraG; Provisional | Back alignment and domain information |
|---|
Probab=85.20 E-value=0.47 Score=53.51 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=32.1
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVR 209 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~ 209 (494)
++++++|+||||||..+++|.|... +..+||+=|-.|+..
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~-----------~~S~VV~D~KGE~~~ 215 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW-----------GHSSVITDLKGELWA 215 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC-----------CCCEEEEeCcHHHHH
Confidence 5799999999999999999998542 335777777777754
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=85.16 E-value=2.6 Score=47.66 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=14.2
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
+.+++++|+|+|||..
T Consensus 186 ~gill~G~~G~GKt~~ 201 (644)
T PRK10733 186 KGVLMVGPPGTGKTLL 201 (644)
T ss_pred CcEEEECCCCCCHHHH
Confidence 5699999999999974
|
|
| >PTZ00293 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=85.11 E-value=2.1 Score=41.55 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=39.3
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc---hh-HHHhhhhh----------hHHHHHHHh
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT---GE-LVRQQVRR----------GRMIDLLCK 223 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT---re-La~Qi~TP----------grl~dll~~ 223 (494)
|+=.++++|-+||||.-.+- .+.+.... +..++++-|. |. -...+.|. ..+.+++..
T Consensus 4 G~i~vi~GpMfSGKTteLLr-~i~~y~~a--------g~kv~~~kp~~DtR~~~~~~I~Sh~g~~~~a~~v~~~~e~~~~ 74 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMR-LVKRFTYS--------EKKCVVIKYSKDTRYSDEQNISSHDKQMLKAIKVSKLKEVLET 74 (211)
T ss_pred eEEEEEECCCCChHHHHHHH-HHHHHHHc--------CCceEEEEecccccCCCCCcEEecCCCcceeEEcCCHHHHHHh
Confidence 44457899999999964443 33333222 4456777663 32 11111110 112233221
Q ss_pred cCcceecccceEEEEEcccchh
Q 042373 224 NGVKITNLTRVTYLVLDEADRM 245 (494)
Q Consensus 224 ~~~~~~~l~~l~~lVlDEaD~m 245 (494)
+..+++|.+||++-+
T Consensus 75 -------~~~~dvI~IDEaQFf 89 (211)
T PTZ00293 75 -------AKNYDVIAIDEGQFF 89 (211)
T ss_pred -------ccCCCEEEEEchHhh
Confidence 356799999999864
|
|
| >PRK08506 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=85.00 E-value=4.4 Score=44.13 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=17.8
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.=+++.|+||.||| +|.+-+..++.
T Consensus 193 ~LivIaarpg~GKT-~fal~ia~~~~ 217 (472)
T PRK08506 193 DLIIIAARPSMGKT-TLCLNMALKAL 217 (472)
T ss_pred ceEEEEcCCCCChH-HHHHHHHHHHH
Confidence 34566699999999 46666666654
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=84.99 E-value=2.2 Score=47.11 Aligned_cols=40 Identities=10% Similarity=0.192 Sum_probs=24.9
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
+.+.+++|+||||+|.... ...+.++++..++...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4578899999999987433 233444455444555555544
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.84 E-value=1.9 Score=41.58 Aligned_cols=50 Identities=26% Similarity=0.442 Sum_probs=33.8
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC--CCeEEEEccchhHHHhh
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD--SPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~--~p~aLIl~PTreLa~Qi 211 (494)
.|+=.-+++|.|.||+. ++.++.++.... .+.- ...-+-=+|+.+||..+
T Consensus 26 ~g~iTs~IGPNGAGKST--LLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 26 KGGITSIIGPNGAGKST--LLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred CCceeEEECCCCccHHH--HHHHHHHhcccc---CceEEEeeeecccCChHHHHHHH
Confidence 46667789999999986 677888876432 1110 12334557999999876
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=84.83 E-value=1 Score=42.70 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=14.0
Q ss_pred CCCEEEEcCCCCCchh
Q 042373 158 GLDSVAITETGSGKTL 173 (494)
Q Consensus 158 grdvi~~a~TGSGKTl 173 (494)
++-+++.||.|+|||.
T Consensus 20 ~~~~~l~G~rg~GKTs 35 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTS 35 (234)
T ss_dssp SSEEEEEESTTSSHHH
T ss_pred CcEEEEEcCCcCCHHH
Confidence 3678888999999996
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain | Back alignment and domain information |
|---|
Probab=84.75 E-value=0.92 Score=48.36 Aligned_cols=51 Identities=22% Similarity=0.312 Sum_probs=35.8
Q ss_pred HHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 152 SALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 152 ip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+|.-...+++++.|+||||||.. +..++..+... +..++|+=|..++....
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~--------~~~~vi~D~kg~~~~~~ 86 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRAR--------GDRAIIYDPNGGFVSKF 86 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHhc--------CCCEEEEeCCcchhHhh
Confidence 44455568999999999999974 54556555443 44677777877776544
|
TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria. |
| >PRK05595 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=84.58 E-value=3.7 Score=44.26 Aligned_cols=50 Identities=16% Similarity=0.115 Sum_probs=28.3
Q ss_pred CChhHHHHHHHHHcC---CCE-EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc
Q 042373 144 PVAIQAPASALIISG---LDS-VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP 203 (494)
Q Consensus 144 ptpiQ~~aip~il~g---rdv-i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P 203 (494)
||.++ .+-.++.| .++ ++.|+||+||| +|.+-+..++.... |..+++++.
T Consensus 185 ~tg~~--~ld~~~~G~~~g~liviaarpg~GKT-~~al~ia~~~a~~~-------g~~vl~fSl 238 (444)
T PRK05595 185 ASGFR--ELDAKTSGFQKGDMILIAARPSMGKT-TFALNIAEYAALRE-------GKSVAIFSL 238 (444)
T ss_pred cCChH--HHHHhcCCCCCCcEEEEEecCCCChH-HHHHHHHHHHHHHc-------CCcEEEEec
Confidence 45443 33444443 345 55799999999 46666665543111 445667653
|
|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
Probab=84.50 E-value=1.9 Score=47.19 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=28.5
Q ss_pred HHHhCCCCCCChhHHHHHHHHHcC-CC-EEEEcCCCCCchhhhHHHHHHHH
Q 042373 135 TFSKLNHENPVAIQAPASALIISG-LD-SVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 135 ~l~~~g~~~ptpiQ~~aip~il~g-rd-vi~~a~TGSGKTlafllpil~~l 183 (494)
.|..+|| ++-|.+.+-.++.. +. +++++|||||||... -.++..+
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 3455665 55566666665544 33 678999999999643 3345554
|
This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. |
| >PRK08760 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=84.48 E-value=4.1 Score=44.43 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=17.0
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~ 184 (494)
=+++.|++|+||| +|.+-+..++.
T Consensus 231 LivIaarPg~GKT-afal~iA~~~a 254 (476)
T PRK08760 231 LIILAARPAMGKT-TFALNIAEYAA 254 (476)
T ss_pred eEEEEeCCCCChh-HHHHHHHHHHH
Confidence 3455699999999 46666666553
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=84.30 E-value=3 Score=47.91 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=37.1
Q ss_pred eEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCC
Q 042373 234 VTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFP 275 (494)
Q Consensus 234 l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~ 275 (494)
--|||+|..|++-+.-....++.++++.|++.+.++.|-+-|
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 459999999999988888899999999999999998887755
|
|
| >PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein | Back alignment and domain information |
|---|
Probab=84.29 E-value=0.83 Score=48.32 Aligned_cols=54 Identities=26% Similarity=0.364 Sum_probs=37.2
Q ss_pred HHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhH
Q 042373 154 LIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGR 216 (494)
Q Consensus 154 ~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgr 216 (494)
.-...++++++|.||||||. ++.+++..+..+ +-+++|.=|.-++......|++
T Consensus 11 ~~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~--------g~~~iI~D~kg~~~~~f~~~~~ 64 (386)
T PF10412_consen 11 KDSENRHILIIGATGSGKTQ-AIRHLLDQIRAR--------GDRAIIYDPKGEFTERFYRPGK 64 (386)
T ss_dssp GGGGGG-EEEEE-TTSSHHH-HHHHHHHHHHHT--------T-EEEEEEETTHHHHHH--TT-
T ss_pred cchhhCcEEEECCCCCCHHH-HHHHHHHHHHHc--------CCEEEEEECCchHHHHhcCCCC
Confidence 33456899999999999996 566788887665 4578888888888776666654
|
It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A. |
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=84.28 E-value=5.7 Score=40.85 Aligned_cols=107 Identities=16% Similarity=0.205 Sum_probs=58.7
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCC-------CCCCCCCeEEEEccchhHHH-------------------hh-
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPV-------VPGDDSPVGLVMAPTGELVR-------------------QQ- 211 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~-------~~~~~~p~aLIl~PTreLa~-------------------Qi- 211 (494)
.-.+++||.|+||+.. ...+...++....- -...+.|-.+++.|+...-. +|
T Consensus 27 ha~Lf~G~~G~Gk~~~-A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~ 105 (314)
T PRK07399 27 PAYLFAGPEGVGRKLA-ALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIR 105 (314)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCc
Confidence 4789999999999953 34455555433210 01234688899998631100 11
Q ss_pred -hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 212 -VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 212 -~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
-....+...+.... .....+++|+|+||.|.... ...+.++++.-+ +..+|+.+.
T Consensus 106 id~ir~i~~~l~~~p----~~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 106 LEQIREIKRFLSRPP----LEAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred HHHHHHHHHHHccCc----ccCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEEC
Confidence 01112333343321 23577899999999987432 334444555444 554554443
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=84.20 E-value=1.2 Score=52.16 Aligned_cols=56 Identities=21% Similarity=0.203 Sum_probs=38.4
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHH
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVR 209 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~ 209 (494)
.|+++|...--.+. +--|+-..||=||||+..+|+.-..+. |.-+-|++..--||.
T Consensus 169 ~~yDVQliGgivLh--~G~IAEM~TGEGKTLvAtlp~yLnAL~---------GkgVHvVTVNDYLA~ 224 (1112)
T PRK12901 169 VHYDVQLIGGVVLH--QGKIAEMATGEGKTLVATLPVYLNALT---------GNGVHVVTVNDYLAK 224 (1112)
T ss_pred cccchHHhhhhhhc--CCceeeecCCCCchhHHHHHHHHHHHc---------CCCcEEEEechhhhh
Confidence 45666655443444 445889999999999999999877765 334555555655654
|
|
| >COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.11 E-value=4.4 Score=40.44 Aligned_cols=29 Identities=34% Similarity=0.331 Sum_probs=20.5
Q ss_pred HHHHcCC-CEEEEcCCCCCchhhhHHHHHHH
Q 042373 153 ALIISGL-DSVAITETGSGKTLAFLLPMLRH 182 (494)
Q Consensus 153 p~il~gr-dvi~~a~TGSGKTlafllpil~~ 182 (494)
+.+-.|+ =+.++++-|||||...- .++..
T Consensus 45 ~~i~d~qg~~~vtGevGsGKTv~~R-al~~s 74 (269)
T COG3267 45 AAIADGQGILAVTGEVGSGKTVLRR-ALLAS 74 (269)
T ss_pred HHHhcCCceEEEEecCCCchhHHHH-HHHHh
Confidence 4455566 67788999999998666 34433
|
|
| >PRK07004 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=84.06 E-value=4.4 Score=43.99 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=18.0
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
|.=+++.|.+|+|||. |.+-+..++.
T Consensus 213 g~liviaarpg~GKT~-~al~ia~~~a 238 (460)
T PRK07004 213 GELIIVAGRPSMGKTA-FSMNIGEYVA 238 (460)
T ss_pred CceEEEEeCCCCCccH-HHHHHHHHHH
Confidence 3445667999999994 6666665543
|
|
| >COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.05 E-value=10 Score=37.05 Aligned_cols=139 Identities=11% Similarity=0.151 Sum_probs=83.9
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc---cchhHHHhh------------------------
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA---PTGELVRQQ------------------------ 211 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~---PTreLa~Qi------------------------ 211 (494)
.=+++-++.|+|||+.-..-+.-.+.. +-.+.+++ ++|+...|.
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L~~---------g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~ 99 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFLMN---------GYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLE 99 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHhC---------CceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccc
Confidence 346788999999997444333333322 44555554 779999887
Q ss_pred ------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhc---CCCcEEEecCC---CChHHH
Q 042373 212 ------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIR---PDRQAVLFSPT---FPPRVE 279 (494)
Q Consensus 212 ------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~---~~~Q~ilfSAT---~~~~v~ 279 (494)
-....+++.+.. .....+-+++|+|=...+.-..-+..+..++..++ ..-.+|++++- ++.++.
T Consensus 100 ~~~~~~~~~~~~L~~l~~----~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~~l~e~~~ 175 (235)
T COG2874 100 PVNWGRRSARKLLDLLLE----FIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPSALDEDVL 175 (235)
T ss_pred ccccChHHHHHHHHHHHh----hHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeChhhcCHHHH
Confidence 011223333332 12245667899999887775554556666666554 34567887764 444433
Q ss_pred HHHHhcCCccceeeccccccCCCCCCceEEEec
Q 042373 280 ILARKTNVCNLSIANSVRARGLDEKELELVINF 312 (494)
Q Consensus 280 ~l~~~~g~~~ILVaTdv~~rGlDi~~v~~VIny 312 (494)
-. -...+.+++-.....-|=|...+--|+-|
T Consensus 176 ~r--irs~~d~~l~L~~~~~Gg~~~~~~~i~K~ 206 (235)
T COG2874 176 TR--IRSACDVYLRLRLEELGGDLIKVLEIVKY 206 (235)
T ss_pred HH--HHHhhheeEEEEhhhhCCeeeEEEEEeee
Confidence 32 35667777777777777776665555555
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=84.01 E-value=10 Score=42.79 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=14.9
Q ss_pred CEEEEcCCCCCchhhhHH
Q 042373 160 DSVAITETGSGKTLAFLL 177 (494)
Q Consensus 160 dvi~~a~TGSGKTlafll 177 (494)
-+|++||.|+|||.+..+
T Consensus 40 a~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARV 57 (620)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999976543
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=83.94 E-value=3.9 Score=43.15 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=23.2
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP 203 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P 203 (494)
|.=+++.+++|+|||...+ -+...+... +..++|++-
T Consensus 82 GslvLI~G~pG~GKStLll-q~a~~~a~~--------g~~VlYvs~ 118 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLL-QVAARLAKR--------GGKVLYVSG 118 (372)
T ss_pred CeEEEEEeCCCCCHHHHHH-HHHHHHHhc--------CCeEEEEEC
Confidence 4667888999999996433 333333221 346777754
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.90 E-value=6.3 Score=42.93 Aligned_cols=115 Identities=17% Similarity=0.098 Sum_probs=59.5
Q ss_pred cCCCCCCCCCcccCCCCHHHHHHHHh---CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCC
Q 042373 113 EKCAPKPIKTWRQTGLTTKILETFSK---LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPV 189 (494)
Q Consensus 113 g~~~P~pi~~f~~l~L~~~ll~~l~~---~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~ 189 (494)
+.....|..+|.+.+=-..+...++. ..+..|.-.+. --+-..+-+|+.+|.|+|||+..-.... ..
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~---~~~~~~~giLl~GpPGtGKT~lAkava~-----~~-- 300 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRK---LGLRPPKGVLLYGPPGTGKTLLAKAVAL-----ES-- 300 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHh---cCCCCCCeeEEECCCCCCHHHHHHHHHh-----hC--
Confidence 44455677888887633333333322 11222221111 0111224789999999999975443322 10
Q ss_pred CCCCCCCeEEEEccchhHHHhh-hhhhH-HHHHHHhcCcceecccceEEEEEcccchhccc
Q 042373 190 VPGDDSPVGLVMAPTGELVRQQ-VRRGR-MIDLLCKNGVKITNLTRVTYLVLDEADRMFDM 248 (494)
Q Consensus 190 ~~~~~~p~aLIl~PTreLa~Qi-~TPgr-l~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~ 248 (494)
+.+..-|..| +|.... +...+ +..++..- .-..-+.|.+||+|.++..
T Consensus 301 ----~~~fi~v~~~--~l~sk~vGesek~ir~~F~~A-----~~~~p~iiFiDEiDs~~~~ 350 (494)
T COG0464 301 ----RSRFISVKGS--ELLSKWVGESEKNIRELFEKA-----RKLAPSIIFIDEIDSLASG 350 (494)
T ss_pred ----CCeEEEeeCH--HHhccccchHHHHHHHHHHHH-----HcCCCcEEEEEchhhhhcc
Confidence 1344444555 665543 33333 33333321 1234568999999999864
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=83.72 E-value=2.4 Score=38.86 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=19.1
Q ss_pred ceEEEEEcccchhcccCChhHHHHHHHh
Q 042373 233 RVTYLVLDEADRMFDMGFEPQITRIVQN 260 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~gf~~~i~~Il~~ 260 (494)
+-.++++||...=++......+...+..
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~ 126 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILE 126 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 5689999999887776554544444433
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK13876 conjugal transfer coupling protein TraG; Provisional | Back alignment and domain information |
|---|
Probab=83.69 E-value=0.8 Score=51.81 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.6
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l 183 (494)
.+++++||||||||..+++|-|-.+
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~ 169 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTW 169 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhC
Confidence 6899999999999999999988654
|
|
| >PRK05748 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=83.69 E-value=5.4 Score=43.00 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=18.2
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.=+++.|+||+||| +|.+-++.++.
T Consensus 204 ~livIaarpg~GKT-~~al~ia~~~a 228 (448)
T PRK05748 204 DLIIVAARPSVGKT-AFALNIAQNVA 228 (448)
T ss_pred ceEEEEeCCCCCch-HHHHHHHHHHH
Confidence 44666799999999 56666666653
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=83.62 E-value=7.2 Score=41.94 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=34.2
Q ss_pred cceEEEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 232 TRVTYLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
...++||+|=+-++.. ......+..+...+.++--++.++|+........++.
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~ 234 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKT 234 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHH
Confidence 4578999999987642 2233445555566656555777888877666655544
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PHA00012 I assembly protein | Back alignment and domain information |
|---|
Probab=83.60 E-value=9.7 Score=39.54 Aligned_cols=53 Identities=19% Similarity=0.178 Sum_probs=33.5
Q ss_pred cceEEEEEcccchhccc---C--ChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 232 TRVTYLVLDEADRMFDM---G--FEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~---g--f~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
..=.++|+||||..+.. + -...+...+...++..-.++|-..-+..+...++.
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps~VDs~IR~ 137 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDISIMDKQARE 137 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHHHHhHHHHH
Confidence 56679999999998863 2 12335555555566555555555556666666654
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=83.60 E-value=4.5 Score=47.33 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=13.1
Q ss_pred EEEEcCCCCCchhhh
Q 042373 161 SVAITETGSGKTLAF 175 (494)
Q Consensus 161 vi~~a~TGSGKTlaf 175 (494)
+++++|||+|||...
T Consensus 599 ~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 599 FLLVGPSGVGKTETA 613 (852)
T ss_pred EEEECCCCCCHHHHH
Confidence 799999999999644
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=83.24 E-value=1.5 Score=43.54 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=25.6
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchh
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE 206 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTre 206 (494)
.++++|++|||||. +++-++..+... -..+++++|+..
T Consensus 15 r~viIG~sGSGKT~-li~~lL~~~~~~--------f~~I~l~t~~~n 52 (241)
T PF04665_consen 15 RMVIIGKSGSGKTT-LIKSLLYYLRHK--------FDHIFLITPEYN 52 (241)
T ss_pred eEEEECCCCCCHHH-HHHHHHHhhccc--------CCEEEEEecCCc
Confidence 68899999999994 666666655432 234566666433
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.23 E-value=6 Score=39.49 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=42.7
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
+..-.+|||||-=.=+|--....+...+..++..--+|+||.-.-..++.||.+
T Consensus 146 iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDR 199 (300)
T ss_pred hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhh
Confidence 345679999997655555556677777777888888999999888899999887
|
|
| >TIGR00665 DnaB replicative DNA helicase | Back alignment and domain information |
|---|
Probab=83.22 E-value=5.3 Score=42.75 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=17.8
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.=+++.|++|+||| +|.+-++.++.
T Consensus 196 ~l~vi~g~pg~GKT-~~~l~~a~~~a 220 (434)
T TIGR00665 196 DLIILAARPSMGKT-AFALNIAENAA 220 (434)
T ss_pred eEEEEEeCCCCChH-HHHHHHHHHHH
Confidence 45677799999999 46665655543
|
This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. |
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=82.99 E-value=1.4 Score=44.63 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=37.3
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
++++.+|+|.|||....+ +..=+... .-+.--| .+-.|+-|..+|. +|..=+.+.+
T Consensus 54 HvLl~GPPGlGKTTLA~I--IA~Emgvn---------~k~tsGp------~leK~gDlaaiLt-------~Le~~DVLFI 109 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHI--IANELGVN---------LKITSGP------ALEKPGDLAAILT-------NLEEGDVLFI 109 (332)
T ss_pred eEEeeCCCCCcHHHHHHH--HHHHhcCC---------eEecccc------cccChhhHHHHHh-------cCCcCCeEEE
Confidence 689999999999964332 21111100 0000011 1135666777775 3566678999
Q ss_pred cccchhc
Q 042373 240 DEADRMF 246 (494)
Q Consensus 240 DEaD~ml 246 (494)
||.|+|.
T Consensus 110 DEIHrl~ 116 (332)
T COG2255 110 DEIHRLS 116 (332)
T ss_pred ehhhhcC
Confidence 9999986
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=82.70 E-value=2.9 Score=38.53 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=30.1
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
+.+-+++++||--.-+|......+..++..+... .+++++.
T Consensus 112 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~tii~~s 152 (171)
T cd03228 112 LRDPPILILDEATSALDPETEALILEALRALAKG-KTVIVIA 152 (171)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCC-CEEEEEe
Confidence 3466899999998888887788888888777544 4455544
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=82.67 E-value=3.5 Score=41.68 Aligned_cols=71 Identities=11% Similarity=0.282 Sum_probs=54.9
Q ss_pred cCCccceeeccccccCCCCC--------CceEEEecCCCCCHhHHHhhhccCCCcceE----EEEeccc---CHHHHHHH
Q 042373 285 TNVCNLSIANSVRARGLDEK--------ELELVINFDAPNDYEDYVHHCCQSWLKSCA----FRFISEE---NAIYATDL 349 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~--------~v~~VInyd~P~s~~~yvhR~GRaGr~G~a----itfv~~~---~~~~~~~i 349 (494)
.|..+|+|.|+.++-||-.. .-++-|...+|.+....+|..||..|.|.+ |.|+..+ +.+++..+
T Consensus 59 ~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE~Rfas~v 138 (278)
T PF13871_consen 59 DGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGERRFASTV 138 (278)
T ss_pred CCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHHHHHHHHH
Confidence 89999999999999998653 234466789999999999999998877663 6666544 66777777
Q ss_pred HHHHHh
Q 042373 350 VKAFEL 355 (494)
Q Consensus 350 ~~~l~~ 355 (494)
.+-|+.
T Consensus 139 a~rL~s 144 (278)
T PF13871_consen 139 ARRLES 144 (278)
T ss_pred HHHHhh
Confidence 776654
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.62 E-value=5 Score=44.82 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=31.4
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHH
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~ 282 (494)
|.+=+++|+|||-.-+|.+.+..+...++.-- +++.+.|-.-.+.+..+.
T Consensus 531 L~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~tl~~~h 580 (604)
T COG4178 531 LHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRPTLWNFH 580 (604)
T ss_pred HcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccchhhHHHH
Confidence 56778999999988888776666666655421 344444444444444444
|
|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=82.53 E-value=2.3 Score=42.04 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=30.1
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~ 202 (494)
..+||... ...-+..|.-+++.|++|+|||...+--+...+ .+ |..++|++
T Consensus 49 ~~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a-~~--------Ge~vlyfS 99 (237)
T PRK05973 49 AATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAM-KS--------GRTGVFFT 99 (237)
T ss_pred cCCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH-hc--------CCeEEEEE
Confidence 35566333 333344566788889999999964443333333 21 44577765
|
|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=82.38 E-value=2.4 Score=46.12 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=31.8
Q ss_pred HHhCCCCCCChhHHHHHHHHHcCC--CEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 136 FSKLNHENPVAIQAPASALIISGL--DSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 136 l~~~g~~~ptpiQ~~aip~il~gr--dvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
|.++|| ++.|.+.+-.++... =+++.+|||||||.. +..++..+..
T Consensus 237 l~~Lg~---~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 237 LEKLGM---SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred HHHhCC---CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 344444 777888777777653 256779999999964 5566666654
|
|
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
Probab=82.35 E-value=2.3 Score=48.72 Aligned_cols=63 Identities=21% Similarity=0.100 Sum_probs=44.2
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..++|-|.+++-. ....+++.|..|||||.+..-=+...+... ... .-..|+|+-|+..|..+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~-~i~----P~~IL~lTFT~kAA~em 65 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEK-NVA----PWNILAITFTNKAAREM 65 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcC-CCC----HHHeeeeeccHHHHHHH
Confidence 4589999998864 356899999999999987665555444321 111 23588888887766655
|
Designed to identify pcrA members of the uvrD/rep subfamily. |
| >KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=81.91 E-value=7 Score=40.65 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCCchh
Q 042373 158 GLDSVAITETGSGKTL 173 (494)
Q Consensus 158 grdvi~~a~TGSGKTl 173 (494)
+..+++++|-|||||.
T Consensus 49 snsviiigprgsgkT~ 64 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTI 64 (408)
T ss_pred CCceEEEccCCCCceE
Confidence 4799999999999996
|
|
| >PRK06321 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=81.83 E-value=7.1 Score=42.55 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=23.9
Q ss_pred CChhHHHHHHHHHcC---CCE-EEEcCCCCCchhhhHHHHHHHHH
Q 042373 144 PVAIQAPASALIISG---LDS-VAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 144 ptpiQ~~aip~il~g---rdv-i~~a~TGSGKTlafllpil~~l~ 184 (494)
||.+ ..+-.++.| .++ |+.|.+|.|||. |.+-+..++.
T Consensus 210 ~tG~--~~LD~~t~Gl~~G~LiiiaarPgmGKTa-fal~ia~~~a 251 (472)
T PRK06321 210 PTHF--IDLDKMINGFSPSNLMILAARPAMGKTA-LALNIAENFC 251 (472)
T ss_pred ccCc--HHHHHHhcCCCCCcEEEEEeCCCCChHH-HHHHHHHHHH
Confidence 4554 334455544 455 556999999994 5666666653
|
|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=81.75 E-value=18 Score=41.21 Aligned_cols=52 Identities=13% Similarity=-0.092 Sum_probs=36.3
Q ss_pred HHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 152 SALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 152 ip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+-..+..+-.++.+|-|.|||.+-.+-+...+... +..++|.+|...-+.++
T Consensus 181 ~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~--------Gi~IlvTAH~~~ts~ev 232 (752)
T PHA03333 181 IFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFL--------EIDIVVQAQRKTMCLTL 232 (752)
T ss_pred HHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhc--------CCeEEEECCChhhHHHH
Confidence 33445567888999999999987665544333211 66899999977766665
|
|
| >TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG | Back alignment and domain information |
|---|
Probab=81.41 E-value=1 Score=50.63 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=30.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
.++++.||||||||..+++|-+-.. +..+||+=|.-|+...
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~-----------~gS~VV~DpKgE~~~~ 252 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY-----------GGPLVCLDPSTEVAPM 252 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC-----------CCCEEEEEChHHHHHH
Confidence 5899999999999999999975332 2235666666666543
|
This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems. |
| >PRK08840 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=81.32 E-value=7.9 Score=42.11 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=16.9
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.=+|+.|.||.|||. |.+-+..++.
T Consensus 218 ~LiviaarPg~GKTa-falnia~~~a 242 (464)
T PRK08840 218 DLIIVAARPSMGKTT-FAMNLCENAA 242 (464)
T ss_pred ceEEEEeCCCCchHH-HHHHHHHHHH
Confidence 445556999999995 5555555543
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=81.28 E-value=12 Score=38.60 Aligned_cols=106 Identities=13% Similarity=0.157 Sum_probs=52.1
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC-------------CCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCc
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVP-------------GDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGV 226 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~-------------~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~ 226 (494)
-.+++||.|+|||.... -+.+.++...+... ....|-..++.|.. .++ +-..+.+++..-..
T Consensus 30 a~Lf~G~~G~gk~~~a~-~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~---~~i-~id~ir~l~~~~~~ 104 (329)
T PRK08058 30 AYLFEGAKGTGKKATAL-WLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDG---QSI-KKDQIRYLKEEFSK 104 (329)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecccc---ccC-CHHHHHHHHHHHhh
Confidence 45999999999985433 34455443221100 11245566776642 111 11223333321110
Q ss_pred ceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCC
Q 042373 227 KITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 227 ~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
.-....-+++|+||||+|-... ...+.++++.-+....+|+ .++
T Consensus 105 -~~~~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il-~t~ 148 (329)
T PRK08058 105 -SGVESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAIL-LTE 148 (329)
T ss_pred -CCcccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEE-EeC
Confidence 0124567899999999987532 2234444444333444444 444
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=81.27 E-value=2.3 Score=39.30 Aligned_cols=49 Identities=18% Similarity=0.319 Sum_probs=33.5
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHH
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~ 279 (494)
..+-+++++||.-.-+|......+..++..+.....+++++.--+..+.
T Consensus 111 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 111 LHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 3466899999999999988888888888877543344444444333333
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK05636 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=81.25 E-value=6.2 Score=43.37 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=25.3
Q ss_pred CCE-EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc---cchhHHHhh
Q 042373 159 LDS-VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA---PTGELVRQQ 211 (494)
Q Consensus 159 rdv-i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~---PTreLa~Qi 211 (494)
.++ ++.|.||+|||. |.+-+..++..+. +..++|++ +..+|+..+
T Consensus 265 G~Liiiaarpg~GKT~-~al~~a~~~a~~~-------g~~v~~fSlEMs~~ql~~R~ 313 (505)
T PRK05636 265 GQMIIVAARPGVGKST-LALDFMRSASIKH-------NKASVIFSLEMSKSEIVMRL 313 (505)
T ss_pred CceEEEEeCCCCCHHH-HHHHHHHHHHHhC-------CCeEEEEEeeCCHHHHHHHH
Confidence 455 567999999995 4444554443211 33456663 445555443
|
|
| >PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=81.23 E-value=11 Score=35.66 Aligned_cols=52 Identities=21% Similarity=0.410 Sum_probs=42.1
Q ss_pred cceEEEEEcccchhcccCC--hhHHHHHHHhhcCCCcEEEecCCCChHHHHHHH
Q 042373 232 TRVTYLVLDEADRMFDMGF--EPQITRIVQNIRPDRQAVLFSPTFPPRVEILAR 283 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf--~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~ 283 (494)
..+++|||||+-..++.|+ .+.|..+++..|...-+|+..-..|+++..+|.
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 5689999999999998886 456777788777777888888888988877764
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.13 E-value=8.4 Score=43.21 Aligned_cols=114 Identities=17% Similarity=0.220 Sum_probs=62.2
Q ss_pred cCCCCCCCCCcccCCCCHHHHHHHHhC---CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCC
Q 042373 113 EKCAPKPIKTWRQTGLTTKILETFSKL---NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPV 189 (494)
Q Consensus 113 g~~~P~pi~~f~~l~L~~~ll~~l~~~---g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~ 189 (494)
...++.|-.+|++.|=-+.+...|+.. ..+.|-.+..-. +---|-|++.+|.|+|||+.+- .+...
T Consensus 423 e~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lAk-----alAne--- 491 (693)
T KOG0730|consen 423 EILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLAK-----ALANE--- 491 (693)
T ss_pred heeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHHH-----HHhhh---
Confidence 344667788999998556666665532 122222111111 1123789999999999997442 11111
Q ss_pred CCCCCCCeEEEEccchhHHHhh-hhhhHHH-HHHHhcCcceecccceEEEEEcccchhcc
Q 042373 190 VPGDDSPVGLVMAPTGELVRQQ-VRRGRMI-DLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 190 ~~~~~~p~aLIl~PTreLa~Qi-~TPgrl~-dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
...-++-++-=||-.-. +--++.+ +++.+.. ... -+.+.|||+|.+.-
T Consensus 492 -----~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR----~~a-P~IiFfDEiDsi~~ 541 (693)
T KOG0730|consen 492 -----AGMNFLSVKGPELFSKYVGESERAIREVFRKAR----QVA-PCIIFFDEIDALAG 541 (693)
T ss_pred -----hcCCeeeccCHHHHHHhcCchHHHHHHHHHHHh----hcC-CeEEehhhHHhHhh
Confidence 11234555555665544 2333333 3333321 122 27899999998874
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=81.06 E-value=2.9 Score=39.35 Aligned_cols=49 Identities=14% Similarity=0.283 Sum_probs=31.2
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCC-cEEEecCCCChHHH
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDR-QAVLFSPTFPPRVE 279 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~-Q~ilfSAT~~~~v~ 279 (494)
+.+-+++++||--.-+|......+..++..+.... .+++++.--...+.
T Consensus 87 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 34557999999988888777777777776654332 45555544333333
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=81.01 E-value=1.5 Score=44.07 Aligned_cols=45 Identities=22% Similarity=0.323 Sum_probs=30.3
Q ss_pred CCCCCcccCCCCHHHHHH-HHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHH
Q 042373 118 KPIKTWRQTGLTTKILET-FSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRH 182 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~-l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~ 182 (494)
..|-+|++|+||+.+.+. +.+.| =+|++++|||||+... ..|+.+
T Consensus 105 ~~IPt~eeL~LPevlk~la~~kRG-------------------LviiVGaTGSGKSTtm-AaMi~y 150 (375)
T COG5008 105 TKIPTFEELKLPEVLKDLALAKRG-------------------LVIIVGATGSGKSTTM-AAMIGY 150 (375)
T ss_pred ccCCcHHhcCCcHHHHHhhcccCc-------------------eEEEECCCCCCchhhH-HHHhcc
Confidence 346789999999876653 22233 2788899999999753 345444
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=80.84 E-value=2.4 Score=38.40 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=31.7
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChH
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPR 277 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~ 277 (494)
...-.++++||...=+|......+..++..+....++++++.--...
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 142 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL 142 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 34568999999998888777777777777664433455555443333
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases | Back alignment and domain information |
|---|
Probab=80.80 E-value=0.69 Score=44.50 Aligned_cols=13 Identities=38% Similarity=0.396 Sum_probs=11.6
Q ss_pred EEEEcCCCCCchh
Q 042373 161 SVAITETGSGKTL 173 (494)
Q Consensus 161 vi~~a~TGSGKTl 173 (494)
+++.|+.|||||.
T Consensus 1 ~vv~G~pGsGKSt 13 (234)
T PF01443_consen 1 IVVHGVPGSGKST 13 (234)
T ss_pred CEEEcCCCCCHHH
Confidence 4789999999997
|
Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=80.72 E-value=2.2 Score=39.50 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=29.6
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
+.+-+++++||.-.-+|......+..++..+.....+++++.
T Consensus 112 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~s 153 (173)
T cd03246 112 YGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIA 153 (173)
T ss_pred hcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 456789999999888888777788777777644333444443
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.52 E-value=3.1 Score=49.06 Aligned_cols=138 Identities=15% Similarity=0.139 Sum_probs=70.0
Q ss_pred CCCcccCCCCHHHHHHHHhCCCC---CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhH--HHHHHHHHcCCCCCCCCC
Q 042373 120 IKTWRQTGLTTKILETFSKLNHE---NPVAIQAPASALIISGLDSVAITETGSGKTLAFL--LPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~---~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafl--lpil~~l~~~~~~~~~~~ 194 (494)
...|+++|.-..+.+.|+++-.. .|.-.|.- .|.--|-++.++|.|||||+..- .+-+.+-..
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~---~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~--------- 328 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF---NITPPRGVLFHGPPGTGKTLMARALAAACSRGNR--------- 328 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc---ccCCCcceeecCCCCCchhHHHHhhhhhhccccc---------
Confidence 45688888777777778775321 11111111 12224789999999999997322 111111100
Q ss_pred CCeEEEEccc-hhHHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccC--ChhH--------HHHHHHhhcC
Q 042373 195 SPVGLVMAPT-GELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG--FEPQ--------ITRIVQNIRP 263 (494)
Q Consensus 195 ~p~aLIl~PT-reLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~g--f~~~--------i~~Il~~l~~ 263 (494)
..+.++--- --|-.-++...|=+.+|-... .-.....+.+||+|-+.-.- -.++ +-.++.-+..
T Consensus 329 -kisffmrkgaD~lskwvgEaERqlrllFeeA----~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGlds 403 (1080)
T KOG0732|consen 329 -KISFFMRKGADCLSKWVGEAERQLRLLFEEA----QKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDS 403 (1080)
T ss_pred -ccchhhhcCchhhccccCcHHHHHHHHHHHH----hccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCC
Confidence 000000000 001112245555445554322 12355688899999554321 1222 2223344456
Q ss_pred CCcEEEecCCC
Q 042373 264 DRQAVLFSPTF 274 (494)
Q Consensus 264 ~~Q~ilfSAT~ 274 (494)
.-|+++.+||.
T Consensus 404 RgqVvvigATn 414 (1080)
T KOG0732|consen 404 RGQVVVIGATN 414 (1080)
T ss_pred CCceEEEcccC
Confidence 78999999994
|
|
| >PRK06904 replicative DNA helicase; Validated | Back alignment and domain information |
|---|
Probab=80.51 E-value=11 Score=41.20 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=17.6
Q ss_pred CCE-EEEcCCCCCchhhhHHHHHHHHH
Q 042373 159 LDS-VAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 159 rdv-i~~a~TGSGKTlafllpil~~l~ 184 (494)
.++ |+.|.||.|||. |.+-+..++.
T Consensus 221 G~LiiIaarPg~GKTa-falnia~~~a 246 (472)
T PRK06904 221 SDLIIVAARPSMGKTT-FAMNLCENAA 246 (472)
T ss_pred CcEEEEEeCCCCChHH-HHHHHHHHHH
Confidence 444 556999999995 6666666553
|
|
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=80.48 E-value=5.3 Score=45.09 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=71.2
Q ss_pred HHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----------hhhhHHHHHHHh
Q 042373 154 LIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------VRRGRMIDLLCK 223 (494)
Q Consensus 154 ~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------~TPgrl~dll~~ 223 (494)
..+..|-.++..|--.|||..-. +++..++...+ |-.+++.+|.+.-+..+ -.|+.+.+++..
T Consensus 250 ~~fkqk~tVflVPRR~GKTwivv-~iI~~ll~s~~------Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG 322 (738)
T PHA03368 250 RHFRQRATVFLVPRRHGKTWFLV-PLIALALATFR------GIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG 322 (738)
T ss_pred HHhhccceEEEecccCCchhhHH-HHHHHHHHhCC------CCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC
Confidence 44456778899999999998555 77776654321 77899999998888776 122333333211
Q ss_pred cCc---------ceecc-----------cceEEEEEcccchhcccCChhHHHHHHHhhc-CCCcEEEecCCCCh
Q 042373 224 NGV---------KITNL-----------TRVTYLVLDEADRMFDMGFEPQITRIVQNIR-PDRQAVLFSPTFPP 276 (494)
Q Consensus 224 ~~~---------~~~~l-----------~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~-~~~Q~ilfSAT~~~ 276 (494)
... ..+.+ ...+++|+|||+-+-+. .+..|+-.+. .+.++|++|.|.+.
T Consensus 323 e~I~i~f~nG~kstI~FaSarntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 323 ETISFSFPDGSRSTIVFASSHNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTNTG 392 (738)
T ss_pred cEEEEEecCCCccEEEEEeccCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCCCC
Confidence 100 00111 14789999999987753 4444444332 48899999998654
|
|
| >PRK13822 conjugal transfer coupling protein TraG; Provisional | Back alignment and domain information |
|---|
Probab=80.34 E-value=1.1 Score=50.51 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=31.6
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
.++++.|+||||||..+++|-+-.. +..++|+=|-.|+...
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~-----------~gS~VV~DpKgEl~~~ 265 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKW-----------GGPLVVLDPSTEVAPM 265 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcC-----------CCCEEEEeCcHHHHHH
Confidence 5899999999999999999986422 2346666677777654
|
|
| >cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=80.29 E-value=4.7 Score=41.74 Aligned_cols=76 Identities=12% Similarity=0.092 Sum_probs=42.3
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchh----HHHhh------------hhhhHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE----LVRQQ------------VRRGRMIDLL 221 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTre----La~Qi------------~TPgrl~dll 221 (494)
|+=+.+.+|+|||||... +.++...... +..++++..-.. .+.+. .+...+..++
T Consensus 55 G~iteI~Gp~GsGKTtLa-l~~~~~~~~~--------g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 55 GRIIEIYGPESSGKTTLA-LHAIAEAQKL--------GGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHHHc--------CCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 567889999999999644 4444443321 456777755322 22222 1223333333
Q ss_pred HhcCcceecccceEEEEEcccchhc
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml 246 (494)
.. .+.-..+++||+|=+-.++
T Consensus 126 ~~----li~s~~~~lIVIDSvaal~ 146 (325)
T cd00983 126 DS----LVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred HH----HHhccCCCEEEEcchHhhc
Confidence 21 1122357889999877665
|
RecA couples ATP hydrolysis to DNA strand exchange. |
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=80.26 E-value=5.6 Score=38.30 Aligned_cols=17 Identities=47% Similarity=0.489 Sum_probs=14.2
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
|.-+++.+++|+|||..
T Consensus 16 g~~~li~G~~G~GKt~~ 32 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTF 32 (224)
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56788899999999863
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.14 E-value=8.1 Score=37.10 Aligned_cols=86 Identities=17% Similarity=0.059 Sum_probs=46.6
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH---HHhh-------------hhhhHHHHHHHh
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL---VRQQ-------------VRRGRMIDLLCK 223 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL---a~Qi-------------~TPgrl~dll~~ 223 (494)
=.++++|-.||||...+--+-+.... |-++++..|-..- ..-+ -.+..+.+.+..
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~---------g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~~~~~i~~~i~~ 76 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEA---------GMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSDTDIFDEIAA 76 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHHc---------CCeEEEEecccccccccceeeeccCCcccceecCChHHHHHHHHh
Confidence 35788999999998544433333222 5567777764221 1111 233455666654
Q ss_pred cCcceecccceEEEEEcccchhcccCChhHHHHHHH
Q 042373 224 NGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQ 259 (494)
Q Consensus 224 ~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~ 259 (494)
... ...+.+|.+|||+-+- .....++..+..
T Consensus 77 ~~~----~~~~~~v~IDEaQF~~-~~~v~~l~~lad 107 (201)
T COG1435 77 LHE----KPPVDCVLIDEAQFFD-EELVYVLNELAD 107 (201)
T ss_pred ccc----CCCcCEEEEehhHhCC-HHHHHHHHHHHh
Confidence 321 1227899999998443 222333444444
|
|
| >PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging [] | Back alignment and domain information |
|---|
Probab=80.03 E-value=5 Score=41.20 Aligned_cols=40 Identities=25% Similarity=0.443 Sum_probs=26.2
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL 207 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL 207 (494)
.++.|||||||+- +|+.++......+. .-.+++|+|+...
T Consensus 90 ~~VYGPTG~GKSq-----LlRNLis~~lI~P~--PETVfFItP~~~m 129 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-----LLRNLISCQLIQPP--PETVFFITPQKDM 129 (369)
T ss_pred EEEECCCCCCHHH-----HHHHhhhcCcccCC--CCceEEECCCCCC
Confidence 3567999999984 56666554433332 2358889998543
|
During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 494 | ||||
| 4a4d_A | 253 | Crystal Structure Of The N-Terminal Domain Of The H | 2e-31 | ||
| 3fe2_A | 242 | Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D | 8e-30 | ||
| 3iuy_A | 228 | Crystal Structure Of Ddx53 Dead-Box Domain Length = | 5e-19 | ||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 2e-16 | ||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 5e-04 | ||
| 1wrb_A | 253 | Crystal Structure Of The N-Terminal Reca-Like Domai | 6e-16 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 2e-15 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 9e-06 | ||
| 3ber_A | 249 | Human Dead-Box Rna-Helicase Ddx47, Conserved Domain | 2e-14 | ||
| 2gxq_A | 207 | Hera N-Terminal Domain In Complex With Amp, Crystal | 4e-11 | ||
| 2pl3_A | 236 | Human Dead-Box Rna Helicase Ddx10, Dead Domain In C | 6e-11 | ||
| 3mwj_A | 207 | Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap | 1e-10 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 8e-09 | ||
| 3ly5_A | 262 | Ddx18 Dead-Domain Length = 262 | 2e-08 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 2e-08 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 2e-08 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 2e-08 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 2e-08 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 2e-08 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 2e-08 | ||
| 3eiq_A | 414 | Crystal Structure Of Pdcd4-eif4a Length = 414 | 4e-08 | ||
| 2zu6_A | 388 | Crystal Structure Of The Eif4a-Pdcd4 Complex Length | 5e-08 | ||
| 1hv8_A | 367 | Crystal Structure Of A Dead Box Protein From The Hy | 1e-07 | ||
| 3pey_A | 395 | S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length | 3e-07 | ||
| 3pew_A | 395 | S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 | 3e-07 | ||
| 1vec_A | 206 | Crystal Structure Of The N-Terminal Domain Of RckP5 | 3e-07 | ||
| 2kbe_A | 226 | Solution Structure Of Amino-Terminal Domain Of Dbp5 | 4e-07 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 4e-07 | ||
| 3bor_A | 237 | Crystal Structure Of The Deadc Domain Of Human Tran | 6e-07 | ||
| 2g9n_A | 221 | Structure Of The Dead Domain Of Human Eukaryotic In | 2e-06 | ||
| 2vso_A | 395 | Crystal Structure Of A Translation Initiation Compl | 3e-06 | ||
| 3sqw_A | 579 | Structure Of Mss116p (Nte Deletion) Bound To Ssrna | 2e-05 | ||
| 3dkp_A | 245 | Human Dead-Box Rna-Helicase Ddx52, Conserved Domain | 3e-05 | ||
| 3i5x_A | 563 | Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len | 3e-05 | ||
| 3sqx_A | 512 | Structure Of Mss116p (Nte And C-Tail Double Deletio | 4e-05 | ||
| 1qva_A | 223 | Yeast Initiation Factor 4a N-Terminal Domain Length | 5e-05 | ||
| 1qde_A | 224 | Crystal Structure Of The Atpase Domain Of Translati | 6e-05 | ||
| 1fuu_A | 394 | Yeast Initiation Factor 4a Length = 394 | 9e-05 | ||
| 3fho_B | 508 | Structure Of S. Pombe Dbp5 Length = 508 | 8e-04 |
| >pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 | Back alignment and structure |
|
| >pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 | Back alignment and structure |
|
| >pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 | Back alignment and structure |
|
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 | Back alignment and structure |
|
| >pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1 Length = 207 | Back alignment and structure |
|
| >pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 | Back alignment and structure |
|
| >pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form Length = 207 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|3LY5|A Chain A, Ddx18 Dead-Domain Length = 262 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 | Back alignment and structure |
|
| >pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 | Back alignment and structure |
|
| >pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 | Back alignment and structure |
|
| >pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A Human Dead-Box Protein Length = 206 | Back alignment and structure |
|
| >pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p Length = 226 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation Initiation Factor 4a-2 Length = 237 | Back alignment and structure |
|
| >pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic Initiation Factor 4a, Eif4a Length = 221 | Back alignment and structure |
|
| >pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 | Back alignment and structure |
|
| >pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 | Back alignment and structure |
|
| >pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 | Back alignment and structure |
|
| >pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 | Back alignment and structure |
|
| >pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 | Back alignment and structure |
|
| >pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 | Back alignment and structure |
|
| >pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 | Back alignment and structure |
|
| >pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 250 bits (642), Expect = 4e-81
Identities = 86/231 (37%), Positives = 118/231 (51%), Gaps = 47/231 (20%)
Query: 97 TRMSP----AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPAS 152
+ + YR+ ++ +R PKP+ + + +++ ++ N P AIQA
Sbjct: 1 SMRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 60
Query: 153 ALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ-- 210
+ +SGLD V + +TGSGKTL++LLP + HI QP + GD P+ LV+APT EL +Q
Sbjct: 61 PVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD-GPICLVLAPTRELAQQVQ 119
Query: 211 -------------------------QVRR------------GRMIDLLCKNGVKITNLTR 233
Q+R GR+ID L TNL R
Sbjct: 120 QVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG---KTNLRR 176
Query: 234 VTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284
TYLVLDEADRM DMGFEPQI +IV IRPDRQ +++S T+P V LA
Sbjct: 177 TTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED 227
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 230 bits (590), Expect = 2e-73
Identities = 70/217 (32%), Positives = 103/217 (47%), Gaps = 43/217 (19%)
Query: 108 DLKIRE-KCAPKPIKTWRQT-GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAIT 165
DLK E + PKP ++ +L++ ++ P IQ+ A +I+ G+D + +
Sbjct: 5 DLKSGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVA 64
Query: 166 ETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ--------------- 210
+TG+GKTL++L+P H+ QP + P LV+ PT EL
Sbjct: 65 QTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKS 124
Query: 211 -----------QVRR------------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247
Q+ GR+ DL N NL +TYLV+DEAD+M D
Sbjct: 125 ICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNN---SVNLRSITYLVIDEADKMLD 181
Query: 248 MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284
M FEPQI +I+ ++RPDRQ V+ S T+P V LA
Sbjct: 182 MEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALS 218
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 2e-68
Identities = 64/252 (25%), Positives = 104/252 (41%), Gaps = 57/252 (22%)
Query: 86 RKNFYTQAREITRMSPAYRK------------QLDLKIREKCAPKPIKTWRQTGLTTKIL 133
FY + + +K+ P+PI+ + L I+
Sbjct: 9 PGEFYIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIII 68
Query: 134 ETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGD 193
+ +K ++ P IQ + +I SG D +A +TGSGKT AFLLP+L + E P +
Sbjct: 69 DNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELG 128
Query: 194 DSPVGLVMAPTGELVRQ---------------------------QVRR------------ 214
P ++++PT EL Q Q
Sbjct: 129 -RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATP 187
Query: 215 GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI--RPDRQAVLFSP 272
GR++D + + ++VLDEADRM DMGF + RI+ ++ RP+ Q ++FS
Sbjct: 188 GRLLDFVDR---TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSA 244
Query: 273 TFPPRVEILARK 284
TFP ++ +A +
Sbjct: 245 TFPEEIQRMAGE 256
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHC-----CQSWLKSCAFRFI 338
K + IA SV +RGLD K ++ VIN+D P+ +DYVH + ++ +F F
Sbjct: 347 KNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSF-FD 405
Query: 339 SEENAIYATDLVKAFELSELVVRDDLK 365
E++ A DLVK E S V D L+
Sbjct: 406 PEKDRAIAADLVKILEGSGQTVPDFLR 432
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 2e-61
Identities = 69/223 (30%), Positives = 96/223 (43%), Gaps = 58/223 (26%)
Query: 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFL 176
P I+++ + I+ + P +Q A +I D +A +TGSGKT AFL
Sbjct: 11 PPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFL 70
Query: 177 LPMLRHIWEQPPVVPGD------------DSPVGLVMAPTGELVRQ-------------- 210
LP+L I+ P P+ LV+APT EL Q
Sbjct: 71 LPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRV 130
Query: 211 -------------QVRR------------GRMIDLLCKNGVKITNLTRVTYLVLDEADRM 245
Q+R GR++D++ + L YLVLDEADRM
Sbjct: 131 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER---GKIGLDFCKYLVLDEADRM 187
Query: 246 FDMGFEPQITRIVQ--NIRPD--RQAVLFSPTFPPRVEILARK 284
DMGFEPQI RIV+ + P R ++FS TFP +++LAR
Sbjct: 188 LDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARD 230
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH------HCCQSWLKSCAFRF 337
++ + +A +V ARGLD ++ VINFD P+D E+YVH A F
Sbjct: 323 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN---LGLATSF 379
Query: 338 ISEENAIYATDLVKAFELSELVVRDDLKAVADS 370
+E N DL+ ++ V L+ +A
Sbjct: 380 FNERNINITKDLLDLLVEAKQEVPSWLENMAYE 412
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 193 bits (494), Expect = 5e-59
Identities = 53/231 (22%), Positives = 93/231 (40%), Gaps = 54/231 (23%)
Query: 102 AYRKQLDLKIREKCAPKPIKTWRQT----GLTTKILETFSKLNHENPVAIQAPASALIIS 157
R + + ++ P PI T++Q + +++L+ + P IQ A +++
Sbjct: 6 FLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLH 65
Query: 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ------- 210
G + +A TGSGKTLAF +P+L + + L+++PT EL Q
Sbjct: 66 GRELLASAPTGSGKTLAFSIPILMQLKQPAN-----KGFRALIISPTRELASQIHRELIK 120
Query: 211 ------------------------QVRR---------GRMIDLLCKNGVKITNLTRVTYL 237
+ + R+I LL ++ I +L V +L
Sbjct: 121 ISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGI-DLASVEWL 179
Query: 238 VLDEADRMFD---MGFEPQITRIVQNIRPD-RQAVLFSPTFPPRVEILARK 284
V+DE+D++F+ GF Q+ I + +FS TF VE +
Sbjct: 180 VVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKL 230
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 3e-58
Identities = 64/219 (29%), Positives = 94/219 (42%), Gaps = 49/219 (22%)
Query: 112 REKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGK 171
+ A I+ + + L I +++ P IQ A I+ D +A +TGSGK
Sbjct: 14 PDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGK 73
Query: 172 TLAFLLPMLRHIWEQPPVVPGD---DSPVGLVMAPTGELVRQ------------------ 210
T AFL+P++ H+ Q P L++APT EL Q
Sbjct: 74 TAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCV 133
Query: 211 ---------QVRR------------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG 249
Q+R GR++D + +L Y+VLDEADRM DMG
Sbjct: 134 VYGGADTHSQIREVQMGCHLLVATPGRLVDFI---EKNKISLEFCKYIVLDEADRMLDMG 190
Query: 250 FEPQITRIVQNIRP----DRQAVLFSPTFPPRVEILARK 284
FEPQI +I++ +RQ ++FS TFP ++ LA
Sbjct: 191 FEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAAD 229
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 4e-38
Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 42/209 (20%)
Query: 113 EKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKT 172
EK I + L+ K L+ + + IQ L + G D + +TGSGKT
Sbjct: 17 EKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKT 76
Query: 173 LAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL------------------------- 207
LAFL+P+L ++ D L+++PT EL
Sbjct: 77 LAFLVPVLEALYRLQWTST--DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGG 134
Query: 208 --VRQQVRR-----------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQI 254
++ + R GR++ + V + T + LVLDEADR+ DMGF +
Sbjct: 135 KDLKHEAERINNINILVCTPGRLLQHM-DETVSF-HATDLQMLVLDEADRILDMGFADTM 192
Query: 255 TRIVQNIRPDRQAVLFSPTFPPRVEILAR 283
+++N+ RQ +LFS T V+ LAR
Sbjct: 193 NAVIENLPKKRQTLLFSATQTKSVKDLAR 221
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 1e-37
Identities = 64/208 (30%), Positives = 91/208 (43%), Gaps = 47/208 (22%)
Query: 116 APKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAF 175
+ KT++ G+T + E +L P IQ A L + G D + + ETGSGKT AF
Sbjct: 38 EEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAF 97
Query: 176 LLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL---VRQQVRR------------------ 214
LP+L + E P LV+ PT EL + +Q
Sbjct: 98 ALPILNALLETPQ------RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDS 151
Query: 215 ------------------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITR 256
GR+ID L K NL + YLV+DEADR+ +M FE ++ +
Sbjct: 152 MSQSLALAKKPHIIIATPGRLIDHL--ENTKGFNLRALKYLVMDEADRILNMDFETEVDK 209
Query: 257 IVQNIRPDRQAVLFSPTFPPRVEILARK 284
I++ I DR+ LFS T +V+ L R
Sbjct: 210 ILKVIPRDRKTFLFSATMTKKVQKLQRA 237
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 7e-35
Identities = 60/195 (30%), Positives = 78/195 (40%), Gaps = 43/195 (22%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
L +ILE P IQA A L + G D + TG+GKTLAF LP+ +
Sbjct: 7 PLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERL--- 63
Query: 187 PPVVPGDDSPVGLVMAPTGELVRQ-------------------------QVRR------- 214
P P LV+ PT EL Q Q
Sbjct: 64 APSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADA 123
Query: 215 -----GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269
GR +D L + + L+RV VLDEAD M MGFE ++ ++ P RQ +L
Sbjct: 124 VVATPGRALDYLRQGVLD---LSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLL 180
Query: 270 FSPTFPPRVEILARK 284
FS T P + LA +
Sbjct: 181 FSATLPSWAKRLAER 195
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 2e-33
Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 49/203 (24%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
+ L ++L ++ E P IQ + + +SG D +A + G+GK+ A+L+P+L
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 63
Query: 182 HIWEQPPVVPGDDSPVGLVMAPTGEL----------------------------VRQQVR 213
+ D+ +V+ PT EL +R +
Sbjct: 64 RL------DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 117
Query: 214 R------------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI 261
R GR++DL+ K + + V +VLDEAD++ F + I+ +
Sbjct: 118 RLDDTVHVVIATPGRILDLIKK---GVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTL 174
Query: 262 RPDRQAVLFSPTFPPRVEILARK 284
+RQ +L+S TFP V+
Sbjct: 175 PKNRQILLYSATFPLSVQKFMNS 197
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 2e-33
Identities = 47/201 (23%), Positives = 74/201 (36%), Gaps = 52/201 (25%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
I+E L P IQ + G V ++TG+GKT A+LLP++ I
Sbjct: 10 PFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKI--- 66
Query: 187 PPVVPGDDSPVGLVMAPTGELVRQ-------------------------------QVRR- 214
P ++ APT EL Q + +
Sbjct: 67 ---KPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL 123
Query: 215 -----------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP 263
GR+ D + + + + LV+DEAD M DMGF + +I +
Sbjct: 124 NVQPHIVIGTPGRINDFIREQALD---VHTAHILVVDEADLMLDMGFITDVDQIAARMPK 180
Query: 264 DRQAVLFSPTFPPRVEILARK 284
D Q ++FS T P +++ +K
Sbjct: 181 DLQMLVFSATIPEKLKPFLKK 201
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 6e-32
Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 45/196 (22%)
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQP 187
+ L+ ++ N IQ + ++ G D +A +TGSGKTLAFL+P + I +
Sbjct: 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR 120
Query: 188 PVVPGDDSPVG-LVMAPTGEL---------------------------VRQQVRR----- 214
+ G L+++PT EL + ++
Sbjct: 121 F---MPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGI 177
Query: 215 -------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQA 267
GR++D + + LV+DEADR+ D+GFE ++ +I++ + RQ
Sbjct: 178 NIIVATPGRLLDHMQNT--PGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQT 235
Query: 268 VLFSPTFPPRVEILAR 283
+LFS T +VE LAR
Sbjct: 236 MLFSATQTRKVEDLAR 251
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 9e-32
Identities = 52/205 (25%), Positives = 75/205 (36%), Gaps = 47/205 (22%)
Query: 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLL 177
K + + L +L E P AIQ A II G D +A ++G+GKT F +
Sbjct: 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 77
Query: 178 PMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ--------------------------- 210
L+ I +P L++APT EL Q
Sbjct: 78 AALQRI------DTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVE 131
Query: 211 QVRR-----------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQ 259
GR+ D + + + ++ +LDEAD M GF+ QI +I
Sbjct: 132 DAEGLRDAQIVVGTPGRVFDNIQR---RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFT 188
Query: 260 NIRPDRQAVLFSPTFPPRVEILARK 284
+ P Q VL S T P V + K
Sbjct: 189 LLPPTTQVVLLSATMPNDVLEVTTK 213
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R I+ ++ + I+ + ARG+D +++ LVIN+D P + E+Y+H
Sbjct: 298 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 345
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 3e-31
Identities = 51/205 (24%), Positives = 75/205 (36%), Gaps = 47/205 (22%)
Query: 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLL 177
K + + L +L E P AIQ A II G D +A ++G+GKT F +
Sbjct: 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 70
Query: 178 PMLRHIWEQPPVVPGDDSPVGLVMAPTGEL---------------------------VRQ 210
L+ I +P L++APT EL +
Sbjct: 71 AALQRI------DTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVE 124
Query: 211 QVRR-----------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQ 259
GR+ D + + + ++ +LDEAD M GF+ QI +I
Sbjct: 125 DAEGLRDAQIVVGTPGRVFDNIQR---RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFT 181
Query: 260 NIRPDRQAVLFSPTFPPRVEILARK 284
+ P Q VL S T P V + K
Sbjct: 182 LLPPTTQVVLLSATMPNDVLEVTTK 206
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 4e-31
Identities = 52/216 (24%), Positives = 83/216 (38%), Gaps = 48/216 (22%)
Query: 108 DLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITET 167
++ T+ GL +L E P AIQ A II G D +A +++
Sbjct: 24 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQS 83
Query: 168 GSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL-------------------- 207
G+GKT F + +L+ + L++APT EL
Sbjct: 84 GTGKTATFSISVLQCL------DIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCH 137
Query: 208 -------VRQQVRR------------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDM 248
V + +R+ GR+ D++ + + + LVLDEAD M +
Sbjct: 138 ACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR---RSLRTRAIKMLVLDEADEMLNK 194
Query: 249 GFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284
GF+ QI + + + P Q VL S T P + + K
Sbjct: 195 GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNK 230
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R I+ ++ + I+ V ARGLD ++ L+IN+D PN+ E Y+H
Sbjct: 315 RESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 362
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 9e-31
Identities = 52/207 (25%), Positives = 78/207 (37%), Gaps = 49/207 (23%)
Query: 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLL 177
+ + + L +L E P AIQ A I G D +A ++G+GKT F +
Sbjct: 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAI 86
Query: 178 PMLRHIWEQPPVVPGDDSPVGLVMAPTGEL---------------------------VRQ 210
+L+ + LV+APT EL VR
Sbjct: 87 SILQQL------EIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN 140
Query: 211 QVRR-------------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRI 257
++++ GR+ D+L + + + VLDEAD M GF+ QI I
Sbjct: 141 EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW---IKMFVLDEADEMLSRGFKDQIYEI 197
Query: 258 VQNIRPDRQAVLFSPTFPPRVEILARK 284
Q + Q VL S T P V + +K
Sbjct: 198 FQKLNTSIQVVLLSATMPTDVLEVTKK 224
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-30
Identities = 28/221 (12%), Positives = 65/221 (29%), Gaps = 47/221 (21%)
Query: 131 KILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVV 190
F K ++ Q + I+ G + TG GKT ++ L +
Sbjct: 9 DFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKS- 67
Query: 191 PGDDSPVGLVMAPTGELVRQ-----------------------QVRRGRMIDLLCKNGVK 227
++ PT LV+Q + + + ++
Sbjct: 68 --------ALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH 119
Query: 228 I---T-----------NLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273
I + + R ++ +D+ D + ++ I + FS
Sbjct: 120 ILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTI 179
Query: 274 FPPRVEILARKTNVCNLSIANSV-RARGLDEKELELVINFD 313
++ + L ++++ + RG+ ++NF
Sbjct: 180 KQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFT 220
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 1e-30
Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 49/207 (23%)
Query: 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLL 177
+ + ++ L+ +L E P AIQ A I G D +A ++G+GKT F +
Sbjct: 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 96
Query: 178 PMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ--------------------------- 210
+L+ I + LV+APT EL +Q
Sbjct: 97 SILQQI------ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA 150
Query: 211 QVRR-------------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRI 257
+V++ GR+ D+L + + + + VLDEAD M GF+ QI I
Sbjct: 151 EVQKLQMEAPHIIVGTPGRVFDMLNR---RYLSPKYIKMFVLDEADEMLSRGFKDQIYDI 207
Query: 258 VQNIRPDRQAVLFSPTFPPRVEILARK 284
Q + + Q VL S T P V + +K
Sbjct: 208 FQKLNSNTQVVLLSATMPSDVLEVTKK 234
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R I+ ++ + I + ARG+D +++ LVIN+D P + E+Y+H
Sbjct: 319 RDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 366
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-30
Identities = 51/282 (18%), Positives = 96/282 (34%), Gaps = 60/282 (21%)
Query: 59 MKRAKKKKRDKNREIIKSKIKIDYQQLRKNFYTQAREITRMSPAYRKQLDLKIREKCAPK 118
R ++ R ++ + R ++ + + + ++ K
Sbjct: 7 GNRDQRNFGRNQRNNNSNRYRNSRFNSRPRTRSREDDDEVHFDKTTFSKLIHVPKEDNSK 66
Query: 119 PI---KTWRQTGLTTKILETFSKLNHENPVAIQAPA--SALIISGLDSVAITETGSGKTL 173
+ + L +I + +++ +Q L D +A +TG+GKT
Sbjct: 67 EVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTF 126
Query: 174 AFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL-------------------------- 207
AFL+P+ +H+ +++APT +L
Sbjct: 127 AFLIPIFQHLINTKF--DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSL 184
Query: 208 -----VRQQVRR-------------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG 249
R + + GR+ID+L K K V Y VLDEADR+ ++G
Sbjct: 185 VGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR--FVDYKVLDEADRLLEIG 242
Query: 250 FEPQITRIVQNI-------RPDRQAVLFSPTFPPRVEILARK 284
F + I + + + +LFS T +V+ LA
Sbjct: 243 FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANN 284
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+ V ARG+D + V+ P++ +Y+H
Sbjct: 397 VCTDVGARGMDFPNVHEVLQIGVPSELANYIH 428
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 2e-30
Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 48/207 (23%)
Query: 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGL--DSVAITETGSGKTLAF 175
+K++ + L ++L+ + P IQ A L+++ + +A +++G+GKT AF
Sbjct: 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148
Query: 176 LLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ------------------------- 210
+L ML + P + P L ++PT EL Q
Sbjct: 149 VLAMLSQV------EPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK 202
Query: 211 ---QVRR---------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD-MGFEPQITRI 257
+ G ++D K K + ++ VLDEAD M G + Q RI
Sbjct: 203 LERGQKISEQIVIGTPGTVLDWCSKL--KFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 260
Query: 258 VQNIRPDRQAVLFSPTFPPRVEILARK 284
+ + + Q +LFS TF V A+K
Sbjct: 261 QRMLPRNCQMLLFSATFEDSVWKFAQK 287
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-29
Identities = 53/202 (26%), Positives = 86/202 (42%), Gaps = 48/202 (23%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
T+ L ++L + E P IQ A + I+G D +A + G+GKT AF++P L
Sbjct: 22 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 81
Query: 182 HIWEQPPVVPGDDSPVGLVMAPTGEL---------------------------VRQQVRR 214
+ P + L+M PT EL +R + R
Sbjct: 82 KV------KPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR 135
Query: 215 ------------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIR 262
GR++DL + K+ +L+ + ++DEAD+M F+ I +I+ +
Sbjct: 136 LNETVHILVGTPGRVLDLASR---KVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP 192
Query: 263 PDRQAVLFSPTFPPRVEILARK 284
P Q++LFS TFP V+ K
Sbjct: 193 PTHQSLLFSATFPLTVKEFMVK 214
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R ++ + + + + RG+D + + +VINFD P E Y+H
Sbjct: 297 RNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLH 344
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 49/197 (24%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWE 185
L+ IL E P IQ L ++ + VA TGSGKT +F +P++ + E
Sbjct: 12 NLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE 71
Query: 186 QPPVVPGDDSPVGLVMAPTGELVRQ---------------------------QVRR---- 214
++ +++ PT EL Q Q++
Sbjct: 72 -------NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNA 124
Query: 215 -------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQA 267
GR++D + + + L V Y +LDEAD M +MGF + +I+ D++
Sbjct: 125 NIVVGTPGRILDHINRGTLN---LKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRI 181
Query: 268 VLFSPTFPPRVEILARK 284
+LFS T P + LA+K
Sbjct: 182 LLFSATMPREILNLAKK 198
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 5e-06
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
IA V +RG+D +L VIN+ P + E Y+H
Sbjct: 293 IATDVMSRGIDVNDLNCVINYHLPQNPESYMH 324
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 3e-29
Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 53/195 (27%)
Query: 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQP 187
+ KI + ++ +N +Q+ L++ G + V +TGSGKT A+ +P+L
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----- 55
Query: 188 PVVPGDDSPVGLVMAPTGELVRQ---------------------------QVRR------ 214
LV+ PT EL RQ Q+ R
Sbjct: 56 -------GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADI 108
Query: 215 -----GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269
GR++DL K + L+ +++DEAD MF+MGF I I+ + L
Sbjct: 109 VVATPGRLLDLWSKGVID---LSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGL 165
Query: 270 FSPTFPPRVEILARK 284
FS T P + + +
Sbjct: 166 FSATIPEEIRKVVKD 180
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 7e-08
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R + + ++ I V +RGLD +E VINFDAP D Y+H
Sbjct: 255 RNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIH 302
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 3e-29
Identities = 45/203 (22%), Positives = 73/203 (35%), Gaps = 49/203 (24%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
+ L+ +LE E P +Q A L GLD + ++G+GKT F L
Sbjct: 25 DFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALD 84
Query: 182 HIWEQPPVVPGDDSPVGLVMAPTGEL----------------------------VRQQVR 213
+ V + S L++APT E+ + Q
Sbjct: 85 SL------VLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKT 138
Query: 214 R-----------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG-FEPQITRIVQNI 261
R GR+ L+ N + +LDEAD++ + G F+ QI I ++
Sbjct: 139 RLKKCHIAVGSPGRIKQLIEL---DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSL 195
Query: 262 RPDRQAVLFSPTFPPRVEILARK 284
+Q + S T+P + K
Sbjct: 196 PASKQMLAVSATYPEFLANALTK 218
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 5e-29
Identities = 49/205 (23%), Positives = 83/205 (40%), Gaps = 48/205 (23%)
Query: 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGL--DSVAITETGSGKTLAFLL 177
+K++ + L ++L+ + P IQ A L+++ + +A +++G+GKT AF+L
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 178 PMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ--------------------------- 210
ML + P + P L ++PT EL Q
Sbjct: 84 AMLSQV------EPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 137
Query: 211 -QVRR---------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD-MGFEPQITRIVQ 259
+ G ++D K + ++ VLDEAD M G + Q RI +
Sbjct: 138 RGQKISEQIVIGTPGTVLDWCSKLKF--IDPKKIKVFVLDEADVMIATQGHQDQSIRIQR 195
Query: 260 NIRPDRQAVLFSPTFPPRVEILARK 284
+ + Q +LFS TF V A+K
Sbjct: 196 MLPRNCQMLLFSATFEDSVWKFAQK 220
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Query: 292 IANSVRARGLDEKELELVINFDAPN------DYEDYVH 323
+ +V ARG+D +++ +VINFD P D E Y+H
Sbjct: 321 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLH 358
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 6e-29
Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 47/203 (23%)
Query: 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGL--DSVAITETGSGKTLAFLL 177
K++ + GL ++L+ + + P IQ A L++ + +A +++G+GKT AF L
Sbjct: 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSL 63
Query: 178 PMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ-----------------------QVRR 214
ML + P D SP + +AP+ EL RQ +
Sbjct: 64 TMLTRV------NPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN 117
Query: 215 ------------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDM-GFEPQITRIVQNI 261
G ++DL+ + K+ L ++ VLDEAD M D G Q R+ + +
Sbjct: 118 KQINAQVIVGTPGTVLDLMRR---KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFL 174
Query: 262 RPDRQAVLFSPTFPPRVEILARK 284
D Q VLFS TF V A+K
Sbjct: 175 PKDTQLVLFSATFADAVRQYAKK 197
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 292 IANSVRARGLDEKELELVINFDAPN------DYEDYVH 323
I +V ARG+D + +V+N+D P D Y+H
Sbjct: 298 ITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIH 335
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 8e-29
Identities = 47/211 (22%), Positives = 78/211 (36%), Gaps = 57/211 (27%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPA--SALIISGLDSVAITETGSGKTLAFLLPMLRHIW 184
L +I + +++ +Q L D +A +TG+GKT AFL+P+ +H+
Sbjct: 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLI 86
Query: 185 EQPPVVPGDDSPVGLVMAPTGEL-------------------------------VRQQVR 213
+++APT +L R +
Sbjct: 87 NTKF--DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMN 144
Query: 214 R-------------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQN 260
+ GR+ID+L K K V Y VLDEADR+ ++GF + I
Sbjct: 145 KMNKLRPNIVIATPGRLIDVLEKYSNKFFR--FVDYKVLDEADRLLEIGFRDDLETISGI 202
Query: 261 I-------RPDRQAVLFSPTFPPRVEILARK 284
+ + + +LFS T +V+ LA
Sbjct: 203 LNEKNSKSADNIKTLLFSATLDDKVQKLANN 233
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+ V ARG+D + V+ P++ +Y+H
Sbjct: 346 VCTDVGARGMDFPNVHEVLQIGVPSELANYIH 377
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-28
Identities = 49/205 (23%), Positives = 83/205 (40%), Gaps = 48/205 (23%)
Query: 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGL--DSVAITETGSGKTLAFLL 177
+K++ + L ++L+ + P IQ A L+++ + +A +++G+GKT AF+L
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 178 PMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ--------------------------- 210
ML + P + P L ++PT EL Q
Sbjct: 151 AMLSQV------EPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 204
Query: 211 -QVRR---------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD-MGFEPQITRIVQ 259
+ G ++D K + ++ VLDEAD M G + Q RI +
Sbjct: 205 RGQKISEQIVIGTPGTVLDWCSKLKF--IDPKKIKVFVLDEADVMIATQGHQDQSIRIQR 262
Query: 260 NIRPDRQAVLFSPTFPPRVEILARK 284
+ + Q +LFS TF V A+K
Sbjct: 263 MLPRNCQMLLFSATFEDSVWKFAQK 287
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPN------DYEDYVH 323
R ++ R + + + +V ARG+D +++ +VINFD P D E Y+H
Sbjct: 372 RAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLH 425
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-27
Identities = 41/205 (20%), Positives = 72/205 (35%), Gaps = 51/205 (24%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
+R L ++L E+P +Q I G+D + ++G GKT F+L L+
Sbjct: 15 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74
Query: 182 HIWEQPPVVPGDDSPVGLVMAPTGEL----------------------------VRQQVR 213
+ P LVM T EL +++
Sbjct: 75 QL------EPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE 128
Query: 214 R-------------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD-MGFEPQITRIVQ 259
GR++ L K NL + + +LDE D+M + + + I +
Sbjct: 129 VLKKNCPHIVVGTPGRILALARN---KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFR 185
Query: 260 NIRPDRQAVLFSPTFPPRVEILARK 284
++Q ++FS T + + RK
Sbjct: 186 MTPHEKQVMMFSATLSKEIRPVCRK 210
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 6e-26
Identities = 41/205 (20%), Positives = 72/205 (35%), Gaps = 51/205 (24%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
+R L ++L E+P +Q I G+D + ++G GKT F+L L+
Sbjct: 9 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 68
Query: 182 HIWEQPPVVPGDDSPVGLVMAPTGEL----------------------------VRQQVR 213
+ P LVM T EL +++
Sbjct: 69 QL------EPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE 122
Query: 214 R-------------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD-MGFEPQITRIVQ 259
GR++ L K NL + + +LDE D+M + + + I +
Sbjct: 123 VLKKNCPHIVVGTPGRILALARN---KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFR 179
Query: 260 NIRPDRQAVLFSPTFPPRVEILARK 284
++Q ++FS T + + RK
Sbjct: 180 MTPHEKQVMMFSATLSKEIRPVCRK 204
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A ++ RG+D + + + N+D P D + Y+H
Sbjct: 305 VATNLFGRGMDIERVNIAFNYDMPEDSDTYLH 336
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 1e-12
Identities = 73/475 (15%), Positives = 137/475 (28%), Gaps = 129/475 (27%)
Query: 3 ETTTKQLPVVQIEIDPLDAFMNDMECSFAE-HPNNCFRLGR-----RLPAEDSHSASDYE 56
ET Q I DAF+++ +C + P + S +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT---LR 66
Query: 57 LFMKRAKKKKRDKNREIIK----SKIKIDYQQLRKNFYTQAREITRMSPAYRKQLDLKIR 112
LF K E+++ ++I+Y+ L T+ R+ + M+ Y +Q D
Sbjct: 67 LFWTL-----LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 113 EKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPA----SALIISGLDSVAITET- 167
+ R K+ + +L V I + + + S +
Sbjct: 122 DNQVFAKYNVSRLQ-PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 168 ---------GSGKTLAFLLPMLRHIWEQ--PPVVPGDDSPVGLVM---APTGELVRQQVR 213
+ + +L ML+ + Q P D + + + EL R
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 214 RGRMIDLL-----------------CKNGVKITNLTR------------VTYLVLDEADR 244
+ LL CK + +T TR T++ LD
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCK--ILLT--TRFKQVTDFLSAATTTHISLDH--- 293
Query: 245 MFDMGFEP----QITRIVQNIRPD---RQAVLFSP-----------TFPPRVEILARKTN 286
M P + + RP R+ + +P + + N
Sbjct: 294 -HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW-KHVN 351
Query: 287 VCNLS--IANSVRARGLDEKEL-----ELVINF--DAP---------------NDYEDYV 322
L+ I +S+ L+ E L + F A +D V
Sbjct: 352 CDKLTTIIESSLNV--LEPAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 323 HHCCQSWLKSCAFRFISEENAIYATDLVKAFELSELVVRDDLKAVADSFIAKVNL 377
+ + S + +E+ I + L V ++ A+ S + N+
Sbjct: 409 NKLHK---YSLVEKQ-PKESTISIPSI----YLELKVKLENEYALHRSIVDHYNI 455
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 6e-07
Identities = 53/319 (16%), Positives = 105/319 (32%), Gaps = 76/319 (23%)
Query: 68 DKNREIIKSKIKIDYQQLRKNFYTQAREITRMSPAYRKQLDLKIREKCAPKPIKTWRQTG 127
D+ + ++ + Q L RE+ +P + IR+ W+
Sbjct: 301 DEVKSLLLKYLDCRPQDLP-------REVLTTNPRRLSIIAESIRDG--LATWDNWKHVN 351
Query: 128 L--TTKILETFSKLNHENPVAIQAPASALIISGL-DSVAITETGSGKTLAFLLPMLRHIW 184
T I+E+ LN P + L + S I L+ + W
Sbjct: 352 CDKLTTIIESS--LNVLEPAEYRKMFDRLSV--FPPSAHIPT----ILLSLI-------W 396
Query: 185 EQPPVVPGDDSPVGLVMAPTGELVR-----QQVRRGRM-I-DLLCKNGVKITNLTRVTYL 237
S V +V+ +L + +Q + + I + + VK+ N +
Sbjct: 397 FDV-----IKSDVMVVVN---KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 238 VLD--EADRMFDM-GFEPQ---------ITRIVQNIRPDRQAVLFSPTFPPRVEI--LAR 283
++D + FD P I ++NI + LF F ++ L +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF---LDFRFLEQ 505
Query: 284 KTNVCNLSIANSVRARGLDE-KELELVINFDAPND---------YEDYVHHCCQSWLKS- 332
K + + S A + L+ ++L+ + ND D++ ++ + S
Sbjct: 506 K--IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 333 --CAFRFI--SEENAIYAT 347
R +E+ AI+
Sbjct: 564 YTDLLRIALMAEDEAIFEE 582
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 4e-12
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH------HCCQSWLKSCAFRF 337
++ + +A +V ARGLD ++ VINFD P+D E+YVH A F
Sbjct: 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN---LGLATSF 149
Query: 338 ISEENAIYATDLVKAFELSELVVRDDLKAVADS 370
+E N DL+ ++ V L+ +A
Sbjct: 150 FNERNINITKDLLDLLVEAKQEVPSWLENMAYE 182
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-09
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHC-----CQSWLKSCAFRFI 338
+ ++ +A V ++GLD ++ VIN+D P + E+YVH + + F
Sbjct: 101 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTF-IN 159
Query: 339 SEENAIYATDLVKAFELSELVVRDDLKAVA 368
+ DL ++ V L+ +
Sbjct: 160 KACDESVLMDLKALLLEAKQKVPPVLQVLH 189
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 5e-08
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R E + R N+ +A V ARG+D ++ V NFD P + Y+H
Sbjct: 69 RNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLH 116
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 2e-07
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R +++ K +A V ARG+D + + LVIN+D P + E YVH
Sbjct: 74 RFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVH 121
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 6e-07
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A V ARGLD +++LV+++ P+ E Y H
Sbjct: 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQH 117
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 8e-07
Identities = 29/183 (15%), Positives = 54/183 (29%), Gaps = 46/183 (25%)
Query: 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMI- 218
+ + + TG GKTL ++ + + V L++APT LV Q R +
Sbjct: 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKV--------LMLAPTKPLVLQHAESFRRLF 76
Query: 219 --------------------DLLCKNGVKIT--------------NLTRVTYLVLDEADR 244
+ V + +L V+ +V DEA R
Sbjct: 77 NLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHR 136
Query: 245 MFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSIANSVRARGLDEK 304
I R + + + + + E + V N + R +
Sbjct: 137 AVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIME---VINNLGIEHIEYRSENSP 193
Query: 305 ELE 307
++
Sbjct: 194 DVR 196
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVH 323
+A V ARGLD +++LV+++ P+ E Y H
Sbjct: 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQH 114
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-06
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH 323
R+ + K + +A ++ RG+D + + + N+D P D + Y+H
Sbjct: 70 RLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLH 117
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-06
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 292 IANSVRARGLDEKELELVINFDAPNDYEDYVHH 324
I+ + ARG+D +++ LVIN+D P + E+Y+H
Sbjct: 85 ISTDLLARGIDVQQVSLVINYDLPANKENYIHR 117
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 1e-04
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 277 RVEILAR-KTNVCNLSIANSVRARGLDEKELELVINFDAPN------DYEDYVH 323
R I+ R + + I +V ARG+D K++ +V+NFD P DYE Y+H
Sbjct: 73 RASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLH 126
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 5e-04
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 167 TGSGKTL-AFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR 213
TGSGKT A + H+ ++ + V +V+ LV Q R
Sbjct: 57 TGSGKTRVAVYI-AKDHLDKKKK--ASEPGKV-IVLVNKVLLVEQLFR 100
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 494 | |||
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 100.0 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 100.0 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 100.0 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.98 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.98 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.97 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.97 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.97 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.97 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.97 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.97 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.97 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.97 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.97 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.97 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.97 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.97 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.97 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.97 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.97 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.97 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.97 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.96 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.96 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.96 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.96 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.96 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.96 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.96 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.96 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.95 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.95 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.95 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.94 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.94 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.94 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.94 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.93 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.91 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.84 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.8 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.8 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.8 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.78 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.76 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.74 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.73 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.72 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.64 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.64 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.62 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.59 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.58 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.58 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.57 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.56 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.55 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.54 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.48 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.45 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 98.88 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.16 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.11 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 98.9 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 98.64 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 98.63 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 98.01 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 97.88 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.08 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.6 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 96.46 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.39 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.36 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.3 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 96.15 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.15 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 96.11 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 96.01 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.0 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.97 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.92 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.76 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 95.72 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 95.58 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 95.52 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 95.51 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 95.48 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 95.42 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 95.33 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.23 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 95.14 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 95.13 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.13 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 95.12 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 95.1 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.09 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 95.06 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 94.94 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 94.86 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 94.85 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 94.73 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 94.58 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 94.57 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 94.53 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 94.33 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 94.26 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 94.22 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 94.03 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.01 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 93.94 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 93.8 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 93.79 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 93.74 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 93.74 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 93.67 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 93.65 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 93.63 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 93.62 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 93.58 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 93.55 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 93.5 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 93.43 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 93.38 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 93.24 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 93.22 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 93.12 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 93.06 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 92.88 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 92.23 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 92.14 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 92.13 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 92.11 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 92.0 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 91.87 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 91.85 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 91.83 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 91.73 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 91.35 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 91.05 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 90.94 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 90.83 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 90.82 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 90.58 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 90.51 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 90.43 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 90.42 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 90.37 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 90.3 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 90.14 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 89.82 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 89.81 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 89.78 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 89.78 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 89.75 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 89.2 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 89.15 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 88.89 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 88.87 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 88.77 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 88.5 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 88.29 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 88.28 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 88.26 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 88.22 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 88.03 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 87.85 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 87.68 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 87.56 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 87.4 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 87.25 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 87.16 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 86.51 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 86.12 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 85.77 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 85.51 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 85.42 | |
| 1e9r_A | 437 | Conjugal transfer protein TRWB; coupling protein, | 84.29 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 84.15 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 84.04 | |
| 2l8b_A | 189 | Protein TRAI, DNA helicase I; RECD, hydrolase; NMR | 83.86 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 82.59 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 82.56 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 82.3 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 81.99 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 81.86 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 80.65 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 80.44 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 80.42 |
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-53 Score=451.19 Aligned_cols=258 Identities=35% Similarity=0.576 Sum_probs=235.5
Q ss_pred hcCceeccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 106 QLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 106 ~~~i~v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
+..+++.|.++|.|+.+|++++|++.++++|+++||.+|||+|.++||.+++|+|++++|+||||||++|++|++.++..
T Consensus 41 ~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 41 NIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp GSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCeEEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCc
Q 042373 186 QPPVVPGDDSPVGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGV 226 (494)
Q Consensus 186 ~~~~~~~~~~p~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~ 226 (494)
..... ...++++|||+|||+||.|+ +||++|.+++.++
T Consensus 121 ~~~~~-~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~-- 197 (434)
T 2db3_A 121 DPHEL-ELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT-- 197 (434)
T ss_dssp SCCCC-CTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT--
T ss_pred ccccc-ccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC--
Confidence 64321 22378999999999999998 7999999999874
Q ss_pred ceecccceEEEEEcccchhcccCChhHHHHHHHhh--cCCCcEEEecCCCChHHHHHHHh--------------------
Q 042373 227 KITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI--RPDRQAVLFSPTFPPRVEILARK-------------------- 284 (494)
Q Consensus 227 ~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l--~~~~Q~ilfSAT~~~~v~~l~~~-------------------- 284 (494)
...++++++|||||||+|+++||.+++..|+..+ ++.+|+++||||+|+.+..++..
T Consensus 198 -~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i 276 (434)
T 2db3_A 198 -FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDV 276 (434)
T ss_dssp -SCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTE
T ss_pred -CcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccccccccc
Confidence 3578999999999999999999999999999985 67899999999999999888875
Q ss_pred -----------------------------------------------------------------------cCCccceee
Q 042373 285 -----------------------------------------------------------------------TNVCNLSIA 293 (494)
Q Consensus 285 -----------------------------------------------------------------------~g~~~ILVa 293 (494)
.|..+||||
T Consensus 277 ~~~~~~~~~~~k~~~l~~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLva 356 (434)
T 2db3_A 277 KQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIA 356 (434)
T ss_dssp EEEEEECCGGGHHHHHHHHHHHCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEE
T ss_pred ceEEEEeCcHHHHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 789999999
Q ss_pred ccccccCCCCCCceEEEecCCCCCHhHHHhhhccCC---CcceEEEEecc-cCHHHHHHHHHHHHhccCcchHHHHHH
Q 042373 294 NSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSW---LKSCAFRFISE-ENAIYATDLVKAFELSELVVRDDLKAV 367 (494)
Q Consensus 294 Tdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaG---r~G~aitfv~~-~~~~~~~~i~~~l~~~~~~vp~~l~~~ 367 (494)
|++++||||+++|++|||||+|.+..+|+||+||+| +.|.|++|+++ ++...+..+.+.|+.++++||++|.++
T Consensus 357 T~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 357 TSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp CGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred chhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 999999999999999999999999999999999955 57899999995 578899999999999999999998653
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-46 Score=389.11 Aligned_cols=258 Identities=36% Similarity=0.554 Sum_probs=232.6
Q ss_pred ceeccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCC
Q 042373 109 LKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPP 188 (494)
Q Consensus 109 i~v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~ 188 (494)
|.+.|.++|.|+.+|++++|++.++++|..+||..|||+|.++||.++.|+|++++||||||||++|++|+++++.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999875431
Q ss_pred C------------CCCCCCCeEEEEccchhHHHhh---------------------------------------hhhhHH
Q 042373 189 V------------VPGDDSPVGLVMAPTGELVRQQ---------------------------------------VRRGRM 217 (494)
Q Consensus 189 ~------------~~~~~~p~aLIl~PTreLa~Qi---------------------------------------~TPgrl 217 (494)
. .....++++|||+|||+|+.|+ +||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 1 0112258899999999999997 799999
Q ss_pred HHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhh--cC--CCcEEEecCCCChHHHHHHHh---------
Q 042373 218 IDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI--RP--DRQAVLFSPTFPPRVEILARK--------- 284 (494)
Q Consensus 218 ~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l--~~--~~Q~ilfSAT~~~~v~~l~~~--------- 284 (494)
.+++..+. ..++++++||+||||++++++|...+..++... +. .+|+++||||+++.+..++..
T Consensus 163 ~~~l~~~~---~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 239 (417)
T 2i4i_A 163 VDMMERGK---IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLA 239 (417)
T ss_dssp HHHHHTTS---BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHcCC---cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEE
Confidence 99988643 468899999999999999999999999999853 33 689999999999988877654
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 240 ~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~ 319 (417)
T 2i4i_A 240 VGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 319 (417)
T ss_dssp EC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred eCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHH
Confidence
Q ss_pred ----cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhcc
Q 042373 285 ----TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSE 357 (494)
Q Consensus 285 ----~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~ 357 (494)
.|..+|||||+++++|+|+|++++||+||+|.+...|+||+||+|| .|.|++|+++.+...+..+.+++....
T Consensus 320 ~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 399 (417)
T 2i4i_A 320 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 399 (417)
T ss_dssp HHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTT
T ss_pred HHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999665 688999999999999999999999999
Q ss_pred CcchHHHHHHHH
Q 042373 358 LVVRDDLKAVAD 369 (494)
Q Consensus 358 ~~vp~~l~~~~~ 369 (494)
+.+|.+|..++.
T Consensus 400 ~~~~~~l~~~~~ 411 (417)
T 2i4i_A 400 QEVPSWLENMAY 411 (417)
T ss_dssp CCCCHHHHHHHT
T ss_pred CcCCHHHHHHHH
Confidence 999999988864
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=366.45 Aligned_cols=244 Identities=30% Similarity=0.444 Sum_probs=219.2
Q ss_pred eccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCC
Q 042373 111 IREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVV 190 (494)
Q Consensus 111 v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~ 190 (494)
......+.++.+|++++|++.++++|.++||.+|+|+|.++|+.++.|+|++++++||||||++|++|+++.+...
T Consensus 27 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~---- 102 (410)
T 2j0s_A 27 FETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ---- 102 (410)
T ss_dssp CCCCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT----
T ss_pred cCCCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc----
Confidence 3344555678899999999999999999999999999999999999999999999999999999999999876432
Q ss_pred CCCCCCeEEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecc
Q 042373 191 PGDDSPVGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNL 231 (494)
Q Consensus 191 ~~~~~p~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l 231 (494)
..++++|||+|||+|+.|+ +||++|.+++..+ ...+
T Consensus 103 --~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~---~~~~ 177 (410)
T 2j0s_A 103 --VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR---SLRT 177 (410)
T ss_dssp --SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT---SSCC
T ss_pred --cCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC---CccH
Confidence 1267999999999999997 6999999999874 3467
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh---------------------------
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK--------------------------- 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~--------------------------- 284 (494)
.++++||+||||+|++++|...+..++..+++.+|+++||||+++.+..+...
T Consensus 178 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (410)
T 2j0s_A 178 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV 257 (410)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEE
T ss_pred hheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEe
Confidence 89999999999999999999999999999999999999999999887765543
Q ss_pred ------------------------------------------------------------------cCCccceeeccccc
Q 042373 285 ------------------------------------------------------------------TNVCNLSIANSVRA 298 (494)
Q Consensus 285 ------------------------------------------------------------------~g~~~ILVaTdv~~ 298 (494)
.|..+|||||++++
T Consensus 258 ~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 337 (410)
T 2j0s_A 258 EREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 337 (410)
T ss_dssp SSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGS
T ss_pred CcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhh
Confidence 68899999999999
Q ss_pred cCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCcchHH
Q 042373 299 RGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELVVRDD 363 (494)
Q Consensus 299 rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~ 363 (494)
+|+|+|++++||+||+|.+...|+||+||+|| .|.+++|+++.+...+..+.++++....++|.+
T Consensus 338 ~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 338 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSC
T ss_pred CcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccc
Confidence 99999999999999999999999999999655 788999999999999999999998877777643
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=377.53 Aligned_cols=245 Identities=27% Similarity=0.423 Sum_probs=148.3
Q ss_pred ceeccCCCCCC---CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 109 LKIREKCAPKP---IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 109 i~v~g~~~P~p---i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l 183 (494)
+.+.+.+.|.| +.+|++++|++.+++.|.++||..|||+|.++||.++.| +|+|++||||||||++|++|+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp EEEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred ceecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 44555555554 678999999999999999999999999999999999997 9999999999999999999999877
Q ss_pred HcCCCCCCCCCCCeEEEEccchhHHHhh-------------------------------------hhhhHHHHHHHhcCc
Q 042373 184 WEQPPVVPGDDSPVGLVMAPTGELVRQQ-------------------------------------VRRGRMIDLLCKNGV 226 (494)
Q Consensus 184 ~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------------------------------------~TPgrl~dll~~~~~ 226 (494)
... ..++++|||+|||+|+.|+ +||++|.+++...
T Consensus 157 ~~~------~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-- 228 (479)
T 3fmp_B 157 EPA------NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-- 228 (479)
T ss_dssp CTT------SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTS--
T ss_pred hhc------CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhc--
Confidence 432 2267999999999999997 7999999999753
Q ss_pred ceecccceEEEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh---------------------
Q 042373 227 KITNLTRVTYLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK--------------------- 284 (494)
Q Consensus 227 ~~~~l~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~--------------------- 284 (494)
+.+.++++++|||||||+|++ .+|...+..++..++..+|+++||||++..+..++..
T Consensus 229 ~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 308 (479)
T 3fmp_B 229 KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIK 308 (479)
T ss_dssp CCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------
T ss_pred CCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCce
Confidence 346789999999999999997 6899999999999999999999999999998877765
Q ss_pred ------------------------------------------------------------------------cCCcccee
Q 042373 285 ------------------------------------------------------------------------TNVCNLSI 292 (494)
Q Consensus 285 ------------------------------------------------------------------------~g~~~ILV 292 (494)
.|..+|||
T Consensus 309 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv 388 (479)
T 3fmp_B 309 QYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 388 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 68899999
Q ss_pred eccccccCCCCCCceEEEecCCC------CCHhHHHhhhccCCC---cceEEEEecccC-HHHHHHHHHHHHhccCcch
Q 042373 293 ANSVRARGLDEKELELVINFDAP------NDYEDYVHHCCQSWL---KSCAFRFISEEN-AIYATDLVKAFELSELVVR 361 (494)
Q Consensus 293 aTdv~~rGlDi~~v~~VInyd~P------~s~~~yvhR~GRaGr---~G~aitfv~~~~-~~~~~~i~~~l~~~~~~vp 361 (494)
||+++++|||+|+|++|||||+| .+...|+||+||+|| .|.|++|+++.+ ..++..|.+.+......++
T Consensus 389 ~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~ 467 (479)
T 3fmp_B 389 TTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 467 (479)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred EccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECC
Confidence 99999999999999999999999 567899999999765 688999998764 7788888888877666655
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-43 Score=360.89 Aligned_cols=247 Identities=30% Similarity=0.448 Sum_probs=214.8
Q ss_pred ccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC
Q 042373 112 REKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVP 191 (494)
Q Consensus 112 ~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~ 191 (494)
...+.+..+.+|+++++++.+++.|.++||..|+++|.++|+.++.|+|+++++|||||||++|++|+++.+....
T Consensus 31 ~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~---- 106 (414)
T 3eiq_A 31 IESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL---- 106 (414)
T ss_dssp CCCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS----
T ss_pred cCCCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC----
Confidence 3456677889999999999999999999999999999999999999999999999999999999999999875432
Q ss_pred CCCCCeEEEEccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecc
Q 042373 192 GDDSPVGLVMAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNL 231 (494)
Q Consensus 192 ~~~~p~aLIl~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l 231 (494)
.++++||++||++|+.|+ +||++|.+++... ...+
T Consensus 107 --~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~ 181 (414)
T 3eiq_A 107 --KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR---YLSP 181 (414)
T ss_dssp --CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHT---SSCS
T ss_pred --CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcC---Cccc
Confidence 267899999999999997 6999999999874 3467
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh---------------------------
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK--------------------------- 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~--------------------------- 284 (494)
.++++||+||||++.+++|...+..++..+++.+|+++||||++..+..+...
T Consensus 182 ~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (414)
T 3eiq_A 182 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINV 261 (414)
T ss_dssp TTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEEC
T ss_pred ccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEe
Confidence 88999999999999999999999999999999999999999999988877764
Q ss_pred ------------------------------------------------------------------cCCccceeeccccc
Q 042373 285 ------------------------------------------------------------------TNVCNLSIANSVRA 298 (494)
Q Consensus 285 ------------------------------------------------------------------~g~~~ILVaTdv~~ 298 (494)
.|..+|||||++++
T Consensus 262 ~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 341 (414)
T 3eiq_A 262 EREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLA 341 (414)
T ss_dssp SSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC
T ss_pred ChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccc
Confidence 68899999999999
Q ss_pred cCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCcchHHHHHH
Q 042373 299 RGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELVVRDDLKAV 367 (494)
Q Consensus 299 rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~~~ 367 (494)
+|+|+|++++||+||+|.+...|+||+||+|| .|.|++|+++.+...+..+.++++....++|.++.++
T Consensus 342 ~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 342 RGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp --CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred cCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 99999999999999999999999999999765 5789999999999999999999999999999777654
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=355.49 Aligned_cols=239 Identities=28% Similarity=0.407 Sum_probs=212.3
Q ss_pred CCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCC
Q 042373 116 APKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGD 193 (494)
Q Consensus 116 ~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~ 193 (494)
.+.++.+|++++|++.+++.|.++||..|+|+|.++|+.++.| +|+++++|||||||++|++|+++++....
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~------ 93 (412)
T 3fht_A 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN------ 93 (412)
T ss_dssp TTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS------
T ss_pred CccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC------
Confidence 3356889999999999999999999999999999999999998 99999999999999999999999875432
Q ss_pred CCCeEEEEccchhHHHhh-------------------------------------hhhhHHHHHHHhcCcceecccceEE
Q 042373 194 DSPVGLVMAPTGELVRQQ-------------------------------------VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 194 ~~p~aLIl~PTreLa~Qi-------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.++++|||+||++|+.|+ +||++|.+++... +...++++++
T Consensus 94 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~--~~~~~~~~~~ 171 (412)
T 3fht_A 94 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL--KFIDPKKIKV 171 (412)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTS--CSSCGGGCCE
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhc--CCcChhhCcE
Confidence 267999999999999997 7999999988653 3456889999
Q ss_pred EEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-------------------------------
Q 042373 237 LVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------- 284 (494)
Q Consensus 237 lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------- 284 (494)
||+||||++++ .+|...+..++..++..+|++++|||+++.+..++..
T Consensus 172 iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (412)
T 3fht_A 172 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRD 251 (412)
T ss_dssp EEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHH
T ss_pred EEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChH
Confidence 99999999997 7899999999999999999999999999988877765
Q ss_pred --------------------------------------------------------------cCCccceeeccccccCCC
Q 042373 285 --------------------------------------------------------------TNVCNLSIANSVRARGLD 302 (494)
Q Consensus 285 --------------------------------------------------------------~g~~~ILVaTdv~~rGlD 302 (494)
.|..+|||||+++++|+|
T Consensus 252 ~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 331 (412)
T 3fht_A 252 EKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 331 (412)
T ss_dssp HHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCC
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCC
Confidence 689999999999999999
Q ss_pred CCCceEEEecCCC------CCHhHHHhhhccCCC---cceEEEEeccc-CHHHHHHHHHHHHhccCcchH
Q 042373 303 EKELELVINFDAP------NDYEDYVHHCCQSWL---KSCAFRFISEE-NAIYATDLVKAFELSELVVRD 362 (494)
Q Consensus 303 i~~v~~VInyd~P------~s~~~yvhR~GRaGr---~G~aitfv~~~-~~~~~~~i~~~l~~~~~~vp~ 362 (494)
+|++++||+||+| .+...|+||+||+|| .|.+++|+++. +...+..+.+.++.....++.
T Consensus 332 ip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 332 VEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp CTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred ccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 9999999999999 578999999999766 68899999876 478889999998877777663
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-41 Score=344.51 Aligned_cols=242 Identities=31% Similarity=0.503 Sum_probs=210.1
Q ss_pred CCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDS 195 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~ 195 (494)
..+.+|++++|++.++++|.++||..|+|+|.++|+.++.| +|+++++|||||||++|++|++.++.... .+
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~------~~ 75 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED------AS 75 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC------CS
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC------CC
Confidence 35689999999999999999999999999999999999998 99999999999999999999999875422 26
Q ss_pred CeEEEEccchhHHHhh-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEc
Q 042373 196 PVGLVMAPTGELVRQQ-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLD 240 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlD 240 (494)
+++||++||++|+.|+ +||++|.+++... ...+.++++||+|
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~---~~~~~~~~~iIiD 152 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRK---LMQLQKIKIFVLD 152 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTT---CBCCTTCCEEEEE
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcC---CcccccCCEEEEE
Confidence 7899999999999997 7999999988764 3468899999999
Q ss_pred ccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------
Q 042373 241 EADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------- 284 (494)
Q Consensus 241 EaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------- 284 (494)
|||++.+ ++|...+..+...++++.|++++|||+++.+..++..
T Consensus 153 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 153 EADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp THHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHH
T ss_pred ChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHH
Confidence 9999998 7889999999999999999999999999988887765
Q ss_pred ----------------------------------------------------------cCCccceeeccccccCCCCCCc
Q 042373 285 ----------------------------------------------------------TNVCNLSIANSVRARGLDEKEL 306 (494)
Q Consensus 285 ----------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v 306 (494)
.|..+|||||+++++|+|+|++
T Consensus 233 ~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~ 312 (395)
T 3pey_A 233 VLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTV 312 (395)
T ss_dssp HHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTE
T ss_pred HHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccC
Confidence 6899999999999999999999
Q ss_pred eEEEecCCCC------CHhHHHhhhccCCC---cceEEEEeccc-CHHHHHHHHHHHH-hccCcch-HHHHHHH
Q 042373 307 ELVINFDAPN------DYEDYVHHCCQSWL---KSCAFRFISEE-NAIYATDLVKAFE-LSELVVR-DDLKAVA 368 (494)
Q Consensus 307 ~~VInyd~P~------s~~~yvhR~GRaGr---~G~aitfv~~~-~~~~~~~i~~~l~-~~~~~vp-~~l~~~~ 368 (494)
++||+||+|. +...|+||+||+|| .|.+++|+++. +...+..+.+.+. .....+| ..+..+.
T Consensus 313 ~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 386 (395)
T 3pey_A 313 SMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVE 386 (395)
T ss_dssp EEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSCHHHHH
T ss_pred CEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHHHHHHH
Confidence 9999999999 99999999999765 57899999864 5567777777776 4444444 2344443
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=348.76 Aligned_cols=238 Identities=27% Similarity=0.434 Sum_probs=214.2
Q ss_pred CCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCe
Q 042373 118 KPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPV 197 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~ 197 (494)
.+..+|++++|++.++++|.++||..|+|+|.++++.++.|+|+++++|||||||++|++|++.++... ..+++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~------~~~~~ 91 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK------LNKIQ 91 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT------SCSCC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc------cCCcc
Confidence 456789999999999999999999999999999999999999999999999999999999999887432 12678
Q ss_pred EEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEE
Q 042373 198 GLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 198 aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
+||++||++|+.|+ +||++|.+++... ...+.++++||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~---~~~~~~~~~vI 168 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK---VADLSDCSLFI 168 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT---CSCCTTCCEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhC---CcccccCCEEE
Confidence 99999999999997 6999999888764 34688999999
Q ss_pred EcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh----------------------------------
Q 042373 239 LDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK---------------------------------- 284 (494)
Q Consensus 239 lDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~---------------------------------- 284 (494)
+||||++++.+|...+..++..+++..|++++|||++..+..+...
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 248 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHC 248 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHH
T ss_pred EeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHH
Confidence 9999999999999999999999999999999999999988776654
Q ss_pred ---------------------------------------------------------cCCccceeeccccccCCCCCCce
Q 042373 285 ---------------------------------------------------------TNVCNLSIANSVRARGLDEKELE 307 (494)
Q Consensus 285 ---------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~ 307 (494)
.|..+|||||+++++|+|+|+++
T Consensus 249 l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~ 328 (400)
T 1s2m_A 249 LNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVN 328 (400)
T ss_dssp HHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEE
T ss_pred HHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCC
Confidence 68899999999999999999999
Q ss_pred EEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCcchHHH
Q 042373 308 LVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELVVRDDL 364 (494)
Q Consensus 308 ~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l 364 (494)
+||+||+|.+...|+||+||+|| .|.|++|+++.+...+..|.+.+....+++|.++
T Consensus 329 ~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 388 (400)
T 1s2m_A 329 VVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATI 388 (400)
T ss_dssp EEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSC
T ss_pred EEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccc
Confidence 99999999999999999999665 6799999999999999999999988888887654
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=371.02 Aligned_cols=235 Identities=26% Similarity=0.421 Sum_probs=205.8
Q ss_pred CCCCCcccCC----CCHHHHHHHHhCCCCCCChhHHHHHHHHH--cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC
Q 042373 118 KPIKTWRQTG----LTTKILETFSKLNHENPVAIQAPASALII--SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVP 191 (494)
Q Consensus 118 ~pi~~f~~l~----L~~~ll~~l~~~g~~~ptpiQ~~aip~il--~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~ 191 (494)
.+..+|+++. |++.++++|.++||..|+|+|.++|+.++ .|+|+|++||||||||++|++|+++++......
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~-- 91 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-- 91 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc--
Confidence 3344566554 99999999999999999999999999999 789999999999999999999999999875421
Q ss_pred CCCCCeEEEEccchhHHHhh--------------------------------------------hhhhHHHHHHHhcCcc
Q 042373 192 GDDSPVGLVMAPTGELVRQQ--------------------------------------------VRRGRMIDLLCKNGVK 227 (494)
Q Consensus 192 ~~~~p~aLIl~PTreLa~Qi--------------------------------------------~TPgrl~dll~~~~~~ 227 (494)
...++++|||+|||+||.|+ +||++|.+++... .
T Consensus 92 ~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~--~ 169 (579)
T 3sqw_A 92 SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY--S 169 (579)
T ss_dssp STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH--H
T ss_pred ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc--c
Confidence 22367999999999999987 7999999988764 2
Q ss_pred eecccceEEEEEcccchhcccCChhHHHHHHHhhcC-------CCcEEEecCCCChHHHHHHHh----------------
Q 042373 228 ITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP-------DRQAVLFSPTFPPRVEILARK---------------- 284 (494)
Q Consensus 228 ~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~-------~~Q~ilfSAT~~~~v~~l~~~---------------- 284 (494)
...++++++|||||||+|+++||.+.+..|+..++. .+|+++||||+++.+..++..
T Consensus 170 ~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~ 249 (579)
T 3sqw_A 170 NKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKN 249 (579)
T ss_dssp HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSS
T ss_pred ccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcc
Confidence 346889999999999999999999999999887743 679999999999988776554
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 250 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~ 329 (579)
T 3sqw_A 250 EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNK 329 (579)
T ss_dssp SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHH
T ss_pred ccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHH
Confidence
Q ss_pred ---------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHH
Q 042373 285 ---------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKA 352 (494)
Q Consensus 285 ---------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~ 352 (494)
.|..+|||||++++||||+|+|++||+||+|.+...|+||+||+|| .|.|++|+++.+..++..|.+.
T Consensus 330 R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 409 (579)
T 3sqw_A 330 RTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 409 (579)
T ss_dssp HHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999655 6789999999999999999887
Q ss_pred HHhc
Q 042373 353 FELS 356 (494)
Q Consensus 353 l~~~ 356 (494)
....
T Consensus 410 ~~~~ 413 (579)
T 3sqw_A 410 KNIV 413 (579)
T ss_dssp HCCC
T ss_pred hCCC
Confidence 6543
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=368.50 Aligned_cols=225 Identities=26% Similarity=0.453 Sum_probs=200.0
Q ss_pred CCHHHHHHHHhCCCCCCChhHHHHHHHHH--cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch
Q 042373 128 LTTKILETFSKLNHENPVAIQAPASALII--SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG 205 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~aip~il--~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr 205 (494)
|++.++++|.++||..|+|+|.++|+.++ .|+|+|++||||||||++|++|+++++...... ...++++|||+|||
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~--~~~~~~~lil~Ptr 156 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQYMVKAVIVAPTR 156 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STTSCCEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc--ccCCeeEEEEcCcH
Confidence 99999999999999999999999999999 679999999999999999999999999875421 22267899999999
Q ss_pred hHHHhh--------------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcc
Q 042373 206 ELVRQQ--------------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDE 241 (494)
Q Consensus 206 eLa~Qi--------------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDE 241 (494)
+||.|+ +||++|.+++.... ...++++++|||||
T Consensus 157 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~~lViDE 234 (563)
T 3i5x_A 157 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS--NKFFRFVDYKVLDE 234 (563)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH--HHHCTTCCEEEEET
T ss_pred HHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc--ccccccceEEEEeC
Confidence 999997 69999999887642 24588999999999
Q ss_pred cchhcccCChhHHHHHHHhhc-------CCCcEEEecCCCChHHHHHHHh------------------------------
Q 042373 242 ADRMFDMGFEPQITRIVQNIR-------PDRQAVLFSPTFPPRVEILARK------------------------------ 284 (494)
Q Consensus 242 aD~ml~~gf~~~i~~Il~~l~-------~~~Q~ilfSAT~~~~v~~l~~~------------------------------ 284 (494)
||+|++++|.+.+..|+..++ +.+|+++||||+++.+..++..
T Consensus 235 ah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (563)
T 3i5x_A 235 ADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVI 314 (563)
T ss_dssp HHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEE
T ss_pred HHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEE
Confidence 999999999999999988763 3679999999999887666543
Q ss_pred ---------------------------------------------------------------------------cCCcc
Q 042373 285 ---------------------------------------------------------------------------TNVCN 289 (494)
Q Consensus 285 ---------------------------------------------------------------------------~g~~~ 289 (494)
.|..+
T Consensus 315 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~ 394 (563)
T 3i5x_A 315 SEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG 394 (563)
T ss_dssp ESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSE
T ss_pred CchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCC
Confidence 68999
Q ss_pred ceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhc
Q 042373 290 LSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELS 356 (494)
Q Consensus 290 ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~ 356 (494)
|||||+++++|||+|+|++||+||+|.++..|+||+||+|| .|.|++|+++.+..+++.+.+.....
T Consensus 395 vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~ 464 (563)
T 3i5x_A 395 ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIV 464 (563)
T ss_dssp EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCC
T ss_pred EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999665 67899999999999999998876643
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=347.25 Aligned_cols=243 Identities=30% Similarity=0.445 Sum_probs=144.8
Q ss_pred CCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 115 CAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 115 ~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
...+++.+|++++|++.+++.|..+||..|+|+|.++++.++.|+|+++++|||||||++|++|++..+.... .
T Consensus 15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~------~ 88 (394)
T 1fuu_A 15 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV------K 88 (394)
T ss_dssp SSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC------C
T ss_pred hcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC------C
Confidence 4567788999999999999999999999999999999999999999999999999999999999998875422 2
Q ss_pred CCeEEEEccchhHHHhh--------------------------------------hhhhHHHHHHHhcCcceecccceEE
Q 042373 195 SPVGLVMAPTGELVRQQ--------------------------------------VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi--------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
++++||++||++|+.|+ +||++|.+.+.... ..+.++++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~ 165 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR---FRTDKIKM 165 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTS---SCCTTCCE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCC---cchhhCcE
Confidence 67999999999999997 78999988887642 45789999
Q ss_pred EEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh--------------------------------
Q 042373 237 LVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK-------------------------------- 284 (494)
Q Consensus 237 lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~-------------------------------- 284 (494)
||+||||++.+++|...+..++..+++..|++++|||+++.+..+...
T Consensus 166 vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (394)
T 1fuu_A 166 FILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEY 245 (394)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------------
T ss_pred EEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhh
Confidence 999999999999999999999999999999999999999887666543
Q ss_pred -------------------------------------------------------------cCCccceeeccccccCCCC
Q 042373 285 -------------------------------------------------------------TNVCNLSIANSVRARGLDE 303 (494)
Q Consensus 285 -------------------------------------------------------------~g~~~ILVaTdv~~rGlDi 303 (494)
.|..+|||||+++++|+|+
T Consensus 246 ~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi 325 (394)
T 1fuu_A 246 KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDV 325 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCc
Confidence 6788999999999999999
Q ss_pred CCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCcchHHHHH
Q 042373 304 KELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELVVRDDLKA 366 (494)
Q Consensus 304 ~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp~~l~~ 366 (494)
|++++||+||+|.+...|+||+||+|| .|.+++|+++.+...+..+.++++.....+|..+.+
T Consensus 326 ~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 391 (394)
T 1fuu_A 326 QQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 391 (394)
T ss_dssp ------------------------------------------------------------------
T ss_pred ccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhh
Confidence 999999999999999999999999665 678999999999999999999998888888766543
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=329.73 Aligned_cols=231 Identities=30% Similarity=0.489 Sum_probs=209.4
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
..+|++++|++.+++.|+++||..|+|+|.++|+.+++| +++++++|||||||++|++|++..+... .++++
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-------~~~~~ 77 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-------NGIEA 77 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-------SSCCE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-------CCCcE
Confidence 467999999999999999999999999999999999999 7999999999999999999999886432 26789
Q ss_pred EEEccchhHHHhh--------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEc
Q 042373 199 LVMAPTGELVRQQ--------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLD 240 (494)
Q Consensus 199 LIl~PTreLa~Qi--------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlD 240 (494)
||++||++|+.|+ +||++|.+++..+. ..+.++++||+|
T Consensus 78 lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~---~~~~~~~~iIiD 154 (367)
T 1hv8_A 78 IILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGT---LNLKNVKYFILD 154 (367)
T ss_dssp EEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTC---SCTTSCCEEEEE
T ss_pred EEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCC---cccccCCEEEEe
Confidence 9999999999997 68999988887643 468899999999
Q ss_pred ccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh------------------------------------
Q 042373 241 EADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK------------------------------------ 284 (494)
Q Consensus 241 EaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------ 284 (494)
|||++.+++|...+..++..+++..|++++|||+++.+..+...
T Consensus 155 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 234 (367)
T 1hv8_A 155 EADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKINANIEQSYVEVNENERFEALCRLL 234 (367)
T ss_dssp THHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSSSSSEEEEEECCGGGHHHHHHHHH
T ss_pred CchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCCCCceEEEEEeChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988776654
Q ss_pred ---------------------------------------------------cCCccceeeccccccCCCCCCceEEEecC
Q 042373 285 ---------------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFD 313 (494)
Q Consensus 285 ---------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd 313 (494)
.|..+|||||+++++|+|+|++++||+|+
T Consensus 235 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~ 314 (367)
T 1hv8_A 235 KNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYH 314 (367)
T ss_dssp CSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESS
T ss_pred hcCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEec
Confidence 68899999999999999999999999999
Q ss_pred CCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCcc
Q 042373 314 APNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELVV 360 (494)
Q Consensus 314 ~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~v 360 (494)
+|.+..+|+||+||+|| .|.+++|+++.+...+..|.+.++....++
T Consensus 315 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 364 (367)
T 1hv8_A 315 LPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKL 364 (367)
T ss_dssp CCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCB
T ss_pred CCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCcee
Confidence 99999999999999665 678999999999999999999888765544
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=335.09 Aligned_cols=234 Identities=26% Similarity=0.433 Sum_probs=207.8
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
.+|++++|++.++++|.++||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++..+... ..++++||
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~------~~~~~~li 81 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV------TGQVSVLV 81 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC------TTCCCEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc------CCCeeEEE
Confidence 579999999999999999999999999999999999999999999999999999999999887432 22678999
Q ss_pred EccchhHHHhh-----------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 201 MAPTGELVRQQ-----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 201 l~PTreLa~Qi-----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
++||++|+.|+ +||++|..++.... ..+.++++||+
T Consensus 82 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~---~~~~~~~~vVi 158 (391)
T 1xti_A 82 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKHFIL 158 (391)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS---SCCTTCSEEEE
T ss_pred ECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---ccccccCEEEE
Confidence 99999999996 68889888877642 46889999999
Q ss_pred cccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh----------------------------------
Q 042373 240 DEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK---------------------------------- 284 (494)
Q Consensus 240 DEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~---------------------------------- 284 (494)
||||++.+ .+|...+..++...+..+|++++|||+++.+..++..
T Consensus 159 DEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
T 1xti_A 159 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKN 238 (391)
T ss_dssp CSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHH
T ss_pred eCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHH
Confidence 99999998 4888999999999989999999999999988777664
Q ss_pred -----------------------------------------------------------cCCccceeeccccccCCCCCC
Q 042373 285 -----------------------------------------------------------TNVCNLSIANSVRARGLDEKE 305 (494)
Q Consensus 285 -----------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~ 305 (494)
.|..+|||||+++++|+|+|+
T Consensus 239 ~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 318 (391)
T 1xti_A 239 RKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIER 318 (391)
T ss_dssp HHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTT
T ss_pred HHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCccc
Confidence 688999999999999999999
Q ss_pred ceEEEecCCCCCHhHHHhhhccCCC---cceEEEEeccc-CHHHHHHHHHHHHhccCcchHH
Q 042373 306 LELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEE-NAIYATDLVKAFELSELVVRDD 363 (494)
Q Consensus 306 v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~-~~~~~~~i~~~l~~~~~~vp~~ 363 (494)
+++||+||+|.+...|+||+||+|| .|.+++|+++. +...+..+.+.+.....++|.+
T Consensus 319 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 319 VNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 9999999999999999999999665 67899999876 5577888888888777777754
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=319.14 Aligned_cols=212 Identities=32% Similarity=0.513 Sum_probs=190.2
Q ss_pred CCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH
Q 042373 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL 207 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL 207 (494)
|++.|.+.|+++||..|+|+|.++++.+++|+++++++|||||||++|++|++.. ++++||++||++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------~~~~liv~P~~~L 68 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------GMKSLVVTPTREL 68 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------------TCCEEEECSSHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------------cCCEEEEeCCHHH
Confidence 6789999999999999999999999999999999999999999999999999864 5689999999999
Q ss_pred HHhh--------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccC
Q 042373 208 VRQQ--------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG 249 (494)
Q Consensus 208 a~Qi--------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~g 249 (494)
+.|+ +||++|.+++... ...+.++++||+||||++.+++
T Consensus 69 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~---~~~~~~~~~iViDEah~~~~~~ 145 (337)
T 2z0m_A 69 TRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKG---VIDLSSFEIVIIDEADLMFEMG 145 (337)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTT---SCCGGGCSEEEEESHHHHHHTT
T ss_pred HHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcC---CcchhhCcEEEEEChHHhhccc
Confidence 9997 6899998888763 3467899999999999999999
Q ss_pred ChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh---------------------------------------------
Q 042373 250 FEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK--------------------------------------------- 284 (494)
Q Consensus 250 f~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~--------------------------------------------- 284 (494)
|...+..++..++...|++++|||+++.+......
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 225 (337)
T 2z0m_A 146 FIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDDWRSKVQALRENKDKGVIV 225 (337)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSSSHHHHHHHHTCCCSSEEE
T ss_pred cHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChHHHHHHHHHHhCCCCcEEE
Confidence 99999999999999999999999999988776654
Q ss_pred --------------------------------------cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhc
Q 042373 285 --------------------------------------TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCC 326 (494)
Q Consensus 285 --------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~G 326 (494)
.|..+|||||+++++|+|+|++++||+|++|.+...|+||+|
T Consensus 226 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~G 305 (337)
T 2z0m_A 226 FVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIG 305 (337)
T ss_dssp ECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHT
T ss_pred EEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcC
Confidence 688999999999999999999999999999999999999999
Q ss_pred cCCC---cceEEEEecccCHHHHHHHHHHHHh
Q 042373 327 QSWL---KSCAFRFISEENAIYATDLVKAFEL 355 (494)
Q Consensus 327 RaGr---~G~aitfv~~~~~~~~~~i~~~l~~ 355 (494)
|+|| .|.+++|+. .+......+.+.++.
T Consensus 306 R~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 306 RTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp TBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred ccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 9766 678999999 888888888777653
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=337.48 Aligned_cols=218 Identities=20% Similarity=0.309 Sum_probs=184.3
Q ss_pred CCCCCCcc--cCCCCHHHHHHHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCC
Q 042373 117 PKPIKTWR--QTGLTTKILETFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGD 193 (494)
Q Consensus 117 P~pi~~f~--~l~L~~~ll~~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~ 193 (494)
+.....|. ++++++.+.+.|++ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++..
T Consensus 15 ~~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~----------- 83 (591)
T 2v1x_A 15 DSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS----------- 83 (591)
T ss_dssp -CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------
T ss_pred CcchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------
Confidence 34455665 47899999999998 79999999999999999999999999999999999999999842
Q ss_pred CCCeEEEEccchhHHHhh-----------------------------------------hhhhHHH------HHHHhcCc
Q 042373 194 DSPVGLVMAPTGELVRQQ-----------------------------------------VRRGRMI------DLLCKNGV 226 (494)
Q Consensus 194 ~~p~aLIl~PTreLa~Qi-----------------------------------------~TPgrl~------dll~~~~~ 226 (494)
.+.+|||+||++|+.|+ +||++|. +.+..
T Consensus 84 -~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--- 159 (591)
T 2v1x_A 84 -DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--- 159 (591)
T ss_dssp -SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH---
T ss_pred -CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh---
Confidence 45899999999999987 5777653 23322
Q ss_pred ceecccceEEEEEcccchhcccC--ChhHHHH--HHHhhcCCCcEEEecCCCChHHHHHHHh------------------
Q 042373 227 KITNLTRVTYLVLDEADRMFDMG--FEPQITR--IVQNIRPDRQAVLFSPTFPPRVEILARK------------------ 284 (494)
Q Consensus 227 ~~~~l~~l~~lVlDEaD~ml~~g--f~~~i~~--Il~~l~~~~Q~ilfSAT~~~~v~~l~~~------------------ 284 (494)
...+.++.+|||||||++.+|| |++.+.. ++....++.|+++||||+++.+...+..
T Consensus 160 -~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~n 238 (591)
T 2v1x_A 160 -AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPN 238 (591)
T ss_dssp -HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTT
T ss_pred -hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcc
Confidence 3457799999999999999998 8888766 4555567899999999999887655443
Q ss_pred ----------------------------------------------------------------------------cCCc
Q 042373 285 ----------------------------------------------------------------------------TNVC 288 (494)
Q Consensus 285 ----------------------------------------------------------------------------~g~~ 288 (494)
.|..
T Consensus 239 l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~ 318 (591)
T 2v1x_A 239 LYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEI 318 (591)
T ss_dssp EEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSS
T ss_pred cEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 7899
Q ss_pred cceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHH
Q 042373 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLV 350 (494)
Q Consensus 289 ~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~ 350 (494)
+|||||+++++|||+|+|++|||||+|.+++.|+||+||+|| .|.|++|+++.+...+..+.
T Consensus 319 ~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 319 QVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp SEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred eEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999776 56899999988766655443
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=327.26 Aligned_cols=216 Identities=18% Similarity=0.274 Sum_probs=179.5
Q ss_pred CCCcccCCCCHHHHHHHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 120 IKTWRQTGLTTKILETFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
+.+|++++|++.+.+.|++ +||..|+|+|.++|+.+++|+|+++++|||||||++|++|++.. ...+
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~g~~ 68 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLT 68 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEE
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------------CCCE
Confidence 3679999999999999998 89999999999999999999999999999999999999999842 3579
Q ss_pred EEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 199 LVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 199 LIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
|||+|+++|+.|+ +||++|...... ..+...++.+|||
T Consensus 69 lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~---~~l~~~~~~~vVi 145 (523)
T 1oyw_A 69 VVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL---EHLAHWNPVLLAV 145 (523)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH---HHHTTSCEEEEEE
T ss_pred EEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH---HHHhhCCCCEEEE
Confidence 9999999999987 455555311100 1123478999999
Q ss_pred cccchhcccC--ChhHHHHH---HHhhcCCCcEEEecCCCChHHHH-HHHh-----------------------------
Q 042373 240 DEADRMFDMG--FEPQITRI---VQNIRPDRQAVLFSPTFPPRVEI-LARK----------------------------- 284 (494)
Q Consensus 240 DEaD~ml~~g--f~~~i~~I---l~~l~~~~Q~ilfSAT~~~~v~~-l~~~----------------------------- 284 (494)
||||++.+|| |++.+..+ ...+ +..+++++|||+++.+.. +...
T Consensus 146 DEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~ 224 (523)
T 1oyw_A 146 DEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL 224 (523)
T ss_dssp SSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECSSHH
T ss_pred eCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCCCHH
Confidence 9999999998 77776654 3333 578999999999987654 2221
Q ss_pred -----------------------------------------------------------cCCccceeeccccccCCCCCC
Q 042373 285 -----------------------------------------------------------TNVCNLSIANSVRARGLDEKE 305 (494)
Q Consensus 285 -----------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~ 305 (494)
.|..+|||||+++++|||+|+
T Consensus 225 ~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~ 304 (523)
T 1oyw_A 225 DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPN 304 (523)
T ss_dssp HHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTT
T ss_pred HHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccC
Confidence 789999999999999999999
Q ss_pred ceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHH
Q 042373 306 LELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVK 351 (494)
Q Consensus 306 v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~ 351 (494)
|++|||||+|.+++.|+||+||+|| .|.|++|+++.+...++.+..
T Consensus 305 v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp CCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 9999999999999999999999877 568999999887766655443
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=288.57 Aligned_cols=187 Identities=45% Similarity=0.743 Sum_probs=169.8
Q ss_pred HHHhhcCceeccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHH
Q 042373 102 AYRKQLDLKIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181 (494)
Q Consensus 102 ~~r~~~~i~v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~ 181 (494)
.+++..+|.+.|.+.|.|+.+|++++|++.+++.|.++||..|+|+|.++||.++.|+|++++||||||||++|++|++.
T Consensus 10 ~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~ 89 (242)
T 3fe2_A 10 TYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 89 (242)
T ss_dssp HHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHH
Confidence 68888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCeEEEEccchhHHHhh---------------------------------------hhhhHHHHHHH
Q 042373 182 HIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLC 222 (494)
Q Consensus 182 ~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~ 222 (494)
++...+.... ..++++|||+|||+|+.|+ +||++|.+++.
T Consensus 90 ~l~~~~~~~~-~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~ 168 (242)
T 3fe2_A 90 HINHQPFLER-GDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 168 (242)
T ss_dssp HHHTSCCCCT-TCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred HHHhcccccc-CCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHH
Confidence 9986543222 2378999999999999998 79999999998
Q ss_pred hcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCcccee
Q 042373 223 KNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSI 292 (494)
Q Consensus 223 ~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILV 292 (494)
.+. ..++++++||+||||+|++++|...+..|+..+++++|+++||||+|+.+..+++..-...+.|
T Consensus 169 ~~~---~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i 235 (242)
T 3fe2_A 169 CGK---TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 235 (242)
T ss_dssp HTS---CCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred cCC---CCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEE
Confidence 643 4789999999999999999999999999999999999999999999999999998754444443
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=312.57 Aligned_cols=207 Identities=22% Similarity=0.264 Sum_probs=174.3
Q ss_pred HHHHHHHh-CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHH
Q 042373 131 KILETFSK-LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVR 209 (494)
Q Consensus 131 ~ll~~l~~-~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~ 209 (494)
.+.+.+++ +|| +|||+|.++|+.++.|+|++++||||||||++|++|++..+. .++++|||+|||+|+.
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~---------~~~~~lil~Pt~~L~~ 78 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLVK 78 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT---------TTCCEEEEESSHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc---------CCCEEEEEECCHHHHH
Confidence 34445554 566 899999999999999999999999999999999999988762 1789999999999999
Q ss_pred hh------------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccch---
Q 042373 210 QQ------------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADR--- 244 (494)
Q Consensus 210 Qi------------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~--- 244 (494)
|+ +||++|.+++.. ..+.++++||+||||+
T Consensus 79 q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-----~~~~~~~~iViDEaH~~~~ 153 (414)
T 3oiy_A 79 QTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLK 153 (414)
T ss_dssp HHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-----HTTCCCSEEEESCHHHHHH
T ss_pred HHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-----hccccccEEEEeChHhhhh
Confidence 87 677887776653 4577999999999965
Q ss_pred -------hcc-cCChhH-HHHHHHhhc-----------CCCcEEEecCC-CChHHH-HHHHh------------------
Q 042373 245 -------MFD-MGFEPQ-ITRIVQNIR-----------PDRQAVLFSPT-FPPRVE-ILARK------------------ 284 (494)
Q Consensus 245 -------ml~-~gf~~~-i~~Il~~l~-----------~~~Q~ilfSAT-~~~~v~-~l~~~------------------ 284 (494)
|++ +||.+. +..++..++ +.+|+++|||| +|..+. .+...
T Consensus 154 ~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 233 (414)
T 3oiy_A 154 ASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITH 233 (414)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSCCCCCCCSEEE
T ss_pred ccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCccccccccchh
Confidence 455 899998 899999887 88999999999 665433 11111
Q ss_pred -------------------------------------------------------------cCCccceee----cccccc
Q 042373 285 -------------------------------------------------------------TNVCNLSIA----NSVRAR 299 (494)
Q Consensus 285 -------------------------------------------------------------~g~~~ILVa----Tdv~~r 299 (494)
.|.++|||| |++++|
T Consensus 234 ~~~~~~~~~~l~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~r~~~~f~~g~~~vLvat~s~T~~~~~ 313 (414)
T 3oiy_A 234 VRISSRSKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKNFEDFKVGKINILIGVQAYYGKLTR 313 (414)
T ss_dssp EEESSCCHHHHHHHHHHHCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCHHHHHHHHHTTSCSEEEEECCTTCCCCC
T ss_pred eeeccCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCcchHHHHHhCCCCeEEEEecCcCchhhc
Confidence 268899999 999999
Q ss_pred CCCCCC-ceEEEecCCC--CCHhHHHhhhccCCC-------cceEEEEecccCHHHHHHHHHHHH
Q 042373 300 GLDEKE-LELVINFDAP--NDYEDYVHHCCQSWL-------KSCAFRFISEENAIYATDLVKAFE 354 (494)
Q Consensus 300 GlDi~~-v~~VInyd~P--~s~~~yvhR~GRaGr-------~G~aitfv~~~~~~~~~~i~~~l~ 354 (494)
|||+|+ |++|||||+| .+...|+||+||+|| .|.+++|+ .+...+..+.+.++
T Consensus 314 GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 314 GVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp CCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred cCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999999 9999999999 999999999999777 57888888 67788888888887
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=342.78 Aligned_cols=145 Identities=15% Similarity=0.148 Sum_probs=131.8
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
...|..+++++.+...+...++..|+|+|.++|+.++.|+|+|++|+||||||++|++|++..+.. +.++|
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---------g~rvl 231 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVI 231 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---------TCEEE
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---------CCeEE
Confidence 457888888888877777777778999999999999999999999999999999999999999853 67999
Q ss_pred EEccchhHHHhh----------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCCh
Q 042373 200 VMAPTGELVRQQ----------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFE 251 (494)
Q Consensus 200 Il~PTreLa~Qi----------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~ 251 (494)
|++|||+|+.|+ +||++|.+++..+. ..++++.+|||||||+|.+++|.
T Consensus 232 vl~PtraLa~Q~~~~l~~~~~~VglltGd~~~~~~~~IlV~Tpe~L~~~L~~~~---~~l~~l~lVVIDEaH~l~d~~rg 308 (1108)
T 3l9o_A 232 YTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGS---EVMREVAWVIFDEVHYMRDKERG 308 (1108)
T ss_dssp EEESSHHHHHHHHHHHHHHTSSEEEECSSCBCCCSCSEEEEEHHHHHHHHHHCS---SHHHHEEEEEEETGGGTTSHHHH
T ss_pred EEcCcHHHHHHHHHHHHHHhCCccEEeCccccCCCCCEEEeChHHHHHHHHcCc---cccccCCEEEEhhhhhccccchH
Confidence 999999999998 79999999998753 35889999999999999999999
Q ss_pred hHHHHHHHhhcCCCcEEEecCCCCh
Q 042373 252 PQITRIVQNIRPDRQAVLFSPTFPP 276 (494)
Q Consensus 252 ~~i~~Il~~l~~~~Q~ilfSAT~~~ 276 (494)
..+..++..+++.+|+++||||+|+
T Consensus 309 ~~~e~ii~~l~~~~qvl~lSATipn 333 (1108)
T 3l9o_A 309 VVWEETIILLPDKVRYVFLSATIPN 333 (1108)
T ss_dssp HHHHHHHHHSCTTSEEEEEECSCSS
T ss_pred HHHHHHHHhcCCCceEEEEcCCCCC
Confidence 9999999999999999999999865
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-37 Score=336.71 Aligned_cols=227 Identities=13% Similarity=0.139 Sum_probs=181.1
Q ss_pred CCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch
Q 042373 126 TGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG 205 (494)
Q Consensus 126 l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr 205 (494)
+++++.++++|... +..|+|+|++++|.++.|+|+|++|+||||||++|++|+++.+... ++++|||+|||
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--------~~~vLvl~Ptr 225 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--------RLRTLILAPTR 225 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--------TCCEEEEESSH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--------CCeEEEEcChH
Confidence 56777777666554 5899999999999999999999999999999999999999998752 67999999999
Q ss_pred hHHHhh-------------------hhhhHHHHHHHhcCc-----ceecccceEEEEEcccchhcccCChhHHHHHHHhh
Q 042373 206 ELVRQQ-------------------VRRGRMIDLLCKNGV-----KITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI 261 (494)
Q Consensus 206 eLa~Qi-------------------~TPgrl~dll~~~~~-----~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l 261 (494)
+||.|+ +||+++++++..+.. ....++++++|||||||+| +++|...+..|+..+
T Consensus 226 eLa~Qi~~~l~~~~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l 304 (618)
T 2whx_A 226 VVAAEMEEALRGLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRV 304 (618)
T ss_dssp HHHHHHHHHTTTSCEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHh
Confidence 999998 355554433221100 0123789999999999998 788999999999888
Q ss_pred c-CCCcEEEecCCCChHHHHHHHh--------------------------------------------------------
Q 042373 262 R-PDRQAVLFSPTFPPRVEILARK-------------------------------------------------------- 284 (494)
Q Consensus 262 ~-~~~Q~ilfSAT~~~~v~~l~~~-------------------------------------------------------- 284 (494)
+ +++|+++||||++..+..++..
T Consensus 305 ~~~~~q~il~SAT~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~l~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~ 384 (618)
T 2whx_A 305 EMGEAAAIFMTATPPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQ 384 (618)
T ss_dssp HHTSCEEEEECSSCTTCCCSSCCCSSCEEEEECCCCSSCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred cccCccEEEEECCCchhhhhhhccCCceeeecccCCHHHHHHHHHHHHhCCCCEEEEECChhHHHHHHHHHHHcCCcEEE
Confidence 5 7899999999987654433221
Q ss_pred --------------cCCccceeeccccccCCCCCCceEE--------------------EecCCCCCHhHHHhhhccCCC
Q 042373 285 --------------TNVCNLSIANSVRARGLDEKELELV--------------------INFDAPNDYEDYVHHCCQSWL 330 (494)
Q Consensus 285 --------------~g~~~ILVaTdv~~rGlDi~~v~~V--------------------Inyd~P~s~~~yvhR~GRaGr 330 (494)
.|+.+|||||++++||||++ |++| ||||+|.+.++|+||+||+||
T Consensus 385 lhg~~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR 463 (618)
T 2whx_A 385 LSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGR 463 (618)
T ss_dssp ECTTTHHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred EChHHHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCC
Confidence 78999999999999999997 8887 888899999999999999766
Q ss_pred ----cceEEEEec---ccCHHHHHHHHHHHHhccCcchHH
Q 042373 331 ----KSCAFRFIS---EENAIYATDLVKAFELSELVVRDD 363 (494)
Q Consensus 331 ----~G~aitfv~---~~~~~~~~~i~~~l~~~~~~vp~~ 363 (494)
.|.||+|++ +.+...+..+++.+......+|..
T Consensus 464 ~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~~ 503 (618)
T 2whx_A 464 NPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEG 503 (618)
T ss_dssp CTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTC
T ss_pred CCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCcc
Confidence 568999998 788888899998887777777653
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=285.19 Aligned_cols=177 Identities=29% Similarity=0.411 Sum_probs=156.2
Q ss_pred CceeccCCCCCC---CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHH
Q 042373 108 DLKIREKCAPKP---IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRH 182 (494)
Q Consensus 108 ~i~v~g~~~P~p---i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~ 182 (494)
.+.+.+.+.+.| +.+|++++|++.++++|..+||..|||+|.++||.++.| +|+|++||||||||++|++|++++
T Consensus 76 ~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~ 155 (300)
T 3fmo_B 76 QVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ 155 (300)
T ss_dssp CEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHh
Confidence 466777666655 688999999999999999999999999999999999998 999999999999999999999998
Q ss_pred HHcCCCCCCCCCCCeEEEEccchhHHHhh-------------------------------------hhhhHHHHHHHhcC
Q 042373 183 IWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------------------------------------VRRGRMIDLLCKNG 225 (494)
Q Consensus 183 l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------------------------------------~TPgrl~dll~~~~ 225 (494)
+.... .+|++|||+|||+||.|+ +||++|.+++.+.
T Consensus 156 l~~~~------~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~- 228 (300)
T 3fmo_B 156 VEPAN------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL- 228 (300)
T ss_dssp CCTTS------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTT-
T ss_pred hhccC------CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhc-
Confidence 75432 278999999999999997 7999999999753
Q ss_pred cceecccceEEEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCcccee
Q 042373 226 VKITNLTRVTYLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSI 292 (494)
Q Consensus 226 ~~~~~l~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILV 292 (494)
+.++++++++|||||||+|++ ++|...+..|+..+++.+|+++||||++..+..+++..-...+.|
T Consensus 229 -~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i 295 (300)
T 3fmo_B 229 -KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI 295 (300)
T ss_dssp -CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEE
T ss_pred -CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEE
Confidence 346789999999999999998 799999999999999999999999999999999998744434433
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-34 Score=317.31 Aligned_cols=171 Identities=19% Similarity=0.277 Sum_probs=130.3
Q ss_pred hcccccccccccchhhhhcCH-HHH---hhcCcee-ccCCCCCCCCCcccCCCCHHHHHHHH--------hCCCCCCChh
Q 042373 81 DYQQLRKNFYTQAREITRMSP-AYR---KQLDLKI-REKCAPKPIKTWRQTGLTTKILETFS--------KLNHENPVAI 147 (494)
Q Consensus 81 ~~~~~~k~~~~~~~~~~~~s~-~~r---~~~~i~v-~g~~~P~pi~~f~~l~L~~~ll~~l~--------~~g~~~ptpi 147 (494)
.|.++-+.++...+.+..+|. +++ .++...+ .|. + |++.+.+++. .+|| .|||+
T Consensus 21 ~~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~-------~-----ld~~l~ea~a~vrea~~r~lG~-~pt~V 87 (844)
T 1tf5_A 21 RYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGA-------T-----TDDLLVEAFAVVREASRRVTGM-FPFKV 87 (844)
T ss_dssp HHHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTC-------C-----HHHHHHHHHHHHHHHHHHHHSC-CCCHH
T ss_pred HHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCC-------C-----hHHHHHHHHHHHHHHHHHHcCC-CCcHH
Confidence 466666777777777777777 332 2222222 232 1 2222333332 5899 99999
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----------------
Q 042373 148 QAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---------------- 211 (494)
Q Consensus 148 Q~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---------------- 211 (494)
|..++|.++.|+ |+.++||+|||++|+||++.+.+. ++.++||+|||+||.|+
T Consensus 88 Q~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---------g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~ 156 (844)
T 1tf5_A 88 QLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---------GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVG 156 (844)
T ss_dssp HHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 999999999999 999999999999999999965432 66899999999999997
Q ss_pred ---------------------hhhhHH-HHHHHhcC---cceecccceEEEEEcccchhc-ccC---------------C
Q 042373 212 ---------------------VRRGRM-IDLLCKNG---VKITNLTRVTYLVLDEADRMF-DMG---------------F 250 (494)
Q Consensus 212 ---------------------~TPgrl-~dll~~~~---~~~~~l~~l~~lVlDEaD~ml-~~g---------------f 250 (494)
+||+|| .|+|..+- ...+.++.+.|+||||||+|| |++ |
T Consensus 157 ~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~ 236 (844)
T 1tf5_A 157 LNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKL 236 (844)
T ss_dssp ECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHH
T ss_pred EEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhH
Confidence 799999 77776531 123568999999999999998 775 6
Q ss_pred hhHHHHHHHhhc---------CCCcEE-----------------EecCCCC
Q 042373 251 EPQITRIVQNIR---------PDRQAV-----------------LFSPTFP 275 (494)
Q Consensus 251 ~~~i~~Il~~l~---------~~~Q~i-----------------lfSAT~~ 275 (494)
..++..|+..++ +.+|++ +||||++
T Consensus 237 ~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~ 287 (844)
T 1tf5_A 237 YVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHV 287 (844)
T ss_dssp HHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGH
T ss_pred HHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccc
Confidence 688999999997 478888 9999965
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=311.42 Aligned_cols=209 Identities=17% Similarity=0.175 Sum_probs=185.5
Q ss_pred CcccCCCCHHHHHHHHhCCCCCCChhHHHHHHH-HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASAL-IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 122 ~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~-il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
+|++++|++.+.+.+++.||..|+|+|.++++. ++.|++++++||||||||++|.+|+++.+... +.++||
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--------~~~~l~ 73 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--------GGKAVY 73 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--------CSEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--------CCEEEE
Confidence 699999999999999999999999999999998 89999999999999999999999999988742 578999
Q ss_pred EccchhHHHhh-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchh
Q 042373 201 MAPTGELVRQQ-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRM 245 (494)
Q Consensus 201 l~PTreLa~Qi-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~m 245 (494)
++|+|+||.|+ +||+++..++... ...++++++||+||||++
T Consensus 74 i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~---~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 74 IVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHG---SSWIKDVKILVADEIHLI 150 (720)
T ss_dssp ECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHT---CTTGGGEEEEEEETGGGG
T ss_pred EcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcC---hhhhhcCCEEEEECCccc
Confidence 99999999997 7999998888763 234889999999999999
Q ss_pred cccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------------
Q 042373 246 FDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------------- 284 (494)
Q Consensus 246 l~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------------- 284 (494)
.++++...+..++..++...|+|++|||+++. ..++..
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~~l~~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEEL 229 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHHHTTEEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHH
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHHHhCCcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHH
Confidence 99899999999999998889999999998531 111100
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 230 ~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R 309 (720)
T 2zj8_A 230 VYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDER 309 (720)
T ss_dssp HHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred HHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHH
Confidence
Q ss_pred --------cCCccceeeccccccCCCCCCceEEEe----cC----CCCCHhHHHhhhccCCC-----cceEEEEecccC
Q 042373 285 --------TNVCNLSIANSVRARGLDEKELELVIN----FD----APNDYEDYVHHCCQSWL-----KSCAFRFISEEN 342 (494)
Q Consensus 285 --------~g~~~ILVaTdv~~rGlDi~~v~~VIn----yd----~P~s~~~yvhR~GRaGr-----~G~aitfv~~~~ 342 (494)
.|.++|||||+++++|+|+|++++||+ || .|.+..+|+||+||+|| .|.||.|+++.+
T Consensus 310 ~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 310 VLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp HHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred HHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 578899999999999999999999999 87 68999999999999998 467999998877
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=269.02 Aligned_cols=178 Identities=37% Similarity=0.591 Sum_probs=154.4
Q ss_pred ccCCCCCCCCCccc-CCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCC
Q 042373 112 REKCAPKPIKTWRQ-TGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVV 190 (494)
Q Consensus 112 ~g~~~P~pi~~f~~-l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~ 190 (494)
.+...|.|+.+|.+ +++++.++++|.++||.+|+|+|.++|+.+++|+|++++||||||||++|++|++.++.......
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 35678999999999 89999999999999999999999999999999999999999999999999999999986543222
Q ss_pred CCCCCCeEEEEccchhHHHhh--------------------------------------hhhhHHHHHHHhcCcceeccc
Q 042373 191 PGDDSPVGLVMAPTGELVRQQ--------------------------------------VRRGRMIDLLCKNGVKITNLT 232 (494)
Q Consensus 191 ~~~~~p~aLIl~PTreLa~Qi--------------------------------------~TPgrl~dll~~~~~~~~~l~ 232 (494)
....++++||++|||+|+.|+ +||+++.+++... ...++
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~---~~~~~ 166 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNN---SVNLR 166 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTT---CCCCT
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC---CcCcc
Confidence 223478999999999999997 7999999988764 34688
Q ss_pred ceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCcccee
Q 042373 233 RVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSI 292 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILV 292 (494)
++++||+||||+|++++|...+..++..+++++|+++||||+|+.+..+++..-...+.|
T Consensus 167 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 226 (228)
T 3iuy_A 167 SITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIV 226 (228)
T ss_dssp TCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEE
T ss_pred cceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEE
Confidence 999999999999999999999999999999999999999999999999987644444433
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=326.04 Aligned_cols=202 Identities=22% Similarity=0.244 Sum_probs=171.8
Q ss_pred hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------
Q 042373 138 KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------ 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------ 211 (494)
.+|| +|||+|.++||.++.|+|++++||||||||++|++|++..+. .++++|||+|||+||.|+
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---------~~~~~Lil~PtreLa~Q~~~~l~~ 143 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLVKQTLERLQK 143 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---------TTCCEEEEESSHHHHHHHHHHHHT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---------cCCeEEEEechHHHHHHHHHHHHH
Confidence 4788 699999999999999999999999999999999988888762 178999999999999997
Q ss_pred ------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccc----------hh
Q 042373 212 ------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEAD----------RM 245 (494)
Q Consensus 212 ------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD----------~m 245 (494)
+||++|.+++.. +.++++++||||||| +|
T Consensus 144 l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-----l~~~~l~~lViDEaH~l~~~~r~~Dr~ 218 (1104)
T 4ddu_A 144 LADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKASRNIDTL 218 (1104)
T ss_dssp TSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-----HHTSCCSEEEESCHHHHTTSSHHHHHH
T ss_pred hhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-----hcccCcCEEEEeCCCccccccccchhh
Confidence 688888887763 467899999999995 56
Q ss_pred cc-cCChhH-HHHHHHhhc-----------CCCcEEEecCC-CChHHHHH-HHh--------------------------
Q 042373 246 FD-MGFEPQ-ITRIVQNIR-----------PDRQAVLFSPT-FPPRVEIL-ARK-------------------------- 284 (494)
Q Consensus 246 l~-~gf~~~-i~~Il~~l~-----------~~~Q~ilfSAT-~~~~v~~l-~~~-------------------------- 284 (494)
++ +||.++ +..++..++ .++|+++|||| +|..+... .+.
T Consensus 219 L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~~~~~~~i~~~~~~~~k~ 298 (1104)
T 4ddu_A 219 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSK 298 (1104)
T ss_dssp HHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBCCCCCCCEEEEEESCCCH
T ss_pred hHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccCCCCcCCceeEEEecCHH
Confidence 66 999999 899999988 88999999999 56544321 111
Q ss_pred -----------------------------------------------------cCCccceee----ccccccCCCCCC-c
Q 042373 285 -----------------------------------------------------TNVCNLSIA----NSVRARGLDEKE-L 306 (494)
Q Consensus 285 -----------------------------------------------------~g~~~ILVa----Tdv~~rGlDi~~-v 306 (494)
.|+++|||| |++++||||+|+ |
T Consensus 299 ~~L~~ll~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~rr~l~~F~~G~~~VLVatas~TdvlarGIDip~~V 378 (1104)
T 4ddu_A 299 EKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKNFEDFKVGKINILIGVQAYYGKLTRGVDLPERI 378 (1104)
T ss_dssp HHHHHHHHHHCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSHHHHHHHHHHTSCSEEEEETTTHHHHCCSCCCTTTC
T ss_pred HHHHHHHHhcCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCcHHHHHHHHCCCCCEEEEecCCCCeeEecCcCCCCC
Confidence 367899999 999999999999 9
Q ss_pred eEEEecCCCC----------------------------------------------------------------------
Q 042373 307 ELVINFDAPN---------------------------------------------------------------------- 316 (494)
Q Consensus 307 ~~VInyd~P~---------------------------------------------------------------------- 316 (494)
++|||||+|.
T Consensus 379 ~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~ 458 (1104)
T 4ddu_A 379 KYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELI 458 (1104)
T ss_dssp CEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEE
T ss_pred CEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEE
Confidence 9999999998
Q ss_pred --CHhHHHhhhccCCCcc-----eEEEEecccCHHHHHHHHHHHH
Q 042373 317 --DYEDYVHHCCQSWLKS-----CAFRFISEENAIYATDLVKAFE 354 (494)
Q Consensus 317 --s~~~yvhR~GRaGr~G-----~aitfv~~~~~~~~~~i~~~l~ 354 (494)
+..+|+||+||+||-| .+++++..++...++.|.+.++
T Consensus 459 ~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 459 IPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp EECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred ecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7889999999988821 3555555588889999998886
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=267.52 Aligned_cols=185 Identities=29% Similarity=0.466 Sum_probs=162.8
Q ss_pred HHHhhcCceeccCCCCCCCCCcccC----CCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHH
Q 042373 102 AYRKQLDLKIREKCAPKPIKTWRQT----GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLL 177 (494)
Q Consensus 102 ~~r~~~~i~v~g~~~P~pi~~f~~l----~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafll 177 (494)
.+|++..+.+.|.+.|.|+.+|+++ +|++.+++.|.++||..|+|+|.++|+.+++|+|++++||||||||++|++
T Consensus 6 ~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l 85 (245)
T 3dkp_A 6 FLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 85 (245)
T ss_dssp HHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred HHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHH
Confidence 6788889999999999999999987 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----------------------------------------hhhhHH
Q 042373 178 PMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------------------------------------VRRGRM 217 (494)
Q Consensus 178 pil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------------------------------------~TPgrl 217 (494)
|++.++... ...++++||++|||+|+.|+ +||++|
T Consensus 86 ~~l~~l~~~-----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l 160 (245)
T 3dkp_A 86 PILMQLKQP-----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRL 160 (245)
T ss_dssp HHHHHHCSC-----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHH
T ss_pred HHHHHHhhc-----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHH
Confidence 999998542 12377999999999999998 799999
Q ss_pred HHHHHhcCcceecccceEEEEEcccchhcc---cCChhHHHHHHHhhc-CCCcEEEecCCCChHHHHHHHhcCCcccee
Q 042373 218 IDLLCKNGVKITNLTRVTYLVLDEADRMFD---MGFEPQITRIVQNIR-PDRQAVLFSPTFPPRVEILARKTNVCNLSI 292 (494)
Q Consensus 218 ~dll~~~~~~~~~l~~l~~lVlDEaD~ml~---~gf~~~i~~Il~~l~-~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILV 292 (494)
.+++.... ....++++++||+||||+|++ .+|...+..++..+. +..|+++||||+|+.+..+++..-...+.|
T Consensus 161 ~~~l~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i 238 (245)
T 3dkp_A 161 IYLLKQDP-PGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISV 238 (245)
T ss_dssp HHHHHSSS-CSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEE
T ss_pred HHHHHhCC-CCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEE
Confidence 99997643 235789999999999999998 578899999987764 578999999999999999988754444444
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=294.52 Aligned_cols=130 Identities=18% Similarity=0.219 Sum_probs=102.6
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
++..+|+|+|.++|+.++.|+|+|+++|||||||++|++|+++.+...+. ..++++|||+||++|+.|+
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc----cCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999876432 1267899999999999997
Q ss_pred --------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHH-HHH
Q 042373 212 --------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQIT-RIV 258 (494)
Q Consensus 212 --------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~-~Il 258 (494)
+||++|.+++..+. ...+.++++|||||||++.++++...+. .++
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~ 156 (556)
T 4a2p_A 79 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 156 (556)
T ss_dssp HGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS--CCCSTTCSEEEEETGGGCSTTSHHHHHHHHHH
T ss_pred hcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc--ccccccCCEEEEECCcccCCcchHHHHHHHHH
Confidence 79999999987642 2268899999999999999887544432 222
Q ss_pred Hh-h---cCCCcEEEecCCC
Q 042373 259 QN-I---RPDRQAVLFSPTF 274 (494)
Q Consensus 259 ~~-l---~~~~Q~ilfSAT~ 274 (494)
.. + .+..|+++||||+
T Consensus 157 ~~~~~~~~~~~~~l~lSAT~ 176 (556)
T 4a2p_A 157 EQKFNSASQLPQILGLTASV 176 (556)
T ss_dssp HHHHCC---CCEEEEEESCC
T ss_pred HhhhcccCCCCeEEEEeCCc
Confidence 22 2 3568999999998
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=304.81 Aligned_cols=211 Identities=16% Similarity=0.211 Sum_probs=180.2
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHH-HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASAL-IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~-il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
..+|++++|++.+.+.+++.||..|+|+|.++++. ++.|++++++||||||||++|.+|+++.+... +.++
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--------~~~i 78 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--------GGKA 78 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--------CSEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--------CCeE
Confidence 46799999999999999999999999999999999 88999999999999999999999999988643 5689
Q ss_pred EEEccchhHHHhh-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccc
Q 042373 199 LVMAPTGELVRQQ-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEAD 243 (494)
Q Consensus 199 LIl~PTreLa~Qi-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD 243 (494)
||++|+|+||.|+ +||+++..++.... ..++++++||+||||
T Consensus 79 l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~---~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 79 IYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRP---EWLNEVNYFVLDELH 155 (715)
T ss_dssp EEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCC---GGGGGEEEEEECSGG
T ss_pred EEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCCh---hHhhccCEEEEechh
Confidence 9999999999997 79999998887632 348899999999999
Q ss_pred hhcccCChhHHHHHHHhhcCCCcEEEecCCCChH----------------------------------------------
Q 042373 244 RMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPR---------------------------------------------- 277 (494)
Q Consensus 244 ~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~---------------------------------------------- 277 (494)
++.+.++...++.++..++ +.|+|++|||+++.
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISNYKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKK 234 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTHHHHHHHHTCEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEE
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCHHHHHHHhCCCccCCCCCCCCceEEEEecCCcccceeeecCcchhhh
Confidence 9998889999999998887 89999999998620
Q ss_pred ------HHHHHH-------------------------------------------------------------------h
Q 042373 278 ------VEILAR-------------------------------------------------------------------K 284 (494)
Q Consensus 278 ------v~~l~~-------------------------------------------------------------------~ 284 (494)
...+.. .
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~ 314 (715)
T 2va8_A 235 VHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKG 314 (715)
T ss_dssp EESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTT
T ss_pred cccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcC
Confidence 000000 0
Q ss_pred ---------------------cCCccceeeccccccCCCCCCceEEEe----cC-------CCCCHhHHHhhhccCCC--
Q 042373 285 ---------------------TNVCNLSIANSVRARGLDEKELELVIN----FD-------APNDYEDYVHHCCQSWL-- 330 (494)
Q Consensus 285 ---------------------~g~~~ILVaTdv~~rGlDi~~v~~VIn----yd-------~P~s~~~yvhR~GRaGr-- 330 (494)
.|..+|||||+++++|||+|++++||+ || .|.+..+|+||+||+||
T Consensus 315 v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g 394 (715)
T 2va8_A 315 VAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPG 394 (715)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTT
T ss_pred EEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCC
Confidence 478899999999999999999999999 99 89999999999999998
Q ss_pred ---cceEEEEecccC
Q 042373 331 ---KSCAFRFISEEN 342 (494)
Q Consensus 331 ---~G~aitfv~~~~ 342 (494)
.|.||.|+++.+
T Consensus 395 ~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 395 FDQIGESIVVVRDKE 409 (715)
T ss_dssp TCSCEEEEEECSCGG
T ss_pred CCCCceEEEEeCCch
Confidence 467999988765
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-33 Score=307.89 Aligned_cols=209 Identities=16% Similarity=0.203 Sum_probs=180.1
Q ss_pred CcccCC--CCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 122 TWRQTG--LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 122 ~f~~l~--L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
+|++++ |++.+.+.++++||..|+|+|.++++.++.|+|++++||||||||++|.+|+++.+.. +.++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~l 72 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGKSL 72 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCCEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCcEE
Confidence 688888 9999999999999999999999999999999999999999999999999999998763 56899
Q ss_pred EEccchhHHHhh-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccch
Q 042373 200 VMAPTGELVRQQ-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADR 244 (494)
Q Consensus 200 Il~PTreLa~Qi-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ 244 (494)
|++|+|+||.|+ +||+++..++.... ..++++++||+||||+
T Consensus 73 ~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~---~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 73 YVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRA---SWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTC---SGGGGCCEEEETTGGG
T ss_pred EEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcCh---hHHhhcCEEEEeeeee
Confidence 999999999997 79999988887632 3488999999999999
Q ss_pred hcccCChhHHHHHHHhh---cCCCcEEEecCCCChHHHHHHH--------------------------------------
Q 042373 245 MFDMGFEPQITRIVQNI---RPDRQAVLFSPTFPPRVEILAR-------------------------------------- 283 (494)
Q Consensus 245 ml~~gf~~~i~~Il~~l---~~~~Q~ilfSAT~~~~v~~l~~-------------------------------------- 283 (494)
+.++++...+..++..+ +++.|+|++|||+++. ..++.
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~-~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 228 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNV-TEIAEWLDADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRR 228 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTTH-HHHHHHTTCEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCCH-HHHHHHhCCCcccCCCCCccceEEEeeCCeeeccCcchhhhhh
Confidence 99988888888887766 5789999999998720 00000
Q ss_pred ---------------------------------------------------------------------h----------
Q 042373 284 ---------------------------------------------------------------------K---------- 284 (494)
Q Consensus 284 ---------------------------------------------------------------------~---------- 284 (494)
.
T Consensus 229 ~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 308 (702)
T 2p6r_A 229 VKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLN 308 (702)
T ss_dssp CCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCH
T ss_pred hhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCH
Confidence 0
Q ss_pred -----------cCCccceeeccccccCCCCCCceEEEe----cC---CCCCHhHHHhhhccCCC-----cceEEEEeccc
Q 042373 285 -----------TNVCNLSIANSVRARGLDEKELELVIN----FD---APNDYEDYVHHCCQSWL-----KSCAFRFISEE 341 (494)
Q Consensus 285 -----------~g~~~ILVaTdv~~rGlDi~~v~~VIn----yd---~P~s~~~yvhR~GRaGr-----~G~aitfv~~~ 341 (494)
.|..+|||||+++++|||+|++++||+ || .|.+..+|+||+||+|| .|.||.|+++.
T Consensus 309 ~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 388 (702)
T 2p6r_A 309 GQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKR 388 (702)
T ss_dssp HHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGG
T ss_pred HHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCc
Confidence 578899999999999999999999999 77 78999999999999988 46799998877
Q ss_pred CH
Q 042373 342 NA 343 (494)
Q Consensus 342 ~~ 343 (494)
+.
T Consensus 389 ~~ 390 (702)
T 2p6r_A 389 DR 390 (702)
T ss_dssp GH
T ss_pred cH
Confidence 63
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=303.68 Aligned_cols=210 Identities=14% Similarity=0.106 Sum_probs=162.0
Q ss_pred CCCCCChhHHHHHHHHHcCCCE-EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 140 NHENPVAIQAPASALIISGLDS-VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 140 g~~~ptpiQ~~aip~il~grdv-i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
|+..|+|+|+ +||.+++|+|+ +++||||||||++|++|++.++... ++++||++|||+||.|+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--------~~~~lvl~Ptr~La~Q~~~~l~g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--------RLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--------TCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--------CCcEEEECCCHHHHHHHHHHhcCc
Confidence 7899999986 79999999988 8889999999999999999887653 67999999999999998
Q ss_pred ---------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHh-hcCCCcEEE
Q 042373 212 ---------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQN-IRPDRQAVL 269 (494)
Q Consensus 212 ---------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~-l~~~~Q~il 269 (494)
+|++.+...+... ..++++++||+||||++ +.++...+..+... .++++|+++
T Consensus 72 ~v~~~~~~~~~~~~~~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~ 146 (451)
T 2jlq_A 72 PIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIF 146 (451)
T ss_dssp CEEECCTTCSCCCCSSCCEEEEEHHHHHHHHHHC----SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred eeeeeeccccccCCCCceEEEEChHHHHHHhhCc----ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEE
Confidence 5677777766542 35889999999999987 55444444444333 356899999
Q ss_pred ecCCCChHHHHHHHh-----------------------------------------------------------------
Q 042373 270 FSPTFPPRVEILARK----------------------------------------------------------------- 284 (494)
Q Consensus 270 fSAT~~~~v~~l~~~----------------------------------------------------------------- 284 (494)
||||++..+..+...
T Consensus 147 ~SAT~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~~ 226 (451)
T 2jlq_A 147 MTATPPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTE 226 (451)
T ss_dssp ECSSCTTCCCSSCCCSSCEEEEECCCCSSCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHH
T ss_pred EccCCCccchhhhcCCCceEecCccCCchhhHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHHHHH
Confidence 999987543221110
Q ss_pred -----cCCccceeeccccccCCCCCCceEEEecC--------------------CCCCHhHHHhhhccCCCc----ceEE
Q 042373 285 -----TNVCNLSIANSVRARGLDEKELELVINFD--------------------APNDYEDYVHHCCQSWLK----SCAF 335 (494)
Q Consensus 285 -----~g~~~ILVaTdv~~rGlDi~~v~~VInyd--------------------~P~s~~~yvhR~GRaGr~----G~ai 335 (494)
.|+.+|||||++++||||+|+ ++||||| +|.+..+|+||+||+||. |.++
T Consensus 227 ~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~ 305 (451)
T 2jlq_A 227 YPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQY 305 (451)
T ss_dssp GGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEE
T ss_pred HHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEE
Confidence 789999999999999999999 9999999 999999999999998774 4677
Q ss_pred EEecccC---HHHHHHHHHHHHhccCcchHHH
Q 042373 336 RFISEEN---AIYATDLVKAFELSELVVRDDL 364 (494)
Q Consensus 336 tfv~~~~---~~~~~~i~~~l~~~~~~vp~~l 364 (494)
.|+...+ ......+...+...+..+|.++
T Consensus 306 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (451)
T 2jlq_A 306 VFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 337 (451)
T ss_dssp EECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred EEeCCchhhcchhHHHHHHHHHHhcCCChhHh
Confidence 7764331 1222222344445566666543
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.4e-32 Score=289.87 Aligned_cols=127 Identities=20% Similarity=0.201 Sum_probs=104.0
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----------
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------- 211 (494)
+|+|+|.++|+.++.|+|+|+++|||||||++|++|+++.+...+. ..++++|||+||++|+.|+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC----GQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----CCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 7999999999999999999999999999999999999999876532 2267899999999999997
Q ss_pred ----------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCCh-hHHHHHHHhh-
Q 042373 212 ----------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFE-PQITRIVQNI- 261 (494)
Q Consensus 212 ----------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~-~~i~~Il~~l- 261 (494)
+||++|.+++..+. ...+.++++|||||||++...+.. ..+..++...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 157 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA--IPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKL 157 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS--SCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc--ccccccCCEEEEECccccCCcchHHHHHHHHHHhhh
Confidence 79999999987643 226889999999999999987532 2232333332
Q ss_pred ----cCCCcEEEecCCCC
Q 042373 262 ----RPDRQAVLFSPTFP 275 (494)
Q Consensus 262 ----~~~~Q~ilfSAT~~ 275 (494)
.+..|+++||||++
T Consensus 158 ~~~~~~~~~~l~lSAT~~ 175 (555)
T 3tbk_A 158 GESRDPLPQVVGLTASVG 175 (555)
T ss_dssp SSCCSCCCEEEEEESCCC
T ss_pred ccccCCCCeEEEEecCcc
Confidence 25679999999983
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-32 Score=316.16 Aligned_cols=213 Identities=19% Similarity=0.233 Sum_probs=172.3
Q ss_pred CcccCCCCHHHH-----HHHH-hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCC
Q 042373 122 TWRQTGLTTKIL-----ETFS-KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDS 195 (494)
Q Consensus 122 ~f~~l~L~~~ll-----~~l~-~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~ 195 (494)
.|..+++++.+. +.+. .+||. | |+|.++||.++.|+|+|++||||||||+ |++|++.++... +
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~--------~ 99 (1054)
T 1gku_B 31 AASLCLFPEDFLLKEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK--------G 99 (1054)
T ss_dssp CCCCSCCTTHHHHHHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT--------S
T ss_pred cccccccccccchHHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc--------C
Confidence 344555554433 3343 48999 9 9999999999999999999999999998 999999988652 6
Q ss_pred CeEEEEccchhHHHhh---------------------------------------------hhhhHHHHHHHhcCcceec
Q 042373 196 PVGLVMAPTGELVRQQ---------------------------------------------VRRGRMIDLLCKNGVKITN 230 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi---------------------------------------------~TPgrl~dll~~~~~~~~~ 230 (494)
+++|||+|||+||.|+ +||++|.+++..
T Consensus 100 ~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~------- 172 (1054)
T 1gku_B 100 KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE------- 172 (1054)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT-------
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH-------
Confidence 8999999999999997 366776665542
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhh-----------cCCCcEEEecCCCChHHH----HHHHh-----------
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNI-----------RPDRQAVLFSPTFPPRVE----ILARK----------- 284 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l-----------~~~~Q~ilfSAT~~~~v~----~l~~~----------- 284 (494)
|+++++|||||||+|++ |..++..++..+ +..+|+++||||++.. . .+...
T Consensus 173 L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~ 249 (1054)
T 1gku_B 173 LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRI 249 (1054)
T ss_dssp SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEE
T ss_pred hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCccc
Confidence 66899999999999998 567788887766 3578999999999876 3 22221
Q ss_pred -------------------------------------------------------------------cCCccceee----
Q 042373 285 -------------------------------------------------------------------TNVCNLSIA---- 293 (494)
Q Consensus 285 -------------------------------------------------------------------~g~~~ILVa---- 293 (494)
.|.++||||
T Consensus 250 ~~~~i~~~~~~~~k~~~L~~ll~~~~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~~~~l~~F~~G~~~VLVaTas~ 329 (1054)
T 1gku_B 250 TVRNVEDVAVNDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKFVEGEIDHLIGTAHY 329 (1054)
T ss_dssp CCCCEEEEEESCCCTTTTHHHHTTSCSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSSSHHHHHHHHTSCSEEEEECC-
T ss_pred CcCCceEEEechhHHHHHHHHHhhcCCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccHHHHHHHHHcCCCcEEEEecCC
Confidence 689999999
Q ss_pred ccccccCCCCCCc-eEEEecCCC---------------------------------------------------------
Q 042373 294 NSVRARGLDEKEL-ELVINFDAP--------------------------------------------------------- 315 (494)
Q Consensus 294 Tdv~~rGlDi~~v-~~VInyd~P--------------------------------------------------------- 315 (494)
|++++||||+|+| ++|||||+|
T Consensus 330 Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (1054)
T 1gku_B 330 YGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERP 409 (1054)
T ss_dssp -----CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCC
T ss_pred CCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999996 999999999
Q ss_pred --------------CCHhHHHhhhccCCC---cc--eEEEEecccCHHHHHHHHHHHHh
Q 042373 316 --------------NDYEDYVHHCCQSWL---KS--CAFRFISEENAIYATDLVKAFEL 355 (494)
Q Consensus 316 --------------~s~~~yvhR~GRaGr---~G--~aitfv~~~~~~~~~~i~~~l~~ 355 (494)
.+..+|+||+||+|| .| .+++|+...+...+..|.+.++.
T Consensus 410 ~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 410 QAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp SCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred cccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 789999999999888 44 48999999999999999999885
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-32 Score=265.37 Aligned_cols=185 Identities=34% Similarity=0.510 Sum_probs=160.1
Q ss_pred hcCceeccCCCCC--CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 106 QLDLKIREKCAPK--PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 106 ~~~i~v~g~~~P~--pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l 183 (494)
++.+.+.|...|. ++.+|++++|++.++++|.++||..|+|+|.++|+.++.|+|+++++|||||||++|++|++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l 85 (253)
T 1wrb_A 6 SIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHL 85 (253)
T ss_dssp CCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHH
Confidence 4457888999998 99999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HcCCCCC---CCCCCCeEEEEccchhHHHhh---------------------------------------hhhhHHHHHH
Q 042373 184 WEQPPVV---PGDDSPVGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLL 221 (494)
Q Consensus 184 ~~~~~~~---~~~~~p~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll 221 (494)
....... ....++++|||+|||+|+.|+ +||++|.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l 165 (253)
T 1wrb_A 86 VCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFI 165 (253)
T ss_dssp HTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHH
T ss_pred HhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 7643210 112368999999999999997 7999999998
Q ss_pred HhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhh--cC--CCcEEEecCCCChHHHHHHHhcCCccceee
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI--RP--DRQAVLFSPTFPPRVEILARKTNVCNLSIA 293 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l--~~--~~Q~ilfSAT~~~~v~~l~~~~g~~~ILVa 293 (494)
..+. ..++++++||+||||+|++++|...+..|+..+ +. .+|+++||||+++.+..+++..-...+.|.
T Consensus 166 ~~~~---~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~ 238 (253)
T 1wrb_A 166 EKNK---ISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMT 238 (253)
T ss_dssp HTTS---BCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEE
T ss_pred HcCC---CChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEE
Confidence 8643 468899999999999999999999999999954 33 789999999999999999987544444443
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=297.58 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=103.7
Q ss_pred HHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-
Q 042373 133 LETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ- 211 (494)
Q Consensus 133 l~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi- 211 (494)
..+|..+||.+|+|+|.++|+.++.|+|+|+++|||||||++|++|+++++...+. ..++++|||+||++|+.|+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~lvl~Pt~~L~~Q~~ 78 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ----GQKGKVVFFANQIPVYEQNK 78 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT----TCCCCEEEECSSHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc----CCCCeEEEEECCHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999998876431 1146899999999999997
Q ss_pred --------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCC-hh
Q 042373 212 --------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGF-EP 252 (494)
Q Consensus 212 --------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf-~~ 252 (494)
+||++|.+.+..+. ...++++++|||||||++..... ..
T Consensus 79 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~--~~~l~~~~~vViDEaH~~~~~~~~~~ 156 (696)
T 2ykg_A 79 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT--IPSLSIFTLMIFDECHNTSKQHPYNM 156 (696)
T ss_dssp HHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTS--SCCGGGCSEEEEETGGGCSTTCHHHH
T ss_pred HHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCc--ccccccccEEEEeCCCcccCcccHHH
Confidence 79999999988642 22688999999999999875431 11
Q ss_pred HHHHHHHh-----hcCCCcEEEecCCCC
Q 042373 253 QITRIVQN-----IRPDRQAVLFSPTFP 275 (494)
Q Consensus 253 ~i~~Il~~-----l~~~~Q~ilfSAT~~ 275 (494)
.+...+.. .++..|++++|||+.
T Consensus 157 i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 157 IMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 22222221 135677888888865
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=259.59 Aligned_cols=174 Identities=30% Similarity=0.422 Sum_probs=149.6
Q ss_pred eeccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCC
Q 042373 110 KIREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPV 189 (494)
Q Consensus 110 ~v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~ 189 (494)
.+...+.|.++.+|++++|++.++++|.++||..|+|+|.++|+.++.|+|+++++|||||||++|++|+++.+...
T Consensus 19 ~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~--- 95 (237)
T 3bor_A 19 GVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE--- 95 (237)
T ss_dssp --------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT---
T ss_pred CcccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc---
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999987532
Q ss_pred CCCCCCCeEEEEccchhHHHhh----------------------------------------hhhhHHHHHHHhcCccee
Q 042373 190 VPGDDSPVGLVMAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKIT 229 (494)
Q Consensus 190 ~~~~~~p~aLIl~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~ 229 (494)
..++++||++|||+|+.|+ +||++|.+++..+ ..
T Consensus 96 ---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~---~~ 169 (237)
T 3bor_A 96 ---FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR---YL 169 (237)
T ss_dssp ---SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTT---SS
T ss_pred ---CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhC---Cc
Confidence 1267899999999999997 6999999998764 34
Q ss_pred cccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCcccee
Q 042373 230 NLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSI 292 (494)
Q Consensus 230 ~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILV 292 (494)
.+.++++||+||||+|++++|...+..++..++..+|+++||||+|+.+..+++..-...+.|
T Consensus 170 ~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i 232 (237)
T 3bor_A 170 SPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRI 232 (237)
T ss_dssp CSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEE
T ss_pred CcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEE
Confidence 688999999999999999999999999999999999999999999999999987743334333
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-31 Score=255.95 Aligned_cols=164 Identities=26% Similarity=0.343 Sum_probs=142.7
Q ss_pred ccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCC
Q 042373 112 REKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVP 191 (494)
Q Consensus 112 ~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~ 191 (494)
.+...|.+..+|++++|++.+++.|.++||..|+++|.++|+.+++|+|+++++|||||||++|++|++..+....
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~---- 90 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN---- 90 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS----
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC----
Confidence 3567788899999999999999999999999999999999999999999999999999999999999999875432
Q ss_pred CCCCCeEEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceeccc
Q 042373 192 GDDSPVGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLT 232 (494)
Q Consensus 192 ~~~~p~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~ 232 (494)
.++++||++|||+|+.|+ +||++|.+++..+ ...++
T Consensus 91 --~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~---~~~~~ 165 (230)
T 2oxc_A 91 --LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELD---YLNPG 165 (230)
T ss_dssp --CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTT---SSCGG
T ss_pred --CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcC---Ccccc
Confidence 267999999999999997 7999999988764 34688
Q ss_pred ceEEEEEcccchhcccC-ChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 233 RVTYLVLDEADRMFDMG-FEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~g-f~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
++++||+||||+|+++| |...+..|+..++..+|+++||||+++.+..++..
T Consensus 166 ~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~ 218 (230)
T 2oxc_A 166 SIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTK 218 (230)
T ss_dssp GCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTT
T ss_pred cCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHH
Confidence 99999999999999998 99999999999999999999999999999887755
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-34 Score=316.17 Aligned_cols=218 Identities=14% Similarity=0.142 Sum_probs=167.9
Q ss_pred HHHhCCCC-----CCChhHH-----HHHHHHH------cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 135 TFSKLNHE-----NPVAIQA-----PASALII------SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 135 ~l~~~g~~-----~ptpiQ~-----~aip~il------~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
+|..+||. .||+||+ ++||.++ .|+|+|++|+||||||++|++|+++.+... ++++
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--------~~~~ 273 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--------RLRT 273 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--------TCCE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--------CCcE
Confidence 45567877 9999999 9999998 999999999999999999999999987653 6799
Q ss_pred EEEccchhHHHhh-------------------hhhhHHHHHHHhcCc-----ceecccceEEEEEcccchhcccCChhHH
Q 042373 199 LVMAPTGELVRQQ-------------------VRRGRMIDLLCKNGV-----KITNLTRVTYLVLDEADRMFDMGFEPQI 254 (494)
Q Consensus 199 LIl~PTreLa~Qi-------------------~TPgrl~dll~~~~~-----~~~~l~~l~~lVlDEaD~ml~~gf~~~i 254 (494)
|||+|||+||.|+ +||+++++++..+.. ....++++++||+||||+| +..+...+
T Consensus 274 lilaPTr~La~Q~~~~l~~~~i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~-~~~~~~~~ 352 (673)
T 2wv9_A 274 AVLAPTRVVAAEMAEALRGLPVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFT-DPASIAAR 352 (673)
T ss_dssp EEEESSHHHHHHHHHHTTTSCCEECCC---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCC-CHHHHHHH
T ss_pred EEEccHHHHHHHHHHHHhcCCeeeecccccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCccc-CccHHHHH
Confidence 9999999999998 467665543332210 0125789999999999998 33333344
Q ss_pred HHHHHhhc-CCCcEEEecCCCChHHHHHHHh-------------------------------------------------
Q 042373 255 TRIVQNIR-PDRQAVLFSPTFPPRVEILARK------------------------------------------------- 284 (494)
Q Consensus 255 ~~Il~~l~-~~~Q~ilfSAT~~~~v~~l~~~------------------------------------------------- 284 (494)
..+...++ ..+|+++||||+++.+..+...
T Consensus 353 ~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~~~~i~~v~~~~~~~~~~~~l~~l~~~~~~~lVF~~s~~~~e~la~~L~~ 432 (673)
T 2wv9_A 353 GYIATRVEAGEAAAIFMTATPPGTSDPFPDTNSPVHDVSSEIPDRAWSSGFEWITDYAGKTVWFVASVKMSNEIAQCLQR 432 (673)
T ss_dssp HHHHHHHHTTSCEEEEECSSCTTCCCSSCCCSSCEEEEECCCCSSCCSSCCHHHHSCCSCEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHhccccCCcEEEEcCCCChhhhhhcccCCceEEEeeecCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHh
Confidence 44444443 6899999999987665433321
Q ss_pred ---------------------cCCccceeeccccccCCCCCCceEEEe--------------------cCCCCCHhHHHh
Q 042373 285 ---------------------TNVCNLSIANSVRARGLDEKELELVIN--------------------FDAPNDYEDYVH 323 (494)
Q Consensus 285 ---------------------~g~~~ILVaTdv~~rGlDi~~v~~VIn--------------------yd~P~s~~~yvh 323 (494)
.|+.+|||||+++++|||+| +++||| ||+|.+..+|+|
T Consensus 433 ~g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Q 511 (673)
T 2wv9_A 433 AGKRVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQ 511 (673)
T ss_dssp TTCCEEEECSSSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHH
T ss_pred CCCeEEEeChHHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHH
Confidence 68999999999999999999 999998 679999999999
Q ss_pred hhccCCC----cceEEEEe---cccCHHHHHHHHHHHHhccCcchH
Q 042373 324 HCCQSWL----KSCAFRFI---SEENAIYATDLVKAFELSELVVRD 362 (494)
Q Consensus 324 R~GRaGr----~G~aitfv---~~~~~~~~~~i~~~l~~~~~~vp~ 362 (494)
|+||+|| .|.||+|+ ++.+..++..++..+......++.
T Consensus 512 r~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~~~~~ 557 (673)
T 2wv9_A 512 RRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNIHLPN 557 (673)
T ss_dssp HHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCBTT
T ss_pred HhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhccCCc
Confidence 9999665 57889996 577777777777766555545543
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-33 Score=294.03 Aligned_cols=200 Identities=19% Similarity=0.216 Sum_probs=158.7
Q ss_pred HHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------------------hhh
Q 042373 154 LIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------------------VRR 214 (494)
Q Consensus 154 ~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------------------~TP 214 (494)
.+++|+|++++||||||||++|++|+++.+... ++++||++|||+||.|+ +||
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--------~~~~lil~Ptr~La~Q~~~~l~~~~v~~~~~~~~~v~Tp 75 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--------RLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAFSAHGSG 75 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--------TCCEEEEESSHHHHHHHHHHTTTSCEEEESSCCCCCCCS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--------CCeEEEEcchHHHHHHHHHHHhcCCeEEecccceeccCC
Confidence 357899999999999999999999999988653 67999999999999998 677
Q ss_pred hHHHHHHHhcCc-----ceecccceEEEEEcccchhcccCChhHHHHHHHhh-cCCCcEEEecCCCChHHHHHHHh----
Q 042373 215 GRMIDLLCKNGV-----KITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI-RPDRQAVLFSPTFPPRVEILARK---- 284 (494)
Q Consensus 215 grl~dll~~~~~-----~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l-~~~~Q~ilfSAT~~~~v~~l~~~---- 284 (494)
+++++++..+.. ....++++++||+||||+| +.+|...+..+...+ +.++|+++||||+++.+..++..
T Consensus 76 ~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~ 154 (440)
T 1yks_A 76 REVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFPHSNGEI 154 (440)
T ss_dssp SCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCSSCE
T ss_pred ccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhhcCCCe
Confidence 776654433211 1123789999999999998 444444444444433 36799999999987665433321
Q ss_pred ------------------------------------------------------------------cCCccceeeccccc
Q 042373 285 ------------------------------------------------------------------TNVCNLSIANSVRA 298 (494)
Q Consensus 285 ------------------------------------------------------------------~g~~~ILVaTdv~~ 298 (494)
.|+.+|||||++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~v~e 234 (440)
T 1yks_A 155 EDVQTDIPSEPWNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATDIAE 234 (440)
T ss_dssp EEEECCCCSSCCSSSCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEESSSTT
T ss_pred eEeeeccChHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchhHHHHHhhhcCCCceEEEECChhh
Confidence 68999999999999
Q ss_pred cCCCCCCceEEEe-------------------cCCCCCHhHHHhhhccCCC----cceEEEEe---cccCHHHHHHHHHH
Q 042373 299 RGLDEKELELVIN-------------------FDAPNDYEDYVHHCCQSWL----KSCAFRFI---SEENAIYATDLVKA 352 (494)
Q Consensus 299 rGlDi~~v~~VIn-------------------yd~P~s~~~yvhR~GRaGr----~G~aitfv---~~~~~~~~~~i~~~ 352 (494)
+|||+| +++||| |+.|.+..+|+||+||+|| .|.|++|+ ++.+...+..+.+.
T Consensus 235 ~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~ 313 (440)
T 1yks_A 235 MGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEAS 313 (440)
T ss_dssp CCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHH
T ss_pred eeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHH
Confidence 999999 999986 9999999999999999766 57899996 67788888888888
Q ss_pred HHhccCcchHH
Q 042373 353 FELSELVVRDD 363 (494)
Q Consensus 353 l~~~~~~vp~~ 363 (494)
+.....++|..
T Consensus 314 ~~~~~~~l~~~ 324 (440)
T 1yks_A 314 MLLDNMEVRGG 324 (440)
T ss_dssp HHHTTSCCGGG
T ss_pred hcccccccccc
Confidence 88777777653
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-31 Score=252.88 Aligned_cols=171 Identities=32% Similarity=0.437 Sum_probs=151.3
Q ss_pred CCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCC
Q 042373 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSP 196 (494)
Q Consensus 117 P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p 196 (494)
+.++.+|++++|++.+++.|.++||..|+|+|.++|+.++.|+|+++++|||||||++|++|+++++..... ....++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~ 98 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW--TSTDGL 98 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC--CGGGCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc--cccCCc
Confidence 467889999999999999999999999999999999999999999999999999999999999999876432 112378
Q ss_pred eEEEEccchhHHHhh--------------------------------------hhhhHHHHHHHhcCcceecccceEEEE
Q 042373 197 VGLVMAPTGELVRQQ--------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 197 ~aLIl~PTreLa~Qi--------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
++||++|||+|+.|+ +||++|.+++.... ...+.++++||
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~--~~~~~~~~~lV 176 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETV--SFHATDLQMLV 176 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCS--SCCCTTCCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcC--CcccccccEEE
Confidence 999999999999997 69999999887642 34678999999
Q ss_pred EcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCccce
Q 042373 239 LDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLS 291 (494)
Q Consensus 239 lDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~IL 291 (494)
+||||+|++++|...+..++..+++.+|+++||||+++.+..+++..-...+.
T Consensus 177 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~ 229 (236)
T 2pl3_A 177 LDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEY 229 (236)
T ss_dssp ETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEE
T ss_pred EeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEE
Confidence 99999999999999999999999999999999999999999998774333333
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-31 Score=256.88 Aligned_cols=168 Identities=38% Similarity=0.568 Sum_probs=150.5
Q ss_pred CCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCC
Q 042373 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSP 196 (494)
Q Consensus 117 P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p 196 (494)
+.++.+|++++|++.+++.|+++||..|+++|.++|+.++.|+|++++||||||||++|++|++.++.... .++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~------~~~ 112 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP------QRL 112 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC------CSS
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC------CCc
Confidence 34678999999999999999999999999999999999999999999999999999999999999987643 267
Q ss_pred eEEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEE
Q 042373 197 VGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYL 237 (494)
Q Consensus 197 ~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~l 237 (494)
++||++|||+|+.|+ +||++|.+++.... ...++++++|
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~l~~~~~l 190 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK--GFNLRALKYL 190 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHST--TCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC--CcCccccCEE
Confidence 899999999999997 79999999887632 2468899999
Q ss_pred EEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCcccee
Q 042373 238 VLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSI 292 (494)
Q Consensus 238 VlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILV 292 (494)
|+||||+|++++|...+..++..+++.+|+++||||+++.+..+++..-...+.|
T Consensus 191 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i 245 (249)
T 3ber_A 191 VMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKC 245 (249)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEE
T ss_pred EEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEE
Confidence 9999999999999999999999999999999999999999999988744334433
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=249.50 Aligned_cols=171 Identities=31% Similarity=0.414 Sum_probs=153.1
Q ss_pred cCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCC
Q 042373 113 EKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPG 192 (494)
Q Consensus 113 g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~ 192 (494)
....|+++.+|++++|++.+++.|.++||..|+|+|.++++.++.|+|+++++|||||||++|++|+++++....
T Consensus 6 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~----- 80 (224)
T 1qde_A 6 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV----- 80 (224)
T ss_dssp CBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC-----
T ss_pred ccccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC-----
Confidence 356788999999999999999999999999999999999999999999999999999999999999999875432
Q ss_pred CCCCeEEEEccchhHHHhh--------------------------------------hhhhHHHHHHHhcCcceecccce
Q 042373 193 DDSPVGLVMAPTGELVRQQ--------------------------------------VRRGRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 193 ~~~p~aLIl~PTreLa~Qi--------------------------------------~TPgrl~dll~~~~~~~~~l~~l 234 (494)
.++++||++|||+|+.|+ +||++|.+++... ...++++
T Consensus 81 -~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~---~~~~~~~ 156 (224)
T 1qde_A 81 -KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRR---RFRTDKI 156 (224)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTT---SSCCTTC
T ss_pred -CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhC---CcchhhC
Confidence 267999999999999997 7999999988764 3468899
Q ss_pred EEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCcccee
Q 042373 235 TYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSI 292 (494)
Q Consensus 235 ~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILV 292 (494)
++||+||||++++++|...+..++..+++.+|+++||||+++.+..+++..-...+.|
T Consensus 157 ~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i 214 (224)
T 1qde_A 157 KMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRI 214 (224)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEE
T ss_pred cEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEE
Confidence 9999999999999999999999999999999999999999999999988744444443
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=291.50 Aligned_cols=132 Identities=18% Similarity=0.200 Sum_probs=104.3
Q ss_pred hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------
Q 042373 138 KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------ 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------ 211 (494)
-+|+..|+|+|.++|+.++.|+|+|+++|||||||++|++|++..+...+. ..++++|||+||++|+.|+
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----cCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999876531 1267899999999999997
Q ss_pred ---------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHH-HHH
Q 042373 212 ---------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQI-TRI 257 (494)
Q Consensus 212 ---------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i-~~I 257 (494)
+||++|.+++..+. ...++++++|||||||++...+....+ ..+
T Consensus 319 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~ 396 (797)
T 4a2q_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVLMTRY 396 (797)
T ss_dssp HHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEETTGGGCSTTSHHHHHHHHH
T ss_pred hcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhcc--ccccccCCEEEEECccccCCCccHHHHHHHH
Confidence 79999999887642 226889999999999999976543333 222
Q ss_pred HHhh----cCCCcEEEecCCCC
Q 042373 258 VQNI----RPDRQAVLFSPTFP 275 (494)
Q Consensus 258 l~~l----~~~~Q~ilfSAT~~ 275 (494)
+... .+..|++++|||++
T Consensus 397 ~~~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 397 LEQKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp HHHHHTTCCCCCEEEEEESCCC
T ss_pred HHHhhccCCCCCeEEEEcCCcc
Confidence 2221 45689999999983
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-31 Score=251.70 Aligned_cols=157 Identities=29% Similarity=0.457 Sum_probs=143.2
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
|+.+|++++|++.+++.|.++||.+|+|+|.++|+.+++|+|+++++|||||||++|++|++..+.... .++++
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~------~~~~~ 75 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER------AEVQA 75 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS------CSCCE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc------CCceE
Confidence 467899999999999999999999999999999999999999999999999999999999999875422 26789
Q ss_pred EEEccchhHHHhh-------------------------------------------hhhhHHHHHHHhcCcceecccceE
Q 042373 199 LVMAPTGELVRQQ-------------------------------------------VRRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 199 LIl~PTreLa~Qi-------------------------------------------~TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
||++|||+|+.|+ +||+++.+++..+ ...+++++
T Consensus 76 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~---~~~~~~~~ 152 (219)
T 1q0u_A 76 VITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQ---ALDVHTAH 152 (219)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTT---CCCGGGCC
T ss_pred EEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcC---CCCcCcce
Confidence 9999999999997 7999999988764 34688999
Q ss_pred EEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 236 YLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 236 ~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
+||+||||++++++|...+..++..+++.+|+++||||+|+.+..+++.
T Consensus 153 ~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~ 201 (219)
T 1q0u_A 153 ILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKK 201 (219)
T ss_dssp EEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHH
T ss_pred EEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988876
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=244.00 Aligned_cols=155 Identities=30% Similarity=0.518 Sum_probs=142.3
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
.+|++++|++.+++.|.++||.+|+|+|.++++.++.|+|+++++|||||||++|++|++.++... ..++++||
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~------~~~~~~li 76 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK------KDNIQAMV 76 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT------SCSCCEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc------CCCeeEEE
Confidence 579999999999999999999999999999999999999999999999999999999999987432 22678999
Q ss_pred EccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEc
Q 042373 201 MAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLD 240 (494)
Q Consensus 201 l~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlD 240 (494)
++||++|+.|+ +||+++.+++..+ ...++++++||+|
T Consensus 77 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~---~~~~~~~~~lViD 153 (206)
T 1vec_A 77 IVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG---VAKVDHVQMIVLD 153 (206)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT---CSCCTTCCEEEEE
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcC---CcCcccCCEEEEE
Confidence 99999999997 6899999888764 3468899999999
Q ss_pred ccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 241 EADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 241 EaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
|||+|++.+|...+..++..+++.+|+++||||+|+.+..+++.
T Consensus 154 Eah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~ 197 (206)
T 1vec_A 154 EADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNS 197 (206)
T ss_dssp THHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHH
T ss_pred ChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHH
Confidence 99999999999999999999998999999999999999988876
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=257.02 Aligned_cols=160 Identities=32% Similarity=0.476 Sum_probs=141.3
Q ss_pred CCcccCC--CCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 121 KTWRQTG--LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 121 ~~f~~l~--L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
.+|++++ |++.+++.|+++||..|+|+|.++|+.++.|+|++++||||||||++|++|+++.+...... ...++++
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~~~~~ 129 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRNGTGV 129 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC--GGGCCCE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc--ccCCceE
Confidence 4577777 99999999999999999999999999999999999999999999999999999998764321 1227789
Q ss_pred EEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 199 LVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 199 LIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
|||+|||+||.|+ +||+++.+++.... ...++++++||+
T Consensus 130 lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~--~~~~~~l~~lVi 207 (262)
T 3ly5_A 130 LILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTP--GFMYKNLQCLVI 207 (262)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCT--TCCCTTCCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccC--CcccccCCEEEE
Confidence 9999999999997 79999999887643 246889999999
Q ss_pred cccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 240 DEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 240 DEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
||||+|++++|...+..|+..++..+|+++||||+++.+..+++.
T Consensus 208 DEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~ 252 (262)
T 3ly5_A 208 DEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARI 252 (262)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHH
T ss_pred cChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999875
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-30 Score=284.63 Aligned_cols=127 Identities=22% Similarity=0.318 Sum_probs=110.4
Q ss_pred hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------
Q 042373 138 KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------ 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------ 211 (494)
.+|+ .||++|..++|.++.|+ |+.++||+|||++|.+|++...+. |..++||+|||+||.|+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---------g~~v~VvTpTreLA~Qdae~m~~ 174 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---------GNGVHIVTVNDYLAKRDSEWMGR 174 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---------TSCEEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---------CCCeEEEeCCHHHHHHHHHHHHH
Confidence 4899 99999999999999999 999999999999999999865543 56799999999999997
Q ss_pred -------------------------------hhhhHH-HHHHHhcC---cceecccceEEEEEcccchhc-c--------
Q 042373 212 -------------------------------VRRGRM-IDLLCKNG---VKITNLTRVTYLVLDEADRMF-D-------- 247 (494)
Q Consensus 212 -------------------------------~TPgrl-~dll~~~~---~~~~~l~~l~~lVlDEaD~ml-~-------- 247 (494)
+||++| .|+|..+- .....++.+.|+||||||+|| |
T Consensus 175 l~~~lGLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLii 254 (922)
T 1nkt_A 175 VHRFLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLII 254 (922)
T ss_dssp HHHHTTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEE
T ss_pred HHhhcCCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceee
Confidence 799999 88887641 124568899999999999999 5
Q ss_pred -------cCChhHHHHHHHhhc---------CCCcEE-----------------EecCCCCh
Q 042373 248 -------MGFEPQITRIVQNIR---------PDRQAV-----------------LFSPTFPP 276 (494)
Q Consensus 248 -------~gf~~~i~~Il~~l~---------~~~Q~i-----------------lfSAT~~~ 276 (494)
++|...+..|+..++ +.+|++ +||||++.
T Consensus 255 Sg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~ 316 (922)
T 1nkt_A 255 SGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSP 316 (922)
T ss_dssp EEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCC
T ss_pred cCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchh
Confidence 358889999999997 689999 99999864
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-30 Score=241.29 Aligned_cols=166 Identities=36% Similarity=0.542 Sum_probs=147.2
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
.+|++++|++.+++.|.++||..|+|+|.++++.+++|+|+++++|||||||++|++|++.++..... ...++++||
T Consensus 1 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~---~~~~~~~li 77 (207)
T 2gxq_A 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE---RGRKPRALV 77 (207)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC---TTCCCSEEE
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc---cCCCCcEEE
Confidence 36999999999999999999999999999999999999999999999999999999999998864321 123789999
Q ss_pred EccchhHHHhh-------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccc
Q 042373 201 MAPTGELVRQQ-------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEAD 243 (494)
Q Consensus 201 l~PTreLa~Qi-------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD 243 (494)
++|||+|+.|+ +||+++.+++..+ ...++++++||+||||
T Consensus 78 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~---~~~~~~~~~iViDEah 154 (207)
T 2gxq_A 78 LTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG---VLDLSRVEVAVLDEAD 154 (207)
T ss_dssp ECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHT---SSCCTTCSEEEEESHH
T ss_pred EECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcC---CcchhhceEEEEEChh
Confidence 99999999997 6899999988874 3468899999999999
Q ss_pred hhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCcccee
Q 042373 244 RMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSI 292 (494)
Q Consensus 244 ~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILV 292 (494)
++++++|...+..++..+++.+|+++||||+++.+..+++......++|
T Consensus 155 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i 203 (207)
T 2gxq_A 155 EMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLI 203 (207)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEE
T ss_pred HhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEE
Confidence 9999999999999999999999999999999999999887744434433
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=292.12 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=115.4
Q ss_pred HhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----
Q 042373 137 SKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----- 211 (494)
Q Consensus 137 ~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----- 211 (494)
..++|. |+|+|.++|+.++.|++++++||||||||++|.+|++..+.. +.++||++||++|+.|+
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---------g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---------TCEEEEEESSHHHHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---------CCeEEEECChHHHHHHHHHHHH
Confidence 346775 999999999999999999999999999999999999988743 67999999999999998
Q ss_pred -----------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEE
Q 042373 212 -----------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAV 268 (494)
Q Consensus 212 -----------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~i 268 (494)
+||++|.+++.++. ..++++++|||||||+|.++++...++.++..++...|++
T Consensus 151 ~~~~~vglltGd~~~~~~~~IvV~Tpe~L~~~L~~~~---~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il 227 (1010)
T 2xgj_A 151 AEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGS---EVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYV 227 (1010)
T ss_dssp HHHSCEEEECSSCEECTTCSEEEEEHHHHHHHHHHTC---TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEE
T ss_pred HHhCCEEEEeCCCccCCCCCEEEEcHHHHHHHHHcCc---chhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEE
Confidence 79999999887643 3688999999999999999999999999999999999999
Q ss_pred EecCCCCh
Q 042373 269 LFSPTFPP 276 (494)
Q Consensus 269 lfSAT~~~ 276 (494)
++|||+++
T Consensus 228 ~LSATi~n 235 (1010)
T 2xgj_A 228 FLSATIPN 235 (1010)
T ss_dssp EEECCCTT
T ss_pred EEcCCCCC
Confidence 99999975
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=287.41 Aligned_cols=113 Identities=19% Similarity=0.248 Sum_probs=85.7
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
+|. .||++|..++|.++.|+ |+.++||||||++|++|++.+... ++.++||+|||+||.|+
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---------g~~vlVltPTreLA~Q~~e~~~~l 138 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAENNRPL 138 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---------SSCCEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---------CCcEEEEcCCHHHHHHHHHHHHHH
Confidence 665 89999999999999999 999999999999999999976532 67899999999999997
Q ss_pred ------------------------------hhhhHH-HHHHHhcC---cceecccceEEEEEcccchhc-ccC-------
Q 042373 212 ------------------------------VRRGRM-IDLLCKNG---VKITNLTRVTYLVLDEADRMF-DMG------- 249 (494)
Q Consensus 212 ------------------------------~TPgrl-~dll~~~~---~~~~~l~~l~~lVlDEaD~ml-~~g------- 249 (494)
+||||| .|+|..+- .....++++.++||||||+|| +++
T Consensus 139 ~~~lgl~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiS 218 (853)
T 2fsf_A 139 FEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIIS 218 (853)
T ss_dssp HHHTTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEE
T ss_pred HHhcCCeEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccccc
Confidence 799999 79887642 123567999999999999999 654
Q ss_pred --------ChhHHHHHHHhhcC
Q 042373 250 --------FEPQITRIVQNIRP 263 (494)
Q Consensus 250 --------f~~~i~~Il~~l~~ 263 (494)
|...+..|+..+++
T Consensus 219 g~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 219 GPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp EC--------------------
T ss_pred CCCccchhHHHHHHHHHHhchh
Confidence 66788899888864
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-29 Score=242.68 Aligned_cols=165 Identities=24% Similarity=0.388 Sum_probs=140.8
Q ss_pred eccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCC
Q 042373 111 IREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVV 190 (494)
Q Consensus 111 v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~ 190 (494)
+.|...+....+|++++|++.++++|.++||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+...
T Consensus 4 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~---- 79 (220)
T 1t6n_A 4 VKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV---- 79 (220)
T ss_dssp ----------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC----
T ss_pred CCCCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc----
Confidence 3455555666789999999999999999999999999999999999999999999999999999999999887432
Q ss_pred CCCCCCeEEEEccchhHHHhh-----------------------------------------hhhhHHHHHHHhcCccee
Q 042373 191 PGDDSPVGLVMAPTGELVRQQ-----------------------------------------VRRGRMIDLLCKNGVKIT 229 (494)
Q Consensus 191 ~~~~~p~aLIl~PTreLa~Qi-----------------------------------------~TPgrl~dll~~~~~~~~ 229 (494)
..++++||++||++|+.|+ +||+++.+++... ..
T Consensus 80 --~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~---~~ 154 (220)
T 1t6n_A 80 --TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK---SL 154 (220)
T ss_dssp --TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT---SS
T ss_pred --CCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhC---CC
Confidence 2257899999999999997 6899998888764 34
Q ss_pred cccceEEEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 230 NLTRVTYLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 230 ~l~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
.++++++||+||||++++ .+|...+..++..+++.+|+++||||+++.+..+++.
T Consensus 155 ~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 210 (220)
T 1t6n_A 155 NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK 210 (220)
T ss_dssp CCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHT
T ss_pred CcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHH
Confidence 688999999999999997 5899999999999988999999999999999888876
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=302.46 Aligned_cols=211 Identities=14% Similarity=0.117 Sum_probs=173.1
Q ss_pred CCHHHHHHHHhCCCCCCChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchh
Q 042373 128 LTTKILETFSKLNHENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE 206 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTre 206 (494)
|+....+.|...+|..++|+|.++++.++.+ +|++++||||||||++|.+||++++.... +.++||++|||+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-------~~kavyi~P~ra 983 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-------EGRCVYITPMEA 983 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-------TCCEEEECSCHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-------CCEEEEEcChHH
Confidence 6677888888889999999999999999865 68999999999999999999999998653 568999999999
Q ss_pred HHHhh-------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccC
Q 042373 207 LVRQQ-------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMG 249 (494)
Q Consensus 207 La~Qi-------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~g 249 (494)
||.|+ +||+++..++.+ ......+++|++||+||+|+|.+.
T Consensus 984 La~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~-~~~~~~l~~v~lvViDE~H~l~d~- 1061 (1724)
T 4f92_B 984 LAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRR-WKQRKNVQNINLFVVDEVHLIGGE- 1061 (1724)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTT-TTTCHHHHSCSEEEECCGGGGGST-
T ss_pred HHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhC-cccccccceeeEEEeechhhcCCC-
Confidence 99997 899998655543 223345889999999999988764
Q ss_pred ChhHHHHHHH-------hhcCCCcEEEecCCCChHHHHHHHh--------------------------------------
Q 042373 250 FEPQITRIVQ-------NIRPDRQAVLFSPTFPPRVEILARK-------------------------------------- 284 (494)
Q Consensus 250 f~~~i~~Il~-------~l~~~~Q~ilfSAT~~~~v~~l~~~-------------------------------------- 284 (494)
....++.++. .+++..|+|++|||+++. ..++..
T Consensus 1062 rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~ 1140 (1724)
T 4f92_B 1062 NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLS 1140 (1724)
T ss_dssp THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHT
T ss_pred CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhh
Confidence 4555555544 345789999999999853 344432
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 1141 ~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hH 1220 (1724)
T 4f92_B 1141 MAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLH 1220 (1724)
T ss_dssp THHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEEC
T ss_pred hcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEEC
Confidence
Q ss_pred ----------------cCCccceeeccccccCCCCCCceEEEe----------cCCCCCHhHHHhhhccCCC-----cce
Q 042373 285 ----------------TNVCNLSIANSVRARGLDEKELELVIN----------FDAPNDYEDYVHHCCQSWL-----KSC 333 (494)
Q Consensus 285 ----------------~g~~~ILVaTdv~~rGlDi~~v~~VIn----------yd~P~s~~~yvhR~GRaGr-----~G~ 333 (494)
.|.++|||||+++++|||+|.+.+||. +..|.+..+|+||+||||| .|.
T Consensus 1221 agL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~ 1300 (1724)
T 4f92_B 1221 EGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGR 1300 (1724)
T ss_dssp TTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceE
Confidence 899999999999999999999999993 3347789999999999988 467
Q ss_pred EEEEecccCHHHHHH
Q 042373 334 AFRFISEENAIYATD 348 (494)
Q Consensus 334 aitfv~~~~~~~~~~ 348 (494)
|+.|+.+.+..++..
T Consensus 1301 avll~~~~~~~~~~~ 1315 (1724)
T 4f92_B 1301 CVIMCQGSKKDFFKK 1315 (1724)
T ss_dssp EEEEEEGGGHHHHHH
T ss_pred EEEEecchHHHHHHH
Confidence 999988877655543
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=280.59 Aligned_cols=131 Identities=16% Similarity=0.118 Sum_probs=100.5
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----------
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------- 211 (494)
.|+|+|.++++.++.|+|+|+++|||+|||++|++|+++++..... ...+.++|||+||++|+.|+
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK---ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH---HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc---cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 7999999999999999999999999999999999999998865321 01136899999999999876
Q ss_pred ----------------------------hhhhHHHHHHHhcC---cceecccceEEEEEcccchhcccCChhHHHH-HHH
Q 042373 212 ----------------------------VRRGRMIDLLCKNG---VKITNLTRVTYLVLDEADRMFDMGFEPQITR-IVQ 259 (494)
Q Consensus 212 ----------------------------~TPgrl~dll~~~~---~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~-Il~ 259 (494)
+||++|.+.+.... ...+.+.++++|||||||++...++...+.. ++.
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 68999988774321 2235688999999999999876554443333 222
Q ss_pred h----hc---------CCCcEEEecCCCCh
Q 042373 260 N----IR---------PDRQAVLFSPTFPP 276 (494)
Q Consensus 260 ~----l~---------~~~Q~ilfSAT~~~ 276 (494)
. .. +..|++++|||.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred hhhcccccccccccCCCCCEEEEecccccc
Confidence 2 12 66899999999875
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-30 Score=277.55 Aligned_cols=176 Identities=15% Similarity=0.210 Sum_probs=133.4
Q ss_pred HHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------------------h
Q 042373 152 SALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------------------V 212 (494)
Q Consensus 152 ip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------------------~ 212 (494)
...+..|+++|++||||||||++|++|+++++... ++++||++|||+||.|+ .
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--------~~~~lvl~Ptr~La~Q~~~~l~g~~v~~~~~~~~~~~ 86 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--------RLRTAVLAPTRVVAAEMAEALRGLPVRYQTSAVQREH 86 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--------TCCEEEEECSHHHHHHHHHHTTTSCEEECC-------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--------CCcEEEECchHHHHHHHHHHhcCceEeEEecccccCC
Confidence 34466789999999999999999999999988753 67899999999999998 2
Q ss_pred hhhHHHHHHHhcC-----cceecccceEEEEEcccch-----hcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHH
Q 042373 213 RRGRMIDLLCKNG-----VKITNLTRVTYLVLDEADR-----MFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 213 TPgrl~dll~~~~-----~~~~~l~~l~~lVlDEaD~-----ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~ 282 (494)
||+++++++..+. .....++++++|||||||+ ++.++|...+. .++++|+++||||++..+..+.
T Consensus 87 t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~SAT~~~~~~~~~ 161 (459)
T 2z83_A 87 QGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMTATPPGTTDPFP 161 (459)
T ss_dssp -CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEECSSCTTCCCSSC
T ss_pred CCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEEcCCCcchhhhc
Confidence 4444332221110 0113578999999999998 56565544322 2368999999999886554332
Q ss_pred Hh----------------------------------------------------------------------cCCcccee
Q 042373 283 RK----------------------------------------------------------------------TNVCNLSI 292 (494)
Q Consensus 283 ~~----------------------------------------------------------------------~g~~~ILV 292 (494)
.. .|..+|||
T Consensus 162 ~~~~pi~~~~~~~~~~~~~~~~~~l~~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~R~~~~~~f~~g~~~iLV 241 (459)
T 2z83_A 162 DSNAPIHDLQDEIPDRAWSSGYEWITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVI 241 (459)
T ss_dssp CCSSCEEEEECCCCSSCCSSCCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCCCCCGGGSSSCCCSEEE
T ss_pred cCCCCeEEecccCCcchhHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHHHHHHHhhccCCCceEEE
Confidence 21 68899999
Q ss_pred eccccccCCCCCCceEEEe--------------------cCCCCCHhHHHhhhccCCC----cceEEEEeccc
Q 042373 293 ANSVRARGLDEKELELVIN--------------------FDAPNDYEDYVHHCCQSWL----KSCAFRFISEE 341 (494)
Q Consensus 293 aTdv~~rGlDi~~v~~VIn--------------------yd~P~s~~~yvhR~GRaGr----~G~aitfv~~~ 341 (494)
||+++++|||+|+ ++||| ||+|.+..+|+||+||+|| .|.+++|+++.
T Consensus 242 aT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 242 TTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999999 99999 7899999999999999776 46799999875
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-29 Score=287.23 Aligned_cols=132 Identities=18% Similarity=0.205 Sum_probs=102.5
Q ss_pred HhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----
Q 042373 137 SKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----- 211 (494)
Q Consensus 137 ~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----- 211 (494)
.-.|+..|+|+|.++|+.++.|+|+|++++||||||++|++|+++++...+. ..++++|||+||++|+.|+
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~----~~~~~vLvl~Pt~~L~~Q~~~~~~ 317 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFK 317 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS----SCCCCEEEECSSHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc----cCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999988765321 1256899999999999997
Q ss_pred ----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhH-HHH
Q 042373 212 ----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQ-ITR 256 (494)
Q Consensus 212 ----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~-i~~ 256 (494)
+||++|.+++..+. ...+.++++|||||||++...+.... +..
T Consensus 318 ~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~--~~~l~~~~liViDEaH~~~~~~~~~~i~~~ 395 (936)
T 4a2w_A 318 HHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVLMTR 395 (936)
T ss_dssp HHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCc--cccccCCCEEEEECccccCCCccHHHHHHH
Confidence 79999999987642 23688999999999999987653222 223
Q ss_pred HHHhh----cCCCcEEEecCCC
Q 042373 257 IVQNI----RPDRQAVLFSPTF 274 (494)
Q Consensus 257 Il~~l----~~~~Q~ilfSAT~ 274 (494)
++... .+..|+++||||+
T Consensus 396 ~~~~~~~~~~~~~~~l~LSATp 417 (936)
T 4a2w_A 396 YLEQKFNSASQLPQILGLTASV 417 (936)
T ss_dssp HHHHHHTTCSCCCEEEEEESCC
T ss_pred HHHHhhccCCCcCeEEEecCCc
Confidence 33221 4568999999998
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-29 Score=285.54 Aligned_cols=125 Identities=15% Similarity=0.177 Sum_probs=113.9
Q ss_pred hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------
Q 042373 138 KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------ 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------ 211 (494)
.++| .|+|+|.++|+.++.|+|+++++|||||||++|++|+...+.. ++++||++||++|+.|+
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---------g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---------MTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---------TCEEEEEESCGGGHHHHHHHHHT
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHHHH
Confidence 3567 4899999999999999999999999999999999999887643 67899999999999998
Q ss_pred ------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcE
Q 042373 212 ------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQA 267 (494)
Q Consensus 212 ------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ 267 (494)
+||++|.+++.... ..++++.+|||||||++.+++|...+..++..+++..|+
T Consensus 105 ~~~~~~v~~l~G~~~~~~~~~IlV~Tpe~L~~~l~~~~---~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~i 181 (997)
T 4a4z_A 105 TFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGA---DLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181 (997)
T ss_dssp TC--CCEEEECSSCEECTTSSEEEEEHHHHHHHHHHTC---SGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEE
T ss_pred HcCCCeEEEEeCCCccCCCCCEEEECHHHHHHHHHhCc---hhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCE
Confidence 79999999887643 367899999999999999999999999999999999999
Q ss_pred EEecCCCC
Q 042373 268 VLFSPTFP 275 (494)
Q Consensus 268 ilfSAT~~ 275 (494)
|++|||++
T Consensus 182 IlLSAT~~ 189 (997)
T 4a4z_A 182 ILLSATVP 189 (997)
T ss_dssp EEEECCCT
T ss_pred EEEcCCCC
Confidence 99999986
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-30 Score=284.73 Aligned_cols=191 Identities=18% Similarity=0.150 Sum_probs=153.1
Q ss_pred CChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------------
Q 042373 144 PVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------ 211 (494)
Q Consensus 144 ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------ 211 (494)
+.+.|..+++.+..++|++++|+||||||++|.+|+++. +.++||++|||+||.|+
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------------g~~vLVl~PTReLA~Qia~~l~~~~g~~v 285 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------------GYKVLVLNPSVAATLGFGAYMSKAHGIDP 285 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------------TCCEEEEESCHHHHHHHHHHHHHHHSCCC
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------------CCeEEEEcchHHHHHHHHHHHHHHhCCCe
Confidence 344555555556678899999999999999999998862 56899999999999998
Q ss_pred -----------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCc--EEEecC
Q 042373 212 -----------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQ--AVLFSP 272 (494)
Q Consensus 212 -----------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q--~ilfSA 272 (494)
+||++| +.. ..+.++++++||||||| +++++|...+..|++.++..+| ++++||
T Consensus 286 g~~vG~~~~~~~~~IlV~TPGrL---l~~---~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~llil~SA 358 (666)
T 3o8b_A 286 NIRTGVRTITTGAPVTYSTYGKF---LAD---GGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARLVVLATA 358 (666)
T ss_dssp EEECSSCEECCCCSEEEEEHHHH---HHT---TSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSEEEEEES
T ss_pred eEEECcEeccCCCCEEEECcHHH---HhC---CCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCceEEEECC
Confidence 799997 333 23568899999999994 7788999999999999988777 677799
Q ss_pred CCChHHHHH---------------------------------------------HHh---------------------cC
Q 042373 273 TFPPRVEIL---------------------------------------------ARK---------------------TN 286 (494)
Q Consensus 273 T~~~~v~~l---------------------------------------------~~~---------------------~g 286 (494)
|++..+... +.. .+
T Consensus 359 T~~~~i~~~~p~i~~v~~~~~~~i~~~~~~~~l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~er~~~ 438 (666)
T 3o8b_A 359 TPPGSVTVPHPNIEEVALSNTGEIPFYGKAIPIEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPTI 438 (666)
T ss_dssp SCTTCCCCCCTTEEEEECBSCSSEEETTEEECGGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGGSCSS
T ss_pred CCCcccccCCcceEEEeecccchhHHHHhhhhhhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHhC
Confidence 987543210 000 46
Q ss_pred CccceeeccccccCCCCCCceEEE----------ecC-----------CCCCHhHHHhhhccCCC--cceEEEEecccCH
Q 042373 287 VCNLSIANSVRARGLDEKELELVI----------NFD-----------APNDYEDYVHHCCQSWL--KSCAFRFISEENA 343 (494)
Q Consensus 287 ~~~ILVaTdv~~rGlDi~~v~~VI----------nyd-----------~P~s~~~yvhR~GRaGr--~G~aitfv~~~~~ 343 (494)
..+|||||++++||||++ |++|| ||| +|.+.++|+||+||+|| .|. |+|+++.+.
T Consensus 439 ~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 439 GDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGER 516 (666)
T ss_dssp SCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCSSSCEE-EEESCCCCB
T ss_pred CCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCCCCCCE-EEEEecchh
Confidence 669999999999999997 99988 788 99999999999999876 788 999998775
Q ss_pred HH--H--HHHHHHHHh
Q 042373 344 IY--A--TDLVKAFEL 355 (494)
Q Consensus 344 ~~--~--~~i~~~l~~ 355 (494)
.. + ..+.+.++.
T Consensus 517 ~~~~l~~~~i~~~~~~ 532 (666)
T 3o8b_A 517 PSGMFDSSVLCECYDA 532 (666)
T ss_dssp CSSBCCHHHHHHHHHH
T ss_pred hcccccHHHHHHHhcC
Confidence 54 3 566666553
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=275.71 Aligned_cols=200 Identities=16% Similarity=0.150 Sum_probs=149.4
Q ss_pred HHHHHHHHhCCCCCCChhHHHHHHHHHcC------CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEcc
Q 042373 130 TKILETFSKLNHENPVAIQAPASALIISG------LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAP 203 (494)
Q Consensus 130 ~~ll~~l~~~g~~~ptpiQ~~aip~il~g------rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~P 203 (494)
..+...+..++| .||++|.++|+.++.+ +|++++|+||||||++|++|++..+.. +.+++||+|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---------g~qvlvlaP 425 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---------GFQTAFMVP 425 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---------TSCEEEECS
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeC
Confidence 344445678999 9999999999999876 699999999999999999999998854 678999999
Q ss_pred chhHHHhhh---------------------hhh---HHHHHHHhcCcc-----------eecccceEEEEEcccchhccc
Q 042373 204 TGELVRQQV---------------------RRG---RMIDLLCKNGVK-----------ITNLTRVTYLVLDEADRMFDM 248 (494)
Q Consensus 204 TreLa~Qi~---------------------TPg---rl~dll~~~~~~-----------~~~l~~l~~lVlDEaD~ml~~ 248 (494)
|++||.|+. +.. ..+..+..+... ...+.++.+||+||+|++..
T Consensus 426 tr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g~- 504 (780)
T 1gm5_A 426 TSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGV- 504 (780)
T ss_dssp CHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC---
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecccchhhH-
Confidence 999999981 000 111112211110 13578999999999999632
Q ss_pred CChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh--------------------------------------------
Q 042373 249 GFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK-------------------------------------------- 284 (494)
Q Consensus 249 gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~-------------------------------------------- 284 (494)
.. ...+......+|+++||||+++....+...
T Consensus 505 --~q--r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~l~~~i~~~l~~g~q 580 (780)
T 1gm5_A 505 --KQ--REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQ 580 (780)
T ss_dssp -------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSSTHHHHHHHHHHHTTTSCC
T ss_pred --HH--HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccchHHHHHHHHHHHHhcCCc
Confidence 11 111222335688999999976554433321
Q ss_pred --------------------------------------------------------cCCccceeeccccccCCCCCCceE
Q 042373 285 --------------------------------------------------------TNVCNLSIANSVRARGLDEKELEL 308 (494)
Q Consensus 285 --------------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~ 308 (494)
.|+++|||||+++++|+|+|++++
T Consensus 581 vlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~ 660 (780)
T 1gm5_A 581 AFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANV 660 (780)
T ss_dssp BCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCE
T ss_pred EEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCE
Confidence 688999999999999999999999
Q ss_pred EEecCCCC-CHhHHHhhhccCCC---cceEEEEecccCHH
Q 042373 309 VINFDAPN-DYEDYVHHCCQSWL---KSCAFRFISEENAI 344 (494)
Q Consensus 309 VInyd~P~-s~~~yvhR~GRaGr---~G~aitfv~~~~~~ 344 (494)
||+||.|. +...|.||+||+|| .|.|++|+++.+..
T Consensus 661 VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 661 MVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp EEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred EEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 99999996 68888899988665 78899998854433
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=248.98 Aligned_cols=121 Identities=21% Similarity=0.163 Sum_probs=103.7
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----------
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------- 211 (494)
.|+|+|.++++.++.+ ++|+.++||+|||++++++++..+... +.++|||+||++|+.|+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~--------~~~~liv~P~~~L~~q~~~~~~~~~~~~ 79 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKY--------GGKVLMLAPTKPLVLQHAESFRRLFNLP 79 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHS--------CSCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcC--------CCeEEEEECCHHHHHHHHHHHHHHhCcc
Confidence 6999999999999999 999999999999999999999887621 66899999999999987
Q ss_pred ---------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCC
Q 042373 212 ---------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPD 264 (494)
Q Consensus 212 ---------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~ 264 (494)
+||++|...+..+ ...+.++++||+||||++........+...+....+.
T Consensus 80 ~~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~---~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T 1wp9_A 80 PEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAG---RISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN 156 (494)
T ss_dssp GGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTT---SCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSS
T ss_pred hhheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcC---CcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCC
Confidence 6888888877653 3468899999999999998765556666666666778
Q ss_pred CcEEEecCCCC
Q 042373 265 RQAVLFSPTFP 275 (494)
Q Consensus 265 ~Q~ilfSAT~~ 275 (494)
.+++++|||+.
T Consensus 157 ~~~l~lTaTp~ 167 (494)
T 1wp9_A 157 PLVIGLTASPG 167 (494)
T ss_dssp CCEEEEESCSC
T ss_pred CeEEEEecCCC
Confidence 99999999986
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.95 E-value=9.2e-28 Score=288.58 Aligned_cols=207 Identities=20% Similarity=0.212 Sum_probs=164.8
Q ss_pred CCCCCChhHHHHHHHHH-cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCC--CCCCCCeEEEEccchhHHHhh-----
Q 042373 140 NHENPVAIQAPASALII-SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVV--PGDDSPVGLVMAPTGELVRQQ----- 211 (494)
Q Consensus 140 g~~~ptpiQ~~aip~il-~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~--~~~~~p~aLIl~PTreLa~Qi----- 211 (494)
||++++++|++++|.++ +++|++++||||||||++|.+|+++.+....... ....+.++||++|+|+||.|+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 89999999999999988 5789999999999999999999999997643221 122367899999999999998
Q ss_pred -------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHH-
Q 042373 212 -------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQ- 259 (494)
Q Consensus 212 -------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~- 259 (494)
+||+++ +.+.+.......+++|++||+||+|.+-+ .....++.++.
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkl-d~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~r 233 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKW-DIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVAR 233 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHH-HHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHH-HHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHH
Confidence 799997 55544333233578999999999997765 45555555543
Q ss_pred ------hhcCCCcEEEecCCCChHHHHHHHh-------------------------------------------------
Q 042373 260 ------NIRPDRQAVLFSPTFPPRVEILARK------------------------------------------------- 284 (494)
Q Consensus 260 ------~l~~~~Q~ilfSAT~~~~v~~l~~~------------------------------------------------- 284 (494)
..++..|+|++|||+|+. +.+++.
T Consensus 234 l~~~~~~~~~~~riI~LSATl~N~-~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 312 (1724)
T 4f92_B 234 AIRNIEMTQEDVRLIGLSATLPNY-EDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIM 312 (1724)
T ss_dssp HHHHHHHHTCCCEEEEEECSCTTH-HHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCcEEEEecccCCH-HHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHH
Confidence 346789999999999853 334432
Q ss_pred --------------------------------------------------------------------------------
Q 042373 285 -------------------------------------------------------------------------------- 284 (494)
Q Consensus 285 -------------------------------------------------------------------------------- 284 (494)
T Consensus 313 ~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~ 392 (1724)
T 4f92_B 313 EHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVD 392 (1724)
T ss_dssp TCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHH
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHH
Confidence
Q ss_pred ---------cCCccceeeccccccCCCCCCceEEEe----cC------CCCCHhHHHhhhccCCC-----cceEEEEecc
Q 042373 285 ---------TNVCNLSIANSVRARGLDEKELELVIN----FD------APNDYEDYVHHCCQSWL-----KSCAFRFISE 340 (494)
Q Consensus 285 ---------~g~~~ILVaTdv~~rGlDi~~v~~VIn----yd------~P~s~~~yvhR~GRaGr-----~G~aitfv~~ 340 (494)
.|.++|||||+++++|+|+|.+.+||. || .|-+..+|+||+||||| .|.+|.++++
T Consensus 393 R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~ 472 (1724)
T 4f92_B 393 RTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSH 472 (1724)
T ss_dssp HHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEES
T ss_pred HHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecc
Confidence 799999999999999999999999995 54 35689999999999998 4678888887
Q ss_pred cCHHHHHHH
Q 042373 341 ENAIYATDL 349 (494)
Q Consensus 341 ~~~~~~~~i 349 (494)
.+..+...+
T Consensus 473 ~~~~~~~~l 481 (1724)
T 4f92_B 473 GELQYYLSL 481 (1724)
T ss_dssp TTCCHHHHH
T ss_pred hhHHHHHHH
Confidence 766554433
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-28 Score=272.95 Aligned_cols=213 Identities=19% Similarity=0.236 Sum_probs=169.7
Q ss_pred CCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC-CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCC
Q 042373 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDS 195 (494)
Q Consensus 117 P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g-rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~ 195 (494)
+.++..|.++++++.+.+.+...+ ..|+++|+++|+.++.+ ++++++||||||||+ ++|++....... ...+
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~----~~~g 140 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP----HLEN 140 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG----GGGT
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc----cCCC
Confidence 456789999999999999999887 78999999999998865 679999999999999 677763322110 1115
Q ss_pred CeEEEEccchhHHHhh----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcc
Q 042373 196 PVGLVMAPTGELVRQQ----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDE 241 (494)
Q Consensus 196 p~aLIl~PTreLa~Qi----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDE 241 (494)
++++|++|+|+|+.|+ +|||++.+.+... ..+.++++|||||
T Consensus 141 ~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~----~~l~~~~~lIlDE 216 (773)
T 2xau_A 141 TQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMED----HDLSRYSCIILDE 216 (773)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHS----TTCTTEEEEEECS
T ss_pred ceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhC----ccccCCCEEEecC
Confidence 6799999999999887 6899998877653 3588999999999
Q ss_pred cch-hcccCCh-hHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh-----------------------------------
Q 042373 242 ADR-MFDMGFE-PQITRIVQNIRPDRQAVLFSPTFPPRVEILARK----------------------------------- 284 (494)
Q Consensus 242 aD~-ml~~gf~-~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~----------------------------------- 284 (494)
+|. +++..+. ..+..+. ...++.|+++||||++.. .++..
T Consensus 217 ah~R~ld~d~~~~~l~~l~-~~~~~~~iIl~SAT~~~~--~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~ 293 (773)
T 2xau_A 217 AHERTLATDILMGLLKQVV-KRRPDLKIIIMSATLDAE--KFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRT 293 (773)
T ss_dssp GGGCCHHHHHHHHHHHHHH-HHCTTCEEEEEESCSCCH--HHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHH-HhCCCceEEEEeccccHH--HHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHH
Confidence 995 7764332 2333333 344689999999998632 11111
Q ss_pred -------------------------------------------------------------------c------CCccce
Q 042373 285 -------------------------------------------------------------------T------NVCNLS 291 (494)
Q Consensus 285 -------------------------------------------------------------------~------g~~~IL 291 (494)
. |..+||
T Consensus 294 l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVl 373 (773)
T 2xau_A 294 VLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVV 373 (773)
T ss_dssp HHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEE
T ss_pred HHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEE
Confidence 2 467899
Q ss_pred eeccccccCCCCCCceEEEecCC------------------CCCHhHHHhhhccCCC--cceEEEEecccCH
Q 042373 292 IANSVRARGLDEKELELVINFDA------------------PNDYEDYVHHCCQSWL--KSCAFRFISEENA 343 (494)
Q Consensus 292 VaTdv~~rGlDi~~v~~VInyd~------------------P~s~~~yvhR~GRaGr--~G~aitfv~~~~~ 343 (494)
|||+++++|||||+|++||+|++ |.+..+|+||+||+|| .|.||.|+++.+.
T Consensus 374 VAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 374 ISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAF 445 (773)
T ss_dssp EECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHH
T ss_pred EeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHh
Confidence 99999999999999999999888 8999999999999998 7999999987654
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.7e-28 Score=253.66 Aligned_cols=168 Identities=14% Similarity=0.127 Sum_probs=128.4
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------------------hhhhH-
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------------------VRRGR- 216 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------------------~TPgr- 216 (494)
.|+|+++++|||||||++|++|+++++... ++++|||+||++||.|+ +||++
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~--------g~~~lvl~Pt~~La~Q~~~~~~~~~v~~~~~~~~~~~~~~~~ 72 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK--------RLRTVILAPTRVVASEMYEALRGEPIRYMTPAVQSERTGNEI 72 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT--------TCCEEEEESSHHHHHHHHHHTTTSCEEEC---------CCCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC--------CCCEEEECcHHHHHHHHHHHhCCCeEEEEecCccccCCCCce
Confidence 479999999999999999999999777643 67999999999999998 22322
Q ss_pred --------HHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhh-cCCCcEEEecCCCChHHHHHHHh---
Q 042373 217 --------MIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI-RPDRQAVLFSPTFPPRVEILARK--- 284 (494)
Q Consensus 217 --------l~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l-~~~~Q~ilfSAT~~~~v~~l~~~--- 284 (494)
+...+.. ...++++.+||+||||++ ..++..+...+.... ++.+|+++||||+++.+..+...
T Consensus 73 ~~~~~~~~l~~~l~~----~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~ 147 (431)
T 2v6i_A 73 VDFMCHSTFTMKLLQ----GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPSNSP 147 (431)
T ss_dssp EEEEEHHHHHHHHHH----TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCCSSC
T ss_pred EEEEchHHHHHHHhc----CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCCCCc
Confidence 2222222 123789999999999997 554555555555443 56899999999987654333221
Q ss_pred -------------------------------------------------------------------cCCccceeecccc
Q 042373 285 -------------------------------------------------------------------TNVCNLSIANSVR 297 (494)
Q Consensus 285 -------------------------------------------------------------------~g~~~ILVaTdv~ 297 (494)
.|+.+|||||+++
T Consensus 148 i~~~~~~~~~~~~~~~~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~v~ 227 (431)
T 2v6i_A 148 IIDEETRIPDKAWNSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWDFVITTDIS 227 (431)
T ss_dssp CEEEECCCCSSCCSSCCHHHHSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTTHHHHTTHHHHSCCSEEEECGGG
T ss_pred eeeccccCCHHHHHHHHHHHHcCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCccHHHHHHhhcCCCCeEEEECchH
Confidence 7899999999999
Q ss_pred ccCCCCCCceE-----------------EEecCCCCCHhHHHhhhccCCCcc----eEEEEe
Q 042373 298 ARGLDEKELEL-----------------VINFDAPNDYEDYVHHCCQSWLKS----CAFRFI 338 (494)
Q Consensus 298 ~rGlDi~~v~~-----------------VInyd~P~s~~~yvhR~GRaGr~G----~aitfv 338 (494)
++|+|+| +.+ ||+|+.|.+..+|+||+||+||.| .+++|.
T Consensus 228 e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 228 EMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp GTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred HcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 9999999 544 689999999999999999988754 445555
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-27 Score=261.40 Aligned_cols=206 Identities=15% Similarity=0.107 Sum_probs=151.8
Q ss_pred cccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc
Q 042373 123 WRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202 (494)
Q Consensus 123 f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~ 202 (494)
|..+. ....+..+..+++ | .|.......+.|++++++||||||||+ +++..+... +.++|++
T Consensus 125 fp~~e-~~d~l~~i~dl~~--p--~~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~---------~~gl~l~ 186 (677)
T 3rc3_A 125 FPVLD-CKDDLRKISDLRI--P--PNWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA---------KSGVYCG 186 (677)
T ss_dssp CGGGG-CHHHHHHHTBCCC--G--GGGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS---------SSEEEEE
T ss_pred CCCcC-CHHHHHHHhhccC--h--hhhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc---------CCeEEEe
Confidence 43333 4444555544433 3 344445567899999999999999998 555555542 3469999
Q ss_pred cchhHHHhh----------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHh
Q 042373 203 PTGELVRQQ----------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQN 260 (494)
Q Consensus 203 PTreLa~Qi----------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~ 260 (494)
|||+||.|+ .|||++.+++.........++.+++||+||||+|++.+|...+..++..
T Consensus 187 PtR~LA~Qi~~~l~~~g~~v~lltG~~~~iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~ 266 (677)
T 3rc3_A 187 PLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLG 266 (677)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEECSSCEECCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEECCeeEEecCCCcccceeEecHhHhhhcccCCEEEEecceecCCccchHHHHHHHHc
Confidence 999999998 4666665555432211122467899999999999999999999999998
Q ss_pred hc-CCCcEEEecCCCChHHHHHHHh-------------------------------------------------------
Q 042373 261 IR-PDRQAVLFSPTFPPRVEILARK------------------------------------------------------- 284 (494)
Q Consensus 261 l~-~~~Q~ilfSAT~~~~v~~l~~~------------------------------------------------------- 284 (494)
++ ...|++++|||. +.+..++..
T Consensus 267 l~~~~i~il~~SAT~-~~i~~l~~~~~~~~~v~~~~r~~~l~~~~~~l~~l~~~~~g~iIf~~s~~~ie~la~~L~~~g~ 345 (677)
T 3rc3_A 267 LCAEEVHLCGEPAAI-DLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGL 345 (677)
T ss_dssp CCEEEEEEEECGGGH-HHHHHHHHHHTCCEEEEECCCSSCEEECSSCCCSGGGCCTTEEEECSSHHHHHHHHHHHHHTTC
T ss_pred cCccceEEEeccchH-HHHHHHHHhcCCceEEEEeeecchHHHHHHHHHHHHhcCCCCEEEEcCHHHHHHHHHHHHhcCC
Confidence 87 678999999995 334444432
Q ss_pred ----------------------c--CCccceeeccccccCCCCCCceEEEecCC--------------CCCHhHHHhhhc
Q 042373 285 ----------------------T--NVCNLSIANSVRARGLDEKELELVINFDA--------------PNDYEDYVHHCC 326 (494)
Q Consensus 285 ----------------------~--g~~~ILVaTdv~~rGlDi~~v~~VInyd~--------------P~s~~~yvhR~G 326 (494)
. |..+|||||+++++|||+ +|++||+|++ |.+..+|+||+|
T Consensus 346 ~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~G 424 (677)
T 3rc3_A 346 ESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAG 424 (677)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHT
T ss_pred CeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhc
Confidence 4 889999999999999999 9999999999 789999999999
Q ss_pred cCCCcce-----EEEEecccCHHHHHH
Q 042373 327 QSWLKSC-----AFRFISEENAIYATD 348 (494)
Q Consensus 327 RaGr~G~-----aitfv~~~~~~~~~~ 348 (494)
|+||.|. .++++.+.+...+..
T Consensus 425 RAGR~g~~g~~G~v~~l~~~d~~~~~~ 451 (677)
T 3rc3_A 425 RAGRFSSRFKEGEVTTMNHEDLSLLKE 451 (677)
T ss_dssp TBTCTTSSCSSEEEEESSTTHHHHHHH
T ss_pred CCCCCCCCCCCEEEEEEecchHHHHHH
Confidence 9988661 333444444444333
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-26 Score=264.74 Aligned_cols=201 Identities=16% Similarity=0.180 Sum_probs=158.3
Q ss_pred CCCCHHHHHHH-HhCCCCCCChhHHHHHHHHHc----CC--CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 126 TGLTTKILETF-SKLNHENPVAIQAPASALIIS----GL--DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 126 l~L~~~ll~~l-~~~g~~~ptpiQ~~aip~il~----gr--dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
++++....+.+ ..++|+ |||+|.++|+.++. |+ |+|++++||||||++|+++++..+.. ++++
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---------g~~v 655 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---------HKQV 655 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---------TCEE
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---------CCeE
Confidence 45666666666 457885 79999999999987 66 99999999999999999999887642 6799
Q ss_pred EEEccchhHHHhhh---------------------hh---hHHHHHHHhcCc-----------ceecccceEEEEEcccc
Q 042373 199 LVMAPTGELVRQQV---------------------RR---GRMIDLLCKNGV-----------KITNLTRVTYLVLDEAD 243 (494)
Q Consensus 199 LIl~PTreLa~Qi~---------------------TP---grl~dll~~~~~-----------~~~~l~~l~~lVlDEaD 243 (494)
|||+||++||.|+. +. ...+..+..+.. +.+.++++.+||+||||
T Consensus 656 lvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH 735 (1151)
T 2eyq_A 656 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEH 735 (1151)
T ss_dssp EEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGG
T ss_pred EEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEEechH
Confidence 99999999999981 00 011111211111 12457899999999999
Q ss_pred hhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh---------------------------------------
Q 042373 244 RMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK--------------------------------------- 284 (494)
Q Consensus 244 ~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~--------------------------------------- 284 (494)
++ ......++..++..+++++||||+++....++..
T Consensus 736 ~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~~il~~l~ 810 (1151)
T 2eyq_A 736 RF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREIL 810 (1151)
T ss_dssp GS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHHHHHHHHHHT
T ss_pred hc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHHHHHHHHHHh
Confidence 94 3456677788888999999999987766555443
Q ss_pred ---------------------------------------------------cCCccceeeccccccCCCCCCceEEEecC
Q 042373 285 ---------------------------------------------------TNVCNLSIANSVRARGLDEKELELVINFD 313 (494)
Q Consensus 285 ---------------------------------------------------~g~~~ILVaTdv~~rGlDi~~v~~VInyd 313 (494)
.|+++|||||+++++|||+|++++||+++
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~ 890 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 890 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeC
Confidence 78999999999999999999999999999
Q ss_pred CC-CCHhHHHhhhccCCC---cceEEEEeccc
Q 042373 314 AP-NDYEDYVHHCCQSWL---KSCAFRFISEE 341 (494)
Q Consensus 314 ~P-~s~~~yvhR~GRaGr---~G~aitfv~~~ 341 (494)
.+ .++.+|+||+||+|| .|.||+|+.+.
T Consensus 891 ~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 891 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 84 589999999999766 67899888765
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-26 Score=239.86 Aligned_cols=176 Identities=18% Similarity=0.161 Sum_probs=142.1
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----------
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------- 211 (494)
.|+|+|.++++.++.+++++++++||+|||++|++++... +.++|||+||++|+.|+
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~ 160 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIFGEEY 160 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGGCGGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhCCCcc
Confidence 7999999999999999999999999999999999998764 45799999999999997
Q ss_pred ----------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCC
Q 042373 212 ----------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFP 275 (494)
Q Consensus 212 ----------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~ 275 (494)
+||+.+...+.. ...++.+||+||||++...+|.. ++..+ +..+++++|||+.
T Consensus 161 v~~~~g~~~~~~~Ivv~T~~~l~~~~~~------~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lSATp~ 229 (472)
T 2fwr_A 161 VGEFSGRIKELKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLTATFE 229 (472)
T ss_dssp EEEBSSSCBCCCSEEEEEHHHHHHTHHH------HTTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEEEEESCCC
T ss_pred eEEECCCcCCcCCEEEEEcHHHHHHHHH------hcCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEEEEecCcc
Confidence 566665544432 12468999999999999877654 44444 4678999999985
Q ss_pred h-------------------HHHH--------------------------------------------------------
Q 042373 276 P-------------------RVEI-------------------------------------------------------- 280 (494)
Q Consensus 276 ~-------------------~v~~-------------------------------------------------------- 280 (494)
. ....
T Consensus 230 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 309 (472)
T 2fwr_A 230 REDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMA 309 (472)
T ss_dssp CTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTT
T ss_pred CCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHH
Confidence 1 0000
Q ss_pred ---------------------------------HHHh-------------------------------------------
Q 042373 281 ---------------------------------LARK------------------------------------------- 284 (494)
Q Consensus 281 ---------------------------------l~~~------------------------------------------- 284 (494)
+...
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~~R~~~~~~ 389 (472)
T 2fwr_A 310 SGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEG 389 (472)
T ss_dssp TCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhCcceeeCCCCHHHHHHHHHH
Confidence 0000
Q ss_pred --cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc------eEEEEeccc
Q 042373 285 --TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS------CAFRFISEE 341 (494)
Q Consensus 285 --~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G------~aitfv~~~ 341 (494)
.|.++|||||+++++|+|+|++++||+||.|.+...|+||+||+||.| .+|.|++..
T Consensus 390 F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 390 FRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp HHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred HhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 689999999999999999999999999999999999999999977744 456677754
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-26 Score=245.33 Aligned_cols=180 Identities=14% Similarity=0.046 Sum_probs=145.5
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----------
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---------- 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---------- 211 (494)
..|+|+|.++++.++.++|++++++||||||++|++++...+... ++++|||+||++|+.|+
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--------~~~vlvl~P~~~L~~Q~~~~~~~~~~~ 183 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--------EGKILIIVPTTALTTQMADDFVDYRLF 183 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC--------SSEEEEEESSHHHHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC--------CCeEEEEECcHHHHHHHHHHHHHhhcC
Confidence 489999999999999999999999999999999999999887532 45899999999999998
Q ss_pred --------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCC
Q 042373 212 --------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDR 265 (494)
Q Consensus 212 --------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~ 265 (494)
+||+.|. .. ....+.++.+||+||||++.. ..+..++..+++..
T Consensus 184 ~~~~v~~~~~~~~~~~~~~~~~~I~i~T~~~l~----~~--~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~ 253 (510)
T 2oca_A 184 SHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVV----KQ--PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCM 253 (510)
T ss_dssp CGGGEEECGGGCCTTGGGCTTCSEEEEEHHHHT----TS--CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCC
T ss_pred CccceEEEecCCccccccccCCcEEEEeHHHHh----hc--hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCc
Confidence 3444321 11 113478899999999999875 56778888888889
Q ss_pred cEEEecCCCChHHHH--------------------------------------------------HHH---h--------
Q 042373 266 QAVLFSPTFPPRVEI--------------------------------------------------LAR---K-------- 284 (494)
Q Consensus 266 Q~ilfSAT~~~~v~~--------------------------------------------------l~~---~-------- 284 (494)
++++||||++..... +.. .
T Consensus 254 ~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (510)
T 2oca_A 254 FKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRN 333 (510)
T ss_dssp EEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHH
T ss_pred EEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHH
Confidence 999999997543100 000 0
Q ss_pred -------------------------------------------------------------cCCccceeec-cccccCCC
Q 042373 285 -------------------------------------------------------------TNVCNLSIAN-SVRARGLD 302 (494)
Q Consensus 285 -------------------------------------------------------------~g~~~ILVaT-dv~~rGlD 302 (494)
.|..+||||| +++++|+|
T Consensus 334 ~~l~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 334 KWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccc
Confidence 7889999999 99999999
Q ss_pred CCCceEEEecCCCCCHhHHHhhhccCCCc---ceEEEEec
Q 042373 303 EKELELVINFDAPNDYEDYVHHCCQSWLK---SCAFRFIS 339 (494)
Q Consensus 303 i~~v~~VInyd~P~s~~~yvhR~GRaGr~---G~aitfv~ 339 (494)
+|++++||+|+.|.+...|+||+||+||. |.++++++
T Consensus 414 ip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 414 VKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999996663 33444544
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-24 Score=235.09 Aligned_cols=130 Identities=18% Similarity=0.160 Sum_probs=78.4
Q ss_pred CCChhHHHHHHHHHc----C-CCEEEEcCCCCCchhhhHHHHHHHHHcCC-CCCCCCCCCeEEEEccchhHHHhh-----
Q 042373 143 NPVAIQAPASALIIS----G-LDSVAITETGSGKTLAFLLPMLRHIWEQP-PVVPGDDSPVGLVMAPTGELVRQQ----- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~----g-rdvi~~a~TGSGKTlafllpil~~l~~~~-~~~~~~~~p~aLIl~PTreLa~Qi----- 211 (494)
.|+|+|.++++.++. | ++++++++||||||++++. ++..+.... .......++++|||+||++|+.|+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 799999999999886 4 6699999999999999655 444444322 111111378999999999999996
Q ss_pred -----------------------hhhhHHHHHHHhcC-cceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcE
Q 042373 212 -----------------------VRRGRMIDLLCKNG-VKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQA 267 (494)
Q Consensus 212 -----------------------~TPgrl~dll~~~~-~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ 267 (494)
+||++|...+.... ...+...++++||+||||++...+ ...+..++..++ ..++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~-~~~~ 334 (590)
T 3h1t_A 257 TPFGDARHKIEGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFE-PAFQ 334 (590)
T ss_dssp TTTCSSEEECCC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHST-TSEE
T ss_pred HhcchhhhhhhccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCC-cceE
Confidence 68888877654221 122346678999999999998643 245566777774 4789
Q ss_pred EEecCCCC
Q 042373 268 VLFSPTFP 275 (494)
Q Consensus 268 ilfSAT~~ 275 (494)
++||||..
T Consensus 335 l~lTATP~ 342 (590)
T 3h1t_A 335 IGMTATPL 342 (590)
T ss_dssp EEEESSCS
T ss_pred EEeccccc
Confidence 99999954
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=182.48 Aligned_cols=145 Identities=15% Similarity=0.158 Sum_probs=115.4
Q ss_pred HHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 131 KILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 131 ~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
.+.+.+.......++++|.++++.+..|++++++|+||||||.+|.++++..+..... ..+..+|+++|||+|+.|
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----~~~~~~l~~~p~~~la~q 124 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----AAECNIVVTQPRRISAVS 124 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----GGGCEEEEEESSHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----CCceEEEEeccchHHHHH
Confidence 3333333333446799999999999999999999999999999999999988765431 125689999999999998
Q ss_pred h-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchh-cccCCh-hH
Q 042373 211 Q-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRM-FDMGFE-PQ 253 (494)
Q Consensus 211 i-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~m-l~~gf~-~~ 253 (494)
+ +|||+|.+++.. .++++++|||||||++ ++++|. ..
T Consensus 125 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~------~l~~~~~lVlDEah~~~~~~~~~~~~ 198 (235)
T 3llm_A 125 VAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA------GIRGISHVIVDEIHERDINTDFLLVV 198 (235)
T ss_dssp HHHHHHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH------CCTTCCEEEECCTTSCCHHHHHHHHH
T ss_pred HHHHHHHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh------hhcCCcEEEEECCccCCcchHHHHHH
Confidence 7 799999999875 4889999999999997 888887 45
Q ss_pred HHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCc
Q 042373 254 ITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVC 288 (494)
Q Consensus 254 i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~ 288 (494)
+..++... +++|+++||||++... +++.-+..
T Consensus 199 l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~ 230 (235)
T 3llm_A 199 LRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNC 230 (235)
T ss_dssp HHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSC
T ss_pred HHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCC
Confidence 56666554 6899999999999876 55443333
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-19 Score=204.15 Aligned_cols=125 Identities=16% Similarity=0.158 Sum_probs=83.2
Q ss_pred CCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh-------
Q 042373 142 ENPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV------- 212 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~------- 212 (494)
..|+|+|..++..++.. ..+|++.+||+|||+.++..+...+.... ..++|||||+ .|+.|+.
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-------~~rvLIVvP~-sLl~Qw~~E~~~~f 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-------AERVLIIVPE-TLQHQWLVEMLRRF 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-------CCCEEEECCT-TTHHHHHHHHHHHS
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-------CCeEEEEeCH-HHHHHHHHHHHHHh
Confidence 47999999999988864 58999999999999999887776664321 3479999999 9998871
Q ss_pred -------hhhHHH--------------------HHHHhcC--cceecccceEEEEEcccchhcccCChh-HHHHHHHhh-
Q 042373 213 -------RRGRMI--------------------DLLCKNG--VKITNLTRVTYLVLDEADRMFDMGFEP-QITRIVQNI- 261 (494)
Q Consensus 213 -------TPgrl~--------------------dll~~~~--~~~~~l~~l~~lVlDEaD~ml~~gf~~-~i~~Il~~l- 261 (494)
...+.. +.+.... ...+...++.+||+||||++...+... ....++..+
T Consensus 224 ~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 111111 1111110 011224478999999999997654321 223333333
Q ss_pred cCCCcEEEecCCC
Q 042373 262 RPDRQAVLFSPTF 274 (494)
Q Consensus 262 ~~~~Q~ilfSAT~ 274 (494)
...++++++|||.
T Consensus 304 ~~~~~~L~LTATP 316 (968)
T 3dmq_A 304 EHVPGVLLLTATP 316 (968)
T ss_dssp TTCSSEEESCSSC
T ss_pred hcCCcEEEEEcCC
Confidence 3456789999995
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.6e-20 Score=173.23 Aligned_cols=132 Identities=16% Similarity=0.110 Sum_probs=96.8
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh-h------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ-Q------ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q-i------ 211 (494)
.....|+++|.++++.++.++++++++|||+|||++|+++++..+...... ..++++||++||++|+.| +
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~---~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT---TCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc---cCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 445689999999999999999999999999999999999999887543211 125689999999999998 3
Q ss_pred --------------------------------hhhhHHHHHHHhcCc---ceecccceEEEEEcccchhcccCChhHHHH
Q 042373 212 --------------------------------VRRGRMIDLLCKNGV---KITNLTRVTYLVLDEADRMFDMGFEPQITR 256 (494)
Q Consensus 212 --------------------------------~TPgrl~dll~~~~~---~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~ 256 (494)
+||++|..++..... ....+.++++||+||||++...++...+..
T Consensus 106 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 106 FLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 185 (216)
T ss_dssp HHTTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHH
T ss_pred HhccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHH
Confidence 678888888775421 114578999999999999998777666543
Q ss_pred HH-Hhh-c------------CCCcEEEecCC
Q 042373 257 IV-QNI-R------------PDRQAVLFSPT 273 (494)
Q Consensus 257 Il-~~l-~------------~~~Q~ilfSAT 273 (494)
.+ ... + +..+++++|||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 22 211 1 67899999998
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.6e-19 Score=203.55 Aligned_cols=120 Identities=18% Similarity=0.093 Sum_probs=86.2
Q ss_pred CCChhHHHHHHHHHc--------------CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHH
Q 042373 143 NPVAIQAPASALIIS--------------GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELV 208 (494)
Q Consensus 143 ~ptpiQ~~aip~il~--------------grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa 208 (494)
.|+|+|..|++.++. +++.+++++||||||+++ ++++..+... ...+++|||+|+++|+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~------~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL------DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC------TTCCEEEEEECGGGCC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc------CCCceEEEEeCcHHHH
Confidence 599999999999886 479999999999999997 6777555321 1146899999999999
Q ss_pred Hhh----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHH
Q 042373 209 RQQ----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQI 254 (494)
Q Consensus 209 ~Qi----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i 254 (494)
.|+ +||++|.+++..... ...++...+||+||||++...+ ..
T Consensus 344 ~Q~~~~f~~f~~~~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~-~~~~~~~~lvIiDEAHrs~~~~---~~ 419 (1038)
T 2w00_A 344 YQTMKEYQRFSPDSVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESD-LPVYNQQVVFIFDECHRSQFGE---AQ 419 (1038)
T ss_dssp HHHHHHHHTTSTTCSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCC-CGGGGSCEEEEEESCCTTHHHH---HH
T ss_pred HHHHHHHHHhcccccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccc-hhccccccEEEEEccchhcchH---HH
Confidence 997 677888777664321 1245678999999999976322 23
Q ss_pred HHHHHhhcCCCcEEEecCCC
Q 042373 255 TRIVQNIRPDRQAVLFSPTF 274 (494)
Q Consensus 255 ~~Il~~l~~~~Q~ilfSAT~ 274 (494)
..|+..++ ..++++||||+
T Consensus 420 ~~I~~~~p-~a~~lgfTATP 438 (1038)
T 2w00_A 420 KNLKKKFK-RYYQFGFTGTP 438 (1038)
T ss_dssp HHHHHHCS-SEEEEEEESSC
T ss_pred HHHHHhCC-cccEEEEeCCc
Confidence 33444442 35556666654
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=183.85 Aligned_cols=116 Identities=16% Similarity=0.236 Sum_probs=77.5
Q ss_pred CCCChhHHHHHHHH----HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------
Q 042373 142 ENPVAIQAPASALI----ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~i----l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------ 211 (494)
..|+|+|.+++..+ ..|+++|+..+||+|||+.++. ++..+.... ....+|||||+ .|+.|+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~~------~~~~~LIv~P~-~l~~qw~~e~~~ 107 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKEN------ELTPSLVICPL-SVLKNWEEELSK 107 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHTT------CCSSEEEEECS-TTHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhcC------CCCCEEEEccH-HHHHHHHHHHHH
Confidence 36999999999876 3678999999999999999755 444444321 14579999995 587776
Q ss_pred --------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCC
Q 042373 212 --------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDR 265 (494)
Q Consensus 212 --------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~ 265 (494)
+|++++..... +....+++||+||||++...+ ......+..++ ..
T Consensus 108 ~~~~~~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~------l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~ 178 (500)
T 1z63_A 108 FAPHLRFAVFHEDRSKIKLEDYDIILTTYAVLLRDTR------LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SK 178 (500)
T ss_dssp HCTTSCEEECSSSTTSCCGGGSSEEEEEHHHHTTCHH------HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EE
T ss_pred HCCCceEEEEecCchhccccCCcEEEeeHHHHhccch------hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cC
Confidence 23333221111 123467999999999987543 23444444452 34
Q ss_pred cEEEecCCC
Q 042373 266 QAVLFSPTF 274 (494)
Q Consensus 266 Q~ilfSAT~ 274 (494)
+.+++|||.
T Consensus 179 ~~l~LTaTP 187 (500)
T 1z63_A 179 YRIALTGTP 187 (500)
T ss_dssp EEEEECSSC
T ss_pred cEEEEecCC
Confidence 567777775
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=193.07 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=59.3
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCC-----CCCHhHHHhhhccCCC--cceEEEEecccCHHHHHHHHH
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDA-----PNDYEDYVHHCCQSWL--KSCAFRFISEENAIYATDLVK 351 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~-----P~s~~~yvhR~GRaGr--~G~aitfv~~~~~~~~~~i~~ 351 (494)
.|.++|||||+++++|+|+|+|++||+||. |.+..+|+||+||+|| .|.+++|+++.+......|.+
T Consensus 487 ~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 487 LGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp TTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCCHHHHHHHHH
T ss_pred cCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCCCEEEEEEcCCCHHHHHHHHH
Confidence 478999999999999999999999999997 9999999999999887 689999999887665555544
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.1e-18 Score=186.50 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=59.5
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCC-----CCCHhHHHhhhccCCC--cceEEEEecccCHHHHHHHHH
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDA-----PNDYEDYVHHCCQSWL--KSCAFRFISEENAIYATDLVK 351 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~-----P~s~~~yvhR~GRaGr--~G~aitfv~~~~~~~~~~i~~ 351 (494)
.|.++|||||+++++|+|+|+|++||+||. |.+..+|+||+||+|| .|.+++|+++.+......|.+
T Consensus 493 ~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~~~~~~i~~ 566 (661)
T 2d7d_A 493 LGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITKSMEIAINE 566 (661)
T ss_dssp HTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTSTTCEEEEECSSCCHHHHHHHHH
T ss_pred cCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCCCCEEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999999999997 9999999999999887 799999999887665555443
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-17 Score=180.36 Aligned_cols=61 Identities=26% Similarity=0.312 Sum_probs=54.2
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+|. .|+++|....-.+..|+ |+...||+|||+++.+|++-..+. |..+.|++||+.||.|-
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---------G~~vhVvT~ndyLA~rd 132 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---------GKGVHLVTVNDYLARRD 132 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---------SSCEEEEESSHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---------CCceEEEeccHHHHHhH
Confidence 666 69999999999999998 899999999999999999866543 66799999999999986
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.72 E-value=5.9e-18 Score=167.79 Aligned_cols=119 Identities=14% Similarity=0.052 Sum_probs=97.3
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----------
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---------- 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---------- 211 (494)
-+|+|+|.++++.++.+++.+++++||+|||+++++++...+... +.++|||+||++|+.|+
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--------~~~~lil~Pt~~L~~q~~~~l~~~~~~ 183 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--------EGKILIIVPTTALTTQMADDFVDYRLF 183 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC--------SSEEEEECSSHHHHHHHHHHHHHHTSC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC--------CCeEEEEECCHHHHHHHHHHHHHhccc
Confidence 389999999999999999999999999999999999888776532 34899999999999997
Q ss_pred --------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCC
Q 042373 212 --------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDR 265 (494)
Q Consensus 212 --------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~ 265 (494)
+||+++... ....+.++++||+||||++.. +.+..++..++..+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~------~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~ 253 (282)
T 1rif_A 184 SHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQ------PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCM 253 (282)
T ss_dssp CGGGEEECSTTCSSTTCCCTTCSEEEECHHHHTTS------CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCC
T ss_pred ccceEEEEeCCCcchhhhccCCcEEEEchHHHHhh------HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCC
Confidence 344433211 112467899999999999984 47888888888899
Q ss_pred cEEEecCCCChHH
Q 042373 266 QAVLFSPTFPPRV 278 (494)
Q Consensus 266 Q~ilfSAT~~~~v 278 (494)
++++||||++...
T Consensus 254 ~~l~lSATp~~~~ 266 (282)
T 1rif_A 254 FKFGLSGSLRDGK 266 (282)
T ss_dssp EEEEECSSCCTTS
T ss_pred eEEEEeCCCCCcc
Confidence 9999999998654
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.2e-16 Score=143.45 Aligned_cols=105 Identities=28% Similarity=0.305 Sum_probs=78.8
Q ss_pred CcEEEecCCCChHHHHHHH---hcCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEe
Q 042373 265 RQAVLFSPTFPPRVEILAR---KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFI 338 (494)
Q Consensus 265 ~Q~ilfSAT~~~~v~~l~~---~~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv 338 (494)
..+..+.+.++..-...+. +.|.++|||||+++++|+|+|++++||+||+|.+..+|+||+||+|| .|.+++|+
T Consensus 71 ~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 150 (185)
T 2jgn_A 71 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFF 150 (185)
T ss_dssp CCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEE
T ss_pred CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEE
Confidence 4455555555443221111 27899999999999999999999999999999999999999999655 68999999
Q ss_pred cccCHHHHHHHHHHHHhccCcchHHHHHHHH
Q 042373 339 SEENAIYATDLVKAFELSELVVRDDLKAVAD 369 (494)
Q Consensus 339 ~~~~~~~~~~i~~~l~~~~~~vp~~l~~~~~ 369 (494)
++.+...+..+.+.++...+++|++|..++.
T Consensus 151 ~~~~~~~~~~l~~~l~~~~~~~~~~l~~~a~ 181 (185)
T 2jgn_A 151 NERNINITKDLLDLLVEAKQEVPSWLENMAY 181 (185)
T ss_dssp CGGGGGGHHHHHHHHHHTTCCCCHHHHHHHC
T ss_pred chhhHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 9999999999999999999999999988874
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=142.63 Aligned_cols=84 Identities=25% Similarity=0.356 Sum_probs=77.6
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEeccc-CHHHHHHHHHHHHhccCcc
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEE-NAIYATDLVKAFELSELVV 360 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~-~~~~~~~i~~~l~~~~~~v 360 (494)
.|.++|||||++++||+|++++++|||||+|.+...|+||+||+|| .|.+++|+++. +..++..|.+.++..++.+
T Consensus 102 ~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~~~~~~~ 181 (191)
T 2p6n_A 102 EGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKV 181 (191)
T ss_dssp HTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHHHHTTCCC
T ss_pred cCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHHHHccCcC
Confidence 6889999999999999999999999999999999999999999665 67899999986 7889999999999999999
Q ss_pred hHHHHHHH
Q 042373 361 RDDLKAVA 368 (494)
Q Consensus 361 p~~l~~~~ 368 (494)
|++|.+++
T Consensus 182 p~~l~~~~ 189 (191)
T 2p6n_A 182 PPVLQVLH 189 (191)
T ss_dssp CHHHHSTT
T ss_pred CHHHHhhc
Confidence 99987654
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-15 Score=168.02 Aligned_cols=54 Identities=11% Similarity=0.223 Sum_probs=48.3
Q ss_pred ccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc-----eEEEEeccc
Q 042373 288 CNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS-----CAFRFISEE 341 (494)
Q Consensus 288 ~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G-----~aitfv~~~ 341 (494)
..+|++|.+++.|||++.+++||+||.|.++..++||+||+.|.| .+|.|++..
T Consensus 626 ~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 626 FVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp CCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred eEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 358999999999999999999999999999999999999977644 477788876
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.59 E-value=6e-14 Score=155.02 Aligned_cols=53 Identities=13% Similarity=0.251 Sum_probs=48.0
Q ss_pred cceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc-----eEEEEeccc
Q 042373 289 NLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS-----CAFRFISEE 341 (494)
Q Consensus 289 ~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G-----~aitfv~~~ 341 (494)
.+||+|+++++|||++++++||+||+|.++..|.||+||++|.| .+|.|++..
T Consensus 471 v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 471 IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp EEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred EEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 48999999999999999999999999999999999999977755 577788876
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.58 E-value=5.3e-15 Score=143.60 Aligned_cols=113 Identities=20% Similarity=0.124 Sum_probs=86.1
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----------
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---------- 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---------- 211 (494)
..|+++|.+++..++.+++++++++||+|||++++.++... +..+||++||++|+.|+
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~~~~ 159 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIFGEE 159 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------------CSCEEEEESSHHHHHHHHHHHGGGCGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHHHhCCCC
Confidence 48999999999999999999999999999999998877642 45799999999999886
Q ss_pred -----------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCC
Q 042373 212 -----------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274 (494)
Q Consensus 212 -----------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~ 274 (494)
+|++.+...+.. ...++.+||+||||++....|. .++..+ +..+++++|||.
T Consensus 160 ~v~~~~g~~~~~~~i~v~T~~~l~~~~~~------~~~~~~llIiDEaH~l~~~~~~----~i~~~~-~~~~~l~LSATp 228 (237)
T 2fz4_A 160 YVGEFSGRIKELKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPAESYV----QIAQMS-IAPFRLGLTATF 228 (237)
T ss_dssp GEEEESSSCBCCCSEEEEEHHHHHHTHHH------HTTTCSEEEEECSSCCCTTTHH----HHHHTC-CCSEEEEEEESC
T ss_pred eEEEEeCCCCCcCCEEEEeHHHHHhhHHH------hcccCCEEEEECCccCCChHHH----HHHHhc-cCCEEEEEecCC
Confidence 233333222211 1246899999999999876543 455555 367899999998
Q ss_pred ChH
Q 042373 275 PPR 277 (494)
Q Consensus 275 ~~~ 277 (494)
+..
T Consensus 229 ~r~ 231 (237)
T 2fz4_A 229 ERE 231 (237)
T ss_dssp C--
T ss_pred CCC
Confidence 764
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-15 Score=168.51 Aligned_cols=97 Identities=25% Similarity=0.301 Sum_probs=84.4
Q ss_pred hCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------
Q 042373 138 KLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------ 211 (494)
Q Consensus 138 ~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------ 211 (494)
-+|| .||++|..++|.+++|+ |+.++||||||++|++|++...+. |..++||+||++||.|+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---------G~qv~VvTPTreLA~Qdae~m~~ 142 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---------GKGVHVVTVNDYLARRDAEWMGP 142 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---------CSCCEEEESSHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 3899 99999999999999999 999999999999999999765542 55799999999999997
Q ss_pred -------------------------------hhhhHH-HHHHHhcC---cceeccc---ceEEEEEcccchhc
Q 042373 212 -------------------------------VRRGRM-IDLLCKNG---VKITNLT---RVTYLVLDEADRMF 246 (494)
Q Consensus 212 -------------------------------~TPgrl-~dll~~~~---~~~~~l~---~l~~lVlDEaD~ml 246 (494)
+||++| .|+|..+- .....++ .+.++||||+|+||
T Consensus 143 l~~~lGLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 143 VYRGLGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHTTTCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHhcCCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 799999 89998652 1124577 89999999999998
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.5e-14 Score=130.18 Aligned_cols=95 Identities=26% Similarity=0.368 Sum_probs=75.7
Q ss_pred EEEecCCCChHHHHHHH---hcCCccceeeccccccCCCCCCceEEEecCCC------CCHhHHHhhhccCCC---cceE
Q 042373 267 AVLFSPTFPPRVEILAR---KTNVCNLSIANSVRARGLDEKELELVINFDAP------NDYEDYVHHCCQSWL---KSCA 334 (494)
Q Consensus 267 ~ilfSAT~~~~v~~l~~---~~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P------~s~~~yvhR~GRaGr---~G~a 334 (494)
+..+++.++......+. +.|.++|||||+++++|+|+|++++|||||+| .+..+|+||+||+|| .|.+
T Consensus 61 ~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~ 140 (175)
T 2rb4_A 61 VSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLA 140 (175)
T ss_dssp EEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceE
Confidence 34444445544332221 27899999999999999999999999999999 999999999999655 6899
Q ss_pred EEEecccCHHHHHHHHHHHHhccCcch
Q 042373 335 FRFISEENAIYATDLVKAFELSELVVR 361 (494)
Q Consensus 335 itfv~~~~~~~~~~i~~~l~~~~~~vp 361 (494)
++|+++.+...+..+.+.++.....+|
T Consensus 141 ~~~~~~~~~~~~~~i~~~~~~~~~~~~ 167 (175)
T 2rb4_A 141 FNMIEVDELPSLMKIQDHFNSSIKQLN 167 (175)
T ss_dssp EEEECGGGHHHHHHHHHHHTCCCEEEC
T ss_pred EEEEccchHHHHHHHHHHhcCcccccC
Confidence 999999999999999998887665554
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.7e-14 Score=128.65 Aligned_cols=75 Identities=27% Similarity=0.399 Sum_probs=67.9
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCc
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELV 359 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~ 359 (494)
.|.++|||||+++++|+|+|++++|||||+|.+...|+||+||+|| .|.+++|+++.+..++..+.+.+....+.
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 160 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQK 160 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEE
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCc
Confidence 7889999999999999999999999999999999999999999655 67899999999999999999888655443
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=132.30 Aligned_cols=80 Identities=26% Similarity=0.454 Sum_probs=72.3
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCcch
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELVVR 361 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp 361 (494)
.|..+|||||+++++|+|+|++++||+||+|.+..+|+||+||+|| .|.+++|+++.+...+..+.++++...+++|
T Consensus 78 ~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (165)
T 1fuk_A 78 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELP 157 (165)
T ss_dssp TTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECC
T ss_pred cCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccC
Confidence 7889999999999999999999999999999999999999999665 6889999999999999999999988888777
Q ss_pred HHH
Q 042373 362 DDL 364 (494)
Q Consensus 362 ~~l 364 (494)
..+
T Consensus 158 ~~~ 160 (165)
T 1fuk_A 158 SDI 160 (165)
T ss_dssp SCC
T ss_pred ccH
Confidence 554
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-13 Score=132.17 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=68.0
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCc
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELV 359 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~ 359 (494)
.|..+|||||++++||+|+++|++|||||+|.+...|+||+||+|| .|.|++|+++.+...+..+.+.++.....
T Consensus 79 ~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~ 156 (212)
T 3eaq_A 79 QGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKR 156 (212)
T ss_dssp SSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEE
T ss_pred CCCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCee
Confidence 7899999999999999999999999999999999999999999665 68999999999999999999988765443
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=127.55 Aligned_cols=102 Identities=22% Similarity=0.403 Sum_probs=82.4
Q ss_pred CCcEEEecCCCChHHHHHHHh---cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCC---CcceEEEE
Q 042373 264 DRQAVLFSPTFPPRVEILARK---TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSW---LKSCAFRF 337 (494)
Q Consensus 264 ~~Q~ilfSAT~~~~v~~l~~~---~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaG---r~G~aitf 337 (494)
...+..+.+.++......+.. .|..+|||||+++++|+|++++++|||||+|.+...|+||+||+| +.|.+++|
T Consensus 55 ~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~ 134 (172)
T 1t5i_A 55 NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 134 (172)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEE
Confidence 455677777777655433322 799999999999999999999999999999999999999999955 46789999
Q ss_pred eccc-CHHHHHHHHHHHHhccCcchHHHH
Q 042373 338 ISEE-NAIYATDLVKAFELSELVVRDDLK 365 (494)
Q Consensus 338 v~~~-~~~~~~~i~~~l~~~~~~vp~~l~ 365 (494)
+++. +...+..+.+.+.....++|.++.
T Consensus 135 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (172)
T 1t5i_A 135 VSDENDAKILNDVQDRFEVNISELPDEID 163 (172)
T ss_dssp ECSHHHHHHHHHHHHHHCCCEEECC----
T ss_pred EcChhHHHHHHHHHHHHhcchhhCChhhc
Confidence 9976 568889999999888888887653
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-13 Score=134.47 Aligned_cols=107 Identities=17% Similarity=0.177 Sum_probs=85.1
Q ss_pred hHHHHHHHhhc-CCCcEEEecCCCChHHHHHHHh---cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhcc
Q 042373 252 PQITRIVQNIR-PDRQAVLFSPTFPPRVEILARK---TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQ 327 (494)
Q Consensus 252 ~~i~~Il~~l~-~~~Q~ilfSAT~~~~v~~l~~~---~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GR 327 (494)
..+..+...+. ....+..+.+.++..-...+.. .|..+|||||++++||||+++|++|||||+|.+...|+||+||
T Consensus 39 ~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GR 118 (300)
T 3i32_A 39 AETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGR 118 (300)
T ss_dssp HHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccC
Confidence 34444444442 3456777788887665443332 8999999999999999999999999999999999999999999
Q ss_pred CCC---cceEEEEecccCHHHHHHHHHHHHhccC
Q 042373 328 SWL---KSCAFRFISEENAIYATDLVKAFELSEL 358 (494)
Q Consensus 328 aGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~ 358 (494)
+|| .|.|++|+++.+...+..+.+.++....
T Consensus 119 agR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~ 152 (300)
T 3i32_A 119 TGRAGRGGRVVLLYGPRERRDVEALERAVGRRFK 152 (300)
T ss_dssp CC-----CEEEEEECSSTHHHHHHHHHHHTCCCE
T ss_pred cCcCCCCceEEEEeChHHHHHHHHHHHHhCCcce
Confidence 665 6899999999999999999999876543
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.6e-13 Score=121.42 Aligned_cols=73 Identities=23% Similarity=0.373 Sum_probs=65.3
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhcc
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSE 357 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~ 357 (494)
.|.++|||||+++++|+|++++++|||||+|.+...|+||+||+|| .|.+++|+++.+...+..+.+.++...
T Consensus 78 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (170)
T 2yjt_D 78 EGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 153 (170)
Confidence 6788999999999999999999999999999999999999999655 678999999998888888888766443
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.16 E-value=5.6e-11 Score=128.89 Aligned_cols=59 Identities=24% Similarity=0.095 Sum_probs=52.5
Q ss_pred CCCCCChhHHHHHHH----HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 140 NHENPVAIQAPASAL----IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 140 g~~~ptpiQ~~aip~----il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
|| .|.|.|.+.+.. +..|+|+++.||||+|||++|++|++.. ++++||++||++|+.|+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------------~~~v~i~~pt~~l~~q~ 63 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------------KPKVLFVVRTHNEFYPI 63 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------------CSEEEEEESSGGGHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------------CCeEEEEcCCHHHHHHH
Confidence 45 689999997764 5689999999999999999999999972 67999999999999998
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.2e-11 Score=127.31 Aligned_cols=60 Identities=17% Similarity=0.089 Sum_probs=49.6
Q ss_pred CCCCCCChhHHHHHH----HHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 139 LNHENPVAIQAPASA----LIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip----~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.|| .|+|+|.+++. .+..|+++++.||||+|||++|++|++.. ++++||++||++|+.|+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------------~~~~~~~~~t~~l~~q~ 67 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------------KKKVLIFTRTHSQLDSI 67 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------------TCEEEEEESCHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------------CCcEEEEcCCHHHHHHH
Confidence 578 89999999865 45689999999999999999999999764 57899999999999998
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-09 Score=117.81 Aligned_cols=114 Identities=25% Similarity=0.347 Sum_probs=84.5
Q ss_pred ChhHHHHHHHHHcCCCEEEEcCCCCCch--hhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh----------
Q 042373 145 VAIQAPASALIISGLDSVAITETGSGKT--LAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV---------- 212 (494)
Q Consensus 145 tpiQ~~aip~il~grdvi~~a~TGSGKT--lafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~---------- 212 (494)
+++|+.+++.++.+++++++|++||||| ++++++.+..+... .+.++++++||+++|.++.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-------~~~~vll~APTg~AA~~L~e~~~~~~~~l 223 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-------ERCRIRLAAPTGKAAARLTESLGKALRQL 223 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-------CCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-------CCCeEEEEeCChhHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999 77888888765211 1568999999999998862
Q ss_pred ---------------hhhHHHHH------HHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 213 ---------------RRGRMIDL------LCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 213 ---------------TPgrl~dl------l~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
|.-+++.. +.... .+...+++||||||+ |++ .+.+..++..++...|++++.
T Consensus 224 ~l~~~~~~~~~~~~~Tih~ll~~~~~~~~~~~~~---~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~liLvG 296 (608)
T 1w36_D 224 PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHA---GNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHARVIFLG 296 (608)
T ss_dssp SCCSCCCCSCSCCCBTTTSCC-----------CT---TSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEEEEEE
T ss_pred CCCHHHHhccchhhhhhHhhhccCCCchHHHhcc---CCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCEEEEEc
Confidence 11111100 00000 112268899999999 665 567889999999999999985
Q ss_pred C
Q 042373 272 P 272 (494)
Q Consensus 272 A 272 (494)
=
T Consensus 297 D 297 (608)
T 1w36_D 297 D 297 (608)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.2e-08 Score=110.14 Aligned_cols=62 Identities=23% Similarity=0.140 Sum_probs=53.4
Q ss_pred CCChhHHHHHH----HHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh
Q 042373 143 NPVAIQAPASA----LIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV 212 (494)
Q Consensus 143 ~ptpiQ~~aip----~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~ 212 (494)
+|.|.|.+.+. .+..|+++++.||||+|||++|++|++.++... +++++|++||++|+.|+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--------~~kvli~t~T~~l~~Qi~ 68 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--------KLKVLYLVRTNSQEEQVI 68 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--------TCEEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--------CCeEEEECCCHHHHHHHH
Confidence 58899988875 567899999999999999999999999998642 578999999999999983
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.63 E-value=5.2e-08 Score=96.31 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=49.3
Q ss_pred CcEEEecCCCChHHH-HHHHh--cC-Ccc-ceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc-----eE
Q 042373 265 RQAVLFSPTFPPRVE-ILARK--TN-VCN-LSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS-----CA 334 (494)
Q Consensus 265 ~Q~ilfSAT~~~~v~-~l~~~--~g-~~~-ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G-----~a 334 (494)
..+..+.+.++..-. .+... .+ .++ +|++|+++++|||++.+++||+||+|.++..|+||+||++|.| ..
T Consensus 138 ~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v 217 (271)
T 1z5z_A 138 TEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIV 217 (271)
T ss_dssp SCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEE
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEE
Confidence 345556666664332 22222 34 566 7999999999999999999999999999999999999976644 35
Q ss_pred EEEeccc
Q 042373 335 FRFISEE 341 (494)
Q Consensus 335 itfv~~~ 341 (494)
|.|++..
T Consensus 218 ~~li~~~ 224 (271)
T 1z5z_A 218 HKLISVG 224 (271)
T ss_dssp EEEEETT
T ss_pred EEEeeCC
Confidence 7788776
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.6e-05 Score=86.57 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=80.7
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh-----hhhHH
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV-----RRGRM 217 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~-----TPgrl 217 (494)
.+++.|..++..++.++.+++.|+.|||||.. +..++..+... +..+++++||...+..+. ....+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~--------g~~Vl~~ApT~~Aa~~L~e~~~~~a~Ti 259 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAESL--------GLEVGLCAPTGKAARRLGEVTGRTASTV 259 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHHT--------TCCEEEEESSHHHHHHHHHHHTSCEEEH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHhc--------CCeEEEecCcHHHHHHhHhhhcccHHHH
Confidence 58999999999999999999999999999964 23344444332 567999999998887762 11223
Q ss_pred HHHHHhcC----cceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 218 IDLLCKNG----VKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 218 ~dll~~~~----~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
..++.... ....+....++||+|||+.+- ...+..++..++...+++++.
T Consensus 260 h~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 260 HRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp HHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEEEE
T ss_pred HHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEEEe
Confidence 34443211 001123467899999999654 356777888888777777764
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.88 E-value=4.4e-05 Score=80.55 Aligned_cols=124 Identities=14% Similarity=0.122 Sum_probs=79.4
Q ss_pred HHhCCCCCCChhHHHHHHHHHcC-----CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 136 FSKLNHENPVAIQAPASALIISG-----LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 136 l~~~g~~~ptpiQ~~aip~il~g-----rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
..-+.|..+++-|.+++-.++.. ..+++.|+.|||||.. +..++..+.... ...+++++||...+..
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~-------~~~il~~a~T~~Aa~~ 89 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTG-------ETGIILAAPTHAAKKI 89 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTT-------CCCEEEEESSHHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC-------CceEEEecCcHHHHHH
Confidence 34577999999999999987643 3899999999999954 345555555431 2368999999888765
Q ss_pred hh-----hhhHHHHHHHhcC-----------cceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 211 QV-----RRGRMIDLLCKNG-----------VKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 211 i~-----TPgrl~dll~~~~-----------~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
+. ....+..++.... .....+.+.++||+||++.+- ..++..++..++...+++++.
T Consensus 90 l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~----~~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 90 LSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYD----RKLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCC----HHHHHHHHHHSCTTCEEEEEE
T ss_pred HHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCC----HHHHHHHHHhccCCCEEEEEC
Confidence 51 1122333443110 001235578999999999543 345666666666556666554
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00063 Score=61.76 Aligned_cols=117 Identities=18% Similarity=0.147 Sum_probs=58.6
Q ss_pred ChhHHHHHHHHH---------cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhh
Q 042373 145 VAIQAPASALII---------SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRG 215 (494)
Q Consensus 145 tpiQ~~aip~il---------~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPg 215 (494)
++-|..++..+. .|+.+++++|+|+|||.... .+...+.... |..++ .++..++...+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~-~i~~~~~~~~-------g~~~~-~~~~~~~~~~~~--- 83 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV-ATLKAIYEKK-------GIRGY-FFDTKDLIFRLK--- 83 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH-HHHHHHHHHS-------CCCCC-EEEHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH-HHHHHHHHHc-------CCeEE-EEEHHHHHHHHH---
Confidence 345555554443 47899999999999996433 2333332111 22233 344555544331
Q ss_pred HHHHHHHhcCcc--eecccceEEEEEcccchh-cccCChhHHHHHHHhhc-CCCcEEEecCCCCh
Q 042373 216 RMIDLLCKNGVK--ITNLTRVTYLVLDEADRM-FDMGFEPQITRIVQNIR-PDRQAVLFSPTFPP 276 (494)
Q Consensus 216 rl~dll~~~~~~--~~~l~~l~~lVlDEaD~m-l~~gf~~~i~~Il~~l~-~~~Q~ilfSAT~~~ 276 (494)
..+...... ...+.+..+||+||++.. ++......+..++.... .+..+|+.|...+.
T Consensus 84 ---~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 84 ---HLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp ---HHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred ---HHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 111111100 012446689999999853 22222345555555543 34455554444443
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0028 Score=56.39 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=44.1
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEE
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.|+.+++++++|+|||... -++....... |..++++ +..++... . -+.+.++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~--~~i~~~~~~~-------g~~~~~~-~~~~~~~~--------~----------~~~~~~l 86 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL--QAWVAQALEA-------GKNAAYI-DAASMPLT--------D----------AAFEAEY 86 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH--HHHHHHHHTT-------TCCEEEE-ETTTSCCC--------G----------GGGGCSE
T ss_pred CCCEEEEECCCCCCHHHHH--HHHHHHHHhc-------CCcEEEE-cHHHhhHH--------H----------HHhCCCE
Confidence 6889999999999999633 2333332211 3334444 33333221 0 1345689
Q ss_pred EEEcccchhcccCChhHHHHHHHhh
Q 042373 237 LVLDEADRMFDMGFEPQITRIVQNI 261 (494)
Q Consensus 237 lVlDEaD~ml~~gf~~~i~~Il~~l 261 (494)
|||||++.+.... ...+..++..+
T Consensus 87 LilDE~~~~~~~~-~~~l~~li~~~ 110 (149)
T 2kjq_A 87 LAVDQVEKLGNEE-QALLFSIFNRF 110 (149)
T ss_dssp EEEESTTCCCSHH-HHHHHHHHHHH
T ss_pred EEEeCccccChHH-HHHHHHHHHHH
Confidence 9999999865433 44555555544
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0067 Score=66.56 Aligned_cols=61 Identities=20% Similarity=0.144 Sum_probs=48.0
Q ss_pred CCCChhHHHHHHHHHcCCCE-EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 142 ENPVAIQAPASALIISGLDS-VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdv-i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..+.+-|.+|+-.+++.+++ |++||.|||||..-+- ++.++..+ +.++|+++||..-+.++
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~~--------~~~ILv~a~TN~AvD~i 249 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVKQ--------GLKVLCCAPSNIAVDNL 249 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHHT--------TCCEEEEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHhC--------CCeEEEEcCchHHHHHH
Confidence 36799999999999988764 7789999999976443 44444443 56899999998888776
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0037 Score=60.63 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=32.2
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHH-HHHHH--HHcCCCEEEEcCCCCCchhh
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQA-PASAL--IISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~-~aip~--il~grdvi~~a~TGSGKTla 174 (494)
|-.+|+++.-.+..++.|... +. .+++. ..+.. +..++.++++||+|+|||..
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~-~~--~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREV-VE--LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHH-TH--HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHH-HH--HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 446788888777777777653 11 01110 11111 12457899999999999963
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0091 Score=53.11 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
.+.+++++++|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46899999999999964
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.011 Score=54.32 Aligned_cols=103 Identities=17% Similarity=0.109 Sum_probs=49.6
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh---hhhHHHHHHHhcCcceecccceE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV---RRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~---TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
+.+++++++|+|||... -.+...+... +..++++ ...++..++. ..+.+..++. .+....
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 117 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANELAKR--------NVSSLIV-YVPELFRELKHSLQDQTMNEKLD-------YIKKVP 117 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHHHTT--------TCCEEEE-EHHHHHHHHHHC---CCCHHHHH-------HHHHSS
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHc--------CCeEEEE-EhHHHHHHHHHHhccchHHHHHH-------HhcCCC
Confidence 78999999999999743 2344444322 2223332 2334444331 0111111111 123446
Q ss_pred EEEEcccchhc--ccCChhHHHHHHHhh-cCCCcEEEecCCCChHH
Q 042373 236 YLVLDEADRMF--DMGFEPQITRIVQNI-RPDRQAVLFSPTFPPRV 278 (494)
Q Consensus 236 ~lVlDEaD~ml--~~gf~~~i~~Il~~l-~~~~Q~ilfSAT~~~~v 278 (494)
+|||||++.+. ++.....+..++... ....++|+.|..-+..+
T Consensus 118 ~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l 163 (202)
T 2w58_A 118 VLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQL 163 (202)
T ss_dssp EEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHH
T ss_pred EEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHH
Confidence 89999997643 222122333344433 34555666555444443
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.01 Score=54.61 Aligned_cols=97 Identities=14% Similarity=0.019 Sum_probs=49.9
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc---hhHHHhhhhhh----------HHHHHHHh
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT---GELVRQQVRRG----------RMIDLLCK 223 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT---reLa~Qi~TPg----------rl~dll~~ 223 (494)
.|+=.+++++.|+|||...+- ++...... +..++++.|. |....++.+.. .+.+++..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~-~~~~~~~~--------g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~ 72 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLS-FVEIYKLG--------KKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKY 72 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHH-HHHHHHHT--------TCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGG
T ss_pred ccEEEEEECCCCCCHHHHHHH-HHHHHHHC--------CCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHH
Confidence 456678899999999976543 33333222 4467887776 33222222110 00011110
Q ss_pred cCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 224 NGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 224 ~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
+ ....++|++||++.+. ..+.+.+..+.. .+..++++.-
T Consensus 73 -----~-~~~~dvviIDE~Q~~~-~~~~~~l~~l~~---~~~~Vi~~Gl 111 (184)
T 2orw_A 73 -----I-EEDTRGVFIDEVQFFN-PSLFEVVKDLLD---RGIDVFCAGL 111 (184)
T ss_dssp -----C-CTTEEEEEECCGGGSC-TTHHHHHHHHHH---TTCEEEEEEE
T ss_pred -----h-cCCCCEEEEECcccCC-HHHHHHHHHHHH---CCCCEEEEee
Confidence 0 1257899999999863 223344433333 3555555443
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.01 Score=52.76 Aligned_cols=83 Identities=24% Similarity=0.238 Sum_probs=40.1
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhh----hHHHHHHHhcCcceecccc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRR----GRMIDLLCKNGVKITNLTR 233 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TP----grl~dll~~~~~~~~~l~~ 233 (494)
++.++++|++|+|||... --+...+...... ....+...++ .....+....... ..+..++.. ......
T Consensus 43 ~~~~ll~G~~G~GKT~l~-~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 115 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV-EGLAQRIINGEVP-EGLKGRRVLA-LDMGALVAGAKYRGEFEERLKGVLND----LAKQEG 115 (195)
T ss_dssp SCEEEEECCTTSCHHHHH-HHHHHHHHHTCSC-GGGTTCEEEE-ECHHHHHTTTCSHHHHHHHHHHHHHH----HHHSTT
T ss_pred CCceEEECCCCCCHHHHH-HHHHHHHHhCCCc-hhhcCCcEEE-eeHHHHhccCCccccHHHHHHHHHHH----HhhcCC
Confidence 468999999999999643 2344444331110 0001233333 3333333211111 122222221 001223
Q ss_pred eEEEEEcccchhcc
Q 042373 234 VTYLVLDEADRMFD 247 (494)
Q Consensus 234 l~~lVlDEaD~ml~ 247 (494)
-.+|||||+|.|..
T Consensus 116 ~~vl~iDe~~~l~~ 129 (195)
T 1jbk_A 116 NVILFIDELHTMVG 129 (195)
T ss_dssp TEEEEEETGGGGTT
T ss_pred CeEEEEeCHHHHhc
Confidence 46899999999973
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.04 Score=56.82 Aligned_cols=63 Identities=13% Similarity=0.056 Sum_probs=50.4
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV 212 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~ 212 (494)
.++|+|...+-.+...|-+++..+-+.|||.+...-++..+...+ +..+++++||++-|..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~-------g~~v~~vA~t~~qA~~vf 225 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-------DKAVGILAHKGSMSAEVL 225 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSS-------SCEEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCC-------CCeEEEEeCCHHHHHHHH
Confidence 689999999887765677899999999999887766665554422 668999999999987764
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.012 Score=64.42 Aligned_cols=63 Identities=24% Similarity=0.170 Sum_probs=50.4
Q ss_pred CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 141 HENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+..+++-|..|+-.++.+.-++++||+|||||... .-++.++.... +.++|+++||...+.++
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~~~-------~~~ilv~a~tn~A~~~l 240 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQG-------NGPVLVCAPSNIAVDQL 240 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHTSS-------SCCEEEEESSHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHHcC-------CCeEEEEeCcHHHHHHH
Confidence 45789999999999998888899999999999764 34555554321 56899999999888776
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.014 Score=57.18 Aligned_cols=76 Identities=24% Similarity=0.224 Sum_probs=40.4
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
+.+++++||+|+|||...- .+...+...... ..++ ++.+....|.... .+...+..++... .-.
T Consensus 67 ~~~vll~G~~GtGKT~la~-~la~~l~~~~~~---~~~~--~~~~~~~~l~~~~~g~~~~~~~~~~~~~--------~~~ 132 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL-KMAGLLHRLGYV---RKGH--LVSVTRDDLVGQYIGHTAPKTKEVLKRA--------MGG 132 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH-HHHHHHHHTTSS---SSCC--EEEECGGGTCCSSTTCHHHHHHHHHHHH--------TTS
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHHhcCCc---CCCc--EEEEcHHHhhhhcccccHHHHHHHHHhc--------CCC
Confidence 3579999999999996443 233333322110 0122 3333334443322 2333444444432 124
Q ss_pred EEEEcccchhcc
Q 042373 236 YLVLDEADRMFD 247 (494)
Q Consensus 236 ~lVlDEaD~ml~ 247 (494)
+|+|||+|.|+.
T Consensus 133 vl~iDEid~l~~ 144 (309)
T 3syl_A 133 VLFIDEAYYLYR 144 (309)
T ss_dssp EEEEETGGGSCC
T ss_pred EEEEEChhhhcc
Confidence 899999999873
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.013 Score=58.22 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=38.4
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcc--eecccceE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVK--ITNLTRVT 235 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~--~~~l~~l~ 235 (494)
++.++++||+|+|||...- .+...+... +...+++. ..++..+. ...+...... ...+.+..
T Consensus 37 ~~~lll~G~~GtGKT~la~-~i~~~~~~~--------~~~~~~i~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 100 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ-AAGNEAKKR--------GYRVIYSS-ADDFAQAM------VEHLKKGTINEFRNMYKSVD 100 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH-HHHHHHHHT--------TCCEEEEE-HHHHHHHH------HHHHHHTCHHHHHHHHHTCS
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHC--------CCEEEEEE-HHHHHHHH------HHHHHcCcHHHHHHHhcCCC
Confidence 4689999999999996432 233333322 22344443 33333222 1111110000 00123467
Q ss_pred EEEEcccchhcc
Q 042373 236 YLVLDEADRMFD 247 (494)
Q Consensus 236 ~lVlDEaD~ml~ 247 (494)
+|+|||+|.+..
T Consensus 101 vL~iDEi~~l~~ 112 (324)
T 1l8q_A 101 LLLLDDVQFLSG 112 (324)
T ss_dssp EEEEECGGGGTT
T ss_pred EEEEcCcccccC
Confidence 999999999874
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.012 Score=58.24 Aligned_cols=110 Identities=17% Similarity=0.223 Sum_probs=55.3
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHH-HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCe
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASAL-IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPV 197 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~-il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~ 197 (494)
|-.+|++++-...+++.|... ...|.......... +..++.++++||+|+|||+..- .+.... + .
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~-v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~--ala~~~----------~-~ 75 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQEL-VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK--AIANEC----------Q-A 75 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHH-HHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH--HHHHHT----------T-C
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH--HHHHHh----------C-C
Confidence 456799987777777776642 00000000000000 1235789999999999997432 222221 1 2
Q ss_pred EEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 198 GLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 198 aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
.+|.+...+|.... .+...+..++... .-..-.++++||+|.|..
T Consensus 76 ~~i~v~~~~l~~~~~g~~~~~~~~~f~~a-----~~~~p~il~iDEid~l~~ 122 (301)
T 3cf0_A 76 NFISIKGPELLTMWFGESEANVREIFDKA-----RQAAPCVLFFDELDSIAK 122 (301)
T ss_dssp EEEEECHHHHHHHHHTTCTTHHHHHHHHH-----HHTCSEEEEECSTTHHHH
T ss_pred CEEEEEhHHHHhhhcCchHHHHHHHHHHH-----HhcCCeEEEEEChHHHhh
Confidence 23334444444322 1222233333321 011246899999999864
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.022 Score=54.22 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=44.4
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchh--HHHhh-------------hhhhHHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE--LVRQQ-------------VRRGRMIDLL 221 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTre--La~Qi-------------~TPgrl~dll 221 (494)
.|.=+++.+++|+|||.+.+--+.+.. .. +-+++|+.|... ...++ .....+++.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~-~~--------g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i 81 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE-YA--------DVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYI 81 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH-HT--------TCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH-hc--------CCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHH
Confidence 355567789999999976554444333 22 456787765431 22233 1223444444
Q ss_pred HhcCcceecccceEEEEEcccchhc
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml 246 (494)
... ..-.+.++||+||++.+.
T Consensus 82 ~~~----~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 82 MSN----SFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp HST----TSCTTCCEEEECSGGGSC
T ss_pred HHH----hhCCCCCEEEEecCccCc
Confidence 431 112357899999998643
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0091 Score=59.52 Aligned_cols=105 Identities=10% Similarity=0.165 Sum_probs=55.1
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHH-----cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCC
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALII-----SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGD 193 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il-----~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~ 193 (494)
|-.+|+++.-...+++.|...= . .|. ..|.++ ..+.+++++|+|+|||...- .+...+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i-~--~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~-aia~~~---------- 75 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAV-I--LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK-AVATEA---------- 75 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHT-H--HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHH-HHHHHH----------
T ss_pred CCCCHHHhcChHHHHHHHHHHH-H--HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHH-HHHHHH----------
Confidence 4467999887788887776531 0 000 011111 23679999999999997432 222222
Q ss_pred CCCeEEEEccchhHHHhh-h-hhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 194 DSPVGLVMAPTGELVRQQ-V-RRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 194 ~~p~aLIl~PTreLa~Qi-~-TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+.. ++.+..-+|.... . +...+..++... .-..-.+|+|||+|.|..
T Consensus 76 -~~~-~~~v~~~~l~~~~~g~~~~~~~~~f~~a-----~~~~~~vl~iDEid~l~~ 124 (322)
T 3eie_A 76 -NST-FFSVSSSDLVSKWMGESEKLVKQLFAMA-----RENKPSIIFIDQVDALTG 124 (322)
T ss_dssp -TCE-EEEEEHHHHHTTTGGGHHHHHHHHHHHH-----HHTSSEEEEEECGGGGSC
T ss_pred -CCC-EEEEchHHHhhcccchHHHHHHHHHHHH-----HhcCCeEEEechhhhhhc
Confidence 222 3333334443322 1 222232333211 112346899999999875
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.044 Score=52.83 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=38.3
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
+.+++++|+|+|||..... +...+ . .+...+.+|. .+.... .....+..++... ....-.+
T Consensus 65 ~~vLl~G~~GtGKT~la~~-ia~~~-~---------~~~~~i~~~~-~~~g~~~~~~~~~~~~~~~~~-----~~~~~~v 127 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAK-IAEES-N---------FPFIKICSPD-KMIGFSETAKCQAMKKIFDDA-----YKSQLSC 127 (272)
T ss_dssp EEEEEECSTTSSHHHHHHH-HHHHH-T---------CSEEEEECGG-GCTTCCHHHHHHHHHHHHHHH-----HTSSEEE
T ss_pred eEEEEECCCCCcHHHHHHH-HHHHh-C---------CCEEEEeCHH-HhcCCchHHHHHHHHHHHHHH-----HhcCCcE
Confidence 5799999999999974322 22221 1 3444444553 221100 0112222333221 1234679
Q ss_pred EEEcccchhcc
Q 042373 237 LVLDEADRMFD 247 (494)
Q Consensus 237 lVlDEaD~ml~ 247 (494)
|+|||+|.|+.
T Consensus 128 l~iDEid~l~~ 138 (272)
T 1d2n_A 128 VVVDDIERLLD 138 (272)
T ss_dssp EEECCHHHHTT
T ss_pred EEEEChhhhhc
Confidence 99999999964
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.025 Score=59.13 Aligned_cols=101 Identities=13% Similarity=0.220 Sum_probs=50.8
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcc--eeccc-ce
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVK--ITNLT-RV 234 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~--~~~l~-~l 234 (494)
++.++++||+|+|||...- .+...+....+ +..++++. ...+..++ ...+...... ...+. ..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~-aia~~l~~~~~------~~~v~~v~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 195 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ-SIGNYVVQNEP------DLRVMYIT-SEKFLNDL------VDSMKEGKLNEFREKYRKKV 195 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH-HHHHHHHHHCC------SSCEEEEE-HHHHHHHH------HHHHHTTCHHHHHHHHTTTC
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHhCC------CCeEEEee-HHHHHHHH------HHHHHcccHHHHHHHhcCCC
Confidence 4689999999999996432 23333322210 22344443 33333322 2222211100 00123 56
Q ss_pred EEEEEcccchhccc-CChhHHHHHHHhh-cCCCcEEEecC
Q 042373 235 TYLVLDEADRMFDM-GFEPQITRIVQNI-RPDRQAVLFSP 272 (494)
Q Consensus 235 ~~lVlDEaD~ml~~-gf~~~i~~Il~~l-~~~~Q~ilfSA 272 (494)
.+|+|||+|.+... .....+..++..+ ..+.++|+.|.
T Consensus 196 ~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 196 DILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp SEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 79999999998853 2233444444443 33455555443
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.09 Score=57.00 Aligned_cols=63 Identities=13% Similarity=0.056 Sum_probs=50.5
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV 212 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~ 212 (494)
.|+|+|...+-.+-..+-+++..+-|+|||.+...-++..+...+ +..+++++||++.|..+.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-------~~~i~~va~t~~qA~~~~ 225 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-------DKAVGILAHKGSMSAEVL 225 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-------SCEEEEEESSHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-------CCeEEEEECCHHHHHHHH
Confidence 589999999887755688999999999999887765555554432 568999999999998863
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.024 Score=63.85 Aligned_cols=62 Identities=24% Similarity=0.183 Sum_probs=49.3
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..+++.|..|+-.++.+.-+++.||+|||||... .-++.++.... +.++|+++||...+.++
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~~-------~~~ilv~a~tn~A~~~l 416 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQG-------NGPVLVCAPSNIAVDQL 416 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTTC-------SSCEEEEESSHHHHHHH
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHcC-------CCcEEEEcCcHHHHHHH
Confidence 4578999999999998888899999999999764 34555555421 56899999999887775
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.09 Score=52.74 Aligned_cols=26 Identities=8% Similarity=-0.115 Sum_probs=19.1
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
+.++++.||+|+|||++.- -++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v~-~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN-DVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 4689999999999997543 3445554
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.022 Score=56.73 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=49.4
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHH-cCCCCCCCCCCCeEEEEccchhHHHhhh---hhhHHHHHHHhcCcceecccc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIW-EQPPVVPGDDSPVGLVMAPTGELVRQQV---RRGRMIDLLCKNGVKITNLTR 233 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~-~~~~~~~~~~~p~aLIl~PTreLa~Qi~---TPgrl~dll~~~~~~~~~l~~ 233 (494)
+++++++||+|+|||.... .+...+. .. +..++++. .-+|..++. ..+.+.. ....+.+
T Consensus 152 ~~~lll~G~~GtGKT~La~-aia~~~~~~~--------g~~v~~~~-~~~l~~~l~~~~~~~~~~~-------~~~~~~~ 214 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA-AMAHELSEKK--------GVSTTLLH-FPSFAIDVKNAISNGSVKE-------EIDAVKN 214 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHHHHHS--------CCCEEEEE-HHHHHHHHHCCCC----CC-------TTHHHHT
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHHHhc--------CCcEEEEE-HHHHHHHHHHHhccchHHH-------HHHHhcC
Confidence 6899999999999996433 3333343 22 33344332 224444331 1111100 0112456
Q ss_pred eEEEEEcccchhc--ccCChhHHHHHHHhh-cCCCcEEEecCCCChH
Q 042373 234 VTYLVLDEADRMF--DMGFEPQITRIVQNI-RPDRQAVLFSPTFPPR 277 (494)
Q Consensus 234 l~~lVlDEaD~ml--~~gf~~~i~~Il~~l-~~~~Q~ilfSAT~~~~ 277 (494)
..+|||||++... .+.....+..++... .....+|+.|..-+..
T Consensus 215 ~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~ 261 (308)
T 2qgz_A 215 VPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFAD 261 (308)
T ss_dssp SSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHH
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHH
Confidence 6799999996533 222122334355433 2344566655544333
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.057 Score=53.94 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.++.++++||+|+|||..
T Consensus 43 ~~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCCEEECBCTTSSHHHH
T ss_pred CCCcEEEECCCCCCHHHH
Confidence 357899999999999964
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.047 Score=57.26 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=27.0
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.++.|+.|||||... ..+... ...+|++||++++..+
T Consensus 164 ~~I~G~aGsGKTt~I-----~~~~~~---------~~~lVlTpT~~aa~~l 200 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEI-----LSRVNF---------EEDLILVPGRQAAEMI 200 (446)
T ss_dssp EEEEECTTSCHHHHH-----HHHCCT---------TTCEEEESCHHHHHHH
T ss_pred EEEEcCCCCCHHHHH-----HHHhcc---------CCeEEEeCCHHHHHHH
Confidence 467899999999743 222221 2459999999999876
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.021 Score=53.42 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=13.3
Q ss_pred EEEEcCCCCCchhhhH
Q 042373 161 SVAITETGSGKTLAFL 176 (494)
Q Consensus 161 vi~~a~TGSGKTlafl 176 (494)
.+++|+.|||||+...
T Consensus 8 ~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEEeCCCCCHHHHHH
Confidence 5789999999998543
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.034 Score=51.55 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=38.4
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEE
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.++.++++||+|+|||.... -+...+... +..++++ ...++..... +.+ ..+.+..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~-~l~~~~~~~--------~~~~~~~-~~~~~~~~~~------~~~-------~~~~~~~v 107 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH-AACARANEL--------ERRSFYI-PLGIHASIST------ALL-------EGLEQFDL 107 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH-HHHHHHHHT--------TCCEEEE-EGGGGGGSCG------GGG-------TTGGGSSE
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHHHc--------CCeEEEE-EHHHHHHHHH------HHH-------HhccCCCE
Confidence 46889999999999996432 333333322 2233333 3333332210 111 12345678
Q ss_pred EEEcccchhcc
Q 042373 237 LVLDEADRMFD 247 (494)
Q Consensus 237 lVlDEaD~ml~ 247 (494)
|||||+|.+..
T Consensus 108 liiDe~~~~~~ 118 (242)
T 3bos_A 108 ICIDDVDAVAG 118 (242)
T ss_dssp EEEETGGGGTT
T ss_pred EEEeccccccC
Confidence 99999998864
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.027 Score=63.55 Aligned_cols=63 Identities=21% Similarity=0.179 Sum_probs=48.7
Q ss_pred CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 141 HENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 141 ~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+..+++-|..|+-.++.+.-+++.||.|||||.... -++.++.... +.++|+++||...+.++
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~-~~i~~l~~~~-------~~~ILv~a~tn~A~d~l 420 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLSKIH-------KDRILVCAPSNVAVDHL 420 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHH-HHHHHHHHHH-------CCCEEEEESSHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH-HHHHHHHhCC-------CCeEEEEcCcHHHHHHH
Confidence 345789999999999987778999999999997543 3444443311 56899999999888776
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.021 Score=59.85 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=58.9
Q ss_pred CCCCCcccCCCCHHHHHHHHhC---CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKL---NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~---g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
.|-.+|++++-.+...+.|.+. -+..|.-++...++ -.+.+|++||+|+|||+..- .+...+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllAk-AiA~e~----------- 239 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLAR-ACAAQT----------- 239 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHHH-HHHHHH-----------
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHHH-HHHHHh-----------
Confidence 5678999999888877777642 11122222221111 23789999999999997422 222222
Q ss_pred CCeEEEEccchhHHHhh-h-hhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 195 SPVGLVMAPTGELVRQQ-V-RRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi-~-TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+.. ++.+..-+|.... + +...+..++... .-..-++|++||+|.++.
T Consensus 240 ~~~-f~~v~~s~l~~~~vGese~~ir~lF~~A-----~~~aP~IifiDEiDal~~ 288 (434)
T 4b4t_M 240 NAT-FLKLAAPQLVQMYIGEGAKLVRDAFALA-----KEKAPTIIFIDELDAIGT 288 (434)
T ss_dssp TCE-EEEEEGGGGCSSCSSHHHHHHHHHHHHH-----HHHCSEEEEEECTHHHHC
T ss_pred CCC-EEEEehhhhhhcccchHHHHHHHHHHHH-----HhcCCeEEeecchhhhhh
Confidence 222 3333333443322 2 222333333321 112346899999999874
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.048 Score=54.46 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=30.8
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHH-----cCCCEEEEcCCCCCchhh
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALII-----SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il-----~grdvi~~a~TGSGKTla 174 (494)
|-.+|++++=...+++.|++.= . .|++ .|.++ ..+.++++||+|+|||..
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v-~--~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAV-I--LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH-H--HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHH-H--HHHh---CHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 4468999887777777765420 0 0000 01111 236899999999999963
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.17 Score=47.10 Aligned_cols=115 Identities=14% Similarity=0.101 Sum_probs=71.4
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc--cc------hhHHHhhh-------------hhh--
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA--PT------GELVRQQV-------------RRG-- 215 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~--PT------reLa~Qi~-------------TPg-- 215 (494)
-.+++..++|.|||.+.+--.++.+-. |-+++|+- +. ..+..+.. ++.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~---------G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~ 99 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH---------GKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNRE 99 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT---------TCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcH
Confidence 479999999999999888777777754 55677772 21 12333321 111
Q ss_pred ----HHHHHHHhcCcceecccceEEEEEcccchhcccCCh--hHHHHHHHhhcCCCcEEEecCCCChHHHHHHH
Q 042373 216 ----RMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFE--PQITRIVQNIRPDRQAVLFSPTFPPRVEILAR 283 (494)
Q Consensus 216 ----rl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~--~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~ 283 (494)
.....+..- .+.+.-.++++|||||+-..+..++. +.+..++...+...-+|+.+--.|+++..++.
T Consensus 100 ~~~~~a~~~l~~a-~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD 172 (196)
T 1g5t_A 100 ADTAACMAVWQHG-KRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLAD 172 (196)
T ss_dssp HHHHHHHHHHHHH-HHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCS
T ss_pred HHHHHHHHHHHHH-HHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCc
Confidence 011111110 01111256899999999887777753 45666666666666777777778888877764
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.035 Score=58.94 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=38.9
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
.+.+++++|+|+|||+..- .+..-. + .-++.+..-++.... .+.+.+..++... .-..-.
T Consensus 238 ~~~vLL~GppGtGKT~lAr--aia~~~----------~-~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A-----~~~~p~ 299 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIAR--AVANET----------G-AFFFLINGPEIMSKLAGESESNLRKAFEEA-----EKNAPA 299 (489)
T ss_dssp CCEEEEECSTTSSHHHHHH--HHHHHC----------S-SEEEEEEHHHHHTSCTTHHHHHHHHHHHHH-----HHTCSE
T ss_pred CCcEEEECcCCCCHHHHHH--HHHHHh----------C-CCEEEEEchHhhhhhcchhHHHHHHHHHHH-----HhcCCc
Confidence 4689999999999997432 222211 1 123333334443332 1223333333321 112236
Q ss_pred EEEEcccchhcc
Q 042373 236 YLVLDEADRMFD 247 (494)
Q Consensus 236 ~lVlDEaD~ml~ 247 (494)
+|+|||+|.|..
T Consensus 300 iLfLDEId~l~~ 311 (489)
T 3hu3_A 300 IIFIDELDAIAP 311 (489)
T ss_dssp EEEEESHHHHCB
T ss_pred EEEecchhhhcc
Confidence 899999999885
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.048 Score=49.49 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=13.9
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
..++++|++|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 39 PHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999963
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.11 Score=51.32 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=56.9
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCC--CE-EEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCe
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGL--DS-VAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPV 197 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~gr--dv-i~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~ 197 (494)
.+|+++--++.+++.|.. .+..|+ ++ ++.+|+|+|||..... +...+ +..
T Consensus 23 ~~~~~ivg~~~~~~~l~~---------------~l~~~~~~~~~L~~G~~G~GKT~la~~-la~~l-----------~~~ 75 (324)
T 3u61_B 23 STIDECILPAFDKETFKS---------------ITSKGKIPHIILHSPSPGTGKTTVAKA-LCHDV-----------NAD 75 (324)
T ss_dssp CSTTTSCCCHHHHHHHHH---------------HHHTTCCCSEEEECSSTTSSHHHHHHH-HHHHT-----------TEE
T ss_pred CCHHHHhCcHHHHHHHHH---------------HHHcCCCCeEEEeeCcCCCCHHHHHHH-HHHHh-----------CCC
Confidence 456666666666655543 112333 44 5567799999974322 22222 334
Q ss_pred EEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEE
Q 042373 198 GLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269 (494)
Q Consensus 198 aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~il 269 (494)
.+.+..+..-...+ ...+..+.... .......+||+||+|.|........+..+++..+...++|+
T Consensus 76 ~~~i~~~~~~~~~i--~~~~~~~~~~~----~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~ 141 (324)
T 3u61_B 76 MMFVNGSDCKIDFV--RGPLTNFASAA----SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIII 141 (324)
T ss_dssp EEEEETTTCCHHHH--HTHHHHHHHBC----CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEE
T ss_pred EEEEcccccCHHHH--HHHHHHHHhhc----ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEE
Confidence 55554432111111 01111222211 12346789999999998622223344444554444444444
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.081 Score=46.02 Aligned_cols=19 Identities=16% Similarity=-0.069 Sum_probs=16.6
Q ss_pred HHcCCCEEEEcCCCCCchh
Q 042373 155 IISGLDSVAITETGSGKTL 173 (494)
Q Consensus 155 il~grdvi~~a~TGSGKTl 173 (494)
...+.++++++++|+|||.
T Consensus 24 ~~~~~~vll~G~~GtGKt~ 42 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFET 42 (143)
T ss_dssp HTCSSCEEEEEETTCCHHH
T ss_pred hCCCCcEEEECCCCccHHH
Confidence 4567899999999999996
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.068 Score=46.59 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=16.9
Q ss_pred HcCCCEEEEcCCCCCchhhh
Q 042373 156 ISGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 156 l~grdvi~~a~TGSGKTlaf 175 (494)
..+.++++.+++|+|||...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46689999999999999743
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.088 Score=49.84 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=28.2
Q ss_pred CCcccCCCCHHHHHHHHhCC--CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhh
Q 042373 121 KTWRQTGLTTKILETFSKLN--HENPVAIQAPASALIISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g--~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTla 174 (494)
.+|+++.-...+++.|+++- +..|..+... -+-..+.+++++|+|+|||..
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHH
Confidence 46777765666666664420 1112111111 012346899999999999964
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.086 Score=52.49 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
++.++++|++|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 57899999999999964
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.065 Score=54.72 Aligned_cols=46 Identities=9% Similarity=0.105 Sum_probs=29.9
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHH---------HcCCCEEEEcCCCCCchhh
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALI---------ISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~i---------l~grdvi~~a~TGSGKTla 174 (494)
+-.+|+++.-...+++.|...- .+|.. ...+.+++++|+|+|||..
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIV----------ILPSLRPELFTGLRAPARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHT----------HHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHH----------HHhccCHHHhcccCCCCceEEEECCCCCCHHHH
Confidence 3457888766666666665421 11111 1357899999999999964
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.052 Score=58.92 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=46.3
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..+++-|.+++- .....+++.|+.|||||...+--+...+.... ...-.+|++++|+..+.++
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-----~~~~~iL~ltft~~aa~e~ 70 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-----CSPYSIMAVTFTNKAAAEM 70 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-----CCGGGEEEEESSHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-----CChhhEEEEeccHHHHHHH
Confidence 468999999997 33678999999999999865554444443211 1123799999999988876
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.16 Score=50.78 Aligned_cols=97 Identities=15% Similarity=0.126 Sum_probs=52.0
Q ss_pred CChhHHHHHHHHH----cCC---CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCC-------------CCCCeEEEEcc
Q 042373 144 PVAIQAPASALII----SGL---DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPG-------------DDSPVGLVMAP 203 (494)
Q Consensus 144 ptpiQ~~aip~il----~gr---dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~-------------~~~p~aLIl~P 203 (494)
..|+|..++..+. +|+ -+++.||.|+|||.... -+...+......... ...|..+++.|
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 81 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAP 81 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEec
Confidence 4688888776554 444 48999999999996443 344555432211000 01245566665
Q ss_pred c---hhHHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 204 T---GELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 204 T---reLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
. ... ....+.+++..-.. .-....-+++|+||||.|..
T Consensus 82 ~~~~~~~-----~i~~ir~l~~~~~~-~~~~~~~kvviIdead~l~~ 122 (334)
T 1a5t_A 82 EKGKNTL-----GVDAVREVTEKLNE-HARLGGAKVVWVTDAALLTD 122 (334)
T ss_dssp CTTCSSB-----CHHHHHHHHHHTTS-CCTTSSCEEEEESCGGGBCH
T ss_pred cccCCCC-----CHHHHHHHHHHHhh-ccccCCcEEEEECchhhcCH
Confidence 3 111 11112233322110 11235678999999999864
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.19 Score=45.85 Aligned_cols=15 Identities=27% Similarity=0.204 Sum_probs=13.3
Q ss_pred CEEEEcCCCCCchhh
Q 042373 160 DSVAITETGSGKTLA 174 (494)
Q Consensus 160 dvi~~a~TGSGKTla 174 (494)
.++++|++|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999964
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.076 Score=53.69 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=30.0
Q ss_pred CCCcccCCCCHHHHHHHHhCCC---CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhh
Q 042373 120 IKTWRQTGLTTKILETFSKLNH---ENPVAIQAPASALIISGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~---~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlaf 175 (494)
-.+|+++.-...+++.|.+.=. ..|..... .....+.+++++|+|+|||...
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~----~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTG----LRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCG----GGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhh----ccCCCceEEEECCCCCCHHHHH
Confidence 4578887666666666654200 00000000 0123578999999999999743
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=93.94 E-value=0.03 Score=58.57 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=31.9
Q ss_pred CCCCCcccCCCCHHHHHHHHhCC-C--CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhh
Q 042373 118 KPIKTWRQTGLTTKILETFSKLN-H--ENPVAIQAPASALIISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~g-~--~~ptpiQ~~aip~il~grdvi~~a~TGSGKTla 174 (494)
.|-.+|++++-...+.+.|...- + ..|.-++. .....+.++++||+|+|||+.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~----~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG----KRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG----GGCCCSEEEEECSTTSSHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc----cCCCCceEEEECCCCCCHHHH
Confidence 34578999877777777775420 0 00110000 012247899999999999964
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.80 E-value=0.37 Score=47.76 Aligned_cols=40 Identities=10% Similarity=0.300 Sum_probs=25.9
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
.+-+++|+||+|. ++......+..++...+....+|+.|.
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~ 172 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCD 172 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEES
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 4667999999999 444445566666666555555555544
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.077 Score=54.96 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=56.2
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHH------cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCC
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALII------SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPG 192 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il------~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~ 192 (494)
|-.+|+++|=-....+.|++. .. .|+.. |.++ -.+.+|++||+|+|||+..- .+...+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~-v~--~Pl~~---pe~f~~~gi~~prGvLL~GPPGTGKTllAk-AiA~e~--------- 206 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEV-IE--LPVKH---PELFESLGIAQPKGVILYGPPGTGKTLLAR-AVAHHT--------- 206 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHH-TH--HHHHC---HHHHHHHTCCCCCCEEEESCSSSSHHHHHH-HHHHHH---------
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HH--HHHhC---HHHHHhCCCCCCCceEEeCCCCCCHHHHHH-HHHHhh---------
Confidence 557899997666666666543 11 11111 2222 23789999999999997432 222222
Q ss_pred CCCCeEEEEccchhHHHhh-h-hhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 193 DDSPVGLVMAPTGELVRQQ-V-RRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 193 ~~~p~aLIl~PTreLa~Qi-~-TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+...+.+.. -+|.... + +...+..++... .-..-++|.+||+|.++.
T Consensus 207 --~~~f~~v~~-s~l~sk~vGese~~vr~lF~~A-----r~~aP~IIFiDEiDai~~ 255 (405)
T 4b4t_J 207 --DCKFIRVSG-AELVQKYIGEGSRMVRELFVMA-----REHAPSIIFMDEIDSIGS 255 (405)
T ss_dssp --TCEEEEEEG-GGGSCSSTTHHHHHHHHHHHHH-----HHTCSEEEEEESSSCCTT
T ss_pred --CCCceEEEh-HHhhccccchHHHHHHHHHHHH-----HHhCCceEeeecchhhcc
Confidence 223333333 3333322 2 333444444321 112346889999999874
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.1 Score=57.37 Aligned_cols=102 Identities=19% Similarity=0.223 Sum_probs=64.8
Q ss_pred CCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---------
Q 042373 143 NPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--------- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--------- 211 (494)
.+|.-|++++..++.- .-.++.|.-|.|||.+..+.+- .+. + .++|.+||.+-+..+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~~----------~-~~~vtAP~~~a~~~l~~~~~~~i~ 242 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RIA----------G-RAIVTAPAKASTDVLAQFAGEKFR 242 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HSS----------S-CEEEECSSCCSCHHHHHHHGGGCC
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HHH----------h-CcEEECCCHHHHHHHHHHhhCCeE
Confidence 6899999999988862 3468889999999965554333 221 1 358999998765432
Q ss_pred -hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCC
Q 042373 212 -VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274 (494)
Q Consensus 212 -~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~ 274 (494)
..|..+ +. .+...++||||||=.+- .+.+..++... ..++||.|.
T Consensus 243 ~~~Pd~~---~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~~----~~v~~~tTv 288 (671)
T 2zpa_A 243 FIAPDAL---LA-------SDEQADWLVVDEAAAIP----APLLHQLVSRF----PRTLLTTTV 288 (671)
T ss_dssp BCCHHHH---HH-------SCCCCSEEEEETGGGSC----HHHHHHHHTTS----SEEEEEEEB
T ss_pred EeCchhh---hh-------CcccCCEEEEEchhcCC----HHHHHHHHhhC----CeEEEEecC
Confidence 223221 11 24458999999997543 45555555532 235555554
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.099 Score=50.79 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=30.8
Q ss_pred CCCCcccCCCCHHHHHHHHhCC-C--CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhh
Q 042373 119 PIKTWRQTGLTTKILETFSKLN-H--ENPVAIQAPASALIISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g-~--~~ptpiQ~~aip~il~grdvi~~a~TGSGKTla 174 (494)
|-.+|+++.=...+++.|...= . ..|.-.. .....++.++++||+|+|||..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~----~~~~~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFT----GLRAPAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSC----GGGCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHh----cCCCCCCeEEEECcCCCCHHHH
Confidence 4467888876777777765421 0 0000000 0001357899999999999974
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.16 Score=50.27 Aligned_cols=64 Identities=20% Similarity=0.222 Sum_probs=38.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
..++++|++|+|||...-. +.+... .+...+-++.. ...+.+...+.. +..-.+|+
T Consensus 56 ~~vll~G~~GtGKT~la~~--ia~~~~---------~~~~~~~~~~~------~~~~~~~~~~~~-------~~~~~vl~ 111 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANI--ISYEMS---------ANIKTTAAPMI------EKSGDLAAILTN-------LSEGDILF 111 (338)
T ss_dssp CCEEEECSTTSSHHHHHHH--HHHHTT---------CCEEEEEGGGC------CSHHHHHHHHHT-------CCTTCEEE
T ss_pred CeEEEECcCCCCHHHHHHH--HHHHhC---------CCeEEecchhc------cchhHHHHHHHh-------ccCCCEEE
Confidence 5899999999999974322 222111 33333333332 233445555543 33457899
Q ss_pred Ecccchhc
Q 042373 239 LDEADRMF 246 (494)
Q Consensus 239 lDEaD~ml 246 (494)
|||+|.|.
T Consensus 112 lDEi~~l~ 119 (338)
T 3pfi_A 112 IDEIHRLS 119 (338)
T ss_dssp EETGGGCC
T ss_pred EechhhcC
Confidence 99999886
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.095 Score=49.80 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=30.4
Q ss_pred CCCCCcccCCCCHHHHHHHHhCC--CCCCChhHHHHHHHHH--cCCCEEEEcCCCCCchh
Q 042373 118 KPIKTWRQTGLTTKILETFSKLN--HENPVAIQAPASALII--SGLDSVAITETGSGKTL 173 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~g--~~~ptpiQ~~aip~il--~grdvi~~a~TGSGKTl 173 (494)
.|-.+|+++.-.+.+...++.+- |..+ ..+..+- -.+.+++++|+|+|||.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~g~ll~G~~G~GKTt 64 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTH 64 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCSEEEEECCTTSSHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCCCCHHH
Confidence 35568888877777666665431 1111 1111110 12459999999999996
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.6 Score=45.00 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.++.++++||+|+|||..
T Consensus 49 ~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 367899999999999964
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.13 Score=51.86 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=28.9
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHH-----cCCCEEEEcCCCCCchhhh
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALII-----SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il-----~grdvi~~a~TGSGKTlaf 175 (494)
|-.+|++++-...+++.|... +.. | .-.|.++ ..+.+++++|+|+|||+..
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~-v~~--~---~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEA-VIL--P---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHH-THH--H---HHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HHH--H---HhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 345788876555666666442 000 0 0001111 2367999999999999743
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=93.58 E-value=0.2 Score=52.26 Aligned_cols=53 Identities=13% Similarity=0.304 Sum_probs=38.1
Q ss_pred cceEEEEEcccchhc---ccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 232 TRVTYLVLDEADRMF---DMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml---~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
...+++|+|.+.++- +..+...+..+...+.++.-+++++|+........++.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~ 233 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASR 233 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHH
Confidence 478899999998754 34456677778888877777788888876655555443
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.11 Score=54.37 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=55.8
Q ss_pred CCCCCcccCCCCHHHHHHHHhC---CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKL---NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~---g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
+|-.+|++++=-....+.|++. -+..|.-++... +--.+-+|++||+|+|||+..- .+...+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllAk-AiA~e~----------- 239 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLAK-AVAATI----------- 239 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHHH-HHHHHH-----------
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHHH-HHHHHh-----------
Confidence 4556799988666666666542 011111111110 0123789999999999997432 222222
Q ss_pred CCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 195 SPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+.. ++.+..-+|.... .+...+..++... ....-++|.+||+|.++.
T Consensus 240 ~~~-~~~v~~s~l~sk~~Gese~~ir~~F~~A-----~~~~P~IifiDEiDai~~ 288 (437)
T 4b4t_L 240 GAN-FIFSPASGIVDKYIGESARIIREMFAYA-----KEHEPCIIFMDEVDAIGG 288 (437)
T ss_dssp TCE-EEEEEGGGTCCSSSSHHHHHHHHHHHHH-----HHSCSEEEEEECCCSSSC
T ss_pred CCC-EEEEehhhhccccchHHHHHHHHHHHHH-----HhcCCceeeeeccccccc
Confidence 222 3333333333222 2223333333321 123446899999999874
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.50 E-value=0.12 Score=51.73 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=14.0
Q ss_pred CEEEEcCCCCCchhhh
Q 042373 160 DSVAITETGSGKTLAF 175 (494)
Q Consensus 160 dvi~~a~TGSGKTlaf 175 (494)
.++++||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999743
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.19 Score=52.98 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=58.7
Q ss_pred CCCCCcccCCCCHHHHHHHHhC-C--CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKL-N--HENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~-g--~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
.|=.+|++++=-..+.+.|++. - +..|--++..- +--.+.+|+++|+|+|||+..- .+...+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLAk-AiA~e~----------- 267 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCAR-AVANRT----------- 267 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHHH-HHHHHH-----------
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHHH-HHHhcc-----------
Confidence 4557899998777777777653 1 11111111110 1124789999999999997332 222222
Q ss_pred CCeEEEEccchhHHHhh-h-hhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 195 SPVGLVMAPTGELVRQQ-V-RRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi-~-TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+. .++.+..-+|.... + +...+..++... ....-++|++||+|.++.
T Consensus 268 ~~-~fi~vs~s~L~sk~vGesek~ir~lF~~A-----r~~aP~IIfiDEiDai~~ 316 (467)
T 4b4t_H 268 DA-TFIRVIGSELVQKYVGEGARMVRELFEMA-----RTKKACIIFFDEIDAVGG 316 (467)
T ss_dssp TC-EEEEEEGGGGCCCSSSHHHHHHHHHHHHH-----HHTCSEEEEEECCTTTSB
T ss_pred CC-CeEEEEhHHhhcccCCHHHHHHHHHHHHH-----HhcCCceEeecccccccc
Confidence 22 24444444444332 2 333344444321 122346899999999874
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.31 Score=48.68 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCCCchhhh
Q 042373 158 GLDSVAITETGSGKTLAF 175 (494)
Q Consensus 158 grdvi~~a~TGSGKTlaf 175 (494)
++.++++||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 357999999999999643
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=93.24 E-value=0.072 Score=52.36 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=36.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
+-+++++|+|+|||...- .+...+ +...+.+ ..-+|.... .+++.+..++.... ....-..-.+
T Consensus 37 ~~lLl~GppGtGKT~la~-aiA~~l-----------~~~~i~v-~~~~l~~~~~g~~~~~i~~~f~~a~-~~~~~~~~~v 102 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE-LVFRKM-----------GINPIMM-SAGELESGNAGEPAKLIRQRYREAA-EIIRKGNMCC 102 (293)
T ss_dssp SEEEEEECTTSCHHHHHH-HHHHHH-----------TCCCEEE-EHHHHHCC---HHHHHHHHHHHHHH-HHHTTSSCCC
T ss_pred eEEEEECCCCCCHHHHHH-HHHHHh-----------CCCEEEE-eHHHhhhccCchhHHHHHHHHHHHH-HHHhcCCCeE
Confidence 568999999999996332 233332 2122333 223333222 24444544443320 0001223468
Q ss_pred EEEcccchhcc
Q 042373 237 LVLDEADRMFD 247 (494)
Q Consensus 237 lVlDEaD~ml~ 247 (494)
|+|||+|.+..
T Consensus 103 l~iDEiD~~~~ 113 (293)
T 3t15_A 103 LFINDLDAGAG 113 (293)
T ss_dssp EEEECCC----
T ss_pred EEEechhhhcC
Confidence 99999999875
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.22 E-value=0.19 Score=47.78 Aligned_cols=53 Identities=19% Similarity=0.148 Sum_probs=30.0
Q ss_pred CCCCcccCCCCHHHHHHHHhCC--CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhh
Q 042373 119 PIKTWRQTGLTTKILETFSKLN--HENPVAIQAPASALIISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g--~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTla 174 (494)
+-.+|+++.-.+.+++.|..+- +..|..++... +...+.+++++|+|+|||..
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHH
Confidence 3467888877777776665420 11111111110 11245799999999999964
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=93.12 E-value=0.23 Score=45.95 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=24.8
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT 204 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT 204 (494)
|+=.+++++.|||||.+.+- ++.+.... +-+++++.|.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~-~a~r~~~~--------g~kV~v~k~~ 45 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIR-RIRRAKIA--------KQKIQVFKPE 45 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHH-HHHHHHHT--------TCCEEEEEEC
T ss_pred CEEEEEECCCCCcHHHHHHH-HHHHHHHC--------CCEEEEEEec
Confidence 44467789999999976554 34333322 5578888665
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.24 Score=46.09 Aligned_cols=72 Identities=18% Similarity=0.123 Sum_probs=43.4
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc---hhHHHhhhhhhH----------HHHHHHh
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT---GELVRQQVRRGR----------MIDLLCK 223 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT---reLa~Qi~TPgr----------l~dll~~ 223 (494)
.|+=.+++++.|||||.-.+- .+.+.... +.+++++.|. |.. ..+.+-.. +.+++.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~-~i~n~~~~--------~~kvl~~kp~~D~R~~-~~i~S~~g~~~~A~~~~~~~d~~~- 87 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMR-RVRRFQIA--------QYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQ- 87 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHH-HHHHHHHT--------TCCEEEEEETTCCCGG-GSCCHHHHHHSEEEEESSGGGGHH-
T ss_pred ceEEEEEECCCCCcHHHHHHH-HHHHHHHc--------CCeEEEEccccCccch-hhhhhccCCcccceecCCHHHHHH-
Confidence 366678889999999954433 34333322 4578999887 644 33422111 111111
Q ss_pred cCcceecccceEEEEEcccchh
Q 042373 224 NGVKITNLTRVTYLVLDEADRM 245 (494)
Q Consensus 224 ~~~~~~~l~~l~~lVlDEaD~m 245 (494)
..+++++|++|||+-+
T Consensus 88 ------~~~~~DvIlIDEaQFf 103 (195)
T 1w4r_A 88 ------EALGVAVIGIDEGQFF 103 (195)
T ss_dssp ------HHHTCSEEEESSGGGC
T ss_pred ------hccCCCEEEEEchhhh
Confidence 1346789999999976
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.88 E-value=0.3 Score=51.92 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=14.8
Q ss_pred CCEEEEcCCCCCchhhh
Q 042373 159 LDSVAITETGSGKTLAF 175 (494)
Q Consensus 159 rdvi~~a~TGSGKTlaf 175 (494)
+.++++||+|+|||...
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 68999999999999743
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.21 Score=47.61 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.+..+++++++|+|||.
T Consensus 28 ~~~~vll~G~~GtGKt~ 44 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKEL 44 (265)
T ss_dssp SCSCEEEECCTTSCHHH
T ss_pred CCCCEEEECCCCCcHHH
Confidence 46899999999999996
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.19 Score=52.37 Aligned_cols=109 Identities=13% Similarity=0.138 Sum_probs=55.6
Q ss_pred CCCCCcccCCCCHHHHHHHHhC---CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKL---NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~---g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
.|-.+|+++|=-..+.+.|++. -+..|.-++..-+ --.+-+|+++|+|+|||+..- .+...+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLAk-AiA~e~----------- 240 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLAK-AVANQT----------- 240 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHHH-HHHHHH-----------
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHHH-HHHHHh-----------
Confidence 4567899997555555555432 1122222222111 123789999999999997322 222222
Q ss_pred CCeEEEEccchhHHHhh-h-hhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 195 SPVGLVMAPTGELVRQQ-V-RRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi-~-TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+.. ++.+..-+|.... + +...+..++... .-..-++|.+||+|.++.
T Consensus 241 ~~~-fi~v~~s~l~sk~vGesek~ir~lF~~A-----r~~aP~IIfiDEiDai~~ 289 (437)
T 4b4t_I 241 SAT-FLRIVGSELIQKYLGDGPRLCRQIFKVA-----GENAPSIVFIDEIDAIGT 289 (437)
T ss_dssp TCE-EEEEESGGGCCSSSSHHHHHHHHHHHHH-----HHTCSEEEEEEEESSSSC
T ss_pred CCC-EEEEEHHHhhhccCchHHHHHHHHHHHH-----HhcCCcEEEEehhhhhcc
Confidence 222 3333333333222 2 333333333321 112336899999999874
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.13 E-value=0.46 Score=49.54 Aligned_cols=109 Identities=14% Similarity=0.122 Sum_probs=56.6
Q ss_pred CCCCCcccCCCCHHHHHHHHhC---CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 118 KPIKTWRQTGLTTKILETFSKL---NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 118 ~pi~~f~~l~L~~~ll~~l~~~---g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
.|-.+|++.|=-..+.+.|.+. -+..|--++..- +--.|-++++||+|+|||+..- .+...+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~lak-AiA~~~----------- 230 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLVK-AVANST----------- 230 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHHH-HHHHHH-----------
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHHH-HHHHHh-----------
Confidence 3456899987666666665442 011111111110 0123679999999999997432 222222
Q ss_pred CCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 195 SPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+.. ++.+..-++.... .++..+.+++... .-..-+++++||+|.++.
T Consensus 231 ~~~-~~~v~~~~l~~~~~Ge~e~~ir~lF~~A-----~~~aP~IifiDEiD~i~~ 279 (428)
T 4b4t_K 231 KAA-FIRVNGSEFVHKYLGEGPRMVRDVFRLA-----RENAPSIIFIDEVDSIAT 279 (428)
T ss_dssp TCE-EEEEEGGGTCCSSCSHHHHHHHHHHHHH-----HHTCSEEEEEECTHHHHC
T ss_pred CCC-eEEEecchhhccccchhHHHHHHHHHHH-----HHcCCCeeechhhhhhhc
Confidence 222 3333333333222 3444455555431 112336889999999874
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=92.11 E-value=0.14 Score=60.36 Aligned_cols=64 Identities=25% Similarity=0.154 Sum_probs=49.3
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.+|+-|.++|-.- ++++++.|.-|||||.+.+--++..+..... ....-..|+|++|+..|..+
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~---~~~~~~il~~Tft~~aa~e~ 73 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN---PIDVDRLLVVTFTNASAAEM 73 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS---CCCGGGEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC---CCCccceEEEeccHHHHHHH
Confidence 6899999998654 8899999999999998877666766654211 01134799999999988877
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.00 E-value=0.41 Score=46.49 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=46.8
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
.++++||+|+|||...- -+...+.... . ....+.+.+........ .-..+.++..... ....+-.++|+
T Consensus 48 ~~ll~G~~G~GKT~la~-~l~~~l~~~~-----~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~vlii 116 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL-ALARELFGEN-----W-RHNFLELNASDERGINV-IREKVKEFARTKP---IGGASFKIIFL 116 (327)
T ss_dssp EEEEESCTTSSHHHHHH-HHHHHHHGGG-----H-HHHEEEEETTCHHHHHT-THHHHHHHHHSCC---GGGCSCEEEEE
T ss_pred eEEEECcCCCCHHHHHH-HHHHHhcCCc-----c-cCceEEeeccccCchHH-HHHHHHHHHhhCC---cCCCCCeEEEE
Confidence 69999999999996432 2333332110 0 11233333322111110 0011222222111 11145679999
Q ss_pred cccchhcccCChhHHHHHHHhhcCCCcEEEe
Q 042373 240 DEADRMFDMGFEPQITRIVQNIRPDRQAVLF 270 (494)
Q Consensus 240 DEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilf 270 (494)
||+|.|... ....+..+++..+....+|+.
T Consensus 117 De~~~l~~~-~~~~L~~~le~~~~~~~~i~~ 146 (327)
T 1iqp_A 117 DEADALTQD-AQQALRRTMEMFSSNVRFILS 146 (327)
T ss_dssp ETGGGSCHH-HHHHHHHHHHHTTTTEEEEEE
T ss_pred eCCCcCCHH-HHHHHHHHHHhcCCCCeEEEE
Confidence 999998642 233444455544444444443
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=91.87 E-value=0.21 Score=49.30 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=22.9
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
....+|++||+|.|... ....+..+++..+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 35579999999998642 2234445555544444444433
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=91.85 E-value=0.52 Score=47.30 Aligned_cols=78 Identities=22% Similarity=0.217 Sum_probs=40.3
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh--h-hh-hhHHHHHHHhcCcceeccc
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ--Q-VR-RGRMIDLLCKNGVKITNLT 232 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q--i-~T-Pgrl~dll~~~~~~~~~l~ 232 (494)
.++.+++++|+|+|||...- .+...+. .|...+-+ -++... + .+ .+.+..++..... .+...
T Consensus 50 ~~~~vll~GppGtGKT~la~--~ia~~~~---------~~~~~~~~--~~l~~~~~~g~~~~~~~~~~~~~~~~-~~~~~ 115 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE--TLARLLD---------VPFTMADA--TTLTEAGYVGEDVENIIQKLLQKCDY-DVQKA 115 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH--HHHHHTT---------CCEEEEEH--HHHTTCHHHHHHHTHHHHHHHHHTTT-CHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH--HHHHHcC---------CCEEEech--HHhcccccccccHHHHHHHHHHHhhh-hHHhc
Confidence 45789999999999997432 2333321 33333322 233221 1 11 2233344433211 11112
Q ss_pred ceEEEEEcccchhccc
Q 042373 233 RVTYLVLDEADRMFDM 248 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~ 248 (494)
.-.+|+|||+|.|...
T Consensus 116 ~~~vl~lDEid~l~~~ 131 (363)
T 3hws_A 116 QRGIVYIDQIDKISRK 131 (363)
T ss_dssp HHCEEEEECHHHHCCC
T ss_pred CCcEEEEeChhhhccc
Confidence 3458999999998754
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=91.83 E-value=0.13 Score=56.46 Aligned_cols=62 Identities=16% Similarity=0.032 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.+++-|.+++-. .+..+++.|..|||||.+.+--+...+.... ......|+|+.|+..|.++
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-----~~~~~IL~lTfT~~Aa~em 63 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREM 63 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHH
Confidence 478999999865 3678999999999999876555554443311 0134699999999888776
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=91.73 E-value=0.22 Score=55.29 Aligned_cols=63 Identities=17% Similarity=0.040 Sum_probs=46.4
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
..+++-|.+++-. ....+++.|..|||||.+..--+...+.... ......|+|+.|+..|.++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-----~~p~~IL~vTFTnkAA~Em 72 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-----VAPWNILAITFTNKAAREM 72 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCGGGEEEEESSHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHH
Confidence 4689999999865 3578999999999999876555554444321 1134699999999887775
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=91.35 E-value=0.26 Score=47.51 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=30.6
Q ss_pred CCCCcccCCCCHHHHHHHHhCC--CCCCChhHHHHHHHHH--cCCCEEEEcCCCCCchhh
Q 042373 119 PIKTWRQTGLTTKILETFSKLN--HENPVAIQAPASALII--SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g--~~~ptpiQ~~aip~il--~grdvi~~a~TGSGKTla 174 (494)
|-.+|+++.-.+.+...++.+- |.. ...+..+- -.+.+++++|+|+|||..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 4567888877777777665431 111 01111110 124599999999999963
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=91.05 E-value=0.67 Score=45.98 Aligned_cols=38 Identities=18% Similarity=0.395 Sum_probs=23.9
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEe
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLF 270 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilf 270 (494)
...+++|+||+|.|... ....+..+++..+....+++.
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEE
Confidence 35789999999988642 234455556655544555444
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=90.94 E-value=0.47 Score=53.37 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=60.7
Q ss_pred CCCCCCCcccCCCCHHHHHHHHhC-CC--CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCC
Q 042373 116 APKPIKTWRQTGLTTKILETFSKL-NH--ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPG 192 (494)
Q Consensus 116 ~P~pi~~f~~l~L~~~ll~~l~~~-g~--~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~ 192 (494)
+..|-.+|++++.-..+.+.|++. -+ ..|.-++..- +-..+-+++.+|.|+|||+.. ..+....
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA-----kaiA~e~----- 535 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA-----KAIANEC----- 535 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH-----HHHHHTT-----
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH-----HHHHHHh-----
Confidence 345667899999888888888764 11 1111111100 012367999999999999632 2222211
Q ss_pred CCCCeEEEEccchhHHHhh-hh-hhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 193 DDSPVGLVMAPTGELVRQQ-VR-RGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 193 ~~~p~aLIl~PTreLa~Qi-~T-Pgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+ .-+|.+-.-+|.... +. ...+..++..- .-..-++|+|||+|.++.
T Consensus 536 --~-~~f~~v~~~~l~s~~vGese~~vr~lF~~A-----r~~~P~IifiDEiDsl~~ 584 (806)
T 3cf2_A 536 --Q-ANFISIKGPELLTMWFGESEANVREIFDKA-----RQAAPCVLFFDELDSIAK 584 (806)
T ss_dssp --T-CEEEECCHHHHHTTTCSSCHHHHHHHHHHH-----HTTCSEEEECSCGGGCC-
T ss_pred --C-CceEEeccchhhccccchHHHHHHHHHHHH-----HHcCCceeechhhhHHhh
Confidence 2 234445445554433 22 23344444321 112336899999999874
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=0.45 Score=53.52 Aligned_cols=71 Identities=14% Similarity=0.174 Sum_probs=42.8
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
+.+|+++|.|+|||+. ...+.... + .-++.+..-+|.... .+..++..++.... ...-.+
T Consensus 239 ~GILL~GPPGTGKT~L-----AraiA~el-------g-~~~~~v~~~~l~sk~~gese~~lr~lF~~A~-----~~~PsI 300 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI-----ARAVANET-------G-AFFFLINGPEIMSKLAGESESNLRKAFEEAE-----KNAPAI 300 (806)
T ss_dssp CEEEEECCTTSCHHHH-----HHHHHTTT-------T-CEEEEEEHHHHHSSCTTHHHHHHHHHHHHHT-----TSCSEE
T ss_pred CeEEEECCCCCCHHHH-----HHHHHHHh-------C-CeEEEEEhHHhhcccchHHHHHHHHHHHHHH-----HcCCeE
Confidence 6899999999999973 33333321 2 234555555555433 23344555554321 223468
Q ss_pred EEEcccchhcc
Q 042373 237 LVLDEADRMFD 247 (494)
Q Consensus 237 lVlDEaD~ml~ 247 (494)
|+|||+|.++.
T Consensus 301 IfIDEiDal~~ 311 (806)
T 3cf2_A 301 IFIDELDAIAP 311 (806)
T ss_dssp EEEESGGGTCC
T ss_pred EEEehhccccc
Confidence 99999999984
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=90.82 E-value=0.51 Score=46.98 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
++.+++.||+|+|||..
T Consensus 70 ~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp TCEEEEEESTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 46899999999999974
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=90.58 E-value=0.95 Score=42.66 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=25.5
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG 205 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr 205 (494)
|+=.+++++-|||||.+.+--+.+.... +-+++|+.|..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~---------g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA---------KQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---------TCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---------CCEEEEEEecc
Confidence 3434577888999997655544444332 55788888764
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=90.51 E-value=0.7 Score=42.32 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
.|.-+++.+++|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 3567888999999999543
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=90.43 E-value=0.38 Score=46.98 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=37.2
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYL 237 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~l 237 (494)
.+.++++|++|+|||...- .+...+ . .+...+-++.. ..++.+...+.. .+..-.+|
T Consensus 38 ~~~vll~G~~GtGKT~la~-~i~~~~-~---------~~~~~~~~~~~------~~~~~l~~~l~~------~~~~~~~l 94 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH-VIAHEL-G---------VNLRVTSGPAI------EKPGDLAAILAN------SLEEGDIL 94 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH-HHHHHH-T---------CCEEEECTTTC------CSHHHHHHHHTT------TCCTTCEE
T ss_pred CCcEEEECCCCCCHHHHHH-HHHHHh-C---------CCEEEEecccc------CChHHHHHHHHH------hccCCCEE
Confidence 3789999999999996432 122222 1 22222222221 223344444432 13345689
Q ss_pred EEcccchhc
Q 042373 238 VLDEADRMF 246 (494)
Q Consensus 238 VlDEaD~ml 246 (494)
+|||+|.|.
T Consensus 95 ~lDEi~~l~ 103 (324)
T 1hqc_A 95 FIDEIHRLS 103 (324)
T ss_dssp EETTTTSCC
T ss_pred EEECCcccc
Confidence 999999876
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.42 E-value=0.37 Score=50.46 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=14.1
Q ss_pred CCEEEEcCCCCCchhh
Q 042373 159 LDSVAITETGSGKTLA 174 (494)
Q Consensus 159 rdvi~~a~TGSGKTla 174 (494)
..+++++|+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 4799999999999974
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=90.37 E-value=0.24 Score=52.38 Aligned_cols=107 Identities=17% Similarity=0.214 Sum_probs=51.2
Q ss_pred CCCcccCCCCHHHHHHHHhC--CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCe
Q 042373 120 IKTWRQTGLTTKILETFSKL--NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPV 197 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~--g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~ 197 (494)
-.+|+++.=....++.|+.. .+..|..++... +--.+.+++++|+|+|||+..- .+..-.. .|.
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~Lar--aia~~~~---------~~f 77 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLLAR--AVAGEAN---------VPF 77 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHHHH--HHHHHHT---------CCE
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHHHH--HHHHHcC---------CCe
Confidence 45788876666665555432 011111110000 0012569999999999997432 2222111 222
Q ss_pred EEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 198 GLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 198 aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
+.+ ...++.... ....++..++... ....-++|+|||+|.|..
T Consensus 78 -~~i-s~~~~~~~~~g~~~~~~r~lf~~A-----~~~~p~ILfIDEid~l~~ 122 (476)
T 2ce7_A 78 -FHI-SGSDFVELFVGVGAARVRDLFAQA-----KAHAPCIVFIDEIDAVGR 122 (476)
T ss_dssp -EEE-EGGGTTTCCTTHHHHHHHHHHHHH-----HHTCSEEEEEETGGGTCC
T ss_pred -eeC-CHHHHHHHHhcccHHHHHHHHHHH-----HhcCCCEEEEechhhhhh
Confidence 222 222222211 1223344444331 112346899999999864
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=90.14 E-value=0.68 Score=48.25 Aligned_cols=105 Identities=11% Similarity=0.051 Sum_probs=54.4
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHH----cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCC
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALII----SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDD 194 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il----~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~ 194 (494)
|-..|+++.-...+++.+... +..+. .++.+++++|+|+|||.... .+...+ ..
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~------------~~~~~~~~~~~~~iLl~GppGtGKT~la~-ala~~l-~~-------- 89 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVI------------VELIKSKKMAGRAVLLAGPPGTGKTALAL-AIAQEL-GS-------- 89 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHH------------HHHHHTTCCTTCEEEEECCTTSSHHHHHH-HHHHHH-CT--------
T ss_pred hhhchhhccCHHHHHHHHHHH------------HHHHHhCCCCCCeEEEECCCcCCHHHHHH-HHHHHh-CC--------
Confidence 445577776666666554421 11122 34689999999999996443 233332 11
Q ss_pred CCeEEEEccchhHHH-hhhhhhHHHHHHHhcCcceecccceEEEEEcccchhccc
Q 042373 195 SPVGLVMAPTGELVR-QQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDM 248 (494)
Q Consensus 195 ~p~aLIl~PTreLa~-Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~ 248 (494)
....+.+.. -++.. .+...+.+...+..... .....-.+|++||+|.++..
T Consensus 90 ~~~~~~~~~-~~~~~~~~~~~~~~~~~f~~a~~--~~~~~~~il~iDEid~l~~~ 141 (456)
T 2c9o_A 90 KVPFCPMVG-SEVYSTEIKKTEVLMENFRRAIG--LRIKETKEVYEGEVTELTPC 141 (456)
T ss_dssp TSCEEEEEG-GGGCCSSSCHHHHHHHHHHHTEE--EEEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEeH-HHHHHHhhhhhHHHHHHHHHHHh--hhhcCCcEEEEechhhcccc
Confidence 112222222 22221 12222335555543210 12345578999999998853
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=89.82 E-value=0.34 Score=45.61 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=32.2
Q ss_pred HHHHHHHHhCCCCCCChhHHHHHHHHHcC----CCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 130 TKILETFSKLNHENPVAIQAPASALIISG----LDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 130 ~~ll~~l~~~g~~~ptpiQ~~aip~il~g----rdvi~~a~TGSGKTlafllpil~~l 183 (494)
..|.+-|+-.|+ .+... ..++..++.+ +.+++.+|.|+|||..+ ..++..+
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 356666665554 23333 4555666665 35899999999999643 5566555
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.81 E-value=0.22 Score=48.45 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=26.1
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHH-HHHHHH--HcCCCEEEEcCCCCCchhh
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQA-PASALI--ISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~-~aip~i--l~grdvi~~a~TGSGKTla 174 (494)
|-.+|++++-...+.+.|.+. + ..|+.. .++..+ .-.+.+++++|+|+|||..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~-i--~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMA-I--LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHH-H--THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHH-H--HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 446799998777777777642 1 111111 111111 1124499999999999973
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=89.78 E-value=0.87 Score=47.28 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=21.2
Q ss_pred HHHHHcC----CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 152 SALIISG----LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 152 ip~il~g----rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
+-.++.| .=+++.|++|+|||. |++-+..++.
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~-lal~ia~~~a 225 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTA-FALTIAQNAA 225 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHH-HHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHH-HHHHHHHHHH
Confidence 4445533 456788999999994 5555555554
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=89.78 E-value=0.5 Score=44.72 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=43.8
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc---hhHHHhhhhhh----------HHHHHHHhc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT---GELVRQQVRRG----------RMIDLLCKN 224 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT---reLa~Qi~TPg----------rl~dll~~~ 224 (494)
|.=.+++++-|||||...+-- +.+.... +.+++|+.|. |.....+++.- ...+++..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~-~~r~~~~--------g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~- 97 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRR-LRRGIYA--------KQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTH- 97 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHH-HHHHHHT--------TCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGS-
T ss_pred ceEEEEECCCCCCHHHHHHHH-HHHHHHc--------CCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHH-
Confidence 455678899999999654433 4444332 5578888884 44333331110 01111110
Q ss_pred CcceecccceEEEEEcccchhcccCChhHHHHHH
Q 042373 225 GVKITNLTRVTYLVLDEADRMFDMGFEPQITRIV 258 (494)
Q Consensus 225 ~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il 258 (494)
-..++.+|++|||+-+- ....+++..+.
T Consensus 98 -----i~~~~dvV~IDEaQFf~-~~~v~~l~~la 125 (219)
T 3e2i_A 98 -----DLTNVDVIGIDEVQFFD-DEIVSIVEKLS 125 (219)
T ss_dssp -----CCTTCSEEEECCGGGSC-THHHHHHHHHH
T ss_pred -----HhcCCCEEEEechhcCC-HHHHHHHHHHH
Confidence 02467899999998544 33444454444
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=89.75 E-value=0.31 Score=52.22 Aligned_cols=18 Identities=28% Similarity=0.180 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.|..+++++|+|+|||..
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 478899999999999963
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=89.20 E-value=1.2 Score=46.47 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=33.7
Q ss_pred ceEEEEEcccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHH
Q 042373 233 RVTYLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILAR 283 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~ 283 (494)
..+++|+|.+-++.. ......+..+...+.++.-+++++||........++
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~ 233 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQAL 233 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHH
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHH
Confidence 478999999976542 123345666666666777777888887665554443
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=89.15 E-value=0.71 Score=46.55 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=24.1
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~ 202 (494)
|.=+++.|++|+|||. |++-+..++... +..++|++
T Consensus 46 G~LiiIaG~pG~GKTt-~al~ia~~~a~~--------g~~Vl~fS 81 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTS-LMMNMVLSALND--------DRGVAVFS 81 (338)
T ss_dssp TCEEEEEECTTSCHHH-HHHHHHHHHHHT--------TCEEEEEE
T ss_pred CcEEEEEeCCCCCHHH-HHHHHHHHHHHc--------CCeEEEEe
Confidence 4557788999999995 555555555432 44677775
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.89 E-value=0.77 Score=56.39 Aligned_cols=109 Identities=12% Similarity=0.160 Sum_probs=61.8
Q ss_pred HHHHHc------CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc----hhHHHhhh---------
Q 042373 152 SALIIS------GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT----GELVRQQV--------- 212 (494)
Q Consensus 152 ip~il~------grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT----reLa~Qi~--------- 212 (494)
+-.++. |+.+++++|+|+|||...+--+.... .+ |.+++++... ..++...+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~-~~--------G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~ 1485 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-RE--------GKTCAFIDAEHALDPIYARKLGVDIDNLLCS 1485 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH-TT--------TCCEEEECTTSCCCHHHHHHTTCCTTTCEEE
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH-Hc--------CCcEEEEEcccccCHHHHHHcCCCchhceee
Confidence 666776 68999999999999976544444333 21 5567777644 22233221
Q ss_pred ---hhhHHHHHHHhcCcceecccceEEEEEcccchhccc-------C---C-------hhHHHHHHHhhcCCCcEEEecC
Q 042373 213 ---RRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDM-------G---F-------EPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 213 ---TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~-------g---f-------~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
+-.++...+.. ...-..+++||+||.+.++.. + . ...+..+...+....-+++|+.
T Consensus 1486 ~~~~~E~~l~~~~~----lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1486 QPDTGEQALEICDA----LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp CCSSHHHHHHHHHH----HHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCChHHHHHHHHHH----HHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 11233333332 111246889999999866641 1 1 1234445555555555666665
Q ss_pred C
Q 042373 273 T 273 (494)
Q Consensus 273 T 273 (494)
.
T Consensus 1562 q 1562 (2050)
T 3cmu_A 1562 Q 1562 (2050)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=88.87 E-value=1.5 Score=41.92 Aligned_cols=40 Identities=20% Similarity=0.108 Sum_probs=26.3
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG 205 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr 205 (494)
.|+=.+++++-|||||.+.+--+.+.... +-+++|+-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~---------g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIA---------QYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTT---------TCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHC---------CCeEEEEeecC
Confidence 46656777888999997655544444322 55677777653
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=88.77 E-value=0.49 Score=45.78 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=30.2
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l 183 (494)
.+|+++--.+.+++.|... +.. -....++++||+|+|||... .-+...+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~-l~~------------~~~~~~ll~G~~G~GKt~la-~~l~~~l 62 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGY-VER------------KNIPHLLFSGPPGTGKTATA-IALARDL 62 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTT-TTT------------TCCCCEEEESSSSSSHHHHH-HHHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHH-HhC------------CCCCeEEEECcCCcCHHHHH-HHHHHHh
Confidence 3566666677777777654 211 01235999999999999643 2334443
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=88.50 E-value=8.5 Score=37.24 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=21.9
Q ss_pred EEEEEcccchhcc---cCChhHHHHHHHhhcCCCcEEEe
Q 042373 235 TYLVLDEADRMFD---MGFEPQITRIVQNIRPDRQAVLF 270 (494)
Q Consensus 235 ~~lVlDEaD~ml~---~gf~~~i~~Il~~l~~~~Q~ilf 270 (494)
-+|||||+|.+.. ..+...+..+.... +...+|+.
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~ 176 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFIMS 176 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEE
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEEEE
Confidence 4899999999875 34556666665543 23334443
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=88.29 E-value=0.92 Score=44.98 Aligned_cols=16 Identities=25% Similarity=0.144 Sum_probs=13.5
Q ss_pred CEEEEcCCCCCchhhh
Q 042373 160 DSVAITETGSGKTLAF 175 (494)
Q Consensus 160 dvi~~a~TGSGKTlaf 175 (494)
-++++||+|+|||...
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999643
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=88.28 E-value=0.35 Score=46.91 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=22.5
Q ss_pred ceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 233 RVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 233 ~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
+-.+|||||+|.|.... ...+..+++..+....+|+.+
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 36899999999986432 233444445444444555444
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=88.26 E-value=1.2 Score=45.33 Aligned_cols=76 Identities=11% Similarity=0.140 Sum_probs=43.0
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchh----HHHhh------------hhhhHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGE----LVRQQ------------VRRGRMIDLL 221 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTre----La~Qi------------~TPgrl~dll 221 (494)
|+-+++.+++|+|||. +.+.++..+... +..++++..-.. .+... .+...+.+.+
T Consensus 74 G~li~I~G~pGsGKTt-lal~la~~~~~~--------g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 74 GRITEIYGPESGGKTT-LALAIVAQAQKA--------GGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TSEEEEEESTTSSHHH-HHHHHHHHHHHT--------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CcEEEEEcCCCCChHH-HHHHHHHHHHHC--------CCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 5678889999999995 555555555432 334566543211 11111 1233333433
Q ss_pred HhcCcceecccceEEEEEcccchhc
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml 246 (494)
.. ...-..+++||||....|.
T Consensus 145 ~~----l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 145 EL----LVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp HH----HHTTTCCSEEEEECTTTCC
T ss_pred HH----HHhcCCCCEEEEeChHHhc
Confidence 32 1112357899999999887
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.22 E-value=0.98 Score=47.96 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=28.0
Q ss_pred CCCCcccCCCCHHHHHHHHhCC--CCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhh
Q 042373 119 PIKTWRQTGLTTKILETFSKLN--HENPVAIQAPASALIISGLDSVAITETGSGKTLA 174 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g--~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTla 174 (494)
+-.+|+++.-....+..++..- |..|..++... +--.+.+++++|+|+|||+.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg---~~ip~GvLL~GppGtGKTtL 80 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMG---ARIPKGVLLVGPPGVGKTHL 80 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTS---CCCCSEEEEECSSSSSHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhcc---CCCCceEEEECCCCCCHHHH
Confidence 3457888766666655554320 11111000000 00124599999999999974
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=88.03 E-value=0.72 Score=46.46 Aligned_cols=17 Identities=47% Similarity=0.532 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
...+++++|+|+|||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 56899999999999964
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=87.85 E-value=1.6 Score=49.18 Aligned_cols=82 Identities=18% Similarity=0.155 Sum_probs=34.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----hhhhHHHHHHHhcCcceecccce
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----VRRGRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----~TPgrl~dll~~~~~~~~~l~~l 234 (494)
++++++|++|+|||... --+...+....... .-.+...+.+ +.-.+.... ....++..++..-. ....-
T Consensus 192 ~~vlL~G~pG~GKT~la-~~la~~l~~~~~p~-~l~~~~~~~l-~~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~ 264 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV-EGLAQRIVKGDVPE-GLKGKRIVSL-QMGSLLAGAKYRGEFEERLKAVIQEVV----QSQGE 264 (854)
T ss_dssp CCCEEEECTTSCHHHHH-HHHHHHHHHTCSCT-TSTTCEEEEE-CC-----------CHHHHHHHHHHHHH----TTCSS
T ss_pred CceEEEcCCCCCHHHHH-HHHHHHHhcCCCch-hhcCCeEEEe-ehHHhhccCccchHHHHHHHHHHHHHH----hcCCC
Confidence 58999999999999633 23333443211000 0113333333 333332111 12223444433210 11123
Q ss_pred EEEEEcccchhcc
Q 042373 235 TYLVLDEADRMFD 247 (494)
Q Consensus 235 ~~lVlDEaD~ml~ 247 (494)
.+|++||+|.|..
T Consensus 265 ~iL~IDEi~~l~~ 277 (854)
T 1qvr_A 265 VILFIDELHTVVG 277 (854)
T ss_dssp EEEEECCC-----
T ss_pred eEEEEecHHHHhc
Confidence 5799999999874
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=87.56 E-value=1.6 Score=42.59 Aligned_cols=17 Identities=12% Similarity=-0.023 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|+-++++|+.|+|||.
T Consensus 30 ~~~~v~i~G~~G~GKT~ 46 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSS 46 (350)
T ss_dssp HCSEEEEECCTTSSHHH
T ss_pred cCCeEEEECCCcCCHHH
Confidence 36889999999999996
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=87.40 E-value=0.84 Score=50.63 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCCchhhh
Q 042373 158 GLDSVAITETGSGKTLAF 175 (494)
Q Consensus 158 grdvi~~a~TGSGKTlaf 175 (494)
+.++++++++|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 478999999999999643
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=87.25 E-value=2 Score=44.64 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=21.5
Q ss_pred HHHHHHc----CCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 151 ASALIIS----GLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 151 aip~il~----grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
.+..++. |.=+++.|++|+|||. |++-+...+.
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTt-l~l~ia~~~~ 228 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTA-FALNIAQNVA 228 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHH-HHHHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHH-HHHHHHHHHH
Confidence 3555553 3567788999999995 4454555443
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=87.16 E-value=0.91 Score=45.65 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=13.9
Q ss_pred CCCEEE--EcCCCCCchhh
Q 042373 158 GLDSVA--ITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~--~a~TGSGKTla 174 (494)
++.+++ +|+.|+|||..
T Consensus 50 ~~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp CEEEEEECTTCCSSSHHHH
T ss_pred CCEEEEeCcCcCCCCHHHH
Confidence 346788 89999999964
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=86.51 E-value=1.3 Score=44.54 Aligned_cols=76 Identities=12% Similarity=0.134 Sum_probs=41.1
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc----hhHHHhh------------hhhhHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT----GELVRQQ------------VRRGRMIDLL 221 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT----reLa~Qi------------~TPgrl~dll 221 (494)
|+-+++.+++|||||...+ -++..+... +..++++.-. ...+... .+...+++++
T Consensus 61 G~iv~I~G~pGsGKTtLal-~la~~~~~~--------g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVAL-HAVANAQAA--------GGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TSEEEEEESTTSSHHHHHH-HHHHHHHHT--------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH-HHHHHHHhC--------CCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 5678899999999996443 344333322 3345665422 1112221 1223333333
Q ss_pred HhcCcceecccceEEEEEcccchhc
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml 246 (494)
.. ...-..+++||+|+...++
T Consensus 132 ~~----l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 132 DM----LVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HH----HHTTTCCSEEEEECGGGCC
T ss_pred HH----HHhcCCCCEEEEcChHhhc
Confidence 21 1111347899999999887
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=86.12 E-value=0.57 Score=46.15 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCCCchhh
Q 042373 157 SGLDSVAITETGSGKTLA 174 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTla 174 (494)
.+..+++++++|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 467999999999999963
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=85.77 E-value=1.5 Score=48.70 Aligned_cols=69 Identities=14% Similarity=0.228 Sum_probs=35.8
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-hhhhHHHHHHHhcCcceecccceEEEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-VRRGRMIDLLCKNGVKITNLTRVTYLV 238 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-~TPgrl~dll~~~~~~~~~l~~l~~lV 238 (494)
.++++||||+|||...- .+...+... ..+ +|-+..-++.... ...+.+...+... ...+|+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~--ala~~l~~~------~~~--~i~i~~s~~~~~~~~~~~~l~~~~~~~--------~~~vl~ 584 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR--ALAESIFGD------EES--MIRIDMSEYMEKHSTSGGQLTEKVRRK--------PYSVVL 584 (758)
T ss_dssp EEEEESCTTSSHHHHHH--HHHHHHHSC------TTC--EEEEEGGGGCSSCCCC---CHHHHHHC--------SSSEEE
T ss_pred EEEEECCCCCCHHHHHH--HHHHHhcCC------Ccc--eEEEechhcccccccccchhhHHHHhC--------CCeEEE
Confidence 49999999999997443 333332211 022 3333333333221 1123333444332 235899
Q ss_pred Ecccchhc
Q 042373 239 LDEADRMF 246 (494)
Q Consensus 239 lDEaD~ml 246 (494)
|||+|.+-
T Consensus 585 lDEi~~~~ 592 (758)
T 3pxi_A 585 LDAIEKAH 592 (758)
T ss_dssp EECGGGSC
T ss_pred EeCccccC
Confidence 99999874
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=85.51 E-value=1.9 Score=42.54 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=42.2
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch-h-HHHhhhhhhHHHHHHHhcCcceecccceEEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG-E-LVRQQVRRGRMIDLLCKNGVKITNLTRVTYL 237 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr-e-La~Qi~TPgrl~dll~~~~~~~~~l~~l~~l 237 (494)
..++.||.|+|||..... +...+..-. ...|-.+++-|.. + -+.++ ..+++.+... -...+.+++
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~-la~~~~~~~-----~~~~d~~~l~~~~~~~~id~i---r~li~~~~~~----p~~~~~kvv 86 (305)
T 2gno_A 20 SILINGEDLSYPREVSLE-LPEYVEKFP-----PKASDVLEIDPEGENIGIDDI---RTIKDFLNYS----PELYTRKYV 86 (305)
T ss_dssp EEEEECSSSSHHHHHHHH-HHHHHHTSC-----CCTTTEEEECCSSSCBCHHHH---HHHHHHHTSC----CSSSSSEEE
T ss_pred EEEEECCCCCCHHHHHHH-HHHhCchhh-----ccCCCEEEEcCCcCCCCHHHH---HHHHHHHhhc----cccCCceEE
Confidence 689999999999864433 222221110 1256677777642 1 11111 1233333321 124567999
Q ss_pred EEcccchhccc
Q 042373 238 VLDEADRMFDM 248 (494)
Q Consensus 238 VlDEaD~ml~~ 248 (494)
|+||||+|...
T Consensus 87 iIdead~lt~~ 97 (305)
T 2gno_A 87 IVHDCERMTQQ 97 (305)
T ss_dssp EETTGGGBCHH
T ss_pred EeccHHHhCHH
Confidence 99999998743
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=85.42 E-value=1.5 Score=42.27 Aligned_cols=17 Identities=29% Similarity=0.161 Sum_probs=14.4
Q ss_pred CCEEEEcCCCCCchhhh
Q 042373 159 LDSVAITETGSGKTLAF 175 (494)
Q Consensus 159 rdvi~~a~TGSGKTlaf 175 (494)
..+++++|+|+|||...
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36999999999999643
|
| >1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A* | Back alignment and structure |
|---|
Probab=84.29 E-value=0.8 Score=47.11 Aligned_cols=44 Identities=14% Similarity=0.227 Sum_probs=32.0
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVR 209 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~ 209 (494)
...+++++|+||||||... .+++..+... +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~--------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR--------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT--------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC--------CCcEEEEeCCCchhH
Confidence 4589999999999999864 4455555442 456777778877764
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.15 E-value=1.9 Score=52.99 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=59.0
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh--------------------hhhH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV--------------------RRGR 216 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~--------------------TPgr 216 (494)
.|+++++++++|||||.....-+.+.+.. |-.++++.= -++..++. .-.+
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~---------Ge~~~Fit~-ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~ 1149 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDA-EHALDPIYARKLGVDIDNLLCSQPDTGEQALE 1149 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT---------TCCEEEECT-TSCCCHHHHHHTTCCTTTCEEECCSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc---------CCeEEEEEc-cccHHHHHHHHcCCChhHheeecCcchHHHHH
Confidence 56899999999999997665555554422 445666642 22222210 1123
Q ss_pred HHHHHHhcCcceecccceEEEEEcccchhcc-------cC----------ChhHHHHHHHhhcCCCcEEEecCC
Q 042373 217 MIDLLCKNGVKITNLTRVTYLVLDEADRMFD-------MG----------FEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 217 l~dll~~~~~~~~~l~~l~~lVlDEaD~ml~-------~g----------f~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
+.+.+. .....++||+|+...+.. || +...+..+...+....-+++|+..
T Consensus 1150 i~~~l~-------~~~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~stiI~tN~ 1216 (2050)
T 3cmu_A 1150 ICDALA-------RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1216 (2050)
T ss_dssp HHHHHH-------HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHHH-------HhCCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 333333 245678999999887732 12 224466666666666677777654
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=84.04 E-value=1.5 Score=44.43 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=42.4
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch----hHHHhh------------hhhhHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG----ELVRQQ------------VRRGRMIDLL 221 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr----eLa~Qi------------~TPgrl~dll 221 (494)
|+-+++.+|+|||||. +++.++..+... +..++++.... ..+.++ .+...++.++
T Consensus 61 G~i~~I~GppGsGKST-Lal~la~~~~~~--------gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTT-LALHAIAEAQKM--------GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TEEEEEEESTTSSHHH-HHHHHHHHHHHT--------TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHH-HHHHHHHHHHhc--------CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 4678889999999995 455555554332 34566665432 222222 1222222332
Q ss_pred HhcCcceecccceEEEEEcccchhcc
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
.. ...-..++++|+|.+-.++.
T Consensus 132 ~~----l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 132 DE----LVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HH----HHHTSCCSEEEEECTTTCCC
T ss_pred HH----HhhhcCCCeEEehHhhhhcC
Confidence 21 11124578999999877763
|
| >2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.86 E-value=2.3 Score=39.22 Aligned_cols=112 Identities=10% Similarity=0.060 Sum_probs=71.1
Q ss_pred CChhHHHHHHHHHcCC--CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--------hh
Q 042373 144 PVAIQAPASALIISGL--DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--------VR 213 (494)
Q Consensus 144 ptpiQ~~aip~il~gr--dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--------~T 213 (494)
.++-|..++..++..+ =.++.+.-|++||...+--++..-.++ |..+.||+|+..-.... .|
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~--------Gr~V~vLAp~~~s~~~l~~~~~l~~~t 106 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQ--------GREVQIIAADRRSQMNMKQDERLSGEL 106 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHT--------TCCEEEECSTTHHHHHHSCTTTCSSCS
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhc--------CeEEEEEcCchHHHHHHHhhcCcCcce
Confidence 3467889999887554 445568999999988765555444443 77899999998766655 22
Q ss_pred hhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHh-hcCCCcEEEecC
Q 042373 214 RGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQN-IRPDRQAVLFSP 272 (494)
Q Consensus 214 Pgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~-l~~~~Q~ilfSA 272 (494)
..+ ..+.... ..|..=+.+|||||-+|.- .++..++.. ...+.|+||+--
T Consensus 107 ~t~--~~ll~~~---~~~tp~s~lIVD~AekLS~----kE~~~Lld~A~~~naqvvll~~ 157 (189)
T 2l8b_A 107 ITG--RRQLLEG---MAFTPGSTVIVDQGEKLSL----KETLTLLDGAARHNVQVLITDS 157 (189)
T ss_dssp SST--TTTTTTS---CCCCCCCEEEEEESSSHHH----HHHHHHHHHHHHTTCCEEEEES
T ss_pred eeh--hhhhcCC---CCCCCCCEEEEechhhcCH----HHHHHHHHHHHhcCCEEEEeCC
Confidence 222 1122221 1234445899999998763 344444443 345678777643
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=82.59 E-value=5.8 Score=38.79 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCCCchhhhH
Q 042373 157 SGLDSVAITETGSGKTLAFL 176 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafl 176 (494)
.|+-+++++++|+|||....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46778889999999997443
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=82.56 E-value=4.4 Score=40.38 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=41.6
Q ss_pred ceEEEEEcccchhc-ccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh---cCCccceeecc
Q 042373 233 RVTYLVLDEADRMF-DMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK---TNVCNLSIANS 295 (494)
Q Consensus 233 ~l~~lVlDEaD~ml-~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~---~g~~~ILVaTd 295 (494)
..+++++|.+.++- +......+..+...+.++..++++.++....+...++. .-.+.++|.|-
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTK 277 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTK 277 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEEC
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 45678899987653 23345566667777778888888988877776666554 23455566554
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=82.30 E-value=4.4 Score=36.65 Aligned_cols=19 Identities=32% Similarity=0.256 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCCchhhhH
Q 042373 158 GLDSVAITETGSGKTLAFL 176 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafl 176 (494)
|.=+++.+++|+|||....
T Consensus 20 G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp TSEEEEECSTTSSHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4667889999999996443
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=81.99 E-value=2.3 Score=43.81 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCCCchhhh
Q 042373 158 GLDSVAITETGSGKTLAF 175 (494)
Q Consensus 158 grdvi~~a~TGSGKTlaf 175 (494)
|.-+++++++|||||...
T Consensus 178 Gei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLC 195 (400)
T ss_dssp TSEEEEEESTTSSHHHHH
T ss_pred CcEEEEEcCCCCChHHHH
Confidence 356788999999999643
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=81.86 E-value=1.6 Score=46.40 Aligned_cols=53 Identities=15% Similarity=0.267 Sum_probs=28.8
Q ss_pred cceEEEEEcccchhcc-cCChhHHHHHHHhhc------CCCcEEEecCCCChHHHHHHHh
Q 042373 232 TRVTYLVLDEADRMFD-MGFEPQITRIVQNIR------PDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~-~gf~~~i~~Il~~l~------~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
+.++++++|=+-++-. ......+..+...++ +..-++.+++|........++.
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~ 433 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHH
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHH
Confidence 4567899998876532 112223333333222 2233667888877665555543
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=80.65 E-value=3.8 Score=37.76 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCCCchhh
Q 042373 158 GLDSVAITETGSGKTLA 174 (494)
Q Consensus 158 grdvi~~a~TGSGKTla 174 (494)
|.-+++.|++|+|||..
T Consensus 30 G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TCEEEEECCTTSSHHHH
T ss_pred CeEEEEEeCCCCCHHHH
Confidence 56788999999999953
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=80.44 E-value=3.2 Score=41.91 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=42.4
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc----hhHHHhh------------hhhhHHHHHH
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT----GELVRQQ------------VRRGRMIDLL 221 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT----reLa~Qi------------~TPgrl~dll 221 (494)
|+-+++.+++|+|||... +-++..+... +..++++.-. ...+... .+...+.+++
T Consensus 63 G~ii~I~G~pGsGKTtLa-l~la~~~~~~--------g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLT-LQVIAAAQRE--------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TSEEEEECSTTSSHHHHH-HHHHHHHHHT--------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHHHC--------CCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 577899999999999644 4444444332 3356666541 2222221 1223333333
Q ss_pred HhcCcceecccceEEEEEcccchhc
Q 042373 222 CKNGVKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 222 ~~~~~~~~~l~~l~~lVlDEaD~ml 246 (494)
.. ...-..+++||||....|.
T Consensus 134 ~~----l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 134 DA----LARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp HH----HHHHTCCSEEEEECGGGCC
T ss_pred HH----HHhccCCCEEEEcCHHHhc
Confidence 21 1112357899999999887
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 494 | ||||
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 8e-23 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 1e-21 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 2e-19 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 6e-19 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 2e-18 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 1e-17 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 8e-14 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 8e-14 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 9e-14 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 2e-13 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 3e-11 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 4e-11 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 2e-10 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 3e-06 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 0.001 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 0.001 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 0.001 |
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 94.0 bits (233), Expect = 8e-23
Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 35/195 (17%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG-LDSVAITETGSGKTLAFLLPML 180
+ + L+ IL E P IQ L ++ + VA TGSGKT +F +P++
Sbjct: 5 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 64
Query: 181 RHIWEQPPVVPGDDSPVGLVMAPT--------------------GELVRQQVRR------ 214
+ E + +P + G+ + Q++
Sbjct: 65 ELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANI 124
Query: 215 -----GRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269
GR++D + + + NL V Y +LDEAD M +MGF + +I+ D++ +L
Sbjct: 125 VVGTPGRILDHINRGTL---NLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILL 181
Query: 270 FSPTFPPRVEILARK 284
FS T P + LA+K
Sbjct: 182 FSATMPREILNLAKK 196
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 90.6 bits (224), Expect = 1e-21
Identities = 49/203 (24%), Positives = 71/203 (34%), Gaps = 41/203 (20%)
Query: 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFL 176
K + + L +L E P AIQ A II G D +A ++G+GKT F
Sbjct: 6 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 65
Query: 177 LPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL---------------------VRQQVRRG 215
+ L+ I +P L++APT EL
Sbjct: 66 IAALQRIDTSVK------APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFV 119
Query: 216 RMIDLLCKNGVKIT--------------NLTRVTYLVLDEADRMFDMGFEPQITRIVQNI 261
+ L + + ++ +LDEAD M GF+ QI +I +
Sbjct: 120 EDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL 179
Query: 262 RPDRQAVLFSPTFPPRVEILARK 284
P Q VL S T P V + K
Sbjct: 180 PPTTQVVLLSATMPNDVLEVTTK 202
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.9 bits (209), Expect = 2e-19
Identities = 50/205 (24%), Positives = 76/205 (37%), Gaps = 43/205 (20%)
Query: 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFL 176
+ + ++ L+ +L E P AIQ A I G D +A ++G+GKT F
Sbjct: 8 NEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFA 67
Query: 177 LPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ----------------------QVRR 214
+ +L+ I + LV+APT EL +Q R
Sbjct: 68 ISILQQIELDLK------ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVR 121
Query: 215 GRMIDLLCKNGV---------------KITNLTRVTYLVLDEADRMFDMGFEPQITRIVQ 259
+ L + + + + VLDEAD M GF+ QI I Q
Sbjct: 122 AEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 181
Query: 260 NIRPDRQAVLFSPTFPPRVEILARK 284
+ + Q VL S T P V + +K
Sbjct: 182 KLNSNTQVVLLSATMPSDVLEVTKK 206
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 83.8 bits (206), Expect = 6e-19
Identities = 29/209 (13%), Positives = 56/209 (26%), Gaps = 41/209 (19%)
Query: 116 APKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAF 175
A + + + L + +E F K E P AIQ + I+ A TG GKT
Sbjct: 17 AAASLCLFPEDFLLKEFVEFFRKCVGE-PRAIQKMWAKRILRKESFAATAPTGVGKTSFG 75
Query: 176 LLPMLRHIWEQPPVV--------------------PGDDSPVGLVMAPTGELVRQQVRRG 215
L L + ++ + ++ +
Sbjct: 76 LAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKEN 135
Query: 216 RMIDLLCKNGVKITN---------LTRVTYLVLDEADRMFD-----------MGFEPQIT 255
M +L V T L ++ +D+ D + +GF +
Sbjct: 136 FMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLK 195
Query: 256 RIVQNIRPDRQAVLFSPTFPPRVEILARK 284
++ + T + +
Sbjct: 196 TKSWVGEARGCLMVSTATAKKGKKAELFR 224
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 82.3 bits (202), Expect = 2e-18
Identities = 59/214 (27%), Positives = 88/214 (41%), Gaps = 47/214 (21%)
Query: 116 APKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAF 175
A I+ + + L I +++ P IQ A I+ D +A +TGSGKT AF
Sbjct: 16 ATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAF 75
Query: 176 LLPMLRHIWEQPPVVPGD---DSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKIT--- 229
L+P++ H+ Q P L++APT EL Q + + ++
Sbjct: 76 LIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS--LNTPLRSCVVY 133
Query: 230 -----------------------------------NLTRVTYLVLDEADRMFDMGFEPQI 254
+L Y+VLDEADRM DMGFEPQI
Sbjct: 134 GGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQI 193
Query: 255 TRIVQNIR----PDRQAVLFSPTFPPRVEILARK 284
+I++ +RQ ++FS TFP ++ LA
Sbjct: 194 RKIIEESNMPSGINRQTLMFSATFPKEIQKLAAD 227
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.5 bits (195), Expect = 1e-17
Identities = 44/198 (22%), Positives = 67/198 (33%), Gaps = 30/198 (15%)
Query: 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFL 176
T+ GL +L E P AIQ A II G D +A +++G+GKT F
Sbjct: 13 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 72
Query: 177 LPML-RHIWEQPPVVPGDDSPVGLVMAPTGELVRQ-------------QVRRGRMIDLLC 222
+ +L + +P + + +
Sbjct: 73 ISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL 132
Query: 223 KNGVKITNLT----------------RVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQ 266
G + T + LVLDEAD M + GF+ QI + + + P Q
Sbjct: 133 DYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 192
Query: 267 AVLFSPTFPPRVEILARK 284
VL S T P + + K
Sbjct: 193 VVLISATLPHEILEMTNK 210
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.1 bits (165), Expect = 8e-14
Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 30/193 (15%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
T+ L ++L + E P IQ A + I+G D +A + G+GKT AF++P L
Sbjct: 2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 61
Query: 182 HIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKIT------------ 229
+ + + +A V + + + I + G
Sbjct: 62 KVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVH 121
Query: 230 ------------------NLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271
+L+ + ++DEAD+M F+ I +I+ + P Q++LFS
Sbjct: 122 ILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFS 181
Query: 272 PTFPPRVEILARK 284
TFP V+ K
Sbjct: 182 ATFPLTVKEFMVK 194
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 70.0 bits (170), Expect = 8e-14
Identities = 16/163 (9%), Positives = 44/163 (26%), Gaps = 38/163 (23%)
Query: 154 LIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR 213
+ ++ G+GKT +L ++R ++ L++APT + +
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRT--------LILAPTRVVAAEMEE 56
Query: 214 R---------------------------GRMIDLLCKNGVKITNLTRVTYLVLDEADRMF 246
+ + +++ N +++DEA
Sbjct: 57 ALRGLPIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPN---YNLIIMDEAHFTD 113
Query: 247 DMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCN 289
+ + + + + T P + +
Sbjct: 114 PASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIM 156
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.0 bits (165), Expect = 9e-14
Identities = 36/196 (18%), Positives = 68/196 (34%), Gaps = 33/196 (16%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
+R L ++L E+P +Q I G+D + ++G GKT F+L L+
Sbjct: 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 61
Query: 182 HIWEQPPVVPGDDSPVGLVMA----------------PTGELVRQQVRRGRMIDLLCKNG 225
+ V +A + + + ++L KN
Sbjct: 62 QLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNC 121
Query: 226 V----------------KITNLTRVTYLVLDEADRMFD-MGFEPQITRIVQNIRPDRQAV 268
K NL + + +LDE D+M + + + I + ++Q +
Sbjct: 122 PHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVM 181
Query: 269 LFSPTFPPRVEILARK 284
+FS T + + RK
Sbjct: 182 MFSATLSKEIRPVCRK 197
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.9 bits (162), Expect = 2e-13
Identities = 40/201 (19%), Positives = 73/201 (36%), Gaps = 43/201 (21%)
Query: 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPML 180
+ L ++L ++ E P IQ + + +SG D +A + G+GK+ A+L+P+L
Sbjct: 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 62
Query: 181 RHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNL--------- 231
+ + + +V+ PT EL Q + + +
Sbjct: 63 ERLDLKKD------NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI 116
Query: 232 ----------------------------TRVTYLVLDEADRMFDMGFEPQITRIVQNIRP 263
V +VLDEAD++ F + I+ +
Sbjct: 117 MRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 176
Query: 264 DRQAVLFSPTFPPRVEILARK 284
+RQ +L+S TFP V+
Sbjct: 177 NRQILLYSATFPLSVQKFMNS 197
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 60.5 bits (145), Expect = 3e-11
Identities = 41/197 (20%), Positives = 70/197 (35%), Gaps = 34/197 (17%)
Query: 122 TWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLR 181
+ + I+E L P IQ + G V ++TG+GKT A+LLP++
Sbjct: 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIME 61
Query: 182 HIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKI------------- 228
I + V + +A ++ + D + I
Sbjct: 62 KIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLN 121
Query: 229 ---------------------TNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQA 267
++ LV+DEAD M DMGF + +I + D Q
Sbjct: 122 VQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQM 181
Query: 268 VLFSPTFPPRVEILARK 284
++FS T P +++ +K
Sbjct: 182 LVFSATIPEKLKPFLKK 198
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 60.0 bits (144), Expect = 4e-11
Identities = 27/192 (14%), Positives = 58/192 (30%), Gaps = 45/192 (23%)
Query: 127 GLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQ 186
+++ + + E QA A + SG + + T +GKTL + M+R +
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG 68
Query: 187 PPVVPGDDSPVGLVMAPTGELVRQQVRRGRMIDLLCKNGV-------------------- 226
+ + P L ++ + + +
Sbjct: 69 GKSLY---------VVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIV 119
Query: 227 ------------KITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIR---PDRQAVLFS 271
+ + + V+ LV+DE + + +V +R + + S
Sbjct: 120 TTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLS 179
Query: 272 PTFPPRVEILAR 283
T P V +A
Sbjct: 180 ATAPN-VTEIAE 190
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 58.1 bits (139), Expect = 2e-10
Identities = 25/188 (13%), Positives = 53/188 (28%), Gaps = 31/188 (16%)
Query: 127 GLTTKILETFSKL-NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWE 185
L + + + ++ Q ++SG D + + TG GK+L + +P L
Sbjct: 8 NLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGL 67
Query: 186 QPPVVP------------------GDDSPVGLVMAPTGELVRQQVRRGRMI------DLL 221
V P E++ + L+
Sbjct: 68 TVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLM 127
Query: 222 CKNGVKITNLTRVTYLVLDEADRMFDMGFEPQ----ITRIVQNIRPDRQAVLFSPTFPPR 277
N ++ L +DEA + G + + ++ P + + T
Sbjct: 128 LDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDT 187
Query: 278 V--EILAR 283
+I+
Sbjct: 188 TRQDIVRL 195
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 45.5 bits (106), Expect = 3e-06
Identities = 19/151 (12%), Positives = 41/151 (27%), Gaps = 27/151 (17%)
Query: 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVV-------------------PGDDSPVGLV 200
+ + + TG GKTL ++ + + V + P +V
Sbjct: 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIV 84
Query: 201 MAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYL--------VLDEADRMFDMGFEP 252
+ ++ + ++ I N + V DEA R
Sbjct: 85 ALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYV 144
Query: 253 QITRIVQNIRPDRQAVLFSPTFPPRVEILAR 283
I R + + + + + E +
Sbjct: 145 FIAREYKRQAKNPLVIGLTASPGSTPEKIME 175
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 37.9 bits (87), Expect = 0.001
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCC 326
+ ++ + ++ GLD E+ LV DA +
Sbjct: 78 RLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 120
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 38.7 bits (89), Expect = 0.001
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 284 KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHC 325
N+ +A SV GLD E++LV+ ++ +
Sbjct: 216 ARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRR 257
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 38.7 bits (90), Expect = 0.001
Identities = 5/50 (10%), Positives = 12/50 (24%), Gaps = 3/50 (6%)
Query: 277 RVEILARKTNVCNLSIANSVRARGLDEKELEL---VINFDAPNDYEDYVH 323
++ T + I + + L+ + P D
Sbjct: 86 TDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQ 135
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 494 | |||
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 100.0 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 100.0 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 100.0 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 100.0 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 100.0 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 100.0 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 100.0 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 100.0 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.93 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.9 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.9 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.9 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.76 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.74 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.73 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.72 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.64 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.64 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.64 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.6 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.58 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.51 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.44 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.43 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.4 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.36 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.35 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.35 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.34 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.24 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.17 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.12 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 98.96 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 98.79 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.5 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 98.45 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.05 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 97.79 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 97.75 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 97.73 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 97.29 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 97.16 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 96.73 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 96.64 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 96.45 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 96.17 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.92 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.76 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.58 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 95.45 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.42 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 95.4 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 95.3 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.13 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.12 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 94.99 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.63 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.25 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.89 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.87 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.86 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.71 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 93.65 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.61 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.49 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.34 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.06 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 92.76 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 92.3 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 92.18 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.16 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.05 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 91.99 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 91.66 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.29 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 91.27 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 90.94 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 90.87 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 90.62 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 89.43 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 88.98 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 88.91 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 88.69 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 88.66 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 87.42 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 87.37 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.51 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 85.87 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 85.17 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 84.95 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 83.75 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 83.47 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 82.37 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 82.1 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 81.92 |
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-39 Score=310.91 Aligned_cols=171 Identities=30% Similarity=0.431 Sum_probs=153.4
Q ss_pred eccCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCC
Q 042373 111 IREKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVV 190 (494)
Q Consensus 111 v~g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~ 190 (494)
.....-.....+|+++||++.++++|+++||..|||||+++||.++.|+|++++|+||||||+||++|+++++....
T Consensus 7 ~~~~~~~~~~~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~~~--- 83 (222)
T d2j0sa1 7 FETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV--- 83 (222)
T ss_dssp CCCCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS---
T ss_pred cccCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhcccccccccccc---
Confidence 33444456677999999999999999999999999999999999999999999999999999999999999885432
Q ss_pred CCCCCCeEEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecc
Q 042373 191 PGDDSPVGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNL 231 (494)
Q Consensus 191 ~~~~~p~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l 231 (494)
.++++||++||||||.|+ +|||||.+++..+ ..++
T Consensus 84 ---~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~---~~~~ 157 (222)
T d2j0sa1 84 ---RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR---SLRT 157 (222)
T ss_dssp ---CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT---SSCC
T ss_pred ---cCceeEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhccccc---cccc
Confidence 378999999999999998 8999999998874 3578
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCccc
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNL 290 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~I 290 (494)
+++++||+||||+|+++||.+++..|++.+++.+|+++||||+|+++..++++.-..++
T Consensus 158 ~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l~~~~l~~Pv 216 (222)
T d2j0sa1 158 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPI 216 (222)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCE
T ss_pred ccceeeeecchhHhhhcCcHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCE
Confidence 99999999999999999999999999999999999999999999999988876433333
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.8e-39 Score=303.88 Aligned_cols=161 Identities=29% Similarity=0.469 Sum_probs=148.6
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
.++|++++|++.|+++|.++||..|||+|++|||.+++|+|++++||||||||+||++|+++++.... .++.+|
T Consensus 2 ~~~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~~~------~~~~~l 75 (206)
T d1veca_ 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK------DNIQAM 75 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS------CSCCEE
T ss_pred CCChhccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhcccccc------cCcceE
Confidence 37899999999999999999999999999999999999999999999999999999999999875432 388999
Q ss_pred EEccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 200 VMAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 200 Il~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
|++||||||.|+ +||||+.+++..+ ..+++++++||+
T Consensus 76 il~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~---~~~~~~l~~lVl 152 (206)
T d1veca_ 76 VIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG---VAKVDHVQMIVL 152 (206)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT---CSCCTTCCEEEE
T ss_pred EEeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccch---hccccccceEEE
Confidence 999999999998 7999999999874 357899999999
Q ss_pred cccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCcc
Q 042373 240 DEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCN 289 (494)
Q Consensus 240 DEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ 289 (494)
||||+|+++||.+++..|++.+++++|+++||||+|+++..+++..-+.+
T Consensus 153 DEaD~ll~~~f~~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l~~~~l~~P 202 (206)
T d1veca_ 153 DEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKP 202 (206)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSC
T ss_pred eccccccccchHHHHHHHHHhCCCCCEEEEEEecCCHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999998744333
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.6e-39 Score=306.35 Aligned_cols=170 Identities=31% Similarity=0.440 Sum_probs=155.7
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCC
Q 042373 114 KCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGD 193 (494)
Q Consensus 114 ~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~ 193 (494)
.+.|.|+.+|++++|++.++++|.++||..|||+|++|||.++.|+|++++|+||||||+||++|+++++... .
T Consensus 5 ~~~~e~i~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~~------~ 78 (218)
T d2g9na1 5 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD------L 78 (218)
T ss_dssp CCCCCCCCCGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCTT------C
T ss_pred CCCCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheeccc------c
Confidence 4578999999999999999999999999999999999999999999999999999999999999999998543 2
Q ss_pred CCCeEEEEccchhHHHhh----------------------------------------hhhhHHHHHHHhcCcceecccc
Q 042373 194 DSPVGLVMAPTGELVRQQ----------------------------------------VRRGRMIDLLCKNGVKITNLTR 233 (494)
Q Consensus 194 ~~p~aLIl~PTreLa~Qi----------------------------------------~TPgrl~dll~~~~~~~~~l~~ 233 (494)
.++++||++||||||.|+ +||+|+.+++.++ ...+++
T Consensus 79 ~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~---~~~~~~ 155 (218)
T d2g9na1 79 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR---YLSPKY 155 (218)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTT---SSCSTT
T ss_pred cCccEEEEcccchhhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcC---Cccccc
Confidence 389999999999999998 8999999999864 357899
Q ss_pred eEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCcccee
Q 042373 234 VTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSI 292 (494)
Q Consensus 234 l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILV 292 (494)
+++||+||||+|++.+|.+++..|++.++.++|+++||||+|+.+..+++..-+-++.|
T Consensus 156 l~~lVlDEaD~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~~~~~l~~pv~i 214 (218)
T d2g9na1 156 IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRI 214 (218)
T ss_dssp CCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred ceEEEeeecchhhcCchHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHCCCCEEE
Confidence 99999999999999999999999999999999999999999999999998744444443
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-38 Score=303.94 Aligned_cols=171 Identities=31% Similarity=0.414 Sum_probs=158.2
Q ss_pred cCCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCC
Q 042373 113 EKCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPG 192 (494)
Q Consensus 113 g~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~ 192 (494)
|.+.|.++.+|++++|++.++++|+++||++|||+|+++||.++.|+|++++||||||||++|++|+++++...
T Consensus 2 ~~~~~~~~~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~~------ 75 (212)
T d1qdea_ 2 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS------ 75 (212)
T ss_dssp CBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT------
T ss_pred CCCCcccccChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhcc------
Confidence 56889999999999999999999999999999999999999999999999999999999999999999998433
Q ss_pred CCCCeEEEEccchhHHHhh--------------------------------------hhhhHHHHHHHhcCcceecccce
Q 042373 193 DDSPVGLVMAPTGELVRQQ--------------------------------------VRRGRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 193 ~~~p~aLIl~PTreLa~Qi--------------------------------------~TPgrl~dll~~~~~~~~~l~~l 234 (494)
..+|++||++||++|+.|+ +||+++..++..+. .+++++
T Consensus 76 ~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~~~~~---~~l~~l 152 (212)
T d1qdea_ 76 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR---FRTDKI 152 (212)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTS---SCCTTC
T ss_pred CCCcceEEEcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHhcCCcEEEECCCccccccccCc---eecCcc
Confidence 2389999999999999998 79999999988753 479999
Q ss_pred EEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCcccee
Q 042373 235 TYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSI 292 (494)
Q Consensus 235 ~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILV 292 (494)
+++|+||||+|++++|.+++..|++.+++.+|+++||||+|+.+..++++..+-++.|
T Consensus 153 ~~lVlDEad~lld~~f~~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l~~~~l~~Pv~i 210 (212)
T d1qdea_ 153 KMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRI 210 (212)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEE
T ss_pred eEEeehhhhhhcccchHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHHCCCCEEE
Confidence 9999999999999999999999999999999999999999999999998855555554
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.8e-38 Score=297.16 Aligned_cols=155 Identities=26% Similarity=0.413 Sum_probs=144.4
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
++|++|+|++.++++|.++||+.|||+|+++||.+++|+|++++||||||||+||++|+++++... ..+++++|
T Consensus 1 s~F~dl~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~~------~~~~~~li 74 (207)
T d1t6na_ 1 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV------TGQVSVLV 74 (207)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC------TTCCCEEE
T ss_pred CCccccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeeccc------CCCceEEE
Confidence 479999999999999999999999999999999999999999999999999999999999987443 23789999
Q ss_pred EccchhHHHhh-----------------------------------------hhhhHHHHHHHhcCcceecccceEEEEE
Q 042373 201 MAPTGELVRQQ-----------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVL 239 (494)
Q Consensus 201 l~PTreLa~Qi-----------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVl 239 (494)
++||||||.|+ +||+|+.+++..+ .+++++++++|+
T Consensus 75 l~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~---~~~l~~l~~lVl 151 (207)
T d1t6na_ 75 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK---SLNLKHIKHFIL 151 (207)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT---SSCCTTCCEEEE
T ss_pred EeccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCC---ceeccccceeeh
Confidence 99999999998 7999999999874 357999999999
Q ss_pred cccchhcc-cCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 240 DEADRMFD-MGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 240 DEaD~ml~-~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
||||+|++ +||.+.+..|++.+++++|+++||||+++.++.+++.
T Consensus 152 DEaD~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~ 197 (207)
T d1t6na_ 152 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK 197 (207)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHT
T ss_pred hhhhhhhhcCCcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHHHH
Confidence 99999998 5899999999999999999999999999999999876
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=100.00 E-value=1.5e-36 Score=294.29 Aligned_cols=176 Identities=36% Similarity=0.533 Sum_probs=154.2
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCC---C
Q 042373 114 KCAPKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPV---V 190 (494)
Q Consensus 114 ~~~P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~---~ 190 (494)
.+.|.++.+|++++|++.|+++|.++||..|||+|+++||.++.|+|++++||||||||+||++|+++++...... .
T Consensus 14 ~~~~~~~~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~ 93 (238)
T d1wrba1 14 YSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRY 93 (238)
T ss_dssp SSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC-----
T ss_pred CCCCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhcccccccc
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999765321 1
Q ss_pred CCCCCCeEEEEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecc
Q 042373 191 PGDDSPVGLVMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNL 231 (494)
Q Consensus 191 ~~~~~p~aLIl~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l 231 (494)
....+|++|||+||+|||.|+ +||++|.+++..+ ...|
T Consensus 94 ~~~~~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~---~~~l 170 (238)
T d1wrba1 94 SKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN---KISL 170 (238)
T ss_dssp -CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT---SBCC
T ss_pred cCCCCceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccC---ceec
Confidence 223489999999999999998 8999999999875 3479
Q ss_pred cceEEEEEcccchhcccCChhHHHHHHHhhc----CCCcEEEecCCCChHHHHHHHhcCCcccee
Q 042373 232 TRVTYLVLDEADRMFDMGFEPQITRIVQNIR----PDRQAVLFSPTFPPRVEILARKTNVCNLSI 292 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~----~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILV 292 (494)
++++++|+||||+|++.+|.+++..|++.++ .++|+++||||++..++.+++..-+..+.|
T Consensus 171 ~~v~~lViDEaD~ll~~~f~~~i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l~~~~~~~p~~i 235 (238)
T d1wrba1 171 EFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFM 235 (238)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEE
T ss_pred cccceeeeehhhhhhhhccHHHHHHHHHHhcCCCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEE
Confidence 9999999999999999999999999999764 267999999999999999998743334433
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3e-35 Score=279.18 Aligned_cols=155 Identities=32% Similarity=0.553 Sum_probs=144.4
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCC-CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGL-DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~gr-dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
.++|++++|++.|+++|.++||.+|||+|+++||.+++|+ |++++||||||||++|++|++++.... .+|++
T Consensus 3 ~msf~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~~-------~~~~~ 75 (208)
T d1hv8a1 3 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-------NGIEA 75 (208)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-------SSCCE
T ss_pred ccCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeecccccccccc-------cCcce
Confidence 3689999999999999999999999999999999999985 999999999999999999999876443 28999
Q ss_pred EEEccchhHHHhh--------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEc
Q 042373 199 LVMAPTGELVRQQ--------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLD 240 (494)
Q Consensus 199 LIl~PTreLa~Qi--------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlD 240 (494)
||++||++||.|+ +||++|.+++.++. ++++++++||+|
T Consensus 76 lil~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~IlV~TP~~l~~~l~~~~---~~~~~l~~lViD 152 (208)
T d1hv8a1 76 IILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGT---LNLKNVKYFILD 152 (208)
T ss_dssp EEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTC---SCTTSCCEEEEE
T ss_pred EEEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcCCCCEEEEChHHHHHHHHcCC---CCcccCcEEEEE
Confidence 9999999999998 79999999998753 579999999999
Q ss_pred ccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 241 EADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 241 EaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
|||+|++.+|.+++..|++.+++++|+++||||+|+++..++++
T Consensus 153 Ead~l~~~~~~~~i~~I~~~~~~~~Q~i~~SAT~~~~v~~~~~~ 196 (208)
T d1hv8a1 153 EADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKK 196 (208)
T ss_dssp THHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHH
T ss_pred ChHHhhcCCChHHHHHHHHhCCCCCeEEEEEccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.2e-35 Score=278.31 Aligned_cols=163 Identities=31% Similarity=0.493 Sum_probs=149.1
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
.+|++|+|++.|+++|+++||..|||+|+++||.++.|+|+++.||||||||++|++|+++++..+. .++++++
T Consensus 1 ~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~~~------~~~~~~~ 74 (206)
T d1s2ma1 1 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL------NKIQALI 74 (206)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS------CSCCEEE
T ss_pred CChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhcccccccccccc------cccccee
Confidence 4799999999999999999999999999999999999999999999999999999999999875443 3788999
Q ss_pred EccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcc
Q 042373 201 MAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDE 241 (494)
Q Consensus 201 l~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDE 241 (494)
++|+++++.|. +||++|.+++..+ .++|++++++|+||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~---~~~l~~l~~lV~DE 151 (206)
T d1s2ma1 75 MVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK---VADLSDCSLFIMDE 151 (206)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT---CSCCTTCCEEEEES
T ss_pred eccchhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCcccccccccc---eeecccceEEEeec
Confidence 99999999887 8999999999874 35799999999999
Q ss_pred cchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCcccee
Q 042373 242 ADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNLSI 292 (494)
Q Consensus 242 aD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~ILV 292 (494)
||+|++.+|.+++..|++.+++.+|+++||||+|+.+..++++.-..++.|
T Consensus 152 aD~l~~~~f~~~v~~I~~~l~~~~Q~il~SATl~~~v~~~~~~~l~~P~~I 202 (206)
T d1s2ma1 152 ADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEI 202 (206)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hhhhhhhhhHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEE
Confidence 999999999999999999999999999999999999999998744444443
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=4.2e-34 Score=270.19 Aligned_cols=157 Identities=29% Similarity=0.456 Sum_probs=144.6
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
++|+++||++.|+++|+++||.+|||+|++|||.+++|+|++++||||||||+||++|+++++.... ..+..++
T Consensus 1 t~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~~~------~~~~~~~ 74 (209)
T d1q0ua_ 1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER------AEVQAVI 74 (209)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS------CSCCEEE
T ss_pred CccccCCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeecccccccc------ccccccc
Confidence 5799999999999999999999999999999999999999999999999999999999999875432 2678999
Q ss_pred EccchhHHHhh-------------------------------------------hhhhHHHHHHHhcCcceecccceEEE
Q 042373 201 MAPTGELVRQQ-------------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYL 237 (494)
Q Consensus 201 l~PTreLa~Qi-------------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~l 237 (494)
++|+++++.+. +||+++.+++.+.. ..+++++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~---~~~~~l~~l 151 (209)
T d1q0ua_ 75 TAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA---LDVHTAHIL 151 (209)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC---CCGGGCCEE
T ss_pred cccccchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhc---cccccceEE
Confidence 99999998876 79999999988743 468999999
Q ss_pred EEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcC
Q 042373 238 VLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARKTN 286 (494)
Q Consensus 238 VlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g 286 (494)
|+||||+|++++|.+++..|+..+++++|+++||||+|+++..++++--
T Consensus 152 ViDEad~ll~~~f~~~v~~I~~~~~~~~Q~il~SATl~~~v~~l~~~~l 200 (209)
T d1q0ua_ 152 VVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYM 200 (209)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHC
T ss_pred EEeecccccccccHHHHHHHHHHCCCCCEEEEEEccCCHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999987633
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.93 E-value=1.1e-26 Score=228.97 Aligned_cols=170 Identities=15% Similarity=0.155 Sum_probs=126.8
Q ss_pred HHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----------------------
Q 042373 155 IISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------------------- 211 (494)
Q Consensus 155 il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------------------- 211 (494)
+..|+++|+.||||||||++|++|++...... ++++||++|||+||.|+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~--------~~~~lvi~Ptr~La~q~~~~l~~~~~~~~~~~~~~~~~~~ 77 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR--------GLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIRAEHTGR 77 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHH--------TCCEEEEESSHHHHHHHHHHTTTSCCBCCC--------CC
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHhc--------CCEEEEEccHHHHHHHHHHHHhcCCcceeeeEEeecccCc
Confidence 45789999999999999999999999877653 67899999999999998
Q ss_pred -----hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhh--cCCCcEEEecCCCChHHHHHHHh
Q 042373 212 -----VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNI--RPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 212 -----~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l--~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
+|++.|..++... ..+.++++||+||||++..+++. +..++..+ +...|++++|||++.....+...
T Consensus 78 ~~i~~~t~~~l~~~~~~~----~~~~~~~~vViDE~H~~~~~~~~--~~~~l~~~~~~~~~~~v~~SAT~~~~~~~~~~~ 151 (305)
T d2bmfa2 78 EIVDLMCHATFTMRLLSP----IRVPNYNLIIMDEAHFTDPASIA--ARGYISTRVEMGEAAGIFMTATPPGSRDPFPQS 151 (305)
T ss_dssp CSEEEEEHHHHHHHHTSS----SCCCCCSEEEEESTTCCSHHHHH--HHHHHHHHHHHTSCEEEEECSSCTTCCCSSCCC
T ss_pred cccccCCcHHHHHHHhcC----ccccceeEEEeeeeeecchhhHH--HHHHHHHhhccccceEEEeecCCCcceeeeccc
Confidence 6778776665532 35788999999999999876532 22223222 46789999999976432211110
Q ss_pred ----------------------------------------------------------------------cCCccceeec
Q 042373 285 ----------------------------------------------------------------------TNVCNLSIAN 294 (494)
Q Consensus 285 ----------------------------------------------------------------------~g~~~ILVaT 294 (494)
.+..+++|||
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lvaT 231 (305)
T d2bmfa2 152 NAPIMDEEREIPERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDFVVTT 231 (305)
T ss_dssp SSCEEEEECCCCCSCCSSCCHHHHSSCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHGGGGGTSCCSEEEEC
T ss_pred CCcceEEEEeccHHHHHHHHHHHHhhCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHHHhhhhccchhhhhhh
Confidence 6888999999
Q ss_pred cccccCCCCCCceEE----------EecCC----------CCCHhHHHhhhccCCCcc---eEEEEec
Q 042373 295 SVRARGLDEKELELV----------INFDA----------PNDYEDYVHHCCQSWLKS---CAFRFIS 339 (494)
Q Consensus 295 dv~~rGlDi~~v~~V----------Inyd~----------P~s~~~yvhR~GRaGr~G---~aitfv~ 339 (494)
+++++|+|++ +++| ++||. |.|..+|+||+||+||.| .+..++.
T Consensus 232 ~~~~~G~~~~-~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~~~~~~ 298 (305)
T d2bmfa2 232 DISEMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYM 298 (305)
T ss_dssp GGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCEEEEEC
T ss_pred HHHHhcCCCC-ccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCceEEEEEC
Confidence 9999999994 3444 45554 457899999999988844 3444444
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.2e-24 Score=204.00 Aligned_cols=148 Identities=18% Similarity=0.243 Sum_probs=116.0
Q ss_pred CCcccCCCCHHHHHHHHhC-CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 121 KTWRQTGLTTKILETFSKL-NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~-g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
...+.++|++.+.+.|++. ||+.++|+|.++|+.+++|+|+++++|||||||++|.+|++.. ...++
T Consensus 2 ~~~e~~~l~~~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~~------------~~~~~ 69 (206)
T d1oywa2 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLTV 69 (206)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEEE
T ss_pred CchhhCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhhhc------------cCceE
Confidence 4568899999999999886 9999999999999999999999999999999999999999853 55899
Q ss_pred EEccchhHHHhh---------------------------------------hhhhHHHHHHHhcCcceecccceEEEEEc
Q 042373 200 VMAPTGELVRQQ---------------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLD 240 (494)
Q Consensus 200 Il~PTreLa~Qi---------------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlD 240 (494)
+++|+++|+.|+ +||.++...... ......++.++|+|
T Consensus 70 ~v~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~---~~~~~~~v~~lviD 146 (206)
T d1oywa2 70 VVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL---EHLAHWNPVLLAVD 146 (206)
T ss_dssp EECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH---HHHTTSCEEEEEES
T ss_pred EeccchhhhhhHHHHHHhhcccccccccccccccchhHHHHHhcCCceEEEEechhhhchhhc---ccchhheeeeeeee
Confidence 999999999998 234433221111 12346689999999
Q ss_pred ccchhcccCCh--hH---HHHHHHhhcCCCcEEEecCCCChHHHH-HHHh
Q 042373 241 EADRMFDMGFE--PQ---ITRIVQNIRPDRQAVLFSPTFPPRVEI-LARK 284 (494)
Q Consensus 241 EaD~ml~~gf~--~~---i~~Il~~l~~~~Q~ilfSAT~~~~v~~-l~~~ 284 (494)
|||++.++++. .. +..+...+ ++.|+++||||+++.+.+ +++.
T Consensus 147 EaH~~~~~~~~~~~~~~~~~~l~~~~-~~~~ii~lSATl~~~v~~di~~~ 195 (206)
T d1oywa2 147 EAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRL 195 (206)
T ss_dssp SGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHH
T ss_pred eeeeeeccccchHHHHHHHHHHHHhC-CCCceEEEEeCCCHHHHHHHHHH
Confidence 99999988743 22 22333333 579999999999998754 4443
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.90 E-value=4e-25 Score=212.11 Aligned_cols=143 Identities=17% Similarity=0.103 Sum_probs=107.4
Q ss_pred CCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEE
Q 042373 120 IKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGL 199 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aL 199 (494)
+..|.+..+.+.+. .+.+.+|.+|+++|+.+|+.++.|+|++++||||||||++|+++++..... +.++|
T Consensus 21 ~~~~~~~~~~~~~~-~~~~~~~~~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~~---------~~rvl 90 (237)
T d1gkub1 21 LCLFPEDFLLKEFV-EFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALK---------GKRCY 90 (237)
T ss_dssp CSCCTTHHHHHHHH-HHHHTTTCSCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTT---------SCCEE
T ss_pred cccCccchhHHHHH-HHHHhccCCCCHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHHHh---------cCeEE
Confidence 34455544455544 455668999999999999999999999999999999999999999877643 56899
Q ss_pred EEccchhHHHhh---------------------------------------------hhhhHHHHHHHhcCcceecccce
Q 042373 200 VMAPTGELVRQQ---------------------------------------------VRRGRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 200 Il~PTreLa~Qi---------------------------------------------~TPgrl~dll~~~~~~~~~l~~l 234 (494)
||+||++|+.|+ +||++|.+. ...++++
T Consensus 91 iv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~-------~~~~~~~ 163 (237)
T d1gkub1 91 VIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKH-------YRELGHF 163 (237)
T ss_dssp EEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHC-------STTSCCC
T ss_pred EEeccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHHh-------hhhcCCC
Confidence 999999999997 456554332 2346789
Q ss_pred EEEEEcccchhcccCC-----------hhHHHHHHHhhcCCCcEEEecCCCChHHH
Q 042373 235 TYLVLDEADRMFDMGF-----------EPQITRIVQNIRPDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 235 ~~lVlDEaD~ml~~gf-----------~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~ 279 (494)
++|||||||.|++.+. ...+..+....+...|++++|||+++.+.
T Consensus 164 ~~vVvDE~d~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~ 219 (237)
T d1gkub1 164 DFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKK 219 (237)
T ss_dssp SEEEESCHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTT
T ss_pred CEEEEEChhhhhhcccchhHHHHhcCChHHHHHHHhhCCCCCeEEEEeCCCCcccH
Confidence 9999999999987542 22222222223457899999999987543
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.90 E-value=4.6e-24 Score=199.78 Aligned_cols=144 Identities=19% Similarity=0.215 Sum_probs=118.8
Q ss_pred CCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH
Q 042373 128 LTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL 207 (494)
Q Consensus 128 L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL 207 (494)
+++.++..|++.||.+|+|+|.++++.+++|+|+++++|||||||++++++++..+.. ++++||++||++|
T Consensus 10 ~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~~---------~~~vl~l~P~~~L 80 (202)
T d2p6ra3 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGKSLYVVPLRAL 80 (202)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCCEEEEESSHHH
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHhhc---------cCcceeecccHHH
Confidence 6788999999999999999999999999999999999999999999999999988764 5579999999999
Q ss_pred HHhh-----------------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChh
Q 042373 208 VRQQ-----------------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEP 252 (494)
Q Consensus 208 a~Qi-----------------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~ 252 (494)
+.|+ +||..+..++.... ..+.++++||+||+|++.+.++..
T Consensus 81 ~~q~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~---~~~~~~~~ii~DE~h~~~~~~r~~ 157 (202)
T d2p6ra3 81 AGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRA---SWIKAVSCLVVDEIHLLDSEKRGA 157 (202)
T ss_dssp HHHHHHHHTTTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTC---SGGGGCCEEEETTGGGGGCTTTHH
T ss_pred HHHHHHHHHHHhhccccceeeccCcccccccccccceeeeccHHHHHHHhccc---hhhhhhhhccccHHHHhcccccch
Confidence 9997 67777777666532 468899999999999999887766
Q ss_pred HHHHHHH---hhcCCCcEEEecCCCChHHHHHHHh
Q 042373 253 QITRIVQ---NIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 253 ~i~~Il~---~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
.+..++. ..++..|++++|||+++ ...+++.
T Consensus 158 ~~~~~l~~i~~~~~~~~~l~lSATl~n-~~~~~~~ 191 (202)
T d2p6ra3 158 TLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEW 191 (202)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcEEEEcCCCCc-HHHHHHH
Confidence 6555544 44678899999999976 4555543
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.76 E-value=1.3e-18 Score=160.92 Aligned_cols=128 Identities=21% Similarity=0.151 Sum_probs=101.7
Q ss_pred CCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh----------
Q 042373 142 ENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---------- 211 (494)
Q Consensus 142 ~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---------- 211 (494)
-+|.++|..++..+. ++|+|+++|||||||+++++++...+... +.++||++|+++|+.|+
T Consensus 8 ~~pr~~Q~~~~~~~~-~~n~lv~~pTGsGKT~i~~~~~~~~~~~~--------~~~il~i~P~~~L~~q~~~~~~~~~~~ 78 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTKY--------GGKVLMLAPTKPLVLQHAESFRRLFNL 78 (200)
T ss_dssp HCCCHHHHHHHHHGG-GSCEEEECCTTSCHHHHHHHHHHHHHHHS--------CSCEEEECSSHHHHHHHHHHHHHHBCS
T ss_pred CCCCHHHHHHHHHHh-cCCeEEEeCCCCcHHHHHHHHHHHHHHhc--------CCcEEEEcCchHHHHHHHHHHHHhhcc
Confidence 379999999998875 67899999999999999999888776543 45799999999999997
Q ss_pred ----------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcC
Q 042373 212 ----------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRP 263 (494)
Q Consensus 212 ----------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~ 263 (494)
+||.++...+... ...++++++||+||||++........+...+.....
T Consensus 79 ~~~~v~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~---~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~ 155 (200)
T d1wp9a1 79 PPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAG---RISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAK 155 (200)
T ss_dssp CGGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTT---SCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCS
T ss_pred cccceeeeecccchhHHHHhhhcccccccccchhHHHHhhh---hhhccccceEEEEehhhhhcchhHHHHHHHHHhcCC
Confidence 6888888777664 346789999999999998865544444444455566
Q ss_pred CCcEEEecCCCChHHHHH
Q 042373 264 DRQAVLFSPTFPPRVEIL 281 (494)
Q Consensus 264 ~~Q~ilfSAT~~~~v~~l 281 (494)
.++++++|||.+.....+
T Consensus 156 ~~~~l~~SATp~~~~~~~ 173 (200)
T d1wp9a1 156 NPLVIGLTASPGSTPEKI 173 (200)
T ss_dssp SCCEEEEESCSCSSHHHH
T ss_pred CCcEEEEEecCCCcHHHH
Confidence 789999999986554443
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=7.8e-19 Score=159.22 Aligned_cols=103 Identities=22% Similarity=0.357 Sum_probs=83.8
Q ss_pred CcEEEecCCCChHHHHHHHh---cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEe
Q 042373 265 RQAVLFSPTFPPRVEILARK---TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFI 338 (494)
Q Consensus 265 ~Q~ilfSAT~~~~v~~l~~~---~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv 338 (494)
..+..+.+-++..-..-+.. .|..+||||||+++||+|+++|++|||||+|.+.+.|+||+||+|| .|.|++|+
T Consensus 52 ~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~ 131 (162)
T d1fuka_ 52 FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFV 131 (162)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEE
T ss_pred ceEEEeccCCchhhHHHHHHHHhhcccceeeccccccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEc
Confidence 34444555555443322211 8999999999999999999999999999999999999999999655 77799999
Q ss_pred cccCHHHHHHHHHHHHhccCcchHHHHHH
Q 042373 339 SEENAIYATDLVKAFELSELVVRDDLKAV 367 (494)
Q Consensus 339 ~~~~~~~~~~i~~~l~~~~~~vp~~l~~~ 367 (494)
++.+...+..|++.++...+++|.++.++
T Consensus 132 ~~~d~~~~~~i~~~~~~~~~~ip~~~~~l 160 (162)
T d1fuka_ 132 TNEDVGAMRELEKFYSTQIEELPSDIATL 160 (162)
T ss_dssp ETTTHHHHHHHHHHSSCCCEECCSCCTTT
T ss_pred CHHHHHHHHHHHHHHcCcCCCCChHHHHh
Confidence 99999999999999999999999876543
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.5e-18 Score=156.75 Aligned_cols=80 Identities=26% Similarity=0.420 Sum_probs=74.0
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHHHHHHHhccCcch
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDLVKAFELSELVVR 361 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i~~~l~~~~~~vp 361 (494)
.|+.+||||||+++||||+|+|++|||||+|.+.+.|+||+||+|| .|.+|+|+++.+...+..|.+.++...+++|
T Consensus 82 ~g~~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~i~e~p 161 (168)
T d2j0sa2 82 SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMP 161 (168)
T ss_dssp HTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECC
T ss_pred cCCccEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEECHHHHHHHHHHHHHHcCcCCCCC
Confidence 8999999999999999999999999999999999999999999655 6899999999999999999999988888888
Q ss_pred HHH
Q 042373 362 DDL 364 (494)
Q Consensus 362 ~~l 364 (494)
..+
T Consensus 162 ~~~ 164 (168)
T d2j0sa2 162 MNV 164 (168)
T ss_dssp SCC
T ss_pred cCh
Confidence 543
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=1.1e-17 Score=152.56 Aligned_cols=102 Identities=15% Similarity=0.195 Sum_probs=86.2
Q ss_pred CCcEEEecCCCChHHHHHHHh---cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCC---CcceEEEE
Q 042373 264 DRQAVLFSPTFPPRVEILARK---TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSW---LKSCAFRF 337 (494)
Q Consensus 264 ~~Q~ilfSAT~~~~v~~l~~~---~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaG---r~G~aitf 337 (494)
+..+..+.+.++..-...+.. .|..+|||||++++||+|++++++|||||+|.++..|+||+||+| +.|.+|+|
T Consensus 56 g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~ 135 (171)
T d1s2ma2 56 GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINL 135 (171)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEE
T ss_pred cccccccccccchhhhhhhhhhcccCccccccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEEE
Confidence 455666677666544332222 899999999999999999999999999999999999999999954 58899999
Q ss_pred ecccCHHHHHHHHHHHHhccCcchHHHH
Q 042373 338 ISEENAIYATDLVKAFELSELVVRDDLK 365 (494)
Q Consensus 338 v~~~~~~~~~~i~~~l~~~~~~vp~~l~ 365 (494)
+++.+...+..|.+.++....++|..+.
T Consensus 136 v~~~e~~~~~~i~~~l~~~~~~~p~~~d 163 (171)
T d1s2ma2 136 INWNDRFNLYKIEQELGTEIAAIPATID 163 (171)
T ss_dssp ECGGGHHHHHHHHHHHTCCCEECCSSCC
T ss_pred eCHHHHHHHHHHHHHHCCCCCCCCcccc
Confidence 9999999999999999988888887653
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=4.4e-16 Score=145.65 Aligned_cols=65 Identities=15% Similarity=0.307 Sum_probs=59.3
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccCHHHHHHH
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEENAIYATDL 349 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~~~~~~~i 349 (494)
.|+.+|||||++++||||+|+|++|||||+|.++.+|+||+||+|| .|.|++|+++.+..++..+
T Consensus 78 ~g~~~ilvaTd~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~~~l~~~ 145 (200)
T d1oywa3 78 RDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 145 (200)
T ss_dssp TTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred cccceEEEecchhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecCHHHHHHHHhh
Confidence 8999999999999999999999999999999999999999999655 7899999999877666544
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.64 E-value=3.8e-16 Score=139.90 Aligned_cols=74 Identities=26% Similarity=0.357 Sum_probs=67.7
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCC---CcceEEEEecccCHHHHHHHHHHHHhccC
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSW---LKSCAFRFISEENAIYATDLVKAFELSEL 358 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaG---r~G~aitfv~~~~~~~~~~i~~~l~~~~~ 358 (494)
.|..+|||||++++||||+++|++|||||+|.++..|+||+||+| +.|.+|+|+++.+...+..|.+.++....
T Consensus 76 ~~~~~ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~i~ 152 (155)
T d1hv8a2 76 QKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIK 152 (155)
T ss_dssp TTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCC
T ss_pred cccceeeeehhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEchHHHHHHHHHHHHHCCCcc
Confidence 899999999999999999999999999999999999999999955 57889999999999999999888876543
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.60 E-value=8.8e-16 Score=132.14 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=77.2
Q ss_pred HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------------------------
Q 042373 156 ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------------------------ 211 (494)
Q Consensus 156 l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------------------------ 211 (494)
..|+++++++|||||||..++..++...... +.++||++|+++|+.|.
T Consensus 5 ~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~--------~~~vli~~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (140)
T d1yksa1 5 KKGMTTVLDFHPGAGKTRRFLPQILAECARR--------RLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAFSAHGSGRE 76 (140)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHT--------TCCEEEEESSHHHHHHHHHHTTTSCEEEESSCCCCCCCSSC
T ss_pred HcCCcEEEEcCCCCChhHHHHHHHHHHhhhc--------CceeeeeecchhHHHHHHHHhhhhhhhhccccccccccccc
Confidence 3689999999999999999887777776553 56899999999999998
Q ss_pred ----hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCCh--hHHHHHHHhhcCCCcEEEecCCCC
Q 042373 212 ----VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFE--PQITRIVQNIRPDRQAVLFSPTFP 275 (494)
Q Consensus 212 ----~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~--~~i~~Il~~l~~~~Q~ilfSAT~~ 275 (494)
++...+..... ....+.++++||+||||++...++. ..+..+. . .+..+++++|||.|
T Consensus 77 ~~~~~~~~~l~~~~~----~~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~-~-~~~~~~l~lTATPp 140 (140)
T d1yksa1 77 VIDAMCHATLTYRML----EPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRA-R-ANESATILMTATPP 140 (140)
T ss_dssp CEEEEEHHHHHHHHT----SSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHH-H-TTSCEEEEECSSCT
T ss_pred chhhhhHHHHHHHHh----ccccccceeEEEEccccccChhhHHHHHHHHHHh-h-CCCCCEEEEEcCCC
Confidence 33344333322 2346789999999999987544322 2222222 2 35789999999987
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.58 E-value=1.7e-15 Score=139.39 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=62.7
Q ss_pred CCcEEEecCCCChHHHHHHHh---cCCccceeeccccccCCCCCCceEEEecCCCC-----CHhHHHhhhccCCCcceEE
Q 042373 264 DRQAVLFSPTFPPRVEILARK---TNVCNLSIANSVRARGLDEKELELVINFDAPN-----DYEDYVHHCCQSWLKSCAF 335 (494)
Q Consensus 264 ~~Q~ilfSAT~~~~v~~l~~~---~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~-----s~~~yvhR~GRaGr~G~ai 335 (494)
+..+..+++-++..-..-+.. .|+++|||||++++||||+|+|++|||||+|. +...|+||+||+||.|.+.
T Consensus 55 g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv~~rGiDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~~ 134 (181)
T d1t5la2 55 GIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGH 134 (181)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCCCSSSCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCE
T ss_pred CcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhHHHccCCCCCCCEEEEecCCcccccccHHHHHHHHHhhccccCce
Confidence 556677777777654333322 99999999999999999999999999999996 6899999999999987666
Q ss_pred EEecc
Q 042373 336 RFISE 340 (494)
Q Consensus 336 tfv~~ 340 (494)
+++..
T Consensus 135 ~~~~~ 139 (181)
T d1t5la2 135 VIMYA 139 (181)
T ss_dssp EEEEC
T ss_pred eEeec
Confidence 55543
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.7e-14 Score=130.90 Aligned_cols=101 Identities=23% Similarity=0.411 Sum_probs=82.3
Q ss_pred CCcEEEecCCCChHHHHHHH---hcCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccC---CCcceEEEE
Q 042373 264 DRQAVLFSPTFPPRVEILAR---KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQS---WLKSCAFRF 337 (494)
Q Consensus 264 ~~Q~ilfSAT~~~~v~~l~~---~~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRa---Gr~G~aitf 337 (494)
...+..+.+-++..-....- +.|.++|||||+++++|+|+|++++|||||+|.+...|+||+||+ |+.|.||+|
T Consensus 51 ~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l 130 (168)
T d1t5ia_ 51 NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 130 (168)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEE
T ss_pred cccccccccccchhhhhhhhhhhccccceeeeccccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEE
Confidence 45667777777765433222 289999999999999999999999999999999999999999885 457889999
Q ss_pred eccc-CHHHHHHHHHHHHhccCcchHHH
Q 042373 338 ISEE-NAIYATDLVKAFELSELVVRDDL 364 (494)
Q Consensus 338 v~~~-~~~~~~~i~~~l~~~~~~vp~~l 364 (494)
+++. +...+..+.+.++....++|+++
T Consensus 131 ~~~~~~~~~~~~i~~~~~~~~~elp~~~ 158 (168)
T d1t5ia_ 131 VSDENDAKILNDVQDRFEVNISELPDEI 158 (168)
T ss_dssp ECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred ECchHHHHHHHHHHHHHcCCcccCCchh
Confidence 9875 56788889999998888899876
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.44 E-value=1.7e-13 Score=124.74 Aligned_cols=79 Identities=11% Similarity=0.089 Sum_probs=59.7
Q ss_pred CCcEEEecCCCChHHHHHHHh---cCCccceeeccccccCCCCCCceEEEecCCCC-----CHhHHHhhhccCCCc--ce
Q 042373 264 DRQAVLFSPTFPPRVEILARK---TNVCNLSIANSVRARGLDEKELELVINFDAPN-----DYEDYVHHCCQSWLK--SC 333 (494)
Q Consensus 264 ~~Q~ilfSAT~~~~v~~l~~~---~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~-----s~~~yvhR~GRaGr~--G~ 333 (494)
+.....+++-++..-..-+.. .|+++|||||++++||||+|+|++|||||.|. +.+.|+||+||+||. |.
T Consensus 55 Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v~~~GiDip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~g~ 134 (174)
T d1c4oa2 55 GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGE 134 (174)
T ss_dssp TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCE
T ss_pred CCceEEEecccchHHHHHHHHHHHCCCeEEEEeeeeeeeeccCCCCcEEEEeccccccccchhHHHHHHhhhhhhcCCCe
Confidence 455566666666544332222 89999999999999999999999999999765 568899999999885 55
Q ss_pred EEEEecccC
Q 042373 334 AFRFISEEN 342 (494)
Q Consensus 334 aitfv~~~~ 342 (494)
++.+.....
T Consensus 135 ~~~~~~~~~ 143 (174)
T d1c4oa2 135 VWLYADRVS 143 (174)
T ss_dssp EEEECSSCC
T ss_pred eEEeecCCC
Confidence 555555443
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.43 E-value=1.3e-13 Score=128.70 Aligned_cols=109 Identities=21% Similarity=0.156 Sum_probs=79.7
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-----------
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ----------- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi----------- 211 (494)
+|.++|.+++..++.++..++.+|||+|||+.++..+ ..+ +.++||+||++.|+.|.
T Consensus 70 ~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~-~~~-----------~~~~Liv~p~~~L~~q~~~~~~~~~~~~ 137 (206)
T d2fz4a1 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAI-NEL-----------STPTLIVVPTLALAEQWKERLGIFGEEY 137 (206)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHH-HHS-----------CSCEEEEESSHHHHHHHHHHHGGGCGGG
T ss_pred CcCHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhHH-HHh-----------cCceeEEEcccchHHHHHHHHHhhcccc
Confidence 6899999999999999999999999999998765433 322 34689999999999997
Q ss_pred ----------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCCC
Q 042373 212 ----------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPTF 274 (494)
Q Consensus 212 ----------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT~ 274 (494)
+|...+...... ...++.+||+||||++.. +....++..++ .+..+++|||+
T Consensus 138 ~~~~~~~~~~~~~i~i~t~~~~~~~~~~------~~~~~~lvIiDEaH~~~a----~~~~~i~~~~~-~~~~lgLTATl 205 (206)
T d2fz4a1 138 VGEFSGRIKELKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPA----ESYVQIAQMSI-APFRLGLTATF 205 (206)
T ss_dssp EEEESSSCBCCCSEEEEEHHHHHHTHHH------HTTTCSEEEEECSSCCCT----TTHHHHHHTCC-CSEEEEEEESC
T ss_pred hhhcccccccccccccceehhhhhhhHh------hCCcCCEEEEECCeeCCc----HHHHHHHhccC-CCcEEEEecCC
Confidence 222222211111 145788999999999753 34556666553 44568899997
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.40 E-value=1.9e-13 Score=133.85 Aligned_cols=116 Identities=17% Similarity=0.112 Sum_probs=85.3
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh----------
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV---------- 212 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~---------- 212 (494)
+|.++|..++..++..+..++.+|||+|||+....-+ ..+.... ..++|||+|+++|+.|.+
T Consensus 113 ~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~-~~~~~~~-------~~k~Liivp~~~Lv~Q~~~~f~~~~~~~ 184 (282)
T d1rifa_ 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLA-RYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHH-HHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred ccchHHHHHHHHHHhcCCceeEEEcccCccHHHHHHH-HHhhhcc-------cceEEEEEcCchhHHHHHHHHHHhhccc
Confidence 6999999999999999999999999999998765533 3333321 347999999999999982
Q ss_pred --------------------------hhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCc
Q 042373 213 --------------------------RRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQ 266 (494)
Q Consensus 213 --------------------------TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q 266 (494)
|...+ ... ....++++++||+||||++- .+.+..|+..+.+...
T Consensus 185 ~~~~~~~~~g~~~~~~~~~~~~i~i~t~qs~----~~~--~~~~~~~f~~VIvDEaH~~~----a~~~~~il~~~~~~~~ 254 (282)
T d1rifa_ 185 HAMIKKIGGGASKDDKYKNDAPVVVGTWQTV----VKQ--PKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCMF 254 (282)
T ss_dssp GGGEEECSTTCSSTTCCCTTCSEEEECHHHH----TTS--CGGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCCE
T ss_pred cccceeecceecccccccccceEEEEeeehh----hhh--cccccCCCCEEEEECCCCCC----chhHHHHHHhccCCCe
Confidence 21111 110 11235689999999999865 3566777777755555
Q ss_pred EEEecCCCCh
Q 042373 267 AVLFSPTFPP 276 (494)
Q Consensus 267 ~ilfSAT~~~ 276 (494)
.++||||++.
T Consensus 255 rlGlTaT~~~ 264 (282)
T d1rifa_ 255 KFGLSGSLRD 264 (282)
T ss_dssp EEEECSSCCT
T ss_pred EEEEEeecCC
Confidence 6899999864
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.36 E-value=3.3e-13 Score=117.01 Aligned_cols=98 Identities=17% Similarity=0.028 Sum_probs=65.6
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--------------------------
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-------------------------- 211 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-------------------------- 211 (494)
.+..++.+|||||||+.+...+ ... +.++||++||++|+.|+
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~----~~~--------~~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAY----AAQ--------GYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTITTGSP 75 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHH----HTT--------TCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEECCCCS
T ss_pred CCEEEEEeCCCCCHHHHHHHHH----HHc--------CCcEEEEcChHHHHHHHHHHHHHHhhccccccccccccccccc
Confidence 3567999999999997543222 221 66899999999999998
Q ss_pred ---hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhc--CCCcEEEecCCC
Q 042373 212 ---VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIR--PDRQAVLFSPTF 274 (494)
Q Consensus 212 ---~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~--~~~Q~ilfSAT~ 274 (494)
+|.+.+.... ...++++++||+||+|++-. .....+..+++.++ +...++++|||.
T Consensus 76 ~~~~~~~~~~~~~------~~~~~~~~~vIiDE~H~~~~-~~~~~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 76 ITYSTYGKFLADG------GCSGGAYDIIICDECHSTDA-TSILGIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp EEEEEHHHHHHTT------GGGGCCCSEEEEETTTCCSH-HHHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred eEEEeeeeecccc------chhhhcCCEEEEecccccCH-HHHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 2333322111 12478899999999997632 12223555555543 466789999993
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.35 E-value=4.2e-13 Score=117.86 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=50.2
Q ss_pred cCCccceeeccccccCCCCCCceEEEecC----CCCCHhHHHhhhccCCC--cceEEEEecccC
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFD----APNDYEDYVHHCCQSWL--KSCAFRFISEEN 342 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd----~P~s~~~yvhR~GRaGr--~G~aitfv~~~~ 342 (494)
.++.+||||||+++|||| ++|++||||| +|.+.++|+||+||+|| .| .++|+++.+
T Consensus 76 ~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~~~~~~P~~~~~y~qr~GR~gRg~~G-~~~~i~~~e 137 (138)
T d1jr6a_ 76 TNGDVVVVATDALMTGFT-GDFDSVIDCNTSDGKPQDAVSRTQRRGRTGRGKPG-IYRFVAPGE 137 (138)
T ss_dssp TSSCEEEEESSSSCSSSC-CCBSEEEECSEETTEECCHHHHHHHHTTBCSSSCE-EEEECCSSC
T ss_pred hhhcceeehhHHHHhccc-cccceEEEEEecCCCCCCHHHHHhHhccccCCCCc-EEEEEcCCC
Confidence 789999999999999999 9999999865 69999999999999887 66 578988875
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.35 E-value=6.8e-13 Score=129.44 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=55.1
Q ss_pred cCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCC--cceEEEEecccCH
Q 042373 285 TNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWL--KSCAFRFISEENA 343 (494)
Q Consensus 285 ~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr--~G~aitfv~~~~~ 343 (494)
.|.++|||||+++++|||+|+|++|||||+|.++..|+||+||+|| .|.+++|+++...
T Consensus 217 ~g~~~vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~~~~~~~l~~~~~~ 277 (286)
T d1wp9a2 217 RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTR 277 (286)
T ss_dssp HTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEETTSH
T ss_pred cCCCcEEEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCCCCEEEEEEeCCCH
Confidence 7899999999999999999999999999999999999999999877 5889999998743
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=1.4e-11 Score=116.95 Aligned_cols=144 Identities=17% Similarity=0.216 Sum_probs=102.9
Q ss_pred CCCHHHHHHHHhCCCCCCChhHHHHHHHHHc----C--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEE
Q 042373 127 GLTTKILETFSKLNHENPVAIQAPASALIIS----G--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLV 200 (494)
Q Consensus 127 ~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~----g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLI 200 (494)
..+....+.+.+.-.-.+|+-|.+++..|.+ + .+.+++|.||||||.+|+..+...+.. |.++++
T Consensus 39 ~~~~~~~~~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~---------g~qv~~ 109 (233)
T d2eyqa3 39 KHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---------HKQVAV 109 (233)
T ss_dssp CCCHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---------TCEEEE
T ss_pred CCCHHHHHhhhhccccccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHc---------CCceEE
Confidence 3455666665543334799999999988763 3 378999999999999999999988743 779999
Q ss_pred EccchhHHHhh---------------------hhh---hHHHHHHHhcCcc-----------eecccceEEEEEcccchh
Q 042373 201 MAPTGELVRQQ---------------------VRR---GRMIDLLCKNGVK-----------ITNLTRVTYLVLDEADRM 245 (494)
Q Consensus 201 l~PTreLa~Qi---------------------~TP---grl~dll~~~~~~-----------~~~l~~l~~lVlDEaD~m 245 (494)
|+||..|+.|+ .+. ...+.-+..+... .+.++++.+||+||-|+
T Consensus 110 l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~~~~~f~~LgLiIiDEeH~- 188 (233)
T d2eyqa3 110 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHR- 188 (233)
T ss_dssp ECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGG-
T ss_pred EccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhccCCccccccceeeechhh-
Confidence 99999999998 011 1233334433322 13578999999999997
Q ss_pred cccCChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 246 FDMGFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 246 l~~gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
.|+. |- ..+.....+..++++|||..++...++..
T Consensus 189 --fg~k-Q~-~~l~~~~~~~~~l~~SATPiprtl~~~~~ 223 (233)
T d2eyqa3 189 --FGVR-HK-ERIKAMRANVDILTLTATPIPRTLNMAMS 223 (233)
T ss_dssp --SCHH-HH-HHHHHHHTTSEEEEEESSCCCHHHHHHHT
T ss_pred --hhhH-HH-HHHHhhCCCCCEEEEecchhHHHHHHHHH
Confidence 3332 22 23344456789999999998887766643
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.24 E-value=1.6e-11 Score=118.67 Aligned_cols=141 Identities=20% Similarity=0.183 Sum_probs=97.8
Q ss_pred HHHHhCCCCCCChhHHHHHHHHHc----C--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH
Q 042373 134 ETFSKLNHENPVAIQAPASALIIS----G--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL 207 (494)
Q Consensus 134 ~~l~~~g~~~ptpiQ~~aip~il~----g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL 207 (494)
..+..+.| ++|.-|.+|+..|.. + .+.+++|.||||||..|+..++..+.. |-++++++||..|
T Consensus 75 ~f~~~LPF-eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~---------g~q~~~m~Pt~~L 144 (264)
T d1gm5a3 75 EFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---------GFQTAFMVPTSIL 144 (264)
T ss_dssp HHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---------TSCEEEECSCHHH
T ss_pred HHHhhccc-cCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc---------ccceeEEeehHhh
Confidence 34466777 699999999999863 3 478999999999999999999988865 6789999999999
Q ss_pred HHhh---------------------hhh---hHHHHHHHhcCcce-----------ecccceEEEEEcccchhcccCChh
Q 042373 208 VRQQ---------------------VRR---GRMIDLLCKNGVKI-----------TNLTRVTYLVLDEADRMFDMGFEP 252 (494)
Q Consensus 208 a~Qi---------------------~TP---grl~dll~~~~~~~-----------~~l~~l~~lVlDEaD~ml~~gf~~ 252 (494)
|.|. .++ ..++.-+..+.... +.++++.++|+||-|+..-.+.
T Consensus 145 a~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~~~~f~~LglviiDEqH~fgv~Qr-- 222 (264)
T d1gm5a3 145 AIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQR-- 222 (264)
T ss_dssp HHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC-------
T ss_pred hHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcCCCCccccceeeeccccccchhhH--
Confidence 9998 111 12333333333221 3467999999999998542221
Q ss_pred HHHHHHHhhcCCCcEEEecCCCChHHHHHHHhcCCccc
Q 042373 253 QITRIVQNIRPDRQAVLFSPTFPPRVEILARKTNVCNL 290 (494)
Q Consensus 253 ~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~~g~~~I 290 (494)
..+..-..+..++++|||..++...++. .|..++
T Consensus 223 ---~~l~~~~~~~~~l~~SATPiprtl~~~~-~g~~~~ 256 (264)
T d1gm5a3 223 ---EALMNKGKMVDTLVMSATPIPRSMALAF-YGDLDV 256 (264)
T ss_dssp ---CCCCSSSSCCCEEEEESSCCCHHHHHHH-TCCSSC
T ss_pred ---HHHHHhCcCCCEEEEECCCCHHHHHHHH-cCCCCe
Confidence 1111222467899999998777666553 344443
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.17 E-value=1e-10 Score=108.53 Aligned_cols=133 Identities=8% Similarity=0.125 Sum_probs=88.9
Q ss_pred CCeEEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccch-hcccCChhHHHHHHHhhcCCCcEEEecCC
Q 042373 195 SPVGLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADR-MFDMGFEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 195 ~p~aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~-ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
+-.+||.||||..|...+. .|...+.... .. ++... +........-..+...+.. -+.+..+-
T Consensus 40 ~~~~LVF~~sRk~~~~~A~--~L~~~~~~~~----~~--------~~~~~~~~~~~~~~~~~~L~~~l~~--GIa~hh~~ 103 (201)
T d2p6ra4 40 NGGVLVFESTRRGAEKTAV--KLSAITAKYV----EN--------EGLEKAILEENEGEMSRKLAECVRK--GAAFHHAG 103 (201)
T ss_dssp TCCEEEECSSHHHHHHHHH--HHHHHHHTTC----CC--------SSHHHHHHTTCCSHHHHHHHHHHHT--TCCEECTT
T ss_pred CCcEEEEeCCHHHHHHHHH--HHHHHHHhhh----ch--------hHHHHHHHHhhhhhhhHHHHHHHhc--cHHHHHHH
Confidence 3469999999988876532 3444333211 00 11111 1111111222223333322 24566788
Q ss_pred CChHHHHHHHh---cCCccceeeccccccCCCCCCceEEEe-------cCCCCCHhHHHhhhccCCC-----cceEEEEe
Q 042373 274 FPPRVEILARK---TNVCNLSIANSVRARGLDEKELELVIN-------FDAPNDYEDYVHHCCQSWL-----KSCAFRFI 338 (494)
Q Consensus 274 ~~~~v~~l~~~---~g~~~ILVaTdv~~rGlDi~~v~~VIn-------yd~P~s~~~yvhR~GRaGr-----~G~aitfv 338 (494)
+++....++.. .|.++|||||+.+++|||+|.+.+||+ ++.|.+..+|+||+||||| .|.++.++
T Consensus 104 l~~~~r~~ie~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~ 183 (201)
T d2p6ra4 104 LLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 183 (201)
T ss_dssp SCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEEC
T ss_pred hhhhhHHHHHHHHhCCCceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEe
Confidence 88887766654 899999999999999999999999996 7789999999999999988 45678777
Q ss_pred cccCH
Q 042373 339 SEENA 343 (494)
Q Consensus 339 ~~~~~ 343 (494)
.+.+.
T Consensus 184 ~~~~~ 188 (201)
T d2p6ra4 184 GKRDR 188 (201)
T ss_dssp CGGGH
T ss_pred CCCCh
Confidence 77654
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.12 E-value=1.1e-11 Score=115.66 Aligned_cols=87 Identities=9% Similarity=0.063 Sum_probs=61.8
Q ss_pred CCCcEEEecCCCChHHHHHHH---hcCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHh-hhcc---CCCcceEE
Q 042373 263 PDRQAVLFSPTFPPRVEILAR---KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVH-HCCQ---SWLKSCAF 335 (494)
Q Consensus 263 ~~~Q~ilfSAT~~~~v~~l~~---~~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvh-R~GR---aGr~G~ai 335 (494)
++..+.++.+-|++.-..-+. .+|+++|||||+++++|||+|++++||+|+.|..-..|+| +.|| +|+.|.||
T Consensus 63 p~~~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~ 142 (206)
T d1gm5a4 63 PEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCF 142 (206)
T ss_dssp ---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEE
T ss_pred CCCeEEEEeecccHHHHHHHHHHHHCCCEEEEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeE
Confidence 445556666666654322222 2999999999999999999999999999999985444544 3455 66689999
Q ss_pred EEecccCHHHHHHH
Q 042373 336 RFISEENAIYATDL 349 (494)
Q Consensus 336 tfv~~~~~~~~~~i 349 (494)
+|+.+.+......+
T Consensus 143 l~~~~~~~~~~~rl 156 (206)
T d1gm5a4 143 LVVGDVGEEAMERL 156 (206)
T ss_dssp CCCCSCCHHHHHHH
T ss_pred eeeccccccchhhh
Confidence 99987665444444
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.96 E-value=3e-11 Score=115.47 Aligned_cols=62 Identities=15% Similarity=0.096 Sum_probs=47.8
Q ss_pred cCCccceeec----cccccCCCCCC-ceEEEecCCCCCHhHHHhhhcc---CCCcceEEEEecccCHHHHHHHH
Q 042373 285 TNVCNLSIAN----SVRARGLDEKE-LELVINFDAPNDYEDYVHHCCQ---SWLKSCAFRFISEENAIYATDLV 350 (494)
Q Consensus 285 ~g~~~ILVaT----dv~~rGlDi~~-v~~VInyd~P~s~~~yvhR~GR---aGr~G~aitfv~~~~~~~~~~i~ 350 (494)
.|.++||||| ++++||||+|+ |++|||||+|. |+||+|| +|+.|.+++++...+......+.
T Consensus 67 ~g~~~vLVaT~a~~~v~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~~~~~~~~~~~~~~~~~l~ 136 (248)
T d1gkub2 67 EGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLL 136 (248)
T ss_dssp HTSCSEEEEECC------CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTC
T ss_pred hCCCeEEEEeccccchhhhccCccccccEEEEeCCCc----chhhhhhhhccCcceEeeeeccHhhHHHHHHHH
Confidence 8999999999 89999999996 99999999994 8898888 55577788888877766554433
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.79 E-value=3.4e-09 Score=97.38 Aligned_cols=88 Identities=13% Similarity=0.173 Sum_probs=63.1
Q ss_pred ChhHHHHHHHhhcCCCcEEEecCCCChHH-HHHHH--hcCCccceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhc
Q 042373 250 FEPQITRIVQNIRPDRQAVLFSPTFPPRV-EILAR--KTNVCNLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCC 326 (494)
Q Consensus 250 f~~~i~~Il~~l~~~~Q~ilfSAT~~~~v-~~l~~--~~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~G 326 (494)
+...+..|.+.+... .+.+.++..- ..+.. +.|.++|||||+++++|||+|.+++||+|+.|.+...|+||+|
T Consensus 102 ~~~~~~~l~~~l~~~----~i~g~~~~~~R~~~l~~F~~~~~~vLv~~~~~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iG 177 (200)
T d2fwra1 102 HNELVYRISKVFLIP----AITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLG 177 (200)
T ss_dssp CHHHHHHHHHHTTCC----BCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHH
T ss_pred cHHHHHHHHhhcCcc----eeeCCCCHHHHHHHHHHhhcCCeeeeeecchhhcccCCCCCCEEEEeCCCCCHHHHHHHHH
Confidence 445566666666322 2344444432 22221 2789999999999999999999999999999999999999999
Q ss_pred cCCCcc------eEEEEeccc
Q 042373 327 QSWLKS------CAFRFISEE 341 (494)
Q Consensus 327 RaGr~G------~aitfv~~~ 341 (494)
|++|.| ..+.|++.+
T Consensus 178 R~~R~~~~k~~~~i~~~v~~~ 198 (200)
T d2fwra1 178 RILRPSKGKKEAVLYELISRG 198 (200)
T ss_dssp HSBCCCTTTCCEEEEEEEECS
T ss_pred hcCCCCCCCcEEEEEEEecCC
Confidence 976643 456666643
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=98.50 E-value=2.2e-08 Score=97.01 Aligned_cols=70 Identities=7% Similarity=-0.034 Sum_probs=52.6
Q ss_pred cCCccceeecccccc---CCCCCCceEEEecCCCCCHhHHHhhhccCCC--cceEEEEec---ccCHHHHHHHHHHHH
Q 042373 285 TNVCNLSIANSVRAR---GLDEKELELVINFDAPNDYEDYVHHCCQSWL--KSCAFRFIS---EENAIYATDLVKAFE 354 (494)
Q Consensus 285 ~g~~~ILVaTdv~~r---GlDi~~v~~VInyd~P~s~~~yvhR~GRaGr--~G~aitfv~---~~~~~~~~~i~~~l~ 354 (494)
.|+.++||+|+++++ |+|++.|.+|||||+|.|.++|+||+||+|| .|....++. +...-..-.|.+..+
T Consensus 94 ~G~~dvVVaT~~~a~g~~giDid~V~~VI~~d~P~SvesyIQRiGRTGRGr~G~~~~l~~~t~p~~~l~s~al~~~~~ 171 (299)
T d1a1va2 94 TGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPGIYRFVAPGERPSGMFDSSVLCECYD 171 (299)
T ss_dssp CCCBSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCSSSCEEEEESCSCCBCSCBCCHHHHHHHHH
T ss_pred cCCCcEEEEEeehhccCCCCCCCcceEEEeCCCCCCHHHHHhhccccCCCCCceEEEEecCCCHHHHHHHHHHHHHHH
Confidence 789999999999998 6788888899999999999999999999887 454433332 223333334444444
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=6.7e-07 Score=82.57 Aligned_cols=84 Identities=11% Similarity=0.124 Sum_probs=65.3
Q ss_pred HHhhcCCCcEEEecCCCChHHHHHHHh---cCCccceeeccccccCCCCCCceEEEecCCCC-CHhHHHh---hhccCCC
Q 042373 258 VQNIRPDRQAVLFSPTFPPRVEILARK---TNVCNLSIANSVRARGLDEKELELVINFDAPN-DYEDYVH---HCCQSWL 330 (494)
Q Consensus 258 l~~l~~~~Q~ilfSAT~~~~v~~l~~~---~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P~-s~~~yvh---R~GRaGr 330 (494)
+..+-++..+.++...|++.-..-... .|+++|||||.+.+.|||||+++++|.++... -+.++-| |+||.++
T Consensus 51 l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIEvGiDvpnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~ 130 (211)
T d2eyqa5 51 LAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 130 (211)
T ss_dssp HHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTB
T ss_pred HHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhhhccCCCCCcEEEEecchhccccccccccceeeecCc
Confidence 333446778888899998765443322 99999999999999999999999999999987 4555555 6666777
Q ss_pred cceEEEEeccc
Q 042373 331 KSCAFRFISEE 341 (494)
Q Consensus 331 ~G~aitfv~~~ 341 (494)
.|.||.++...
T Consensus 131 ~s~c~l~~~~~ 141 (211)
T d2eyqa5 131 QAYAWLLTPHP 141 (211)
T ss_dssp CEEEEEEECCG
T ss_pred cceEEEEecCC
Confidence 89999888653
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.05 E-value=1.5e-05 Score=76.90 Aligned_cols=127 Identities=19% Similarity=0.300 Sum_probs=73.5
Q ss_pred CCChhHHHHHHHHH---------cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--
Q 042373 143 NPVAIQAPASALII---------SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il---------~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-- 211 (494)
.+.|+|.+++.-+. .+..+|+.-..|.|||+..+. ++..+..+..... .....+|||||.. |..|.
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia-~l~~l~~~~~~~~-~~~~~~LIV~P~s-l~~qW~~ 131 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCIT-LIWTLLKQSPDCK-PEIDKVIVVSPSS-LVRNWYN 131 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHH-HHHHHHHCCTTSS-CSCSCEEEEECHH-HHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHH-HHHHHHHhccccc-CCCCcEEEEccch-hhHHHHH
Confidence 57899999987553 345688888999999986443 4444444322111 1134699999985 66665
Q ss_pred ----hhh-------------h----HHHHHHHhcCc------------------ceecccceEEEEEcccchhcccCChh
Q 042373 212 ----VRR-------------G----RMIDLLCKNGV------------------KITNLTRVTYLVLDEADRMFDMGFEP 252 (494)
Q Consensus 212 ----~TP-------------g----rl~dll~~~~~------------------~~~~l~~l~~lVlDEaD~ml~~gf~~ 252 (494)
.++ . .+...+..... ....-.+..+||+||+|++-..+ .
T Consensus 132 Ei~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~l~~~~~~~vI~DEaH~ikn~~--s 209 (298)
T d1z3ix2 132 EVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSD--N 209 (298)
T ss_dssp HHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTC--H
T ss_pred HHHhhcCCceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhcccccceeeeeccccccccccc--c
Confidence 111 0 11111111110 00112246789999999987543 3
Q ss_pred HHHHHHHhhcCCCcEEEecCCCC
Q 042373 253 QITRIVQNIRPDRQAVLFSPTFP 275 (494)
Q Consensus 253 ~i~~Il~~l~~~~Q~ilfSAT~~ 275 (494)
+....+..+. ....+++|||.-
T Consensus 210 ~~~~a~~~l~-~~~rllLTGTPi 231 (298)
T d1z3ix2 210 QTYLALNSMN-AQRRVLISGTPI 231 (298)
T ss_dssp HHHHHHHHHC-CSEEEEECSSCS
T ss_pred hhhhhhhccc-cceeeeecchHH
Confidence 3444445553 455688899963
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=2.7e-05 Score=77.49 Aligned_cols=120 Identities=19% Similarity=0.246 Sum_probs=77.5
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh----------
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV---------- 212 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~---------- 212 (494)
..+..|.+|+..++.++-+++.++.|||||... .-++..+.... ...+.++++++||..-|..+.
T Consensus 148 ~~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i-~~~l~~l~~~~----~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~ 222 (359)
T d1w36d1 148 DEINWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQMA----DGERCRIRLAAPTGKAAARLTESLGKALRQL 222 (359)
T ss_dssp TSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHH-HHHHHHHHHTC----SSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred ccccHHHHHHHHHHcCCeEEEEcCCCCCceehH-HHHHHHHHHHH----hccCCeEEEecCcHHHHHHHHHHHHHHHhhc
Confidence 457789999999999999999999999999763 23334443321 112668999999987776651
Q ss_pred ---------------hhhHHHHHHHhcC---cceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 213 ---------------RRGRMIDLLCKNG---VKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 213 ---------------TPgrl~dll~~~~---~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
|..++........ ....+...+++||+|||-.+- .+.+..++..++...++|++.
T Consensus 223 ~~~~~~~~~~~~~~~t~~~ll~~~~~~~~~~~~~~~~l~~d~lIIDEaSmv~----~~l~~~ll~~~~~~~~lILvG 295 (359)
T d1w36d1 223 PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID----LPMMSRLIDALPDHARVIFLG 295 (359)
T ss_dssp SCCSCCCCSCSCCCBTTTSCC-----------CTTSCCSCSEEEECSGGGCB----HHHHHHHHHTCCTTCEEEEEE
T ss_pred CchhhhhhhhhhhhhHHHHHHhhhhcchHHHHhhhcccccceeeehhhhccC----HHHHHHHHHHhcCCCEEEEEC
Confidence 1111111110000 001123457899999998543 456778888888888888764
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=97.75 E-value=5.6e-05 Score=69.71 Aligned_cols=115 Identities=17% Similarity=0.249 Sum_probs=69.0
Q ss_pred CCChhHHHHHHHHH----cCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 143 NPVAIQAPASALII----SGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il----~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
++.|+|.+++.-+. .+..+|+.-.+|.|||+..+. ++.++....+ ...+||+||.. +..|.
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~-~~~~~~~~~~------~~~~LIv~p~~-l~~~W~~e~~~~ 83 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKENE------LTPSLVICPLS-VLKNWEEELSKF 83 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHTTC------CSSEEEEECST-THHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHH-hhhhhhhccc------ccccceecchh-hhhHHHHHHHhh
Confidence 57899999986543 356789999999999998654 4455544321 34689999953 44443
Q ss_pred -------------------------hhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCc
Q 042373 212 -------------------------VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQ 266 (494)
Q Consensus 212 -------------------------~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q 266 (494)
.+... +... ..+.--...+||+||+|++-... ......+..+. ...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~vvi~~~~~----~~~~--~~l~~~~~~~vI~DEah~~k~~~--s~~~~~~~~l~-a~~ 154 (230)
T d1z63a1 84 APHLRFAVFHEDRSKIKLEDYDIILTTYAV----LLRD--TRLKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SKY 154 (230)
T ss_dssp CTTSCEEECSSSTTSCCGGGSSEEEEEHHH----HTTC--HHHHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EEE
T ss_pred cccccceeeccccchhhccCcCEEEeeHHH----HHhH--HHHhcccceEEEEEhhhcccccc--hhhhhhhhhhc-cce
Confidence 01111 1100 00011256789999999987543 23333344443 334
Q ss_pred EEEecCCC
Q 042373 267 AVLFSPTF 274 (494)
Q Consensus 267 ~ilfSAT~ 274 (494)
.+++|+|.
T Consensus 155 r~~LTgTP 162 (230)
T d1z63a1 155 RIALTGTP 162 (230)
T ss_dssp EEEECSSC
T ss_pred EEEEecch
Confidence 67889985
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=97.73 E-value=2.7e-05 Score=75.53 Aligned_cols=69 Identities=14% Similarity=0.101 Sum_probs=45.5
Q ss_pred EEecCCCChHHHHHHHhcCCccceeeccccccCCCCCCceEEEecCCC-------------------CCHhHHHhhhccC
Q 042373 268 VLFSPTFPPRVEILARKTNVCNLSIANSVRARGLDEKELELVINFDAP-------------------NDYEDYVHHCCQS 328 (494)
Q Consensus 268 ilfSAT~~~~v~~l~~~~g~~~ILVaTdv~~rGlDi~~v~~VInyd~P-------------------~s~~~yvhR~GRa 328 (494)
++-+.|...+...+ +.+..+|||||+++++||++ +|.+||++.++ -+..+-.||.||+
T Consensus 65 ~l~~~~~~~e~~~~--~~~~~~~~~~t~~~~~~~~~-~~~~vid~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~ 141 (299)
T d1yksa2 65 VLNRKTFEREYPTI--KQKKPDFILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRI 141 (299)
T ss_dssp ECCSSSCC----------CCCSEEEESSSTTCCTTC-CCSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTS
T ss_pred EEcCcCcHhHHhhh--hcCCcCEEEEechhhhceec-CceEEEecCceeceeeecCCCCeeEEeeeecCHHHHHHhcccc
Confidence 34445555554443 37889999999999999999 69999976642 3566778999999
Q ss_pred CCcc---eEEEEec
Q 042373 329 WLKS---CAFRFIS 339 (494)
Q Consensus 329 Gr~G---~aitfv~ 339 (494)
||.+ .++.++.
T Consensus 142 gr~~~~~~~~~~y~ 155 (299)
T d1yksa2 142 GRNPNRDGDSYYYS 155 (299)
T ss_dssp SCCTTCCCEEEEEC
T ss_pred cccCCCceEEEEeC
Confidence 9843 2444544
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=97.29 E-value=0.0012 Score=64.79 Aligned_cols=77 Identities=12% Similarity=0.166 Sum_probs=55.7
Q ss_pred CcEEEecCCCChHH-HHHHHh--cC--Cc-cceeeccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc-----e
Q 042373 265 RQAVLFSPTFPPRV-EILARK--TN--VC-NLSIANSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS-----C 333 (494)
Q Consensus 265 ~Q~ilfSAT~~~~v-~~l~~~--~g--~~-~ILVaTdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G-----~ 333 (494)
...+.+..+.+..- ..+... .+ .. -+|++|.+.+.|||+..+++||+||++.++..+.|++||+.|-| .
T Consensus 143 ~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~ 222 (346)
T d1z3ix1 143 YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCY 222 (346)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEE
T ss_pred ccccccccchhHHHHHHHHHhhhcccccceeeeecchhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceE
Confidence 34555666666432 222222 22 22 36778889999999999999999999999999999999965544 4
Q ss_pred EEEEeccc
Q 042373 334 AFRFISEE 341 (494)
Q Consensus 334 aitfv~~~ 341 (494)
.|.|+...
T Consensus 223 v~rli~~~ 230 (346)
T d1z3ix1 223 IYRLLSTG 230 (346)
T ss_dssp EEEEEETT
T ss_pred EEEEEeCC
Confidence 67777765
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=97.16 E-value=0.00046 Score=64.09 Aligned_cols=75 Identities=11% Similarity=0.053 Sum_probs=45.2
Q ss_pred EEEecCCCChHHH-HHHHh---cCCccceee-ccccccCCCCCCceEEEecCCCCCHhHHHhhhccCCCcc-----eEEE
Q 042373 267 AVLFSPTFPPRVE-ILARK---TNVCNLSIA-NSVRARGLDEKELELVINFDAPNDYEDYVHHCCQSWLKS-----CAFR 336 (494)
Q Consensus 267 ~ilfSAT~~~~v~-~l~~~---~g~~~ILVa-Tdv~~rGlDi~~v~~VInyd~P~s~~~yvhR~GRaGr~G-----~ait 336 (494)
+..+..+.+..-. ..... .....+||+ |...+.|||+..+++||+||+|.++..+.|++||..|-| ..+.
T Consensus 113 ~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~ 192 (244)
T d1z5za1 113 VPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHK 192 (244)
T ss_dssp CCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEE
T ss_pred EEEEecccchhccchhhhhhhccccchhccccccccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEE
Confidence 3444555555432 22222 445566655 578899999999999999999999999999999955544 4667
Q ss_pred Eeccc
Q 042373 337 FISEE 341 (494)
Q Consensus 337 fv~~~ 341 (494)
|+..+
T Consensus 193 l~~~~ 197 (244)
T d1z5za1 193 LISVG 197 (244)
T ss_dssp EEETT
T ss_pred EeeCC
Confidence 77766
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=96.73 E-value=0.0021 Score=56.80 Aligned_cols=57 Identities=18% Similarity=0.074 Sum_probs=44.3
Q ss_pred CCccceeeccccccCCCCC--------CceEEEecCCCCCHhHHHhhhccCCC---cceEEEEecccC
Q 042373 286 NVCNLSIANSVRARGLDEK--------ELELVINFDAPNDYEDYVHHCCQSWL---KSCAFRFISEEN 342 (494)
Q Consensus 286 g~~~ILVaTdv~~rGlDi~--------~v~~VInyd~P~s~~~yvhR~GRaGr---~G~aitfv~~~~ 342 (494)
..-.|.|||+.+.||.||. +-=|||.-..|.+.....|-.||+|| .|.+..|++-+|
T Consensus 81 ~~g~VtIATNmAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD 148 (175)
T d1tf5a4 81 QKGAVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 148 (175)
T ss_dssp STTCEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred CCCceeehhhHHHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCH
Confidence 3446999999999999974 22368888899999988887777665 677888886554
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=96.64 E-value=0.0033 Score=59.09 Aligned_cols=96 Identities=22% Similarity=0.263 Sum_probs=69.1
Q ss_pred CCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-------
Q 042373 139 LNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------- 211 (494)
Q Consensus 139 ~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------- 211 (494)
+|. .|++.|...--.+..|+ |+...||=|||++..+|+.-..+. |..+=|++..--||..=
T Consensus 77 lG~-RhyDVQLiGgi~L~~G~--iaem~TGEGKTL~a~l~a~l~al~---------g~~vhvvTvNdyLA~RDae~m~~i 144 (273)
T d1tf5a3 77 TGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---------GKGVHVVTVNEYLASRDAEQMGKI 144 (273)
T ss_dssp HSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred hce-EEehhHHHHHHHHHhhh--heeecCCCcchhHHHHHHHHHHhc---------CCCceEEecCccccchhhhHHhHH
Confidence 555 78999998888888885 889999999999999999877654 45577788887787542
Q ss_pred ------------------------------hhhhHH-HHHHHhcC---cceecccceEEEEEcccchhc
Q 042373 212 ------------------------------VRRGRM-IDLLCKNG---VKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 212 ------------------------------~TPgrl-~dll~~~~---~~~~~l~~l~~lVlDEaD~ml 246 (494)
+|...+ .|+|..+- ......+.+.+.|+||+|.|+
T Consensus 145 y~~lGlsvg~~~~~~~~~~r~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsil 213 (273)
T d1tf5a3 145 FEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 213 (273)
T ss_dssp HHHTTCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred HHHcCCCccccccccCHHHHHHHhhCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhh
Confidence 233322 24444321 112235678999999999977
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=96.45 E-value=0.0011 Score=62.28 Aligned_cols=62 Identities=16% Similarity=0.041 Sum_probs=43.9
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
+++|-|.+++-. ....+++.|+.|||||.+.+.-+...+.... . ...++||+++|+.+|..+
T Consensus 1 ~L~~eQ~~av~~--~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~-~----~~~~ILvlt~tn~a~~~i 62 (306)
T d1uaaa1 1 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-Y----QARHIAAVTFTNKAAREM 62 (306)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-C----CGGGEEEEESSHHHHHHH
T ss_pred CcCHHHHHHHhC--CCCCEEEEeeCCccHHHHHHHHHHHHHHhcC-C----ChhHEEEEeCcHHHHHHH
Confidence 478999999954 3456999999999999875544433332211 1 123699999999999875
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.17 E-value=0.0044 Score=56.26 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=47.3
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh---hhhHHHHHHHhcCcceecccceEE
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV---RRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~---TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
.++++|++|+|||-. +..+.+.+... +..++++ +...+..+.. ..+.+.++.. .+..+++
T Consensus 38 ~l~l~G~~G~GKTHL-l~A~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~dl 100 (213)
T d1l8qa2 38 PIFIYGSVGTGKTHL-LQAAGNEAKKR--------GYRVIYS-SADDFAQAMVEHLKKGTINEFRN-------MYKSVDL 100 (213)
T ss_dssp SEEEECSSSSSHHHH-HHHHHHHHHHT--------TCCEEEE-EHHHHHHHHHHHHHHTCHHHHHH-------HHHTCSE
T ss_pred cEEEECCCCCcHHHH-HHHHHHHhccC--------ccceEEe-chHHHHHHHHHHHHccchhhHHH-------HHhhccc
Confidence 489999999999952 22344444432 3444444 4545444331 1111112221 2557889
Q ss_pred EEEcccchhcccC-ChhHHHHHHHhh
Q 042373 237 LVLDEADRMFDMG-FEPQITRIVQNI 261 (494)
Q Consensus 237 lVlDEaD~ml~~g-f~~~i~~Il~~l 261 (494)
|++|++|.+.... ....+..++..+
T Consensus 101 l~iDDi~~i~~~~~~~~~lf~lin~~ 126 (213)
T d1l8qa2 101 LLLDDVQFLSGKERTQIEFFHIFNTL 126 (213)
T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcCchHHHHHHHHHHHHH
Confidence 9999999987432 233455555554
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.92 E-value=0.022 Score=52.73 Aligned_cols=108 Identities=14% Similarity=0.075 Sum_probs=56.0
Q ss_pred CCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHH--HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCC
Q 042373 119 PIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALI--ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSP 196 (494)
Q Consensus 119 pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~i--l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p 196 (494)
|=.+|++++-.+.+.+.|++. . .+ ..+.+.+..+ -..+.+|+.||+|+|||+.. -.+.+-. +-
T Consensus 4 p~~~~~di~G~~~~k~~l~~~-i-~~-l~~~~~~~~~g~~~~~giLl~GppGtGKT~la--~aia~~~----------~~ 68 (247)
T d1ixza_ 4 PKVTFKDVAGAEEAKEELKEI-V-EF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA--RAVAGEA----------RV 68 (247)
T ss_dssp CSCCGGGCCSCHHHHHHHHHH-H-HH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH--HHHHHHT----------TC
T ss_pred CCCcHHHHccHHHHHHHHHHH-H-HH-HHCHHHHHHcCCCCCceEEEecCCCCChhHHH--HHHHHHc----------CC
Confidence 336899997777766666431 0 00 0001111111 01256999999999999732 2222211 33
Q ss_pred eEEEEccchhHHHh-h-hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 197 VGLVMAPTGELVRQ-Q-VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 197 ~aLIl~PTreLa~Q-i-~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
..+.+.++ .|... + .|..++..++..-. -..=.+|++||+|.++.
T Consensus 69 ~~~~i~~~-~l~~~~~g~~~~~l~~~f~~a~-----~~~p~Ii~iDeid~l~~ 115 (247)
T d1ixza_ 69 PFITASGS-DFVEMFVGVGAARVRDLFETAK-----RHAPCIVFIDEIDAVGR 115 (247)
T ss_dssp CEEEEEHH-HHHHSCTTHHHHHHHHHHHHHT-----TSSSEEEEEETHHHHHC
T ss_pred CEEEEEhH-HhhhccccHHHHHHHHHHHHHH-----HcCCEEEEEEChhhhCc
Confidence 44555444 33332 2 24445555554321 11224899999999874
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.76 E-value=0.013 Score=52.58 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=30.6
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCC--CEEEEcCCCCCchhhhHHHHHHHH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGL--DSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~gr--dvi~~a~TGSGKTlafllpil~~l 183 (494)
++|+++-.++.+++.|+.. +.+++ ++|++||+|+|||....+ +++.+
T Consensus 11 ~~~~divg~~~~~~~L~~~---------------i~~~~~~~lLl~Gp~G~GKttl~~~-la~~l 59 (227)
T d1sxjc2 11 ETLDEVYGQNEVITTVRKF---------------VDEGKLPHLLFYGPPGTGKTSTIVA-LAREI 59 (227)
T ss_dssp SSGGGCCSCHHHHHHHHHH---------------HHTTCCCCEEEECSSSSSHHHHHHH-HHHHH
T ss_pred CCHHHccCcHHHHHHHHHH---------------HHcCCCCeEEEECCCCCChhHHHHH-HHHHh
Confidence 5677777777777777542 12222 589999999999954332 34444
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.58 E-value=0.0082 Score=54.58 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=33.7
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHI 183 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l 183 (494)
++|+++-.++.+.+.|+.+ +... .....+++.||.|+|||... ..+.+.+
T Consensus 8 ~~~~diig~~~~~~~L~~~-~~~~-----------~~~~~lll~Gp~G~GKTt~~-~~la~~l 57 (252)
T d1sxje2 8 KSLNALSHNEELTNFLKSL-SDQP-----------RDLPHLLLYGPNGTGKKTRC-MALLESI 57 (252)
T ss_dssp CSGGGCCSCHHHHHHHHTT-TTCT-----------TCCCCEEEECSTTSSHHHHH-HTHHHHH
T ss_pred CCHHHccCcHHHHHHHHHH-HHcC-----------CCCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 4688888899999988764 2111 01235999999999999644 3445554
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=95.45 E-value=0.01 Score=55.97 Aligned_cols=62 Identities=19% Similarity=0.077 Sum_probs=45.5
Q ss_pred CCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh
Q 042373 143 NPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ 211 (494)
Q Consensus 143 ~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi 211 (494)
.+++-|.+++-. .+..++|.|+.|||||.+.+--+...+... ... .-++|++++|+.++..+
T Consensus 11 ~L~~eQ~~~v~~--~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~-~~~----p~~il~lt~t~~aa~~~ 72 (318)
T d1pjra1 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK-HVA----PWNILAITFTNKAAREM 72 (318)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTT-CCC----GGGEEEEESSHHHHHHH
T ss_pred hCCHHHHHHHhC--CCCCEEEEecCCccHHHHHHHHHHHHHHcC-CCC----HHHeEeEeccHHHHHHH
Confidence 478999999874 355799999999999987655554444332 111 23699999999999876
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.014 Score=52.45 Aligned_cols=121 Identities=12% Similarity=0.099 Sum_probs=58.8
Q ss_pred CChhHHHHHHHHH----cCC---CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCC-------------CCCCeEEEEcc
Q 042373 144 PVAIQAPASALII----SGL---DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPG-------------DDSPVGLVMAP 203 (494)
Q Consensus 144 ptpiQ~~aip~il----~gr---dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~-------------~~~p~aLIl~P 203 (494)
.+|+|..++..+. +++ -+|++||.|+|||.... -+...++........ ...+...++.+
T Consensus 3 ~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~-~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 81 (207)
T d1a5ta2 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAP 81 (207)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECC
T ss_pred CCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHH-HHHHhcccccccccccccccchhhhhhhccccccchhhh
Confidence 3578877776553 443 48999999999997443 344555432211100 01334455544
Q ss_pred chhHHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEE
Q 042373 204 TGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVL 269 (494)
Q Consensus 204 TreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~il 269 (494)
...--. ..-..+..+...-. ........+++|+||+|.|.... ...+.++++.-+....+++
T Consensus 82 ~~~~~~--i~~~~ir~l~~~~~-~~~~~~~~kviIide~d~l~~~a-~n~Llk~lEep~~~~~fIl 143 (207)
T d1a5ta2 82 EKGKNT--LGVDAVREVTEKLN-EHARLGGAKVVWVTDAALLTDAA-ANALLKTLEEPPAETWFFL 143 (207)
T ss_dssp CTTCSS--BCHHHHHHHHHHTT-SCCTTSSCEEEEESCGGGBCHHH-HHHHHHHHTSCCTTEEEEE
T ss_pred hhcccc--cccchhhHHhhhhh-hccccCccceEEechhhhhhhhh-hHHHHHHHHhhcccceeee
Confidence 321100 00011222222211 11124567899999999987432 2334444444333333333
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.077 Score=48.06 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=33.9
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC---CCEEEEcCCCCCchhhhHHHHHHHHHc
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG---LDSVAITETGSGKTLAFLLPMLRHIWE 185 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g---rdvi~~a~TGSGKTlafllpil~~l~~ 185 (494)
++|+++-.++.+.+.|... +.++ +.+|++||+|+|||.+.. -+...+..
T Consensus 9 ~~~~dlig~~~~~~~L~~~---------------i~~~~~~~~~Ll~Gp~G~GKtt~a~-~~~~~l~~ 60 (239)
T d1njfa_ 9 QTFADVVGQEHVLTALANG---------------LSLGRIHHAYLFSGTRGVGKTSIAR-LLAKGLNC 60 (239)
T ss_dssp SSGGGSCSCHHHHHHHHHH---------------HHTTCCCSEEEEECSTTSSHHHHHH-HHHHHHHC
T ss_pred CCHHHccChHHHHHHHHHH---------------HHcCCCCeeEEEECCCCCcHHHHHH-HHHHHhcC
Confidence 5788888888888877542 2223 348999999999997544 45555554
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.13 E-value=0.018 Score=51.70 Aligned_cols=127 Identities=12% Similarity=0.111 Sum_probs=61.0
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeE
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVG 198 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~a 198 (494)
++|+++=.++.+++.|+.. +..+ .++|++||+|+|||.+.-+ +.+.+..... ....
T Consensus 12 ~~~~d~ig~~~~~~~L~~~---------------~~~~~~~~~ll~Gp~G~GKTt~a~~-la~~l~~~~~------~~~~ 69 (224)
T d1sxjb2 12 QVLSDIVGNKETIDRLQQI---------------AKDGNMPHMIISGMPGIGKTTSVHC-LAHELLGRSY------ADGV 69 (224)
T ss_dssp SSGGGCCSCTHHHHHHHHH---------------HHSCCCCCEEEECSTTSSHHHHHHH-HHHHHHGGGH------HHHE
T ss_pred CCHHHhcCCHHHHHHHHHH---------------HHcCCCCeEEEECCCCCCchhhHHH-HHHHHhcccc------cccc
Confidence 4566665666666666532 1223 2689999999999975433 2333321100 1112
Q ss_pred EEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecCC
Q 042373 199 LVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSPT 273 (494)
Q Consensus 199 LIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSAT 273 (494)
+.+.....-.... .-..+..+.... ......+.+++|+||+|.|.... ...+...+...+....+++.+..
T Consensus 70 ~~~n~~~~~~~~~-i~~~~~~~~~~~--~~~~~~~~kviiiDe~d~~~~~~-~~~ll~~~e~~~~~~~~i~~~~~ 140 (224)
T d1sxjb2 70 LELNASDDRGIDV-VRNQIKHFAQKK--LHLPPGKHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFACNQ 140 (224)
T ss_dssp EEECTTSCCSHHH-HHTHHHHHHHBC--CCCCTTCCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEESC
T ss_pred ccccccccCCcee-hhhHHHHHHHhh--ccCCCcceEEEEEecccccchhH-HHHHhhhccccccceeeeeccCc
Confidence 2222221111000 011122223221 12334567899999999988542 22333344444444455554443
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.12 E-value=0.016 Score=54.01 Aligned_cols=107 Identities=16% Similarity=0.130 Sum_probs=56.6
Q ss_pred CCCcccCCCCHHHHHHHHhC--CCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCe
Q 042373 120 IKTWRQTGLTTKILETFSKL--NHENPVAIQAPASALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPV 197 (494)
Q Consensus 120 i~~f~~l~L~~~ll~~l~~~--g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~ 197 (494)
-.+|++++-.+.+.+.|.+. -+..|..+|... +-..+.+++++|+|||||+.. -.+.+-. +..
T Consensus 8 ~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g---~~~~~~iLL~GppGtGKT~la--~~iA~~~----------~~~ 72 (256)
T d1lv7a_ 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA--KAIAGEA----------KVP 72 (256)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH--HHHHHHH----------TCC
T ss_pred CCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcC---CCCCCeEEeeCCCCCCccHHH--HHHHHHc----------CCC
Confidence 35799988777777666431 022222222211 112377999999999999742 2333322 222
Q ss_pred EEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEEEEEcccchhcc
Q 042373 198 GLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMFD 247 (494)
Q Consensus 198 aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml~ 247 (494)
.+.+.+ ..|.... .|+.++..++..- .-..=.+|++||+|.++.
T Consensus 73 ~~~i~~-~~l~~~~~g~~~~~l~~~f~~A-----~~~~P~il~iDeiD~l~~ 118 (256)
T d1lv7a_ 73 FFTISG-SDFVEMFVGVGASRVRDMFEQA-----KKAAPCIIFIDEIDAVGR 118 (256)
T ss_dssp EEEECS-CSSTTSCCCCCHHHHHHHHHHH-----HTTCSEEEEETTHHHHTC
T ss_pred EEEEEh-HHhhhcchhHHHHHHHHHHHHH-----HHcCCEEEEEEChhhhCc
Confidence 344333 3333221 3455555555431 112335788999999874
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.99 E-value=0.042 Score=48.94 Aligned_cols=111 Identities=18% Similarity=0.172 Sum_probs=64.7
Q ss_pred HHHHHHHHHc---CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH--HHhhhhhhHHHHHHH
Q 042373 148 QAPASALIIS---GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL--VRQQVRRGRMIDLLC 222 (494)
Q Consensus 148 Q~~aip~il~---grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL--a~Qi~TPgrl~dll~ 222 (494)
|.+.+..+.. +..++++++.|+|||..... +...+.... ...|-.+++.|...- ..|+ ..+.+.+.
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~-l~~~i~~~~-----~~h~D~~~i~~~~~~I~Id~I---R~i~~~~~ 72 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLE-LPEYVEKFP-----PKASDVLEIDPEGENIGIDDI---RTIKDFLN 72 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHH-HHHHHHTSC-----CCTTTEEEECCSSSCBCHHHH---HHHHHHHT
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHH-HHHHHhccc-----cCCCCEEEEeCCcCCCCHHHH---HHHHHHHh
Confidence 5555555553 35899999999999965443 334443221 126778999885321 2222 12444444
Q ss_pred hcCcceecccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEecC
Q 042373 223 KNGVKITNLTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFSP 272 (494)
Q Consensus 223 ~~~~~~~~l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfSA 272 (494)
... .....+++|+||||+|-... ...+.++++.-+....+++.+.
T Consensus 73 ~~~----~~~~~KviIId~ad~l~~~a-qNaLLK~LEEPp~~t~fiLit~ 117 (198)
T d2gnoa2 73 YSP----ELYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNTR 117 (198)
T ss_dssp SCC----SSSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEES
T ss_pred hCc----ccCCCEEEEEeCccccchhh-hhHHHHHHhCCCCCceeeeccC
Confidence 321 24567899999999997432 3344455554455556665544
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.63 E-value=0.059 Score=49.53 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=37.7
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhh-hhHHHHHHHhcCcceecccceEEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVR-RGRMIDLLCKNGVKITNLTRVTYL 237 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~T-Pgrl~dll~~~~~~~~~l~~l~~l 237 (494)
+.+|++||+|+|||...- .+..-.. .|..-+-+|..-....-.+ ...+..++... .-..-.+|
T Consensus 41 ~~vLL~GppGtGKT~la~--alA~~~~---------~~~~~i~~~~~~~g~~~~~~~~~i~~if~~A-----~~~~p~il 104 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAA--KIAEESN---------FPFIKICSPDKMIGFSETAKCQAMKKIFDDA-----YKSQLSCV 104 (246)
T ss_dssp EEEEEECSTTSSHHHHHH--HHHHHHT---------CSEEEEECGGGCTTCCHHHHHHHHHHHHHHH-----HTSSEEEE
T ss_pred eEEEEECcCCCCHHHHHH--HHhhccc---------ccccccccccccccccccchhhhhhhhhhhh-----hhccccee
Confidence 469999999999997432 2222221 3344444443111100011 12233343321 11233689
Q ss_pred EEcccchhccc
Q 042373 238 VLDEADRMFDM 248 (494)
Q Consensus 238 VlDEaD~ml~~ 248 (494)
++||+|.++..
T Consensus 105 ~iDEid~l~~~ 115 (246)
T d1d2na_ 105 VVDDIERLLDY 115 (246)
T ss_dssp EECCHHHHTTC
T ss_pred ehhhhhhHhhh
Confidence 99999998753
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.25 E-value=0.027 Score=54.25 Aligned_cols=66 Identities=23% Similarity=0.188 Sum_probs=38.0
Q ss_pred HHHHhCCCCCC---ChhHHHH-HHHHHcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHH
Q 042373 134 ETFSKLNHENP---VAIQAPA-SALIISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVR 209 (494)
Q Consensus 134 ~~l~~~g~~~p---tpiQ~~a-ip~il~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~ 209 (494)
..+...|+-.. .+-+... ..++..+++++++++||||||.. +-.++..+-. .-+.+++--+.||..
T Consensus 138 ~~l~~~g~~~~~~~~~~~~~~l~~~v~~~~nili~G~tgSGKTT~-l~al~~~i~~---------~~rivtiEd~~El~l 207 (323)
T d1g6oa_ 138 SFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTY-IKSIMEFIPK---------EERIISIEDTEEIVF 207 (323)
T ss_dssp HHHHHTTTTTTCSSHHHHHHHHHHHHHHTCCEEEEESTTSSHHHH-HHHHGGGSCT---------TCCEEEEESSCCCCC
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHhCCCEEEEeeccccchHH-HHHHhhhccc---------ccceeeccchhhhhc
Confidence 34455555432 2333333 33455779999999999999963 3334333211 335666667777643
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.89 E-value=0.13 Score=46.32 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=59.1
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccch-hHH-Hhh--------------hhhhHHHHHHHhc
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTG-ELV-RQQ--------------VRRGRMIDLLCKN 224 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTr-eLa-~Qi--------------~TPgrl~dll~~~ 224 (494)
+++++|||+|||.+-.= +-.++..+. ...+||-+-|. .=+ .|. .++..+...+...
T Consensus 15 i~lvGptGvGKTTTiAK-LA~~~~~~g-------~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a 86 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGK-LAYFYKKKG-------FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRG 86 (211)
T ss_dssp EEEECSCCC----HHHH-HHHHHHHTT-------CCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH-HHHHHHHCC-------CceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHH
Confidence 55689999999975432 223333221 34677777653 333 333 1233333322211
Q ss_pred CcceecccceEEEEEcccchhccc---CChhHHHHHHHhhcCCCcEEEecCCCChHHHHHH
Q 042373 225 GVKITNLTRVTYLVLDEADRMFDM---GFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 225 ~~~~~~l~~l~~lVlDEaD~ml~~---gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~ 282 (494)
.........+++++|=+-+.-.. ....++..+...+++..-.+.++|+...+....+
T Consensus 87 -~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~ 146 (211)
T d1j8yf2 87 -VEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLA 146 (211)
T ss_dssp -HHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH
T ss_pred -HHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHH
Confidence 00112456789999998764321 1234566777777777777888998866554433
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.87 E-value=0.054 Score=48.68 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=38.7
Q ss_pred ccceEEEEEcccchhccc-CChhHHHHHHHhhcCCCcEEEecCCCChHHHHHHHh
Q 042373 231 LTRVTYLVLDEADRMFDM-GFEPQITRIVQNIRPDRQAVLFSPTFPPRVEILARK 284 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~-gf~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~~~ 284 (494)
++..+++++|=+-+.... ....++..+.+.+.+..-+++++|+........+..
T Consensus 90 ~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~ 144 (207)
T d1ls1a2 90 LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA 144 (207)
T ss_dssp HHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHH
T ss_pred hccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHH
Confidence 567789999999876532 234556666777777777888999988877666643
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.078 Score=49.55 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=48.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh---hhhhHHHHHHHhcCcceecccceE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ---VRRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi---~TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
+|++++|+.|.|||.. +--+.+.+....- .....+...+.+.+.+=++-.. ..-.|+..++..-. ...+ -
T Consensus 40 ~n~lLVG~~GvGKTal-v~~la~ri~~~~v-p~~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~----~~~~-i 112 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAI-AEGLAWRIVQGDV-PEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE----QDTN-S 112 (268)
T ss_dssp CEEEEECCTTSSHHHH-HHHHHHHHHHTCS-CGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHS----SSSC-E
T ss_pred CCcEEECCCCCcHHHH-HHHHHHHHHhCCc-ccccccceeEEeeechHhccCccchhHHHHHHHHHHHhh----ccCC-c
Confidence 5899999999999953 3334444443221 1111133445554444443221 12234444444311 1122 3
Q ss_pred EEEEcccchhcccCC----hhHHHHHHH
Q 042373 236 YLVLDEADRMFDMGF----EPQITRIVQ 259 (494)
Q Consensus 236 ~lVlDEaD~ml~~gf----~~~i~~Il~ 259 (494)
++++||+|.|+..|. ...+..+++
T Consensus 113 IlfiDeih~l~~~g~~~g~~~d~a~~Lk 140 (268)
T d1r6bx2 113 ILFIDEIHTIIGAGAASGGQVDAANLIK 140 (268)
T ss_dssp EEEETTTTTTTTSCCSSSCHHHHHHHHS
T ss_pred eEEecchHHHhcCCCCCCccccHHHHhh
Confidence 788999999987653 234555554
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.71 E-value=0.11 Score=46.41 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=28.3
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchhhhH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTLAFL 176 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTlafl 176 (494)
++|+++-.++.+.+.|... ++. -.-.++|++||+|+|||.+.-
T Consensus 21 ~~~~diig~~~~~~~l~~~-------i~~------~~~~~lll~Gp~G~GKTtla~ 63 (231)
T d1iqpa2 21 QRLDDIVGQEHIVKRLKHY-------VKT------GSMPHLLFAGPPGVGKTTAAL 63 (231)
T ss_dssp CSTTTCCSCHHHHHHHHHH-------HHH------TCCCEEEEESCTTSSHHHHHH
T ss_pred CCHHHccCcHHHHHHHHHH-------HHc------CCCCeEEEECCCCCcHHHHHH
Confidence 3677777777777776542 000 012469999999999996543
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=93.65 E-value=0.078 Score=44.84 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=23.5
Q ss_pred ccceEEEEEcccchhcccCChhHHHHHHHhhcCCCcEEEec
Q 042373 231 LTRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQAVLFS 271 (494)
Q Consensus 231 l~~l~~lVlDEaD~ml~~gf~~~i~~Il~~l~~~~Q~ilfS 271 (494)
..+.+++++||++...... ...+..+.+.+.....+++++
T Consensus 97 ~~~~~vlllDE~~~~~~~~-~~~~~~l~~~l~~~~~~il~~ 136 (178)
T d1ye8a1 97 KDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVAT 136 (178)
T ss_dssp HCTTCEEEECCCSTTGGGC-HHHHHHHHHHHTCTTSEEEEE
T ss_pred hcCCCceeecCCCccchhh-HHHHHHHHHHhccCCCEEEEE
Confidence 4567899999987655432 334444455554444555543
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.61 E-value=0.079 Score=49.12 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=40.9
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh-h-hhhhHHHHHHHhcCcceecccceE
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ-Q-VRRGRMIDLLCKNGVKITNLTRVT 235 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q-i-~TPgrl~dll~~~~~~~~~l~~l~ 235 (494)
.+.+|++||+|+|||+.. -.+...+ +...+.+.+ -.++.. . .+...+..++..- ....=.
T Consensus 41 ~~giLL~Gp~GtGKT~l~-~ala~~~-----------~~~~~~~~~-~~l~~~~~~~~~~~l~~~f~~A-----~~~~p~ 102 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLA-KAIANEC-----------QANFISIKG-PELLTMWFGESEANVREIFDKA-----RQAAPC 102 (265)
T ss_dssp CCEEEEBCCTTSSHHHHH-HHHHHHT-----------TCEEEEECH-HHHHTSCTTTHHHHHHHHHHHH-----HHTCSE
T ss_pred CCeEEEECCCCCcchhHH-HHHHHHh-----------CCcEEEEEH-HHhhhccccchHHHHHHHHHHH-----HhcCCc
Confidence 367999999999999632 1222221 334444443 333322 2 3445555555431 122337
Q ss_pred EEEEcccchhcc
Q 042373 236 YLVLDEADRMFD 247 (494)
Q Consensus 236 ~lVlDEaD~ml~ 247 (494)
+|++||+|.++.
T Consensus 103 il~ideid~l~~ 114 (265)
T d1r7ra3 103 VLFFDELDSIAK 114 (265)
T ss_dssp EEEESSGGGTCC
T ss_pred ceeHHhhhhccc
Confidence 899999999884
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.49 E-value=0.087 Score=47.45 Aligned_cols=113 Identities=16% Similarity=0.181 Sum_probs=61.8
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc-hhHHH-hh--------------hhhhHHHHHHHhc
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT-GELVR-QQ--------------VRRGRMIDLLCKN 224 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT-reLa~-Qi--------------~TPgrl~dll~~~ 224 (494)
+++++|||+|||.+-.= +-.++..+ +...+||-+-| |.=|. |. -++..+..++...
T Consensus 12 i~lvGptGvGKTTTiAK-LA~~~~~~-------g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~ 83 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGK-LARQFEQQ-------GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDA 83 (211)
T ss_dssp EEEECCTTSCHHHHHHH-HHHHHHTT-------TCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH-HHHHHHHC-------CCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHH
Confidence 45689999999976442 22333322 13456666666 44333 33 2333333333321
Q ss_pred CcceecccceEEEEEcccchhccc-CChhHHHHHHHhhc------CCCcEEEecCCCChHHHHHH
Q 042373 225 GVKITNLTRVTYLVLDEADRMFDM-GFEPQITRIVQNIR------PDRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 225 ~~~~~~l~~l~~lVlDEaD~ml~~-gf~~~i~~Il~~l~------~~~Q~ilfSAT~~~~v~~l~ 282 (494)
. .....+..+++++|=+-|+-.. ....++..+.+.++ +..-++.++|+........+
T Consensus 84 ~-~~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~ 147 (211)
T d2qy9a2 84 I-QAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA 147 (211)
T ss_dssp H-HHHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHH
T ss_pred H-HHHHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHH
Confidence 0 0112456789999999875432 23345555555553 34456778898876554433
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.34 E-value=0.055 Score=49.99 Aligned_cols=71 Identities=11% Similarity=0.127 Sum_probs=39.0
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh--hhhhHHHHHHHhcCcceecccceEE
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ--VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi--~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
+.+|+.+|+|||||+. .-.+.+-. +-..+++.++. +.... .+...+..++... ....-.+
T Consensus 39 ~giLL~GppGtGKT~l--~~ala~~~----------~~~~~~i~~~~-l~~~~~g~~~~~l~~~f~~A-----~~~~p~i 100 (258)
T d1e32a2 39 RGILLYGPPGTGKTLI--ARAVANET----------GAFFFLINGPE-IMSKLAGESESNLRKAFEEA-----EKNAPAI 100 (258)
T ss_dssp CEEEEECCTTSSHHHH--HHHHHHHT----------TCEEEEECHHH-HTTSCTTHHHHHHHHHHHHH-----HHTCSEE
T ss_pred ceeEEecCCCCCchHH--HHHHHHHh----------CCeEEEEEchh-hcccccccHHHHHHHHHHHH-----HhcCCeE
Confidence 6799999999999973 22222211 33445554433 33322 1223333333221 1223468
Q ss_pred EEEcccchhcc
Q 042373 237 LVLDEADRMFD 247 (494)
Q Consensus 237 lVlDEaD~ml~ 247 (494)
|++||+|.++.
T Consensus 101 l~iDeid~l~~ 111 (258)
T d1e32a2 101 IFIDELDAIAP 111 (258)
T ss_dssp EEESSGGGTCC
T ss_pred EEehhhhhhcc
Confidence 99999999874
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.06 E-value=0.11 Score=49.08 Aligned_cols=19 Identities=32% Similarity=0.286 Sum_probs=16.5
Q ss_pred cCCCEEEEcCCCCCchhhh
Q 042373 157 SGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlaf 175 (494)
..+.+++++|||+|||+..
T Consensus 48 ~~~~iLl~GPpG~GKT~lA 66 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIA 66 (309)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4689999999999999754
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.30 E-value=0.12 Score=45.97 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=13.3
Q ss_pred CEEEEcCCCCCchhh
Q 042373 160 DSVAITETGSGKTLA 174 (494)
Q Consensus 160 dvi~~a~TGSGKTla 174 (494)
+++++||+|+|||..
T Consensus 35 ~lll~Gp~G~GKTtl 49 (237)
T d1sxjd2 35 HMLFYGPPGTGKTST 49 (237)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEECCCCCChHHH
Confidence 589999999999964
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.18 E-value=0.12 Score=46.45 Aligned_cols=53 Identities=13% Similarity=-0.064 Sum_probs=29.5
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHH-HHHH-----HHcCCCEEEEcCCCCCchhhh
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAP-ASAL-----IISGLDSVAITETGSGKTLAF 175 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~-aip~-----il~grdvi~~a~TGSGKTlaf 175 (494)
++|+++-.++..++.|+.. +.. ...... .++. ....+.++++||+|+|||.+.
T Consensus 11 ~~~~dlig~~~~~~~L~~~-l~~-~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a 69 (253)
T d1sxja2 11 TNLQQVCGNKGSVMKLKNW-LAN-WENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA 69 (253)
T ss_dssp SSGGGCCSCHHHHHHHHHH-HHT-HHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHH-HHh-hhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHH
Confidence 4688888888887777542 000 000000 0000 001246999999999999643
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.16 E-value=0.25 Score=44.04 Aligned_cols=44 Identities=14% Similarity=-0.020 Sum_probs=28.4
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHc----CCCEEEEcCCCCCchhhhH
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIIS----GLDSVAITETGSGKTLAFL 176 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~----grdvi~~a~TGSGKTlafl 176 (494)
++|+++--.+.+.+.|+.. +..... -.++|++||+|+|||...-
T Consensus 6 ~~~ddivGq~~~~~~L~~~------------i~~~~~~~~~~~~~Ll~GPpG~GKTtla~ 53 (239)
T d1ixsb2 6 KTLDEYIGQERLKQKLRVY------------LEAAKARKEPLEHLLLFGPPGLGKTTLAH 53 (239)
T ss_dssp CSGGGSCSCHHHHHHHHHH------------HHHHTTSSSCCCCEEEECCTTSCHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHH------------HHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 3688876667776666432 111111 2579999999999997543
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.05 E-value=0.12 Score=46.28 Aligned_cols=91 Identities=20% Similarity=0.164 Sum_probs=50.1
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC---CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCe
Q 042373 121 KTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG---LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPV 197 (494)
Q Consensus 121 ~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g---rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~ 197 (494)
.+|+++--.+.+++.|+.. . + -....+ .++|++||+|+|||.+.-+ +...+ +..
T Consensus 6 ~~~~divGqe~~~~~l~~~-i------~----~~~~~~~~~~~~L~~GPpGtGKT~lA~~-la~~~-----------~~~ 62 (238)
T d1in4a2 6 KSLDEFIGQENVKKKLSLA-L------E----AAKMRGEVLDHVLLAGPPGLGKTTLAHI-IASEL-----------QTN 62 (238)
T ss_dssp SSGGGCCSCHHHHHHHHHH-H------H----HHHHHTCCCCCEEEESSTTSSHHHHHHH-HHHHH-----------TCC
T ss_pred CcHHHcCChHHHHHHHHHH-H------H----HHHhcCCCCCeEEEECCCCCcHHHHHHH-HHhcc-----------CCC
Confidence 4688887777777666532 0 0 011122 4799999999999975433 33333 212
Q ss_pred EEEEccchhHHHhhhhhhHHHHHHHhcCcceecccceEEEEEcccchhc
Q 042373 198 GLVMAPTGELVRQQVRRGRMIDLLCKNGVKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 198 aLIl~PTreLa~Qi~TPgrl~dll~~~~~~~~~l~~l~~lVlDEaD~ml 246 (494)
.+++..+.. .+++.+...+.... .-..+++||+|++.
T Consensus 63 ~~~~~~~~~-----~~~~~~~~~~~~~~-------~~~~~~ide~~~~~ 99 (238)
T d1in4a2 63 IHVTSGPVL-----VKQGDMAAILTSLE-------RGDVLFIDEIHRLN 99 (238)
T ss_dssp EEEEETTTC-----CSHHHHHHHHHHCC-------TTCEEEEETGGGCC
T ss_pred cccccCccc-----ccHHHHHHHHHhhc-------cCCchHHHHHHHhh
Confidence 333332211 23344444454321 22467899999875
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.99 E-value=0.24 Score=44.39 Aligned_cols=65 Identities=11% Similarity=0.206 Sum_probs=39.1
Q ss_pred Ecccchhccc---CChhHHHHHHHhhcCCCcEEEecCCCCh--HHHHHHHh-----------------------cCCccc
Q 042373 239 LDEADRMFDM---GFEPQITRIVQNIRPDRQAVLFSPTFPP--RVEILARK-----------------------TNVCNL 290 (494)
Q Consensus 239 lDEaD~ml~~---gf~~~i~~Il~~l~~~~Q~ilfSAT~~~--~v~~l~~~-----------------------~g~~~I 290 (494)
.|..|.++.. .|...+..|.......+.+++.+.++-. .+..+..+ ...-.|
T Consensus 6 ~D~~D~Vy~T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~herEAeIIAqAG~~GaV 85 (219)
T d1nkta4 6 EDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRGGV 85 (219)
T ss_dssp EECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTTCE
T ss_pred cCCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhHHHHHHHHHhcccCCcE
Confidence 4566666632 1334455555555567777777776532 22222222 334568
Q ss_pred eeeccccccCCCC
Q 042373 291 SIANSVRARGLDE 303 (494)
Q Consensus 291 LVaTdv~~rGlDi 303 (494)
-|||+.|.||-||
T Consensus 86 TIATNMAGRGTDI 98 (219)
T d1nkta4 86 TVATNMAGRGTDI 98 (219)
T ss_dssp EEEETTCSTTCCC
T ss_pred EeeccccCCCCce
Confidence 8999999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=91.66 E-value=0.16 Score=45.41 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=59.1
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc-hhHH-HhhhhhhH--------------HHHHHH
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT-GELV-RQQVRRGR--------------MIDLLC 222 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT-reLa-~Qi~TPgr--------------l~dll~ 222 (494)
+=+++++|||+|||.+-.= +-.++... + ...+||-+-| |.=| .|..+-++ +...+.
T Consensus 7 ~vi~lvGptGvGKTTTiaK-LA~~~~~~-----g--~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~ 78 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAK-LGRYYQNL-----G--KKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAY 78 (207)
T ss_dssp SEEEEECSTTSSHHHHHHH-HHHHHHTT-----T--CCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH-HHHHHHHC-----C--CcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHH
Confidence 4467899999999976432 22333221 1 3355666665 4444 33322211 222221
Q ss_pred hcCcceecccceEEEEEcccchhccc-CChhHHHHHHHhh------cCCCcEEEecCCCChHHHHHH
Q 042373 223 KNGVKITNLTRVTYLVLDEADRMFDM-GFEPQITRIVQNI------RPDRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 223 ~~~~~~~~l~~l~~lVlDEaD~ml~~-gf~~~i~~Il~~l------~~~~Q~ilfSAT~~~~v~~l~ 282 (494)
.. ......++.++|++|=+-++... ....++..+.+.+ .+..-++.++||...+....+
T Consensus 79 ~~-~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~ 144 (207)
T d1okkd2 79 DA-VQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQA 144 (207)
T ss_dssp HH-HHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHH
T ss_pred HH-HHHHHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHH
Confidence 10 00112456789999999876532 1223344444333 234456778898876544333
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.29 E-value=0.16 Score=45.61 Aligned_cols=110 Identities=14% Similarity=0.135 Sum_probs=58.0
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhH-HH-hhhh--------------hhHHHHHHHhc
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGEL-VR-QQVR--------------RGRMIDLLCKN 224 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreL-a~-Qi~T--------------Pgrl~dll~~~ 224 (494)
+++++|||+|||..-.= +..++..+. ...+||-+-|.-. |. |.-+ +..+...+...
T Consensus 14 i~lvGptGvGKTTTiAK-LAa~~~~~~-------~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~ 85 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGK-LAKMFVDEG-------KSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 85 (213)
T ss_dssp EEEECCTTSSHHHHHHH-HHHHHHHTT-------CCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH-HHHHHHHCC-------CceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHH
Confidence 56689999999976432 223333321 4467777776433 32 3311 11111111110
Q ss_pred CcceecccceEEEEEcccchhccc-CChhHHHHHHHhhc------CCCcEEEecCCCChHHH
Q 042373 225 GVKITNLTRVTYLVLDEADRMFDM-GFEPQITRIVQNIR------PDRQAVLFSPTFPPRVE 279 (494)
Q Consensus 225 ~~~~~~l~~l~~lVlDEaD~ml~~-gf~~~i~~Il~~l~------~~~Q~ilfSAT~~~~v~ 279 (494)
......++.++|++|=+-+.... ....++..+...+. +...++.++||......
T Consensus 86 -~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~ 146 (213)
T d1vmaa2 86 -VAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGL 146 (213)
T ss_dssp -HHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHH
T ss_pred -HHHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchh
Confidence 00112456789999999875432 12334555555443 34457788998766543
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=91.27 E-value=0.12 Score=51.24 Aligned_cols=58 Identities=26% Similarity=0.358 Sum_probs=42.9
Q ss_pred CCChhHHHHHHHHHcC-----CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhh
Q 042373 143 NPVAIQAPASALIISG-----LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQV 212 (494)
Q Consensus 143 ~ptpiQ~~aip~il~g-----rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~ 212 (494)
.|+--|=+||..+..| ++.++.|-||||||+... -++... +..+|||+|+..+|.|++
T Consensus 11 ~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA-~l~~~~-----------~rp~LVVt~n~~~A~qL~ 73 (413)
T d1t5la1 11 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTIS-NVIAQV-----------NKPTLVIAHNKTLAGQLY 73 (413)
T ss_dssp CCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHH-HHHHHH-----------TCCEEEECSSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHH-HHHHHh-----------CCCEEEEeCCHHHHHHHH
Confidence 5777887877776654 678999999999996432 233332 334899999999999864
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=90.94 E-value=0.37 Score=42.70 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=23.6
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~ 202 (494)
|.-+++.+++|+|||.. ++-++..+..+ +..+++++
T Consensus 26 gsl~li~G~pGsGKT~l-~~qia~~~~~~--------~~~~~~is 61 (242)
T d1tf7a2 26 DSIILATGATGTGKTLL-VSRFVENACAN--------KERAILFA 61 (242)
T ss_dssp SCEEEEEECTTSSHHHH-HHHHHHHHHTT--------TCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHH-HHHHHHHHHHh--------ccccceee
Confidence 46788899999999964 44444444332 44566665
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=90.87 E-value=0.55 Score=45.82 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=35.7
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhh----hHHHHHHHhcCcceecccce
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRR----GRMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TP----grl~dll~~~~~~~~~l~~l 234 (494)
.|+|++|+.|.|||.. +--+.+.+....- ...-.+.+.+.|-+.+=+| -.... .|+..++..- .....-
T Consensus 44 ~n~llvG~~GvGKtai-v~~la~~i~~~~v-p~~l~~~~i~~ld~~~l~a-g~~~~g~~e~r~~~i~~~~----~~~~~~ 116 (387)
T d1qvra2 44 NNPVLIGEPGVGKTAI-VEGLAQRIVKGDV-PEGLKGKRIVSLQMGSLLA-GAKYRGEFEERLKAVIQEV----VQSQGE 116 (387)
T ss_dssp CCCEEEECTTSCHHHH-HHHHHHHHHHTCS-CTTSTTCEEEEECC------------CHHHHHHHHHHHH----HTTCSS
T ss_pred CCCeEECCCCCCHHHH-HHHHHHHHHhCCC-CHHHcCceEEEeeHhhhhc-ccCcchhHHHHHHHHHHHh----ccCCCc
Confidence 5899999999999963 2233444444321 1111134455554544443 22222 3444444321 011112
Q ss_pred EEEEEcccchhcccC
Q 042373 235 TYLVLDEADRMFDMG 249 (494)
Q Consensus 235 ~~lVlDEaD~ml~~g 249 (494)
-.|++||+|.++..|
T Consensus 117 ~ilfide~h~l~~~g 131 (387)
T d1qvra2 117 VILFIDELHTVVGAG 131 (387)
T ss_dssp EEEEECCC-------
T ss_pred eEEEeccHHHHhcCC
Confidence 368999999998754
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.62 E-value=0.11 Score=46.20 Aligned_cols=84 Identities=25% Similarity=0.278 Sum_probs=44.4
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhhhhhh----HHHHHHHhcCcceecccce
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQVRRG----RMIDLLCKNGVKITNLTRV 234 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi~TPg----rl~dll~~~~~~~~~l~~l 234 (494)
.|++++++.|.|||..- --+.+.+....- ...-.+.. ++.+-.-.|.......| |+..++..- .....=
T Consensus 44 ~n~lLvG~pGVGKTalv-~~LA~ri~~~~v-p~~L~~~~-i~~ld~~~LiAg~~~rG~~E~rl~~il~e~----~~~~~~ 116 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIV-EGLAQRIINGEV-PEGLKGRR-VLALDMGALVAGAKYRGEFEERLKGVLNDL----AKQEGN 116 (195)
T ss_dssp CEEEEECCTTSCHHHHH-HHHHHHHHHTCS-CGGGTTCE-EEEECHHHHHTTTCSHHHHHHHHHHHHHHH----HHSTTT
T ss_pred CCeEEEecCCcccHHHH-HHHHHHHHhCCC-CHHHcCce-EEEeeHHHHhccCCccHHHHHHHHHHHHHH----hcCCCc
Confidence 59999999999999632 334444443221 11111333 55555555554443333 344444321 001111
Q ss_pred EEEEEcccchhcccC
Q 042373 235 TYLVLDEADRMFDMG 249 (494)
Q Consensus 235 ~~lVlDEaD~ml~~g 249 (494)
-.|++||+|.++..|
T Consensus 117 iILfIDeih~l~~~g 131 (195)
T d1jbka_ 117 VILFIDELHTMVGAG 131 (195)
T ss_dssp EEEEEETGGGGTT--
T ss_pred EEEEcchHHHHhcCC
Confidence 378999999998754
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=89.43 E-value=0.58 Score=38.84 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=42.9
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc---hhHHHhh-------------hhhhHHHHHHHhc
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT---GELVRQQ-------------VRRGRMIDLLCKN 224 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT---reLa~Qi-------------~TPgrl~dll~~~ 224 (494)
-++++|-.||||.- ++-.+++.... +.+++++-|. |.- ..+ .....+.+++...
T Consensus 5 ~~i~GpMfsGKTte-Li~~~~~~~~~--------~~kv~~ikp~~D~R~~-~~i~s~~g~~~~~~~~~~~~~~~~~~~~~ 74 (139)
T d2b8ta1 5 EFITGPMFAGKTAE-LIRRLHRLEYA--------DVKYLVFKPKIDTRSI-RNIQSRTGTSLPSVEVESAPEILNYIMSN 74 (139)
T ss_dssp EEEECSTTSCHHHH-HHHHHHHHHHT--------TCCEEEEEECCCGGGC-SSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred EEEEccccCHHHHH-HHHHHHHHHHC--------CCcEEEEEEccccccc-ceEEcccCceeeeEEeccchhhHHHHHhh
Confidence 46789999999964 44444444332 4568888886 421 112 2223444555432
Q ss_pred CcceecccceEEEEEcccchh
Q 042373 225 GVKITNLTRVTYLVLDEADRM 245 (494)
Q Consensus 225 ~~~~~~l~~l~~lVlDEaD~m 245 (494)
. ...+.+++.+|||+-+
T Consensus 75 ~----~~~~~dvI~IDE~QFf 91 (139)
T d2b8ta1 75 S----FNDETKVIGIDEVQFF 91 (139)
T ss_dssp T----SCTTCCEEEECSGGGS
T ss_pred c----cccCcCEEEechhhhc
Confidence 1 2357889999999864
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=88.98 E-value=0.5 Score=41.93 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=14.8
Q ss_pred CCEEEEcCCCCCchhhh
Q 042373 159 LDSVAITETGSGKTLAF 175 (494)
Q Consensus 159 rdvi~~a~TGSGKTlaf 175 (494)
..+++.||+|+|||.+.
T Consensus 44 ~~lll~GppGtGKT~l~ 60 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTL 60 (276)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 68999999999999643
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=88.91 E-value=0.56 Score=42.50 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=24.1
Q ss_pred CCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEc
Q 042373 158 GLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMA 202 (494)
Q Consensus 158 grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~ 202 (494)
|.=+++.|+||+|||. |++-+..++.... +-.+++++
T Consensus 35 G~l~vi~G~~G~GKT~-~~~~la~~~a~~~-------g~~v~~~s 71 (277)
T d1cr2a_ 35 GEVIMVTSGSGMGKST-FVRQQALQWGTAM-------GKKVGLAM 71 (277)
T ss_dssp TCEEEEECSTTSSHHH-HHHHHHHHHHHTS-------CCCEEEEE
T ss_pred CeEEEEEeCCCCCHHH-HHHHHHHhhhhhc-------ccceeEee
Confidence 5667888999999995 4444554443221 44677776
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.69 E-value=0.21 Score=41.59 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=20.6
Q ss_pred CCEEEEcCCCCCchhhhHHHHHHHHHcC
Q 042373 159 LDSVAITETGSGKTLAFLLPMLRHIWEQ 186 (494)
Q Consensus 159 rdvi~~a~TGSGKTlafllpil~~l~~~ 186 (494)
|++++.+|+|||||. .+--++..+...
T Consensus 2 k~v~ItG~~GtGKTt-l~~~i~~~l~~~ 28 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTT-LIHKASEVLKSS 28 (189)
T ss_dssp CCEEEESCCSSCHHH-HHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHH-HHHHHHHHHHHC
Confidence 789999999999997 444566666543
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.66 E-value=1.6 Score=38.38 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=26.2
Q ss_pred CCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcCCCEEEEcCCCCCchh
Q 042373 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISGLDSVAITETGSGKTL 173 (494)
Q Consensus 117 P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~grdvi~~a~TGSGKTl 173 (494)
|.|+.+-++|-=-...++.|.+. .++.+++.|+.|+|||.
T Consensus 5 ~~p~~~~~~f~GR~~el~~l~~~-----------------~~~~i~i~G~~G~GKTs 44 (283)
T d2fnaa2 5 TSPKDNRKDFFDREKEIEKLKGL-----------------RAPITLVLGLRRTGKSS 44 (283)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHHT-----------------CSSEEEEEESTTSSHHH
T ss_pred CCCCCChhhCCChHHHHHHHHhc-----------------cCCEEEEEcCCCCcHHH
Confidence 45555555554444555555431 34678999999999996
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=87.42 E-value=1.5 Score=37.19 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=41.1
Q ss_pred cceEEEEEcccchhcccCC--hhHHHHHHHhhcCCCcEEEecCCCChHHHHHH
Q 042373 232 TRVTYLVLDEADRMFDMGF--EPQITRIVQNIRPDRQAVLFSPTFPPRVEILA 282 (494)
Q Consensus 232 ~~l~~lVlDEaD~ml~~gf--~~~i~~Il~~l~~~~Q~ilfSAT~~~~v~~l~ 282 (494)
..+++|||||+-..+..|+ .+.+..+++.-|...-+|+..-..|+++..++
T Consensus 93 ~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p~~L~e~A 145 (157)
T d1g5ta_ 93 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLA 145 (157)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHC
T ss_pred CccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhc
Confidence 4589999999999998886 45777788877777778887777888887765
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=87.37 E-value=0.24 Score=48.26 Aligned_cols=46 Identities=13% Similarity=0.222 Sum_probs=32.6
Q ss_pred HcCCCEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHh
Q 042373 156 ISGLDSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQ 210 (494)
Q Consensus 156 l~grdvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Q 210 (494)
...++++++|+||||||.++ ..++..++.. +..++|+=|.-+++..
T Consensus 48 ~~~~H~~I~G~tGsGKT~~l-~~li~~~~~~--------g~~~iiiD~kge~~~~ 93 (433)
T d1e9ra_ 48 AEPRHLLVNGATGTGKSVLL-RELAYTGLLR--------GDRMVIVDPNGDMLSK 93 (433)
T ss_dssp GGGGCEEEEECTTSSHHHHH-HHHHHHHHHT--------TCEEEEEEETTHHHHH
T ss_pred cccceEEEEeCCCCcHHHHH-HHHHHHHHhC--------CCCEEEEeCChhHHHH
Confidence 44579999999999999764 4455555443 4567777888777654
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.51 E-value=0.2 Score=47.87 Aligned_cols=100 Identities=12% Similarity=0.064 Sum_probs=49.7
Q ss_pred CC-EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh-hhhhHHHHHHHhcCcceecccceEE
Q 042373 159 LD-SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ-VRRGRMIDLLCKNGVKITNLTRVTY 236 (494)
Q Consensus 159 rd-vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi-~TPgrl~dll~~~~~~~~~l~~l~~ 236 (494)
+. +++.+|+|+|||+..- .+-..+..+ -+. +.|..+.-+..-+ -+..++.+++..-. .-.+
T Consensus 123 ~g~~l~~G~pG~GKT~la~-ala~~~~~~--------~~~-~~~~~~~~~~~~~G~~e~~~~~~f~~a~-------~~~i 185 (321)
T d1w44a_ 123 SGMVIVTGKGNSGKTPLVH-ALGEALGGK--------DKY-ATVRFGEPLSGYNTDFNVFVDDIARAML-------QHRV 185 (321)
T ss_dssp SEEEEEECSSSSCHHHHHH-HHHHHHHTT--------SCC-EEEEBSCSSTTCBCCHHHHHHHHHHHHH-------HCSE
T ss_pred CceEEEECCCCccHHHHHH-HHHHHhcCC--------CCe-EEEEhhHhhhcccchHHHHHHHHHHHHh-------hccE
Confidence 44 4558999999997432 122222111 111 1122221111111 34566777766421 1248
Q ss_pred EEEcccchhcccC--------ChhHHHHHHHhh---cCCCcEEEecCCCC
Q 042373 237 LVLDEADRMFDMG--------FEPQITRIVQNI---RPDRQAVLFSPTFP 275 (494)
Q Consensus 237 lVlDEaD~ml~~g--------f~~~i~~Il~~l---~~~~Q~ilfSAT~~ 275 (494)
|++||+|.+.... -...+..++..+ .....++++.||-|
T Consensus 186 lf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~ 235 (321)
T d1w44a_ 186 IVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (321)
T ss_dssp EEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred EEeehhhhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCCC
Confidence 9999999987422 123344444332 23345777778865
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=85.87 E-value=0.49 Score=43.10 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++++|||||.
T Consensus 28 ~Ge~vaIvG~sGsGKST 44 (241)
T d2pmka1 28 QGEVIGIVGRSGSGKST 44 (241)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46778999999999996
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=85.17 E-value=0.32 Score=47.65 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=32.7
Q ss_pred CCCCCCcccCCCCHHHHHHHHhCCCCCCChhHHHHHHHHHcC--CCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 117 PKPIKTWRQTGLTTKILETFSKLNHENPVAIQAPASALIISG--LDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 117 P~pi~~f~~l~L~~~ll~~l~~~g~~~ptpiQ~~aip~il~g--rdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
..+..++.++|+++..+..++ .++.. -=+|+.+|||||||... ..++..+.
T Consensus 131 ~~~~~~l~~LG~~~~~~~~l~----------------~l~~~~~GliLvtGpTGSGKSTTl-~~~l~~~~ 183 (401)
T d1p9ra_ 131 NATRLDLHSLGMTAHNHDNFR----------------RLIKRPHGIILVTGPTGSGKSTTL-YAGLQELN 183 (401)
T ss_dssp TTTCCCGGGSCCCHHHHHHHH----------------HHHTSSSEEEEEECSTTSCHHHHH-HHHHHHHC
T ss_pred cccchhhhhhcccHHHHHHHH----------------HHHhhhhceEEEEcCCCCCccHHH-HHHhhhhc
Confidence 344556777777766655554 33433 23788899999999654 44666664
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=84.95 E-value=0.14 Score=51.05 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=19.3
Q ss_pred cCCCEEEEcCCCCCchhhhHHHHHHHHH
Q 042373 157 SGLDSVAITETGSGKTLAFLLPMLRHIW 184 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTlafllpil~~l~ 184 (494)
..+|+|+++|||||||+.. =.|..+.
T Consensus 48 ~ksNILliGPTGvGKTlLA--r~LAk~l 73 (443)
T d1g41a_ 48 TPKNILMIGPTGVGKTEIA--RRLAKLA 73 (443)
T ss_dssp CCCCEEEECCTTSSHHHHH--HHHHHHT
T ss_pred ccccEEEECCCCCCHHHHH--HHHHHHh
Confidence 4689999999999999733 3444443
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.75 E-value=0.28 Score=40.61 Aligned_cols=35 Identities=23% Similarity=0.132 Sum_probs=24.0
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT 204 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT 204 (494)
-++++|-.||||. .++-.+...... +..++++-|.
T Consensus 5 ~li~GpMfsGKTt-~Li~~~~~~~~~--------g~~v~~ikp~ 39 (133)
T d1xbta1 5 QVILGPMFSGKST-ELMRRVRRFQIA--------QYKCLVIKYA 39 (133)
T ss_dssp EEEECCTTSCHHH-HHHHHHHHHHTT--------TCCEEEEEET
T ss_pred EEEEecccCHHHH-HHHHHHHHHHHc--------CCcEEEEecc
Confidence 4778999999996 455555554332 4467888775
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=83.47 E-value=0.63 Score=42.57 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++|+|||||.
T Consensus 40 ~Ge~iaivG~sGsGKST 56 (253)
T d3b60a1 40 AGKTVALVGRSGSGKST 56 (253)
T ss_dssp TTCEEEEEECTTSSHHH
T ss_pred CCCEEEEECCCCChHHH
Confidence 57788999999999996
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=82.37 E-value=0.48 Score=43.52 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCCCchh
Q 042373 157 SGLDSVAITETGSGKTL 173 (494)
Q Consensus 157 ~grdvi~~a~TGSGKTl 173 (494)
.|.-+.+++++|||||.
T Consensus 43 ~Ge~vaivG~sGsGKST 59 (255)
T d2hyda1 43 KGETVAFVGMSGGGKST 59 (255)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 57788999999999996
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=82.10 E-value=0.55 Score=44.37 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=36.8
Q ss_pred CEEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccchhHHHhh------hhh---------hHHHHHHHhc
Q 042373 160 DSVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPTGELVRQQ------VRR---------GRMIDLLCKN 224 (494)
Q Consensus 160 dvi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PTreLa~Qi------~TP---------grl~dll~~~ 224 (494)
.+++++|||+|||...- .+...+.. ....++-....+..... ++| +.|...+...
T Consensus 55 ~~lf~Gp~G~GKt~lak--~la~~l~~--------~~~~~~~~~~~~~~~~~~~~~L~g~~~gyvG~~~~~~l~~~~~~~ 124 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAK--TLAATLFD--------TEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRR 124 (315)
T ss_dssp EEEEBSCSSSSHHHHHH--HHHHHHHS--------SGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHC
T ss_pred EEEEECCCcchHHHHHH--HHHHHhcC--------CCcceEEEeccccccchhhhhhcCCCCCCcCcccCChHHHHHHhC
Confidence 47888999999997543 34333311 11123333443333221 222 3455555442
Q ss_pred CcceecccceEEEEEcccchhc
Q 042373 225 GVKITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 225 ~~~~~~l~~l~~lVlDEaD~ml 246 (494)
.-.+|++||+|.+-
T Consensus 125 --------p~~Vvl~DEieK~~ 138 (315)
T d1qvra3 125 --------PYSVILFDEIEKAH 138 (315)
T ss_dssp --------SSEEEEESSGGGSC
T ss_pred --------CCcEEEEehHhhcC
Confidence 23589999999865
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=81.92 E-value=0.79 Score=38.14 Aligned_cols=71 Identities=17% Similarity=0.083 Sum_probs=39.9
Q ss_pred EEEEcCCCCCchhhhHHHHHHHHHcCCCCCCCCCCCeEEEEccc---hhHHHhhhhh----------hHHHHHHHhcCcc
Q 042373 161 SVAITETGSGKTLAFLLPMLRHIWEQPPVVPGDDSPVGLVMAPT---GELVRQQVRR----------GRMIDLLCKNGVK 227 (494)
Q Consensus 161 vi~~a~TGSGKTlafllpil~~l~~~~~~~~~~~~p~aLIl~PT---reLa~Qi~TP----------grl~dll~~~~~~ 227 (494)
-++++|-.||||.- |+-.+++.... +..++++.|. |--...+.|- ..+.++...
T Consensus 10 ~lI~GpMfSGKTte-Li~~~~~~~~~--------g~~vl~i~~~~D~Ry~~~~i~sh~g~~~~a~~~~~~~~~~~~---- 76 (141)
T d1xx6a1 10 EVIVGPMYSGKSEE-LIRRIRRAKIA--------KQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKY---- 76 (141)
T ss_dssp EEEECSTTSSHHHH-HHHHHHHHHHT--------TCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHH----
T ss_pred EEEEeccccHHHHH-HHHHHHHhhhc--------CCcEEEEEeccccccccceeeecccceEEEEEecchhhhhhh----
Confidence 47789999999964 44455444332 5578888885 4333333111 011122211
Q ss_pred eecccceEEEEEcccchhc
Q 042373 228 ITNLTRVTYLVLDEADRMF 246 (494)
Q Consensus 228 ~~~l~~l~~lVlDEaD~ml 246 (494)
...+.+++.+|||+-+-
T Consensus 77 --~~~~~dvI~IDE~QFf~ 93 (141)
T d1xx6a1 77 --FEEDTEVIAIDEVQFFD 93 (141)
T ss_dssp --CCTTCSEEEECSGGGSC
T ss_pred --hcccccEEEEeehhhcc
Confidence 13467899999998643
|