Citrus Sinensis ID: 042449

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
MASQQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFSGKNHVVAKRLVANDSISTSVHSTCRVSHARLVHMNRGPQLLTIFFGSPS
Secondary Structure (PSIPRED)
cccHHHHHHHHHcccccccccccccccccHHHHHHHHHccccccHHHHHHHccccHHHHHHccccHHHHHHHHcccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHcccEEEccccccccHHHHHHHHcccccccccHHHHEEEcccccccEccccEEcHHEEEHccccccEEEEEccccc
Coil and Loop (DISEMBL)
masqqgrqeldtrprqgetvvpggtggksLEAQEHLaegfsgknHVVAKRLVandsistsvhstCRVSHARLvhmnrgpqlltiffgsps
Flexible Loop (DISEMBL)
masqqgrqeldtrprqgetvvpggtgGKSLEAQEHLAEGFSGKNHVVAKRLVandsistsvhSTCRVSHArlvhmnrgpqlltiffgsps
Low Complexity Region (SEG)
MASQQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFSGKNHVVAKRLVANDSISTSVHSTCRVSHARLVHMNRGPQLLTIFFGSPS
Disordered region (IsUnstruct)
*******************************************NHVVAKRLVANDSISTSVHSTCRVSHARLVHMNRGPQLLTIFF****
Disordered Region (DISOPRED)
************************T****************************************************GPQLLTIFFGS**
Disordered Region (DISEMBL)
****************GETVVPGGTGGKSLEAQEHLAEGFSGKNHVVAKRLVANDSISTSVHSTCRVSHARLVHMNRGPQLLTIFFGSPS
Disordered Region (DISPRO)
***************************KS**************************SISTSVHSTCRVSHARLVHMNRGPQLLTIFFGS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASQQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFSGKNHVVAKRLVANDSISTSVHSTCRVSHARLVHMNRGPQLLTIFFGSPS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	90	2.2.26 [Sep-21-2011]
P17639	92	EMB-1 protein OS=Daucus c	N/A	no	0.455	0.445	0.829	6e-12
P11573	83	Late seed maturation prot	N/A	no	0.455	0.493	0.731	5e-10
Q02973	92	Em-like protein GEA6 OS=A	yes	no	0.455	0.445	0.731	7e-10
P46517	91	Late embryogenesis abunda	N/A	no	0.455	0.450	0.761	8e-10
Q07187	152	Em-like protein GEA1 OS=A	no	no	0.811	0.480	0.493	1e-09
Q40864	91	Em-like protein OS=Picea	N/A	no	0.455	0.450	0.731	2e-09
P46520	95	Embryonic abundant protei	yes	no	0.455	0.431	0.75	3e-09
P42755	93	Em protein H5 OS=Triticum	N/A	no	0.455	0.440	0.785	3e-09
Q02400	133	Late embryogenesis abunda	N/A	no	0.455	0.308	0.785	3e-09
Q05191	153	Late embryogenesis abunda	N/A	no	0.455	0.267	0.785	3e-09

>sp|P17639|EMB1_DAUCA EMB-1 protein OS=Daucus carota GN=EMB-1 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/41 (82%), Positives = 37/41 (90%)

Query: 1  MASQQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
          MASQQ ++ELD R RQGETVVPGGTGGKSLEAQ+HLAEG S
Sbjct: 1  MASQQEKKELDARARQGETVVPGGTGGKSLEAQQHLAEGRS 41

Daucus carota (taxid: 4039)

>sp|P11573|SEEP_RAPSA Late seed maturation protein P8B6 OS=Raphanus sativus PE=2 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 36/41 (87%)

Query: 1  MASQQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
          MASQQ +++LD R ++GETVVPGGTGGKS EAQ+HLAEG S
Sbjct: 1  MASQQEKKQLDERAKKGETVVPGGTGGKSFEAQQHLAEGRS 41

This protein may play a role in equipping the seed for survival, maintaining a minimal level of hydration in the dry organism and preventing the denaturation of cytoplasmic components, or may play a role during imbibition by controlling water uptake.

Raphanus sativus (taxid: 3726)

>sp|Q02973|EM6_ARATH Em-like protein GEA6 OS=Arabidopsis thaliana GN=EM6 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 36/41 (87%)

Query: 1  MASQQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
          MASQQ +++LD R ++GETVVPGGTGGKS EAQ+HLAEG S
Sbjct: 1  MASQQEKKQLDERAKKGETVVPGGTGGKSFEAQQHLAEGRS 41

It is thought to provide protection for the cytoplasm during the desiccation stage of embryo development.

Arabidopsis thaliana (taxid: 3702)

>sp|P46517|EMB5_MAIZE Late embryogenesis abundant protein EMB564 OS=Zea mays PE=2 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/42 (76%), Positives = 37/42 (88%), Gaps = 1/42 (2%)

Query: 1  MAS-QQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
          MAS Q+ R+ELD + R+GETVVPGGTGGKS+EAQEHLAEG S
Sbjct: 1  MASGQESRKELDRKAREGETVVPGGTGGKSVEAQEHLAEGRS 42

LEA proteins are late embryonic proteins abundant in higher plant seed embryos. They may play an essential role in seed survival and in controlling water exchanges during seed desiccation and imbibition.

Zea mays (taxid: 4577)

>sp|Q07187|EM1_ARATH Em-like protein GEA1 OS=Arabidopsis thaliana GN=EM1 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 1  MASQQ-GRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFSGKNHVVAKRLVANDSIST 59
          MAS+Q  R+ELD + +QGETVVPGGTGG SLEAQEHLAEG S K     K  + ++    
Sbjct: 1  MASKQLSREELDEKAKQGETVVPGGTGGHSLEAQEHLAEGRS-KGGQTRKEQLGHEGYQE 59

Query: 60 SVHSTCRVSHARLVH 74
            H        +L H
Sbjct: 60 IGHKGGEARKEQLGH 74

It is thought to provide protection for the cytoplasm during the desiccation stage of embryo development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40864|EML_PICGL Em-like protein OS=Picea glauca PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 34/41 (82%)

Query: 1  MASQQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
          M  QQ R+ELD + R+GETVVPGGTGGKSL+AQE LAEG S
Sbjct: 1  MEQQQDRRELDAKAREGETVVPGGTGGKSLDAQERLAEGRS 41

Picea glauca (taxid: 3330)

>sp|P46520|EMP1_ORYSJ Embryonic abundant protein 1 OS=Oryza sativa subsp. japonica GN=EMP1 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 36/44 (81%), Gaps = 3/44 (6%)

Query: 1  MAS---QQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
          MAS   QQGR ELD   R+G+TVVPGGTGGKSLEAQE+LAEG S
Sbjct: 1  MASGQQQQGRSELDRMAREGQTVVPGGTGGKSLEAQENLAEGRS 44

Em protein may act as a cytoplasm protectant during desiccation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P42755|EM4_WHEAT Em protein H5 OS=Triticum aestivum GN=EMH5 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/42 (78%), Positives = 35/42 (83%), Gaps = 1/42 (2%)

Query: 1  MAS-QQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
          MAS QQ R ELD   R+GETVVPGGTGGKSLEAQEHLA+G S
Sbjct: 1  MASGQQERSELDRMAREGETVVPGGTGGKSLEAQEHLADGRS 42

It is thought to provide protection for the cytoplasm during the desiccation stage of embryo development.

Triticum aestivum (taxid: 4565)

>sp|Q02400|LE193_HORVU Late embryogenesis abundant protein B19.3 OS=Hordeum vulgare GN=B19.3 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/42 (78%), Positives = 35/42 (83%), Gaps = 1/42 (2%)

Query: 1  MAS-QQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
          MAS QQ R ELD   R+GETVVPGGTGGK+LEAQEHLAEG S
Sbjct: 1  MASGQQERSELDRMAREGETVVPGGTGGKTLEAQEHLAEGRS 42

Lea proteins are late embryonic proteins abundant in higher plant seed embryos.

Hordeum vulgare (taxid: 4513)

>sp|Q05191|LE194_HORVU Late embryogenesis abundant protein B19.4 OS=Hordeum vulgare GN=B19.4 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/42 (78%), Positives = 35/42 (83%), Gaps = 1/42 (2%)

Query: 1  MAS-QQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
          MAS QQ R ELD   R+GETVVPGGTGGK+LEAQEHLAEG S
Sbjct: 1  MASGQQERSELDRMAREGETVVPGGTGGKTLEAQEHLAEGRS 42

Lea proteins are late embryonic proteins abundant in higher plant seed embryos.

Hordeum vulgare (taxid: 4513)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
18499	110	late embryogenesis abundant protein [Gos	0.455	0.372	0.878	1e-11
444336	110	water stress-related protein	0.455	0.372	0.853	4e-11
119316	92	RecName: Full=EMB-1 protein gi|18341|emb	0.455	0.445	0.829	3e-10
312599815	98	late embryogenesis abundant protein grou	0.455	0.418	0.829	4e-10
28194651	95	putative lea 1 [Arachis hypogaea]	0.455	0.431	0.857	4e-10
312599811	96	late embryogenesis abundant protein grou	0.455	0.427	0.857	4e-10
71040659	91	lea protein 1 [Arachis hypogaea]	0.455	0.450	0.857	4e-10
66735602	95	LEA protein [Arachis hypogaea]	0.444	0.421	0.825	7e-10
351720728	101	uncharacterized protein LOC100500126 [Gl	0.455	0.405	0.833	9e-10
1754977	112	Em protein [Robinia pseudoacacia]	0.566	0.455	0.711	1e-09

>gi|18499|emb|CAA38374.1| late embryogenesis abundant protein [Gossypium hirsutum] gi|167330|gb|AAA33057.1| embryogensis abundant protein [Gossypium hirsutum] gi|167353|gb|AAB00728.1| water-stress protectant protein [Gossypium hirsutum] gi|167355|gb|AAA33064.1| late embryogenesis-abundant protein 2-D [Gossypium hirsutum]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/41 (87%), Positives = 37/41 (90%)

Query: 1  MASQQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
          MASQQ RQELD R RQGETV+PGGTGGKSLEAQEHLAEG S
Sbjct: 1  MASQQERQELDARARQGETVIPGGTGGKSLEAQEHLAEGRS 41

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444336|prf||1906384B water stress-related protein

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/41 (85%), Positives = 37/41 (90%)

Query: 1  MASQQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
          MASQQ RQ+LD R RQGETV+PGGTGGKSLEAQEHLAEG S
Sbjct: 1  MASQQERQQLDARARQGETVIPGGTGGKSLEAQEHLAEGRS 41

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|119316|sp|P17639.1|EMB1_DAUCA RecName: Full=EMB-1 protein gi|18341|emb|CAA35610.1| unnamed protein product [Daucus carota] gi|505193|emb|CAA42717.1| EMB-1 protein [Daucus carota] gi|57506546|dbj|BAD86647.1| EMB1 protein [Daucus carota]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/41 (82%), Positives = 37/41 (90%)

Query: 1  MASQQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
          MASQQ ++ELD R RQGETVVPGGTGGKSLEAQ+HLAEG S
Sbjct: 1  MASQQEKKELDARARQGETVVPGGTGGKSLEAQQHLAEGRS 41

Source: Daucus carota

Species: Daucus carota

Genus: Daucus

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312599815|gb|ADQ91833.1| late embryogenesis abundant protein group 1 protein [Arachis hypogaea]

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/41 (82%), Positives = 37/41 (90%)

Query: 1  MASQQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
          MAS+Q +QELD R +QGETVVPGGTGGKSLEAQEHLAEG S
Sbjct: 1  MASKQQKQELDERAKQGETVVPGGTGGKSLEAQEHLAEGRS 41

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28194651|gb|AAO33587.1|AF479305_1 putative lea 1 [Arachis hypogaea]

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 37/42 (88%), Gaps = 1/42 (2%)

Query: 1  MAS-QQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
          MAS QQ RQELD R +QGETVVPGGTGGKSLEAQEHLAEG S
Sbjct: 1  MASKQQNRQELDERAKQGETVVPGGTGGKSLEAQEHLAEGRS 42

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312599811|gb|ADQ91831.1| late embryogenesis abundant protein group 1 protein [Arachis hypogaea]

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 37/42 (88%), Gaps = 1/42 (2%)

Query: 1  MAS-QQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
          MAS QQ RQELD R +QGETVVPGGTGGKSLEAQEHLAEG S
Sbjct: 1  MASKQQNRQELDERAKQGETVVPGGTGGKSLEAQEHLAEGRS 42

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71040659|gb|AAZ20278.1| lea protein 1 [Arachis hypogaea]

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 37/42 (88%), Gaps = 1/42 (2%)

Query: 1  MAS-QQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
          MAS QQ RQELD R +QGETVVPGGTGGKSLEAQEHLAEG S
Sbjct: 1  MASKQQNRQELDERAKQGETVVPGGTGGKSLEAQEHLAEGKS 42

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|66735602|gb|AAY54009.1| LEA protein [Arachis hypogaea]

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/40 (82%), Positives = 35/40 (87%)

Query: 2  ASQQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
          + QQ RQELD R +QGETVVPGGTGGKSLEAQEHLAEG S
Sbjct: 2  SKQQNRQELDERAKQGETVVPGGTGGKSLEAQEHLAEGRS 41

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720728|ref|NP_001237186.1| uncharacterized protein LOC100500126 [Glycine max] gi|255629381|gb|ACU15035.1| unknown [Glycine max]

 Score = 67.4 bits (163), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/42 (83%), Positives = 37/42 (88%), Gaps = 1/42 (2%)

Query: 1  MAS-QQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
          MAS QQ +QELD R RQGETVVPGGTGGKSLEAQ+HLAEG S
Sbjct: 1  MASHQQNKQELDERARQGETVVPGGTGGKSLEAQQHLAEGRS 42

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1754977|gb|AAB39473.1| Em protein [Robinia pseudoacacia]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 40/52 (76%), Gaps = 1/52 (1%)

Query: 1  MASQQ-GRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFSGKNHVVAKRL 51
          MASQQ  R+ELD R R GETVVPGGTGGKSLEAQEHLAEG S   H   ++L
Sbjct: 1  MASQQQNREELDERARHGETVVPGGTGGKSLEAQEHLAEGRSRGGHTRKQQL 52

Source: Robinia pseudoacacia

Species: Robinia pseudoacacia

Genus: Robinia

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
TAIR|locus:2065041	92	GEA6 "AT2G40170" [Arabidopsis	0.455	0.445	0.731	2.8e-11
TAIR|locus:2074383	152	EM1 "AT3G51810" [Arabidopsis t	0.811	0.480	0.493	3.5e-11
UNIPROTKB|P46520	95	EMP1 "Embryonic abundant prote	0.422	0.4	0.789	9.4e-11

TAIR|locus:2065041 GEA6 "AT2G40170" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 30/41 (73%), Positives = 36/41 (87%)

Query:     1 MASQQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
             MASQQ +++LD R ++GETVVPGGTGGKS EAQ+HLAEG S
Sbjct:     1 MASQQEKKQLDERAKKGETVVPGGTGGKSFEAQQHLAEGRS 41

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0048316 "seed development" evidence=IMP

GO:0048700 "acquisition of desiccation tolerance in seed" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA;TAS

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

TAIR|locus:2074383 EM1 "AT3G51810" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 37/75 (49%), Positives = 45/75 (60%)

Query:     1 MASQQ-GRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFSGKNHVVAKRLVANDSIST 59
             MAS+Q  R+ELD + +QGETVVPGGTGG SLEAQEHLAEG S K     K  + ++    
Sbjct:     1 MASKQLSREELDEKAKQGETVVPGGTGGHSLEAQEHLAEGRS-KGGQTRKEQLGHEGYQE 59

Query:    60 SVHSTCRVSHARLVH 74
               H        +L H
Sbjct:    60 IGHKGGEARKEQLGH 74

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;TAS

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA;TAS

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

UNIPROTKB|P46520 EMP1 "Embryonic abundant protein 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 30/38 (78%), Positives = 33/38 (86%)

Query:     4 QQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
             QQGR ELD   R+G+TVVPGGTGGKSLEAQE+LAEG S
Sbjct:     7 QQGRSELDRMAREGQTVVPGGTGGKSLEAQENLAEGRS 44


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       90        90   0.00091  102 3  11 23  0.36    30
                                                     29  0.39    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  497 (53 KB)
  Total size of DFA:  94 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.61u 0.11s 9.72t   Elapsed:  00:00:00
  Total cpu time:  9.61u 0.11s 9.72t   Elapsed:  00:00:00
  Start:  Fri May 10 08:51:40 2013   End:  Fri May 10 08:51:40 2013

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q02973	EM6_ARATH	No assigned EC number	0.7317	0.4555	0.4456	yes	no
P46520	EMP1_ORYSJ	No assigned EC number	0.75	0.4555	0.4315	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029315001 SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (95 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	90
pfam00477	109	pfam00477, LEA_5, Small hydrophilic plant seed pro	4e-13

>gnl|CDD|109530 pfam00477, LEA_5, Small hydrophilic plant seed protein

 Score = 59.3 bits (143), Expect = 4e-13
 Identities = 35/52 (67%), Positives = 40/52 (76%), Gaps = 1/52 (1%)

Query: 1  MAS-QQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFSGKNHVVAKRL 51
          MAS Q+ R+ELD R +QGETVVPGGTGGKSLEAQEHLAEG S       ++L
Sbjct: 1  MASGQEEREELDRRAKQGETVVPGGTGGKSLEAQEHLAEGRSKGGQTRKEQL 52

Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
PF00477	109	LEA_5: Small hydrophilic plant seed protein; Inter	99.93

>PF00477 LEA_5: Small hydrophilic plant seed protein; InterPro: IPR000389 This entry contains a number of bacterial proteins annotated as stress-induced and members of the plant LEA (late embryogenesis abundant) proteins, which are small hydrophilic plant seed proteins that are structurally related

Probab=99.93  E-value=3.5e-27  Score=165.60  Aligned_cols=57  Identities=56%  Similarity=0.703  Sum_probs=54.6

Q ss_pred             Ccc-hhchhhhhhcccCCCeeecCCCCCCchHHHHHHhhccCCCchhhhhhcccccce
Q 042449            1 MAS-QQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFSGKNHVVAKRLVANDSI   57 (90)
Q Consensus         1 Mas-qq~R~ELD~rAr~GETVVpGGTGGkSLeAQe~LAEGRskGGqtRkeqlG~eg~i   57 (90)
                      ||| |++|+|||++||+||||||||||||||+||++|||||+|||++|++++|.|+|-
T Consensus         1 ma~~q~~r~eld~~aregetvv~gGtggksl~aqe~laEggkKGGetr~e~~G~E~Yq   58 (109)
T PF00477_consen    1 MASGQESREELDARAREGETVVPGGTGGKSLEAQERLAEGGKKGGETRKEQHGKEFYQ   58 (109)
T ss_pred             CcchhHHHHHHHHHHhcCCccccCCCCCCcchHHHHHHHHHhhcccchhhhcchhHHH
Confidence            899 668999999999999999999999999999999999999999999999999873

These proteins contains from 83 to 153 amino acid residues and may play a role [, ] in equipping the seed for survival, maintaining a minimal level of hydration in the dry organism and preventing the denaturation of cytoplasmic components. They may also play a role during imbibition by controlling water uptake.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00