Citrus Sinensis ID: 042478

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950----
Protein Sequence
MEARKTQLLRILVVILLQHHLQISLTLVGATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPSITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTDDSVDSRFNGFLSIHFNESSKSNQQLSCSLFPSAVNLSSNSNVSLPFYDNKVKPSPLLSSTPRFLTVIAMAPPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKKEL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccHHHHHHHHHHHHHHccccccccccEEEEEEccEEEEEEEccHHHHHHHHccccEEEEEccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccEEccccccccEEEEEEEEccccccHHHHHHHHHHHccccccEEEEEEccccccccccccccHHHHHHHHHHHcccEEEEccccccccccEEEcccccEEEEEcccccccccEEEEEccccEEEEEEEEcccccccccEEEEccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHcccEEEEEEEcccccccccccccEEEEcHHHHHHHHHHHHHccccEEEEEcccEEcccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEcccccccHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHcccccHHHHHHHcccccccccccccccccccccEEEcccccccEEEEEEEEEEccccccEEEEEEEccccEEEEEEEcEEEEEEcccEEEEEEEEEEccccccccccccEEEEEEEEccccEEEEccEEEEEEEcccccccccccccccccccccccccEEEEEEcccccccccccccccccEEEEcccccccccccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEcccEEEEEEccccEEEEEEccccccccccccccccEEEEHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccHHHHHHHHHHHHHHccccHHcccHEEEEEcccEcEEEEEccHHHHHHHHHcccEEEEEcccEEEEEccccHHHcccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccEEcccccccccHHccHEEEHHHHccccccccccccccccccccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHccccEEEEEEccccccccccccccHHHHHHHHHHHcccEEEEEccccccccccEEccccEEEEEEccccccccccEEEEccccEEEEEEEccccccccccEEEEcccccccccccHHcccccccHHHcccEEEEEEccccHHHHHHHHHHHHHcccEEEEEEccccccccccccccEEEEcHHHHHHHHHHHHcccccEEEEEcccEEEccccccEEEEEcccccccccHHHccccccccccEEEEEccccccccccEEEEEccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccEccccHHHcccccccccccccccccccccccHHHcccccEEEEccHHHHHHHHHHccccHHHHHHHHcccccccccccccccccccEEEEEcccccEEEEEEEEEEEccccccEEEEEEEccccEEEEEEccEEEEEEccEEEEEEEEEEEEEcccccccccEEEEEEEEEcccEEEEEEEEEEEEEcccccccccEEEEEcHHHHHEcccccEEEEEcccccccccccccccccHEEEEEcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccEEHHHHHcccHccHccccEEEEEEEEEEccccEEEEEcccHHHHHHHHHccccccccccccccccHEEHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccEHcccccc
Coil and Loop (DISEMBL)
MEARKTQLLRILVVILLQHHLQISLTLVGATSNVHIVYMGekkyedpvaitkSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIaelpgvvqvipngilklhttrswefmglhyyqssknlstesnmgegtiigiidtgvwpesesfsdkgmgqapvpphwkgicqkgekfnssncnrkligARWFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSigneiplfsyidqrdsiaigSFHAIAKGITVvssagndgpvaqtivntapwiitvgattidrafptaitlgnhqvlwgqsidigkvshgftgltyseriafdpdsandcrqgslnATLAAGKIIlcfsrpdtqdIQSAAISVTQAGGVGLIYAQFHtdgldscnlipcikvNYEVGTQILSYIRRArspiaklsspetvigdlvsprvasfssrgpnsmspavlkpdivapgvdilsayppigskdiqgyallsgtsmscpHVAGIAALIKSLHRDWSPAAIRSALVTTasqtgtdgmnifeegstrkeadpfdiggghvnpnkamnpglvyDITVEDYIQFLCFmghndasiSRLTKSKINclknnhlaldlnlpsitipnlhnnetvTVTRKVTNVGQINSAYEALveapygvnmtvepevisfNMTIKILSFRVTFfsnhkvhpvpdaeyrfgsltwtddsvdsrFNGFLSIhfnessksnqqlscslfpsavnlssnsnvslpfydnkvkpspllsstprfltviamappkpggkakAKKVLGLIKLALeagkatpappvgpalgakgVNIMAFCKDYnartadkagyvipveitvyddrsftfilktppaSVLLLKAAgvekgskdpkqqkvGKITIEQLRAIATeklpdlnctsIESAMRIIAGTaanmgididppvletkkkel
Flexible Loop (DISEMBL)
MEARKTQLLRILVVILLQHHLQISLTLVGATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAelpgvvqvipnGILKLHTTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSpiaklsspetvigdLVSPRVASfssrgpnsmspavLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVttasqtgtdgmniFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPSITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTDDSVDSRFNGFLSIHFNESSKSNQQLSCSLFPSAVNLSSNSNVSLPFYDNKVKPSPLLSSTPRFLTVIAMappkpggkaKAKKVLGLIKLALEagkatpappvgpALGAKGVNIMAFCKDYNArtadkagyvIPVEITVYDDRSFTFILKTPPASVLLLKAAGvekgskdpkqqkvgkITIEQLRAiateklpdlncTSIESAMRIIAGTAanmgididppvletkkkel
Low Complexity Region (SEG)
MEARKTqllrilvvillqhhlqiSLTLVGATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTESNMgegtiigiidtgVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEglaaglarggaplahlaIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPSITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTDDSVDSRFNGFLSIHFNESSKSNQQLSCSLFPSAvnlssnsnvslPFYDNKVKPSPLLSSTPRFLTVIAMappkpggkakakkvlgliklalEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKKEL
Disordered region (IsUnstruct)
******QLLRILVVILLQHHLQISLTLVGATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSS********MGEGTIIGIIDTGVWP****************PHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAK******VIGD*********************LKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTA*********************************KAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPSITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTDDSVDSRFNGFLSIHFN*****************************FY**************RFLTVIAM***********KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAG*************GKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI************
Disordered Region (DISOPRED)
******Q**RILVVILLQHHLQISLTLVGATSNVHIVYMGE*************HRF**************ILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFMGLHYY************GEGTIIGIIDTGVWPESESFSD**MGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPSITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTDDSVDSRFNGFLSIHFNES**********************NVSLPFYDNKVKPSPLLSSTPRF**************AKAKKVLGLIKLA**************ALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLL*******************ITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLET*****
Disordered Region (DISEMBL)
MEARKTQLLRILVVILLQHHLQISLTLVGATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPE************PVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRV**********MSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPSITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTDDSVDSRFNGFLSIHFNESSKSNQQLSCSLFPSAVNLSSNSNVSLPFYDNKVKPSPLLSSTPRFLTVIAMAPPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGV**********KVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKKEL
Disordered Region (DISPRO)
***RKTQLLRILVVILLQHHLQISLTLVGATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPSITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTDDSVDSRFNGFLSIHFNESSKSNQQLSCSLFPSAVNLSSNSNVSLPFYDNKVKPSPLLSSTPRFLTVIAMAPPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLET*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEARKTQLLRILVVILLQHHLQISLTLVGATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPSITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTDDSVDSRFNGFLSIHFNESSKSNQQLSCSLFPSAVNLSSNSNVSLPFYDNKVKPSPLLSSTPRFLTVIAMAPPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKKEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	954	2.2.26 [Sep-21-2011]
O64495	775	Subtilisin-like protease	no	no	0.662	0.815	0.405	1e-136
O65351	757	Subtilisin-like protease	no	no	0.702	0.885	0.381	1e-129
Q39547	731	Cucumisin OS=Cucumis melo	N/A	no	0.682	0.890	0.386	1e-123
Q9LLL8	749	Xylem serine proteinase 1	no	no	0.664	0.846	0.390	1e-114
Q9MAP3	222	50S ribosomal protein L11	no	no	0.210	0.905	0.817	3e-89
P31164	224	50S ribosomal protein L11	N/A	no	0.194	0.830	0.780	7e-77
B8HVL5	141	50S ribosomal protein L11	yes	no	0.144	0.978	0.717	6e-53
Q7V479	141	50S ribosomal protein L11	yes	no	0.144	0.978	0.739	7e-53
O78412	141	50S ribosomal protein L11	yes	no	0.144	0.978	0.724	8e-53
Q31QK3	141	50S ribosomal protein L11	yes	no	0.144	0.978	0.731	8e-53

>sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1

 Score =  486 bits (1250), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 287/708 (40%), Positives = 414/708 (58%), Gaps = 76/708 (10%)

Query: 72  ILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSSKN 131
           +LYSY     GFAA+LT+++AE +   P VV V P+ +L++ TT S++F+GL  + +S  
Sbjct: 71  LLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKFLGLDGFGNS-G 129

Query: 132 LSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKL 191
           + ++S  G+GTIIG++DTGVWPES SF D GM    +P  WKGICQ+GE F+SS+CNRKL
Sbjct: 130 VWSKSRFGQGTIIGVLDTGVWPESPSFDDTGM--PSIPRKWKGICQEGESFSSSSCNRKL 187

Query: 192 IGARWFIKG-------------IMDMINASTNTDEGL-------------------AAGL 219
           IGAR+FI+G               + I+A  +T  G                     AG+
Sbjct: 188 IGARFFIRGHRVANSPEESPNMPREYISARDSTGHGTHTASTVGGSSVSMANVLGNGAGV 247

Query: 220 ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGN-EIPLFSYIDQRD 278
           ARG AP AH+A+YK CW  GC  +D+L A D AI D VDVLS+S+G   IPL+      D
Sbjct: 248 ARGMAPGAHIAVYKVCWFNGCYSSDILAAIDVAIQDKVDVLSLSLGGFPIPLYD-----D 302

Query: 279 SIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQV 338
           +IAIG+F A+ +GI+V+ +AGN+GP+  ++ NTAPW+ T+GA T+DR FP  + L N ++
Sbjct: 303 TIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRLANGKL 362

Query: 339 LWGQSIDIGKVSHGFTGLTYSER------IAFDPDSANDCRQGSLNATLAAGKIILCFSR 392
           L+G+S+  GK      G+  + R      +      +  C +GSL      GK+++C   
Sbjct: 363 LYGESLYPGK------GIKNAGREVEVIYVTGGDKGSEFCLRGSLPREEIRGKMVICDRG 416

Query: 393 PDTQDIQSAAISVTQAGGVGLIYAQF----HTDGLDSCNLIPCIKVNYEVGTQILSYIRR 448
            + +  +  A  V +AGGV +I A        D +D  +L+P   + Y     + +Y+  
Sbjct: 417 VNGRSEKGEA--VKEAGGVAMILANTEINQEEDSID-VHLLPATLIGYTESVLLKAYVNA 473

Query: 449 ARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYP----- 503
              P A++    TVIG   +P VA FS+RGP+  +P++LKPD++APGV+I++A+P     
Sbjct: 474 TVKPKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVNIIAAWPQNLGP 533

Query: 504 ---PIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDG 560
              P  S+ +  + ++SGTSMSCPHV+GI ALI+S + +WSPAAI+SAL+TTA      G
Sbjct: 534 TGLPYDSRRVN-FTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTADLYDRQG 592

Query: 561 MNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLT 620
             I ++G+  K A  F IG GHVNP KA+NPGLVY+I   DYI +LC +G   + I  +T
Sbjct: 593 KAI-KDGN--KPAGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDILAIT 649

Query: 621 KSKINC---LKNNHLALDLNLPSITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYG 677
              ++C   L+ N     LN PSI +       T  +TR+VTNVG  NS Y   V+AP G
Sbjct: 650 HKNVSCNGILRKNP-GFSLNYPSIAVIFKRGKTTEMITRRVTNVGSPNSIYSVNVKAPEG 708

Query: 678 VNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTD 725
           + + V P+ + F    + LS+RV F    K      A +  G LTW +
Sbjct: 709 IKVIVNPKRLVFKHVDQTLSYRVWFVLKKKNRGGKVASFAQGQLTWVN 756

Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE).
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1

 Score =  462 bits (1188), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 280/733 (38%), Positives = 415/733 (56%), Gaps = 63/733 (8%)

Query: 35  HIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEK 94
           +IV+M   K + P +     + + S++    ++A+  +LY+Y++   GF+ RLT+ +A+ 
Sbjct: 32  YIVHMA--KSQMPSSFDLHSNWYDSSLRSISDSAE--LLYTYENAIHGFSTRLTQEEADS 87

Query: 95  IAELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPE 154
           +   PGV+ V+P    +LHTTR+  F+GL   + + +L  E+      ++G++DTGVWPE
Sbjct: 88  LMTQPGVISVLPEHRYELHTTRTPLFLGLD--EHTADLFPEAGSYSDVVVGVLDTGVWPE 145

Query: 155 SESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDE- 213
           S+S+SD+G G  P+P  WKG C+ G  F +S CNRKLIGAR+F +G    +     + E 
Sbjct: 146 SKSYSDEGFG--PIPSSWKGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPIDESKES 203

Query: 214 ----------------------------GLAAGLARGGAPLAHLAIYKACWDIGCTDADV 245
                                       G A+G ARG AP A +A+YK CW  GC  +D+
Sbjct: 204 RSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVAVYKVCWLGGCFSSDI 263

Query: 246 LKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVA 305
           L A DKAI D V+VLS+S+G  +  +     RD +AIG+F A+ +GI V  SAGN GP +
Sbjct: 264 LAAIDKAIADNVNVLSMSLGGGMSDY----YRDGVAIGAFAAMERGILVSCSAGNAGPSS 319

Query: 306 QTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGK-VSHGFTGLTYSERIAF 364
            ++ N APWI TVGA T+DR FP    LGN +   G S+  G+ +        Y+   A 
Sbjct: 320 SSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKLLPFIYAGN-AS 378

Query: 365 DPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLD 424
           +  + N C  G+L      GKI++C  R     +Q   + V  AGGVG+I A    +G +
Sbjct: 379 NATNGNLCMTGTLIPEKVKGKIVMC-DRGINARVQKGDV-VKAAGGVGMILANTAANGEE 436

Query: 425 ---SCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNS 481
                +L+P   V  + G  I  Y+    +P A +S   TV+G   SP VA+FSSRGPNS
Sbjct: 437 LVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNS 496

Query: 482 MSPAVLKPDIVAPGVDILSAYP----PIG----SKDIQGYALLSGTSMSCPHVAGIAALI 533
           ++P +LKPD++APGV+IL+A+     P G    S+ ++ + ++SGTSMSCPHV+G+AAL+
Sbjct: 497 ITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVE-FNIISGTSMSCPHVSGLAALL 555

Query: 534 KSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGL 593
           KS+H +WSPAAIRSAL+TTA +T  DG  + +  +T K + PFD G GHV+P  A NPGL
Sbjct: 556 KSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDI-ATGKPSTPFDHGAGHVSPTTATNPGL 614

Query: 594 VYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLAL-DLNLPSITIPNLHNNETV 652
           +YD+T EDY+ FLC + +    I  +++    C  +   ++ DLN PS  + N+      
Sbjct: 615 IYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAV-NVDGVGAY 673

Query: 653 TVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVP 712
             TR VT+VG   +    +     GV ++VEP V++F    +  S+ VTF  +      P
Sbjct: 674 KYTRTVTSVGGAGTYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSS---KP 730

Query: 713 DAEYRFGSLTWTD 725
                FGS+ W+D
Sbjct: 731 SGSNSFGSIEWSD 743

Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1

 Score =  442 bits (1137), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 281/727 (38%), Positives = 397/727 (54%), Gaps = 76/727 (10%)

Query: 33  NVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQA 92
           N++IVYMG +K EDP +    H   L  V+GS  A + S+L++YK  F+GFA +LT+ +A
Sbjct: 32  NIYIVYMG-RKLEDPDSAHLHHRAMLEQVVGSTFAPE-SVLHTYKRSFNGFAVKLTEEEA 89

Query: 93  EKIAELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVW 152
           EKIA + GVV V  N + +LHTTRSW+F+G       ++   ESN+    ++G++DTG+W
Sbjct: 90  EKIASMEGVVSVFLNEMNELHTTRSWDFLGFPLTVPRRS-QVESNI----VVGVLDTGIW 144

Query: 153 PESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWF----------IKGIM 202
           PES SF D+G   +P PP WKG C+    F    CNRK+IGAR +          + G  
Sbjct: 145 PESPSFDDEGF--SPPPPKWKGTCETSNNFR---CNRKIIGARSYHIGRPISPGDVNGPR 199

Query: 203 DMINASTNTDE-------------GLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAF 249
           D     T+T               GL  G ARGG PLA +A YK CW+ GC+D D+L A+
Sbjct: 200 DTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAY 259

Query: 250 DKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIV 309
           D AI DGVD++S+S+G   P   ++   D+IAIGSFHA+ +GI   +SAGN GP   T  
Sbjct: 260 DDAIADGVDIISLSVGGANPRHYFV---DAIAIGSFHAVERGILTSNSAGNGGPNFFTTA 316

Query: 310 NTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERI---AFDP 366
           + +PW+++V A+T+DR F T + +GN Q    Q + I    + +  L     I    FD 
Sbjct: 317 SLSPWLLSVAASTMDRKFVTQVQIGNGQSF--QGVSINTFDNQYYPLVSGRDIPNTGFDK 374

Query: 367 DSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSC 426
            ++  C   S+N  L  GKI++C +     +   +       G  G++      D  DS 
Sbjct: 375 STSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSL-----DGAAGVLMTSNTRDYADSY 429

Query: 427 NLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAV 486
            L P   ++       L YI   RSP A +    T++ +  +P V SFSSRGPN  +  V
Sbjct: 430 PL-PSSVLDPNDLLATLRYIYSIRSPGATIFKSTTIL-NASAPVVVSFSSRGPNRATKDV 487

Query: 487 LKPDIVAPGVDILSAYP---PIGS-KDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSP 542
           +KPDI  PGV+IL+A+P   P+G  +    + ++SGTSMSCPH+ GIA  +K+ +  WSP
Sbjct: 488 IKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSP 547

Query: 543 AAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDY 602
           AAI+SAL+TTAS      MN         +A+ F  G GHVNP KA+ PGLVYD    DY
Sbjct: 548 AAIKSALMTTASP-----MN----ARFNPQAE-FAYGSGHVNPLKAVRPGLVYDANESDY 597

Query: 603 IQFLCFMGHNDASISRLTKSKINCLK-NNHLALDLNLPSITI---PNLHNNETVTVTRKV 658
           ++FLC  G+N  ++ R+T     C   N     DLN PS  +   P+   N+     R +
Sbjct: 598 VKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQ--YFNRTL 655

Query: 659 TNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRF 718
           T+V    S Y A++ AP G+ ++V P V+SFN      SF +T   + K   V       
Sbjct: 656 TSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSIKGFVVS------ 709

Query: 719 GSLTWTD 725
            SL W+D
Sbjct: 710 ASLVWSD 716

Cucumis melo (taxid: 3656)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1

 Score =  414 bits (1063), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 277/710 (39%), Positives = 397/710 (55%), Gaps = 76/710 (10%)

Query: 33  NVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQA 92
           + +I+Y+G++  ++     K+H   LS++  S+E AK   +YSY   F+ FAA+L+  +A
Sbjct: 36  DFYIIYLGDRP-DNTEETIKTHINLLSSLNISQEEAKERKVYSYTKAFNAFAAKLSPHEA 94

Query: 93  EKIAELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVW 152
           +K+ E+  VV V  N   KLHTT+SW+F+GL    + ++L  E ++    IIG++DTG+ 
Sbjct: 95  KKMMEMEEVVSVSRNQYRKLHTTKSWDFVGLPL-TAKRHLKAERDV----IIGVLDTGIT 149

Query: 153 PESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWF----------IKGIM 202
           P+SESF D G+G  P P  WKG C  G   N + CN K+IGA++F          ++  +
Sbjct: 150 PDSESFLDHGLG--PPPAKWKGSC--GPYKNFTGCNNKIIGAKYFKHDGNVPAGEVRSPI 205

Query: 203 DMINASTNTDE-------------GLAAGLARGGAPLAHLAIYKACW-DIGCTDADVLKA 248
           D+    T+T               G+A G ARG  P A LA+YK CW   GC D D+L  
Sbjct: 206 DIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPSARLAMYKVCWARSGCADMDILAG 265

Query: 249 FDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTI 308
           F+ AIHDGV+++S+SIG  I  +S     DSI++GSFHA+ KGI  V+SAGNDGP + T+
Sbjct: 266 FEAAIHDGVEIISISIGGPIADYS----SDSISVGSFHAMRKGILTVASAGNDGPSSGTV 321

Query: 309 VNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDS 368
            N  PWI+TV A+ IDR F + I LGN +   G  I +         L      A + D 
Sbjct: 322 TNHEPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISMFSPKAKSYPLVSGVDAAKNTDD 381

Query: 369 ---ANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDS 425
              A  C   SL+     GK+++C  R     ++S   S   AG + ++  Q+    LD+
Sbjct: 382 KYLARYCFSDSLDRKKVKGKVMVC--RMGGGGVESTIKSYGGAGAI-IVSDQY----LDN 434

Query: 426 CNLI--PCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMS 483
             +   P   VN  VG  I  YI   RS  A +     V   + +P VASFSSRGPN  S
Sbjct: 435 AQIFMAPATSVNSSVGDIIYRYINSTRSASAVIQKTRQVT--IPAPFVASFSSRGPNPGS 492

Query: 484 PAVLKPDIVAPGVDILSAYPPI-------GSKDIQGYALLSGTSMSCPHVAGIAALIKSL 536
             +LKPDI APG+DIL+A+          G      + +LSGTSM+CPHVAG+AA +KS 
Sbjct: 493 IRLLKPDIAAPGIDILAAFTLKRSLTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSF 552

Query: 537 HRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYD 596
           H DW+PAAI+SA++T+A                 K+A+ F  GGG +NP +A +PGLVYD
Sbjct: 553 HPDWTPAAIKSAIITSAKPISR---------RVNKDAE-FAYGGGQINPRRAASPGLVYD 602

Query: 597 ITVEDYIQFLCFMGHNDASISRLTKSK-INCLK-NNHLALD-LNLPSITIPNLHNNETVT 653
           +    Y+QFLC  G+N  +++ L  ++ ++C      L  D LN P+I +  L + +T T
Sbjct: 603 MDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSLNYPTIQL-TLRSAKTST 661

Query: 654 VT---RKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRV 700
           +    R+VTNVG  +S Y A V AP GV +TVEP+ +SF+   +  SF+V
Sbjct: 662 LAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKV 711

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9MAP3|RK11_ARATH 50S ribosomal protein L11, chloroplastic OS=Arabidopsis thaliana GN=RPL11 PE=1 SV=1

 Score =  330 bits (846), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 170/208 (81%), Positives = 185/208 (88%), Gaps = 7/208 (3%)

Query: 747 NQQLSCSLFPSAVNLSSNSNVSLPFYDNKVKPSPLLSSTPRFLTVIAMAPPKPGGKAKAK 806
           N +LS SL   +  LSS +NVS+ F   K   SPLLSSTPRFLTVIAMAPPKPGGKAK  
Sbjct: 20  NSKLSHSL---SAKLSSKANVSVQFLGKKQ--SPLLSSTPRFLTVIAMAPPKPGGKAK-- 72

Query: 807 KVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDD 866
           KV+G+IKLALEAGKATPAPPVGPALG+KGVNIMAFCKDYNARTADKAGY+IPVEITV+DD
Sbjct: 73  KVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKAGYIIPVEITVFDD 132

Query: 867 RSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIES 926
           +SFTFILKTPPASVLLLKAAGVEKGSKDP+Q KVG ITI+QLR IA EKLPDLNCT+IES
Sbjct: 133 KSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNCTTIES 192

Query: 927 AMRIIAGTAANMGIDIDPPVLETKKKEL 954
           AMRIIAGTAANMGIDIDPP+LE KKK +
Sbjct: 193 AMRIIAGTAANMGIDIDPPILEPKKKAV 220

This protein binds directly to 23S ribosomal RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|P31164|RK11_SPIOL 50S ribosomal protein L11, chloroplastic OS=Spinacia oleracea GN=rpl11 PE=1 SV=1

 Score =  289 bits (740), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 149/191 (78%), Positives = 170/191 (89%), Gaps = 5/191 (2%)

Query: 764 NSNVSLPFYDNKVKPSPLLSSTPRFLTVIAMAPPKPGGKAKAKKVLGLIKLALEAGKATP 823
           N   SL F ++K+  SP  S++ R L+++AMAP KPG   KAKKV+G+IKLALEAGKATP
Sbjct: 37  NPRNSLQFLNSKLFLSPP-STSHRRLSIVAMAP-KPG---KAKKVIGVIKLALEAGKATP 91

Query: 824 APPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLL 883
           APPVGPALG+KGVNIMAFCKDYNARTADK G+VIPVEITV+DD+SFTFILKTPPASVLLL
Sbjct: 92  APPVGPALGSKGVNIMAFCKDYNARTADKPGFVIPVEITVFDDKSFTFILKTPPASVLLL 151

Query: 884 KAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 943
           KA+G EKGSKDP+ +KVGKITI+QLR IATEKLPDLNCT+IESAMRIIAGTAANMGIDID
Sbjct: 152 KASGAEKGSKDPQMEKVGKITIDQLRGIATEKLPDLNCTTIESAMRIIAGTAANMGIDID 211

Query: 944 PPVLETKKKEL 954
           PP+L  KKKE+
Sbjct: 212 PPILVKKKKEV 222

This protein binds directly to 23S ribosomal RNA.

Spinacia oleracea (taxid: 3562)

>sp|B8HVL5|RL11_CYAP4 50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplK PE=3 SV=1

 Score =  209 bits (533), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 99/138 (71%), Positives = 118/138 (85%)

Query: 805 AKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVY 864
           AKKV+ +IKLA+ AGKA PAPP+GPALG  GVNIM FCK+YNARTAD+AG VIPVEI+VY
Sbjct: 2   AKKVVAIIKLAITAGKANPAPPIGPALGQHGVNIMMFCKEYNARTADQAGLVIPVEISVY 61

Query: 865 DDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSI 924
           +DRSFTFILKTPPASVL+ KAAG+E+GS +P ++KVGKIT  QLR IA  KLPDLN   +
Sbjct: 62  EDRSFTFILKTPPASVLIQKAAGIERGSGEPNKKKVGKITTAQLREIAQTKLPDLNANDV 121

Query: 925 ESAMRIIAGTAANMGIDI 942
           ++AMRI+AGTA NMG+ I
Sbjct: 122 DAAMRIVAGTARNMGVTI 139

This protein binds directly to 23S ribosomal RNA.

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

>sp|Q7V479|RL11_PROMM 50S ribosomal protein L11 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplK PE=3 SV=1

 Score =  209 bits (533), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 102/138 (73%), Positives = 115/138 (83%)

Query: 805 AKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVY 864
           AKKV+ +IKLAL+AGKA PAPPVGPALG  GVNIMAFCK+YNART DKAG VIPVEI+V+
Sbjct: 2   AKKVVSVIKLALQAGKANPAPPVGPALGQHGVNIMAFCKEYNARTQDKAGLVIPVEISVF 61

Query: 865 DDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSI 924
           +DRSFTFI KTPPASVL+ KAAG+EKGS +    KVG ++  QL  IA  KLPDLNCTSI
Sbjct: 62  EDRSFTFITKTPPASVLITKAAGIEKGSGESAHGKVGSLSRSQLEEIAKTKLPDLNCTSI 121

Query: 925 ESAMRIIAGTAANMGIDI 942
           ESAMRII GTA NMG+ I
Sbjct: 122 ESAMRIIEGTARNMGVSI 139

This protein binds directly to 23S ribosomal RNA.

Prochlorococcus marinus (strain MIT 9313) (taxid: 74547)

>sp|O78412|RK11_GUITH 50S ribosomal protein L11, chloroplastic OS=Guillardia theta GN=rpl11 PE=3 SV=1

 Score =  209 bits (532), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 100/138 (72%), Positives = 119/138 (86%)

Query: 805 AKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVY 864
           AKKV+ +IKLALEAGKATPAPPVGPALG +GVNI+ FCKDYNARTADKAG +IPVEITVY
Sbjct: 2   AKKVVAIIKLALEAGKATPAPPVGPALGQRGVNIVMFCKDYNARTADKAGLIIPVEITVY 61

Query: 865 DDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSI 924
           +D+S+TF+LKTPPASVLL KAAGV+KGS +PK+ +VG +T +Q+  IA  KLPDLN   +
Sbjct: 62  EDKSYTFVLKTPPASVLLAKAAGVQKGSGNPKKTQVGSVTKKQVEEIAQTKLPDLNTRRL 121

Query: 925 ESAMRIIAGTAANMGIDI 942
           ESA+RII GTA NMGI +
Sbjct: 122 ESAIRIIEGTAKNMGIGV 139

This protein binds directly to 23S ribosomal RNA.

Guillardia theta (taxid: 55529)

>sp|Q31QK3|RL11_SYNE7 50S ribosomal protein L11 OS=Synechococcus elongatus (strain PCC 7942) GN=rplK PE=3 SV=1

 Score =  209 bits (532), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 101/138 (73%), Positives = 116/138 (84%)

Query: 805 AKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVY 864
           AKKV+ LIKLAL AGKA PAPPVGPALG  GVNIMAFCK+YNART DK G VIPVEI+V+
Sbjct: 2   AKKVVALIKLALPAGKANPAPPVGPALGQHGVNIMAFCKEYNARTQDKVGLVIPVEISVF 61

Query: 865 DDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSI 924
           +DRSFTFILKTPPASVL+ KAAG+E+GS +P + KVGKIT  QLR IA  KLPDLN  ++
Sbjct: 62  EDRSFTFILKTPPASVLIAKAAGIERGSGNPNKTKVGKITTAQLREIAETKLPDLNTKNV 121

Query: 925 ESAMRIIAGTAANMGIDI 942
           E+AMRI+ GTA NMG+ I
Sbjct: 122 EAAMRIVEGTARNMGVTI 139

This protein binds directly to 23S ribosomal RNA.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	954
224117756	786	predicted protein [Populus trichocarpa]	0.745	0.904	0.654	0.0
255555807	752	Cucumisin precursor, putative [Ricinus c	0.722	0.916	0.696	0.0
359473980	787	PREDICTED: subtilisin-like protease [Vit	0.731	0.886	0.672	0.0
297742466	737	unnamed protein product [Vitis vinifera]	0.709	0.918	0.68	0.0
224056691	740	predicted protein [Populus trichocarpa]	0.710	0.916	0.672	0.0
356510921	774	PREDICTED: subtilisin-like protease SDD1	0.726	0.895	0.661	0.0
357518665	797	Subtilisin-like protease [Medicago trunc	0.747	0.894	0.626	0.0
359473978	782	PREDICTED: subtilisin-like protease-like	0.742	0.905	0.521	0.0
255555803	778	Cucumisin precursor, putative [Ricinus c	0.738	0.906	0.523	0.0
224117768	770	predicted protein [Populus trichocarpa]	0.737	0.914	0.521	0.0

>gi|224117756|ref|XP_002317660.1| predicted protein [Populus trichocarpa] gi|222860725|gb|EEE98272.1| predicted protein [Populus trichocarpa]

 Score = 1020 bits (2637), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/764 (65%), Positives = 591/764 (77%), Gaps = 53/764 (6%)

Query: 5   KTQLLRILVVILLQHHLQISLTLVGATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGS 64
           K     I+ + L+QH L +S+    AT  VHIVYMGEK++EDP    K H+  LST+LGS
Sbjct: 13  KNHFFTIIAIFLIQHQLHVSVKCAEATKKVHIVYMGEKEHEDPAITKKIHYEMLSTLLGS 72

Query: 65  KEAAKHSILYSYKHGFSGFAARLTKTQAEKIA--------ELPGVVQVIPNGILKLHTTR 116
           KEAA+ SILYSY+HGFSGFAARLT++QAE IA        + PGVVQVIPNGI KLHTTR
Sbjct: 73  KEAARSSILYSYRHGFSGFAARLTESQAEDIAGTIIVDNSKFPGVVQVIPNGIHKLHTTR 132

Query: 117 SWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGIC 176
           SWEF+GL+++ S +NL  +SNMG+GTIIG+ID+GVWPES+SF D+GMG  PVP HWKGIC
Sbjct: 133 SWEFIGLNHH-SPQNLLRQSNMGQGTIIGVIDSGVWPESKSFHDEGMG--PVPSHWKGIC 189

Query: 177 QKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTD------------------------ 212
           Q+GE FNSSNCNRK+IGARWF+KG  D +  +T                           
Sbjct: 190 QQGESFNSSNCNRKIIGARWFVKGFQDQLPFNTTESREFMSPRDGEGHGSHTASTAAGNF 249

Query: 213 ------EGLAAGLARGGAPLAHLAIYKACWDI---GCTDADVLKAFDKAIHDGVDVLSVS 263
                 +GLAAGLARGGAPLAHLAIYK CW+I   GCTDAD+LKAFDKAIHDGVD+LSVS
Sbjct: 250 VEKVSYKGLAAGLARGGAPLAHLAIYKVCWNIEDGGCTDADLLKAFDKAIHDGVDILSVS 309

Query: 264 IGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTI 323
           IGN IPLFSY+D R+SIAIGSFHA   GI+V+ SAGNDGP++QT+ NTAPW+ITV A+TI
Sbjct: 310 IGNNIPLFSYVDMRNSIAIGSFHATLNGISVICSAGNDGPISQTVENTAPWLITVAASTI 369

Query: 324 DRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDP--DSANDCRQGSLNATL 381
           DR FPTAITLGN++ LWGQSI  G+ +HGF  LTYSERI  +P  DSA DC+ GSLNATL
Sbjct: 370 DRTFPTAITLGNNKTLWGQSITTGQHNHGFASLTYSERIPLNPMVDSAKDCQPGSLNATL 429

Query: 382 AAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQ 441
           AAGKIILC S  +TQD+ SA+ SV +AGGVGLI+ QFH DG++ C  IPC+KV+YEVGTQ
Sbjct: 430 AAGKIILCLSESNTQDMFSASTSVFEAGGVGLIFVQFHLDGMELCK-IPCVKVDYEVGTQ 488

Query: 442 ILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSA 501
           I+SYIR+ARSP AKLS P+TV+G  VSPR+ASFSSRGP+S+SP VLKPDI APGVDIL+A
Sbjct: 489 IVSYIRKARSPTAKLSFPKTVVGKRVSPRLASFSSRGPSSISPEVLKPDIAAPGVDILAA 548

Query: 502 YPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGM 561
           + P     +  YA LSGTSM+CPHV GI ALIKSLH +WSPAAIRSALVTTASQTGTDGM
Sbjct: 549 HRPANKDQVDSYAFLSGTSMACPHVTGIVALIKSLHPNWSPAAIRSALVTTASQTGTDGM 608

Query: 562 NIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTK 621
            IFEEGSTRKEADPFDIGGGHVNP KA+ PGLVYD   ++YIQFLC MG++ +S++RLT 
Sbjct: 609 KIFEEGSTRKEADPFDIGGGHVNPEKAVYPGLVYDTNTKEYIQFLCSMGYSSSSVTRLTN 668

Query: 622 SKINCLKNNHLALDLNLPSITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMT 681
           + INC+K  +  L+LNLPSITIPNL    +  V RKVTNVG +NS Y+A+V+AP+G+NM 
Sbjct: 669 ATINCMKKANTRLNLNLPSITIPNL--KTSAKVARKVTNVGNVNSVYKAIVQAPFGINMR 726

Query: 682 VEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTD 725
           VEP  +SFNM  KILS+ VTFFS  KV       YRFGSLTWTD
Sbjct: 727 VEPTTLSFNMNNKILSYEVTFFSTQKVQ----GGYRFGSLTWTD 766

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555807|ref|XP_002518939.1| Cucumisin precursor, putative [Ricinus communis] gi|223541926|gb|EEF43472.1| Cucumisin precursor, putative [Ricinus communis]

 Score = 1012 bits (2617), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/738 (69%), Positives = 586/738 (79%), Gaps = 49/738 (6%)

Query: 28  VGATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARL 87
           V AT  VHIVYMGEKKYEDP    KSHH+ LST+LGSKEAAK SILYSYKHGFSGFAARL
Sbjct: 3   VEATMKVHIVYMGEKKYEDPATTKKSHHQMLSTLLGSKEAAKSSILYSYKHGFSGFAARL 62

Query: 88  TKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGII 147
           T+ QA KIAE PGV+QVIPN I KLHTTRSWEF+GL+++ SSKNL  +SNMGEGTIIG+I
Sbjct: 63  TEAQAVKIAEFPGVIQVIPNRIHKLHTTRSWEFIGLNHH-SSKNLLAQSNMGEGTIIGVI 121

Query: 148 DTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINA 207
           D+G+WPES+SF+D+GMG  PVP HWKGICQ+GE FN SNCNRKLIGARWFIKG  + I  
Sbjct: 122 DSGIWPESKSFNDRGMG--PVPSHWKGICQEGECFNYSNCNRKLIGARWFIKGFREEIEK 179

Query: 208 STNTD--------------------------------EGLAAGLARGGAPLAHLAIYKAC 235
             NT                                 +GLA GLARGGAPLAHLA+YK C
Sbjct: 180 PVNTTNSTEFLSPRDGDGHGTHTASTAAGYFVENASYKGLATGLARGGAPLAHLAVYKVC 239

Query: 236 WDI---GCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGI 292
           W I   GCTDAD+LKAFDKAI DGVD+LSVSIGNEIPLFSY DQRD+IAIGSFHA A GI
Sbjct: 240 WGIDVGGCTDADLLKAFDKAIQDGVDILSVSIGNEIPLFSYADQRDAIAIGSFHATASGI 299

Query: 293 TVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHG 352
            V+ SAGNDGP +QTIVNTAPW+ITV ATTIDRAFPTAITLGN+  LWG+SID G+  HG
Sbjct: 300 PVICSAGNDGPTSQTIVNTAPWLITVAATTIDRAFPTAITLGNNSTLWGKSIDKGRNHHG 359

Query: 353 FTGLTYSERIAFDP--DSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGG 410
           F GLTYSERIA D   DSA DC+ GSLN TLAAGK+ILCFS+ DTQ+I SA+ SV QAGG
Sbjct: 360 FLGLTYSERIAVDSLDDSAKDCQLGSLNTTLAAGKVILCFSKTDTQNIVSASNSVFQAGG 419

Query: 411 VGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPR 470
           + LI+AQFH DGLDSC LIPCIKV+YEVGT ILSYIR+ R PIAKLS P+TVIG+  SPR
Sbjct: 420 IALIFAQFHNDGLDSCKLIPCIKVDYEVGTFILSYIRKTRYPIAKLSFPKTVIGNQASPR 479

Query: 471 VASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIA 530
           VASFSSRGP+S+SP VLKPDI APGVDIL+AY P  +++   Y LLSGTSM+CPHVAGIA
Sbjct: 480 VASFSSRGPSSISPLVLKPDIAAPGVDILAAYRPADNENRNTYTLLSGTSMACPHVAGIA 539

Query: 531 ALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN 590
           ALIKS+H +WSPAAIRSALVTTASQ GTDGMNI+ EG T K ADPFDIGGGHV P KA+N
Sbjct: 540 ALIKSVHPNWSPAAIRSALVTTASQIGTDGMNIYSEGPTSKPADPFDIGGGHVTPEKAVN 599

Query: 591 PGLVYDITVEDYIQFLCFMGHNDASISRLTKSK--INCLKN-NHLALDLNLPSITIPNLH 647
           PGLVYDI+ EDY+QFLC MG++ +SIS LTK+K  I C KN ++  L+LNLPS+TIPNL 
Sbjct: 600 PGLVYDISKEDYVQFLCSMGYSSSSISSLTKAKATIFCKKNSSNFKLNLNLPSMTIPNL- 658

Query: 648 NNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHK 707
               VTVTRKVTNVG I S Y+A VE P+G+ + +EP+V+ FN T K LSF+VTFFS+ K
Sbjct: 659 -KRKVTVTRKVTNVGHIKSVYKAKVEPPFGIRIRLEPKVLIFNSTTKNLSFKVTFFSSDK 717

Query: 708 VHPVPDAEYRFGSLTWTD 725
           V    + +YRFGSLTW+D
Sbjct: 718 V----EGDYRFGSLTWSD 731

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473980|ref|XP_002278450.2| PREDICTED: subtilisin-like protease [Vitis vinifera]

 Score = 1011 bits (2615), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/749 (67%), Positives = 583/749 (77%), Gaps = 51/749 (6%)

Query: 18  QHHLQISLTLVGA---TSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILY 74
           Q +   SL+ V     TSNV+IVYMGEKK+EDP  I K HH  LST+LGSKEAAK SILY
Sbjct: 27  QQYFHRSLSFVEGLETTSNVYIVYMGEKKHEDPATIKKCHHEMLSTLLGSKEAAKSSILY 86

Query: 75  SYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFMGL-HYYQSSKNLS 133
           SYKHGFSGFAA+LT++QAE IA  PGVVQVIPN I +LHTTRSW+F+GL H Y +  N+ 
Sbjct: 87  SYKHGFSGFAAKLTESQAEDIAGFPGVVQVIPNRIHRLHTTRSWDFLGLQHDYPT--NVL 144

Query: 134 TESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIG 193
           TE+N+G G IIG+ID+GVWPESESF D+GMG  P+P  WKGICQ GE+FNS+NCNRKLIG
Sbjct: 145 TETNLGRGVIIGVIDSGVWPESESFKDEGMG--PIPSRWKGICQHGERFNSTNCNRKLIG 202

Query: 194 ARWFIKGIMDMINASTN-TD-------------------------------EGLAAGLAR 221
           ARWF KGI   I    N TD                                GLA GLAR
Sbjct: 203 ARWFFKGIHQEIGKFMNITDNLEFLSPRDGIGHGTHTASTAAGYFVEKANYRGLATGLAR 262

Query: 222 GGAPLAHLAIYKACWDI---GCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRD 278
           GGAPLA LAIYKACW I    C+DAD+LKAFDKAIHDGVD+LS+S+GN+IPLFSY+DQRD
Sbjct: 263 GGAPLARLAIYKACWAIISGACSDADILKAFDKAIHDGVDILSLSVGNDIPLFSYVDQRD 322

Query: 279 SIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQV 338
           SIAI SFHAIAKGITVV SAGNDGP +QTI NTAPW+ITV ATTIDRAFPTAI LGN+Q 
Sbjct: 323 SIAIASFHAIAKGITVVCSAGNDGPFSQTIANTAPWLITVAATTIDRAFPTAIILGNNQT 382

Query: 339 LWGQSIDIGKVSHGFTGLTYSERIAFDP--DSANDCRQGSLNATLAAGKIILCFSRPDTQ 396
             GQSID GK   GFTGLTYSER+A DP  DSA DC+ GSLNATLAAGKIILCFS+ D Q
Sbjct: 383 FLGQSIDTGKHKLGFTGLTYSERVALDPKDDSAKDCQPGSLNATLAAGKIILCFSKSDKQ 442

Query: 397 DIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKL 456
           DI SA+ +V +AGG+GLI+AQF T  L+SC+LIPCIKVNYEVGTQIL+YIR+ARSP AKL
Sbjct: 443 DIISASGAVLEAGGIGLIFAQFPTSQLESCDLIPCIKVNYEVGTQILTYIRKARSPTAKL 502

Query: 457 SSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALL 516
             P+TV G   SP VA FSSRGP+SMSPAVLKPD+ APGV+IL+AY P+ +    G+A L
Sbjct: 503 KFPKTVTGKWASPHVAYFSSRGPSSMSPAVLKPDVAAPGVNILAAYSPVDAGTSNGFAFL 562

Query: 517 SGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPF 576
           SGTSM+CPHV+G+AALIKS H  WSPAAIRSALVT+ASQTGTDGM+I EEG TRK ADPF
Sbjct: 563 SGTSMACPHVSGLAALIKSAHPTWSPAAIRSALVTSASQTGTDGMDIIEEGPTRKAADPF 622

Query: 577 DIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDL 636
           DIGGGHVNPNKA+ PGL+Y+I++EDYIQFLC MG+++ SI RLTK+  NC + +H  L+L
Sbjct: 623 DIGGGHVNPNKALKPGLIYNISMEDYIQFLCSMGYSNPSIGRLTKTTTNCTRGSHFQLNL 682

Query: 637 NLPSITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKIL 696
           NLPSITIPNL   + VTV R VTNVG INS Y+A V+APYG+ M VEP ++SFN+T + L
Sbjct: 683 NLPSITIPNL--KKKVTVMRTVTNVGHINSVYKAEVQAPYGIKMAVEPHILSFNLTTQFL 740

Query: 697 SFRVTFFSNHKVHPVPDAEYRFGSLTWTD 725
            F+VTFFS   VH     +Y+FGSLTWTD
Sbjct: 741 HFKVTFFSTQTVH----GDYKFGSLTWTD 765

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742466|emb|CBI34615.3| unnamed protein product [Vitis vinifera]

 Score =  994 bits (2569), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/725 (68%), Positives = 569/725 (78%), Gaps = 48/725 (6%)

Query: 39  MGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAEL 98
           MGEKK+EDP  I K HH  LST+LGSKEAAK SILYSYKHGFSGFAA+LT++QAE IA  
Sbjct: 1   MGEKKHEDPATIKKCHHEMLSTLLGSKEAAKSSILYSYKHGFSGFAAKLTESQAEDIAGF 60

Query: 99  PGVVQVIPNGILKLHTTRSWEFMGL-HYYQSSKNLSTESNMGEGTIIGIIDTGVWPESES 157
           PGVVQVIPN I +LHTTRSW+F+GL H Y +  N+ TE+N+G G IIG+ID+GVWPESES
Sbjct: 61  PGVVQVIPNRIHRLHTTRSWDFLGLQHDYPT--NVLTETNLGRGVIIGVIDSGVWPESES 118

Query: 158 FSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTN-TD---- 212
           F D+GMG  P+P  WKGICQ GE+FNS+NCNRKLIGARWF KGI   I    N TD    
Sbjct: 119 FKDEGMG--PIPSRWKGICQHGERFNSTNCNRKLIGARWFFKGIHQEIGKFMNITDNLEF 176

Query: 213 ---------------------------EGLAAGLARGGAPLAHLAIYKACWDI---GCTD 242
                                       GLA GLARGGAPLA LAIYKACW I    C+D
Sbjct: 177 LSPRDGIGHGTHTASTAAGYFVEKANYRGLATGLARGGAPLARLAIYKACWAIISGACSD 236

Query: 243 ADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDG 302
           AD+LKAFDKAIHDGVD+LS+S+GN+IPLFSY+DQRDSIAI SFHAIAKGITVV SAGNDG
Sbjct: 237 ADILKAFDKAIHDGVDILSLSVGNDIPLFSYVDQRDSIAIASFHAIAKGITVVCSAGNDG 296

Query: 303 PVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERI 362
           P +QTI NTAPW+ITV ATTIDRAFPTAI LGN+Q   GQSID GK   GFTGLTYSER+
Sbjct: 297 PFSQTIANTAPWLITVAATTIDRAFPTAIILGNNQTFLGQSIDTGKHKLGFTGLTYSERV 356

Query: 363 AFDP--DSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHT 420
           A DP  DSA DC+ GSLNATLAAGKIILCFS+ D QDI SA+ +V +AGG+GLI+AQF T
Sbjct: 357 ALDPKDDSAKDCQPGSLNATLAAGKIILCFSKSDKQDIISASGAVLEAGGIGLIFAQFPT 416

Query: 421 DGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPN 480
             L+SC+LIPCIKVNYEVGTQIL+YIR+ARSP AKL  P+TV G   SP VA FSSRGP+
Sbjct: 417 SQLESCDLIPCIKVNYEVGTQILTYIRKARSPTAKLKFPKTVTGKWASPHVAYFSSRGPS 476

Query: 481 SMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDW 540
           SMSPAVLKPD+ APGV+IL+AY P+ +    G+A LSGTSM+CPHV+G+AALIKS H  W
Sbjct: 477 SMSPAVLKPDVAAPGVNILAAYSPVDAGTSNGFAFLSGTSMACPHVSGLAALIKSAHPTW 536

Query: 541 SPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVE 600
           SPAAIRSALVT+ASQTGTDGM+I EEG TRK ADPFDIGGGHVNPNKA+ PGL+Y+I++E
Sbjct: 537 SPAAIRSALVTSASQTGTDGMDIIEEGPTRKAADPFDIGGGHVNPNKALKPGLIYNISME 596

Query: 601 DYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPSITIPNLHNNETVTVTRKVTN 660
           DYIQFLC MG+++ SI RLTK+  NC + +H  L+LNLPSITIPNL   + VTV R VTN
Sbjct: 597 DYIQFLCSMGYSNPSIGRLTKTTTNCTRGSHFQLNLNLPSITIPNL--KKKVTVMRTVTN 654

Query: 661 VGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGS 720
           VG INS Y+A V+APYG+ M VEP ++SFN+T + L F+VTFFS   VH     +Y+FGS
Sbjct: 655 VGHINSVYKAEVQAPYGIKMAVEPHILSFNLTTQFLHFKVTFFSTQTVH----GDYKFGS 710

Query: 721 LTWTD 725
           LTWTD
Sbjct: 711 LTWTD 715

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056691|ref|XP_002298975.1| predicted protein [Populus trichocarpa] gi|222846233|gb|EEE83780.1| predicted protein [Populus trichocarpa]

 Score =  993 bits (2567), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/730 (67%), Positives = 575/730 (78%), Gaps = 52/730 (7%)

Query: 39  MGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIA-- 96
           MGEK++EDP    K+H+  LST+LGSKEAA+ SILYSY+HGFSGFAAR+T++QA +IA  
Sbjct: 1   MGEKRHEDPATTKKTHYEMLSTLLGSKEAAQSSILYSYRHGFSGFAARITESQAAEIAGT 60

Query: 97  -------ELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDT 149
                  + PGVVQVIPNGI KLHTTRSWEF+GL ++ S +NL T+SNMG+GTIIG+ID+
Sbjct: 61  IISQNSIKFPGVVQVIPNGIHKLHTTRSWEFIGLKHH-SPQNLLTQSNMGQGTIIGVIDS 119

Query: 150 GVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAST 209
           GVWPES+SF D+GMG  PVP  WKGICQ+GE F   NCNRK+IGARWF+KG  D I+ +T
Sbjct: 120 GVWPESKSFHDEGMG--PVPSRWKGICQQGEHFKPYNCNRKIIGARWFVKGFQDQIHFNT 177

Query: 210 NTD------------------------------EGLAAGLARGGAPLAHLAIYKACWDI- 238
                                            +GLA GLARGGAPLAHLAIYK CW+I 
Sbjct: 178 TESREFMSPRDGDGHGTHTASTAAGNFVAKASYKGLATGLARGGAPLAHLAIYKVCWNIE 237

Query: 239 --GCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVS 296
             GCTDAD+LKAFDKAIHDGVD+LSVSIGN+IPLFSY D R+SIAIGSFHA +KGITVV 
Sbjct: 238 DGGCTDADILKAFDKAIHDGVDILSVSIGNDIPLFSYADMRNSIAIGSFHATSKGITVVC 297

Query: 297 SAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGL 356
           SAGNDGP++QT+ NTAPW+ TV A+TIDRAFPTAI LGN++ L GQSI IGK +H F GL
Sbjct: 298 SAGNDGPISQTVANTAPWLTTVAASTIDRAFPTAIILGNNKTLRGQSITIGKHTHRFAGL 357

Query: 357 TYSERIAFDPD-SANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIY 415
           TYSERIA DP  S+ DC+ GSLN TLAAGKIILC S+ DTQD+ SA+ SV QAGGVGLIY
Sbjct: 358 TYSERIALDPMVSSQDCQPGSLNPTLAAGKIILCLSKSDTQDMFSASGSVFQAGGVGLIY 417

Query: 416 AQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFS 475
           AQFHTDG++ C  IPC+KV+YEVGTQILSYIR+ARSP AKLS P+TV+G   SPR+ASFS
Sbjct: 418 AQFHTDGIELCEWIPCVKVDYEVGTQILSYIRQARSPTAKLSFPKTVVGKRASPRLASFS 477

Query: 476 SRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKS 535
           SRGP+S++P VLKPDI APGVDIL+AY P        Y  LSGTSM+CPHV+GI ALIKS
Sbjct: 478 SRGPSSITPEVLKPDIAAPGVDILAAYTPANKDQGDSYEFLSGTSMACPHVSGIVALIKS 537

Query: 536 LHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVY 595
           LH +WSPAAIRSALVTTASQTGTDGM IFEEGSTRKEADPFD+GGGHVNP KA  PGLVY
Sbjct: 538 LHPNWSPAAIRSALVTTASQTGTDGMKIFEEGSTRKEADPFDMGGGHVNPEKAAYPGLVY 597

Query: 596 DITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPSITIPNLHNNETVTVT 655
           D T E+YIQ+LC +G++ +SI+RLT +KINC+K  +  L+LNLPSITIPNL   + VTVT
Sbjct: 598 DTTTEEYIQYLCSIGYSSSSITRLTNTKINCVKKTNTRLNLNLPSITIPNL--KKKVTVT 655

Query: 656 RKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAE 715
           RKVTNVG +NS Y+A+V+AP G++M VEP+ +SFN   KILSFRVTF S+ KV      E
Sbjct: 656 RKVTNVGNVNSVYKAIVQAPIGISMAVEPKTLSFNRINKILSFRVTFLSSQKVQ----GE 711

Query: 716 YRFGSLTWTD 725
           YRFGSLTWTD
Sbjct: 712 YRFGSLTWTD 721

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510921|ref|XP_003524182.1| PREDICTED: subtilisin-like protease SDD1-like [Glycine max]

 Score =  988 bits (2555), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/739 (66%), Positives = 573/739 (77%), Gaps = 46/739 (6%)

Query: 24  SLTLVGATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGF 83
           SL      S+VHIVYMG+K Y++P      HH+ LS++LGSKEAAK+SILYSYKHGFSGF
Sbjct: 28  SLVNSAEASSVHIVYMGDKIYQNPQTTKMYHHKMLSSLLGSKEAAKNSILYSYKHGFSGF 87

Query: 84  AARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTESNMGEGTI 143
           AARLTK QAE IA+ PGVV VIPNGI KLHTTRSW+FMG+H+  +SK   ++SN+GEGTI
Sbjct: 88  AARLTKYQAEAIAKFPGVVSVIPNGIHKLHTTRSWDFMGVHH-STSKIAFSDSNLGEGTI 146

Query: 144 IGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMD 203
           IG+IDTG+WPES SF+D+ MGQ  +P  WKGICQ G+ FNS+NCN+K+IGARWF+KGI D
Sbjct: 147 IGVIDTGIWPESPSFNDEAMGQ--IPSRWKGICQGGKHFNSTNCNKKIIGARWFMKGISD 204

Query: 204 MIN---ASTNTDE-----------------------------GLAAGLARGGAPLAHLAI 231
                    N+DE                             GLA+GLARGGAPLAHLAI
Sbjct: 205 QTKKLLQGNNSDEYLSARDAIGHGTHTASTAAGYFVGNANYRGLASGLARGGAPLAHLAI 264

Query: 232 YKACWD--IG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAI 288
           YKACWD  IG CTDAD+LKAFDKAIHDGVDVL+VS+G  IPLFSY+DQRDS+AIGSFHA 
Sbjct: 265 YKACWDFPIGDCTDADILKAFDKAIHDGVDVLTVSLGFAIPLFSYVDQRDSLAIGSFHAT 324

Query: 289 AKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGK 348
           +KGITVV SAGN GPV+QT+ NTAPWIITVGATTIDRAFP AITLGN++ +WGQSID+GK
Sbjct: 325 SKGITVVCSAGNSGPVSQTVTNTAPWIITVGATTIDRAFPAAITLGNNRTVWGQSIDMGK 384

Query: 349 VSHGFTGLTYSERIAFDPDS--ANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVT 406
            + G  GLTYSERIA DP    A DC+ GSLNAT+AAGKI+LCFS  D QDI SA+++V 
Sbjct: 385 HNLGSVGLTYSERIAVDPSDNLAKDCQSGSLNATMAAGKIVLCFSVSDQQDIVSASLTVK 444

Query: 407 QAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDL 466
           +AGGVGL+YAQ+H DGL+ C   PCIKV+YEVGTQ L+YIRR+R P A LS P+TVIG  
Sbjct: 445 EAGGVGLVYAQYHEDGLNQCGSFPCIKVDYEVGTQTLTYIRRSRFPTASLSFPKTVIGKW 504

Query: 467 VSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHV 526
            SPRVASFSSRGP+SMSP VLKPDI APGVDIL+A+PP G+    G+A LSGTSMSCPHV
Sbjct: 505 TSPRVASFSSRGPSSMSPTVLKPDIAAPGVDILAAFPPKGTTRSSGFAFLSGTSMSCPHV 564

Query: 527 AGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPN 586
           AGIAALIKS H  WSPAAIRSALVTTASQTGTDG  I EEGST K ADPFDIGGGHV+PN
Sbjct: 565 AGIAALIKSKHPTWSPAAIRSALVTTASQTGTDGSLISEEGSTHKAADPFDIGGGHVDPN 624

Query: 587 KAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPSITIPNL 646
           KAM+PGL+YDIT EDY+QFLC MGH+ ASIS++TK+  +C K  H  L+LNLPSI +PNL
Sbjct: 625 KAMDPGLIYDITTEDYVQFLCSMGHSSASISKVTKTTTSCKKGKHQTLNLNLPSILVPNL 684

Query: 647 HNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNH 706
                 TV R VTNVG I + Y+AL++ PYG+ + VEP+ +SFN   +IL+F V+F S  
Sbjct: 685 --KRVATVMRTVTNVGNITAVYKALLKVPYGIKVRVEPQTLSFNSDARILNFSVSFLSTQ 742

Query: 707 KVHPVPDAEYRFGSLTWTD 725
           K H     +Y+FGSLTWTD
Sbjct: 743 KFH----GDYKFGSLTWTD 757

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518665|ref|XP_003629621.1| Subtilisin-like protease [Medicago truncatula] gi|355523643|gb|AET04097.1| Subtilisin-like protease [Medicago truncatula]

 Score =  956 bits (2470), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/779 (62%), Positives = 587/779 (75%), Gaps = 66/779 (8%)

Query: 3   ARKTQLLRILVVILLQHHLQISLTLVGATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVL 62
           ARK QLL    ++LLQ  L I       +S+VHIVYMG+K Y +P    K HH+ LS++L
Sbjct: 11  ARKVQLLVTSALLLLQSFLIIPEIFAEESSSVHIVYMGDKIYHNPETAKKYHHKMLSSLL 70

Query: 63  GSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFMG 122
           GSKE AK+S+LYSYKHGFSGFAAR+TK+QAE IA+ P VV VIPNGI KLHTTRSW+F+G
Sbjct: 71  GSKEDAKNSLLYSYKHGFSGFAARMTKSQAEDIAKFPEVVSVIPNGIHKLHTTRSWDFIG 130

Query: 123 LHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKF 182
           +H+  SSK + TESN+G+GTIIG+IDTG+WPES SF+D+ MG+  +P  WKG+CQ GEKF
Sbjct: 131 VHH-PSSKTVFTESNLGQGTIIGVIDTGIWPESASFNDEAMGK--IPSKWKGVCQVGEKF 187

Query: 183 NSSNCNRKLIGARWFIKGIMD----MINASTNTDE------------------------- 213
           NS+NCN+K+IGARWF+KGI D    ++  + +T E                         
Sbjct: 188 NSTNCNKKIIGARWFLKGITDHTKNLVLGNNDTTEYLSARDAIGHGTHTASTAAGYFVEN 247

Query: 214 ----GLAAGLARGGAPLAHLAIYKACWDI---GCTDADVLKAFDKAIHDGVDVLSVSIGN 266
               GLA+GLARGGAPLAHLAIYKACWD+    CTDAD+LKAFD AIHDGVDVL+VS+G 
Sbjct: 248 ANYRGLASGLARGGAPLAHLAIYKACWDVPVGHCTDADILKAFDMAIHDGVDVLTVSLGI 307

Query: 267 EIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRA 326
            IPLFSY DQRD+IAIGSFHA +KGITVVSSAGN GP++QT+ NTAPW+ITV ATTIDR 
Sbjct: 308 GIPLFSYADQRDTIAIGSFHATSKGITVVSSAGNSGPISQTVSNTAPWLITVAATTIDRT 367

Query: 327 FPTAITLGNHQVLW----------GQSIDIGKVSHGFTGLTYSERIAFDP--DSANDCRQ 374
           FPTAITLGN+  LW          GQSID GK + GF GLTYSERIA DP  D A DC+ 
Sbjct: 368 FPTAITLGNNLTLWVGYNHFCIELGQSIDNGKHALGFVGLTYSERIARDPSDDLAKDCQS 427

Query: 375 GSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKV 434
           GSLN T+AAGKI+LCFS  D QDI SAA+SV +AGGVGLIYAQ H DGL+ C ++PCIKV
Sbjct: 428 GSLNETMAAGKIVLCFSVSDQQDIVSAALSVKEAGGVGLIYAQRHEDGLNECGILPCIKV 487

Query: 435 NYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAP 494
           +YE GT++L+YIRRAR P A+LS P+TVIG  +SPRVASFSSRGP+++SP VLKPDI AP
Sbjct: 488 DYEAGTELLTYIRRARFPTARLSFPKTVIGKWISPRVASFSSRGPSTLSPTVLKPDIAAP 547

Query: 495 GVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTT-- 552
           GVDIL+A+PP GSK   G+  LSGTSMSCPHVAGIAALIKS H  WSPAAIRSALVTT  
Sbjct: 548 GVDILAAFPPKGSKKSSGFIFLSGTSMSCPHVAGIAALIKSKHPTWSPAAIRSALVTTVS 607

Query: 553 -----ASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLC 607
                ASQ+GTDG  +  EGST K ADPFD+GGGHV+PNKA+N GL+Y+IT EDYI FLC
Sbjct: 608 TLKSAASQSGTDG-GLISEGSTNKAADPFDMGGGHVDPNKAINAGLIYNITTEDYIHFLC 666

Query: 608 FMGHNDASISRLTKSKINCLKNNHLA-LDLNLPSITIPNLHNNETVTVTRKVTNVGQINS 666
            MGHN ASI ++TK+  +C K    A L+LNLPSI+IPNL  +   TV R +TNVG IN 
Sbjct: 667 SMGHNTASIRKVTKTTTSCNKQKRQALLNLNLPSISIPNLKRD--TTVMRTLTNVGNINV 724

Query: 667 AYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTD 725
            Y+A+V++PYG+ + VEP+++ FN   K+L+F V+F S  K+H     +YRFGSLTWTD
Sbjct: 725 VYKAIVKSPYGIKVRVEPQILKFNSENKVLTFNVSFISTQKLH----GDYRFGSLTWTD 779

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473978|ref|XP_002278574.2| PREDICTED: subtilisin-like protease-like [Vitis vinifera]

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/757 (52%), Positives = 525/757 (69%), Gaps = 49/757 (6%)

Query: 8   LLRILVVILLQHHLQISLTL-VGATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKE 66
           +L + +V LL   L   ++L +   + VHIVY+GE+++ DP  +  SHH  L++++GSKE
Sbjct: 13  VLLVDIVFLLHFRLIFDVSLSLHPKTQVHIVYLGERQHNDPELVRDSHHDMLASIVGSKE 72

Query: 67  AAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFMGLHYY 126
            A   ++YSYKHGFSGFAA+LT++QA++IAELPGV++VIPN + +L TTRSW+++GL + 
Sbjct: 73  VASELMVYSYKHGFSGFAAKLTESQAQRIAELPGVLRVIPNSLHQLQTTRSWDYLGLSF- 131

Query: 127 QSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSS- 185
           QS KN+   SNMG+G IIG++DTG+WPES+SF+D+G G  P+P  WKG+C+ G++FNS+ 
Sbjct: 132 QSPKNILHSSNMGDGVIIGVLDTGIWPESKSFNDEGFG--PIPSQWKGVCESGQQFNSTM 189

Query: 186 NCNRKLIGARWFIKGIM----DMINASTNTD----------------------------E 213
           +CNRK+IGARWF+ G +      +N S N +                            +
Sbjct: 190 HCNRKVIGARWFVNGFLAEYGQPLNTSGNQEFLSPRDANGHGTHTSSTAGGSFVGNVSYK 249

Query: 214 GLAAGLARGGAPLAHLAIYKACWDI---GCTDADVLKAFDKAIHDGVDVLSVSIGNEIPL 270
           GLA G  RGGAP A LAIYK CW++    C+ AD+LKAFD+AI+DGV VLS+SIG+ IPL
Sbjct: 250 GLALGTVRGGAPHARLAIYKVCWNVLGGQCSSADILKAFDEAINDGVHVLSLSIGSSIPL 309

Query: 271 FSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTA 330
           FS ID+RD IA GSFHA+AKGITVV  A NDGP AQT+ NTAPWI+TV A+T+DRAFPT 
Sbjct: 310 FSDIDERDGIATGSFHAVAKGITVVCGASNDGPQAQTVQNTAPWILTVAASTMDRAFPTP 369

Query: 331 ITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCF 390
           ITLGN++ L GQ++  GK + GF+GL Y E      +SA  C   SL+ T  AGK++LCF
Sbjct: 370 ITLGNNKTLLGQALFTGKET-GFSGLVYPEVSGLALNSAGQCEALSLDQTSVAGKVVLCF 428

Query: 391 -SRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSC-NLIPCIKVNYEVGTQILSYIRR 448
            S      + SA+  V  AGGVG+I A+   D L +C N  PC++V+YE+GT+IL YIR 
Sbjct: 429 TSTVRRATLISASSDVQAAGGVGVIIAKNPGDNLAACSNDFPCVEVDYEIGTRILYYIRS 488

Query: 449 ARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSK 508
            R P+  LS  +T +G+ V  +VA FSSRGPNS++PA+LKPDI APGV+IL+A  P+   
Sbjct: 489 TRLPVVNLSPSKTFVGEAVLAKVAYFSSRGPNSIAPAILKPDITAPGVNILAATGPLNRV 548

Query: 509 DIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGS 568
              GYA+LSGTSM+ PHV+G+ AL+K+LH DWSPAAI+SALVTTA + G  G+ IF EG 
Sbjct: 549 MDGGYAMLSGTSMATPHVSGVVALLKALHPDWSPAAIKSALVTTAWRNGPSGLPIFAEGF 608

Query: 569 TRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLK 628
            +K ADPFD GGG VNPN A +PGLVYD+   D+I +LC +G+N+++IS+LT   I C  
Sbjct: 609 PKKLADPFDFGGGIVNPNGATDPGLVYDVGATDHIYYLCAVGYNNSAISQLTGQSIVCPS 668

Query: 629 NNHLALDLNLPSITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVIS 688
                LD+NLPSITIPNL N  + T+TR VTNVG   S Y  +++ P GV +TV P+V+ 
Sbjct: 669 ERPSILDVNLPSITIPNLRN--STTLTRTVTNVGAPESIYRVVIQPPIGVVITVNPDVLV 726

Query: 689 FNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTD 725
           FN   K ++F+VT  S H V    +  Y FGSLTWTD
Sbjct: 727 FNSMTKSITFKVTVSSTHHV----NTGYYFGSLTWTD 759

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555803|ref|XP_002518937.1| Cucumisin precursor, putative [Ricinus communis] gi|223541924|gb|EEF43470.1| Cucumisin precursor, putative [Ricinus communis]

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/756 (52%), Positives = 522/756 (69%), Gaps = 51/756 (6%)

Query: 8   LLRILVVILLQHHLQISLTLVGATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEA 67
           L+ +LV++  Q  L   +T V ATSNVHIVY+GEK+++D   IT SHH  L+ ++GSKE 
Sbjct: 13  LVNLLVLLCGQGVL---VTKVEATSNVHIVYLGEKQHDDLKLITDSHHDMLANIVGSKEL 69

Query: 68  AKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFMGLHYYQ 127
           A   ++YSYKHGFSGFAA+LT++QA+K++ELPGVV+VIPN + KL TTRSW F+GL  + 
Sbjct: 70  ASELMVYSYKHGFSGFAAKLTESQAQKLSELPGVVRVIPNSLHKLQTTRSWNFLGLSSH- 128

Query: 128 SSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSS-N 186
           S  N    S+MG+G IIG+ DTG+WPES++FSD+G+G  P+P HWKG+C  G +FN + +
Sbjct: 129 SPTNALHNSSMGDGVIIGVFDTGIWPESKAFSDEGLG--PIPSHWKGVCISGGRFNPTLH 186

Query: 187 CNRKLIGARWFIKGIMDMINASTNTD--------------------------------EG 214
           CN+K+IGARW+I G +       NT                                 +G
Sbjct: 187 CNKKIIGARWYIDGFLAEYGKPINTSGDLEFLSARDANGHGTHTASTAAGAFVSNVSYKG 246

Query: 215 LAAGLARGGAPLAHLAIYKACWDI---GCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLF 271
           LA G+ RGGAP A LAIYK CWD+    C+ AD+LKA D+AIHDGVDV+S+SIG+ IPLF
Sbjct: 247 LAPGIIRGGAPRARLAIYKVCWDVLGGQCSSADILKAIDEAIHDGVDVMSLSIGSSIPLF 306

Query: 272 SYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAI 331
           S ID+RD IA GSFHA+A+GITVV +A NDGP AQT+ NTAPWI+TV A+T+DRAFPT I
Sbjct: 307 SDIDERDGIATGSFHAVARGITVVCAAANDGPSAQTVQNTAPWILTVAASTMDRAFPTPI 366

Query: 332 TLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCF- 390
            LGN++   GQ+   GK   GF GL Y +    DP++A  C+  SLNATL AGK++LCF 
Sbjct: 367 ILGNNRTFLGQATFTGK-EIGFRGLFYPQASGLDPNAAGACQSLSLNATLVAGKVVLCFT 425

Query: 391 SRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCN-LIPCIKVNYEVGTQILSYIRRA 449
           S      + SAA  V +AGGVGLI A+  +D L  CN   PCI+V++E+GT+IL YIR  
Sbjct: 426 STARRSSVTSAAEVVKEAGGVGLIVAKNPSDALYPCNDNFPCIEVDFEIGTRILFYIRST 485

Query: 450 RSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKD 509
           R P  KL   +T++G  +  +VA FSSRGPNS++PA+LKPDI APGV+IL+A  P+   +
Sbjct: 486 RFPQVKLRPSKTIVGRPLLAKVAYFSSRGPNSIAPAILKPDITAPGVNILAATSPLDPFE 545

Query: 510 IQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGST 569
             GY + SGTSMS PH++GI AL+K+LH DWSPAAI+SALVTTA +    G  IF EGS+
Sbjct: 546 DNGYTMHSGTSMSAPHISGIVALLKALHPDWSPAAIKSALVTTAWRNHPSGYPIFAEGSS 605

Query: 570 RKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKN 629
           +K A+PFDIGGG  NPN A NPGLVYD+   DY+ +LC MG+N  +IS LT   + C KN
Sbjct: 606 QKLANPFDIGGGIANPNGAANPGLVYDMGTPDYVHYLCAMGYNHTAISSLTGQPVVCPKN 665

Query: 630 NHLALDLNLPSITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISF 689
               LD+NLPSITIPNL   ++VT+TR VTNVG +NS Y  ++E P+G  ++V+P+ + F
Sbjct: 666 ETSILDINLPSITIPNLR--KSVTLTRTVTNVGALNSIYRVVIEPPFGTYISVKPDSLVF 723

Query: 690 NMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTD 725
           +   K ++F VT  + ++V    +  Y FGSL+WT+
Sbjct: 724 SRKTKKITFTVTVTAANQV----NTGYYFGSLSWTN 755

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117768|ref|XP_002317663.1| predicted protein [Populus trichocarpa] gi|222860728|gb|EEE98275.1| predicted protein [Populus trichocarpa]

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/751 (52%), Positives = 515/751 (68%), Gaps = 47/751 (6%)

Query: 12  LVVILLQHHLQISLTLVGATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHS 71
           LV +L      + +T V ATS+VHIVY+G K+++D +  T SHH  L++V+GSKE A   
Sbjct: 10  LVCLLFLWGQGMLMTKVEATSSVHIVYLGGKQHDDHILTTNSHHDMLASVVGSKEMATEL 69

Query: 72  ILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSSKN 131
           ++YSYKHGFSGFAA+LT++QA+K++ELPGV++VIPN + +L TTRSW+F+GL  + S  N
Sbjct: 70  MVYSYKHGFSGFAAKLTESQAQKVSELPGVIRVIPNSLHRLQTTRSWDFLGLSSH-SPVN 128

Query: 132 LSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSN-CNRK 190
              +SNMG+G IIG++DTG+WPES++FSDKG+G  P+P HWKG+C+ G  F + N CNRK
Sbjct: 129 TLHKSNMGDGVIIGVLDTGIWPESKAFSDKGLG--PIPSHWKGVCESGTGFEAKNHCNRK 186

Query: 191 LIGARWFIKGIMDMINASTNTDE--------------------------------GLAAG 218
           +IGARWF+ G +       NT E                                GL  G
Sbjct: 187 IIGARWFVDGFLAEYGQPLNTSENREFFSPRDANGHGTHTASTAAGNFVDNVSYRGLGLG 246

Query: 219 LARGGAPLAHLAIYKACWDI---GCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYID 275
             RGGAP A LAIYK CW++    C  AD+LKAFD+AIHDGVDVLS+SIG+ IPLFS ID
Sbjct: 247 TIRGGAPRAQLAIYKVCWNVLGGQCASADILKAFDEAIHDGVDVLSLSIGSSIPLFSDID 306

Query: 276 QRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGN 335
           +RDSIA GSFHA+AKGITVV  A NDGP AQT+ NTAPWI+TV A+++DRAFPT ITLGN
Sbjct: 307 ERDSIATGSFHAVAKGITVVCGASNDGPSAQTVQNTAPWILTVAASSMDRAFPTPITLGN 366

Query: 336 HQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDT 395
           ++   G+ +  G  + GF  L Y      DP+SA  C+   ++A+  AGK++LCF+    
Sbjct: 367 NKTFRGKGLYSGNDT-GFRNLFYPVAKGLDPNSAGVCQSLLVDASTVAGKVVLCFASMTP 425

Query: 396 QDIQSAAISVTQAGGVGLIYAQFHTDGLDSC-NLIPCIKVNYEVGTQILSYIRRARSPIA 454
             ++SAA  V +AGG GLI A+  +D L  C +  PC +V+YE+GTQIL YIR  RSP+ 
Sbjct: 426 GAVRSAAEVVKEAGGAGLIVAKNPSDALYPCTDGFPCTEVDYEIGTQILFYIRSTRSPVV 485

Query: 455 KLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYA 514
           KLS  +T++G  V  +VA FSSRGPNS++PA+LKPDI APGV+IL+A  P+      GY 
Sbjct: 486 KLSPSKTIVGKPVLAKVAYFSSRGPNSIAPAILKPDIAAPGVNILAATSPLRRSQEGGYT 545

Query: 515 LLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEAD 574
           +LSGTSM+ PHV+GI AL+K++H DWSPAAI+S++VTTA +    G  IF EGS +K AD
Sbjct: 546 MLSGTSMATPHVSGIVALLKAVHPDWSPAAIKSSIVTTAWRNNPSGFPIFAEGSPQKLAD 605

Query: 575 PFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLAL 634
            FD GGG VNPN A  PGLVYD+  EDYI +LC M +N+ +ISRLT +   C       L
Sbjct: 606 TFDYGGGIVNPNGAAYPGLVYDMGTEDYINYLCAMNYNNTAISRLTGNLTVCPIEEPSIL 665

Query: 635 DLNLPSITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIK 694
           ++NLPSITIPNL N  ++T+TR VTNVG  NS Y  ++E P+G +++V+P V+ FN   K
Sbjct: 666 NINLPSITIPNLRN--SITLTRTVTNVGASNSIYRVMIEPPFGTSVSVKPNVLVFNHKTK 723

Query: 695 ILSFRVTFFSNHKVHPVPDAEYRFGSLTWTD 725
            ++F VT  + H+V    + EY FGSLTWTD
Sbjct: 724 KITFTVTVTTAHQV----NTEYSFGSLTWTD 750

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	954
TAIR|locus:2127666	775	AT4G10540 "AT4G10540" [Arabido	0.511	0.629	0.512	1.9e-179
TAIR|locus:2037935	777	SBT3.3 "AT1G32960" [Arabidopsi	0.511	0.628	0.512	1.7e-178
TAIR|locus:2037895	774	SBT3.5 "AT1G32940" [Arabidopsi	0.511	0.630	0.502	8.3e-177
UNIPROTKB|Q0J050	769	Os09g0530800 "Os09g0530800 pro	0.510	0.633	0.506	5.8e-176
TAIR|locus:2037915	773	AT1G32950 "AT1G32950" [Arabido	0.511	0.631	0.500	2e-175
TAIR|locus:2127706	756	AT4G10520 "AT4G10520" [Arabido	0.502	0.633	0.511	4.1e-175
TAIR|locus:2127696	765	AT4G10510 "AT4G10510" [Arabido	0.510	0.636	0.515	2e-173
TAIR|locus:2119008	772	AT4G21630 "AT4G21630" [Arabido	0.331	0.409	0.526	4.7e-158
TAIR|locus:2119018	733	AT4G21640 "AT4G21640" [Arabido	0.329	0.428	0.517	2.6e-157
TAIR|locus:2143014	762	AT5G11940 "AT5G11940" [Arabido	0.498	0.624	0.460	7.3e-152

TAIR|locus:2127666 AT4G10540 "AT4G10540" [Arabidopsis thaliana (taxid:3702)]

 Score = 1259 (448.2 bits), Expect = 1.9e-179, Sum P(2) = 1.9e-179
 Identities = 259/505 (51%), Positives = 339/505 (67%)

Query:   231 IYKACW-----DIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGS 284
             +YKACW     DI  C+ AD+LKA D+A+HDGVDVLS+SIG   P F   D R  IA G+
Sbjct:   255 MYKACWYLDRFDINTCSSADILKAMDEAMHDGVDVLSLSIGYRFPYFPETDVRAVIATGA 314

Query:   285 FHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSI 344
             FHA+ KGITVV S GN GP AQT+ NTAPWI+TV ATT+DR+FPT ITLGN++++ GQ++
Sbjct:   315 FHAVLKGITVVCSGGNSGPAAQTVGNTAPWILTVAATTLDRSFPTPITLGNNKLILGQAM 374

Query:   345 DIGKVSHGFTGLTYSERIAFDPDS-ANDCRQGSLNAT-LAAGKIILCFSRPDTQDIQSAA 402
               G    GFT L Y E      +S + DC     N+    AGK++LCF+        S+A
Sbjct:   375 YTGP-ELGFTSLVYPENPGNSNESFSGDCELLFFNSNHTMAGKVVLCFTTSTRYITVSSA 433

Query:   403 IS-VTQAGGVGLIYAQFHTDGLDSC-NLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPE 460
             +S V +AGG+G+I A+   D L  C +  PC+ V+YE+GT IL YIR    P+ K+   +
Sbjct:   434 VSYVKEAGGLGVIVARNPGDNLSPCEDDFPCVAVDYELGTDILLYIRSTGLPVVKIQPSK 493

Query:   461 TVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTS 520
             T++G  V  +VA FSSRGPNS+ PA+LKPDI APGV IL+A     + + +G+  LSGTS
Sbjct:   494 TLVGQPVGTKVADFSSRGPNSIEPAILKPDIAAPGVSILAATTTNKTFNDRGFIFLSGTS 553

Query:   521 MSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGG 580
             M+ P ++G+ AL+K+LHRDWSPAAIRSA+VTTA +T   G  IF EGS RK ADPFD GG
Sbjct:   554 MAAPTISGVVALLKALHRDWSPAAIRSAIVTTAWRTDPFGEQIFAEGSPRKLADPFDYGG 613

Query:   581 GHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPS 640
             G VNP KA  PGLVYD+ +EDY+ ++C +G+N+ SIS+L      C       LD NLPS
Sbjct:   614 GLVNPEKAAKPGLVYDLGLEDYVLYMCSVGYNETSISQLVGKGTVCSNPKPSVLDFNLPS 673

Query:   641 ITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRV 700
             ITIPNL   + VT+TR +TNVGQ+ S Y+ ++E P G+ +TV PE + FN T K +SF+V
Sbjct:   674 ITIPNL--KDEVTLTRTLTNVGQLESVYKVVIEPPIGIQVTVTPETLLFNSTTKRVSFKV 731

Query:   701 TFFSNHKVHPVPDAEYRFGSLTWTD 725
                + HK++      Y FGSLTW+D
Sbjct:   732 KVSTTHKIN----TGYFFGSLTWSD 752

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

TAIR|locus:2037935 SBT3.3 "AT1G32960" [Arabidopsis thaliana (taxid:3702)]

 Score = 1241 (441.9 bits), Expect = 1.7e-178, Sum P(2) = 1.7e-178
 Identities = 259/505 (51%), Positives = 335/505 (66%)

Query:   231 IYKACW------DIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGS 284
             +YKACW       + C+D+D++KA D+AIHDGVDVLS+S+  +IPL S  D RD  A G 
Sbjct:   257 MYKACWFHEELKGVTCSDSDIMKAIDEAIHDGVDVLSISLVGQIPLNSETDIRDEFATGL 316

Query:   285 FHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSI 344
             FHA+AKGI VV + GNDGP AQT+VN APWI+TV ATT+DR+FPT ITLGN++V+ GQ+ 
Sbjct:   317 FHAVAKGIVVVCAGGNDGPAAQTVVNIAPWILTVAATTLDRSFPTPITLGNNKVILGQAT 376

Query:   345 DIGKVSHGFTGLTYSERIAFDPDSAND-CRQGSLNATLA-AGKIILCFSRPDTQD-IQSA 401
               G    G T L Y E    + ++ +  C   +LN     A K++LCF+   T   I  A
Sbjct:   377 YTGP-ELGLTSLVYPENARNNNETFSGVCESLNLNPNYTMAMKVVLCFTASRTNAAISRA 435

Query:   402 AISVTQAGGVGLIYAQFHTDGLDSCNL-IPCIKVNYEVGTQILSYIRRARSPIAKLSSPE 460
             A  V  AGG+GLI ++     L  CN   PC+ V+YE+GT ILSYIR  RSP+ K+    
Sbjct:   436 ASFVKAAGGLGLIISRNPVYTLSPCNDDFPCVAVDYELGTDILSYIRSTRSPVVKIQRSR 495

Query:   461 TVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTS 520
             T+ G  V  +V +FSSRGPNSMSPA+LKPDI APGV IL+A  P  + ++ G+A+LSGTS
Sbjct:   496 TLSGQPVGTKVVNFSSRGPNSMSPAILKPDIAAPGVRILAATSPNDTLNVGGFAMLSGTS 555

Query:   521 MSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGG 580
             M+ P ++G+ AL+K+LH +WSPAA RSA+VTTA +T   G  IF EGS+RK +DPFD GG
Sbjct:   556 MATPVISGVIALLKALHPEWSPAAFRSAIVTTAWRTDPFGEQIFAEGSSRKVSDPFDYGG 615

Query:   581 GHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPS 640
             G VNP KA  PGL+YD+  +DYI +LC  G+ND+SIS+L      C       LD+NLPS
Sbjct:   616 GIVNPEKAAEPGLIYDMGPQDYILYLCSAGYNDSSISQLVGQITVCSNPKPSVLDVNLPS 675

Query:   641 ITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRV 700
             ITIPNL   + VT+TR VTNVG ++S Y+  VE P GV + V PE + FN     +SF V
Sbjct:   676 ITIPNL--KDEVTLTRTVTNVGLVDSVYKVSVEPPLGVRVVVTPETLVFNSKTISVSFTV 733

Query:   701 TFFSNHKVHPVPDAEYRFGSLTWTD 725
                + HK++      Y FGSLTWTD
Sbjct:   734 RVSTTHKIN----TGYYFGSLTWTD 754

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0048046 "apoplast" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

TAIR|locus:2037895 SBT3.5 "AT1G32940" [Arabidopsis thaliana (taxid:3702)]

 Score = 1246 (443.7 bits), Expect = 8.3e-177, Sum P(2) = 8.3e-177
 Identities = 254/505 (50%), Positives = 342/505 (67%)

Query:   231 IYKACW--D----IGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGS 284
             IYKACW  D    + C+ +D+LKA D+++HDGVDVLS+S+G +IPL+   D RD IA G+
Sbjct:   254 IYKACWYVDQLGAVACSSSDILKAMDESMHDGVDVLSLSLGAQIPLYPETDLRDRIATGA 313

Query:   285 FHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSI 344
             FHA+AKGI VV + GN GP AQT++NTAPWIITV ATT+DR+FPT ITLGN +V+ GQ++
Sbjct:   314 FHAVAKGIIVVCAGGNSGPAAQTVLNTAPWIITVAATTLDRSFPTPITLGNRKVILGQAL 373

Query:   345 DIGKVSHGFTGLTYSERIAFDPDSAND-CRQGSLNATLA-AGKIILCFSRPDTQDIQSAA 402
               G+   GFT L Y E   F  ++ +  C + +LN     AGK++LCF+        S A
Sbjct:   374 YTGQ-ELGFTSLVYPENAGFTNETFSGVCERLNLNPNRTMAGKVVLCFTTNTLFTAVSRA 432

Query:   403 IS-VTQAGGVGLIYAQFHTDGLDSC-NLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPE 460
              S V  AGG+G+I A+     L  C +  PC+ ++YE+GT +L YIR  RSP+ K+    
Sbjct:   433 ASYVKAAGGLGVIIARNPGYNLTPCRDDFPCVAIDYELGTDVLLYIRSTRSPVVKIQPSR 492

Query:   461 TVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTS 520
             T++G  V  +VA+FSSRGPNS+SPA+LKPDI APGV IL+A  P  +  + G+ +L+GTS
Sbjct:   493 TLVGQPVGTKVATFSSRGPNSISPAILKPDIGAPGVSILAATSPDSNSSVGGFDILAGTS 552

Query:   521 MSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGG 580
             M+ P VAG+ AL+K+LH +WSPAA RSA+VTTA +T   G  IF EGS+RK ADPFD GG
Sbjct:   553 MAAPVVAGVVALLKALHPNWSPAAFRSAIVTTAWRTDPFGEQIFAEGSSRKVADPFDYGG 612

Query:   581 GHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPS 640
             G VNP KA +PGL+YD+   DYI +LC  G+ND+SI++L  +   C       LD+NLPS
Sbjct:   613 GIVNPEKAADPGLIYDMGPRDYILYLCSAGYNDSSITQLVGNVTVCSTPKTSVLDVNLPS 672

Query:   641 ITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRV 700
             ITIP+L   + VT+TR VTNVG ++S Y+ +VE P G+ + V PE + FN   K +SF V
Sbjct:   673 ITIPDL--KDEVTLTRTVTNVGTVDSVYKVVVEPPLGIQVVVAPETLVFNSKTKNVSFTV 730

Query:   701 TFFSNHKVHPVPDAEYRFGSLTWTD 725
                + HK++      + FG+L WTD
Sbjct:   731 RVSTTHKIN----TGFYFGNLIWTD 751

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0048046 "apoplast" evidence=IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

UNIPROTKB|Q0J050 Os09g0530800 "Os09g0530800 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1267 (451.1 bits), Expect = 5.8e-176, Sum P(2) = 5.8e-176
 Identities = 255/503 (50%), Positives = 345/503 (68%)

Query:   231 IYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIA 289
             +YK CW  G CT AD+L AFD AIHDGVDV+SVS+G   PL +Y+D  D ++IGSFHA+A
Sbjct:   253 VYKVCWATGDCTAADILAAFDDAIHDGVDVISVSLGQAPPLPAYVD--DVLSIGSFHAVA 310

Query:   290 KGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKV 349
             KG+ VV SAGN GP ++T++N+APWI+TV A TIDR F   I LGN+    GQ++  GK 
Sbjct:   311 KGVVVVCSAGNSGPYSETVINSAPWIVTVAAGTIDRIFLAKIILGNNSTYVGQTLYSGKH 370

Query:   350 SHGFTGLTYSERIAFD--PDS-ANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVT 406
                   + Y+E I+ D   D+ A  C  GSLNATL  G ++LCF     +    A  +V 
Sbjct:   371 PSKSVRIVYAEDISSDNADDTDARSCTAGSLNATLVKGNVVLCFQTRAQRSASVAVETVK 430

Query:   407 QAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDL 466
             +A GVG+I+AQF T  + S   IPC++V+Y+VGT IL+Y    R+P+A+ S P+T++G+L
Sbjct:   431 KARGVGVIFAQFLTKDIASSLDIPCVQVDYQVGTAILAYTTSMRNPVAQFSFPKTIVGEL 490

Query:   467 VSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIG--SKDIQG--YALLSGTSMS 522
             V+P VA FSSRGP+S+SP++LKPDI APGV+IL+A+ P    S  I    + + SGTSMS
Sbjct:   491 VAPEVAYFSSRGPSSLSPSILKPDIAAPGVNILAAWSPAAAISSAIGSVNFKIDSGTSMS 550

Query:   523 CPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGH 582
             CPH++G+ AL+KS+H +WSPAA++SALVTTA+     G  +  E +   +A+PFD GGGH
Sbjct:   551 CPHISGVVALLKSMHPNWSPAAVKSALVTTANVHDAYGFEMVSEAAPYNDANPFDYGGGH 610

Query:   583 VNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPSIT 642
             VNPN+A +PGLVYD+ V DY++FLC MG+N ++IS +T+ +  C       L+LN+PSIT
Sbjct:   611 VNPNRAAHPGLVYDMGVSDYMRFLCSMGYNTSAISSMTQQQTTCQHTPKSQLNLNVPSIT 670

Query:   643 IPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTF 702
             IP L     +TV+R VTNVG   S Y A VEAP GV++TV P +++FN T++ L F+VTF
Sbjct:   671 IPELRGK--LTVSRTVTNVGPALSKYRARVEAPPGVDVTVSPSLLTFNSTVRKLPFKVTF 728

Query:   703 FSNHKVHPVPDAEYRFGSLTWTD 725
              +  KV       Y FGSLTW D
Sbjct:   729 QAKLKVK----GRYTFGSLTWED 747

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005618 "cell wall" evidence=ISS

TAIR|locus:2037915 AT1G32950 "AT1G32950" [Arabidopsis thaliana (taxid:3702)]

 Score = 1212 (431.7 bits), Expect = 2.0e-175, Sum P(2) = 2.0e-175
 Identities = 253/505 (50%), Positives = 333/505 (65%)

Query:   231 IYKACWDIG------CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGS 284
             +YKACW I       C+ +D++KA D+AIHDGVDVLS+S+G  +PL S  D RD IA G+
Sbjct:   253 MYKACWYINELDGVTCSFSDIMKAIDEAIHDGVDVLSISLGGRVPLNSETDLRDGIATGA 312

Query:   285 FHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSI 344
             FHA+AKGI VV + GN GP +QT+VNTAPWI+TV ATT+DR+F T I LGN+QV+ GQ++
Sbjct:   313 FHAVAKGIVVVCAGGNAGPSSQTVVNTAPWILTVAATTLDRSFATPIILGNNQVILGQAM 372

Query:   345 DIGKVSHGFTGLTYSERIAFDPDSAND-CRQGSLNATLA-AGKIILCFSRP-DTQDIQSA 401
              IG    GFT L Y E      D+ +  C   +LN+    AGK++LCF+   D   + +A
Sbjct:   373 YIGP-ELGFTSLVYPEDPGNSIDTFSGVCESLNLNSNRTMAGKVVLCFTTARDFTVVSTA 431

Query:   402 AISVTQAGGVGLIYAQFHTDGLDSCNL-IPCIKVNYEVGTQILSYIRRARSPIAKLSSPE 460
             A  V  AGG+GLI A+     L  C+   PC+ ++ E+GT IL YIR   SP+ K+    
Sbjct:   432 ASIVKAAGGLGLIIARNPGYNLAPCSDDFPCVAIDNELGTDILFYIRYTGSPVVKIQPSR 491

Query:   461 TVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTS 520
             T++G+ V  +VA+FSSRGPNS+SPA+LKPDI APGV IL+A  P  + +  G+ + SGTS
Sbjct:   492 TLVGEPVGTKVATFSSRGPNSISPAILKPDIAAPGVSILAATSPNDTLNAGGFVMRSGTS 551

Query:   521 MSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGG 580
             M+ P ++G+ AL+KSLH DWSPAA RSA+VTTA +T   G  I  E S+ K  DPFD GG
Sbjct:   552 MAAPVISGVIALLKSLHPDWSPAAFRSAIVTTAWRTDPFGEQIAAESSSLKVPDPFDYGG 611

Query:   581 GHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPS 640
             G VNP KA  PGL+ D+  +DY+ +LC  G+ND+SISRL      C       LD+NLPS
Sbjct:   612 GLVNPEKAAEPGLILDMDSQDYVLYLCSAGYNDSSISRLVGKVTVCSNPKPSVLDINLPS 671

Query:   641 ITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRV 700
             ITIPNL   + VT+TR VTNVG ++S Y+ LVE P G+ + V PE + FN   K +SF V
Sbjct:   672 ITIPNL--KDEVTLTRTVTNVGPVDSVYKVLVEPPLGIQVVVTPETLVFNSKTKSVSFTV 729

Query:   701 TFFSNHKVHPVPDAEYRFGSLTWTD 725
                + HK++      + FGSLTWTD
Sbjct:   730 IVSTTHKIN----TGFYFGSLTWTD 750

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

TAIR|locus:2127706 AT4G10520 "AT4G10520" [Arabidopsis thaliana (taxid:3702)]

 Score = 1236 (440.2 bits), Expect = 4.1e-175, Sum P(2) = 4.1e-175
 Identities = 254/497 (51%), Positives = 336/497 (67%)

Query:   231 IYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAK 290
             +YKACW   C+ ADVLKA D+AIHDGVD+LS+S+G  +PLF    + +  ++G+FHA+AK
Sbjct:   255 VYKACWSGYCSGADVLKAMDEAIHDGVDILSLSLGPSVPLFP---ETEHTSVGAFHAVAK 311

Query:   291 GITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVS 350
             GI VV +AGN GP AQTI N APW++TV ATT DR+FPTAITLGN+  + GQ+I  G   
Sbjct:   312 GIPVVIAAGNAGPTAQTISNVAPWVLTVAATTQDRSFPTAITLGNNITILGQAI-YGGPE 370

Query:   351 HGFTGLTYSERIAFDPDSANDCRQGSLNA-TLAAGKIILCFSRPDTQDIQSAAISVTQAG 409
              GF GLTY E     P S  DC + S N  +   GK++LCF+     +   AA  V  AG
Sbjct:   371 LGFVGLTYPE----SPLSG-DCEKLSANPNSTMEGKVVLCFAASTPSNAAIAA--VINAG 423

Query:   410 GVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSP 469
             G+GLI A+  T  L      P + +++E+GT IL YIR  RSPI K+ + +T+ G  VS 
Sbjct:   424 GLGLIMAKNPTHSLTPTRKFPWVSIDFELGTDILFYIRSTRSPIVKIQASKTLFGQSVST 483

Query:   470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
             +VA+FSSRGPNS+SPA+LKPDI APGV+IL+A  P  S +  G+A++SGTSM+ P V+G+
Sbjct:   484 KVATFSSRGPNSVSPAILKPDIAAPGVNILAAISPNSSINDGGFAMMSGTSMATPVVSGV 543

Query:   530 AALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAM 589
               L+KSLH DWSP+AI+SA+VTTA +T   G  IF +GS+RK ADPFD GGG +NP KA+
Sbjct:   544 VVLLKSLHPDWSPSAIKSAIVTTAWRTDPSGEPIFADGSSRKLADPFDYGGGLINPEKAV 603

Query:   590 NPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPSITIPNLHNN 649
              PGL+YD+T +DY+ ++C + ++D SISR+      C       LDLNLPSITIPNL   
Sbjct:   604 KPGLIYDMTTDDYVMYMCSVDYSDISISRVLGKITVCPNPKPSVLDLNLPSITIPNLRGE 663

Query:   650 ETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVH 709
               VT+TR VTNVG +NS Y+ +++ P G+N+ V P  + F+ T    SF V   + HKV+
Sbjct:   664 --VTLTRTVTNVGPVNSVYKVVIDPPTGINVAVTPAELVFDYTTTKRSFTVRVSTTHKVN 721

Query:   710 PVPDAEYRFGSLTWTDD 726
                   Y FGSLTWTD+
Sbjct:   722 ----TGYYFGSLTWTDN 734

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

TAIR|locus:2127696 AT4G10510 "AT4G10510" [Arabidopsis thaliana (taxid:3702)]

 Score = 1226 (436.6 bits), Expect = 2.0e-173, Sum P(2) = 2.0e-173
 Identities = 260/504 (51%), Positives = 336/504 (66%)

Query:   231 IYKACW----DIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSF 285
             +YK CW    DI  C+ AD+LKA D+AIHDGVDVLS+S+G E PL+   D RD IA G+F
Sbjct:   247 VYKTCWYLDLDIAACSSADILKAMDEAIHDGVDVLSLSLGFE-PLYPETDVRDGIATGAF 305

Query:   286 HAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSID 345
             HA+ KGITVV +AGN GP AQT+ NTAPWI+TV ATT+DR+F T +TLGN++V+ GQ+I 
Sbjct:   306 HAVLKGITVVCAAGNAGPAAQTVGNTAPWILTVAATTLDRSFVTPMTLGNNKVILGQAIY 365

Query:   346 IGKVSHGFTGLTYSERIAFDPDS-ANDCRQGSLNATLA-AGKIILCFSR-PDTQDIQSAA 402
              G    GFT L Y E      +S +  C +  +N+    AGK++LCF+  P +  +  AA
Sbjct:   366 TG-TEVGFTSLVYPENPGNSNESFSGTCERLLINSNRTMAGKVVLCFTESPYSISVTRAA 424

Query:   403 ISVTQAGGVGLIYAQFHTDGLDSC-NLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPET 461
               V +AGG+G+I A    + L  C +  PC+ V+YE+GT IL YIR   SP+ K+    T
Sbjct:   425 HYVKRAGGLGVIIAGQPGNVLRPCLDDFPCVAVDYELGTYILFYIRSNGSPVVKIQPSRT 484

Query:   462 VIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSM 521
             +IG  V  +VASFSSRGPN +S A+LKPDI APGV IL+A     + + +G+  LSGTSM
Sbjct:   485 LIGQPVGTKVASFSSRGPNPISAAILKPDIAAPGVSILAATTTNTTFNDRGFIFLSGTSM 544

Query:   522 SCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGG 581
             + P ++GI AL+K+LH DWSPAAIRSA+VTTA +T   G  IF EGS RK ADPFD GGG
Sbjct:   545 ATPTISGIVALLKALHPDWSPAAIRSAIVTTAWRTDPFGEQIFAEGSPRKPADPFDYGGG 604

Query:   582 HVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPSI 641
              VNP KA  PGLVYD+ +EDY+ ++C +G+N+ SIS+L      C       LD NLPSI
Sbjct:   605 LVNPEKATKPGLVYDLGLEDYVLYMCSVGYNETSISQLVGKGTVCSYPKPSVLDFNLPSI 664

Query:   642 TIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVT 701
             TIPNL   E VT+ R +TNVG + S Y   VE P G  +TV PE + FN T K +SF+V+
Sbjct:   665 TIPNL--KEEVTLPRTLTNVGPLESVYRVAVEPPLGTQVTVTPETLVFNSTTKRVSFKVS 722

Query:   702 FFSNHKVHPVPDAEYRFGSLTWTD 725
               + HK++      Y FGSLTW+D
Sbjct:   723 VSTTHKIN----TGYYFGSLTWSD 742

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

TAIR|locus:2119008 AT4G21630 "AT4G21630" [Arabidopsis thaliana (taxid:3702)]

 Score = 812 (290.9 bits), Expect = 4.7e-158, Sum P(3) = 4.7e-158
 Identities = 170/323 (52%), Positives = 216/323 (66%)

Query:   404 SVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVI 463
             S+   G V +I A+   D L   N IP I  +YE+GT IL YIR  RSP  ++S+  T+ 
Sbjct:   439 SIAGRGVVAVILAKKPDDLLARYNSIPYIFTDYEIGTHILQYIRTTRSPTVRISAATTLN 498

Query:   464 GDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSC 523
             G     +VA FSSRGPNS+SPA+LKPDI APGV IL+A  P+      G+ L SGTSMS 
Sbjct:   499 GQPAMTKVAEFSSRGPNSVSPAILKPDIAAPGVSILAAVSPLDPDAFNGFGLYSGTSMST 558

Query:   524 PHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHV 583
             P V+GI AL+KSLH +WSPAA+RSALVTTA +T   G  IF +GS +K ADPFD GGG V
Sbjct:   559 PVVSGIIALLKSLHPNWSPAAMRSALVTTAWRTSPSGEPIFAQGSNKKLADPFDYGGGLV 618

Query:   584 NPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPSITI 643
             NP+KA  PGLVYD+ ++DYI ++C  G+ D+SISR+   K  C       LD+NLPSITI
Sbjct:   619 NPDKAAQPGLVYDMGIKDYINYMCSAGYIDSSISRVLGKKTKCTIPKPSILDINLPSITI 678

Query:   644 PNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIK-ILSFRVTF 702
             PNL     VT+TR VTNVG I S Y+A++E+P G+ +TV P  + FN   K +L+F V  
Sbjct:   679 PNLEKE--VTLTRTVTNVGPIKSVYKAVIESPLGITLTVNPTTLVFNSAAKRVLTFSVKA 736

Query:   703 FSNHKVHPVPDAEYRFGSLTWTD 725
              ++HKV+    + Y FGSLTWTD
Sbjct:   737 KTSHKVN----SGYFFGSLTWTD 755

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

TAIR|locus:2119018 AT4G21640 "AT4G21640" [Arabidopsis thaliana (taxid:3702)]

 Score = 790 (283.2 bits), Expect = 2.6e-157, Sum P(3) = 2.6e-157
 Identities = 167/323 (51%), Positives = 213/323 (65%)

Query:   404 SVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVI 463
             S+   G V +I A+   D     N    I  +YE+GT IL YIR  RSP  ++S+  T+ 
Sbjct:   402 SIAGRGVVAVILAKKPDDRPAPDNSY--IFTDYEIGTHILQYIRTTRSPTVRISAATTLT 459

Query:   464 GDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSC 523
             G   +P+VA+FSSRGPNS+SPA+LKPDI APGV IL+A  P+      G+ L SGTSMS 
Sbjct:   460 GQPATPKVAAFSSRGPNSVSPAILKPDIAAPGVSILAAVSPLDPGAFNGFKLHSGTSMST 519

Query:   524 PHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHV 583
             P V+GI  L+KSLH  WSPAA+RSALVTTA +T   G  IF +GS +K ADPFD GGG V
Sbjct:   520 PVVSGIIVLLKSLHPKWSPAAMRSALVTTAWRTSPSGEPIFAQGSNKKLADPFDYGGGLV 579

Query:   584 NPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPSITI 643
             NP KA  PGLVYD+ ++DYI ++C  G+ND+SISR+   K  C       LD+NLPSITI
Sbjct:   580 NPEKAAKPGLVYDMGIKDYINYMCSAGYNDSSISRVLGKKTKCPIPKPSMLDINLPSITI 639

Query:   644 PNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIK-ILSFRVTF 702
             PNL     VT+TR VTNVG I S Y A++E+P G+ +TV P ++ F    K +L+F V  
Sbjct:   640 PNLEKE--VTLTRTVTNVGPIKSVYRAVIESPLGITLTVNPTILVFKSAAKRVLTFSVKA 697

Query:   703 FSNHKVHPVPDAEYRFGSLTWTD 725
              ++HKV+    + Y FGSLTWTD
Sbjct:   698 KTSHKVN----SGYFFGSLTWTD 716

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

TAIR|locus:2143014 AT5G11940 "AT5G11940" [Arabidopsis thaliana (taxid:3702)]

 Score = 1065 (380.0 bits), Expect = 7.3e-152, Sum P(2) = 7.3e-152
 Identities = 231/502 (46%), Positives = 308/502 (61%)

Query:   231 IYKACW---DIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHA 287
             +YK CW   D  C  AD++KA D AI DGVD++++SIG   P+ + +D  + I+ G+FHA
Sbjct:   263 VYKVCWQRVDRTCASADIIKAMDDAIADGVDLITISIGRPNPVLTEVDVYNQISYGAFHA 322

Query:   288 IAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIG 347
             +AKGI V+S+ GN GP A T+ N APWIITV ATT+DR +PT +TLGN+  L  ++   G
Sbjct:   323 VAKGIPVLSAGGNFGPGAYTVQNIAPWIITVAATTLDRWYPTPLTLGNNVTLMARTPYKG 382

Query:   348 KVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQ 407
                 G     YS      PD              A GK++L F+    +        + Q
Sbjct:   383 NEIQGDLMFVYS------PDEMTSA---------AKGKVVLTFTTGSEESQAGYVTKLFQ 427

Query:   408 AGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLV 467
                  +I A    D +     +P I V+YE G+ I  Y+   R P  K+SS   + G LV
Sbjct:   428 VEAKSVIIAAKRNDVIKVSEGLPIIMVDYEHGSTIWKYLSITRMPTIKISSAIALNGRLV 487

Query:   468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
             + +VA FS RGPNS+SP VLKPD+ APGV I++A  P      +G+A+ SGTSMS P VA
Sbjct:   488 ATKVADFSGRGPNSISPYVLKPDVAAPGVAIVAASTPESMGTEEGFAIQSGTSMSTPVVA 547

Query:   528 GIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNK 587
             G+ AL++++H DWSPAA++SAL+TTAS T   G  IF EG TRK ADPFD GGG VNPNK
Sbjct:   548 GLVALLRAVHPDWSPAALKSALITTASTTDPYGEPIFSEGMTRKLADPFDFGGGLVNPNK 607

Query:   588 AMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKI--NCLKNNHLALDLNLPSITIPN 645
             A +PGLVYDI+ EDY  FLC   +++  I++++K+     C       LDLNLPSITIP 
Sbjct:   608 AADPGLVYDISAEDYRLFLCASHYDEKQITKISKTHTPYRCPSPKPSMLDLNLPSITIPF 667

Query:   646 LHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSN 705
             L   E VT+TR VTNVG ++S Y+ +VE P GV ++V P  + FN  +KILS++VT  + 
Sbjct:   668 L--KEDVTLTRTVTNVGPVDSVYKLIVEPPLGVKISVTPNTLLFNSNVKILSYKVTVSTT 725

Query:   706 HKVHPVPDAEYRFGSLTWTDDS 727
             HK + +    Y FGSLTWTD S
Sbjct:   726 HKSNSI----YYFGSLTWTDGS 743

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8DM28	RL11_THEEB	No assigned EC number	0.7028	0.1446	0.9787	yes	no
P60102	RL11_GLOVI	No assigned EC number	0.7391	0.1446	0.9787	yes	no
A3PAS2	RL11_PROM0	No assigned EC number	0.7028	0.1446	0.9787	yes	no
B1XJH2	RL11_SYNP2	No assigned EC number	0.7101	0.1446	0.9787	yes	no
Q5N3N9	RL11_SYNP6	No assigned EC number	0.7246	0.1446	0.9787	yes	no
Q31QK3	RL11_SYNE7	No assigned EC number	0.7318	0.1446	0.9787	yes	no
B8HVL5	RL11_CYAP4	No assigned EC number	0.7173	0.1446	0.9787	yes	no
Q7U3T6	RL11_SYNPX	No assigned EC number	0.7246	0.1446	0.9787	yes	no
Q7V381	RL11_PROMP	No assigned EC number	0.7101	0.1446	0.9787	yes	no
Q3AGS9	RL11_SYNSC	No assigned EC number	0.7246	0.1446	0.9787	yes	no
A9BDG7	RL11_PROM4	No assigned EC number	0.7028	0.1446	0.9787	yes	no
B0JNQ4	RL11_MICAN	No assigned EC number	0.7028	0.1446	0.9787	yes	no
Q7V479	RL11_PROMM	No assigned EC number	0.7391	0.1446	0.9787	yes	no
B7JWT8	RL11_CYAP8	No assigned EC number	0.7173	0.1446	0.9787	yes	no
A8G2L1	RL11_PROM2	No assigned EC number	0.7028	0.1446	0.9787	yes	no
A2BUI1	RL11_PROM5	No assigned EC number	0.7246	0.1446	0.9787	yes	no
B2JA74	RL11_NOSP7	No assigned EC number	0.7028	0.1446	0.9787	yes	no
Q0I6K7	RL11_SYNS3	No assigned EC number	0.7246	0.1446	0.9787	yes	no
A5GPD5	RL11_SYNPW	No assigned EC number	0.7391	0.1446	0.9787	yes	no
A5GWK2	RL11_SYNR3	No assigned EC number	0.7246	0.1446	0.9787	yes	no
Q3AUJ5	RL11_SYNS9	No assigned EC number	0.7101	0.1446	0.9787	yes	no
O78412	RK11_GUITH	No assigned EC number	0.7246	0.1446	0.9787	yes	no
A2BNZ9	RL11_PROMS	No assigned EC number	0.7028	0.1446	0.9787	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	954
cd04852	307	cd04852, Peptidases_S8_3, Peptidase S8 family doma	1e-90
PRK00140	141	PRK00140, rplK, 50S ribosomal protein L11; Validat	9e-85
TIGR01632	140	TIGR01632, L11_bact, 50S ribosomal protein L11	2e-71
CHL00127	140	CHL00127, rpl11, ribosomal protein L11; Validated	3e-71
COG0080	141	COG0080, RplK, Ribosomal protein L11 [Translation,	2e-70
cd00349	131	cd00349, Ribosomal_L11, Ribosomal protein L11	5e-67
smart00649	132	smart00649, RL11, Ribosomal protein L11/L12	6e-67
PRK14539	196	PRK14539, PRK14539, 50S ribosomal protein L11/unkn	4e-36
PRK01143	163	PRK01143, rpl11p, 50S ribosomal protein L11P; Vali	4e-36
cd04852	307	cd04852, Peptidases_S8_3, Peptidase S8 family doma	1e-31
pfam00298	69	pfam00298, Ribosomal_L11, Ribosomal protein L11, R	2e-31
cd07474	295	cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid	1e-30
pfam03946	59	pfam03946, Ribosomal_L11_N, Ribosomal protein L11,	1e-27
cd02120	126	cd02120, PA_subtilisin_like, PA_subtilisin_like: P	4e-25
cd07477	229	cd07477, Peptidases_S8_Subtilisin_subset, Peptidas	4e-22
pfam00082	277	pfam00082, Peptidase_S8, Subtilase family	4e-21
cd07487	264	cd07487, Peptidases_S8_1, Peptidase S8 family doma	3e-20
cd07489	312	cd07489, Peptidases_S8_5, Peptidase S8 family doma	1e-19
pfam05922	76	pfam05922, Inhibitor_I9, Peptidase inhibitor I9	4e-19
cd07473	259	cd07473, Peptidases_S8_Subtilisin_like, Peptidase	3e-18
cd07490	254	cd07490, Peptidases_S8_6, Peptidase S8 family doma	1e-17
cd04077	255	cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep	3e-17
cd07481	264	cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep	7e-17
cd00306	241	cd00306, Peptidases_S8_S53, Peptidase domain in th	2e-16
cd04842	293	cd04842, Peptidases_S8_Kp43_protease, Peptidase S8	9e-16
cd07474	295	cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid	2e-15
cd07484	260	cd07484, Peptidases_S8_Thermitase_like, Peptidase	2e-15
cd07478	455	cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam	7e-15
cd07475	346	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8	6e-13
cd07480	297	cd07480, Peptidases_S8_12, Peptidase S8 family dom	2e-12
cd00306	241	cd00306, Peptidases_S8_S53, Peptidase domain in th	5e-12
TIGR03921	350	TIGR03921, T7SS_mycosin, type VII secretion-associ	9e-11
cd07487	264	cd07487, Peptidases_S8_1, Peptidase S8 family doma	1e-10
cd07485	273	cd07485, Peptidases_S8_Fervidolysin_like, Peptidas	1e-10
PTZ00321	342	PTZ00321, PTZ00321, ribosomal protein L11; Provisi	4e-10
COG1404	508	COG1404, AprE, Subtilisin-like serine proteases [P	6e-10
cd07496	285	cd07496, Peptidases_S8_13, Peptidase S8 family dom	1e-09
cd05562	275	cd05562, Peptidases_S53_like, Peptidase domain in	3e-09
cd07493	261	cd07493, Peptidases_S8_9, Peptidase S8 family doma	7e-09
cd07498	242	cd07498, Peptidases_S8_15, Peptidase S8 family dom	1e-08
cd04848	267	cd04848, Peptidases_S8_Autotransporter_serine_prot	2e-08
cd07479	255	cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa	3e-08
pfam00082	277	pfam00082, Peptidase_S8, Subtilase family	4e-08
cd07483	291	cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti	1e-07
cd04857	412	cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_	3e-07
cd07493	261	cd07493, Peptidases_S8_9, Peptidase S8 family doma	6e-07
cd07477	229	cd07477, Peptidases_S8_Subtilisin_subset, Peptidas	3e-06
cd05561	239	cd05561, Peptidases_S8_4, Peptidase S8 family doma	4e-06
cd07475	346	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8	1e-05
cd07482	294	cd07482, Peptidases_S8_Lantibiotic_specific_protea	1e-05
cd07490	254	cd07490, Peptidases_S8_6, Peptidase S8 family doma	2e-05
PTZ00262	639	PTZ00262, PTZ00262, subtilisin-like protease; Prov	2e-05
cd07497	311	cd07497, Peptidases_S8_14, Peptidase S8 family dom	2e-05
cd04848	267	cd04848, Peptidases_S8_Autotransporter_serine_prot	3e-05
cd07479	255	cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa	3e-05
cd07473	259	cd07473, Peptidases_S8_Subtilisin_like, Peptidase	5e-05
TIGR03895	602	TIGR03895, protease_PatA, cyanobactin maturation p	8e-05
cd07489	312	cd07489, Peptidases_S8_5, Peptidase S8 family doma	9e-05
cd04056	361	cd04056, Peptidases_S53, Peptidase domain in the S	9e-05
pfam02225	96	pfam02225, PA, PA domain	1e-04
cd07488	247	cd07488, Peptidases_S8_2, Peptidase S8 family doma	3e-04
cd07494	298	cd07494, Peptidases_S8_10, Peptidase S8 family dom	8e-04
cd07492	222	cd07492, Peptidases_S8_8, Peptidase S8 family doma	9e-04
cd07476	267	cd07476, Peptidases_S8_thiazoline_oxidase_subtilis	0.001
cd04847	291	cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas	0.004

>gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3

 Score =  290 bits (744), Expect = 1e-90
 Identities = 106/244 (43%), Positives = 130/244 (53%), Gaps = 38/244 (15%)

Query: 110 LKLHTTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVP 169
            +LHTTRS +F+GL        L   +N GEG IIG++DTG+WPE  SF+D G G  P P
Sbjct: 1   YQLHTTRSPDFLGLPGAWGGSLLG-AANAGEGIIIGVLDTGIWPEHPSFADVGGG--PYP 57

Query: 170 PHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMIN--------------------AST 209
             W G C  GE FN  +CN KLIGAR+F  G                          AST
Sbjct: 58  HTWPGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTAST 117

Query: 210 --------NTDEGLAAGLARGGAPLAHLAIYKACW-DIGCTDADVLKAFDKAIHDGVDVL 260
                    +  G A G A G AP A +A+YK CW D GC  +D+L A D+AI DGVDV+
Sbjct: 118 AAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVI 177

Query: 261 SVSIG-NEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVG 319
           S SIG      +      D IAI   HA+  GI V +SAGN GP A T+ N APW+ TV 
Sbjct: 178 SYSIGGGSPDPYE-----DPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVA 232

Query: 320 ATTI 323
           A+T+
Sbjct: 233 ASTL 236

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307

>gnl|CDD|234661 PRK00140, rplK, 50S ribosomal protein L11; Validated

 Score =  268 bits (687), Expect = 9e-85
 Identities = 96/138 (69%), Positives = 112/138 (81%)

Query: 805 AKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVY 864
           AKKV+G IKL + AGKA PAPPVGPALG +GVNIM FCK +NART D+ G  IPV ITVY
Sbjct: 2   AKKVVGYIKLQIPAGKANPAPPVGPALGQRGVNIMEFCKAFNARTQDQKGLPIPVVITVY 61

Query: 865 DDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSI 924
           +DRSFTFI KTPPASVLL KAAG+EKGS +P ++KVGKIT  Q+R IA  K+PDLN   I
Sbjct: 62  EDRSFTFITKTPPASVLLKKAAGIEKGSGEPNKEKVGKITRAQVREIAETKMPDLNAADI 121

Query: 925 ESAMRIIAGTAANMGIDI 942
           E+AMR+IAGTA +MGI +
Sbjct: 122 EAAMRMIAGTARSMGIVV 139

Length = 141

>gnl|CDD|233500 TIGR01632, L11_bact, 50S ribosomal protein L11

 Score =  232 bits (593), Expect = 2e-71
 Identities = 93/140 (66%), Positives = 115/140 (82%), Gaps = 1/140 (0%)

Query: 806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVY 864
           KK++G+IKL + AG+A PAPPVGPALG +GVNIM FCK +NARTAD + G  +PV ITVY
Sbjct: 1   KKIVGIIKLQVPAGQANPAPPVGPALGQRGVNIMEFCKQFNARTADYEPGLPVPVVITVY 60

Query: 865 DDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSI 924
           +D+SFTFI+KTPP S LL KAAGVEKGSK+PK++KVGKIT +Q+R IA  K+ DLN   I
Sbjct: 61  EDKSFTFIVKTPPVSYLLKKAAGVEKGSKNPKKEKVGKITRKQVREIAEIKMSDLNTKDI 120

Query: 925 ESAMRIIAGTAANMGIDIDP 944
           E+AM+IIAGTA +MGI+I  
Sbjct: 121 EAAMKIIAGTAKSMGIEIVG 140

This model represents bacterial, chloroplast, and most mitochondrial forms of 50S ribosomal protein L11 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 140

>gnl|CDD|177049 CHL00127, rpl11, ribosomal protein L11; Validated

 Score =  231 bits (591), Expect = 3e-71
 Identities = 97/138 (70%), Positives = 113/138 (81%)

Query: 805 AKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVY 864
           AKK L +IKLAL AGKATPAPPVGPALG  GVNI  FCK+YNART DK G +IPVEI+VY
Sbjct: 2   AKKKLAIIKLALPAGKATPAPPVGPALGQHGVNINLFCKEYNARTKDKIGLIIPVEISVY 61

Query: 865 DDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSI 924
           +D+S+TFILKTPPASVLL KAAG++KGS +P ++KVG ITI+QL  IA  KLPDLN  S+
Sbjct: 62  EDKSYTFILKTPPASVLLAKAAGIKKGSGEPNKKKVGSITIKQLEEIAQIKLPDLNTISL 121

Query: 925 ESAMRIIAGTAANMGIDI 942
             A++II GTA NMGI I
Sbjct: 122 SKAIKIIEGTAKNMGISI 139

Length = 140

>gnl|CDD|223158 COG0080, RplK, Ribosomal protein L11 [Translation, ribosomal structure and biogenesis]

 Score =  229 bits (587), Expect = 2e-70
 Identities = 85/140 (60%), Positives = 109/140 (77%)

Query: 805 AKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVY 864
           AKKV+ +IKL + AGKA P+PPVGPALG  GVNIM FCK++NA T D+ G  +PV ITVY
Sbjct: 1   AKKVVKIIKLQVPAGKANPSPPVGPALGQLGVNIMEFCKEFNAATKDEKGLPVPVVITVY 60

Query: 865 DDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSI 924
           +DRSFTFI+KTPPAS LL KAAG+EKGS  P + KVGK+T+ Q+R IA  K+PDLN   +
Sbjct: 61  EDRSFTFIVKTPPASALLKKAAGIEKGSGKPNKNKVGKLTLAQVREIAKTKMPDLNAKDL 120

Query: 925 ESAMRIIAGTAANMGIDIDP 944
           E+A++ I GTA +MG+ ++ 
Sbjct: 121 EAAVKEILGTARSMGVTVEG 140

Length = 141

>gnl|CDD|100101 cd00349, Ribosomal_L11, Ribosomal protein L11

 Score =  219 bits (561), Expect = 5e-67
 Identities = 83/131 (63%), Positives = 105/131 (80%)

Query: 812 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTF 871
           IKL + AGKA+PAPP+GPALG  GVNIM FCK++NART D  G  +PV+ITVY+DRSFTF
Sbjct: 1   IKLQVPAGKASPAPPLGPALGQLGVNIMKFCKEFNARTKDYKGLPVPVKITVYNDRSFTF 60

Query: 872 ILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRII 931
            +KTPPAS LL KAAG+EKGSK P ++KVG IT++Q+  IA  KLPDLN  +++SA++ I
Sbjct: 61  EVKTPPASALLKKAAGIEKGSKKPNKEKVGNITLDQVYEIAKIKLPDLNAKTLKSAVKEI 120

Query: 932 AGTAANMGIDI 942
            GTA +MGI +
Sbjct: 121 LGTARSMGITV 131

Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal protein L12, which is distinct from the L12 involved in the formation of the L7/L12 stalk. The C-terminal domain (CTD) of L11 is essential for binding 23S rRNA, while the N-terminal domain (NTD) contains the binding site for the antibiotics thiostrepton and micrococcin. L11 and 23S rRNA form an essential part of the GTPase-associated region (GAR). Based on differences in the relative positions of the L11 NTD and CTD during the translational cycle, L11 is proposed to play a significant role in the binding of initiation factors, elongation factors, and release factors to the ribosome. Several factors, including the class I release factors RF1 and RF2, are known to interact directly with L11. In eukaryotes, L11 has been implicated in regulating the levels of ubiquinated p53 and MDM2 in the MDM2-p53 feedback loop, which is responsible for apoptosis in response to DNA damage. In bacteria, the "stringent response" to harsh conditions allows bacteria to survive, and ribosomes that lack L11 are deficient in stringent factor stimulation. Length = 131

>gnl|CDD|197819 smart00649, RL11, Ribosomal protein L11/L12

 Score =  219 bits (560), Expect = 6e-67
 Identities = 84/132 (63%), Positives = 105/132 (79%)

Query: 812 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTF 871
           IKL + AGKA PAPP+GPALG  G+NIM FCK++NART DK G  IPV+ITVY+D+SFTF
Sbjct: 1   IKLQIPAGKANPAPPLGPALGQLGINIMEFCKEFNARTKDKKGLPIPVKITVYNDKSFTF 60

Query: 872 ILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRII 931
           ILKTPPAS LL KAAG+EKGSK P ++KVG IT++Q+  IA  K PDLN   +E+A++ I
Sbjct: 61  ILKTPPASALLKKAAGIEKGSKKPGKKKVGNITLDQVYEIAKIKRPDLNAKDLEAAVKEI 120

Query: 932 AGTAANMGIDID 943
            GTA +MGI ++
Sbjct: 121 LGTARSMGITVE 132

Length = 132

>gnl|CDD|184732 PRK14539, PRK14539, 50S ribosomal protein L11/unknown domain fusion protein; Provisional

 Score =  135 bits (340), Expect = 4e-36
 Identities = 64/138 (46%), Positives = 84/138 (60%), Gaps = 4/138 (2%)

Query: 803 AKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEIT 862
              K+V+ + KL   AG+A P    GP+L   G+N+  F K +N  T D+ G  +PV+IT
Sbjct: 1   MAKKEVVKVAKLQFNAGQAKP----GPSLAGVGINMPEFTKQFNDATRDRGGEPVPVQIT 56

Query: 863 VYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCT 922
           VY D+SF F L T PAS  + +AA ++ GS + K   VG IT+ QL  IA  KLPDLN  
Sbjct: 57  VYKDKSFDFKLFTAPASFKIKQAAKIKSGSANSKTTIVGTITLSQLEEIAKYKLPDLNTD 116

Query: 923 SIESAMRIIAGTAANMGI 940
            +E AM  IAGTA NMG+
Sbjct: 117 DVEEAMHTIAGTAKNMGV 134

Length = 196

>gnl|CDD|234908 PRK01143, rpl11p, 50S ribosomal protein L11P; Validated

 Score =  133 bits (337), Expect = 4e-36
 Identities = 51/140 (36%), Positives = 84/140 (60%), Gaps = 4/140 (2%)

Query: 805 AKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVY 864
            KKV   +++ +E GKATP PP+GPALG  G+N+    ++ N +T D  G  +PV++ V 
Sbjct: 1   MKKV---VEVLVEGGKATPGPPLGPALGPLGLNVKQVVQEINEKTKDFKGMQVPVKVIVD 57

Query: 865 DD-RSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTS 923
            D + F   +  PP + L+ K  G+EKGS +P  + VG ++ EQ+  IA  K  DL    
Sbjct: 58  TDTKKFEIEVGIPPTTALIKKELGIEKGSGEPGHEVVGNLSFEQVVKIAIMKKDDLLSYD 117

Query: 924 IESAMRIIAGTAANMGIDID 943
           +++A++ + GT  +MG+ ++
Sbjct: 118 LKAAVKEVLGTCVSMGVTVE 137

Length = 163

>gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3

 Score =  125 bits (317), Expect = 1e-31
 Identities = 45/72 (62%), Positives = 55/72 (76%), Gaps = 4/72 (5%)

Query: 487 LKPDIVAPGVDILSAYPPIGSKDIQ----GYALLSGTSMSCPHVAGIAALIKSLHRDWSP 542
           LKPDI APGVDIL+A+ P G+         +A +SGTSM+ PHVAG+AAL+KS H DWSP
Sbjct: 236 LKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSP 295

Query: 543 AAIRSALVTTAS 554
           AAI+SAL+TTA 
Sbjct: 296 AAIKSALMTTAY 307

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307

>gnl|CDD|189492 pfam00298, Ribosomal_L11, Ribosomal protein L11, RNA binding domain

 Score =  116 bits (294), Expect = 2e-31
 Identities = 41/69 (59%), Positives = 55/69 (79%)

Query: 874 KTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAG 933
           KTPPAS LL KAAG+EKGS  P ++KVGKIT++Q+  IA  K+PDLN   +E+A++II G
Sbjct: 1   KTPPASYLLKKAAGIEKGSGKPGKEKVGKITLKQVYEIAKIKMPDLNANDLEAAVKIIIG 60

Query: 934 TAANMGIDI 942
           TA +MGI++
Sbjct: 61  TARSMGIEV 69

Length = 69

>gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins

 Score =  122 bits (308), Expect = 1e-30
 Identities = 60/140 (42%), Positives = 75/140 (53%), Gaps = 16/140 (11%)

Query: 449 ARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSK 508
           A S I   +S  TV     +  V   SSRGP   S + +KPDIVAPGVDI+S  P  G+ 
Sbjct: 172 APSAITVGAS--TVADVAEADTVGPSSSRGP-PTSDSAIKPDIVAPGVDIMSTAPGSGT- 227

Query: 509 DIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGS 568
              GYA +SGTSM+ PHVAG AAL+K  H DWSPA I++AL+ TA            +G 
Sbjct: 228 ---GYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPL------YDSDG- 277

Query: 569 TRKEADPFDIGGGHVNPNKA 588
                     G G V+  +A
Sbjct: 278 --VVYPVSRQGAGRVDALRA 295

The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295

>gnl|CDD|217808 pfam03946, Ribosomal_L11_N, Ribosomal protein L11, N-terminal domain

 Score =  105 bits (265), Expect = 1e-27
 Identities = 39/58 (67%), Positives = 46/58 (79%)

Query: 812 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSF 869
           IKL + AGKA PAPP+GPALG  GVNIM FCK++NA T D  G  +PV+ITVY+DRSF
Sbjct: 2   IKLQVPAGKANPAPPLGPALGQLGVNIMEFCKEFNAATKDYKGLPVPVKITVYNDRSF 59

The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Length = 59

>gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases

 Score =  100 bits (252), Expect = 4e-25
 Identities = 46/129 (35%), Positives = 65/129 (50%), Gaps = 7/129 (5%)

Query: 331 ITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCF 390
           +TLGN + + GQS+  G        L Y    +     A+ C  GSL+ +   GKI+LC 
Sbjct: 2   VTLGNGKTIVGQSLYPGN--LKTYPLVYKSANS-GDVDASLCLPGSLDPSKVKGKIVLCD 58

Query: 391 SRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDS---CNLIPCIKVNYEVGTQILSYIR 447
            R       +   +V  AGG G+I A   TDGLD     +++P + V+YE GT ILSYI 
Sbjct: 59  -RGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYIN 117

Query: 448 RARSPIAKL 456
              +P A +
Sbjct: 118 STSNPTATI 126

This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126

>gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins

 Score = 95.7 bits (239), Expect = 4e-22
 Identities = 39/81 (48%), Positives = 47/81 (58%), Gaps = 14/81 (17%)

Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
           ASFSS GP          ++ APGVDILS YP         YA LSGTSM+ PHVAG+AA
Sbjct: 163 ASFSSTGPE--------VELAAPGVDILSTYPN------NDYAYLSGTSMATPHVAGVAA 208

Query: 532 LIKSLHRDWSPAAIRSALVTT 552
           L+ S   + + A +R AL  T
Sbjct: 209 LVWSKRPELTNAQVRQALNKT 229

This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229

>gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family

 Score = 94.3 bits (235), Expect = 4e-21
 Identities = 41/93 (44%), Positives = 56/93 (60%), Gaps = 6/93 (6%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
            +A FS+ G         KPDIVAPG +ILS+ P     D+ GY   SGTSM+ P VAG 
Sbjct: 176 TIADFSNYGGPVDGI---KPDIVAPGGNILSSGP---GGDLGGYDSHSGTSMAAPLVAGA 229

Query: 530 AALIKSLHRDWSPAAIRSALVTTASQTGTDGMN 562
           AAL+ S +   +P  +R+ LVTTA+  G+ G++
Sbjct: 230 AALLLSANPSLTPETLRALLVTTATDLGSMGLD 262

Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277

>gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1

 Score = 91.1 bits (227), Expect = 3e-20
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 5/87 (5%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPI---GSKDIQGYALLSGTSMSCPHV 526
            ++ FSSRGP       +KPD+VAPG +I+S   P    G+    GY  +SGTSM+ PHV
Sbjct: 179 GISYFSSRGPTGD--GRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEMSGTSMATPHV 236

Query: 527 AGIAALIKSLHRDWSPAAIRSALVTTA 553
           +G  AL+   +   +P  ++  L  TA
Sbjct: 237 SGAIALLLQANPILTPDEVKCILRDTA 263

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264

>gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5

 Score = 90.7 bits (226), Expect = 1e-19
 Identities = 50/120 (41%), Positives = 62/120 (51%), Gaps = 15/120 (12%)

Query: 472 ASFSSRGP-NSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIA 530
           + FSS GP N +    LKPD+ APG +ILS YP        GYA+LSGTSM+ P+VAG A
Sbjct: 189 SYFSSWGPTNELY---LKPDVAAPGGNILSTYP----LAGGGYAVLSGTSMATPYVAGAA 241

Query: 531 ALIKSLHR-DWSPAAIRSALVTTASQT-GTDGMNIFEEGSTRKEADPFDIGGGHVNPNKA 588
           AL+        SPA +R  L +TA     +DG       +    A     G G VN  KA
Sbjct: 242 ALLIQARHGKLSPAELRDLLASTAKPLPWSDG-----TSALPDLAPVAQQGAGLVNAYKA 296

gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312

>gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9

 Score = 82.0 bits (203), Expect = 4e-19
 Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 4/80 (5%)

Query: 34  VHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAE 93
            +IV    K      A+  SH  + ++    +EAA  SILYSYKHGF+GFAA+LT+ +AE
Sbjct: 1   TYIVKF--KDGVSKAAVFSSHKSWHASSK--EEAAGASILYSYKHGFNGFAAKLTEEEAE 56

Query: 94  KIAELPGVVQVIPNGILKLH 113
           K+ + P V  V P+ +++LH
Sbjct: 57  KLRKHPDVEYVEPDQVVELH 76

This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76

>gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins

 Score = 85.3 bits (212), Expect = 3e-18
 Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 13/87 (14%)

Query: 467 VSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHV 526
            +  +ASFS+ G  ++       D+ APGVDILS  P        GY  +SGTSM+ PHV
Sbjct: 185 SNDALASFSNYGKKTV-------DLAAPGVDILSTSPG------GGYGYMSGTSMATPHV 231

Query: 527 AGIAALIKSLHRDWSPAAIRSALVTTA 553
           AG AAL+ SL+ + + A I+ A++++A
Sbjct: 232 AGAAALLLSLNPNLTAAQIKDAILSSA 258

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259

>gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6

 Score = 83.8 bits (207), Expect = 1e-17
 Identities = 42/95 (44%), Positives = 51/95 (53%), Gaps = 11/95 (11%)

Query: 468 SPRVASFSSRG---------PNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSG 518
               A FSS G         P+S      KPD+ APGVD+ SA    G+     Y  LSG
Sbjct: 161 DDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSA--RQGANGDGQYTRLSG 218

Query: 519 TSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTA 553
           TSM+ PHVAG+AAL+ + H D SP  I+ AL  TA
Sbjct: 219 TSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETA 253

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254

>gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins

 Score = 82.2 bits (204), Expect = 3e-17
 Identities = 42/86 (48%), Positives = 53/86 (61%), Gaps = 12/86 (13%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
             ASFS+ G       V   DI APGVDILSA+  IGS      A LSGTSM+ PHVAG+
Sbjct: 182 ARASFSNYGS-----CV---DIFAPGVDILSAW--IGSDT--ATATLSGTSMAAPHVAGL 229

Query: 530 AALIKSLHRDWSPAAIRSALVTTASQ 555
           AA + SL  D SPA +++ L+  A++
Sbjct: 230 AAYLLSLGPDLSPAEVKARLLNLATK 255

The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255

>gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins

 Score = 81.3 bits (201), Expect = 7e-17
 Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 8/66 (12%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
            +A FSSRGP++      KPDI APGV+I SA P        GY   SGTSM+ PHVAG+
Sbjct: 186 VLADFSSRGPSTYGRI--KPDISAPGVNIRSAVPG------GGYGSSSGTSMAAPHVAGV 237

Query: 530 AALIKS 535
           AAL+ S
Sbjct: 238 AALLWS 243

Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264

>gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families

 Score = 79.6 bits (196), Expect = 2e-16
 Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 12/81 (14%)

Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
           +  S+ G           DI APG DILS+    G     GYA LSGTSM+ P VAG+AA
Sbjct: 173 SPSSNGGA--------GVDIAAPGGDILSSPTTGGG----GYATLSGTSMAAPIVAGVAA 220

Query: 532 LIKSLHRDWSPAAIRSALVTT 552
           L+ S + D +PA +++AL++T
Sbjct: 221 LLLSANPDLTPAQVKAALLST 241

Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241

>gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases

 Score = 78.5 bits (194), Expect = 9e-16
 Identities = 41/101 (40%), Positives = 51/101 (50%), Gaps = 21/101 (20%)

Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYP---PIGSKDIQGYALLSGTSMSCP 524
           S  VASFSSRGP       +KPD+VAPG  ILSA      IG      Y   SGTSM+ P
Sbjct: 198 SDTVASFSSRGP--TYDGRIKPDLVAPGTGILSARSGGGGIGDTSDSAYTSKSGTSMATP 255

Query: 525 HVAGIAALIKSLHRDW------------SPAAIRSALVTTA 553
            VAG AAL+    R +            S A +++ L+ +A
Sbjct: 256 LVAGAAALL----RQYFVDGYYPTKFNPSAALLKALLINSA 292

Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293

>gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 28/203 (13%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
           G+G  + +IDTG+          G     V   +          +  + +   +  R + 
Sbjct: 1   GKGVKVAVIDTGIDYTHPDLGGPGFPNDKVKGGY----------DFVDDDYDPMDTRPYP 50

Query: 199 KGIMDMIN----------ASTNTDEGLAAGLARGGAPLAHLAIYKACWD-IGCTDADVLK 247
             + D             A      G+  G  +G AP A L  YK        T   ++ 
Sbjct: 51  SPLGDASAGDATGHGTHVAGIIAGNGVNVGTIKGVAPKADLYAYKVLGPGGSGTTDVIIA 110

Query: 248 AFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQT 307
           A ++A+ DG+DV+++S+G+     +  D  D+IAI +  A+  G+ VV++AGN GP   T
Sbjct: 111 AIEQAVDDGMDVINLSLGSS---VNGPDDPDAIAINN--AVKAGVVVVAAAGNSGPAPYT 165

Query: 308 IVN--TAPWIITVGATTIDRAFP 328
           I +  TAP  ITVGA+T+     
Sbjct: 166 IGSPATAPSAITVGASTVADVAE 188

The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295

>gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins

 Score = 76.9 bits (190), Expect = 2e-15
 Identities = 36/86 (41%), Positives = 44/86 (51%), Gaps = 15/86 (17%)

Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
           ASFS+ G           D+ APG  ILS  P         YA +SGTSM+ PHVAG+AA
Sbjct: 190 ASFSNYGKWV--------DVSAPGGGILSTTP------DGDYAYMSGTSMATPHVAGVAA 235

Query: 532 LIKSLHRDWSPAAIRSALVTTASQTG 557
           L+ S     S + +R AL  TA   G
Sbjct: 236 LLYSQGP-LSASEVRDALKKTADDIG 260

Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260

>gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins

 Score = 77.7 bits (192), Expect = 7e-15
 Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 8/63 (12%)

Query: 471 VASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIA 530
           +A FS RGP       +KPDI APGV+IL+A P        GY   SGTS++   VAG  
Sbjct: 359 IAIFSGRGPTRDG--RIKPDIAAPGVNILTASP------GGGYTTRSGTSVAAAIVAGAC 410

Query: 531 ALI 533
           AL+
Sbjct: 411 ALL 413

GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455

>gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases

 Score = 70.8 bits (174), Expect = 6e-13
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 449 ARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSK 508
           A   +  ++S    + +    +++ FSS GP       LKPDI APG +I S        
Sbjct: 213 ADDVLT-VASANKKVPNPNGGQMSGFSSWGP--TPDLDLKPDITAPGGNIYSTVND---- 265

Query: 509 DIQGYALLSGTSMSCPHVAGIAALIKS 535
               Y  +SGTSM+ PHVAG +AL+K 
Sbjct: 266 --NTYGYMSGTSMASPHVAGASALVKQ 290

Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346

>gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 36/97 (37%), Positives = 44/97 (45%), Gaps = 17/97 (17%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
           R  +FS+    S      + DI APGVDI+SA P        GY  +SGTSM+ PHVAG+
Sbjct: 198 RTGNFSAVANFSNG----EVDIAAPGVDIVSAAPG------GGYRSMSGTSMATPHVAGV 247

Query: 530 AALI-------KSLHRDWSPAAIRSALVTTASQTGTD 559
           AAL                  A  +A  TT    G D
Sbjct: 248 AALWAEALPKAGGRALAALLQARLTAARTTQFAPGLD 284

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297

>gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families

 Score = 66.5 bits (162), Expect = 5e-12
 Identities = 54/206 (26%), Positives = 75/206 (36%), Gaps = 33/206 (16%)

Query: 142 TIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARW----F 197
             + +IDTGV P+                   G    G   + +                
Sbjct: 1   VTVAVIDTGVDPDHPDLDG-----------LFGGGDGGNDDDDNENGPTDPDDGNGHGTH 49

Query: 198 IKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHD- 255
           + GI   I AS N   G       G AP A L   K     G  + +D+  A D A  D 
Sbjct: 50  VAGI---IAASANNGGG------VGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQ 100

Query: 256 GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVN---TA 312
           G DV+++S+G      S        AI    A   G+ VV++AGNDGP   T +     +
Sbjct: 101 GADVINLSLGGPGSPPSSALSE---AIDYALA-KLGVLVVAAAGNDGPDGGTNIGYPAAS 156

Query: 313 PWIITVGATTIDRAFPTAITLGNHQV 338
           P +I VGA   D    +  + G   V
Sbjct: 157 PNVIAVGAVDRDGTPASPSSNGGAGV 182

Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241

>gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin

 Score = 64.3 bits (157), Expect = 9e-11
 Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 26/117 (22%)

Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
           +SFS  GP          D+ APG +I+S  P        G A  SGTS + P V+G AA
Sbjct: 191 SSFSLPGP--------WVDLAAPGENIVSLSPGGD-----GLATTSGTSFAAPFVSGTAA 237

Query: 532 LIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKA 588
           L++S   D + A +R  +  TA      G +               +G G V+P  A
Sbjct: 238 LVRSRFPDLTAAQVRRRIEATADHPARGGRD-------------DYVGYGVVDPVAA 281

Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350

>gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1

 Score = 63.0 bits (154), Expect = 1e-10
 Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 29/202 (14%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
           G+G  + ++DTG+      F  + +           +     +    + N    G    +
Sbjct: 1   GKGITVAVLDTGIDAPHPDFDGRIIR------FADFVNTVNGRTTPYDDN----GHGTHV 50

Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAI---- 253
            GI+    A +      + G  +G AP A+L   K   D G  +++D++   D  +    
Sbjct: 51  AGII----AGSGRA---SNGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNE 103

Query: 254 HDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVN--T 311
              + V+++S+G            D +          GI VV +AGN GP   TI +   
Sbjct: 104 KYNIRVVNLSLGAP---PDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGN 160

Query: 312 APWIITVGATTIDRAFPTAITL 333
           +P +ITVGA   D   P    +
Sbjct: 161 SPKVITVGAV--DDNGPHDDGI 180

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264

>gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 35/85 (41%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVD-ILSAYPPIGSKDIQGYALLSGTSMSCPHVAG 528
             ASFS+ G           DI APGV  ILS  P +       Y  LSGTSM+ PHV+G
Sbjct: 197 NKASFSNYGRWV--------DIAAPGVGTILSTVPKLDGDGGGNYEYLSGTSMAAPHVSG 248

Query: 529 IAALIKSLHRDW-SPAAIRSALVTT 552
           +AAL+ S   D  +P  IR  L  +
Sbjct: 249 VAALVLSKFPDVFTPEQIRKLLEES 273

Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273

>gnl|CDD|240358 PTZ00321, PTZ00321, ribosomal protein L11; Provisional

 Score = 62.3 bits (151), Expect = 4e-10
 Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 8/145 (5%)

Query: 806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD--KAGYVIPVEITV 863
           K+VL   +  ++AGKA   PPVG      G+  M F K +N RT    K    + V I V
Sbjct: 47  KRVLHNWRFFIKAGKAATGPPVGQEFSKLGLKAMDFAKSFNDRTKPHFKDDVELIVRIQV 106

Query: 864 YDDRSFTFILKTPPASVLLLKAAGVEKGSKDP---KQQKVGKITIEQLRAIATEK---LP 917
           Y D+S+ F ++ PP +  +L+A   ++    P   +      +T+E    IA  K     
Sbjct: 107 YFDKSYLFTIEPPPTAWFILRALRKKRRETGPVPLRGHYCALMTLEMAYEIAKMKPRSWG 166

Query: 918 DLNCTSIESAMRIIAGTAANMGIDI 942
                 IE+ +R + G A  MG+  
Sbjct: 167 RPEYPLIETRVRRVVGQARRMGVCF 191

Length = 342

>gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]

 Score = 62.6 bits (151), Expect = 6e-10
 Identities = 40/96 (41%), Positives = 54/96 (56%), Gaps = 8/96 (8%)

Query: 467 VSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQ-GYALLSGTSMSCPH 525
           +S  VASFS+ G  +        DI APGV+ILS             Y  LSGTSM+ PH
Sbjct: 314 LSDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGDGADYVTLSGTSMAAPH 367

Query: 526 VAGIAALIKSLH-RDWSPAAIRSALVTTASQTGTDG 560
           V+G+AAL+ S +  + +PA +R+ +VTTA  T   G
Sbjct: 368 VSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSG 403

Length = 508

>gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 37/90 (41%), Positives = 47/90 (52%), Gaps = 17/90 (18%)

Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQG---------YALLSGTSMS 522
           AS+S+ GP     AV   D+ APG D  S     G  D            Y  L GTSM+
Sbjct: 204 ASYSNYGP-----AV---DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMA 255

Query: 523 CPHVAGIAALIKSLHRDWSPAAIRSALVTT 552
            PHVAG+AAL+KS++   +PA I S L +T
Sbjct: 256 APHVAGVAALMKSVNPSLTPAQIESLLQST 285

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285

>gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 11/98 (11%)

Query: 468 SPRVASFSSRGPNSM---SPAVL-KPDIVAP-GVDILSAYPPIGSKDIQGYALLSGTSMS 522
                + SS  P  +   +P V  KPD+ AP GV+              G     GTS +
Sbjct: 166 PAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVNGTVDGDG------DGPPNFFGTSAA 219

Query: 523 CPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDG 560
            PH AG+AAL+ S +   +PA IR AL +TA   G  G
Sbjct: 220 APHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPG 257

Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275

>gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 471 VASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIA 530
            ASFSS GP +     LKPD++A G  I                  +GTS SCP +AG+ 
Sbjct: 186 KASFSSIGPTA--DGRLKPDVMALGTGIYVINGD------GNITYANGTSFSCPLIAGLI 237

Query: 531 ALIKSLHRDWSPAAIRSALVTTAS 554
           A +   H +W+   I+ A++ +AS
Sbjct: 238 ACLWQAHPNWTNLQIKEAILKSAS 261

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261

>gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 11/84 (13%)

Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQ---GYALLSGTSMSCPHVAG 528
           AS+S+ G           D+VAPGV I +     GS       GY   SGTS + P  AG
Sbjct: 167 ASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGGYGSFSGTSFASPVAAG 218

Query: 529 IAALIKSLHRDWSPAAIRSALVTT 552
           +AALI S + + +PA +   L +T
Sbjct: 219 VAALILSANPNLTPAEVEDILTST 242

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242

>gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 491 IVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALV 550
           + APG +I S  P  G+    GY  +SGTS + PHV+G AAL+       +   +R  L+
Sbjct: 208 LAAPGENIYSTDPDGGN----GYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLL 263

Query: 551 TTA 553
           TTA
Sbjct: 264 TTA 266

Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267

>gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 14/97 (14%)

Query: 467 VSPRVASFSSRGPNSMS-PA---VLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMS 522
               +A FSSRG  +   P     +KPDIV  G  +       GSK   G   LSGTS++
Sbjct: 162 FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGV------YGSKLKGGCRALSGTSVA 215

Query: 523 CPHVAGIAA-LIKSLHRDWS---PAAIRSALVTTASQ 555
            P VAG  A L+ ++        PA+++ AL+ +A++
Sbjct: 216 SPVVAGAVALLLSTVPEKRDLINPASMKQALIESATR 252

SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255

>gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 48/189 (25%), Positives = 74/189 (39%), Gaps = 22/189 (11%)

Query: 143 IIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIM 202
            +G++DTG+       S +          +  +    +     + N    G    + GI 
Sbjct: 1   TVGVLDTGIDVNHPDLSGR-YIGLAYRNGYDFVDNDPDPTPDDDNNG--HGTH--VAGI- 54

Query: 203 DMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAI--HDGVDVL 260
             I A  N   G       G AP A L   K     G TD+++  A + A    + + V+
Sbjct: 55  --IAAGDNNGSG-----GVGVAPNAKLESVKVLPGSGGTDSELAGAIEWAAERPNDIRVI 107

Query: 261 SVSIGNEI-PLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAP---W-I 315
           ++S+G    P  S+    D +A+    A  KG   V +AGN G  A     + P     I
Sbjct: 108 NMSLGPVDGPPSSWSSAIDELAVNG--ADNKGSLFVVAAGNGGDYADNNPVSDPASANNI 165

Query: 316 ITVGATTID 324
           ITVGA T +
Sbjct: 166 ITVGAVTEN 174

Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277

>gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 471 VASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIA 530
           VA+FS+ G  ++       D+ APG  I S  P         Y   SGTSM+ P V+G+A
Sbjct: 221 VANFSNYGKKNV-------DVFAPGERIYSTTPD------NEYETDSGTSMAAPVVSGVA 267

Query: 531 ALIKS 535
           ALI S
Sbjct: 268 ALIWS 272

Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291

>gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II

 Score = 53.8 bits (130), Expect = 3e-07
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 10/83 (12%)

Query: 475 SSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALI- 533
           SSRGP   +   L   I APG     A   + +  +QG  L++GTSMS P+  G  AL+ 
Sbjct: 333 SSRGP--TADGALGVSISAPG----GAIASVPNWTLQGSQLMNGTSMSSPNACGGIALLL 386

Query: 534 ---KSLHRDWSPAAIRSALVTTA 553
              K+    ++P ++R AL  TA
Sbjct: 387 SGLKAEGIPYTPYSVRRALENTA 409

Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412

>gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9

 Score = 51.5 bits (124), Expect = 6e-07
 Identities = 45/205 (21%), Positives = 80/205 (39%), Gaps = 47/205 (22%)

Query: 141 GTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKG 200
           G  I +ID G     E+F+ K + +                      N +++G   F+  
Sbjct: 1   GITIAVIDAGFPKVHEAFAFKHLFK----------------------NLRILGEYDFVDN 38

Query: 201 IMDMI----NASTNTDEGLAA---GLARGGAPLAHLAIYKACWDIGCTDADV-----LKA 248
             +      +  T     +A    G+  G AP A   + +   +   ++  V     + A
Sbjct: 39  SNNTNYTDDDHGTAVLSTMAGYTPGVMVGTAPNASYYLART--EDVASETPVEEDNWVAA 96

Query: 249 FDKAIHDGVDVLSVSIG-----NEIPLFSYIDQRDS---IAIGSFHAIAKGITVVSSAGN 300
            + A   GVD++S S+G     N    ++Y D       I+  +  A +KG+ VV+SAGN
Sbjct: 97  AEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGN 156

Query: 301 DGPVAQTIVNT---APWIITVGATT 322
           +G      +     A  +++VGA  
Sbjct: 157 EGSTQWKGIGAPADAENVLSVGAVD 181

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261

>gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins

 Score = 49.1 bits (118), Expect = 3e-06
 Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)

Query: 205 INASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDA-DVLKAFDKAIHDGVDVLSVS 263
           I A  N    +      G AP A L   K   D G     D++   + AI +G+D++++S
Sbjct: 50  IAALDNGVGVV------GVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMS 103

Query: 264 IGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTA--PWIITVGAT 321
           +G               AI   +A   GI VV++AGN G    +    A  P +I VGA 
Sbjct: 104 LGGPSD-----SPALREAIKKAYA--AGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAV 156

Query: 322 TIDR 325
             + 
Sbjct: 157 DSNN 160

This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229

>gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
           D  APGVD+  A  P G     GY  +SGTS + P V    AL+        P   R+ L
Sbjct: 168 DFAAPGVDVWVA-APGG-----GYRYVSGTSFAAPFVTAALALLLQASPLA-PDDARARL 220

Query: 550 VTTASQTGTDG 560
             TA   G  G
Sbjct: 221 AATAKDLGPPG 231

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239

>gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases

 Score = 48.0 bits (115), Expect = 1e-05
 Identities = 59/247 (23%), Positives = 94/247 (38%), Gaps = 41/247 (16%)

Query: 139 GEGTIIGIIDTGVWPESESF-----SDKGMGQAPVPPHWKGICQKGEKFNSS-------N 186
           GEG ++ +ID+GV P  ++F     S     +       K     G+ +N          
Sbjct: 10  GEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYA 69

Query: 187 CNRKLIGAR-------WFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYK---ACW 236
            N   I            + GI      + N DE       +G AP A L   K      
Sbjct: 70  DNNDDILDEDDGSSHGMHVAGI-----VAGNGDEEDNGEGIKGVAPEAQLLAMKVFSNPE 124

Query: 237 DIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVS 296
                D    KA + A+  G DV+++S+G+    F  +D  +  AI    A   G+ VV 
Sbjct: 125 GGSTYDDAYAKAIEDAVKLGADVINMSLGS-TAGFVDLDDPEQQAIKR--AREAGVVVVV 181

Query: 297 SAGNDG----PVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHG 352
           +AGNDG      ++ +    P   TVG+          +T+ +       + + G++S G
Sbjct: 182 AAGNDGNSGSGTSKPLATNNPDTGTVGSPA---TADDVLTVASANKKVP-NPNGGQMS-G 236

Query: 353 FT--GLT 357
           F+  G T
Sbjct: 237 FSSWGPT 243

Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346

>gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 40/170 (23%), Positives = 62/170 (36%), Gaps = 28/170 (16%)

Query: 144 IGIIDTGVWP----ESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIK 199
           + +ID+G+ P       S S           + K +  KG            I       
Sbjct: 4   VAVIDSGIDPDHPDLKNSISS----------YSKNLVPKGGYDGKEAGETGDINDIVDKL 53

Query: 200 GIMDMINASTNTDEGLAAGLARGGAPLAHLAIYK-ACWDIGCTDADVLKAFDKAIHDGVD 258
           G    +      +  +      G AP   +  Y+          + ++KA   A  DGVD
Sbjct: 54  GHGTAVAGQIAANGNIK-----GVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVD 108

Query: 259 VLSVSIG-NEIPLFSYIDQRDSI-----AIGSFHAIAKGITVVSSAGNDG 302
           V+++S+G   I    Y D          AI   +A +KG  VV++AGNDG
Sbjct: 109 VINLSLGGYLIIGGEYEDDDVEYNAYKKAIN--YAKSKGSIVVAAAGNDG 156

Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294

>gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 13/112 (11%)

Query: 214 GLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIG----NEIP 269
           G A G+  G AP A L   K   D G + + ++   + A+    DV+S+S+G    +E P
Sbjct: 56  GGAKGVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYSEDP 115

Query: 270 LFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGAT 321
           L   ++   +           G   V SAGN+G        +A   ++VGA 
Sbjct: 116 LEEAVEALSN---------QTGALFVVSAGNEGHGTSGSPGSAYAALSVGAV 158

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254

>gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional

 Score = 48.0 bits (114), Expect = 2e-05
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 10/68 (14%)

Query: 491 IVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAI----R 546
           + APG +I S +P         Y  L+GTSM+ PHVA IA+LI S++   S   +    +
Sbjct: 534 LAAPGTNIYSTFP------KNSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILK 587

Query: 547 SALVTTAS 554
            ++V   S
Sbjct: 588 ESIVQLPS 595

Length = 639

>gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 14/94 (14%)

Query: 471 VASFSSRGPNSMSPA-VLKPDIVAPGVDILSAYPPIGSKDIQG----YALLSGTSMSCPH 525
           V S+SSRGP   S A   KPD+ A G    +    + S         + L  GTSM+ P 
Sbjct: 221 VVSWSSRGP---SIAGDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPM 277

Query: 526 VAGIAALIKSLHRD------WSPAAIRSALVTTA 553
            AG AAL+ S  ++      + P  +R+ L++TA
Sbjct: 278 TAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311

>gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 43/217 (19%), Positives = 65/217 (29%), Gaps = 61/217 (28%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
           G G  +G+ID+G+      F+ +                              +    + 
Sbjct: 2   GAGVKVGVIDSGIDLSHPEFAGR------------------------------VSEASYY 31

Query: 199 KGIMDMINASTNTDEG--------LAA----GLARGGAPLAHLAIYKACWDIGCT--DAD 244
             + D   AS    +         +AA    G   G AP A L   +A    G T  DAD
Sbjct: 32  VAVNDAGYASNGDGDSHGTHVAGVIAAARDGGGMHGVAPDATLYSARASASAGSTFSDAD 91

Query: 245 VLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGS--------FHAIAKGITVVS 296
           +  A+D     GV +++ S G    + +        A             A   G   V 
Sbjct: 92  IAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVF 151

Query: 297 SAGNDGPV-AQTIVNTAPW--------IITVGATTID 324
           +AGNDG           P+         I V A   +
Sbjct: 152 AAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN 188

Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267

>gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 49/195 (25%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
           G G  + + DTG+  +               PH++ + ++    N    +  L G   F+
Sbjct: 7   GAGVKVAVFDTGL-AKDH-------------PHFRNVKERTNWTNEKTLDDGL-GHGTFV 51

Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADV------LKAFDKA 252
            G++    AS+            G AP A + I++       T+  V      L AF+ A
Sbjct: 52  AGVI----ASSREQ-------CLGFAPDAEIYIFRVF-----TNNQVSYTSWFLDAFNYA 95

Query: 253 IHDGVDVLSVSIGNEIPLF---SYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIV 309
           I   +DVL++SIG   P F    ++D+   +        A  I +VS+ GNDGP+  T+ 
Sbjct: 96  ILTKIDVLNLSIGG--PDFMDKPFVDKVWELT-------ANNIIMVSAIGNDGPLYGTLN 146

Query: 310 NTAPWIITVGATTID 324
           N A  +  +G   ID
Sbjct: 147 NPADQMDVIGVGGID 161

SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255

>gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins

 Score = 45.6 bits (109), Expect = 5e-05
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 20/93 (21%)

Query: 241 TDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGN 300
           T +D +KA D A+  G  +++ S G   P  +    RD+IA     AI  GI  V++AGN
Sbjct: 105 TTSDAIKAIDYAVDMGAKIINNSWGGGGPSQAL---RDAIA----RAIDAGILFVAAAGN 157

Query: 301 DG---------PVAQTIVNTAPWIITVGATTID 324
           DG         P +         II+V AT  +
Sbjct: 158 DGTNNDKTPTYPAS----YDLDNIISVAATDSN 186

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259

>gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease, PatA/PatG family

 Score = 45.9 bits (109), Expect = 8e-05
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 10/67 (14%)

Query: 491 IVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH----RDWSPAAIR 546
           I+APG +IL A P  G + ++    LSGTS + P V G+AAL+ SL         P A+R
Sbjct: 138 ILAPGENILGAQP--GGETVR----LSGTSFATPVVTGVAALLLSLQLQQGETPDPQAVR 191

Query: 547 SALVTTA 553
           +AL+ +A
Sbjct: 192 TALLNSA 198

This model describes a protease domain associated with the maturation of various members of the cyanobactin family of ribosomally produced, heavily modified bioactive metabolites. Members include the PatA protein and C-terminal domain of the PatG protein of Prochloron didemni, TenA and a region of TenG from Nostoc spongiaeforme var. tenue, etc. Length = 602

>gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5

 Score = 45.3 bits (108), Expect = 9e-05
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 16/87 (18%)

Query: 222 GGAPLAHLAIYKACWDIGCTDADVL-KAFDKAIHDGVDVLSVSIG-----NEIPLFSYID 275
           G AP A L  Y+     G T  D +  AF +A  DG DV++ S+G     +E P  + + 
Sbjct: 89  GVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPSGWSEDPW-AVVA 147

Query: 276 QRDSIAIGSFHAIAKGITVVSSAGNDG 302
            R  I          G+ V  +AGNDG
Sbjct: 148 SR--IV-------DAGVVVTIAAGNDG 165

gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312

>gnl|CDD|173788 cd04056, Peptidases_S53, Peptidase domain in the S53 family

 Score = 45.4 bits (108), Expect = 9e-05
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 24/117 (20%)

Query: 224 APLAHLAIYKACWDIGCTDADVLKAFDKAIHD---GVDVLSVSIG---NEIPLFSYIDQR 277
           AP A++ +Y A    G      L AF  A+ D      V+S+S G     +P  +Y  + 
Sbjct: 87  APGANITLYFAP---GTVTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPP-AYAQRV 142

Query: 278 DSIAIGSFHAIAKGITVVSSAGNDG--------PVAQTIVN---TAPWIITVGATTI 323
            ++      A A+GITV++++G+ G              V+   ++P++  VG TT+
Sbjct: 143 CNLF---AQAAAQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTL 196

Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 361

>gnl|CDD|216938 pfam02225, PA, PA domain

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 362 IAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTD 421
              + D A  C    L  +   GKI+L      +      A +  +AG  G+I     T 
Sbjct: 12  YVGNGDDAGGCCPEDLADSDVKGKIVLVRRGGCS--FVEKAENAQRAGAAGVIIYNNDTG 69

Query: 422 GLD------SCNLIPCIKVNYEVGTQI 442
           GL       S   IP + ++YE G  +
Sbjct: 70  GLGGTVGDPSDVTIPVVFISYEDGEAL 96

The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96

>gnl|CDD|173813 cd07488, Peptidases_S8_2, Peptidase S8 family domain, uncharacterized subfamily 2

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 14/72 (19%)

Query: 488 KPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHR------DWS 541
           K  IVAPG +      P G  D      +SGTS S P V GI AL+   +       + +
Sbjct: 184 KVLIVAPGSNY---NLPDGKDDF-----VSGTSFSAPLVTGIIALLLEFYDRQYKKGNNN 235

Query: 542 PAAIRSALVTTA 553
             A+R+ + ++ 
Sbjct: 236 LIALRALVSSSV 247

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 247

>gnl|CDD|173819 cd07494, Peptidases_S8_10, Peptidase S8 family domain, uncharacterized subfamily 10

 Score = 42.5 bits (100), Expect = 8e-04
 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 492 VAPG--VDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
           V PG  +D   A  P G+    G+ + SGTS + P VAG+ AL+   +   SP   RS L
Sbjct: 219 VPPGSQLDRSCAAFPDGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLL 278

Query: 550 VTTAS 554
             TA 
Sbjct: 279 NKTAR 283

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 298

>gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8

 Score = 41.6 bits (98), Expect = 9e-04
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 491 IVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALV 550
             A GVDI++  P         Y  +SG S + PHV G+ AL+ S   D     ++  L 
Sbjct: 165 FSADGVDIIAPAPHGR------YLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQ 218

Query: 551 TTAS 554
             A 
Sbjct: 219 RLAV 222

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222

>gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 10/67 (14%)

Query: 491 IVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH----RDWSPAAIR 546
           I+APG +IL A               SGTS +   VAGIAAL+ SL         P A+R
Sbjct: 189 ILAPGENILGAALG------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVR 242

Query: 547 SALVTTA 553
            AL+ TA
Sbjct: 243 RALLETA 249

Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267

>gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 14/93 (15%)

Query: 474 FSSRGPNSMSPAVLKPDIVAPG------------VDILSAYPPIGSKDIQGYALLSGTSM 521
            +S GP S  P  +KPD+VA G               LS    + S    G+  + GTS 
Sbjct: 201 TTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSF 258

Query: 522 SCPHVAGIAALIKSLHRDWSPAAIRSALVTTAS 554
           + P  A +AA + +   + SP  IR+ L+ +A 
Sbjct: 259 AAPLAARLAAGLFAELPELSPETIRALLIHSAE 291

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	954
COG0080	141	RplK Ribosomal protein L11 [Translation, ribosomal	100.0
TIGR01632	140	L11_bact 50S ribosomal protein L11. This model rep	100.0
CHL00127	140	rpl11 ribosomal protein L11; Validated	100.0
PLN03072	166	60S ribosomal protein L12; Provisional	100.0
PRK01143	163	rpl11p 50S ribosomal protein L11P; Validated	100.0
PRK00140	141	rplK 50S ribosomal protein L11; Validated	100.0
cd04852	307	Peptidases_S8_3 Peptidase S8 family domain, unchar	100.0
smart00649	132	RL11 Ribosomal protein L11/L12.	100.0
cd00349	131	Ribosomal_L11 Ribosomal protein L11. Ribosomal pro	100.0
PRK14539	196	50S ribosomal protein L11/unknown domain fusion pr	100.0
PTZ00321	342	ribosomal protein L11; Provisional	100.0
KOG3257	168	consensus Mitochondrial/chloroplast ribosomal prot	100.0
PTZ00262	639	subtilisin-like protease; Provisional	100.0
cd05562	275	Peptidases_S53_like Peptidase domain in the S53 fa	100.0
cd07479	255	Peptidases_S8_SKI-1_like Peptidase S8 family domai	100.0
cd07478	455	Peptidases_S8_CspA-like Peptidase S8 family domain	100.0
cd07475	346	Peptidases_S8_C5a_Peptidase Peptidase S8 family do	100.0
cd07497	311	Peptidases_S8_14 Peptidase S8 family domain, uncha	100.0
cd07476	267	Peptidases_S8_thiazoline_oxidase_subtilisin-like_p	100.0
cd07489	312	Peptidases_S8_5 Peptidase S8 family domain, unchar	100.0
PTZ00105	140	60S ribosomal protein L12; Provisional	100.0
cd07474	295	Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam	100.0
cd05561	239	Peptidases_S8_4 Peptidase S8 family domain, unchar	100.0
cd07483	291	Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa	100.0
cd07493	261	Peptidases_S8_9 Peptidase S8 family domain, unchar	100.0
cd07481	264	Peptidases_S8_BacillopeptidaseF-like Peptidase S8	100.0
cd04857	412	Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid	100.0
cd07487	264	Peptidases_S8_1 Peptidase S8 family domain, unchar	100.0
cd07494	298	Peptidases_S8_10 Peptidase S8 family domain, uncha	100.0
cd07485	273	Peptidases_S8_Fervidolysin_like Peptidase S8 famil	100.0
cd04077	255	Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8	100.0
KOG1153	501	consensus Subtilisin-related protease/Vacuolar pro	100.0
cd07484	260	Peptidases_S8_Thermitase_like Peptidase S8 family	100.0
cd04847	291	Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil	100.0
cd04842	293	Peptidases_S8_Kp43_protease Peptidase S8 family do	100.0
cd07490	254	Peptidases_S8_6 Peptidase S8 family domain, unchar	100.0
cd07496	285	Peptidases_S8_13 Peptidase S8 family domain, uncha	100.0
cd07473	259	Peptidases_S8_Subtilisin_like Peptidase S8 family	100.0
KOG0886	167	consensus 40S ribosomal protein S2 [Translation, r	100.0
cd07498	242	Peptidases_S8_15 Peptidase S8 family domain, uncha	100.0
cd04843	277	Peptidases_S8_11 Peptidase S8 family domain, uncha	100.0
cd07477	229	Peptidases_S8_Subtilisin_subset Peptidase S8 famil	100.0
cd07480	297	Peptidases_S8_12 Peptidase S8 family domain, uncha	100.0
cd07491	247	Peptidases_S8_7 Peptidase S8 family domain, unchar	100.0
PF00082	282	Peptidase_S8: Subtilase family This is family S8 i	100.0
cd07492	222	Peptidases_S8_8 Peptidase S8 family domain, unchar	100.0
cd07482	294	Peptidases_S8_Lantibiotic_specific_protease Peptid	100.0
cd04059	297	Peptidases_S8_Protein_convertases_Kexins_Furin-lik	100.0
cd04848	267	Peptidases_S8_Autotransporter_serine_protease_like	100.0
KOG4266	1033	consensus Subtilisin kexin isozyme-1/site 1 protea	100.0
KOG1114	1304	consensus Tripeptidyl peptidase II [Posttranslatio	99.97
cd00306	241	Peptidases_S8_S53 Peptidase domain in the S8 and S	99.96
cd07488	247	Peptidases_S8_2 Peptidase S8 family domain, unchar	99.95
PF00298	69	Ribosomal_L11: Ribosomal protein L11, RNA binding	99.9
PF03946	60	Ribosomal_L11_N: Ribosomal protein L11, N-terminal	99.88
COG1404	508	AprE Subtilisin-like serine proteases [Posttransla	99.86
KOG3526	629	consensus Subtilisin-like proprotein convertase [P	99.69
cd04056	361	Peptidases_S53 Peptidase domain in the S53 family.	99.69
cd02120	126	PA_subtilisin_like PA_subtilisin_like: Protease-as	99.3
cd02133	143	PA_C5a_like PA_C5a_like: Protease-associated domai	99.21
PF05922	82	Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP	98.92
cd04816	122	PA_SaNapH_like PA_SaNapH_like: Protease-associated	98.7
PF02225	101	PA: PA domain; InterPro: IPR003137 The PA (Proteas	98.66
cd02122	138	PA_GRAIL_like PA _GRAIL_like: Protease-associated	98.63
cd02129	120	PA_hSPPL_like PA_hSPPL_like: Protease-associated d	98.62
cd02130	122	PA_ScAPY_like PA_ScAPY_like: Protease-associated d	98.56
cd04818	118	PA_subtilisin_1 PA_subtilisin_1: Protease-associat	98.54
cd02127	118	PA_hPAP21_like PA_hPAP21_like: Protease-associated	98.54
cd00538	126	PA PA: Protease-associated (PA) domain. The PA dom	98.5
cd02126	126	PA_EDEM3_like PA_EDEM3_like: protease associated d	98.48
cd02124	129	PA_PoS1_like PA_PoS1_like: Protease-associated (PA	98.42
cd02132	139	PA_GO-like PA_GO-like: Protease-associated domain	98.4
cd04813	117	PA_1 PA_1: Protease-associated (PA) domain subgrou	98.38
cd02125	127	PA_VSR PA_VSR: Protease-associated (PA) domain-con	98.37
cd04817	139	PA_VapT_like PA_VapT_like: Protease-associated dom	98.34
cd02123	153	PA_C_RZF_like PA_C-RZF_ like: Protease-associated	98.29
COG4934	1174	Predicted protease [Posttranslational modification	98.03
cd04819	127	PA_2 PA_2: Protease-associated (PA) domain subgrou	98.01
PF06280	112	DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0	97.84
KOG3525	431	consensus Subtilisin-like proprotein convertase [P	97.61
cd04815	134	PA_M28_2 PA_M28_2: Protease-associated (PA) domain	97.09
cd02128	183	PA_TfR PA_TfR: Protease-associated domain containi	96.93
cd04822	151	PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do	96.3
cd04814	142	PA_M28_1 PA_M28_1: Protease-associated (PA) domain	96.24
KOG2442	541	consensus Uncharacterized conserved protein, conta	95.87
cd04820	137	PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do	95.81
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	94.53
cd02121	220	PA_GCPII_like PA_GCPII_like: Protease-associated d	94.43
cd02131	153	PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso	94.42
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	93.35
PF14874	102	PapD-like: Flagellar-associated PapD-like	92.03
KOG3920	193	consensus Uncharacterized conserved protein, conta	88.76
PF11614	118	FixG_C: IG-like fold at C-terminal of FixG, putati	84.98
cd04821	157	PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do	82.04

>COG0080 RplK Ribosomal protein L11 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.7e-52  Score=390.17  Aligned_cols=140  Identities=60%  Similarity=0.987  Sum_probs=137.6

Q ss_pred             cceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHHHH
Q 042478          806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKA  885 (954)
Q Consensus       806 ~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k~  885 (954)
                      ||++++|+|+++||+|+|+|||||+|||+|||+|+|||+||++|++++|++|||+||||+||+|+|++++||+|+||+|+
T Consensus         2 ~k~~~~ikl~v~aGkA~p~PpvGPALG~~Gvni~~f~k~fN~~T~~~~G~~vPV~Itv~~drsftf~~ktPPas~LlkKa   81 (141)
T COG0080           2 KKVVKIIKLQVPAGKANPSPPVGPALGQLGVNIMEFCKEFNAATKDEKGLPVPVVITVYEDRSFTFIVKTPPASALLKKA   81 (141)
T ss_pred             CccceEEEEEecccccCCCCCCCccccccCCCHHHHHHHHHHHhhccCCCeeeEEEEEEcCCcEEEEECCCCHHHHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCC
Q 042478          886 AGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPP  945 (954)
Q Consensus       886 ~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~  945 (954)
                      +|+++||++|+++++|+||++||+|||++|++||++.+|++++|+|+||||||||+||++
T Consensus        82 ~g~~~Gs~~p~k~~vG~lt~~qv~eIA~~K~~dl~a~~l~aA~k~I~GTa~SMGv~Veg~  141 (141)
T COG0080          82 AGIEKGSGKPNKNKVGKLTLAQVREIAKTKMPDLNAKDLEAAVKEILGTARSMGVTVEGK  141 (141)
T ss_pred             hCCCCCCCCCCcceeeeeeHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhceEEeecC
Confidence            999999999999999999999999999999999999999999999999999999999974

>TIGR01632 L11_bact 50S ribosomal protein L11

Probab=100.00  E-value=6.1e-50  Score=384.33  Aligned_cols=139  Identities=67%  Similarity=1.049  Sum_probs=136.3

Q ss_pred             cceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcC-CCCceeeEEEEEeCCCeEEEEEeCCCHHHHHHH
Q 042478          806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVYDDRSFTFILKTPPASVLLLK  884 (954)
Q Consensus       806 ~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~-~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k  884 (954)
                      |+++++|+|+|+||+|+|+|||||+|||+|||+|+||||||++|++ |+|++|||+|+||+||+|+|++++||+||||+|
T Consensus         1 k~~~~~ikl~v~aG~A~p~PplGP~LG~~Gini~~f~k~fN~~T~~~~~G~~vpV~Itv~~drsf~~~v~~Pp~s~ll~k   80 (140)
T TIGR01632         1 KKIVGIIKLQVPAGQANPAPPVGPALGQRGVNIMEFCKQFNARTADYEPGLPVPVVITVYEDKSFTFIVKTPPVSYLLKK   80 (140)
T ss_pred             CceEEEEEEEEeccccCCCCCCcccccccCCCHHHHHHHHHHHHhhhcCCCeEEEEEEEeCCCeEEEEEcCCCHHHHHHH
Confidence            3578999999999999999999999999999999999999999999 899999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcC
Q 042478          885 AAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDP  944 (954)
Q Consensus       885 ~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~  944 (954)
                      ++|+++|+++|+++++|+||++||+|||++|++|+++.+|+++||+|+||||||||+|++
T Consensus        81 aag~~~gs~~p~~~~~G~it~~qv~eIA~~K~~d~~~~~l~~~vk~v~GTarSmGi~V~~  140 (140)
T TIGR01632        81 AAGVEKGSKNPKKEKVGKITRKQVREIAEIKMSDLNTKDIEAAMKIIAGTAKSMGIEIVG  140 (140)
T ss_pred             HhCCCCCCCCCCCeEEeEecHHHHHHHHHHHHHHhCcccHHHHHHHhheeHeeceEEEeC
Confidence            999999999999999999999999999999999999999999999999999999999985

This model represents bacterial, chloroplast, and most mitochondrial forms of 50S ribosomal protein L11.

>CHL00127 rpl11 ribosomal protein L11; Validated

Probab=100.00  E-value=1.5e-49  Score=381.67  Aligned_cols=140  Identities=69%  Similarity=1.064  Sum_probs=137.5

Q ss_pred             cccceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHH
Q 042478          804 KAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLL  883 (954)
Q Consensus       804 ~~~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~  883 (954)
                      |+|++.++|+|+++||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+|+||+||+|+|++++||+||||+
T Consensus         1 m~k~~~~~ikl~v~aG~A~p~PplGP~LG~~Gini~~f~k~fN~~T~~~~g~~vpV~Itv~~drsf~~~v~~Pp~s~ll~   80 (140)
T CHL00127          1 MAKKKLAIIKLALPAGKATPAPPVGPALGQHGVNINLFCKEYNARTKDKIGLIIPVEISVYEDKSYTFILKTPPASVLLA   80 (140)
T ss_pred             CccccccEEEEEEecCccCCCCCCcccccccCCCHHHHHHHHHHHhhhcCCCeEEEEEEEeCCceEEEEEcCCCHHHHHH
Confidence            67888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEc
Q 042478          884 KAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID  943 (954)
Q Consensus       884 k~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~  943 (954)
                      |++|+++|+++|+++++|+||++||+|||++|++|+++.+|+++||+|+||||||||+|.
T Consensus        81 ka~gi~~gs~~p~~~~~G~it~~~v~eIA~~K~~d~~~~~l~~~vk~v~GTa~SmGi~V~  140 (140)
T CHL00127         81 KAAGIKKGSGEPNKKKVGSITIKQLEEIAQIKLPDLNTISLSKAIKIIEGTAKNMGISIK  140 (140)
T ss_pred             HHhCCCcCCCCCCCeecceecHHHHHHHHHHHhhhhccccHHHHHHHhHeeheeceEEeC
Confidence            999999999999999999999999999999999999999999999999999999999983

>PLN03072 60S ribosomal protein L12; Provisional

Probab=100.00  E-value=1.9e-49  Score=389.07  Aligned_cols=153  Identities=20%  Similarity=0.351  Sum_probs=146.1

Q ss_pred             CCccceeeecCCCCCCccccccceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcC-CCCceeeEEEEE
Q 042478          785 TPRFLTVIAMAPPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITV  863 (954)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~-~~g~~i~v~i~v  863 (954)
                      ||+     +|+|++          .++|+|+|+||+|+|+|||||+|||+|||+|+||||||++|++ |+|++|||+|||
T Consensus         1 m~~-----~~~~~~----------~~~i~l~v~aG~A~P~PplGPaLG~~GvNi~~f~k~fN~~T~~~~~G~~VpV~Itv   65 (166)
T PLN03072          1 MPP-----KLDPSQ----------VVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTV   65 (166)
T ss_pred             CCC-----CCCCCc----------cEEEEEEEEcCccCCCCCCccccccCCCCHHHHHHHHHHHhhhhcCCCeEEEEEEE
Confidence            566     888877          5689999999999999999999999999999999999999996 999999999999


Q ss_pred             eCCCeEEEEEeCCCHHHHHHHHhCCCCCCCC--CCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceE
Q 042478          864 YDDRSFTFILKTPPASVLLLKAAGVEKGSKD--PKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGID  941 (954)
Q Consensus       864 ~~dr~~~~~~~~p~~s~li~k~~~~~~~~~~--~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~  941 (954)
                      |+ |+|+|++ +||+|+||+|++|+++|+++  |+++++|+||++||+|||++|++|+++++|+++||+|+||||||||+
T Consensus        66 ~~-rsf~~~v-~Pp~s~LLkKa~g~~kgs~~~~~~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~avk~VlGTarSmGi~  143 (166)
T PLN03072         66 QN-RQAKVSV-VPSAAALVIKALKEPERDRKKVKNIKHNGNISLDDVIEIAKIMRPRSMAKELAGTVKEILGTCVSVGCT  143 (166)
T ss_pred             EC-CeEEEEe-CCCHHHHHHHHhCCCCCCCccCCCCeeeeeecHHHHHHHHHHHHHHhCcccHHHHHHHhHheeeeCeEE
Confidence            95 9999999 99999999999999999998  67799999999999999999999999999999999999999999999


Q ss_pred             EcCCCchhhhccC
Q 042478          942 IDPPVLETKKKEL  954 (954)
Q Consensus       942 v~~~~~~~~~~~~  954 (954)
                      |+++.|+|++++|
T Consensus       144 V~gk~pkev~~~i  156 (166)
T PLN03072        144 VDGKDPKDLQQEI  156 (166)
T ss_pred             EeCCCHHHHHHHH
Confidence            9999999998864

>PRK01143 rpl11p 50S ribosomal protein L11P; Validated

Probab=100.00  E-value=2.5e-49  Score=389.09  Aligned_cols=145  Identities=34%  Similarity=0.628  Sum_probs=142.6

Q ss_pred             EEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEE-eCCCeEEEEEeCCCHHHHHHHHhCC
Q 042478          810 GLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITV-YDDRSFTFILKTPPASVLLLKAAGV  888 (954)
Q Consensus       810 ~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v-~~dr~~~~~~~~p~~s~li~k~~~~  888 (954)
                      ++|+|+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+||| |+||+|+|++++||+||||+|++|+
T Consensus         3 ~~ikl~v~aG~A~p~PplGPaLG~~Gini~~f~k~fN~~T~~~~g~~vpV~Itv~~~drsf~~~vk~Pp~s~ll~kaag~   82 (163)
T PRK01143          3 KVVEVLVEGGKATPGPPLGPALGPLGLNVKQVVQEINEKTKDFKGMQVPVKVIVDTDTKKFEIEVGIPPTTALIKKELGI   82 (163)
T ss_pred             eEEEEEEecCccCCCCCCcccccccCCCHHHHHHHHHHHhhhcCCCeEeEEEEEEeCCceEEEEECCCCHHHHHHHHhCC
Confidence            589999999999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             CCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCCCchhhhccC
Q 042478          889 EKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKKEL  954 (954)
Q Consensus       889 ~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~~~~~~~~~  954 (954)
                      ++|+++|+++++|+||++||+|||+.|++|+++++|+++||+|+||||||||+|+++.|+++.++|
T Consensus        83 ~kgs~~p~~~~vG~It~~qv~eIA~~K~~d~~~~~l~~~vk~VlGTarSmGi~V~g~~pkev~~~i  148 (163)
T PRK01143         83 EKGSGEPGHEVVGNLSFEQVVKIAIMKKDDLLSYDLKAAVKEVLGTCVSMGVTVEGKDPKEVQKEV  148 (163)
T ss_pred             cCCCCCCCCceeeeecHHHHHHHHHHHhhhhccccHHHHHHHHHhhHhhceEEEecCCHHHHHHHc
Confidence            999999999999999999999999999999999999999999999999999999999999998865

>PRK00140 rplK 50S ribosomal protein L11; Validated

Probab=100.00  E-value=2.7e-49  Score=381.43  Aligned_cols=141  Identities=68%  Similarity=1.050  Sum_probs=138.6

Q ss_pred             cccceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHH
Q 042478          804 KAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLL  883 (954)
Q Consensus       804 ~~~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~  883 (954)
                      |+|++.++|+|+++||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+|+||+||+|+|++++||+||||+
T Consensus         1 m~k~~~~~ikl~v~aG~A~p~PplgP~LG~~Gini~~f~k~fN~~T~~~~g~~vpV~i~v~~drsf~~~v~~Pp~s~ll~   80 (141)
T PRK00140          1 MAKKVVGYIKLQIPAGKANPAPPVGPALGQRGVNIMEFCKAFNARTQDQKGLPIPVVITVYEDRSFTFITKTPPASVLLK   80 (141)
T ss_pred             CCcccceEEEEEEecCccCCCCCCcccccccCCCHHHHHHHHHHHHhhcCCCeEEEEEEEecCCeEEEEEcCCCHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcC
Q 042478          884 KAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDP  944 (954)
Q Consensus       884 k~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~  944 (954)
                      |++|+++|+++|+++++|+||++||||||++|++|+++++|+++||+|+|||+||||+|++
T Consensus        81 k~~g~~~gs~~p~~~~vG~it~~~v~eIA~~K~~d~~~~~l~~~vk~VlGTa~SmGi~V~g  141 (141)
T PRK00140         81 KAAGIEKGSGEPNKEKVGKITRAQVREIAETKMPDLNAADIEAAMRMIAGTARSMGIVVEG  141 (141)
T ss_pred             HHhCCCCCCCCCCCeEEeeEcHHHHHHHHHHHHHhhCCCcHHHHHHHhheeeeEeeEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999999985

>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3

Probab=100.00  E-value=3.9e-47  Score=423.39  Aligned_cols=273  Identities=55%  Similarity=0.880  Sum_probs=236.3

Q ss_pred             eeccccccccccccccccCccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCc
Q 042478          110 LKLHTTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNR  189 (954)
Q Consensus       110 ~~l~t~~s~~~~gl~~~~~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~  189 (954)
                      ++|+++++|+|+|+.... ...+|..+.+|+||+|||||||||++||+|.+....  +++..|.+.|..+..+....||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   77 (307)
T cd04852           1 YQLHTTRSPDFLGLPGAW-GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGG--PYPHTWPGDCVTGEDFNPFSCNN   77 (307)
T ss_pred             CCccccCCHHHcCCCCCC-CcccccccCCCCccEEEEEeCCCCCCCcCcccCCCC--CCCCCCCCcccCCCCcCccCcCC
Confidence            478999999999998531 112577899999999999999999999999988777  88899999999998888889999


Q ss_pred             cccceeccccCCCC---------------CCCchhhhcccccccc--------------ceeccCCCcEEEEEEecCC-C
Q 042478          190 KLIGARWFIKGIMD---------------MINASTNTDEGLAAGL--------------ARGGAPLAHLAIYKACWDI-G  239 (954)
Q Consensus       190 kiiga~~~~~~~~~---------------~~G~GTa~v~G~a~G~--------------~~GvAP~A~L~~yKv~~~~-g  239 (954)
                      |++|+++|.+++..               .+|||| |++|+++|.              +.||||+|+|+.+|+++.. .
T Consensus        78 ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT-~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~  156 (307)
T cd04852          78 KLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGT-HTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGG  156 (307)
T ss_pred             eEEEEEEcccchhhccCcccccCCCCCccCCCCch-hhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCC
Confidence            99999999876432               127999 999987663              5799999999999999874 5


Q ss_pred             CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEc
Q 042478          240 CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVG  319 (954)
Q Consensus       240 ~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVg  319 (954)
                      +..+++++||++|+++|++|||||||.... . .+.  +.+..++..+.++|++||+||||+|+...+.++..||+++||
T Consensus       157 ~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~-~-~~~--~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vg  232 (307)
T cd04852         157 CFGSDILAAIDQAIADGVDVISYSIGGGSP-D-PYE--DPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVA  232 (307)
T ss_pred             ccHHHHHHHHHHHHHcCCCEEEeCCCCCCC-C-ccc--CHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEE
Confidence            889999999999999999999999998752 2 344  788888999999999999999999988888889999999999


Q ss_pred             ccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHH
Q 042478          320 ATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQ  399 (954)
Q Consensus       320 As~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~  399 (954)
                      |++                                                                             
T Consensus       233 a~~-----------------------------------------------------------------------------  235 (307)
T cd04852         233 AST-----------------------------------------------------------------------------  235 (307)
T ss_pred             ecc-----------------------------------------------------------------------------
Confidence            621                                                                             


Q ss_pred             HHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCC
Q 042478          400 SAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGP  479 (954)
Q Consensus       400 ~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP  479 (954)
                                                                                                      
T Consensus       236 --------------------------------------------------------------------------------  235 (307)
T cd04852         236 --------------------------------------------------------------------------------  235 (307)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCcCCeEEecCCceEecCCCC----CCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478          480 NSMSPAVLKPDIVAPGVDILSAYPPI----GSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTAS  554 (954)
Q Consensus       480 ~~~~~~~lKPDI~APG~~I~sa~~~~----~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~  554 (954)
                             +||||+|||++|+++++..    .......|..++|||||||+|||++|||+|++|+|+|.+||++|++||+
T Consensus       236 -------~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~  307 (307)
T cd04852         236 -------LKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY  307 (307)
T ss_pred             -------CccceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence                   4679999999999998741    1222478999999999999999999999999999999999999999985

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>smart00649 RL11 Ribosomal protein L11/L12

Probab=100.00  E-value=2.1e-47  Score=365.28  Aligned_cols=132  Identities=63%  Similarity=1.023  Sum_probs=130.5

Q ss_pred             EEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHHHHhCCCCC
Q 042478          812 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKG  891 (954)
Q Consensus       812 i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k~~~~~~~  891 (954)
                      |+|+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+|+||+||+|+|++++||+||||+|++|+++|
T Consensus         1 ikl~v~aG~A~p~PplgP~LG~~Gini~~f~k~fN~~T~~~~g~~vpV~I~v~~dksf~~~v~~P~~s~ll~k~~g~~kg   80 (132)
T smart00649        1 IKLQIPAGKANPAPPLGPALGQLGINIMEFCKEFNARTKDKKGLPIPVKITVYNDKSFTFIIKTPPASFLLKKAAGIEKG   80 (132)
T ss_pred             CEEEEecCccCCCCCcccccccCCCCHHHHHHHHHHHHhhcCCCeEeEEEEEeCCCeEEEEEcCCCHHHHHHHHhCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEc
Q 042478          892 SKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID  943 (954)
Q Consensus       892 ~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~  943 (954)
                      +++|+++++|+||++||||||++|++|+++++|+++||+|+||||||||+|+
T Consensus        81 s~~p~~~~~g~it~~~v~eIA~~K~~d~~~~~l~~~~k~V~GTa~SmGi~V~  132 (132)
T smart00649       81 SKKPGKKKVGNITLDQVYEIAKIKRPDLNAKDLEAAVKEILGTARSMGITVE  132 (132)
T ss_pred             CCCCCCeeeeEEcHHHHHHHHHHHHHHhcchhHHHHHHHHHhhHhcceEEeC
Confidence            9999999999999999999999999999999999999999999999999996

>cd00349 Ribosomal_L11 Ribosomal protein L11

Probab=100.00  E-value=1.5e-46  Score=358.90  Aligned_cols=131  Identities=63%  Similarity=1.014  Sum_probs=129.5

Q ss_pred             EEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHHHHhCCCCC
Q 042478          812 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKG  891 (954)
Q Consensus       812 i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k~~~~~~~  891 (954)
                      |+|+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+|+||+||+|+|++++||+||||+|++|+++|
T Consensus         1 ikl~v~aG~A~p~PplgP~LG~~Gin~~~f~k~fN~~T~~~~g~~vpV~itv~~dksf~~~v~~Pp~s~ll~ka~g~~kg   80 (131)
T cd00349           1 IKLQVPAGKASPAPPLGPALGQLGVNIMKFCKEFNARTKDYKGLPVPVKITVYNDRSFTFEVKTPPASALLKKAAGIEKG   80 (131)
T ss_pred             CEEEEecCccCCCCCcccccccCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCCCeEEEEEcCCCHHHHHHHHhCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEE
Q 042478          892 SKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI  942 (954)
Q Consensus       892 ~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v  942 (954)
                      +++|+++++|+||++||||||++|++|+++++|+++||+|+||||||||+|
T Consensus        81 s~~~~~~~~g~it~~~v~eIA~~K~~dl~~~~l~~~vk~v~GTa~SmGi~V  131 (131)
T cd00349          81 SKKPNKEKVGNITLDQVYEIAKIKLPDLNAKTLKSAVKEILGTARSMGITV  131 (131)
T ss_pred             CCCCCCeeeeeecHHHHHHHHHHHHhhhcchhHHHHHHHHHhhHhhCeEEC
Confidence            999999999999999999999999999999999999999999999999986

Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal protein L12, which is distinct from the L12 involved in the formation of the L7/L12 stalk. The C-terminal domain (CTD) of L11 is essential for binding 23S rRNA, while the N-terminal domain (NTD) contains the binding site for the antibiotics thiostrepton and micrococcin. L11 and 23S rRNA form an essential part of the GTPase-associated region (GAR). Based on differences in the relative positions of the L11 NTD and CTD during the translational cycle, L11 is proposed to play a significant role in the binding of initiation factors, elongation factors, and release factors to the ribosome. Several factors, including the class I release factors RF1 and RF2, are known to interact directly with L11. In eukaryotes, L11 has been im

>PRK14539 50S ribosomal protein L11/unknown domain fusion protein; Provisional

Probab=100.00  E-value=3.1e-46  Score=370.98  Aligned_cols=139  Identities=46%  Similarity=0.706  Sum_probs=134.4

Q ss_pred             cccceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHH
Q 042478          804 KAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLL  883 (954)
Q Consensus       804 ~~~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~  883 (954)
                      |+|+++++|+|+|+||+|+|    ||+|||+|||+|+|||+||++|++|+|++|||+||||+||+|+|++++||+||||+
T Consensus         2 m~kki~~~Ikl~v~AGkA~P----GPaLG~~GVNi~~FcKefN~~Tk~~~G~~VPV~ItV~~DRsf~f~vktPptS~LLk   77 (196)
T PRK14539          2 AKKEVVKVAKLQFNAGQAKP----GPSLAGVGINMPEFTKQFNDATRDRGGEPVPVQITVYKDKSFDFKLFTAPASFKIK   77 (196)
T ss_pred             ccchhheEEEEEEECCccCC----CCcccccCCCHHHHHHHHHHHhhhcCCceEEEEEEEecCCeEEEEEeCCCHHHHHH
Confidence            67788999999999999999    55688999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCCC
Q 042478          884 KAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPV  946 (954)
Q Consensus       884 k~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~  946 (954)
                      |++|+++|+++|+++++|+||++||||||++|++|+++.+|+++||+|+||||||||+|++..
T Consensus        78 Kaagi~kGs~~p~k~~vG~Itl~qv~eIAk~K~~Dl~~~~Le~avK~VlGTArSMGI~Veg~d  140 (196)
T PRK14539         78 QAAKIKSGSANSKTTIVGTITLSQLEEIAKYKLPDLNTDDVEEAMHTIAGTAKNMGVLVEGYD  140 (196)
T ss_pred             HHhCCCCCCCCCCCeEEEEecHHHHHHHHHHHhhhhCCCcHHHHHHHHHhhheeCeEEEEccc
Confidence            999999999999999999999999999999999999999999999999999999999999854

>PTZ00321 ribosomal protein L11; Provisional

Probab=100.00  E-value=1.1e-45  Score=383.11  Aligned_cols=140  Identities=30%  Similarity=0.462  Sum_probs=133.7

Q ss_pred             cceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcC-C-CCceeeEEEEEeCCCeEEEEEeCCCHHHHHH
Q 042478          806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-K-AGYVIPVEITVYDDRSFTFILKTPPASVLLL  883 (954)
Q Consensus       806 ~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~-~-~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~  883 (954)
                      |+|++.|||+|+||+|+|+|||||+|||+|||||+|||+||++|++ + +|++|||+|+||+||+|+|+|++||+|||||
T Consensus        47 KkV~~~IKL~VpAGKAtPaPPVGPALGq~GVNImqFCKeFNerTK~~fk~GvpVPV~ITVy~DKSF~F~IktPPtS~LLK  126 (342)
T PTZ00321         47 KRVLHNWRFFIKAGKAATGPPVGQEFSKLGLKAMDFAKSFNDRTKPHFKDDVELIVRIQVYFDKSYLFTIEPPPTAWFIL  126 (342)
T ss_pred             CeeeEEEEEEEECCCcCCCCCCcccccccCCCHHHHHHHHHHHHHhhccCCCeEeEEEEEeCCCeEEEEECCCCHHHHHH
Confidence            4579999999999999999999999999999999999999999998 4 6999999999999999999999999999999


Q ss_pred             HHhCCCCCCCCC--CC-ceeEeecHHHHHHHHHHhCCCCCC---cCHHHHHHHHHHhhcccceEEcCC
Q 042478          884 KAAGVEKGSKDP--KQ-QKVGKITIEQLRAIATEKLPDLNC---TSIESAMRIIAGTAANMGIDIDPP  945 (954)
Q Consensus       884 k~~~~~~~~~~~--~~-~~~g~it~~~i~~Ia~~k~~~~~~---~~l~~~~k~i~gta~smG~~v~~~  945 (954)
                      |++|+++|+++|  ++ +++|+||++||||||++|++|+++   .+|+++||+|+|||+||||+|+++
T Consensus       127 KAAGI~KGS~~P~~~k~e~VG~ITlkQVyEIAkiK~~DLnal~~~~LesAvK~ViGTARSMGIkVeGK  194 (342)
T PTZ00321        127 RALRKKRRETGPVPLRGHYCALMTLEMAYEIAKMKPRSWGRPEYPLIETRVRRVVGQARRMGVCFIGV  194 (342)
T ss_pred             HHhCCCCCCCCCCCCCCceEEeccHHHHHHHHHHhhhccccccccCHHHHHHHHHhhHhcCeEEEecc
Confidence            999999999999  33 899999999999999999999875   799999999999999999999984

>KOG3257 consensus Mitochondrial/chloroplast ribosomal protein L11 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5e-46  Score=349.53  Aligned_cols=146  Identities=60%  Similarity=0.947  Sum_probs=141.6

Q ss_pred             eEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCC-CCceeeEEEEEeCCCeEEEEEeCCCHHHHHHHHhC
Q 042478          809 LGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADK-AGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAG  887 (954)
Q Consensus       809 ~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~-~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k~~~  887 (954)
                      ...+||.++||.|.|+||+||+|||+|||+++||||||++|++| .|+|+|++||+.+||+|+|++++||+||||+||+|
T Consensus        19 ~~~ikl~v~Ag~A~~~pp~gP~Lgqr~l~viafckefnarT~~~k~~vplp~kiTv~pDrsftf~iktPpts~lL~kAag   98 (168)
T KOG3257|consen   19 SASIKLIVKAGLAAPAPPLGPALGQRGLNVIAFCKEFNARTKKVKPGVPLPGKITVKPDRSFTFIIKTPPTSWLLKKAAG   98 (168)
T ss_pred             eeEEEEeeccccccCCCCCCchhhhcchhHHHhchhhhhhhccccCCCccceeEeecCCCeEEEEecCCChHHHHHHHhC
Confidence            56899999999999999999999999999999999999999995 59999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCceeEeecHHHHHHHHHHhCCCCC--CcCHHHHHHHHHHhhcccceEEcCCCchhhhccC
Q 042478          888 VEKGSKDPKQQKVGKITIEQLRAIATEKLPDLN--CTSIESAMRIIAGTAANMGIDIDPPVLETKKKEL  954 (954)
Q Consensus       888 ~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~--~~~l~~~~k~i~gta~smG~~v~~~~~~~~~~~~  954 (954)
                      ++||+++|+++++|.||++||||||++|.+|.+  +.+|+++||+|+|||+||||+|+++++|+++|+|
T Consensus        99 v~KGs~~p~~~~vG~lTlkhvyeIAkiK~~D~~~q~~~lesi~rsiigtA~smGIkVvp~ile~q~k~L  167 (168)
T KOG3257|consen   99 VEKGSKDPGQEKVGMLTLKHVYEIAKIKLPDPNLQCTTLESICRSIIGTARSMGIKVVPPILEPQKKDL  167 (168)
T ss_pred             cccCCCCCcceeeeeEEHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhCccccchhHhchhhhhh
Confidence            999999999999999999999999999999987  8999999999999999999999999999998864

>PTZ00262 subtilisin-like protease; Provisional

Probab=100.00  E-value=1.3e-44  Score=419.82  Aligned_cols=288  Identities=23%  Similarity=0.191  Sum_probs=206.5

Q ss_pred             cccccc--CCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCC---C
Q 042478          129 SKNLST--ESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIM---D  203 (954)
Q Consensus       129 ~~~~w~--~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~---~  203 (954)
                      ++.+|+  .+..|+||+|||||||||++||+|.+.-+.   .+....|....+.+.++.  ... +.+++|.++..   +
T Consensus       303 ~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~---n~~el~GrdgiDdD~nG~--vdd-~~G~nfVd~~~~P~D  376 (639)
T PTZ00262        303 LDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDV---NVKELHGRKGIDDDNNGN--VDD-EYGANFVNNDGGPMD  376 (639)
T ss_pred             chHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccc---ccccccCccccccccCCc--ccc-cccccccCCCCCCCC
Confidence            445665  456899999999999999999999865322   111111211000000000  011 23344554322   2


Q ss_pred             CCCchhhhcccccccc------ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCc
Q 042478          204 MINASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQ  276 (954)
Q Consensus       204 ~~G~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~  276 (954)
                      .+|||| ||+|++++.      +.||||+|+|+++|+++..| +..+++++||+||++.|++|||||||+..    + . 
T Consensus       377 ~~GHGT-HVAGIIAA~gnN~~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG~~~----~-s-  449 (639)
T PTZ00262        377 DNYHGT-HVSGIISAIGNNNIGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFSFDE----Y-S-  449 (639)
T ss_pred             CCCcch-HHHHHHhccccCCCceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEeccccCC----c-c-
Confidence            238999 999987653      68999999999999998776 78899999999999999999999999864    2 2 


Q ss_pred             ccHHHHHHHHHHHCCCEEEEeCCCCCCCCCc--------------ccc----CCCceEEEcccccCCCccceeecCCCeE
Q 042478          277 RDSIAIGSFHAIAKGITVVSSAGNDGPVAQT--------------IVN----TAPWIITVGATTIDRAFPTAITLGNHQV  338 (954)
Q Consensus       277 ~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t--------------~~~----~ap~vitVgAs~~d~~~~~~~~lg~~~~  338 (954)
                       ..+..|+.+|.++||+||+||||+|+....              ++.    ..|++|+|||++.+..            
T Consensus       450 -~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~~------------  516 (639)
T PTZ00262        450 -GIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDKN------------  516 (639)
T ss_pred             -HHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCCC------------
Confidence             567889999999999999999999864321              111    2356677766432110            


Q ss_pred             EeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEec
Q 042478          339 LWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQF  418 (954)
Q Consensus       339 ~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~  418 (954)
                                                                                                      
T Consensus       517 --------------------------------------------------------------------------------  516 (639)
T PTZ00262        517 --------------------------------------------------------------------------------  516 (639)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCce
Q 042478          419 HTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDI  498 (954)
Q Consensus       419 ~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I  498 (954)
                                                                      .....+.||++|..       ++||+|||++|
T Consensus       517 ------------------------------------------------~~~s~s~~Snyg~~-------~VDIaAPG~dI  541 (639)
T PTZ00262        517 ------------------------------------------------NQYSLSPNSFYSAK-------YCQLAAPGTNI  541 (639)
T ss_pred             ------------------------------------------------CcccccccccCCCC-------cceEEeCCCCe
Confidence                                                            00113456666632       34999999999


Q ss_pred             EecCCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCC
Q 042478          499 LSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDI  578 (954)
Q Consensus       499 ~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~  578 (954)
                      +++++.      +.|..++|||||||||||+||||++.+|+|++++|+++|++||.++...              .+...
T Consensus       542 ~St~p~------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~--------------~n~~~  601 (639)
T PTZ00262        542 YSTFPK------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL--------------KNKVK  601 (639)
T ss_pred             eeccCC------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC--------------CCccc
Confidence            999987      7899999999999999999999999999999999999999999865211              11112


Q ss_pred             CCCccCcccccCCCccccC
Q 042478          579 GGGHVNPNKAMNPGLVYDI  597 (954)
Q Consensus       579 GaG~vn~~~Al~pglvyd~  597 (954)
                      ++|+||+.+|++..+-+..
T Consensus       602 wgG~LDa~kAV~~Ai~~~~  620 (639)
T PTZ00262        602 WGGYLDIHHAVNLAIASKH  620 (639)
T ss_pred             cCcEEcHHHHHHHHHhccc
Confidence            2389999999986665533

>cd05562 Peptidases_S53_like Peptidase domain in the S53 family

Probab=100.00  E-value=8.1e-44  Score=388.79  Aligned_cols=271  Identities=27%  Similarity=0.286  Sum_probs=201.0

Q ss_pred             CCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhcccc
Q 042478          136 SNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGL  215 (954)
Q Consensus       136 ~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~  215 (954)
                      +++|+||+|||||||||..||++.+-.-+  ..+..+..            ++.       + ....+.+|||| |++|+
T Consensus         1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~--~l~~~~~~------------~~~-------~-~~~~d~~gHGT-~vAgi   57 (275)
T cd05562           1 GVDGTGIKIGVISDGFDGLGDAADDQASG--DLPGNVNV------------LGD-------L-DGGSGGGDEGR-AMLEI   57 (275)
T ss_pred             CCCCCceEEEEEeCCccccccccccccCC--CCCcceee------------ccc-------c-CCCCCCCchHH-HHHHH
Confidence            57899999999999999999865332111  11111110            000       0 11122237999 99998


Q ss_pred             ccccceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHC-CCEE
Q 042478          216 AAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAK-GITV  294 (954)
Q Consensus       216 a~G~~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~-Gi~V  294 (954)
                      +    .||||+|+|+.+|+.    ...+++++||+||++.|++|||||||...... +.+  ..+..++.++.++ |++|
T Consensus        58 i----~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~-~~~--~~~~~ai~~a~~~~Gvlv  126 (275)
T cd05562          58 I----HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLNEPF-FQD--GPIAQAVDEVVASPGVLY  126 (275)
T ss_pred             H----hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccCCCc-ccC--CHHHHHHHHHHHcCCcEE
Confidence            5    599999999999875    35789999999999999999999999864221 233  5788899999987 9999


Q ss_pred             EEeCCCCCCCCC-ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccC
Q 042478          295 VSSAGNDGPVAQ-TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCR  373 (954)
Q Consensus       295 V~AAGN~G~~~~-t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~  373 (954)
                      |+||||+|+... ..++..|++|+|||++.+.......                                        |.
T Consensus       127 VaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s----------------------------------------~~  166 (275)
T cd05562         127 FSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS----------------------------------------DP  166 (275)
T ss_pred             EEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc----------------------------------------cc
Confidence            999999998543 3457789999999976432100000                                        00


Q ss_pred             CCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCc
Q 042478          374 QGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPI  453 (954)
Q Consensus       374 ~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~  453 (954)
                                          +                                                           
T Consensus       167 --------------------~-----------------------------------------------------------  167 (275)
T cd05562         167 --------------------A-----------------------------------------------------------  167 (275)
T ss_pred             --------------------c-----------------------------------------------------------
Confidence                                0                                                           


Q ss_pred             cccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCC-ceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHH
Q 042478          454 AKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGV-DILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAAL  532 (954)
Q Consensus       454 ~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aAL  532 (954)
                                ........+.||++||+.  ++.+||||+|||. ++.+.+..      +.|..++|||||||||||++||
T Consensus       168 ----------~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~------~~~~~~sGTS~AaP~VaG~aAL  229 (275)
T cd05562         168 ----------PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG------DGPPNFFGTSAAAPHAAGVAAL  229 (275)
T ss_pred             ----------cCCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC------CceeecccchHHHHHHHHHHHH
Confidence                      000012245678899987  6789999999965 45666554      6899999999999999999999


Q ss_pred             HHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478          533 IKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN  590 (954)
Q Consensus       533 l~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~  590 (954)
                      |+|++|+|++++||++|++||+++..             ...+..||||+||+.+|++
T Consensus       230 l~~~~p~lt~~~v~~~L~~tA~~~~~-------------~g~d~~~G~G~vda~~Av~  274 (275)
T cd05562         230 VLSANPGLTPADIRDALRSTALDMGE-------------PGYDNASGSGLVDADRAVA  274 (275)
T ss_pred             HHHhCCCCCHHHHHHHHHHhCcccCC-------------CCCCCCcCcCcccHHHHhh
Confidence            99999999999999999999996532             2245689999999999986

Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi

>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins

Probab=100.00  E-value=1.1e-43  Score=384.78  Aligned_cols=239  Identities=31%  Similarity=0.412  Sum_probs=194.9

Q ss_pred             ccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhc
Q 042478          133 STESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTD  212 (954)
Q Consensus       133 w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v  212 (954)
                      |..+++|+||+|||||||||.+||+|.+....     ..|.              +.         +...+..|||| |+
T Consensus         1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~~~-----~~~~--------------~~---------~~~~d~~gHGT-~V   51 (255)
T cd07479           1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVKER-----TNWT--------------NE---------KTLDDGLGHGT-FV   51 (255)
T ss_pred             CCCCCCCCCCEEEEEeCCCCCCCcchhccccc-----cccC--------------CC---------CCCCCCCCcHH-HH
Confidence            88999999999999999999999999742111     0110              00         01112237999 99


Q ss_pred             ccccccc---ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHH
Q 042478          213 EGLAAGL---ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAI  288 (954)
Q Consensus       213 ~G~a~G~---~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~  288 (954)
                      +|++++.   ..||||+|+|+.+|++.+.+ +..++++++|+||+++++||||||||...    +.+  .++..++.++.
T Consensus        52 AGiIa~~~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~----~~~--~~~~~~~~~~~  125 (255)
T cd07479          52 AGVIASSREQCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD----FMD--KPFVDKVWELT  125 (255)
T ss_pred             HHHHHccCCCceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC----CCC--cHHHHHHHHHH
Confidence            9987765   68999999999999998776 66778999999999999999999999864    444  67777888889


Q ss_pred             HCCCEEEEeCCCCCCCCCc--cccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCC
Q 042478          289 AKGITVVSSAGNDGPVAQT--IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDP  366 (954)
Q Consensus       289 ~~Gi~VV~AAGN~G~~~~t--~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~  366 (954)
                      ++|++||+||||+|+...+  .+...+++|+|||.+.                                           
T Consensus       126 ~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~-------------------------------------------  162 (255)
T cd07479         126 ANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF-------------------------------------------  162 (255)
T ss_pred             HCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-------------------------------------------
Confidence            9999999999999986544  3456688999997431                                           


Q ss_pred             CCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHH
Q 042478          367 DSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYI  446 (954)
Q Consensus       367 ~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~  446 (954)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (255)
T cd07479         163 --------------------------------------------------------------------------------  162 (255)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhcCCCccccCCCceeecccCCCcccccCCCCCCCC----CCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCch
Q 042478          447 RRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSM----SPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMS  522 (954)
Q Consensus       447 ~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMA  522 (954)
                                           .+.++.|||+|++..    ..+++||||.|||.+|+++...      +.|..++|||||
T Consensus       163 ---------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~------~~~~~~sGTS~A  215 (255)
T cd07479         163 ---------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK------GGCRALSGTSVA  215 (255)
T ss_pred             ---------------------CCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC------CCeEEeccHHHH
Confidence                                 234678999996531    2577899999999999998765      679999999999


Q ss_pred             hHHHHHHHHHHHhhCC----CCCHHHHHHHHHhccccC
Q 042478          523 CPHVAGIAALIKSLHR----DWSPAAIRSALVTTASQT  556 (954)
Q Consensus       523 aP~VAG~aALl~q~~P----~~sp~~Iks~L~~TA~~~  556 (954)
                      ||||||++|||+|++|    .++|++||++|++||+++
T Consensus       216 aP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~  253 (255)
T cd07479         216 SPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL  253 (255)
T ss_pred             HHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence            9999999999999998    789999999999999965

SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem

>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins

Probab=100.00  E-value=1.7e-43  Score=411.01  Aligned_cols=392  Identities=23%  Similarity=0.202  Sum_probs=231.2

Q ss_pred             CCCCceEEEEEeCCCCCCCCCcCCC-CCCCCCCCCCcccccccCCCCCCCCCCccccceecccc--------C-------
Q 042478          137 NMGEGTIIGIIDTGVWPESESFSDK-GMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIK--------G-------  200 (954)
Q Consensus       137 ~~G~GVvVgVIDTGId~~Hp~f~d~-~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~--------~-------  200 (954)
                      .+|+||+|||||||||+.||+|++. +-.  ++...|++....+...      ....+..+|.+        .       
T Consensus         1 ltG~GV~VaVIDtGId~~hp~F~~~dg~t--Ri~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~p~~~~   72 (455)
T cd07478           1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTT--RILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAALASDNPYDIV   72 (455)
T ss_pred             CCCCceEEEEEECCCCCCCHHHccCCCCc--hhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHHHhcCCccccC
Confidence            4799999999999999999999853 333  7788898876644321      11111211111        0       


Q ss_pred             -CCCCCCchhhhcccccccc------ceeccCCCcEEEEEEecCCC-----------CChHHHHHHHHHHhcC-----Cc
Q 042478          201 -IMDMINASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDIG-----------CTDADVLKAFDKAIHD-----GV  257 (954)
Q Consensus       201 -~~~~~G~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g-----------~~~~dil~Aid~Ai~d-----gv  257 (954)
                       ..+.+|||| |++|+++|.      +.||||+|+|+++|++...+           +..+++++||+|+++.     .+
T Consensus        73 ~~~D~~GHGT-hvAGIiag~~~~~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p  151 (455)
T cd07478          73 PSRDENGHGT-HVAGIAAGNGDNNPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKP  151 (455)
T ss_pred             cCCCCCCchH-HHHHHHhcCCCCCCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCCC
Confidence             112238999 999998865      57999999999999998764           5688999999999874     46


Q ss_pred             cEEEecccCCCCCCCccCcccHHHHHHHHHHHC-CCEEEEeCCCCCCCCCccccC-----CC--ceEEEcccccCCCccc
Q 042478          258 DVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAK-GITVVSSAGNDGPVAQTIVNT-----AP--WIITVGATTIDRAFPT  329 (954)
Q Consensus       258 dVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~-Gi~VV~AAGN~G~~~~t~~~~-----ap--~vitVgAs~~d~~~~~  329 (954)
                      +|||||||...  + .+++.++++.++..+..+ |++||+||||+|.........     ..  --+.|+..  ++.+.-
T Consensus       152 ~VInlSlG~~~--g-~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~--~~~~~~  226 (455)
T cd07478         152 LVINISLGTNF--G-SHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEG--EKGFNL  226 (455)
T ss_pred             eEEEEccCcCC--C-CCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCC--CcceEE
Confidence            79999999875  2 333348899999888876 999999999999753333211     00  01222211  111100


Q ss_pred             eeecCCCeEEeeeeeeccCcCCceeeeeecccccc-----CCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHH
Q 042478          330 AITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAF-----DPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAIS  404 (954)
Q Consensus       330 ~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~  404 (954)
                      .+....-   ...++....+.+...+.+.......     .......|... ..+....|.-.+.-+          ..+
T Consensus       227 eiW~~~~---d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y-~~~~~~~g~~~i~i~----------~~~  292 (455)
T cd07478         227 EIWGDFP---DRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYY-YLPEPYTGDQLIFIR----------FKN  292 (455)
T ss_pred             EEecCCC---CEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEE-cCCCCCCCCeEEEEE----------ccC
Confidence            0000000   0001111111111111110000000     00000000000 001112222111111          111


Q ss_pred             HHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCcc----ccCCCceeecccC-CCcccccCCCCC
Q 042478          405 VTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIA----KLSSPETVIGDLV-SPRVASFSSRGP  479 (954)
Q Consensus       405 ~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~----~i~~~~~~~~~~~-~~~~a~FSS~GP  479 (954)
                       ...|.+-+.++...........++|.-.+..++..+    +.+....+.    ......++..... .+.++.||||||
T Consensus       293 -~~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f----~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~  367 (455)
T cd07478         293 -IKPGIWKIRLTGVSITDGRFDAWLPSRGLLSENTRF----LEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGP  367 (455)
T ss_pred             -CCccceEEEEEeccCCCceEEEEecCcCcCCCCCEe----ecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCc
Confidence             123555555554433222222333433222222111    122222222    2222233433333 456999999999


Q ss_pred             CCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhC------CCCCHHHHHHHHHhcc
Q 042478          480 NSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH------RDWSPAAIRSALVTTA  553 (954)
Q Consensus       480 ~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~------P~~sp~~Iks~L~~TA  553 (954)
                      +.  ++++||||+|||++|+++++.      +.|..++|||||||||||++|||+|.+      |.|++++||++|+.||
T Consensus       368 ~~--~~~~kpdi~APG~~i~s~~~~------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA  439 (455)
T cd07478         368 TR--DGRIKPDIAAPGVNILTASPG------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGA  439 (455)
T ss_pred             CC--CCCcCceEEecCCCEEEeecC------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhC
Confidence            98  799999999999999999986      789999999999999999999999865      6679999999999999


Q ss_pred             ccCCCCCccccccCCCCCCCCCCCCCCC
Q 042478          554 SQTGTDGMNIFEEGSTRKEADPFDIGGG  581 (954)
Q Consensus       554 ~~~~~~g~pi~~~~~~~~~~~~~~~GaG  581 (954)
                      +++.            ...+++.+||||
T Consensus       440 ~~~~------------~~~~pn~~~GyG  455 (455)
T cd07478         440 RRRP------------GDEYPNPEWGYG  455 (455)
T ss_pred             ccCC------------CCCCCCCCCCCC
Confidence            9753            235678899998

GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure

>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases

Probab=100.00  E-value=8.8e-43  Score=395.05  Aligned_cols=298  Identities=29%  Similarity=0.382  Sum_probs=226.7

Q ss_pred             cccCCC-CCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCccccc----ccCCCCCCCCCCccccceeccccCCCCC--
Q 042478          132 LSTESN-MGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGIC----QKGEKFNSSNCNRKLIGARWFIKGIMDM--  204 (954)
Q Consensus       132 ~w~~~~-~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~----~~~~~f~~~~cn~kiiga~~~~~~~~~~--  204 (954)
                      +|+++. +|+||+|||||||||++||+|.+....    +..|+..+    .......+.+++.+++.+++|.++....  
T Consensus         2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (346)
T cd07475           2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDS----KAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILD   77 (346)
T ss_pred             hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCc----ccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCC
Confidence            688887 999999999999999999999865432    12221000    0111223456788999999888664332  


Q ss_pred             ----CCchhhhcccccccc---------ceeccCCCcEEEEEEecC--C-CCChHHHHHHHHHHhcCCccEEEecccCCC
Q 042478          205 ----INASTNTDEGLAAGL---------ARGGAPLAHLAIYKACWD--I-GCTDADVLKAFDKAIHDGVDVLSVSIGNEI  268 (954)
Q Consensus       205 ----~G~GTa~v~G~a~G~---------~~GvAP~A~L~~yKv~~~--~-g~~~~dil~Aid~Ai~dgvdVINlSlG~~~  268 (954)
                          +|||| |++|+++|.         +.||||+|+|+.+|+++.  . .+...++++|+++|++.|++|||||||...
T Consensus        78 ~~~~~~HGT-~vagiiag~~~~~~~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~  156 (346)
T cd07475          78 EDDGSSHGM-HVAGIVAGNGDEEDNGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTA  156 (346)
T ss_pred             CCCCCCcHH-HHHHHHhcCCCccccCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCC
Confidence                27999 999987653         489999999999999973  3 377888999999999999999999999975


Q ss_pred             CCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCcc----------------ccCCCceEEEcccccCCCccceee
Q 042478          269 PLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTI----------------VNTAPWIITVGATTIDRAFPTAIT  332 (954)
Q Consensus       269 ~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~----------------~~~ap~vitVgAs~~d~~~~~~~~  332 (954)
                      ... ...  ..+..++.++.++|++||+||||+|......                +...+++|+||+....        
T Consensus       157 ~~~-~~~--~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~--------  225 (346)
T cd07475         157 GFV-DLD--DPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK--------  225 (346)
T ss_pred             CCC-CCC--CHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc--------
Confidence            222 223  6788889999999999999999998653221                1223455555543200        


Q ss_pred             cCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceE
Q 042478          333 LGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVG  412 (954)
Q Consensus       333 lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~g  412 (954)
                                                                                                      
T Consensus       226 --------------------------------------------------------------------------------  225 (346)
T cd07475         226 --------------------------------------------------------------------------------  225 (346)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEE
Q 042478          413 LIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIV  492 (954)
Q Consensus       413 vi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~  492 (954)
                                                                        ......+.++.||+|||+.  +.++||||+
T Consensus       226 --------------------------------------------------~~~~~~~~~~~~S~~G~~~--~~~~~pdi~  253 (346)
T cd07475         226 --------------------------------------------------VPNPNGGQMSGFSSWGPTP--DLDLKPDIT  253 (346)
T ss_pred             --------------------------------------------------cCCCCCCccCCCcCCCCCc--ccCcCCeEE
Confidence                                                              0012345678999999997  789999999


Q ss_pred             ecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhh----CCCCCHHH----HHHHHHhccccCCCCCcccc
Q 042478          493 APGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSL----HRDWSPAA----IRSALVTTASQTGTDGMNIF  564 (954)
Q Consensus       493 APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~----~P~~sp~~----Iks~L~~TA~~~~~~g~pi~  564 (954)
                      |||.+|+++...      +.|..++|||||||+|||++|||+|+    +|.|++.+    ||.+|++||.+....     
T Consensus       254 apG~~i~s~~~~------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~-----  322 (346)
T cd07475         254 APGGNIYSTVND------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS-----  322 (346)
T ss_pred             eCCCCeEEecCC------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCccccc-----
Confidence            999999999876      78999999999999999999999997    79999877    788999999842111     


Q ss_pred             ccCCCCCCCCCCCCCCCccCcccccC
Q 042478          565 EEGSTRKEADPFDIGGGHVNPNKAMN  590 (954)
Q Consensus       565 ~~~~~~~~~~~~~~GaG~vn~~~Al~  590 (954)
                        ......+.+..+|+|+||+.+|++
T Consensus       323 --~~~~~~~~~~~~G~G~vn~~~Av~  346 (346)
T cd07475         323 --EDTKTYYSPRRQGAGLIDVAKAIA  346 (346)
T ss_pred             --CCCCccCCccccCcchhcHHHhhC
Confidence              113456778899999999999985

Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr

>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14

Probab=100.00  E-value=6.2e-43  Score=387.46  Aligned_cols=268  Identities=31%  Similarity=0.311  Sum_probs=182.5

Q ss_pred             CCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccC----CCCCCCchhhhccc
Q 042478          139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKG----IMDMINASTNTDEG  214 (954)
Q Consensus       139 G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~----~~~~~G~GTa~v~G  214 (954)
                      |+||+|||||||||++||+|.++...      .|.-.++         +...+..+.++..+    ..+.+|||| |++|
T Consensus         1 G~gV~VaViDTGid~~HPdl~~~~~~------~~~~~~d---------~~~~~~~g~d~~~~~~~~~~D~~gHGT-hvAG   64 (311)
T cd07497           1 GEGVVIAIVDTGVDYSHPDLDIYGNF------SWKLKFD---------YKAYLLPGMDKWGGFYVIMYDFFSHGT-SCAS   64 (311)
T ss_pred             CCCeEEEEEeCCcCCCChhHhcccCC------CcccccC---------cCCCccCCcCCCCCccCCCCCccccch-hHHH
Confidence            89999999999999999999654211      1111110         01112222222211    122348999 9999


Q ss_pred             ccccc---------------ceeccCCCcEEEEEEecCCC-CChHHHHH-------HHHHH--hcCCccEEEecccCCCC
Q 042478          215 LAAGL---------------ARGGAPLAHLAIYKACWDIG-CTDADVLK-------AFDKA--IHDGVDVLSVSIGNEIP  269 (954)
Q Consensus       215 ~a~G~---------------~~GvAP~A~L~~yKv~~~~g-~~~~dil~-------Aid~A--i~dgvdVINlSlG~~~~  269 (954)
                      +++|.               +.||||+|+|+.+|+|+..+ +....+.+       +++|+  .++++||||||||....
T Consensus        65 iiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~  144 (311)
T cd07497          65 VAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNF  144 (311)
T ss_pred             HHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCC
Confidence            87764               47999999999999996543 33333333       34443  46899999999998641


Q ss_pred             CCC-ccCcccHHHHHHHHH-HHCCCEEEEeCCCCCCCCCc--cccCCCceEEEcccccCCCccceeecCCCeEEeeeeee
Q 042478          270 LFS-YIDQRDSIAIGSFHA-IAKGITVVSSAGNDGPVAQT--IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSID  345 (954)
Q Consensus       270 ~~~-~~~~~d~~~~a~~~A-~~~Gi~VV~AAGN~G~~~~t--~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~  345 (954)
                      ... +..+.+..+..++.+ .++||++|+||||+|+...+  .+..++++|+|||++.....+..               
T Consensus       145 ~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~---------------  209 (311)
T cd07497         145 AYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY---------------  209 (311)
T ss_pred             CccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh---------------
Confidence            100 111113344444433 38999999999999987554  34578999999997532110000               


Q ss_pred             ccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCC
Q 042478          346 IGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDS  425 (954)
Q Consensus       346 ~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~  425 (954)
                               ..                                     +                               
T Consensus       210 ---------~~-------------------------------------~-------------------------------  212 (311)
T cd07497         210 ---------LF-------------------------------------G-------------------------------  212 (311)
T ss_pred             ---------hh-------------------------------------c-------------------------------
Confidence                     00                                     0                               


Q ss_pred             CcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCC
Q 042478          426 CNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPI  505 (954)
Q Consensus       426 ~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~  505 (954)
                                                           ......+.++.||||||+.  ++++||||+|||++|+++.+..
T Consensus       213 -------------------------------------~~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~  253 (311)
T cd07497         213 -------------------------------------YLPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVL  253 (311)
T ss_pred             -------------------------------------cccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccC
Confidence                                                 0012345689999999998  7999999999999999987653


Q ss_pred             CC----CCCCceEeecCCCchhHHHHHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 042478          506 GS----KDIQGYALLSGTSMSCPHVAGIAALIKSLHR------DWSPAAIRSALVTTA  553 (954)
Q Consensus       506 ~~----~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P------~~sp~~Iks~L~~TA  553 (954)
                      ..    .....|..++|||||||||||++|||+|++|      .++|++||.+|++||
T Consensus       254 ~~~~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA  311 (311)
T cd07497         254 DSGGALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA  311 (311)
T ss_pred             CCCcccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence            21    1124799999999999999999999999876      689999999999997

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases

Probab=100.00  E-value=6.6e-42  Score=372.65  Aligned_cols=243  Identities=26%  Similarity=0.265  Sum_probs=198.2

Q ss_pred             cccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhh
Q 042478          132 LSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNT  211 (954)
Q Consensus       132 ~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~  211 (954)
                      +|..+.+|+||+|||||+|||++||+|.+..+.  +....|.                       ......+..|||| |
T Consensus         2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~--~~~~~~~-----------------------~~~~~~~~~gHGT-~   55 (267)
T cd07476           2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLT--PLFTYAA-----------------------AACQDGGASAHGT-H   55 (267)
T ss_pred             ceeccCCCCCeEEEEeCCCcCCCChhhCCCccc--cccCccc-----------------------cCCCCCCCCCcHH-H
Confidence            799999999999999999999999999865433  1111110                       0011112237999 9


Q ss_pred             cccccccc----ceeccCCCcEEEEEEecCCC--CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHH
Q 042478          212 DEGLAAGL----ARGGAPLAHLAIYKACWDIG--CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSF  285 (954)
Q Consensus       212 v~G~a~G~----~~GvAP~A~L~~yKv~~~~g--~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~  285 (954)
                      ++|+..|.    +.||||+|+|+.+|++...+  ++..++++||+||+++|+||||||||...... ...  ..+..++.
T Consensus        56 VAgii~g~~~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~-~~~--~~l~~a~~  132 (267)
T cd07476          56 VASLIFGQPCSSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTG-EAD--PILANAVA  132 (267)
T ss_pred             HHHHHhcCCCCCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCC-CCC--HHHHHHHH
Confidence            99987754    46999999999999997653  45788999999999999999999999764222 333  67888999


Q ss_pred             HHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccC
Q 042478          286 HAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFD  365 (954)
Q Consensus       286 ~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~  365 (954)
                      +|.++|++||+||||+|.....+++..|++|+|||++.+                                         
T Consensus       133 ~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-----------------------------------------  171 (267)
T cd07476         133 MCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD-----------------------------------------  171 (267)
T ss_pred             HHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC-----------------------------------------
Confidence            999999999999999998877778888999999984311                                         


Q ss_pred             CCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHH
Q 042478          366 PDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSY  445 (954)
Q Consensus       366 ~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~  445 (954)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (267)
T cd07476         172 --------------------------------------------------------------------------------  171 (267)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHH
Q 042478          446 IRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPH  525 (954)
Q Consensus       446 ~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~  525 (954)
                                             +.++.||+||+..     .||||+|||.+|+++++.      +.|..++||||||||
T Consensus       172 -----------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~------~~~~~~sGTS~AaP~  217 (267)
T cd07476         172 -----------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALG------GEVVRRSGTSFAAAI  217 (267)
T ss_pred             -----------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCC------CCeEEeccHHHHHHH
Confidence                                   2246789999864     378999999999999887      789999999999999


Q ss_pred             HHHHHHHHHhhCCC----CCHHHHHHHHHhccccCCC
Q 042478          526 VAGIAALIKSLHRD----WSPAAIRSALVTTASQTGT  558 (954)
Q Consensus       526 VAG~aALl~q~~P~----~sp~~Iks~L~~TA~~~~~  558 (954)
                      |||++|||+|++|.    ++|++||++|++||++++.
T Consensus       218 vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~  254 (267)
T cd07476         218 VAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP  254 (267)
T ss_pred             HHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence            99999999999887    8999999999999998754

Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).

>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5

Probab=100.00  E-value=8.6e-42  Score=381.38  Aligned_cols=290  Identities=31%  Similarity=0.403  Sum_probs=220.1

Q ss_pred             ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478          129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS  208 (954)
Q Consensus       129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G  208 (954)
                      ++.+|+.+++|+||+|||||+|||++||+|.+.......+...|+   ..++.+..  .+....     ..+..+.+|||
T Consensus         2 v~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~~~~~~~~~d---~~~~~~~~--~~~~~~-----~~~~~d~~gHG   71 (312)
T cd07489           2 VDKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGPGCKVAGGYD---FVGDDYDG--TNPPVP-----DDDPMDCQGHG   71 (312)
T ss_pred             hhhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCCCceeccccc---cCCccccc--ccCCCC-----CCCCCCCCCcH
Confidence            567999999999999999999999999999864222001111111   01111000  000000     00111123899


Q ss_pred             hhhcccccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHH
Q 042478          209 TNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAI  282 (954)
Q Consensus       209 Ta~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~  282 (954)
                      | +++|++++.     +.||||+|+|+.||++...+ ...+.++++|++|+++|++|||+|||...  . +..  +.+..
T Consensus        72 T-~vAgiia~~~~~~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~--~-~~~--~~~~~  145 (312)
T cd07489          72 T-HVAGIIAANPNAYGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS--G-WSE--DPWAV  145 (312)
T ss_pred             H-HHHHHHhcCCCCCceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC--C-CCC--CHHHH
Confidence            9 999988775     57999999999999998655 67778999999999999999999999874  3 555  77888


Q ss_pred             HHHHHHHCCCEEEEeCCCCCCCCC---ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeec
Q 042478          283 GSFHAIAKGITVVSSAGNDGPVAQ---TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYS  359 (954)
Q Consensus       283 a~~~A~~~Gi~VV~AAGN~G~~~~---t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~  359 (954)
                      ++.++.++|+++|+||||+|....   ..+...|++|+||+.+                                     
T Consensus       146 ~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~-------------------------------------  188 (312)
T cd07489         146 VASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD-------------------------------------  188 (312)
T ss_pred             HHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-------------------------------------
Confidence            889999999999999999986532   3345667888888621                                     


Q ss_pred             cccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhH
Q 042478          360 ERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVG  439 (954)
Q Consensus       360 ~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g  439 (954)
                                                                                                      
T Consensus       189 --------------------------------------------------------------------------------  188 (312)
T cd07489         189 --------------------------------------------------------------------------------  188 (312)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCC
Q 042478          440 TQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGT  519 (954)
Q Consensus       440 ~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGT  519 (954)
                                                      +.||+|||+.  +...||||+|||++++++++..    .+.|..++||
T Consensus       189 --------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~----~~~~~~~~GT  230 (312)
T cd07489         189 --------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLA----GGGYAVLSGT  230 (312)
T ss_pred             --------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCC----CCceEeeccH
Confidence                                            4689999987  6889999999999999998762    1359999999


Q ss_pred             CchhHHHHHHHHHHHhhC-CCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccCCCc
Q 042478          520 SMSCPHVAGIAALIKSLH-RDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGL  593 (954)
Q Consensus       520 SMAaP~VAG~aALl~q~~-P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~pgl  593 (954)
                      |||||+|||++|||+|++ |.+++.+|+++|++||..+...+..-.    ....++...+|+|+||+.+|++..-
T Consensus       231 S~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~----~~~~~~~~~~G~G~vn~~~a~~~~~  301 (312)
T cd07489         231 SMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSA----LPDLAPVAQQGAGLVNAYKALYATT  301 (312)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCcc----ccCCCCHhhcCcceeeHHHHhcCCc
Confidence            999999999999999999 999999999999999997653321000    1123667899999999999999543

gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>PTZ00105 60S ribosomal protein L12; Provisional

Probab=100.00  E-value=2.7e-42  Score=331.47  Aligned_cols=128  Identities=23%  Similarity=0.356  Sum_probs=123.6

Q ss_pred             CCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHHHHhCCCCCCCCCCCc--eeEe
Q 042478          825 PPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQ--KVGK  902 (954)
Q Consensus       825 p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k~~~~~~~~~~~~~~--~~g~  902 (954)
                      ++|||+|||+|||+|+|||+||++|++|+|++|||+|||| ||+|+|++ .||+|+||+|++|+++++++++++  ++|+
T Consensus         1 ~~lGPaLG~~GvNi~~fck~fN~~T~~~~G~~vpV~Itv~-drsf~~~v-~Pp~s~ll~k~ag~~~~~~~~~~~~~~vG~   78 (140)
T PTZ00105          1 SSLAPKVGPLGLSPKKVGDDIAKATKDWKGLKVTVKLTVQ-NRQATVEV-VPTASSLLIKALKEPPRDRKKVKNIKHSGN   78 (140)
T ss_pred             CCCccccccCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEE-CCEEEEEE-CCCHHHHHHHHhCCCCCCCCCCCcceeeeE
Confidence            5899999999999999999999999999999999999999 99999999 599999999999999899888876  9999


Q ss_pred             ecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCCCchhhhccC
Q 042478          903 ITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKKEL  954 (954)
Q Consensus       903 it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~~~~~~~~~  954 (954)
                      ||++||+|||++|++|+++++|+++||+|+||||||||+|+++.|++++++|
T Consensus        79 it~~qv~eIAk~K~~dl~~~~l~~a~k~V~GTarSmGi~V~gk~pkev~~~i  130 (140)
T PTZ00105         79 LTFDQVIKIARTMRPKSMAKTFKGTVKEVLGTCVSIGCTVDGESPRDIQEKI  130 (140)
T ss_pred             eeHHHHHHHHHHHHhhhCCCcHHHHHHHHHhhheeeeEEEECCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998865

>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins

Probab=100.00  E-value=1.3e-40  Score=368.95  Aligned_cols=285  Identities=37%  Similarity=0.481  Sum_probs=206.2

Q ss_pred             CCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhccccccc
Q 042478          139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAG  218 (954)
Q Consensus       139 G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G  218 (954)
                      |+||+|||||+|||++||+|.+..+....+...|+-........... -+... .   -.....+.+|||| +++|+++|
T Consensus         1 G~gV~VaViDsGi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~---~~~~~~~~~~HGT-~vAgiiag   74 (295)
T cd07474           1 GKGVKVAVIDTGIDYTHPDLGGPGFPNDKVKGGYDFVDDDYDPMDTR-PYPSP-L---GDASAGDATGHGT-HVAGIIAG   74 (295)
T ss_pred             CCCCEEEEEECCcCCCCcccccCCCCCCceeeeeECccCCCCccccc-ccccc-c---ccCCCCCCCCcHH-HHHHHHhc
Confidence            89999999999999999999754221001111111000000000000 00000 0   0000111237999 99998776


Q ss_pred             c------ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCC
Q 042478          219 L------ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKG  291 (954)
Q Consensus       219 ~------~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~G  291 (954)
                      .      +.|+||+|+|+.+|++...+ +...++++||+|+++++++|||||||...  . ...  +.+..++.++.++|
T Consensus        75 ~~~n~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~--~-~~~--~~~~~~~~~~~~~g  149 (295)
T cd07474          75 NGVNVGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV--N-GPD--DPDAIAINNAVKAG  149 (295)
T ss_pred             CCCccCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC--C-CCC--CHHHHHHHHHHhcC
Confidence            5      37999999999999997544 78899999999999999999999999874  2 223  77888999999999


Q ss_pred             CEEEEeCCCCCCCCCcc--ccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCC
Q 042478          292 ITVVSSAGNDGPVAQTI--VNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSA  369 (954)
Q Consensus       292 i~VV~AAGN~G~~~~t~--~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~  369 (954)
                      +++|+||||+|......  +...+++|+|||+....                                            
T Consensus       150 il~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~--------------------------------------------  185 (295)
T cd07474         150 VVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD--------------------------------------------  185 (295)
T ss_pred             CEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC--------------------------------------------
Confidence            99999999999765544  45678999999854110                                            


Q ss_pred             CccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhc
Q 042478          370 NDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRA  449 (954)
Q Consensus       370 ~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~  449 (954)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (295)
T cd07474         186 --------------------------------------------------------------------------------  185 (295)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccccCCCceeecccCCCcccccCCC-CCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHH
Q 042478          450 RSPIAKLSSPETVIGDLVSPRVASFSSR-GPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAG  528 (954)
Q Consensus       450 ~~~~~~i~~~~~~~~~~~~~~~a~FSS~-GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG  528 (954)
                                     .........|+++ |+..  ...+||||+|||++|++++...    ...|..++|||||||+|||
T Consensus       186 ---------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~----~~~~~~~~GTS~AaP~vaG  244 (295)
T cd07474         186 ---------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGS----GTGYARMSGTSMAAPHVAG  244 (295)
T ss_pred             ---------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCC----CCceEEeccHHHHHHHHHH
Confidence                           0011223344554 4444  7889999999999999998763    2579999999999999999


Q ss_pred             HHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccc
Q 042478          529 IAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKA  588 (954)
Q Consensus       529 ~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~A  588 (954)
                      ++|||+|++|+|+|++||++|++||++.+..+.         ...++..+|+|+||+.+|
T Consensus       245 ~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~---------~~~~~~~~G~G~l~~~~A  295 (295)
T cd07474         245 AAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG---------VVYPVSRQGAGRVDALRA  295 (295)
T ss_pred             HHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC---------CcCChhccCcceeccccC
Confidence            999999999999999999999999997654331         223567899999999886

The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4

Probab=100.00  E-value=9.6e-41  Score=358.35  Aligned_cols=231  Identities=29%  Similarity=0.373  Sum_probs=187.6

Q ss_pred             eEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhccccccccc-
Q 042478          142 TIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGLA-  220 (954)
Q Consensus       142 VvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G~~-  220 (954)
                      |+|||||||||++||+|.+....      .|        .+.              ..+..+.+|||| |++|++++.. 
T Consensus         1 V~VavIDsGvd~~hp~l~~~~~~------~~--------~~~--------------~~~~~~~~~HGT-~vAgiia~~~~   51 (239)
T cd05561           1 VRVGMIDTGIDTAHPALSAVVIA------RL--------FFA--------------GPGAPAPSAHGT-AVASLLAGAGA   51 (239)
T ss_pred             CEEEEEeCCCCCCCcccccCccc------cc--------cCC--------------CCCCCCCCCCHH-HHHHHHhCCCC
Confidence            68999999999999999754322      00        000              001112237999 9999887764 


Q ss_pred             --eeccCCCcEEEEEEecCCC----CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEE
Q 042478          221 --RGGAPLAHLAIYKACWDIG----CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITV  294 (954)
Q Consensus       221 --~GvAP~A~L~~yKv~~~~g----~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~V  294 (954)
                        .|+||+|+|+.+|++...+    ++..++++||+||++.|++|||||||+..  .      ..+..++.+|.++|++|
T Consensus        52 ~~~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~--~------~~l~~ai~~a~~~gilv  123 (239)
T cd05561          52 QRPGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP--N------ALLAAAVAAAAARGMVL  123 (239)
T ss_pred             CCcccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--C------HHHHHHHHHHHHCCCEE
Confidence              4999999999999998642    67788999999999999999999999753  2      56788889999999999


Q ss_pred             EEeCCCCCCCC-CccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccC
Q 042478          295 VSSAGNDGPVA-QTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCR  373 (954)
Q Consensus       295 V~AAGN~G~~~-~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~  373 (954)
                      |+||||+|+.. ..+++..|++|+|+|++.                                                  
T Consensus       124 v~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~--------------------------------------------------  153 (239)
T cd05561         124 VAAAGNDGPAAPPLYPAAYPGVIAVTAVDA--------------------------------------------------  153 (239)
T ss_pred             EEecCCCCCCCCccCcccCCCceEEEeecC--------------------------------------------------
Confidence            99999999753 456677789999987431                                                  


Q ss_pred             CCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCc
Q 042478          374 QGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPI  453 (954)
Q Consensus       374 ~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~  453 (954)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (239)
T cd05561         154 --------------------------------------------------------------------------------  153 (239)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHHH
Q 042478          454 AKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALI  533 (954)
Q Consensus       454 ~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl  533 (954)
                                    .+.++.||++|+..        ||.|||++|+++.+.      +.|..++|||||||||||++|||
T Consensus       154 --------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~------~~~~~~sGTS~AaP~vaG~aAll  205 (239)
T cd05561         154 --------------RGRLYREANRGAHV--------DFAAPGVDVWVAAPG------GGYRYVSGTSFAAPFVTAALALL  205 (239)
T ss_pred             --------------CCCccccCCCCCcc--------eEEccccceecccCC------CCEEEeCCHHHHHHHHHHHHHHH
Confidence                          13356799999976        999999999998876      78999999999999999999999


Q ss_pred             HhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCC
Q 042478          534 KSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGG  581 (954)
Q Consensus       534 ~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG  581 (954)
                      +|++| +++++||++|++||++++..             ..+..||||
T Consensus       206 ~~~~p-~~~~~i~~~L~~ta~~~g~~-------------~~d~~~G~G  239 (239)
T cd05561         206 LQASP-LAPDDARARLAATAKDLGPP-------------GRDPVFGYG  239 (239)
T ss_pred             HhcCC-CCHHHHHHHHHHHhhccCCC-------------CcCCCcCCC
Confidence            99999 99999999999999976433             335678987

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins

Probab=100.00  E-value=4.4e-40  Score=363.44  Aligned_cols=253  Identities=26%  Similarity=0.327  Sum_probs=185.2

Q ss_pred             CceEEEEEeCCCCCCCCCcCCCCCC-CCCCCCCcccccccC---------CCCCCCCCCccccceeccccCC--------
Q 042478          140 EGTIIGIIDTGVWPESESFSDKGMG-QAPVPPHWKGICQKG---------EKFNSSNCNRKLIGARWFIKGI--------  201 (954)
Q Consensus       140 ~GVvVgVIDTGId~~Hp~f~d~~~~-~~~~p~~~~g~~~~~---------~~f~~~~cn~kiiga~~~~~~~--------  201 (954)
                      |+|+|||||||||++||+|++..|. ..++|  .+|....+         .+|.+..+.+++++...+....        
T Consensus         1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~--~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~   78 (291)
T cd07483           1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIP--GNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDV   78 (291)
T ss_pred             CceEEEEEeCCCCCCChhhhhhhhcCCcccC--CCCccCCCCCccccccCeeccCCcccccccccCcccccccccccccc
Confidence            6899999999999999999876543 00111  12222222         2232222333333332222111        


Q ss_pred             C---CCCCchhhhcccccccc------ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhcCCccEEEecccCCCCCCC
Q 042478          202 M---DMINASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFS  272 (954)
Q Consensus       202 ~---~~~G~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~  272 (954)
                      .   +..|||| |++|++++.      +.||||+|+|+.+|++........++++||+||++.|++|||||||...  . 
T Consensus        79 ~~~~~~~gHGT-~VAGiIaa~~~n~~g~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~~--~-  154 (291)
T cd07483          79 NGPISDADHGT-HVAGIIAAVRDNGIGIDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGKSF--S-  154 (291)
T ss_pred             CCCCCCCCcHH-HHHHHHhCcCCCCCceEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCCCCC--C-
Confidence            0   1227999 999987653      6799999999999998654467889999999999999999999999763  1 


Q ss_pred             ccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCcc-----------ccCCCceEEEcccccCCCccceeecCCCeEEee
Q 042478          273 YIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTI-----------VNTAPWIITVGATTIDRAFPTAITLGNHQVLWG  341 (954)
Q Consensus       273 ~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~-----------~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g  341 (954)
                      ...  ..+..++..|.++|+++|+||||+|.+....           +...+.+|+|||++...                
T Consensus       155 ~~~--~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~----------------  216 (291)
T cd07483         155 PNK--EWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY----------------  216 (291)
T ss_pred             Ccc--HHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC----------------
Confidence            222  4677788889999999999999999642211           11234566666532110                


Q ss_pred             eeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCC
Q 042478          342 QSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTD  421 (954)
Q Consensus       342 ~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~  421 (954)
                                                                                                      
T Consensus       217 --------------------------------------------------------------------------------  216 (291)
T cd07483         217 --------------------------------------------------------------------------------  216 (291)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEec
Q 042478          422 GLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSA  501 (954)
Q Consensus       422 ~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa  501 (954)
                                                                   ....++.||++|+.       +|||.|||++|+++
T Consensus       217 ---------------------------------------------~~~~~~~~Sn~G~~-------~vdi~APG~~i~s~  244 (291)
T cd07483         217 ---------------------------------------------ENNLVANFSNYGKK-------NVDVFAPGERIYST  244 (291)
T ss_pred             ---------------------------------------------CcccccccCCCCCC-------ceEEEeCCCCeEec
Confidence                                                         11236789999984       35999999999999


Q ss_pred             CCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478          502 YPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTAS  554 (954)
Q Consensus       502 ~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~  554 (954)
                      .+.      +.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus       245 ~~~------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~  291 (291)
T cd07483         245 TPD------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV  291 (291)
T ss_pred             cCc------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence            876      78999999999999999999999999999999999999999984

Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat

>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9

Probab=100.00  E-value=9.9e-40  Score=355.61  Aligned_cols=238  Identities=29%  Similarity=0.361  Sum_probs=190.1

Q ss_pred             ceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCC----CCCchhhhccccc
Q 042478          141 GTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMD----MINASTNTDEGLA  216 (954)
Q Consensus       141 GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~----~~G~GTa~v~G~a  216 (954)
                      ||+|||||||||++||+|....+.                      ++.++.+.++|.++...    .+|||| |++|+.
T Consensus         1 Gv~VaviDsGi~~~h~~~~~~~~~----------------------~~~~i~~~~~~~~~~~~~~~~~~~HGT-~vagii   57 (261)
T cd07493           1 GITIAVIDAGFPKVHEAFAFKHLF----------------------KNLRILGEYDFVDNSNNTNYTDDDHGT-AVLSTM   57 (261)
T ss_pred             CCEEEEEccCCCccCcchhhhccc----------------------cCCceeeeecCccCCCCCCCCCCCchh-hhheee
Confidence            799999999999999999532211                      23455555656544322    237999 999987


Q ss_pred             ccc----ceeccCCCcEEEEEEecCCC---CChHHHHHHHHHHhcCCccEEEecccCCCCCCCc------c---CcccHH
Q 042478          217 AGL----ARGGAPLAHLAIYKACWDIG---CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSY------I---DQRDSI  280 (954)
Q Consensus       217 ~G~----~~GvAP~A~L~~yKv~~~~g---~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~------~---~~~d~~  280 (954)
                      +|.    ..||||+|+|+.+|+.....   ....+++.|++||.+.|++|||||||...... .      .   .....+
T Consensus        58 a~~~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~-~~~~~~~~~~~~~~~~l  136 (261)
T cd07493          58 AGYTPGVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDN-PTYSYTYADMDGKTSFI  136 (261)
T ss_pred             eeCCCCCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCC-cccccccccccccchHH
Confidence            664    68999999999999976432   34567899999999999999999999875111 1      0   001357


Q ss_pred             HHHHHHHHHCCCEEEEeCCCCCCC---CCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeee
Q 042478          281 AIGSFHAIAKGITVVSSAGNDGPV---AQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLT  357 (954)
Q Consensus       281 ~~a~~~A~~~Gi~VV~AAGN~G~~---~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~  357 (954)
                      ..++..|.++|+++|+||||+|..   ....+...|++|+|||.+.                                  
T Consensus       137 ~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~----------------------------------  182 (261)
T cd07493         137 SRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA----------------------------------  182 (261)
T ss_pred             HHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc----------------------------------
Confidence            778889999999999999999977   3455677899999997431                                  


Q ss_pred             eccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehh
Q 042478          358 YSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYE  437 (954)
Q Consensus       358 ~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~  437 (954)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (261)
T cd07493         183 --------------------------------------------------------------------------------  182 (261)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeec
Q 042478          438 VGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLS  517 (954)
Q Consensus       438 ~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~S  517 (954)
                                                    .+.++.||++||+.  ++++||||+|||.+|++....      +.|..++
T Consensus       183 ------------------------------~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~------~~~~~~s  224 (261)
T cd07493         183 ------------------------------NGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD------GNITYAN  224 (261)
T ss_pred             ------------------------------CCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC------CcEEeeC
Confidence                                          12457899999987  789999999999999986654      6899999


Q ss_pred             CCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478          518 GTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTAS  554 (954)
Q Consensus       518 GTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~  554 (954)
                      |||||||||||++|||+|++|+|++.|||++|++||+
T Consensus       225 GTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~  261 (261)
T cd07493         225 GTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS  261 (261)
T ss_pred             cHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999985

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins

Probab=100.00  E-value=3.8e-39  Score=351.64  Aligned_cols=242  Identities=34%  Similarity=0.357  Sum_probs=188.9

Q ss_pred             CCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhccccccc
Q 042478          139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAG  218 (954)
Q Consensus       139 G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G  218 (954)
                      |+||+|||||||||++||+|.+. +.  +   .+.+......++.....+         .....+.+|||| |++|++.|
T Consensus         1 G~GV~VaViDsGi~~~hp~l~~~-~~--~---~~~~~~~~~~~~~d~~~~---------~~~~~d~~~HGT-~vagii~g   64 (264)
T cd07481           1 GTGIVVANIDTGVDWTHPALKNK-YR--G---WGGGSADHDYNWFDPVGN---------TPLPYDDNGHGT-HTMGTMVG   64 (264)
T ss_pred             CCCcEEEEEeCCCCCCChhHhhc-cc--c---cCCCCcccccccccCCCC---------CCCCCCCCCchh-hhhhheee
Confidence            89999999999999999999864 21  0   000100000000000000         000111237999 99998765


Q ss_pred             c-----ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhc------------CCccEEEecccCCCCCCCccCcccHHH
Q 042478          219 L-----ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIH------------DGVDVLSVSIGNEIPLFSYIDQRDSIA  281 (954)
Q Consensus       219 ~-----~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~------------dgvdVINlSlG~~~~~~~~~~~~d~~~  281 (954)
                      .     ..||||+|+|+.+|++...++...+++++++|+++            .|+||||||||...    ...  ..+.
T Consensus        65 ~~~~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~----~~~--~~~~  138 (264)
T cd07481          65 NDGDGQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPS----GDN--EWLQ  138 (264)
T ss_pred             cCCCCCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCC----CCc--hHHH
Confidence            3     47899999999999998877888999999999975            78999999999875    222  5566


Q ss_pred             HHHHHHHHCCCEEEEeCCCCCCCCCc---cccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeee
Q 042478          282 IGSFHAIAKGITVVSSAGNDGPVAQT---IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTY  358 (954)
Q Consensus       282 ~a~~~A~~~Gi~VV~AAGN~G~~~~t---~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~  358 (954)
                      .++..+.++|++||+||||+|.+...   .++..|++|+|||.+.                                   
T Consensus       139 ~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~-----------------------------------  183 (264)
T cd07481         139 PAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR-----------------------------------  183 (264)
T ss_pred             HHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC-----------------------------------
Confidence            77788889999999999999865433   4567789999997431                                   


Q ss_pred             ccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhh
Q 042478          359 SERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEV  438 (954)
Q Consensus       359 ~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~  438 (954)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (264)
T cd07481         184 --------------------------------------------------------------------------------  183 (264)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecC
Q 042478          439 GTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSG  518 (954)
Q Consensus       439 g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SG  518 (954)
                                                   .+.++.||++||..  .+.+||||+|||.+|+++++.      +.|..++|
T Consensus       184 -----------------------------~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~------~~~~~~~G  226 (264)
T cd07481         184 -----------------------------NDVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG------GGYGSSSG  226 (264)
T ss_pred             -----------------------------CCCCccccCCCCCC--CCCcCceEEECCCCeEEecCC------CceEeeCc
Confidence                                         23467899999987  588999999999999999987      78999999


Q ss_pred             CCchhHHHHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 042478          519 TSMSCPHVAGIAALIKSLHRD--WSPAAIRSALVTTAS  554 (954)
Q Consensus       519 TSMAaP~VAG~aALl~q~~P~--~sp~~Iks~L~~TA~  554 (954)
                      ||||||+|||++|||+|++|+  ++++|||++|++||+
T Consensus       227 TS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~  264 (264)
T cd07481         227 TSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR  264 (264)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence            999999999999999999999  999999999999985

Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.

>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II

Probab=100.00  E-value=9.3e-39  Score=360.84  Aligned_cols=209  Identities=31%  Similarity=0.355  Sum_probs=160.7

Q ss_pred             Cchhhhcccccccc------ceeccCCCcEEEEEEecCCC---CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCc
Q 042478          206 NASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDIG---CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQ  276 (954)
Q Consensus       206 G~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g---~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~  276 (954)
                      |||| ||+|+++|.      ..|+||+|+|+.+|+++...   +...++++||++|++.|+||||||||...  . +.+.
T Consensus       186 gHGT-hVAGIIAg~~~~~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG~~~--~-~~~~  261 (412)
T cd04857         186 AHGT-HVAGIAAAHFPEEPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYGEAT--H-WPNS  261 (412)
T ss_pred             CCHH-HHHHHHhCCCCCCCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCCcCC--C-Cccc
Confidence            6999 999988765      58999999999999986542   23467999999999999999999999875  2 2210


Q ss_pred             ccHHHHHHHH-HHHCCCEEEEeCCCCCCCCCcccc---CCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCc
Q 042478          277 RDSIAIGSFH-AIAKGITVVSSAGNDGPVAQTIVN---TAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHG  352 (954)
Q Consensus       277 ~d~~~~a~~~-A~~~Gi~VV~AAGN~G~~~~t~~~---~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~  352 (954)
                       ..+..++.+ +.++||++|+||||+|+...++..   ..+.+|+|||.........                       
T Consensus       262 -~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~-----------------------  317 (412)
T cd04857         262 -GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAA-----------------------  317 (412)
T ss_pred             -hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccc-----------------------
Confidence             234444544 447999999999999988776543   4689999998542210000                       


Q ss_pred             eeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceE
Q 042478          353 FTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCI  432 (954)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~  432 (954)
                      .|-+                                                                            
T Consensus       318 ~y~~----------------------------------------------------------------------------  321 (412)
T cd04857         318 EYSL----------------------------------------------------------------------------  321 (412)
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             EeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCc
Q 042478          433 KVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQG  512 (954)
Q Consensus       433 ~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~  512 (954)
                                                     .....+.++.||||||+.  ++.+||||+|||++|.+.- ...   ...
T Consensus       322 -------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p-~~~---~~~  364 (412)
T cd04857         322 -------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVP-NWT---LQG  364 (412)
T ss_pred             -------------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcc-cCC---CCC
Confidence                                           001235588999999998  8999999999999998752 111   257


Q ss_pred             eEeecCCCchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhcccc
Q 042478          513 YALLSGTSMSCPHVAGIAALIKS----LHRDWSPAAIRSALVTTASQ  555 (954)
Q Consensus       513 y~~~SGTSMAaP~VAG~aALl~q----~~P~~sp~~Iks~L~~TA~~  555 (954)
                      |..|+|||||||||||++|||++    .+|+|+|.+||.+|++||++
T Consensus       365 ~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~  411 (412)
T cd04857         365 SQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKK  411 (412)
T ss_pred             eEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCcc
Confidence            99999999999999999999975    57999999999999999985

Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.

>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1

Probab=100.00  E-value=1.1e-38  Score=347.65  Aligned_cols=247  Identities=31%  Similarity=0.422  Sum_probs=196.4

Q ss_pred             CCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhccccccc
Q 042478          139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAG  218 (954)
Q Consensus       139 G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G  218 (954)
                      |+||+|+|||+|||++||+|.+....      .|......                 .......+..|||| +++|+++|
T Consensus         1 G~gv~VaviDsGv~~~h~~l~~~~~~------~~~~~~~~-----------------~~~~~~~d~~~HGT-~vAgiiag   56 (264)
T cd07487           1 GKGITVAVLDTGIDAPHPDFDGRIIR------FADFVNTV-----------------NGRTTPYDDNGHGT-HVAGIIAG   56 (264)
T ss_pred             CCCcEEEEEeCCCCCCCccccccccc------cccccccc-----------------cCCCCCCCCCCchH-HHHHHHhc
Confidence            89999999999999999999865332      11110000                 00001111227999 99998776


Q ss_pred             c-------ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcC----CccEEEecccCCCCCCCccCcccHHHHHHHH
Q 042478          219 L-------ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHD----GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFH  286 (954)
Q Consensus       219 ~-------~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~d----gvdVINlSlG~~~~~~~~~~~~d~~~~a~~~  286 (954)
                      .       ..|+||+|+|+.+|+++..+ +...++++||+|+++.    +++|||+|||...... +..  +.+..++.+
T Consensus        57 ~~~~~~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~-~~~--~~~~~~~~~  133 (264)
T cd07487          57 SGRASNGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPS-YGE--DPLCQAVER  133 (264)
T ss_pred             CCcccCCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCC-CCC--CHHHHHHHH
Confidence            5       79999999999999998776 6778999999999998    9999999999875322 344  788999999


Q ss_pred             HHHCCCEEEEeCCCCCCCCC--ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeecccccc
Q 042478          287 AIAKGITVVSSAGNDGPVAQ--TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAF  364 (954)
Q Consensus       287 A~~~Gi~VV~AAGN~G~~~~--t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~  364 (954)
                      +.++|++||+||||+|....  ..+...+++|+|||.+.+..                                      
T Consensus       134 ~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------------------------------  175 (264)
T cd07487         134 LWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP--------------------------------------  175 (264)
T ss_pred             HHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC--------------------------------------
Confidence            99999999999999998765  45567889999998543210                                      


Q ss_pred             CCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHH
Q 042478          365 DPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILS  444 (954)
Q Consensus       365 ~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~  444 (954)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (264)
T cd07487         176 --------------------------------------------------------------------------------  175 (264)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCC---CCCCCceEeecCCCc
Q 042478          445 YIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIG---SKDIQGYALLSGTSM  521 (954)
Q Consensus       445 ~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~---~~~~~~y~~~SGTSM  521 (954)
                                            ....++.||++||+.  ++++||||+|||++|+++++...   ....+.|..++||||
T Consensus       176 ----------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~GTS~  231 (264)
T cd07487         176 ----------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEMSGTSM  231 (264)
T ss_pred             ----------------------CCccccccccCCCCC--CCCcCCCEEccccceEeccccccccCCCCCCceEeccccch
Confidence                                  002367899999997  78999999999999999754321   111368999999999


Q ss_pred             hhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478          522 SCPHVAGIAALIKSLHRDWSPAAIRSALVTTAS  554 (954)
Q Consensus       522 AaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~  554 (954)
                      |||+|||++|||+|++|.+++.+||++|++||+
T Consensus       232 Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~  264 (264)
T cd07487         232 ATPHVSGAIALLLQANPILTPDEVKCILRDTAT  264 (264)
T ss_pred             HHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence            999999999999999999999999999999985

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10

Probab=100.00  E-value=2.5e-38  Score=349.79  Aligned_cols=253  Identities=26%  Similarity=0.344  Sum_probs=181.5

Q ss_pred             ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478          129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS  208 (954)
Q Consensus       129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G  208 (954)
                      +..+|+.+.+|+||+|||||||||..|| |.+.++.         +......            +   ..+...+.+|||
T Consensus        10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~---------~~~~~~~------------~---~~~~~~D~~gHG   64 (298)
T cd07494          10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ---------VRVVLAP------------G---ATDPACDENGHG   64 (298)
T ss_pred             hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc---------ceeecCC------------C---CCCCCCCCCCcc
Confidence            5689999999999999999999999998 7644332         1000000            0   011122233899


Q ss_pred             hhhccccccccceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhcCCccEEEecccCCCCCCC--c----cCcccHHHH
Q 042478          209 TNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFS--Y----IDQRDSIAI  282 (954)
Q Consensus       209 Ta~v~G~a~G~~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~--~----~~~~d~~~~  282 (954)
                      | |++|+    +.||||+|+|+.||+++.   ..+++++||+||+++|+||||||||.......  |    ......+..
T Consensus        65 T-~vag~----i~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~  136 (298)
T cd07494          65 T-GESAN----LFAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAA  136 (298)
T ss_pred             h-heeec----eeEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeecccCCCCcccccccccchhhHHHHH
Confidence            9 88875    579999999999999854   56789999999999999999999998641110  1    000135778


Q ss_pred             HHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeecccc
Q 042478          283 GSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERI  362 (954)
Q Consensus       283 a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~  362 (954)
                      ++..|.++|++||+||||++.   .+++..|++|+|||++.+..         +...                       
T Consensus       137 ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g~~~-----------------------  181 (298)
T cd07494         137 TLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------GARR-----------------------  181 (298)
T ss_pred             HHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------Cccc-----------------------
Confidence            888999999999999999984   46888999999999754421         0000                       


Q ss_pred             ccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHH
Q 042478          363 AFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQI  442 (954)
Q Consensus       363 ~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l  442 (954)
                                                                                                      
T Consensus       182 --------------------------------------------------------------------------------  181 (298)
T cd07494         182 --------------------------------------------------------------------------------  181 (298)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeE----------------EecCCceEecCCCC-
Q 042478          443 LSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDI----------------VAPGVDILSAYPPI-  505 (954)
Q Consensus       443 ~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI----------------~APG~~I~sa~~~~-  505 (954)
                                              .....+.|+|   . ..+++.|||+                +|||..|.+++... 
T Consensus       182 ------------------------~~~~~~~~~s---~-~~~g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~  233 (298)
T cd07494         182 ------------------------ASSYASGFRS---K-IYPGRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFP  233 (298)
T ss_pred             ------------------------ccccccCccc---c-cCCCCccCccccccCcCCcccccccccCCCcceeccccCCC
Confidence                                    0000011111   1 1245556665                47999997655321 


Q ss_pred             -CCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCC
Q 042478          506 -GSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTG  557 (954)
Q Consensus       506 -~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~  557 (954)
                       ....++.|..++|||||||||||++|||+|++|.|++++||.+|+.||+++.
T Consensus       234 ~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~  286 (298)
T cd07494         234 DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVT  286 (298)
T ss_pred             CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC
Confidence             1111367999999999999999999999999999999999999999999653

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin

Probab=100.00  E-value=2.5e-38  Score=346.86  Aligned_cols=251  Identities=29%  Similarity=0.301  Sum_probs=193.1

Q ss_pred             ccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhh
Q 042478          131 NLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTN  210 (954)
Q Consensus       131 ~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa  210 (954)
                      .+|..+.+|+||+|||||||||++||+|.+....     ..++ .+..+..+.   ++.   +  .......+.+|||| 
T Consensus         1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~-----~~~~-~~~~~~~~~---~~~---~--~~~~~~~~~~gHGT-   65 (273)
T cd07485           1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG-----DGYD-PAVNGYNFV---PNV---G--DIDNDVSVGGGHGT-   65 (273)
T ss_pred             CccccccCCCCcEEEEEeCCCCCCChhhccCCCC-----CCcc-cccCCcccc---ccc---C--CcCCCCCCCCCCHH-
Confidence            3799999999999999999999999999876211     0000 000000000   000   0  00111122238999 


Q ss_pred             hcccccccc-----c-------eeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcc
Q 042478          211 TDEGLAAGL-----A-------RGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQR  277 (954)
Q Consensus       211 ~v~G~a~G~-----~-------~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~  277 (954)
                      |++|++++.     .       .|+||+|+|+.+|++...+ +...++++||+||++.|++|||||||.... . .+.  
T Consensus        66 ~VAgiia~~~~~~~~~g~i~~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~-~-~~~--  141 (273)
T cd07485          66 HVAGTIAAVNNNGGGVGGIAGAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGG-G-IYS--  141 (273)
T ss_pred             HHHHHHHcccCCCcceeccccccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCCc-c-ccC--
Confidence            999987652     2       3499999999999998754 778889999999999999999999998742 2 333  


Q ss_pred             cHHHHHHHHHHHC-------CCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcC
Q 042478          278 DSIAIGSFHAIAK-------GITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVS  350 (954)
Q Consensus       278 d~~~~a~~~A~~~-------Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~  350 (954)
                      ..+..++..+.++       |+++|+||||+|......++..|++|+||+++.                           
T Consensus       142 ~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~---------------------------  194 (273)
T cd07485         142 PLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT---------------------------  194 (273)
T ss_pred             HHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC---------------------------
Confidence            6677888888888       999999999999887666788899999997431                           


Q ss_pred             CceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccc
Q 042478          351 HGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIP  430 (954)
Q Consensus       351 ~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip  430 (954)
                                                                                                      
T Consensus       195 --------------------------------------------------------------------------------  194 (273)
T cd07485         195 --------------------------------------------------------------------------------  194 (273)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCC-ceEecCCCCCCCC
Q 042478          431 CIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGV-DILSAYPPIGSKD  509 (954)
Q Consensus       431 ~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~  509 (954)
                                                           .+.++.||++|+..        ||+|||. .|+++++......
T Consensus       195 -------------------------------------~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~~~  229 (273)
T cd07485         195 -------------------------------------NDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDGDG  229 (273)
T ss_pred             -------------------------------------CCCcCccccCCCce--------EEEeCCCCccccccccccCCC
Confidence                                                 13356899999987        9999999 9999887643222


Q ss_pred             CCceEeecCCCchhHHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 042478          510 IQGYALLSGTSMSCPHVAGIAALIKSLHRD-WSPAAIRSALVTT  552 (954)
Q Consensus       510 ~~~y~~~SGTSMAaP~VAG~aALl~q~~P~-~sp~~Iks~L~~T  552 (954)
                      .+.|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus       230 ~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T  273 (273)
T cd07485         230 GGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES  273 (273)
T ss_pred             CCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence            467999999999999999999999999999 9999999999986

Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev

>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins

Probab=100.00  E-value=7.5e-38  Score=339.69  Aligned_cols=229  Identities=35%  Similarity=0.433  Sum_probs=191.9

Q ss_pred             cccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccC--CCCCCCchh
Q 042478          132 LSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKG--IMDMINAST  209 (954)
Q Consensus       132 ~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~--~~~~~G~GT  209 (954)
                      .|..+++|+||+|||||+||+++||+|.+....              +..|               ..+  ..+..||||
T Consensus        17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~~~~--------------~~~~---------------~~~~~~~d~~~HGT   67 (255)
T cd04077          17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGRAIW--------------GADF---------------VGGDPDSDCNGHGT   67 (255)
T ss_pred             eEecCCCCCCcEEEEEcCCCCCCChhhhCCeee--------------eeec---------------CCCCCCCCCCccHH
Confidence            677889999999999999999999999754221              0001               111  122238999


Q ss_pred             hhccccccccceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcC-----CccEEEecccCCCCCCCccCcccHHHHH
Q 042478          210 NTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHD-----GVDVLSVSIGNEIPLFSYIDQRDSIAIG  283 (954)
Q Consensus       210 a~v~G~a~G~~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~d-----gvdVINlSlG~~~~~~~~~~~~d~~~~a  283 (954)
                       +++|++++...||||+|+|+.+|+++..+ ...++++++++|++++     +++|||+|||...  .      ..+..+
T Consensus        68 -~vAgiia~~~~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~--~------~~~~~~  138 (255)
T cd04077          68 -HVAGTVGGKTYGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA--S------TALDAA  138 (255)
T ss_pred             -HHHHHHHccccCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC--C------HHHHHH
Confidence             99999999889999999999999998775 6778999999999987     4899999999874  2      567788


Q ss_pred             HHHHHHCCCEEEEeCCCCCCCC-CccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeecccc
Q 042478          284 SFHAIAKGITVVSSAGNDGPVA-QTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERI  362 (954)
Q Consensus       284 ~~~A~~~Gi~VV~AAGN~G~~~-~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~  362 (954)
                      +.++.++|+++|+||||+|.+. ...++..|++|+|||.+.+                                      
T Consensus       139 ~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~--------------------------------------  180 (255)
T cd04077         139 VAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD--------------------------------------  180 (255)
T ss_pred             HHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC--------------------------------------
Confidence            8999999999999999999765 4556778999999975321                                      


Q ss_pred             ccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHH
Q 042478          363 AFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQI  442 (954)
Q Consensus       363 ~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l  442 (954)
                                                                                                      
T Consensus       181 --------------------------------------------------------------------------------  180 (255)
T cd04077         181 --------------------------------------------------------------------------------  180 (255)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCch
Q 042478          443 LSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMS  522 (954)
Q Consensus       443 ~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMA  522 (954)
                                                +..+.||++||..        ||+|||.+|.++....    ++.|..++|||||
T Consensus       181 --------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~----~~~~~~~~GTS~A  222 (255)
T cd04077         181 --------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIGS----DTATATLSGTSMA  222 (255)
T ss_pred             --------------------------CCccCcccCCCCC--------cEEeCCCCeEecccCC----CCcEEeeCcHHHH
Confidence                                      2257899999987        9999999999988741    2689999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478          523 CPHVAGIAALIKSLHRDWSPAAIRSALVTTAS  554 (954)
Q Consensus       523 aP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~  554 (954)
                      ||+|||++|||+|++|++++++||++|++||+
T Consensus       223 ap~vaG~~All~~~~p~~~~~~v~~~L~~tA~  254 (255)
T cd04077         223 APHVAGLAAYLLSLGPDLSPAEVKARLLNLAT  254 (255)
T ss_pred             HHHHHHHHHHHHhhCCCCCHHHHHHHHHhhcc
Confidence            99999999999999999999999999999997

The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti

>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-38  Score=341.84  Aligned_cols=332  Identities=27%  Similarity=0.337  Sum_probs=253.6

Q ss_pred             cCCCceEEEEEcCCCCCCchhchhhHHHHHHHHhCcccc--ccc----------------cEEEEEc---cceeEEEEEc
Q 042478           29 GATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEA--AKH----------------SILYSYK---HGFSGFAARL   87 (954)
Q Consensus        29 ~~~~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~--~~~----------------~i~~~y~---~~~nGfs~~l   87 (954)
                      ......|||.++..   .++...+.|.+|++........  ...                .+.+.|.   ..|+|+.-.+
T Consensus        77 ~~~~~~YiV~f~~~---~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~f  153 (501)
T KOG1153|consen   77 EALPSRYIVVFKPD---ASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYF  153 (501)
T ss_pred             cccccceEEEeCCC---ccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccccc
Confidence            44578999999953   3344567888888876642111  000                1333333   2788999999


Q ss_pred             CHHHHHHHHcCCCeeEEEeCceeeccc--------ccccccccccccc-----CccccccCCCCCCceEEEEEeCCCCCC
Q 042478           88 TKTQAEKIAELPGVVQVIPNGILKLHT--------TRSWEFMGLHYYQ-----SSKNLSTESNMGEGTIIGIIDTGVWPE  154 (954)
Q Consensus        88 ~~~~~~~L~~~p~V~~V~~~~~~~l~t--------~~s~~~~gl~~~~-----~~~~~w~~~~~G~GVvVgVIDTGId~~  154 (954)
                      +.+-+..++..|-++.++++..++...        .-.|.+..+....     .......+-..|+||...|+||||+.+
T Consensus       154 t~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~  233 (501)
T KOG1153|consen  154 TGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIE  233 (501)
T ss_pred             ccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEeccccccc
Confidence            999999999999999999998776433        2345433332211     011111223479999999999999999


Q ss_pred             CCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhccccccccceeccCCCcEEEEEE
Q 042478          155 SESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKA  234 (954)
Q Consensus       155 Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G~~~GvAP~A~L~~yKv  234 (954)
                      ||+|.++.        .| |.|-..                  .+...+.+|||| |++|+.+|+..|||.+++|+++||
T Consensus       234 H~dFegRa--------~w-Ga~i~~------------------~~~~~D~nGHGT-H~AG~I~sKt~GvAK~s~lvaVKV  285 (501)
T KOG1153|consen  234 HPDFEGRA--------IW-GATIPP------------------KDGDEDCNGHGT-HVAGLIGSKTFGVAKNSNLVAVKV  285 (501)
T ss_pred             ccccccce--------ec-ccccCC------------------CCcccccCCCcc-eeeeeeeccccccccccceEEEEE
Confidence            99998763        22 222110                  011122238999 999999999999999999999999


Q ss_pred             ecCCC-CChHHHHHHHHHHhcC---------CccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCC
Q 042478          235 CWDIG-CTDADVLKAFDKAIHD---------GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPV  304 (954)
Q Consensus       235 ~~~~g-~~~~dil~Aid~Ai~d---------gvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~  304 (954)
                      ++++| +..+++++++|++++.         +..|.|||+|+..  .      -.+..|+++|.+.||++++||||+-.+
T Consensus       286 l~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~--S------~aLn~AV~~A~~~Gi~fa~AAGNe~eD  357 (501)
T KOG1153|consen  286 LRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFR--S------AALNMAVNAASERGIHFAVAAGNEHED  357 (501)
T ss_pred             eccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcc--c------HHHHHHHHHHhhcCeEEEEcCCCcchh
Confidence            99998 8999999999999986         5689999999985  2      568899999999999999999999877


Q ss_pred             CC-ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCccccc
Q 042478          305 AQ-TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAA  383 (954)
Q Consensus       305 ~~-t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~  383 (954)
                      .+ +.++.+..+|||||++..                                                           
T Consensus       358 AC~~SPass~~aITVGAst~~-----------------------------------------------------------  378 (501)
T KOG1153|consen  358 ACNSSPASSKKAITVGASTKN-----------------------------------------------------------  378 (501)
T ss_pred             hhccCcccccccEEecccccc-----------------------------------------------------------
Confidence            55 455788899999997522                                                           


Q ss_pred             ceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceee
Q 042478          384 GKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVI  463 (954)
Q Consensus       384 Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~  463 (954)
                                                                                                      
T Consensus       379 --------------------------------------------------------------------------------  378 (501)
T KOG1153|consen  379 --------------------------------------------------------------------------------  378 (501)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhCCC----
Q 042478          464 GDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRD----  539 (954)
Q Consensus       464 ~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~----  539 (954)
                           +.+|.||+||+++        ||.|||++|+|+|.+.    ...-.+.||||||+|||||++|..++.+|.    
T Consensus       379 -----D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs----~~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~  441 (501)
T KOG1153|consen  379 -----DTIAFFSNWGKCV--------DIFAPGVNILSSWIGS----NNATAILSGTSMASPHVAGLAAYFLSLGPLPDSS  441 (501)
T ss_pred             -----cchhhhcCcccee--------eeecCchhhhhhhhcC----ccchheeecccccCcchhhhHHHhhhcCCCChHH
Confidence                 4578999999999        9999999999999873    246789999999999999999999999883    


Q ss_pred             -----CCHHHHHHHHHhcccc
Q 042478          540 -----WSPAAIRSALVTTASQ  555 (954)
Q Consensus       540 -----~sp~~Iks~L~~TA~~  555 (954)
                           .||.++|..+..-..+
T Consensus       442 f~n~~~s~~~lk~~~l~~~~~  462 (501)
T KOG1153|consen  442 FANDAGSPSELKKRLLKFKTQ  462 (501)
T ss_pred             hhhccCChHHhhhhhhccccc
Confidence                 3888998888776654

>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins

Probab=100.00  E-value=1.5e-37  Score=338.29  Aligned_cols=235  Identities=32%  Similarity=0.411  Sum_probs=193.9

Q ss_pred             ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478          129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS  208 (954)
Q Consensus       129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G  208 (954)
                      ...+|..+ +|+||+|||||+|||++||+|....+.     ..|        ++    ++..        .+..+..|||
T Consensus        18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~~~~-----~~~--------~~----~~~~--------~~~~d~~~HG   71 (260)
T cd07484          18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKVKFV-----LGY--------DF----VDND--------SDAMDDNGHG   71 (260)
T ss_pred             hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccCCcc-----cce--------ec----cCCC--------CCCCCCCCcH
Confidence            56789988 999999999999999999998433221     001        00    1000        0011123799


Q ss_pred             hhhcccccccc------ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHH
Q 042478          209 TNTDEGLAAGL------ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIA  281 (954)
Q Consensus       209 Ta~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~  281 (954)
                      | +++|++.+.      +.|+||+|+|+.+|+++..+ +...++++||+++++.|++|||+|||...     ..  ..+.
T Consensus        72 T-~vagii~~~~~~~~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~-----~~--~~~~  143 (260)
T cd07484          72 T-HVAGIIAAATNNGTGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL-----GS--TALQ  143 (260)
T ss_pred             H-HHHHHHhCccCCCCceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC-----CC--HHHH
Confidence            9 999987653      68999999999999998765 78889999999999999999999999874     22  5677


Q ss_pred             HHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccc
Q 042478          282 IGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSER  361 (954)
Q Consensus       282 ~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~  361 (954)
                      .++..+.++|++||+||||+|.....+++..|++|+||+.+.+                                     
T Consensus       144 ~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------------------------  186 (260)
T cd07484         144 EAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD-------------------------------------  186 (260)
T ss_pred             HHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC-------------------------------------
Confidence            8888899999999999999998888888899999999974321                                     


Q ss_pred             cccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHH
Q 042478          362 IAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQ  441 (954)
Q Consensus       362 ~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~  441 (954)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (260)
T cd07484         187 --------------------------------------------------------------------------------  186 (260)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCc
Q 042478          442 ILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSM  521 (954)
Q Consensus       442 l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSM  521 (954)
                                                 +..+.||++|+..        |++|||.+|++..+.      +.|..++||||
T Consensus       187 ---------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~------~~~~~~~GTS~  225 (260)
T cd07484         187 ---------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPD------GDYAYMSGTSM  225 (260)
T ss_pred             ---------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCC------CCEEEeeeHHH
Confidence                                       2356789999876        999999999999876      68999999999


Q ss_pred             hhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 042478          522 SCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQT  556 (954)
Q Consensus       522 AaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~  556 (954)
                      |||+|||++||+++++| |++.+||++|++||+++
T Consensus       226 Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~  259 (260)
T cd07484         226 ATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI  259 (260)
T ss_pred             HHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence            99999999999999999 99999999999999864

Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid

>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins

Probab=100.00  E-value=9.6e-38  Score=345.37  Aligned_cols=250  Identities=24%  Similarity=0.241  Sum_probs=180.5

Q ss_pred             EEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccC-CCCCCCchhhhccccccc---
Q 042478          143 IIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKG-IMDMINASTNTDEGLAAG---  218 (954)
Q Consensus       143 vVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~-~~~~~G~GTa~v~G~a~G---  218 (954)
                      +|||||||||..||+|.+....       +.       .+    +.         ..+ ..+.+|||| |++|++++   
T Consensus         2 ~VaviDtGi~~~hp~l~~~~~~-------~~-------~~----~~---------~~~~~~d~~gHGT-~vAgiia~~~~   53 (291)
T cd04847           2 IVCVLDSGINRGHPLLAPALAE-------DD-------LD----SD---------EPGWTADDLGHGT-AVAGLALYGDL   53 (291)
T ss_pred             EEEEecCCCCCCChhhhhhhcc-------cc-------cc----cc---------CCCCcCCCCCChH-HHHHHHHcCcc
Confidence            7999999999999999754221       00       00    00         000 112238999 99998764   


Q ss_pred             ---cceeccCCCcEEEEEEecCCC-----CChHHHHHHHHHHhcC---CccEEEecccCCCCCCCccCcccHHHHHHHH-
Q 042478          219 ---LARGGAPLAHLAIYKACWDIG-----CTDADVLKAFDKAIHD---GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFH-  286 (954)
Q Consensus       219 ---~~~GvAP~A~L~~yKv~~~~g-----~~~~dil~Aid~Ai~d---gvdVINlSlG~~~~~~~~~~~~d~~~~a~~~-  286 (954)
                         ...|+||+|+|+.+||+...|     .+..++++||+||++.   +++|||||||.....  .......+..++++ 
T Consensus        54 ~~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~--~~~~~~~~~~~id~~  131 (291)
T cd04847          54 TLPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPI--DDGRPSSWAAALDQL  131 (291)
T ss_pred             cCCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCc--cCCCCCcHHHHHHHH
Confidence               257999999999999998763     4667899999999985   359999999997521  11101245666654 


Q ss_pred             HHHCCCEEEEeCCCCCCCCCc------------cccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCcee
Q 042478          287 AIAKGITVVSSAGNDGPVAQT------------IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFT  354 (954)
Q Consensus       287 A~~~Gi~VV~AAGN~G~~~~t------------~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~  354 (954)
                      +.++|++||+||||+|.....            .+...+++|+|||.+.+........                      
T Consensus       132 a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~----------------------  189 (291)
T cd04847         132 AAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRAR----------------------  189 (291)
T ss_pred             hccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCccc----------------------
Confidence            568999999999999977543            2355789999999765432100000                      


Q ss_pred             eeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEe
Q 042478          355 GLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKV  434 (954)
Q Consensus       355 ~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i  434 (954)
                                         .                   +                                        
T Consensus       190 -------------------~-------------------~----------------------------------------  191 (291)
T cd04847         190 -------------------Y-------------------S----------------------------------------  191 (291)
T ss_pred             -------------------c-------------------c----------------------------------------
Confidence                               0                   0                                        


Q ss_pred             ehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCC---------
Q 042478          435 NYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPI---------  505 (954)
Q Consensus       435 ~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~---------  505 (954)
                                                    .......+.||+|||..  ++.+||||+|||++|.+..+..         
T Consensus       192 ------------------------------~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~  239 (291)
T cd04847         192 ------------------------------AVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLL  239 (291)
T ss_pred             ------------------------------ccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcceee
Confidence                                          00011123499999998  8999999999999998764321         


Q ss_pred             ---CCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478          506 ---GSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTAS  554 (954)
Q Consensus       506 ---~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~  554 (954)
                         .......|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus       240 ~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~  291 (291)
T cd04847         240 TTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE  291 (291)
T ss_pred             ecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence               1112478999999999999999999999999999999999999999984

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases

Probab=100.00  E-value=2.5e-37  Score=342.26  Aligned_cols=265  Identities=32%  Similarity=0.351  Sum_probs=198.7

Q ss_pred             CCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhccc
Q 042478          135 ESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEG  214 (954)
Q Consensus       135 ~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G  214 (954)
                      .+++|+||+|||||||||++||+|.+....              +..+    .++++.....+....++.+|||| |++|
T Consensus         2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~--------------~~~~----~~~~~~~~~~~~~~~~d~~~HGT-~vAg   62 (293)
T cd04842           2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN--------------KTNL----FHRKIVRYDSLSDTKDDVDGHGT-HVAG   62 (293)
T ss_pred             CCcCCcCCEEEEEecCCCCCCCcccCCCcC--------------cCcc----CcccEEEeeccCCCCCCCCCCcc-hhhe
Confidence            578999999999999999999999754221              0011    23444444444443334448999 9999


Q ss_pred             cccc---------cceeccCCCcEEEEEEecCCC--CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHH
Q 042478          215 LAAG---------LARGGAPLAHLAIYKACWDIG--CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIG  283 (954)
Q Consensus       215 ~a~G---------~~~GvAP~A~L~~yKv~~~~g--~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a  283 (954)
                      ++++         .+.|+||+|+|+.+|+++..+  ....++..+++++.+.|++|||+|||......  +   .....+
T Consensus        63 iia~~~~~~~~~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~--~---~~~~~~  137 (293)
T cd04842          63 IIAGKGNDSSSISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNG--Y---TLLARA  137 (293)
T ss_pred             eeccCCcCCCcccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCccc--c---chHHHH
Confidence            8876         469999999999999998765  56677899999999999999999999975211  1   334445


Q ss_pred             HHHHH-H-CCCEEEEeCCCCCCCCC---ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeee
Q 042478          284 SFHAI-A-KGITVVSSAGNDGPVAQ---TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTY  358 (954)
Q Consensus       284 ~~~A~-~-~Gi~VV~AAGN~G~~~~---t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~  358 (954)
                      +.++. + +|+++|+||||+|....   ..+...+++|+|||++.+.....                             
T Consensus       138 ~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~-----------------------------  188 (293)
T cd04842         138 YDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG-----------------------------  188 (293)
T ss_pred             HHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc-----------------------------
Confidence            55444 3 79999999999997764   56678899999999764431000                             


Q ss_pred             ccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhh
Q 042478          359 SERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEV  438 (954)
Q Consensus       359 ~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~  438 (954)
                                 ..|..                                                                
T Consensus       189 -----------~~~~~----------------------------------------------------------------  193 (293)
T cd04842         189 -----------EGGLG----------------------------------------------------------------  193 (293)
T ss_pred             -----------ccccc----------------------------------------------------------------
Confidence                       00000                                                                


Q ss_pred             HHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCC---CCCCCCceEe
Q 042478          439 GTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPI---GSKDIQGYAL  515 (954)
Q Consensus       439 g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~---~~~~~~~y~~  515 (954)
                                               .......++.||++||+.  ++++||||+|||++|+++++..   .......|..
T Consensus       194 -------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~~~~~~~~~~~~~  246 (293)
T cd04842         194 -------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGGIGDTSDSAYTS  246 (293)
T ss_pred             -------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCCCCCCCChhheee
Confidence                                     012235688999999987  7899999999999999997542   0111367999


Q ss_pred             ecCCCchhHHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 042478          516 LSGTSMSCPHVAGIAALIKSLH-----R---DWSPAAIRSALVTTAS  554 (954)
Q Consensus       516 ~SGTSMAaP~VAG~aALl~q~~-----P---~~sp~~Iks~L~~TA~  554 (954)
                      ++|||||||||||++|||+|++     |   .+++.++|++|++||+
T Consensus       247 ~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~  293 (293)
T cd04842         247 KSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR  293 (293)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence            9999999999999999999985     4   6677899999999985

Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases

>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6

Probab=100.00  E-value=4.9e-37  Score=332.98  Aligned_cols=248  Identities=31%  Similarity=0.399  Sum_probs=183.2

Q ss_pred             ceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhcccccccc-
Q 042478          141 GTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGL-  219 (954)
Q Consensus       141 GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G~-  219 (954)
                      ||+|||||||||++||+|.+....       |.       .|...   +     .+......+.+|||| +++|++++. 
T Consensus         1 GV~VaviDsGv~~~hp~l~~~~~~-------~~-------~~~~~---~-----~~~~~~~~d~~~HGT-~vAgiia~~~   57 (254)
T cd07490           1 GVTVAVLDTGVDADHPDLAGRVAQ-------WA-------DFDEN---R-----RISATEVFDAGGHGT-HVSGTIGGGG   57 (254)
T ss_pred             CCEEEEEeCCCCCCCcchhcccCC-------ce-------eccCC---C-----CCCCCCCCCCCCcHH-HHHHHHhcCC
Confidence            799999999999999999754211       11       11100   0     000011112237999 999987664 


Q ss_pred             ----ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHH-CCCEE
Q 042478          220 ----ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIA-KGITV  294 (954)
Q Consensus       220 ----~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~-~Gi~V  294 (954)
                          ..|+||+|+|+.+|++...++..+++++||+||++.+++|||||||...    ...  +++..+++.+.+ +|++|
T Consensus        58 ~~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~----~~~--~~~~~~~~~~~~~~g~lv  131 (254)
T cd07490          58 AKGVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTY----YSE--DPLEEAVEALSNQTGALF  131 (254)
T ss_pred             CCCCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCC----CCC--cHHHHHHHHHHHcCCCEE
Confidence                6799999999999999877788899999999999999999999999875    223  667766666554 69999


Q ss_pred             EEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCC
Q 042478          295 VSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQ  374 (954)
Q Consensus       295 V~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~  374 (954)
                      |+||||+|......+...|++|+|||++.+........                                          
T Consensus       132 V~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~------------------------------------------  169 (254)
T cd07490         132 VVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSS------------------------------------------  169 (254)
T ss_pred             EEeCCCCCCCCCCCCccCCceeEEecccccCCccCccC------------------------------------------
Confidence            99999999887777788899999999754321000000                                          


Q ss_pred             CCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCcc
Q 042478          375 GSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIA  454 (954)
Q Consensus       375 ~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~  454 (954)
                                                                                                      
T Consensus       170 --------------------------------------------------------------------------------  169 (254)
T cd07490         170 --------------------------------------------------------------------------------  169 (254)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHHHH
Q 042478          455 KLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIK  534 (954)
Q Consensus       455 ~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~  534 (954)
                                  ........++.+|.. .....|||+.|||.+|++++...  ...+.|..++|||||||+|||++|||+
T Consensus       170 ------------~g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~--~~~~~~~~~~GTS~AaP~vaG~aAl~~  234 (254)
T cd07490         170 ------------FGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA--NGDGQYTRLSGTSMAAPHVAGVAALLA  234 (254)
T ss_pred             ------------CcccccccccCCCCC-ccCCcCceEEeccCCeEccccCC--CCCCCeeecccHHHHHHHHHHHHHHHH
Confidence                        000011223334433 24568999999999999965321  123789999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHhccc
Q 042478          535 SLHRDWSPAAIRSALVTTAS  554 (954)
Q Consensus       535 q~~P~~sp~~Iks~L~~TA~  554 (954)
                      |++|+|++.+||++|++||+
T Consensus       235 ~~~p~~~~~~i~~~L~~tA~  254 (254)
T cd07490         235 AAHPDLSPEQIKDALTETAY  254 (254)
T ss_pred             HHCCCCCHHHHHHHHHHhcC
Confidence            99999999999999999985

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13

Probab=100.00  E-value=9.7e-37  Score=336.37  Aligned_cols=253  Identities=27%  Similarity=0.316  Sum_probs=184.2

Q ss_pred             ceEEEEEeCCCCCCCCCcCCCCCCCC-CC---CCCcccccccCC-CCCCCCCCccccceeccccC-CCCCCCchhhhccc
Q 042478          141 GTIIGIIDTGVWPESESFSDKGMGQA-PV---PPHWKGICQKGE-KFNSSNCNRKLIGARWFIKG-IMDMINASTNTDEG  214 (954)
Q Consensus       141 GVvVgVIDTGId~~Hp~f~d~~~~~~-~~---p~~~~g~~~~~~-~f~~~~cn~kiiga~~~~~~-~~~~~G~GTa~v~G  214 (954)
                      ||+|||||||||++||+|.+.....+ -+   +...++.-.... .....+.+.+...-..+... ..+..|||| |++|
T Consensus         1 gV~VaviDtGi~~~Hp~l~~~~~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~HGT-~vAg   79 (285)
T cd07496           1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVSPSSWHGT-HVAG   79 (285)
T ss_pred             CCEEEEecCCCCCCCcchhhccccCcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCCCCCCCHH-HHHH
Confidence            79999999999999999986542200 00   000111000000 00000111111000000000 111227999 9999


Q ss_pred             ccccc------ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHh----------cCCccEEEecccCCCCCCCccCccc
Q 042478          215 LAAGL------ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAI----------HDGVDVLSVSIGNEIPLFSYIDQRD  278 (954)
Q Consensus       215 ~a~G~------~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai----------~dgvdVINlSlG~~~~~~~~~~~~d  278 (954)
                      ++++.      +.||||+|+|+.+|+++..+.+.+++++|++||+          .++++|||||||...    ...  .
T Consensus        80 iiaa~~~~~~~~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~~----~~~--~  153 (285)
T cd07496          80 TIAAVTNNGVGVAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDG----ACS--A  153 (285)
T ss_pred             HHhCcCCCCCCceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCCC----CCC--H
Confidence            87764      5699999999999999877778899999999998          467899999999875    213  5


Q ss_pred             HHHHHHHHHHHCCCEEEEeCCCCCCCC-CccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeee
Q 042478          279 SIAIGSFHAIAKGITVVSSAGNDGPVA-QTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLT  357 (954)
Q Consensus       279 ~~~~a~~~A~~~Gi~VV~AAGN~G~~~-~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~  357 (954)
                      .+..++..+.++|++||+||||+|.+. ...+...|++|+|||++.                                  
T Consensus       154 ~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~----------------------------------  199 (285)
T cd07496         154 TMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL----------------------------------  199 (285)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC----------------------------------
Confidence            788889999999999999999999775 556677889999997431                                  


Q ss_pred             eccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehh
Q 042478          358 YSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYE  437 (954)
Q Consensus       358 ~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~  437 (954)
                                                                                                      
T Consensus       200 --------------------------------------------------------------------------------  199 (285)
T cd07496         200 --------------------------------------------------------------------------------  199 (285)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCC---------C
Q 042478          438 VGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGS---------K  508 (954)
Q Consensus       438 ~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~---------~  508 (954)
                                                    .+.++.||++|+..        ||.|||++|.+.......         .
T Consensus       200 ------------------------------~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~~~~~~~  241 (285)
T cd07496         200 ------------------------------RGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTTSP  241 (285)
T ss_pred             ------------------------------CCCcccccCCCCCC--------CEEeCCCCccccCCCCccccccccccCC
Confidence                                          13357899999987        999999999988764311         1


Q ss_pred             CCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 042478          509 DIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTT  552 (954)
Q Consensus       509 ~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~T  552 (954)
                      ....|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus       242 ~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t  285 (285)
T cd07496         242 GGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST  285 (285)
T ss_pred             CCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence            13578999999999999999999999999999999999999876

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins

Probab=100.00  E-value=3.7e-36  Score=327.08  Aligned_cols=244  Identities=33%  Similarity=0.416  Sum_probs=184.6

Q ss_pred             CceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCC--CCCCCchhhhcccccc
Q 042478          140 EGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGI--MDMINASTNTDEGLAA  217 (954)
Q Consensus       140 ~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~--~~~~G~GTa~v~G~a~  217 (954)
                      +||+|||||||||++||+|.+..+.. .....+.+....+..+     -.+..+..+.....  .+..|||| +++|+++
T Consensus         2 ~~v~V~iiDtGid~~h~~l~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~d~~~HGT-~va~ii~   74 (259)
T cd07473           2 GDVVVAVIDTGVDYNHPDLKDNMWVN-PGEIPGNGIDDDGNGY-----VDDIYGWNFVNNDNDPMDDNGHGT-HVAGIIG   74 (259)
T ss_pred             CCCEEEEEeCCCCCCChhhccccccC-cccccccCcccCCCCc-----ccCCCcccccCCCCCCCCCCCcHH-HHHHHHH
Confidence            68999999999999999998754320 0000111111111111     11111111111111  12228999 9999877


Q ss_pred             ccc------eeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHC
Q 042478          218 GLA------RGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAK  290 (954)
Q Consensus       218 G~~------~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~  290 (954)
                      |..      .|+||+|+|+.+|++...+ ++..++++||++|++.+++|||+|||...    . .  ..+..++.++.++
T Consensus        75 ~~~~~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~----~-~--~~~~~~~~~~~~~  147 (259)
T cd07473          75 AVGNNGIGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGG----P-S--QALRDAIARAIDA  147 (259)
T ss_pred             CcCCCCCceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC----C-C--HHHHHHHHHHHhC
Confidence            653      8999999999999998776 88899999999999999999999999875    2 2  6778889999999


Q ss_pred             CCEEEEeCCCCCCCC---Ccccc--CCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccC
Q 042478          291 GITVVSSAGNDGPVA---QTIVN--TAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFD  365 (954)
Q Consensus       291 Gi~VV~AAGN~G~~~---~t~~~--~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~  365 (954)
                      |+++|+||||+|...   ..++.  ..|++|+||+.+.                                          
T Consensus       148 g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~------------------------------------------  185 (259)
T cd07473         148 GILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS------------------------------------------  185 (259)
T ss_pred             CCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC------------------------------------------
Confidence            999999999999762   23332  3578888887431                                          


Q ss_pred             CCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHH
Q 042478          366 PDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSY  445 (954)
Q Consensus       366 ~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~  445 (954)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (259)
T cd07473         186 --------------------------------------------------------------------------------  185 (259)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHH
Q 042478          446 IRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPH  525 (954)
Q Consensus       446 ~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~  525 (954)
                                            .+.++.||++||.       +||+.|||.++++..+.      +.|..++|||||||+
T Consensus       186 ----------------------~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~------~~~~~~~GTS~AaP~  230 (259)
T cd07473         186 ----------------------NDALASFSNYGKK-------TVDLAAPGVDILSTSPG------GGYGYMSGTSMATPH  230 (259)
T ss_pred             ----------------------CCCcCcccCCCCC-------CcEEEeccCCeEeccCC------CcEEEeccHhHHHHH
Confidence                                  1234568999986       36999999999998765      789999999999999


Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478          526 VAGIAALIKSLHRDWSPAAIRSALVTTAS  554 (954)
Q Consensus       526 VAG~aALl~q~~P~~sp~~Iks~L~~TA~  554 (954)
                      |||++||++|++|.+++++||++|++||+
T Consensus       231 vaG~~All~~~~~~~t~~~v~~~L~~tA~  259 (259)
T cd07473         231 VAGAAALLLSLNPNLTAAQIKDAILSSAD  259 (259)
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence            99999999999999999999999999985

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>KOG0886 consensus 40S ribosomal protein S2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.5e-37  Score=285.73  Aligned_cols=150  Identities=21%  Similarity=0.356  Sum_probs=145.8

Q ss_pred             ecCCCCCCccccccceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEE
Q 042478          793 AMAPPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFI  872 (954)
Q Consensus       793 ~~~~~~~~~~~~~~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~  872 (954)
                      +|||++          +++|+|||.||++.+++.|+|++||+|++++++++|+.++|+||+|++|+|+++|+ ||+.+++
T Consensus         6 kfdP~e----------iK~vylrc~GgEVgatsaLApKIgPLGLSpKkvGedIaKaT~dwKgl~vtvkLtIq-nR~A~i~   74 (167)
T KOG0886|consen    6 KFDPNE----------IKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGEDIAKATGDWKGLRVTVKLTIQ-NRQAQIE   74 (167)
T ss_pred             CCCccc----------eEEEEEEeecCccccccccccccccccCCccccchHHHHhhcccccceEEEEEEec-CcccceE
Confidence            799999          99999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             EeCCCHHHHHHHHhCCCCCCCCCCC--ceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCCCchhh
Q 042478          873 LKTPPASVLLLKAAGVEKGSKDPKQ--QKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETK  950 (954)
Q Consensus       873 ~~~p~~s~li~k~~~~~~~~~~~~~--~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~~~~~  950 (954)
                      | .|++|.||+|+|+++++++|+.+  ++.|+|+|++|.+||+++++.+.+++|++++|+|+|||+|+||+||++.|.++
T Consensus        75 V-vpSasaLiIkaLKEPpRDRKk~knikh~Gni~~deiv~iar~mr~rS~a~~l~gt~keilgt~~svgc~vDgk~Phdi  153 (167)
T KOG0886|consen   75 V-VPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVEIARIMRPRSLARELSGTVKEILGTAQSVGCTVDGKHPHDI  153 (167)
T ss_pred             E-cccHHHHHHHHhcCCcchhhhhccccccCcccHHHHHHHHHHhhhHhhhhhhhhhHHHHhchhhhcccccCCCChHHH
Confidence            9 99999999999999999999888  56799999999999999999999999999999999999999999999999998


Q ss_pred             hccC
Q 042478          951 KKEL  954 (954)
Q Consensus       951 ~~~~  954 (954)
                      .++|
T Consensus       154 ~~~i  157 (167)
T KOG0886|consen  154 IDEI  157 (167)
T ss_pred             Hhhh
Confidence            8764

>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15

Probab=100.00  E-value=2.2e-36  Score=325.47  Aligned_cols=231  Identities=32%  Similarity=0.403  Sum_probs=181.5

Q ss_pred             eEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhcccccccc--
Q 042478          142 TIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGL--  219 (954)
Q Consensus       142 VvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G~--  219 (954)
                      |+|||||+|||++||+|.+...    ....|.....          +          ....+.+|||| |++|+++|.  
T Consensus         1 V~VaviDsGi~~~hp~l~~~~~----~~~~~~~~~~----------~----------~~~~~~~~HGT-~vAgiiag~~~   55 (242)
T cd07498           1 VVVAIIDTGVDLNHPDLSGKPK----LVPGWNFVSN----------N----------DPTSDIDGHGT-ACAGVAAAVGN   55 (242)
T ss_pred             CEEEEecCCCCCCChhhccCcC----ccCCccccCC----------C----------CCCCCCCCCHH-HHHHHHHhccC
Confidence            6899999999999999986311    1111111000          0          00112237999 999987764  


Q ss_pred             ----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHH-CCCE
Q 042478          220 ----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIA-KGIT  293 (954)
Q Consensus       220 ----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~-~Gi~  293 (954)
                          +.|+||+|+|+.+|+++..+ +...++.++++||++.+++|||||||...... ...  ..+..++..+.. +|++
T Consensus        56 ~~~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~-~~~--~~~~~~~~~~~~~~gvl  132 (242)
T cd07498          56 NGLGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTE-SIS--SAIDNAATYGRNGKGGV  132 (242)
T ss_pred             CCceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCc-hHH--HHHHHHHHHHhhcCCeE
Confidence                58999999999999998764 67889999999999999999999999875222 223  667777888888 9999


Q ss_pred             EEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccC
Q 042478          294 VVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCR  373 (954)
Q Consensus       294 VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~  373 (954)
                      +|+||||+|......++..|++|+|||.+.+                                                 
T Consensus       133 iv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------------------------------------  163 (242)
T cd07498         133 VLFAAGNSGRSVSSGYAANPSVIAVAATDSN-------------------------------------------------  163 (242)
T ss_pred             EEEecCCCCCccCCCCcCCCCeEEEEEeCCC-------------------------------------------------
Confidence            9999999998876677889999999985421                                                 


Q ss_pred             CCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCc
Q 042478          374 QGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPI  453 (954)
Q Consensus       374 ~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~  453 (954)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (242)
T cd07498         164 --------------------------------------------------------------------------------  163 (242)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCC---CCCCCceEeecCCCchhHHHHHHH
Q 042478          454 AKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIG---SKDIQGYALLSGTSMSCPHVAGIA  530 (954)
Q Consensus       454 ~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~---~~~~~~y~~~SGTSMAaP~VAG~a  530 (954)
                                     +.++.||+|||..        |++|||.+++.......   ....+.|..++|||||||+|||++
T Consensus       164 ---------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~  220 (242)
T cd07498         164 ---------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGGYGSFSGTSFASPVAAGVA  220 (242)
T ss_pred             ---------------CCccCcCCCCCCe--------EEEeCcCCcccCCccccccccCCCCceEeeCcHHHHHHHHHHHH
Confidence                           2357899999987        99999999998843310   011367999999999999999999


Q ss_pred             HHHHhhCCCCCHHHHHHHHHhc
Q 042478          531 ALIKSLHRDWSPAAIRSALVTT  552 (954)
Q Consensus       531 ALl~q~~P~~sp~~Iks~L~~T  552 (954)
                      |||+|++|+|++++||++|+.|
T Consensus       221 All~~~~p~l~~~~i~~~L~~t  242 (242)
T cd07498         221 ALILSANPNLTPAEVEDILTST  242 (242)
T ss_pred             HHHHHhCCCCCHHHHHHHHHhC
Confidence            9999999999999999999975

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11

Probab=100.00  E-value=2.4e-36  Score=330.40  Aligned_cols=239  Identities=22%  Similarity=0.178  Sum_probs=173.4

Q ss_pred             ccccccCCC-CCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCc
Q 042478          129 SKNLSTESN-MGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINA  207 (954)
Q Consensus       129 ~~~~w~~~~-~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~  207 (954)
                      +..+|+... .|+||+|+|||+|||.+||+|.++...  .    +.       .+.                 ..+.+||
T Consensus         4 ~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~--~----~~-------~~~-----------------~~d~~gH   53 (277)
T cd04843           4 ARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT--L----IS-------GLT-----------------DQADSDH   53 (277)
T ss_pred             hHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc--c----cC-------CCC-----------------CCCCCCC
Confidence            567898754 599999999999999999999865332  0    00       000                 1122379


Q ss_pred             hhhhcccccccc-----ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhc----CCccEEEecccCCCCCCCcc---C
Q 042478          208 STNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIH----DGVDVLSVSIGNEIPLFSYI---D  275 (954)
Q Consensus       208 GTa~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~----dgvdVINlSlG~~~~~~~~~---~  275 (954)
                      || |++|++++.     +.||||+|+|+.+|++.     .++++++|.||++    .++.+||||||...... ..   +
T Consensus        54 GT-~VAGiIaa~~n~~G~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~~~-~~~p~~  126 (277)
T cd04843          54 GT-AVLGIIVAKDNGIGVTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLEMQTGGPNNGY-PPLPVE  126 (277)
T ss_pred             cc-hhheeeeeecCCCceeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEEccccCCCcCc-ccCcch
Confidence            99 999987763     58999999999999985     3456677777776    45778999999864111 11   1


Q ss_pred             cccHHHHHHHHHHHCCCEEEEeCCCCCCCCCccc-------------cCCCceEEEcccccCCCccceeecCCCeEEeee
Q 042478          276 QRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIV-------------NTAPWIITVGATTIDRAFPTAITLGNHQVLWGQ  342 (954)
Q Consensus       276 ~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~-------------~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~  342 (954)
                      ....+..++.+|.++|+++|+||||++.+.....             ...|++|+|||++.+.                 
T Consensus       127 ~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~-----------------  189 (277)
T cd04843         127 YEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTT-----------------  189 (277)
T ss_pred             hhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCC-----------------
Confidence            1134556788888999999999999986521111             1234677777643110                 


Q ss_pred             eeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC
Q 042478          343 SIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG  422 (954)
Q Consensus       343 s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~  422 (954)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (277)
T cd04843         190 --------------------------------------------------------------------------------  189 (277)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecC
Q 042478          423 LDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAY  502 (954)
Q Consensus       423 ~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~  502 (954)
                                                                   ...++.||++|+..        ||.|||++|++++
T Consensus       190 ---------------------------------------------~~~~~~fSn~G~~v--------di~APG~~i~s~~  216 (277)
T cd04843         190 ---------------------------------------------GHTRLAFSNYGSRV--------DVYGWGENVTTTG  216 (277)
T ss_pred             ---------------------------------------------CCccccccCCCCcc--------ceEcCCCCeEecC
Confidence                                                         11268899999987        9999999999998


Q ss_pred             CCCCC----CCCCceEeecCCCchhHHHHHHHHHHHh----h-CCCCCHHHHHHHHHhccc
Q 042478          503 PPIGS----KDIQGYALLSGTSMSCPHVAGIAALIKS----L-HRDWSPAAIRSALVTTAS  554 (954)
Q Consensus       503 ~~~~~----~~~~~y~~~SGTSMAaP~VAG~aALl~q----~-~P~~sp~~Iks~L~~TA~  554 (954)
                      +....    ...+.|..++|||||||||||++|||++    + +|+|+|+|||++|+.|++
T Consensus       217 ~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~  277 (277)
T cd04843         217 YGDLQDLGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT  277 (277)
T ss_pred             CCCcccccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence            76321    1123457899999999999999999975    3 499999999999999974

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins

Probab=100.00  E-value=9e-36  Score=317.85  Aligned_cols=221  Identities=37%  Similarity=0.510  Sum_probs=180.6

Q ss_pred             ceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhcccccccc-
Q 042478          141 GTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGL-  219 (954)
Q Consensus       141 GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G~-  219 (954)
                      ||+|||||+||+++||+|.+....      .|        .|.   .+..        ....+..|||| +++|++++. 
T Consensus         1 gv~V~iiDsGv~~~h~~l~~~~~~------~~--------~~~---~~~~--------~~~~~~~~HGT-~vA~ii~~~~   54 (229)
T cd07477           1 GVKVAVIDTGIDSSHPDLKLNIVG------GA--------NFT---GDDN--------NDYQDGNGHGT-HVAGIIAALD   54 (229)
T ss_pred             CCEEEEEcCCCCCCChhHhccccC------cc--------ccc---CCCC--------CCCCCCCCCHH-HHHHHHhccc
Confidence            799999999999999999754222      11        110   0000        11122237999 999987763 


Q ss_pred             ----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEE
Q 042478          220 ----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITV  294 (954)
Q Consensus       220 ----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~V  294 (954)
                          ..|+||+|+|+.+|+++..+ +...+++++++||++.|++|||+|||...     ..  ..+..++..+.++|+++
T Consensus        55 ~~~~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~-----~~--~~~~~~~~~a~~~gili  127 (229)
T cd07477          55 NGVGVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS-----DS--PALREAIKKAYAAGILV  127 (229)
T ss_pred             CCCccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC-----CC--HHHHHHHHHHHHCCCEE
Confidence                68999999999999998776 66789999999999999999999999864     12  45677888899999999


Q ss_pred             EEeCCCCCCCCCcc--ccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCcc
Q 042478          295 VSSAGNDGPVAQTI--VNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDC  372 (954)
Q Consensus       295 V~AAGN~G~~~~t~--~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C  372 (954)
                      |+||||+|......  ++..|++|+||+++.+                                                
T Consensus       128 v~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------------------------------  159 (229)
T cd07477         128 VAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------------------------------  159 (229)
T ss_pred             EEecCCCCCCCCCccCCCCCCCEEEEEeecCC------------------------------------------------
Confidence            99999999776654  7788999999985422                                                


Q ss_pred             CCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCC
Q 042478          373 RQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSP  452 (954)
Q Consensus       373 ~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~  452 (954)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (229)
T cd07477         160 --------------------------------------------------------------------------------  159 (229)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHH
Q 042478          453 IAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAAL  532 (954)
Q Consensus       453 ~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aAL  532 (954)
                                      +.++.||++|+..        |+.|||.+|+++++.      +.|..++|||||||+|||++||
T Consensus       160 ----------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~------~~~~~~~GTS~Aap~vag~~Al  209 (229)
T cd07477         160 ----------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN------NDYAYLSGTSMATPHVAGVAAL  209 (229)
T ss_pred             ----------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC------CCEEEEccHHHHHHHHHHHHHH
Confidence                            2345789999976        999999999999886      6899999999999999999999


Q ss_pred             HHhhCCCCCHHHHHHHHHhc
Q 042478          533 IKSLHRDWSPAAIRSALVTT  552 (954)
Q Consensus       533 l~q~~P~~sp~~Iks~L~~T  552 (954)
                      |+|++|+++|.+||++|++|
T Consensus       210 l~~~~~~~~~~~i~~~l~~t  229 (229)
T cd07477         210 VWSKRPELTNAQVRQALNKT  229 (229)
T ss_pred             HHHhCCCCCHHHHHHHHHhC
Confidence            99999999999999999976

This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug

>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12

Probab=100.00  E-value=8.6e-36  Score=330.65  Aligned_cols=262  Identities=28%  Similarity=0.344  Sum_probs=179.1

Q ss_pred             cCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhcc
Q 042478          134 TESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDE  213 (954)
Q Consensus       134 ~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~  213 (954)
                      ..+++|+||+|||||||||++||+|.+..+.              ..+|...             ....+.+|||| |++
T Consensus         2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~~--------------~~~~~~~-------------~~~~d~~gHGT-~VA   53 (297)
T cd07480           2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDIT--------------TKSFVGG-------------EDVQDGHGHGT-HCA   53 (297)
T ss_pred             CCCCCCCCCEEEEEcCCCCCCChhhcCCccc--------------CcccCCC-------------CCCCCCCCcHH-HHH
Confidence            3578999999999999999999999765332              0111100             00112237999 999


Q ss_pred             cccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCC----CCccCc---ccHH
Q 042478          214 GLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPL----FSYIDQ---RDSI  280 (954)
Q Consensus       214 G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~----~~~~~~---~d~~  280 (954)
                      |+++|.     ..||||+|+|+.+|++...+ +...++++||+||++.|++|||+|||...+.    + |...   ...+
T Consensus        54 giiag~~~~~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~-~~~~~~~~~~~  132 (297)
T cd07480          54 GTIFGRDVPGPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQG-WPPGLAFSRAL  132 (297)
T ss_pred             HHHhcccCCCcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCccccccc-CCCCchhHHHH
Confidence            987764     46999999999999997654 7777899999999999999999999985410    0 1110   0123


Q ss_pred             HHHHHHH---------------HHCCCEEEEeCCCCCCCCCccc-----cCCCceEEEcccccCCCccceeecCCCeEEe
Q 042478          281 AIGSFHA---------------IAKGITVVSSAGNDGPVAQTIV-----NTAPWIITVGATTIDRAFPTAITLGNHQVLW  340 (954)
Q Consensus       281 ~~a~~~A---------------~~~Gi~VV~AAGN~G~~~~t~~-----~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~  340 (954)
                      ......+               .++|++||+||||+|.......     ...+++++|++....                
T Consensus       133 ~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~----------------  196 (297)
T cd07480         133 EAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGAL----------------  196 (297)
T ss_pred             HHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCC----------------
Confidence            3233333               6799999999999986533221     112233333332110                


Q ss_pred             eeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCC
Q 042478          341 GQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHT  420 (954)
Q Consensus       341 g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~  420 (954)
                                                                                                      
T Consensus       197 --------------------------------------------------------------------------------  196 (297)
T cd07480         197 --------------------------------------------------------------------------------  196 (297)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEe
Q 042478          421 DGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILS  500 (954)
Q Consensus       421 ~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~s  500 (954)
                                                                      +....|+++.+.    ...+|||+|||++|++
T Consensus       197 ------------------------------------------------~~~~~~~~~~~~----~~~~~dv~ApG~~i~s  224 (297)
T cd07480         197 ------------------------------------------------GRTGNFSAVANF----SNGEVDIAAPGVDIVS  224 (297)
T ss_pred             ------------------------------------------------CCCCCccccCCC----CCCceEEEeCCCCeEe
Confidence                                                            111122222221    2347799999999999


Q ss_pred             cCCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCC
Q 042478          501 AYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGG  580 (954)
Q Consensus       501 a~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~Ga  580 (954)
                      +++.      +.|..++|||||||+|||++|||+|++|.+++.+++.+|+..........        ........++|+
T Consensus       225 ~~~~------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~--------~~~~~~~~~~g~  290 (297)
T cd07480         225 AAPG------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQ--------FAPGLDLPDRGV  290 (297)
T ss_pred             ecCC------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCC--------CCCCCChhhcCC
Confidence            9886      78999999999999999999999999999999888887774322110000        123455678999


Q ss_pred             CccCcc
Q 042478          581 GHVNPN  586 (954)
Q Consensus       581 G~vn~~  586 (954)
                      |++++.
T Consensus       291 G~~~~~  296 (297)
T cd07480         291 GLGLAP  296 (297)
T ss_pred             ceeecC
Confidence            999875

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7

Probab=100.00  E-value=4.7e-36  Score=322.90  Aligned_cols=218  Identities=21%  Similarity=0.206  Sum_probs=163.6

Q ss_pred             CCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhccccccc
Q 042478          139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAG  218 (954)
Q Consensus       139 G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G  218 (954)
                      +++|+|||||||||++||+|.++...    ...|...  .+. .     + +      ....+.+.+|||| |++|+.  
T Consensus         2 ~~~V~VaVIDsGvd~~hpdl~~~i~~----~~~~~~~--~~~-~-----~-~------~~~~~~d~~gHGT-~vAgiI--   59 (247)
T cd07491           2 LKRIKVALIDDGVDILDSDLQGKIIG----GKSFSPY--EGD-G-----N-K------VSPYYVSADGHGT-AMARMI--   59 (247)
T ss_pred             CCCCEEEEECCCcCCCchhhcccccc----CCCCCCC--CCC-c-----c-c------CCCCCCCCCCcHH-HHHHHH--
Confidence            78999999999999999999864222    0011100  000 0     0 0      0001122338999 999975  


Q ss_pred             cceeccCCCcEEEEEEecCCC-------CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCC
Q 042478          219 LARGGAPLAHLAIYKACWDIG-------CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKG  291 (954)
Q Consensus       219 ~~~GvAP~A~L~~yKv~~~~g-------~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~G  291 (954)
                        .|+||+|+|+.+|+++..+       ++..++++||+||+++|+||||||||...+.. .......+..++.+|.++|
T Consensus        60 --~gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~-~~~~~~~l~~ai~~A~~~G  136 (247)
T cd07491          60 --CRICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPED-NDNDINELENAIKEALDRG  136 (247)
T ss_pred             --HHHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccc-cccchHHHHHHHHHHHhCC
Confidence              5899999999999997653       45678999999999999999999999875210 0011267888999999999


Q ss_pred             CEEEEeCCCCCCCCC-cc--ccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCC
Q 042478          292 ITVVSSAGNDGPVAQ-TI--VNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDS  368 (954)
Q Consensus       292 i~VV~AAGN~G~~~~-t~--~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~  368 (954)
                      ++||+||||+|.... ++  +...|++|+|||++.+                                            
T Consensus       137 ilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~--------------------------------------------  172 (247)
T cd07491         137 ILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADED--------------------------------------------  172 (247)
T ss_pred             eEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCC--------------------------------------------
Confidence            999999999997754 33  3567899999985422                                            


Q ss_pred             CCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhh
Q 042478          369 ANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRR  448 (954)
Q Consensus       369 ~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s  448 (954)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (247)
T cd07491         173 --------------------------------------------------------------------------------  172 (247)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHH
Q 042478          449 ARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAG  528 (954)
Q Consensus       449 ~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG  528 (954)
                                          +.++.||++|+..        |++|||++|+++++..   ..+.|..++|||||||||||
T Consensus       173 --------------------g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~---~~~~~~~~sGTS~Atp~vaG  221 (247)
T cd07491         173 --------------------GGADAPVGDEDRV--------DYILPGENVEARDRPP---LSNSFVTHTGSSVATALAAG  221 (247)
T ss_pred             --------------------CCCccccCCCCcc--------eEEeCCCceecCCcCC---CCCCeeeeccHHHHHHHHHH
Confidence                                2356789999987        9999999999997621   12689999999999999999


Q ss_pred             HHHHHHhh
Q 042478          529 IAALIKSL  536 (954)
Q Consensus       529 ~aALl~q~  536 (954)
                      ++||+++.
T Consensus       222 vaAL~l~~  229 (247)
T cd07491         222 LAALILYC  229 (247)
T ss_pred             HHHHHHHH
Confidence            99999985

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification

Probab=100.00  E-value=2.5e-36  Score=331.98  Aligned_cols=263  Identities=37%  Similarity=0.494  Sum_probs=197.9

Q ss_pred             EEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccC------CCCCCCchhhhccccc
Q 042478          143 IIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKG------IMDMINASTNTDEGLA  216 (954)
Q Consensus       143 vVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~------~~~~~G~GTa~v~G~a  216 (954)
                      +|||||||||++||+|....+.                       ..++.+.+.|.++      ..+.+|||| +++|++
T Consensus         1 ~V~viDtGid~~h~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~HGT-~va~ii   56 (282)
T PF00082_consen    1 KVAVIDTGIDPNHPDFSSGNFI-----------------------WSKVPGGYNFVDGNPNPSPSDDDNGHGT-HVAGII   56 (282)
T ss_dssp             EEEEEESBBTTTSTTTTCTTEE-----------------------EEEEEEEEETTTTBSTTTSSSTSSSHHH-HHHHHH
T ss_pred             CEEEEcCCcCCCChhHccCCcc-----------------------cccccceeeccCCCCCcCccccCCCccc-hhhhhc
Confidence            6999999999999999722111                       0111122222221      112227999 999987


Q ss_pred             cccc-------eeccCCCcEEEEEEecCCCCChHHHHHHHHHHh-cCCccEEEecccCC--CCCCCccCcccHHHHHHHH
Q 042478          217 AGLA-------RGGAPLAHLAIYKACWDIGCTDADVLKAFDKAI-HDGVDVLSVSIGNE--IPLFSYIDQRDSIAIGSFH  286 (954)
Q Consensus       217 ~G~~-------~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai-~dgvdVINlSlG~~--~~~~~~~~~~d~~~~a~~~  286 (954)
                      .+..       .|+||+|+|+.+|++...++...+++++|++++ +++++|||+|||..  .... ...  +.+..++..
T Consensus        57 ~~~~~~~~~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~-~~~--~~~~~~~~~  133 (282)
T PF00082_consen   57 AGNGGNNGPGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDP-SYS--DILEEAIDY  133 (282)
T ss_dssp             HHTTSSSSSSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHS-HHH--HHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccc-ccc--ccccccccc
Confidence            7765       999999999999998777777888999999999 89999999999883  2111 122  445667778


Q ss_pred             HHHCCCEEEEeCCCCCCCCCc---cccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccc
Q 042478          287 AIAKGITVVSSAGNDGPVAQT---IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIA  363 (954)
Q Consensus       287 A~~~Gi~VV~AAGN~G~~~~t---~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~  363 (954)
                      +.++|+++|+||||+|+....   .+...+++|+||+.+.+                                       
T Consensus       134 ~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~---------------------------------------  174 (282)
T PF00082_consen  134 AEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN---------------------------------------  174 (282)
T ss_dssp             HHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT---------------------------------------
T ss_pred             ccccCcceeeccccccccccccccccccccccccccccccc---------------------------------------
Confidence            889999999999999876543   44556888999874311                                       


Q ss_pred             cCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHH
Q 042478          364 FDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQIL  443 (954)
Q Consensus       364 ~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~  443 (954)
                                                                                                      
T Consensus       175 --------------------------------------------------------------------------------  174 (282)
T PF00082_consen  175 --------------------------------------------------------------------------------  174 (282)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchh
Q 042478          444 SYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSC  523 (954)
Q Consensus       444 ~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAa  523 (954)
                                               +.++.||++|+.. .++++||||+|||.+|+++++....   ..|..++||||||
T Consensus       175 -------------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~~---~~~~~~~GTS~Aa  225 (282)
T PF00082_consen  175 -------------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSDR---GSYTSFSGTSFAA  225 (282)
T ss_dssp             -------------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTES---EEEEEEESHHHHH
T ss_pred             -------------------------ccccccccccccc-ccccccccccccccccccccccccc---ccccccCcCCchH
Confidence                                     2357889997653 2789999999999999998876210   3588899999999


Q ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478          524 PHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN  590 (954)
Q Consensus       524 P~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~  590 (954)
                      |+|||++|||+|++|+|++.+||.+|++||...+..          ........||+|+||+.+|++
T Consensus       226 p~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~----------~~~~~~~~~G~G~in~~~a~~  282 (282)
T PF00082_consen  226 PVVAGAAALLLSKYPNLTPAEIKALLINTADDLGST----------NGEGYDNSYGWGLINAEKALN  282 (282)
T ss_dssp             HHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSET----------TSSSSHHHHTTSBE-HHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcC----------CCCCCCCCccCChhCHHHHhC
Confidence            999999999999999999999999999999976511          123445678999999999874

; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....

>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8

Probab=100.00  E-value=7.5e-35  Score=309.61  Aligned_cols=220  Identities=22%  Similarity=0.215  Sum_probs=170.7

Q ss_pred             ceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCC-CCCCCccccceeccccCCCCCCCchhhhcccccccc
Q 042478          141 GTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFN-SSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGL  219 (954)
Q Consensus       141 GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~-~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G~  219 (954)
                      ||+|||||||||++||+|.+....       ++       .+. ...|+        -.....+.+|||| |++|+.+  
T Consensus         1 gV~VaViDsGi~~~h~~l~~~~~~-------~~-------~~~~~~~~~--------~~~~~~d~~gHGT-~vAgiia--   55 (222)
T cd07492           1 GVRVAVIDSGVDTDHPDLGNLALD-------GE-------VTIDLEIIV--------VSAEGGDKDGHGT-ACAGIIK--   55 (222)
T ss_pred             CCEEEEEeCCCCCCChhhhccccc-------cc-------ccccccccc--------CCCCCCCCCCcHH-HHHHHHH--
Confidence            799999999999999999765322       00       000 00000        0011112238999 9999864  


Q ss_pred             ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeC
Q 042478          220 ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSA  298 (954)
Q Consensus       220 ~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AA  298 (954)
                        +.+|+++|+.+|+++..+ +..+++++||+||+++|++|||||||...  . ...  ..+..++.++.++|+++|+||
T Consensus        56 --~~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~--~-~~~--~~~~~~~~~a~~~g~l~V~aa  128 (222)
T cd07492          56 --KYAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPG--D-RDF--PLLKELLEYAYKAGGIIVAAA  128 (222)
T ss_pred             --ccCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--C-CcC--HHHHHHHHHHHHCCCEEEEEC
Confidence              567999999999998776 88889999999999999999999999875  1 222  567788889999999999999


Q ss_pred             CCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCC
Q 042478          299 GNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLN  378 (954)
Q Consensus       299 GN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~  378 (954)
                      ||++.... .++..|.+|+|++...++                                                     
T Consensus       129 gN~~~~~~-~Pa~~~~vi~V~~~~~~~-----------------------------------------------------  154 (222)
T cd07492         129 PNNNDIGT-PPASFPNVIGVKSDTADD-----------------------------------------------------  154 (222)
T ss_pred             CCCCCCCC-CCccCCceEEEEecCCCC-----------------------------------------------------
Confidence            99986543 366778899998743111                                                     


Q ss_pred             cccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCC
Q 042478          379 ATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSS  458 (954)
Q Consensus       379 ~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~  458 (954)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (222)
T cd07492         155 --------------------------------------------------------------------------------  154 (222)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhCC
Q 042478          459 PETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHR  538 (954)
Q Consensus       459 ~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P  538 (954)
                                 .   .+.+++        ++|+.|||.+|+++++.      +.|..++|||||||+|||++|||+|++|
T Consensus       155 -----------~---~~~~~~--------~~~~~apg~~i~~~~~~------~~~~~~~GTS~Aap~vaG~~All~~~~p  206 (222)
T cd07492         155 -----------P---KSFWYI--------YVEFSADGVDIIAPAPH------GRYLTVSGNSFAAPHVTGMVALLLSEKP  206 (222)
T ss_pred             -----------C---cccccC--------CceEEeCCCCeEeecCC------CCEEEeccHHHHHHHHHHHHHHHHHhCC
Confidence                       0   011233        34999999999999886      6899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhccc
Q 042478          539 DWSPAAIRSALVTTAS  554 (954)
Q Consensus       539 ~~sp~~Iks~L~~TA~  554 (954)
                      +|+++|||++|++||+
T Consensus       207 ~l~~~~v~~~L~~tA~  222 (222)
T cd07492         207 DIDANDLKRLLQRLAV  222 (222)
T ss_pred             CCCHHHHHHHHHHhcC
Confidence            9999999999999985

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases

Probab=100.00  E-value=1.8e-34  Score=319.54  Aligned_cols=151  Identities=25%  Similarity=0.337  Sum_probs=101.7

Q ss_pred             ceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCC-CCCCccccceeccccCCCCCCCchhhhccccccc-
Q 042478          141 GTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNS-SNCNRKLIGARWFIKGIMDMINASTNTDEGLAAG-  218 (954)
Q Consensus       141 GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~-~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G-  218 (954)
                      .|+|||||||||++||+|.+....   .-..+    .....+.. ..|.   .|.   .++..+..|||| |++|++++ 
T Consensus         1 ~V~VaviDtGi~~~hp~l~~~~~~---~~~~~----~~~~~~~~~~~~~---~~~---~~~~~d~~gHGT-~vAgiia~~   66 (294)
T cd07482           1 KVTVAVIDSGIDPDHPDLKNSISS---YSKNL----VPKGGYDGKEAGE---TGD---INDIVDKLGHGT-AVAGQIAAN   66 (294)
T ss_pred             CcEEEEEeCCCCCCChhHhhcccc---ccccc----ccCCCcCCccccc---cCC---CCcCCCCCCcHh-HHHHHHhcC
Confidence            389999999999999999854221   00000    00000000 0000   000   011112238999 99998765 


Q ss_pred             -cceeccCCCcEEEEEEecCCCC-ChHHHHHHHHHHhcCCccEEEecccCCCCCCC-c---cCcccHHHHHHHHHHHCCC
Q 042478          219 -LARGGAPLAHLAIYKACWDIGC-TDADVLKAFDKAIHDGVDVLSVSIGNEIPLFS-Y---IDQRDSIAIGSFHAIAKGI  292 (954)
Q Consensus       219 -~~~GvAP~A~L~~yKv~~~~g~-~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~-~---~~~~d~~~~a~~~A~~~Gi  292 (954)
                       ...||||+|+|+.+|+++..+. ...++++||+||+++|++|||+|||....... .   ....+.+..++..+.++|+
T Consensus        67 ~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~  146 (294)
T cd07482          67 GNIKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGS  146 (294)
T ss_pred             CCCceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHHHHHHHHHCCC
Confidence             3579999999999999987764 88899999999999999999999998642110 0   0001346667778889999


Q ss_pred             EEEEeCCCCCCCC
Q 042478          293 TVVSSAGNDGPVA  305 (954)
Q Consensus       293 ~VV~AAGN~G~~~  305 (954)
                      +||+||||+|...
T Consensus       147 lvv~AAGN~g~~~  159 (294)
T cd07482         147 IVVAAAGNDGLDV  159 (294)
T ss_pred             EEEEeCCCCCccc
Confidence            9999999999643

Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h

>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases

Probab=100.00  E-value=2.2e-34  Score=319.50  Aligned_cols=248  Identities=21%  Similarity=0.150  Sum_probs=179.2

Q ss_pred             CccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCc
Q 042478          128 SSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINA  207 (954)
Q Consensus       128 ~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~  207 (954)
                      ++..+|..+++|+||+|||||||||+.||+|.+....    ...|+-......               .+ ....+.+||
T Consensus        27 ~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~----~~~~~~~~~~~~---------------~~-~~~~~~~gH   86 (297)
T cd04059          27 NVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP----EASYDFNDNDPD---------------PT-PRYDDDNSH   86 (297)
T ss_pred             ccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc----cccccccCCCCC---------------CC-Ccccccccc
Confidence            4778999999999999999999999999999765321    011111000000               00 000122389


Q ss_pred             hhhhcccccccc------ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhcCCccEEEecccCCCCCCCccC-cccHH
Q 042478          208 STNTDEGLAAGL------ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYID-QRDSI  280 (954)
Q Consensus       208 GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~-~~d~~  280 (954)
                      || |++|+++|.      ..||||+|+|+.+|++... .....+..++.++.+ .++|||+|||...... +.+ .....
T Consensus        87 GT-~vAgiiag~~~~~~~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~~~-~~~~~~~~~  162 (297)
T cd04059          87 GT-RCAGEIAAVGNNGICGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNSWGPDDDGK-TVDGPGPLA  162 (297)
T ss_pred             Cc-ceeeEEEeecCCCcccccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECCCCCCCCCC-ccCCCcHHH
Confidence            99 999988764      5899999999999999754 344555666666654 4599999999864211 111 11344


Q ss_pred             HHHHHHHHH-----CCCEEEEeCCCCCCCCCc----cccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCC
Q 042478          281 AIGSFHAIA-----KGITVVSSAGNDGPVAQT----IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSH  351 (954)
Q Consensus       281 ~~a~~~A~~-----~Gi~VV~AAGN~G~~~~t----~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~  351 (954)
                      ..++.++..     +|++||+||||+|.....    .....|++|+|||++.                            
T Consensus       163 ~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~----------------------------  214 (297)
T cd04059         163 QRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA----------------------------  214 (297)
T ss_pred             HHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC----------------------------
Confidence            556666664     699999999999973222    1245678999987532                            


Q ss_pred             ceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccce
Q 042478          352 GFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPC  431 (954)
Q Consensus       352 ~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~  431 (954)
                                                                                                      
T Consensus       215 --------------------------------------------------------------------------------  214 (297)
T cd04059         215 --------------------------------------------------------------------------------  214 (297)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCc-------eEecCCC
Q 042478          432 IKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVD-------ILSAYPP  504 (954)
Q Consensus       432 ~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~-------I~sa~~~  504 (954)
                                                          .+.++.||++|+..        ++.|||..       |+++...
T Consensus       215 ------------------------------------~g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~~~~~~  250 (297)
T cd04059         215 ------------------------------------NGVRASYSEVGSSV--------LASAPSGGSGNPEASIVTTDLG  250 (297)
T ss_pred             ------------------------------------CCCCcCCCCCCCcE--------EEEecCCCCCCCCCceEeCCCC
Confidence                                                13457899999987        89999987       7776654


Q ss_pred             CCCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478          505 IGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTAS  554 (954)
Q Consensus       505 ~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~  554 (954)
                      .   ....|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus       251 ~---~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~  297 (297)
T cd04059         251 G---NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR  297 (297)
T ss_pred             C---CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence            1   0156789999999999999999999999999999999999999985

Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.

>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases

Probab=100.00  E-value=4.3e-34  Score=311.25  Aligned_cols=240  Identities=28%  Similarity=0.317  Sum_probs=181.0

Q ss_pred             CCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhcccccc
Q 042478          138 MGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAA  217 (954)
Q Consensus       138 ~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~  217 (954)
                      +|+||+|||||+||+++||+|.+....  .    +.....         ++.       ......+.+|||| +++|+++
T Consensus         1 tG~gv~VaiiDsG~~~~h~~l~~~~~~--~----~~~~~~---------~~~-------~~~~~~~~~~HGT-~vagiia   57 (267)
T cd04848           1 TGAGVKVGVIDSGIDLSHPEFAGRVSE--A----SYYVAV---------NDA-------GYASNGDGDSHGT-HVAGVIA   57 (267)
T ss_pred             CCCceEEEEEeCCCCCCCccccCcccc--c----cccccc---------ccc-------cCCCCCCCCChHH-HHHHHHh
Confidence            699999999999999999999865432  0    000000         000       0011122237999 9999888


Q ss_pred             cc-----ceeccCCCcEEEEEEecCCC--CChHHHHHHHHHHhcCCccEEEecccCCCCCCCcc---------CcccHHH
Q 042478          218 GL-----ARGGAPLAHLAIYKACWDIG--CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYI---------DQRDSIA  281 (954)
Q Consensus       218 G~-----~~GvAP~A~L~~yKv~~~~g--~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~---------~~~d~~~  281 (954)
                      |.     ..|+||+|+|+.+|+++..+  +....+.++++++++.+++|||+|||...... ..         .....+.
T Consensus        58 g~~~~~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~-~~~~~~~~~~~~~~~~~~  136 (267)
T cd04848          58 AARDGGGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAID-TVSTTYKGSAATQGNTLL  136 (267)
T ss_pred             cCcCCCCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCccc-ccccchhhhccccchHHH
Confidence            76     67999999999999998764  66778899999999999999999999875211 10         1125677


Q ss_pred             HHHHHHHHCCCEEEEeCCCCCCCCCcc---------ccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCc
Q 042478          282 IGSFHAIAKGITVVSSAGNDGPVAQTI---------VNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHG  352 (954)
Q Consensus       282 ~a~~~A~~~Gi~VV~AAGN~G~~~~t~---------~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~  352 (954)
                      ..+..+.++|+++|+||||+|......         +...+++|+||+.+.+.                           
T Consensus       137 ~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~---------------------------  189 (267)
T cd04848         137 AALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG---------------------------  189 (267)
T ss_pred             HHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC---------------------------
Confidence            778888999999999999998654332         23457888888754321                           


Q ss_pred             eeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceE
Q 042478          353 FTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCI  432 (954)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~  432 (954)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (267)
T cd04848         190 --------------------------------------------------------------------------------  189 (267)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccc--cCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCC
Q 042478          433 KVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVAS--FSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDI  510 (954)
Q Consensus       433 ~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~--FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~  510 (954)
                                                           ....  ||++|+..     -.+++.|||.+|+++.+..    .
T Consensus       190 -------------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~----~  223 (267)
T cd04848         190 -------------------------------------TIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDG----G  223 (267)
T ss_pred             -------------------------------------Ccccccccccchhh-----hhheeecCcCceeecccCC----C
Confidence                                                 1122  47887653     2347999999999998731    1


Q ss_pred             CceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478          511 QGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTAS  554 (954)
Q Consensus       511 ~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~  554 (954)
                      ..|..++|||||||+|||++||++|++|++++++||++|++||+
T Consensus       224 ~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~  267 (267)
T cd04848         224 NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT  267 (267)
T ss_pred             CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence            67899999999999999999999999999999999999999985

Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.

>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.4e-33  Score=307.24  Aligned_cols=353  Identities=26%  Similarity=0.345  Sum_probs=263.7

Q ss_pred             CceEEEEEcCCCCCCchhchhhHHHHHHHHhCcccc------ccccEEEEEccceeEEEEEcC-----HHHHHHHHcCCC
Q 042478           32 SNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEA------AKHSILYSYKHGFSGFAARLT-----KTQAEKIAELPG  100 (954)
Q Consensus        32 ~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~------~~~~i~~~y~~~~nGfs~~l~-----~~~~~~L~~~p~  100 (954)
                      +..|||+|+.-.      ....|+..+++.+....-      .+...-..|-..|.-+-++=.     .-+++.|+.+|.
T Consensus        49 e~EyIv~F~~y~------~Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~  122 (1033)
T KOG4266|consen   49 ESEYIVRFKQYK------PAKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPD  122 (1033)
T ss_pred             cceeEEEecccc------cchHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCC
Confidence            456999999752      235678888887753221      112223345555554444433     235789999999


Q ss_pred             eeEEEeCceeeccc------------cc---------------------ccccc-cccccc-----CccccccCCCCCCc
Q 042478          101 VVQVIPNGILKLHT------------TR---------------------SWEFM-GLHYYQ-----SSKNLSTESNMGEG  141 (954)
Q Consensus       101 V~~V~~~~~~~l~t------------~~---------------------s~~~~-gl~~~~-----~~~~~w~~~~~G~G  141 (954)
                      |+.|.|-+.+..-.            ++                     .|+-. -....+     +++.+|..|++|++
T Consensus       123 vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~  202 (1033)
T KOG4266|consen  123 VKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAK  202 (1033)
T ss_pred             ceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCc
Confidence            99999987764210            00                     00000 000000     57889999999999


Q ss_pred             eEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCC-Cchhhhcccccccc-
Q 042478          142 TIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMI-NASTNTDEGLAAGL-  219 (954)
Q Consensus       142 VvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~-G~GTa~v~G~a~G~-  219 (954)
                      |+|||.|||+.-+||-|+.--     ....|....                        ..++. |||| -|+|..+|. 
T Consensus       203 VkvAiFDTGl~~~HPHFrnvK-----ERTNWTNE~------------------------tLdD~lgHGT-FVAGvia~~~  252 (1033)
T KOG4266|consen  203 VKVAIFDTGLRADHPHFRNVK-----ERTNWTNED------------------------TLDDNLGHGT-FVAGVIAGRN  252 (1033)
T ss_pred             eEEEEeecccccCCccccchh-----hhcCCcCcc------------------------ccccCcccce-eEeeeeccch
Confidence            999999999999999997321     112332111                        11111 7999 999988875 


Q ss_pred             -ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEe
Q 042478          220 -ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSS  297 (954)
Q Consensus       220 -~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~A  297 (954)
                       ..|.||+++|+++|||-+.- .+++..++||+|||...+||+|+|+|++.    |-+  .|+-.-+.....+.|++|.|
T Consensus       253 ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD----fmD--~PFVeKVwEltAnNvIMvSA  326 (1033)
T KOG4266|consen  253 ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPD----FMD--LPFVEKVWELTANNVIMVSA  326 (1033)
T ss_pred             hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCcc----ccc--chHHHHHHhhccCcEEEEEe
Confidence             78999999999999997765 78899999999999999999999999986    888  89888888899999999999


Q ss_pred             CCCCCCCCCccccCCC--ceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCC
Q 042478          298 AGNDGPVAQTIVNTAP--WIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQG  375 (954)
Q Consensus       298 AGN~G~~~~t~~~~ap--~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~  375 (954)
                      +||+||-.+|..|++.  .||.||.                                                       
T Consensus       327 iGNDGPLYGTLNNPaDQsDViGVGG-------------------------------------------------------  351 (1033)
T KOG4266|consen  327 IGNDGPLYGTLNNPADQSDVIGVGG-------------------------------------------------------  351 (1033)
T ss_pred             cCCCCcceeecCCcccccceeeecc-------------------------------------------------------
Confidence            9999999988887652  3444442                                                       


Q ss_pred             CCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccc
Q 042478          376 SLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAK  455 (954)
Q Consensus       376 ~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~  455 (954)
                                                                                                      
T Consensus       352 --------------------------------------------------------------------------------  351 (1033)
T KOG4266|consen  352 --------------------------------------------------------------------------------  351 (1033)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCceeecccCCCcccccCCCCCCCC----CCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHH
Q 042478          456 LSSPETVIGDLVSPRVASFSSRGPNSM----SPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA  531 (954)
Q Consensus       456 i~~~~~~~~~~~~~~~a~FSS~GP~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aA  531 (954)
                               .+-.+.+|.|||||=+..    .-+++||||++-|.+|...-..      .+...+||||.|+|.|||+++
T Consensus       352 ---------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~------~GCr~LSGTSVaSPVVAGav~  416 (1033)
T KOG4266|consen  352 ---------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS------TGCRSLSGTSVASPVVAGAVC  416 (1033)
T ss_pred             ---------ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc------ccchhccCCcccchhhhceee
Confidence                     223467899999997643    3578999999999999887665      678999999999999999999


Q ss_pred             HHHh----hCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478          532 LIKS----LHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN  590 (954)
Q Consensus       532 Ll~q----~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~  590 (954)
                      ||-+    +.--++|+.+|.+|...|..+...              .-|+||+|++|..++.+
T Consensus       417 LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~--------------NMfEQGaGkldLL~syq  465 (1033)
T KOG4266|consen  417 LLVSVEAQKKDLLNPASMKQALIEGAAKLPGP--------------NMFEQGAGKLDLLESYQ  465 (1033)
T ss_pred             eEeeeheehhhccCHHHHHHHHHhHHhhCCCC--------------chhhccCcchhHHHHHH
Confidence            9977    233468999999999999977432              24789999999988876

>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.2e-30  Score=297.57  Aligned_cols=230  Identities=31%  Similarity=0.399  Sum_probs=174.9

Q ss_pred             chhhhcccccccc------ceeccCCCcEEEEEEecCC-C--CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcc
Q 042478          207 ASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDI-G--CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQR  277 (954)
Q Consensus       207 ~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~-g--~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~  277 (954)
                      ||| ||+||++|.      ..|+||+|+|+..++.+.. |  -+...+.+|+..+++..+||||||+|-..  + |.+..
T Consensus       312 HGT-HVAgIa~anhpe~p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a--~-~pn~G  387 (1304)
T KOG1114|consen  312 HGT-HVAGIAAANHPETPELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA--H-LPNSG  387 (1304)
T ss_pred             Ccc-eehhhhccCCCCCccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC--C-CCCcc
Confidence            999 999999986      5899999999999998654 3  45567899999999999999999999876  4 44433


Q ss_pred             cHHHHHHHHHHHCCCEEEEeCCCCCCCCCcccc---CCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCcee
Q 042478          278 DSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVN---TAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFT  354 (954)
Q Consensus       278 d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~---~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~  354 (954)
                      ..++.+-..+-++||++|+||||+||...|++.   ..-.+|.|||.-...-                       ....|
T Consensus       388 RviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~m-----------------------m~a~y  444 (1304)
T KOG1114|consen  388 RVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGM-----------------------MQAEY  444 (1304)
T ss_pred             hHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHH-----------------------HHhhh
Confidence            445544444448999999999999998777764   2346777776211000                       00000


Q ss_pred             eeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEe
Q 042478          355 GLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKV  434 (954)
Q Consensus       355 ~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i  434 (954)
                      .+.                                                                             
T Consensus       445 ~~~-----------------------------------------------------------------------------  447 (1304)
T KOG1114|consen  445 SVR-----------------------------------------------------------------------------  447 (1304)
T ss_pred             hhh-----------------------------------------------------------------------------
Confidence            000                                                                             


Q ss_pred             ehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceE
Q 042478          435 NYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYA  514 (954)
Q Consensus       435 ~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~  514 (954)
                                                    .........+|||||+.  ||.+--.|.|||+.|.+. |.+.   -..-.
T Consensus       448 ------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~t---lq~~q  491 (1304)
T KOG1114|consen  448 ------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQYT---LQNSQ  491 (1304)
T ss_pred             ------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCC-chhh---hhhhh
Confidence                                          01124478899999998  899999999999988764 2211   14567


Q ss_pred             eecCCCchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478          515 LLSGTSMSCPHVAGIAALIKS----LHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN  590 (954)
Q Consensus       515 ~~SGTSMAaP~VAG~aALl~q----~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~  590 (954)
                      .|+|||||+|+++|.+|||++    .+-.|||..||.+|++||++++.              -.+|.+|.|++++.+|.+
T Consensus       492 LMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~--------------id~faqG~GmlqVdkAyE  557 (1304)
T KOG1114|consen  492 LMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGD--------------IDSFAQGQGMLQVDKAYE  557 (1304)
T ss_pred             hhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCc--------------cchhccCcceeehhHHHH
Confidence            899999999999999999865    56789999999999999997642              247899999999999876

>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families

Probab=99.96  E-value=1.9e-27  Score=253.29  Aligned_cols=229  Identities=35%  Similarity=0.403  Sum_probs=171.8

Q ss_pred             eEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhccccccccc-
Q 042478          142 TIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGLA-  220 (954)
Q Consensus       142 VvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G~~-  220 (954)
                      |+|||||+||+++|++|......   ....++        +..  +....       ....+..|||| +++|++.+.. 
T Consensus         1 v~VaiiD~G~~~~~~~~~~~~~~---~~~~~~--------~~~--~~~~~-------~~~~~~~~HGt-~va~~i~~~~~   59 (241)
T cd00306           1 VTVAVIDTGVDPDHPDLDGLFGG---GDGGND--------DDD--NENGP-------TDPDDGNGHGT-HVAGIIAASAN   59 (241)
T ss_pred             CEEEEEeCCCCCCCcchhccccC---cccccc--------ccc--CcCCC-------CCCCCCCCcHH-HHHHHHhcCCC
Confidence            68999999999999987211000   000000        000  00000       11112227999 8999888775 


Q ss_pred             ----eeccCCCcEEEEEEecCCC-CChHHHHHHHHHHh-cCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHC-CCE
Q 042478          221 ----RGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAI-HDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAK-GIT  293 (954)
Q Consensus       221 ----~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai-~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~-Gi~  293 (954)
                          .|+||+++|+.+|+....+ .....+++|+++++ +.+++|||+|||...  . ...  ..+...+..+.++ |++
T Consensus        60 ~~~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~--~-~~~--~~~~~~~~~~~~~~~~i  134 (241)
T cd00306          60 NGGGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPG--S-PPS--SALSEAIDYALAKLGVL  134 (241)
T ss_pred             CCCCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCC--C-CCC--HHHHHHHHHHHHhcCeE
Confidence                8999999999999997765 67788999999999 999999999999975  1 112  5677788888888 999


Q ss_pred             EEEeCCCCCCCCC---ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCC
Q 042478          294 VVSSAGNDGPVAQ---TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSAN  370 (954)
Q Consensus       294 VV~AAGN~G~~~~---t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~  370 (954)
                      +|+||||++....   ..++..|++|+||+.+.+..                                            
T Consensus       135 ~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------------------------------------  170 (241)
T cd00306         135 VVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGT--------------------------------------------  170 (241)
T ss_pred             EEEecCCCCCCCCCCccCCccCCceEEEEecCcCCC--------------------------------------------
Confidence            9999999998766   46778899999998653211                                            


Q ss_pred             ccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcC
Q 042478          371 DCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRAR  450 (954)
Q Consensus       371 ~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~  450 (954)
                                                                                                      
T Consensus       171 --------------------------------------------------------------------------------  170 (241)
T cd00306         171 --------------------------------------------------------------------------------  170 (241)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccccCCCceeecccCCCcc-cccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHH
Q 042478          451 SPIAKLSSPETVIGDLVSPRV-ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI  529 (954)
Q Consensus       451 ~~~~~i~~~~~~~~~~~~~~~-a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~  529 (954)
                                          . ..++++|+        |||+.|||.++......    ....|..++|||||||+|||+
T Consensus       171 --------------------~~~~~~~~~~--------~~~~~apg~~~~~~~~~----~~~~~~~~~GTS~Aap~vaG~  218 (241)
T cd00306         171 --------------------PASPSSNGGA--------GVDIAAPGGDILSSPTT----GGGGYATLSGTSMAAPIVAGV  218 (241)
T ss_pred             --------------------ccCCcCCCCC--------CceEEeCcCCccCcccC----CCCCeEeeccHHHHHHHHHHH
Confidence                                1 13444444        56999999999885111    136899999999999999999


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHhc
Q 042478          530 AALIKSLHRDWSPAAIRSALVTT  552 (954)
Q Consensus       530 aALl~q~~P~~sp~~Iks~L~~T  552 (954)
                      +||++|++|++++.++|++|++|
T Consensus       219 ~Al~~~~~~~~~~~~~~~~l~~t  241 (241)
T cd00306         219 AALLLSANPDLTPAQVKAALLST  241 (241)
T ss_pred             HHHHHHHCCCCCHHHHHHHHhhC
Confidence            99999999999999999999875

Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav

>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2

Probab=99.95  E-value=5.1e-28  Score=259.87  Aligned_cols=192  Identities=23%  Similarity=0.203  Sum_probs=139.2

Q ss_pred             CchhhhccccccccceeccCCCcEEEEEEecCCCCChHHHHHHHHHH--hcCCccEEEecccCCCCCCCc---cCcccHH
Q 042478          206 NASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKA--IHDGVDVLSVSIGNEIPLFSY---IDQRDSI  280 (954)
Q Consensus       206 G~GTa~v~G~a~G~~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~A--i~dgvdVINlSlG~~~~~~~~---~~~~d~~  280 (954)
                      |||| ||+|+++|. .|++|+|+|+..++..   .....+.++++|+  .+.+++|||||||+..... .   ....+.+
T Consensus        38 ~HGT-hVAgiiag~-~~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~G~~~~~~-~~~~~~~~~~l  111 (247)
T cd07488          38 DHAT-LVASIMGGR-DGGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSYGEGLKRD-PRAVLYGYALL  111 (247)
T ss_pred             CHHH-HHHHHHHhc-cCCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCCccCCCCC-ccccccccchH
Confidence            8999 999998886 5788999998766532   2334467788888  6789999999999875221 0   0111456


Q ss_pred             HHHHHHHHHC-CCEEEEeCCCCCCCCC-----ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCcee
Q 042478          281 AIGSFHAIAK-GITVVSSAGNDGPVAQ-----TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFT  354 (954)
Q Consensus       281 ~~a~~~A~~~-Gi~VV~AAGN~G~~~~-----t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~  354 (954)
                      ..+++.+.++ |+++|+||||+|.+..     ..+..++++|+|||++....                            
T Consensus       112 ~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~----------------------------  163 (247)
T cd07488         112 SLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD----------------------------  163 (247)
T ss_pred             HHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC----------------------------
Confidence            7778877766 9999999999997532     23456788999998643211                            


Q ss_pred             eeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEe
Q 042478          355 GLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKV  434 (954)
Q Consensus       355 ~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i  434 (954)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (247)
T cd07488         164 --------------------------------------------------------------------------------  163 (247)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceE
Q 042478          435 NYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYA  514 (954)
Q Consensus       435 ~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~  514 (954)
                                                       ....+.||++|-....++..||||+|||++|++  +.      +.|.
T Consensus       164 ---------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG~~i~s--~~------~~~~  202 (247)
T cd07488         164 ---------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPGSNYNL--PD------GKDD  202 (247)
T ss_pred             ---------------------------------cceecccccccCCCCCCCCceeEEEEeeeeEEC--CC------Ccee
Confidence                                             001234555432222267789999999999999  33      6789


Q ss_pred             eecCCCchhHHHHHHHHHHHhhCCCCC------HHHHHHHHHhc
Q 042478          515 LLSGTSMSCPHVAGIAALIKSLHRDWS------PAAIRSALVTT  552 (954)
Q Consensus       515 ~~SGTSMAaP~VAG~aALl~q~~P~~s------p~~Iks~L~~T  552 (954)
                      .++|||||||||||++|||++++|++.      --+++.+|+.+
T Consensus       203 ~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~  246 (247)
T cd07488         203 FVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS  246 (247)
T ss_pred             eecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence            999999999999999999999987665      45567777665

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>PF00298 Ribosomal_L11: Ribosomal protein L11, RNA binding domain; InterPro: IPR020783 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.90  E-value=5e-24  Score=180.62  Aligned_cols=69  Identities=54%  Similarity=0.782  Sum_probs=68.0

Q ss_pred             eCCCHHHHHHHHhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEE
Q 042478          874 KTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI  942 (954)
Q Consensus       874 ~~p~~s~li~k~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v  942 (954)
                      |+||+||||+|++|+++|+++|+++++|+||++||||||++|++|+++.+|+++||+|+||||||||+|
T Consensus         1 K~Pp~s~llkkaagi~kGs~~p~~~~vG~it~~~i~eIAk~K~~d~~~~~l~~~~k~v~Gta~SmGi~V   69 (69)
T PF00298_consen    1 KTPPTSWLLKKAAGIKKGSSKPGKEKVGTITLKQIYEIAKIKQKDLNAKSLESAVKSVIGTARSMGIKV   69 (69)
T ss_dssp             SSSTHHHHHHHHHTTSSSSSSTTTSSSEEEEHHHHHHHHHHHTTTSSSSSHHHHHHHHHHHHHTTTEEE
T ss_pred             CCCChHHHHHHHhCCCCCCCCCCCceeeeecHHHHHHHHHHhhcccccCCHHHHHHHHHHHHhcCceEC
Confidence            689999999999999999999999999999999999999999999999999999999999999999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L11 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L11 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacteria, plant chloroplast, red algal chloroplast, cyanelle and archaeabacterial L11; and mammalian, plant and yeast L12 (YL15). L11 is a protein of 140 to 165 amino-acid residues. In E. coli, the C-terminal half of L11 has been shown [] to be in an extended and loosely folded conformation and is likely to be buried within the ribosomal structure.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 1VQN_I 2OTJ_I 3G6E_I 3CME_I 1YIJ_I 1YI2_I 3G4S_I 3CMA_I 3I55_I 1VQ7_I ....

>PF03946 Ribosomal_L11_N: Ribosomal protein L11, N-terminal domain; InterPro: IPR020784 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.88  E-value=6.2e-23  Score=168.65  Aligned_cols=59  Identities=63%  Similarity=1.091  Sum_probs=56.7

Q ss_pred             EEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCC-CceeeEEEEEeCCCeE
Q 042478          811 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKA-GYVIPVEITVYDDRSF  869 (954)
Q Consensus       811 ~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~-g~~i~v~i~v~~dr~~  869 (954)
                      +|||+|+||+|+|+|||||+|||+|||+|+||||||++|++|+ |++|||+|+||+||+|
T Consensus         1 ~i~l~v~aG~A~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~k~G~~v~V~i~v~~d~sf   60 (60)
T PF03946_consen    1 VIKLRVPAGKATPAPPLGPALGPLGINIKKFCKDFNKATKDYKPGIPVPVKITVYNDKSF   60 (60)
T ss_dssp             EEEEEEETTSSSSTTTSTHHHHTTTS-HHHHHHHHHHHTTTCTTSSEEEEEEEEETTSEE
T ss_pred             CEEEEEecCcccCCCCcCcccccCCCCHHHHHHHHHHHHhcccCCCEEEEEEEEeCCCCC
Confidence            5899999999999999999999999999999999999999988 9999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L11 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L11 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacteria, plant chloroplast, red algal chloroplast, cyanelle and archaeabacterial L11; and mammalian, plant and yeast L12 (YL15). L11 is a protein of 140 to 165 amino-acid residues. In E. coli, the C-terminal half of L11 has been shown [] to be in an extended and loosely folded conformation and is likely to be buried within the ribosomal structure.; PDB: 2ZJQ_F 2ZJP_F 3CF5_F 2WRJ_K 2WH4_K 2WRL_K 3FIN_L 2X9U_K 3I8I_L 2XUX_K ....

>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=9.5e-21  Score=223.45  Aligned_cols=241  Identities=34%  Similarity=0.464  Sum_probs=180.0

Q ss_pred             ccccccC--CCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCC
Q 042478          129 SKNLSTE--SNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMIN  206 (954)
Q Consensus       129 ~~~~w~~--~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G  206 (954)
                      ....|..  +.+|+||.|+|||+||+..||+|.+....  .            .+|... ++..         .+.+.+|
T Consensus       129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~--~------------~~~~~~-~~~~---------~~~d~~~  184 (508)
T COG1404         129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA--G------------GDFVDG-DPEP---------PFLDDNG  184 (508)
T ss_pred             cccccccccCCCCCCeEEEEeccCCCCCChhhhccccc--c------------cccccC-CCCC---------CCCCCCC
Confidence            4467777  89999999999999999999999865332  0            001000 0000         0112227


Q ss_pred             chhhhccccccc-------cceeccCCCcEEEEEEecCC-C-CChHHHHHHHHHHhcCC--ccEEEecccCCCCCCCccC
Q 042478          207 ASTNTDEGLAAG-------LARGGAPLAHLAIYKACWDI-G-CTDADVLKAFDKAIHDG--VDVLSVSIGNEIPLFSYID  275 (954)
Q Consensus       207 ~GTa~v~G~a~G-------~~~GvAP~A~L~~yKv~~~~-g-~~~~dil~Aid~Ai~dg--vdVINlSlG~~~~~~~~~~  275 (954)
                      ||| |++|..++       ...|+||+++++.+|++... | ...++++.+++++++.+  +++||||+|... .. ...
T Consensus       185 hGt-~vag~ia~~~~~~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~~-~~-~~~  261 (508)
T COG1404         185 HGT-HVAGTIAAVIFDNGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSL-SD-SAS  261 (508)
T ss_pred             Ccc-eeeeeeeeecccCCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCCc-cc-ccc
Confidence            999 99997766       37899999999999999865 5 66778899999999999  999999999851 11 222


Q ss_pred             cccHHHHHHHHHHHCC-CEEEEeCCCCCCCCCc----cccCC--CceEEEcccccCCCccceeecCCCeEEeeeeeeccC
Q 042478          276 QRDSIAIGSFHAIAKG-ITVVSSAGNDGPVAQT----IVNTA--PWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGK  348 (954)
Q Consensus       276 ~~d~~~~a~~~A~~~G-i~VV~AAGN~G~~~~t----~~~~a--p~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~  348 (954)
                        ..+..++..++..| +++|+|+||+|.+...    .+...  +.+++|+|.+                          
T Consensus       262 --~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~--------------------------  313 (508)
T COG1404         262 --PALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD--------------------------  313 (508)
T ss_pred             --HHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC--------------------------
Confidence              56777888888777 9999999999966421    11111  2444444421                          


Q ss_pred             cCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcc
Q 042478          349 VSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNL  428 (954)
Q Consensus       349 ~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~  428 (954)
                                                                                                      
T Consensus       314 --------------------------------------------------------------------------------  313 (508)
T COG1404         314 --------------------------------------------------------------------------------  313 (508)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEe-----cCC
Q 042478          429 IPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILS-----AYP  503 (954)
Q Consensus       429 ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~s-----a~~  503 (954)
                                                            ..+.++.||++|+..      ..|++|||.+|.+     .++
T Consensus       314 --------------------------------------~~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~~  349 (508)
T COG1404         314 --------------------------------------LSDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLP  349 (508)
T ss_pred             --------------------------------------CCCccccccccCCCC------CcceeCCCccccccccceeee
Confidence                                                  124567899999851      1299999999998     555


Q ss_pred             CCCCCCCCc--eEeecCCCchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHhccc
Q 042478          504 PIGSKDIQG--YALLSGTSMSCPHVAGIAALIKSLHR-DWSPAAIRSALVTTAS  554 (954)
Q Consensus       504 ~~~~~~~~~--y~~~SGTSMAaP~VAG~aALl~q~~P-~~sp~~Iks~L~~TA~  554 (954)
                      +      ..  |..++||||++|||+|++||+++.+| .+++.+++..+.+++.
T Consensus       350 ~------~~~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~  397 (508)
T COG1404         350 G------DGADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAG  397 (508)
T ss_pred             C------CccceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccc
Confidence            4      34  99999999999999999999999999 8999999999888877

>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=6.9e-17  Score=171.88  Aligned_cols=92  Identities=18%  Similarity=0.206  Sum_probs=65.4

Q ss_pred             CceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCC-------CCCCCCCCCCCCCcc
Q 042478          511 QGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGS-------TRKEADPFDIGGGHV  583 (954)
Q Consensus       511 ~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~-------~~~~~~~~~~GaG~v  583 (954)
                      .....-||||.|+|-.||+.||-++++|.++..+++.+-.-|.++..     +.|...       .....-+..||+|.+
T Consensus       376 ~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrns-----lfd~~~rf~w~mngvglefnhlfgfgvl  450 (629)
T KOG3526|consen  376 RCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNS-----LFDGRCRFEWQMNGVGLEFNHLFGFGVL  450 (629)
T ss_pred             ceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccch-----hhcccceEEEeccccceeeecccccccc
Confidence            34567899999999999999999999999999999988777766532     111100       112234557999999


Q ss_pred             CcccccCCCccccCCchhHHHhhhcCC
Q 042478          584 NPNKAMNPGLVYDITVEDYIQFLCFMG  610 (954)
Q Consensus       584 n~~~Al~pglvyd~~~~dy~~flc~~g  610 (954)
                      |+.+.+....-+...+..|   -|..|
T Consensus       451 dagamv~lak~wktvppry---hc~ag  474 (629)
T KOG3526|consen  451 DAGAMVMLAKAWKTVPPRY---HCTAG  474 (629)
T ss_pred             cHHHHHHHHHHhccCCCce---eeccc
Confidence            9988776555555555443   46555

>cd04056 Peptidases_S53 Peptidase domain in the S53 family

Probab=99.69  E-value=1.9e-16  Score=180.36  Aligned_cols=104  Identities=27%  Similarity=0.312  Sum_probs=81.3

Q ss_pred             cceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhcC---CccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEE
Q 042478          219 LARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHD---GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVV  295 (954)
Q Consensus       219 ~~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~d---gvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV  295 (954)
                      .+.||||+|+|..|+++++.   ..+++.++.+++++   +++|||+|||...... ...+.+.+..++.+|..+||+||
T Consensus        82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~-~~~~~~~~~~~~~~a~~~Gitvv  157 (361)
T cd04056          82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSL-PPAYAQRVCNLFAQAAAQGITVL  157 (361)
T ss_pred             HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCcccccc-CHHHHHHHHHHHHHHHhCCeEEE
Confidence            36899999999999998542   46678888888887   9999999999975111 00111467778888999999999


Q ss_pred             EeCCCCCCCCC-----------ccccCCCceEEEcccccCCC
Q 042478          296 SSAGNDGPVAQ-----------TIVNTAPWIITVGATTIDRA  326 (954)
Q Consensus       296 ~AAGN~G~~~~-----------t~~~~ap~vitVgAs~~d~~  326 (954)
                      +||||+|....           ..++..|||++||+++....
T Consensus       158 aAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~  199 (361)
T cd04056         158 AASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG  199 (361)
T ss_pred             EeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence            99999997653           24578899999999876653

Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-

>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases

Probab=99.30  E-value=2.4e-11  Score=117.46  Aligned_cols=120  Identities=36%  Similarity=0.555  Sum_probs=97.8

Q ss_pred             eecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCc-hHHHHHHHHHHcC
Q 042478          331 ITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQ-DIQSAAISVTQAG  409 (954)
Q Consensus       331 ~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~-~~~~k~~~~~~aG  409 (954)
                      ++|||++++.|++++....  ..+++++.... ........|.+..++..+++||||+|++  +.| .+.+|..+++++|
T Consensus         2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~-~~~~~~~~C~~~~~~~~~v~GkIVlc~~--~~~~~~~~k~~~~~~~G   76 (126)
T cd02120           2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSAN-SGDVDASLCLPGSLDPSKVKGKIVLCDR--GGNTSRVAKGDAVKAAG   76 (126)
T ss_pred             EEeCCCCEEEEEEccCCCC--CccceEeccCc-CCCCccccCCCCCCChhhccccEEEEeC--CCCccHHHHHHHHHHcC
Confidence            6789999999999996554  45677653221 2344558899988888999999999999  778 9999999999999


Q ss_pred             ceEEEEEecCCCC---CCCCcccceEEeehhhHHHHHHHHhhcCCCccc
Q 042478          410 GVGLIYAQFHTDG---LDSCNLIPCIKVNYEVGTQILSYIRRARSPIAK  455 (954)
Q Consensus       410 a~gvi~~n~~~~~---~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~  455 (954)
                      |.|+|++++..+.   ......+|+++|+.++|+.|++|++++..++++
T Consensus        77 A~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~  125 (126)
T cd02120          77 GAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT  125 (126)
T ss_pred             CcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence            9999999987654   223468999999999999999999988766554

This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu

>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase

Probab=99.21  E-value=6.5e-11  Score=117.14  Aligned_cols=112  Identities=21%  Similarity=0.229  Sum_probs=89.2

Q ss_pred             ceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCC----CCCc
Q 042478          352 GFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGL----DSCN  427 (954)
Q Consensus       352 ~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~----~~~~  427 (954)
                      ...++++.          ..|...++...+++||||||+|  |.|.+.+|..+++++||.|+|++|+.....    ....
T Consensus        26 ~~~~lv~~----------g~g~~~d~~~~dv~GkIvL~~r--g~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~   93 (143)
T cd02133          26 KTYELVDA----------GLGTPEDFEGKDVKGKIALIQR--GEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAV   93 (143)
T ss_pred             cEEEEEEc----------cCCchhccCCCCccceEEEEEC--CCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCC
Confidence            35677764          3455556667789999999999  889999999999999999999999876541    1235


Q ss_pred             ccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCC
Q 042478          428 LIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPN  480 (954)
Q Consensus       428 ~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~  480 (954)
                      .+|+++|+.++|+.|++|+++    .+++.+..+.. ..+.+.++.||||||.
T Consensus        94 ~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~  141 (143)
T cd02133          94 FIPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPW  141 (143)
T ss_pred             eEeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCC
Confidence            689999999999999999987    55555555444 4577889999999996

This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin

>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=98.92  E-value=3.2e-09  Score=94.37  Aligned_cols=78  Identities=31%  Similarity=0.564  Sum_probs=58.0

Q ss_pred             eEEEEEcCCCCCCchhchhhHHHHHHHHhCcc----ccccccEEEEEccceeEEEEEcCHHHHHHHHcCCCeeEEEeCce
Q 042478           34 VHIVYMGEKKYEDPVAITKSHHRFLSTVLGSK----EAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGI  109 (954)
Q Consensus        34 ~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~----~~~~~~i~~~y~~~~nGfs~~l~~~~~~~L~~~p~V~~V~~~~~  109 (954)
                      +|||.|++...  .......|.+++.+++.+.    .....++++.|+..||||+++|+++++++|+++|+|++|+||+.
T Consensus         1 ~YIV~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~   78 (82)
T PF05922_consen    1 RYIVVFKDDAS--AASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQV   78 (82)
T ss_dssp             EEEEEE-TTST--HHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECE
T ss_pred             CEEEEECCCCC--cchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCce
Confidence            59999999732  2223577888887665432    23577899999999999999999999999999999999999999


Q ss_pred             eecc
Q 042478          110 LKLH  113 (954)
Q Consensus       110 ~~l~  113 (954)
                      +++|
T Consensus        79 v~l~   82 (82)
T PF05922_consen   79 VSLH   82 (82)
T ss_dssp             EEE-
T ss_pred             EecC
Confidence            9875

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....

>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH)

Probab=98.70  E-value=6.4e-08  Score=93.13  Aligned_cols=84  Identities=13%  Similarity=0.152  Sum_probs=71.8

Q ss_pred             CCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC-----C-C--CCcccceEEeehhhHH
Q 042478          369 ANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG-----L-D--SCNLIPCIKVNYEVGT  440 (954)
Q Consensus       369 ~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~-----~-~--~~~~ip~~~i~~~~g~  440 (954)
                      .+.|.+..++..+++|||+||+|  |.|.|.+|..+++++||.|+|++|+....     . .  ....+|.++|+.++|+
T Consensus        29 ~~gC~~~~~~~~~~~GkIvLv~r--g~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~  106 (122)
T cd04816          29 PAGCDASDYDGLDVKGAIVLVDR--GGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGA  106 (122)
T ss_pred             ccCCCccccCCCCcCCeEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHH
Confidence            47899888888899999999999  89999999999999999999999987632     1 1  3456999999999999


Q ss_pred             HHHHHHhhcCCCcc
Q 042478          441 QILSYIRRARSPIA  454 (954)
Q Consensus       441 ~l~~~~~s~~~~~~  454 (954)
                      .|++++..+.+.++
T Consensus       107 ~l~~~l~~g~~v~~  120 (122)
T cd04816         107 ALRRRLGAGETLEL  120 (122)
T ss_pred             HHHHHHcCCCEEEE
Confidence            99999987765443

This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []

Probab=98.66  E-value=3.4e-08  Score=91.41  Aligned_cols=77  Identities=25%  Similarity=0.380  Sum_probs=63.9

Q ss_pred             CCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC-------CCCCcccceEEeehhhHH
Q 042478          368 SANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG-------LDSCNLIPCIKVNYEVGT  440 (954)
Q Consensus       368 ~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~-------~~~~~~ip~~~i~~~~g~  440 (954)
                      ....|.+..+...+++||||||+|  |.|+|.+|..+++++||.|+|++|.....       ......||+++|+.++|+
T Consensus        18 ~~~~~~~~~~~~~~~~gkIvlv~r--g~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~   95 (101)
T PF02225_consen   18 DEGDCCPSDYNGSDVKGKIVLVER--GSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGE   95 (101)
T ss_dssp             ECCHHHHHHTSTSTCTTSEEEEES--TSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHH
T ss_pred             CcccccccccCCccccceEEEEec--CCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHh
Confidence            345677778888999999999999  99999999999999999999999922111       345688999999999999


Q ss_pred             HHHHHH
Q 042478          441 QILSYI  446 (954)
Q Consensus       441 ~l~~~~  446 (954)
                      .|++|+
T Consensus        96 ~L~~~i  101 (101)
T PF02225_consen   96 ALLAYI  101 (101)
T ss_dssp             HHHHHH
T ss_pred             hhhccC
Confidence            999986

The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....

>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like

Probab=98.63  E-value=1.6e-07  Score=91.96  Aligned_cols=86  Identities=12%  Similarity=0.065  Sum_probs=72.1

Q ss_pred             CCCccCCCCC--CcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCC-CC------CCCCcccceEEeehhh
Q 042478          368 SANDCRQGSL--NATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHT-DG------LDSCNLIPCIKVNYEV  438 (954)
Q Consensus       368 ~~~~C~~~~~--~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~-~~------~~~~~~ip~~~i~~~~  438 (954)
                      ..+.|.+...  ++.++.|+|+|++|  |.|+|.+|..+++++||.++|+||+.. ..      ......+|+++|+..+
T Consensus        43 ~~~gC~~~~~~~~~~~~~g~IaLV~R--G~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~  120 (138)
T cd02122          43 DHYGCDPDTRFPIPPNGEPWIALIQR--GNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPK  120 (138)
T ss_pred             CcCCCCCCccccCCccCCCeEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHH
Confidence            4578998776  56789999999999  999999999999999999999999886 21      1223468999999999


Q ss_pred             HHHHHHHHhhcCCCccc
Q 042478          439 GTQILSYIRRARSPIAK  455 (954)
Q Consensus       439 g~~l~~~~~s~~~~~~~  455 (954)
                      |+.|++++..+.+.+.+
T Consensus       121 G~~l~~~l~~G~~Vtv~  137 (138)
T cd02122         121 GMEILELLERGISVTMV  137 (138)
T ss_pred             HHHHHHHHHcCCcEEEe
Confidence            99999999887765543

This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase

>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like

Probab=98.62  E-value=1.5e-07  Score=89.45  Aligned_cols=87  Identities=15%  Similarity=0.078  Sum_probs=72.7

Q ss_pred             eeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC-----C--CC
Q 042478          353 FTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG-----L--DS  425 (954)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~-----~--~~  425 (954)
                      .+|++..       +....|.+..+.+.+++|||+|++|  |.|+|.+|..+++++||.++|+||+....     .  ..
T Consensus        21 ~~~~~~~-------~~~~gC~~~~~~~~~l~gkIaLV~R--G~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~   91 (120)
T cd02129          21 LLPLRNL-------TSSVLCSASDVPPGGLKGKAVVVMR--GNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYE   91 (120)
T ss_pred             ceeeecC-------CCcCCCCccccCccccCCeEEEEEC--CCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCc
Confidence            4566643       3447799988888899999999999  99999999999999999999999997642     1  13


Q ss_pred             CcccceEEeehhhHHHHHHHHhh
Q 042478          426 CNLIPCIKVNYEVGTQILSYIRR  448 (954)
Q Consensus       426 ~~~ip~~~i~~~~g~~l~~~~~s  448 (954)
                      ...||+++|+.++|+.|.+.+..
T Consensus        92 ~v~IP~v~Is~~dG~~i~~~l~~  114 (120)
T cd02129          92 KIDIPVALLSYKDMLDIQQTFGD  114 (120)
T ss_pred             CCcccEEEEeHHHHHHHHHHhcc
Confidence            46789999999999999988764

This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY)

Probab=98.56  E-value=6.4e-07  Score=86.21  Aligned_cols=83  Identities=17%  Similarity=0.194  Sum_probs=68.4

Q ss_pred             CCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCC-CC------CCCCcccceEEeehhhHHH
Q 042478          369 ANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHT-DG------LDSCNLIPCIKVNYEVGTQ  441 (954)
Q Consensus       369 ~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~-~~------~~~~~~ip~~~i~~~~g~~  441 (954)
                      ...|.+..+ +.+++|||+|++|  |.|.|.+|..+++++||.|+|+||+.. ..      ..+...+|+++|+.++|+.
T Consensus        31 ~~gC~~~~~-~~~~~gkIvlv~r--g~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~  107 (122)
T cd02130          31 NLGCDAADY-PASVAGNIALIER--GECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKA  107 (122)
T ss_pred             CCCCCcccC-CcCCCCEEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHH
Confidence            347877555 3579999999999  999999999999999999999999873 22      1234579999999999999


Q ss_pred             HHHHHhhcCCCcc
Q 042478          442 ILSYIRRARSPIA  454 (954)
Q Consensus       442 l~~~~~s~~~~~~  454 (954)
                      |+..+..+.+.++
T Consensus       108 L~~~l~~g~~v~~  120 (122)
T cd02130         108 LVAALANGGEVSA  120 (122)
T ss_pred             HHHHHhcCCcEEE
Confidence            9999988766544

This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab

>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1

Probab=98.54  E-value=3.2e-07  Score=87.78  Aligned_cols=83  Identities=19%  Similarity=0.276  Sum_probs=69.3

Q ss_pred             CCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC--C-----CCCcccceEEeehhhHH
Q 042478          368 SANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG--L-----DSCNLIPCIKVNYEVGT  440 (954)
Q Consensus       368 ~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~--~-----~~~~~ip~~~i~~~~g~  440 (954)
                      ..+.|.+..+. .+++|||+||+|  |.|+|.+|..+++++||.|+|++|+....  .     .....+|+++|+.++|+
T Consensus        26 ~~~~C~~~~~~-~~v~GkIvL~~r--g~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~  102 (118)
T cd04818          26 NTDGCTAFTNA-AAFAGKIALIDR--GTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGD  102 (118)
T ss_pred             cccccCCCCcC-CCCCCEEEEEEC--CCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHH
Confidence            45689888774 459999999998  88999999999999999999999987642  1     12357999999999999


Q ss_pred             HHHHHHhhcCCCc
Q 042478          441 QILSYIRRARSPI  453 (954)
Q Consensus       441 ~l~~~~~s~~~~~  453 (954)
                      .|++|++.+...+
T Consensus       103 ~l~~~l~~g~~v~  115 (118)
T cd04818         103 ALKAALAAGGTVT  115 (118)
T ss_pred             HHHHHHhcCCcEE
Confidence            9999998766544

A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.

>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa)

Probab=98.54  E-value=3.5e-07  Score=87.21  Aligned_cols=85  Identities=21%  Similarity=0.246  Sum_probs=69.9

Q ss_pred             CCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC----C---C----CCcccceEEeehh
Q 042478          369 ANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG----L---D----SCNLIPCIKVNYE  437 (954)
Q Consensus       369 ~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~----~---~----~~~~ip~~~i~~~  437 (954)
                      .+.|.+.. +..+++|||+|++|  |.|+|.+|..+++++||.++|+||+....    .   .    ....||+++|+..
T Consensus        21 ~~gC~~~~-~~~~~~g~I~Lv~R--G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~   97 (118)
T cd02127          21 LEACEELR-NIHDINGNIALIER--GGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGK   97 (118)
T ss_pred             cccCCCCC-CccccCCeEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHH
Confidence            46798643 35689999999999  99999999999999999999999976541    1   1    2357899999999


Q ss_pred             hHHHHHHHHhhcCCCcccc
Q 042478          438 VGTQILSYIRRARSPIAKL  456 (954)
Q Consensus       438 ~g~~l~~~~~s~~~~~~~i  456 (954)
                      +|+.|++.+..+..+++.|
T Consensus        98 dG~~L~~~l~~g~~~~~~~  116 (118)
T cd02127          98 NGYMIRKTLERLGLPYAII  116 (118)
T ss_pred             HHHHHHHHHHcCCceEEee
Confidence            9999999998887765543

This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd00538 PA PA: Protease-associated (PA) domain

Probab=98.50  E-value=3.8e-07  Score=87.79  Aligned_cols=84  Identities=19%  Similarity=0.280  Sum_probs=70.4

Q ss_pred             CCCccCCCC--CCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC-----C----CCCcccceEEeeh
Q 042478          368 SANDCRQGS--LNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG-----L----DSCNLIPCIKVNY  436 (954)
Q Consensus       368 ~~~~C~~~~--~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~-----~----~~~~~ip~~~i~~  436 (954)
                      ....|.++.  +...+++||||||+|  |.|.+.+|..+++++||.|+|++++....     .    .....+|+++|+.
T Consensus        29 ~~~~C~~~~~~~~~~~~~GkIvl~~~--g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~  106 (126)
T cd00538          29 PLVGCGYGTTDDSGADVKGKIVLVRR--GGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISY  106 (126)
T ss_pred             ceEEEecCcccccCCCccceEEEEEC--CCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCH
Confidence            346788877  778899999999998  88999999999999999999999987532     1    1346799999999


Q ss_pred             hhHHHHHHHHhhcCCCc
Q 042478          437 EVGTQILSYIRRARSPI  453 (954)
Q Consensus       437 ~~g~~l~~~~~s~~~~~  453 (954)
                      ++|+.|+.|+.++.+.+
T Consensus       107 ~~g~~l~~~~~~~~~v~  123 (126)
T cd00538         107 ADGEALLSLLEAGKTVT  123 (126)
T ss_pred             HHHHHHHHHHhcCCceE
Confidence            99999999998765443

The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g

>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins

Probab=98.48  E-value=5.3e-07  Score=87.19  Aligned_cols=82  Identities=20%  Similarity=0.192  Sum_probs=67.3

Q ss_pred             CCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC------------CC---CCcccceEE
Q 042478          369 ANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG------------LD---SCNLIPCIK  433 (954)
Q Consensus       369 ~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~------------~~---~~~~ip~~~  433 (954)
                      .+.|.+... +.+++|||+|++|  |.|+|.+|..+++++||.++|++|+..+.            ..   +...||+++
T Consensus        27 ~~gC~~~~~-~~~~~gkIaLv~R--G~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~  103 (126)
T cd02126          27 YRACSEITN-AEEVKGKIAIMER--GDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVF  103 (126)
T ss_pred             hhcccCCCC-ccccCceEEEEEC--CCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEE
Confidence            467987543 5579999999999  99999999999999999999999876431            11   245789999


Q ss_pred             eehhhHHHHHHHHhhcCCCc
Q 042478          434 VNYEVGTQILSYIRRARSPI  453 (954)
Q Consensus       434 i~~~~g~~l~~~~~s~~~~~  453 (954)
                      |+..+|+.|++++..+...+
T Consensus       104 I~~~dG~~L~~~l~~~~~~~  123 (126)
T cd02126         104 LFSKEGSKLLAAIKEHQNVE  123 (126)
T ss_pred             EEHHHHHHHHHHHHhCCceE
Confidence            99999999999998765543

This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr

>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like

Probab=98.42  E-value=1.1e-06  Score=85.13  Aligned_cols=96  Identities=11%  Similarity=0.027  Sum_probs=71.9

Q ss_pred             eeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC----CCCCccc
Q 042478          354 TGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG----LDSCNLI  429 (954)
Q Consensus       354 ~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~----~~~~~~i  429 (954)
                      +|++....  ......+.|.+...+..+++|||+|++|  |.|.|.+|..+++++||.++|+||+....    ..+...+
T Consensus        28 ~p~~~~~~--~~~~~~~gC~~~~~~~~~~~g~IaLv~r--g~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~  103 (129)
T cd02124          28 LPLWALSL--DTSVADDACQPLPDDTPDLSGYIVLVRR--GTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSI  103 (129)
T ss_pred             ceEEEeec--ccCCCcccCcCCCcccccccCeEEEEEC--CCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcce
Confidence            56554321  1223457899876666689999999999  88999999999999999999999987543    2233345


Q ss_pred             ceEEeehhhHHHHHHHHhhcCCCcc
Q 042478          430 PCIKVNYEVGTQILSYIRRARSPIA  454 (954)
Q Consensus       430 p~~~i~~~~g~~l~~~~~s~~~~~~  454 (954)
                      |.+.+ .++|+.|++.+..+...++
T Consensus       104 ~~~~~-~~~G~~l~~~l~~G~~vtv  127 (129)
T cd02124         104 IAAVT-PEDGEAWIDALAAGSNVTV  127 (129)
T ss_pred             eeEEe-HHHHHHHHHHHhcCCeEEE
Confidence            66666 9999999999987755443

This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10

Probab=98.40  E-value=1e-06  Score=86.72  Aligned_cols=80  Identities=14%  Similarity=0.186  Sum_probs=66.9

Q ss_pred             CCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC--C---C----CCcccceEEeehhhH
Q 042478          369 ANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG--L---D----SCNLIPCIKVNYEVG  439 (954)
Q Consensus       369 ~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~--~---~----~~~~ip~~~i~~~~g  439 (954)
                      .+.|.+..   .+++|||+|++|  |.|+|.+|..+++++||.++|+||+....  .   .    ....||+++|+..+|
T Consensus        48 ~~gC~~~~---~~~~g~IvLV~R--G~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G  122 (139)
T cd02132          48 LDCCSPST---SKLSGSIALVER--GECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAG  122 (139)
T ss_pred             ccccCCCC---cccCCeEEEEEC--CCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHH
Confidence            46798764   379999999999  99999999999999999999999876533  1   1    135799999999999


Q ss_pred             HHHHHHHhhcCCCc
Q 042478          440 TQILSYIRRARSPI  453 (954)
Q Consensus       440 ~~l~~~~~s~~~~~  453 (954)
                      +.|++++..+...+
T Consensus       123 ~~L~~~l~~g~~Vt  136 (139)
T cd02132         123 DALNKSLDQGKKVE  136 (139)
T ss_pred             HHHHHHHHcCCcEE
Confidence            99999998776543

This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1

Probab=98.38  E-value=1.3e-06  Score=83.17  Aligned_cols=77  Identities=12%  Similarity=0.141  Sum_probs=64.6

Q ss_pred             CCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC---------CCCCcccceEEeehhh
Q 042478          368 SANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG---------LDSCNLIPCIKVNYEV  438 (954)
Q Consensus       368 ~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~---------~~~~~~ip~~~i~~~~  438 (954)
                      ..+.|.+.  +..+++|||+|++|  |.|+|.+|..+++++||.++|+||+....         ......+|+++++.++
T Consensus        26 p~~gC~~~--~~~~l~gkIvLV~R--G~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~  101 (117)
T cd04813          26 PTDACSLQ--EHAEIDGKVALVLR--GGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTS  101 (117)
T ss_pred             CCCCCCCC--CcCCcCCeEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHH
Confidence            34789766  56789999999999  99999999999999999999999876532         1223578999999999


Q ss_pred             HHHHHHHHhh
Q 042478          439 GTQILSYIRR  448 (954)
Q Consensus       439 g~~l~~~~~s  448 (954)
                      +++|..++..
T Consensus       102 g~~L~~l~~~  111 (117)
T cd04813         102 YHLLSSLLPK  111 (117)
T ss_pred             HHHHHHhccc
Confidence            9999987654

A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid

>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR)

Probab=98.37  E-value=1.4e-06  Score=84.19  Aligned_cols=84  Identities=15%  Similarity=0.115  Sum_probs=67.2

Q ss_pred             CCccCCCCCC--cc----cccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC-C-------------CCCcc
Q 042478          369 ANDCRQGSLN--AT----LAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG-L-------------DSCNL  428 (954)
Q Consensus       369 ~~~C~~~~~~--~~----~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~-~-------------~~~~~  428 (954)
                      .+.|.+....  +.    ...++|+|++|  |.|+|.+|..+++++||.++|+||+..+. .             .+...
T Consensus        22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~R--G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~   99 (127)
T cd02125          22 RTGCKEFDVFFKPKKSEPGRRPVILLLDR--GGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKIT   99 (127)
T ss_pred             cccCCCCcccccccccccCCCceEEEEEC--CCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCce
Confidence            4678875542  22    37889999999  99999999999999999999999986542 1             11236


Q ss_pred             cceEEeehhhHHHHHHHHhhcCCCcc
Q 042478          429 IPCIKVNYEVGTQILSYIRRARSPIA  454 (954)
Q Consensus       429 ip~~~i~~~~g~~l~~~~~s~~~~~~  454 (954)
                      ||+++|+.++|+.|++.+..+...+.
T Consensus       100 IP~v~Is~~~G~~L~~~l~~g~~V~v  125 (127)
T cd02125         100 IPSALITKAFGEKLKKAISNGEMVVI  125 (127)
T ss_pred             EeEEEECHHHHHHHHHHHhcCCeEEE
Confidence            89999999999999999988765543

This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic

>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530

Probab=98.34  E-value=1.7e-06  Score=84.58  Aligned_cols=72  Identities=21%  Similarity=0.179  Sum_probs=60.5

Q ss_pred             CCCcccccceEEEEecCCCCch-----HHHHHHHHHHcCceEEEEEecC--CCC----CCC---CcccceEEeehhhHHH
Q 042478          376 SLNATLAAGKIILCFSRPDTQD-----IQSAAISVTQAGGVGLIYAQFH--TDG----LDS---CNLIPCIKVNYEVGTQ  441 (954)
Q Consensus       376 ~~~~~~v~Gkivl~~~~~g~~~-----~~~k~~~~~~aGa~gvi~~n~~--~~~----~~~---~~~ip~~~i~~~~g~~  441 (954)
                      ++...+++|||+|++|  |.|.     |.+|..+++++||.|+|+||+.  .+.    ..+   ...||+++|++++|+.
T Consensus        49 d~~~~d~~GkIaLI~R--G~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~  126 (139)
T cd04817          49 SYICGGMAGKICLIER--GGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQA  126 (139)
T ss_pred             cccCCCcCccEEEEEC--CCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHH
Confidence            3445689999999999  8999     9999999999999999999997  432    122   4589999999999999


Q ss_pred             HHHHHhhc
Q 042478          442 ILSYIRRA  449 (954)
Q Consensus       442 l~~~~~s~  449 (954)
                      |+..+..+
T Consensus       127 L~~~l~~~  134 (139)
T cd04817         127 LLAALGQS  134 (139)
T ss_pred             HHHHhcCC
Confidence            99887543

This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like

Probab=98.29  E-value=2.7e-06  Score=85.08  Aligned_cols=81  Identities=15%  Similarity=0.137  Sum_probs=68.0

Q ss_pred             CCccCCCCCCc---ccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC----CC-----CCcccceEEeeh
Q 042478          369 ANDCRQGSLNA---TLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG----LD-----SCNLIPCIKVNY  436 (954)
Q Consensus       369 ~~~C~~~~~~~---~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~----~~-----~~~~ip~~~i~~  436 (954)
                      .+.|.+....+   .++.|+|+|++|  |.|+|.+|..+++++||.++|++|+..+.    ..     ....||+++|+.
T Consensus        50 ~~gC~~~~~~~~~~~~~~g~IvLV~R--G~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~  127 (153)
T cd02123          50 LNACSPIENPPLNSNASGSFIVLIRR--GNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGK  127 (153)
T ss_pred             cccCCCCcccccccccCCCeEEEEEC--CCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeH
Confidence            46898766533   789999999999  99999999999999999999999987543    11     145799999999


Q ss_pred             hhHHHHHHHHhhcCC
Q 042478          437 EVGTQILSYIRRARS  451 (954)
Q Consensus       437 ~~g~~l~~~~~s~~~  451 (954)
                      ++|+.|+.++.....
T Consensus       128 ~dg~~L~~~l~~~~~  142 (153)
T cd02123         128 STGEILKKYASYEKG  142 (153)
T ss_pred             HHHHHHHHHHhcCCc
Confidence            999999999876543

This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce

>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=5e-05  Score=94.60  Aligned_cols=98  Identities=20%  Similarity=0.217  Sum_probs=57.0

Q ss_pred             ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhcCCc-cEEEecccCCCCCCC-ccCcccHHHHHHHHHHHCCCEEEEe
Q 042478          220 ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGV-DVLSVSIGNEIPLFS-YIDQRDSIAIGSFHAIAKGITVVSS  297 (954)
Q Consensus       220 ~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~dgv-dVINlSlG~~~~~~~-~~~~~d~~~~a~~~A~~~Gi~VV~A  297 (954)
                      ..-+||+|+|..|-+-  . ........|++.-...=+ -+|-+||+....... +...-+.+..-...|..+||.+++|
T Consensus       288 s~A~AP~A~I~lvvap--~-~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~AA  364 (1174)
T COG4934         288 SHAMAPKANIDLVVAP--N-PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFAA  364 (1174)
T ss_pred             hhccCccCceEEEEcC--C-CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEEe
Confidence            4679999999998662  1 222222233332222211 233356665321110 1111134555556778999999999


Q ss_pred             CCCCCCCCCc--------cccCCCceEEEcc
Q 042478          298 AGNDGPVAQT--------IVNTAPWIITVGA  320 (954)
Q Consensus       298 AGN~G~~~~t--------~~~~ap~vitVgA  320 (954)
                      +|.+|....+        .++.+||+++||-
T Consensus       365 SGD~Gay~~~~~~~~sv~~PasSPYVtsVGG  395 (1174)
T COG4934         365 SGDSGAYDDTPTPYLSVNFPASSPYVTSVGG  395 (1174)
T ss_pred             cccccccCCCcccceeecccCCCccEEeecC
Confidence            9999866542        3467899999996

>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2

Probab=98.01  E-value=5.1e-05  Score=73.56  Aligned_cols=73  Identities=19%  Similarity=0.211  Sum_probs=60.5

Q ss_pred             CCCcccccceEEEEecCCCCc--hHHHHHHHHHHcCceEEEEEecCCCCC----------CCCcccceEEeehhhHHHHH
Q 042478          376 SLNATLAAGKIILCFSRPDTQ--DIQSAAISVTQAGGVGLIYAQFHTDGL----------DSCNLIPCIKVNYEVGTQIL  443 (954)
Q Consensus       376 ~~~~~~v~Gkivl~~~~~g~~--~~~~k~~~~~~aGa~gvi~~n~~~~~~----------~~~~~ip~~~i~~~~g~~l~  443 (954)
                      ++...+++||||++++  |.|  .+.+|..++.++||.|+|++|+.....          .....+|++.|+.++|+.|.
T Consensus        37 d~~~~~v~GkIvlv~~--g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~  114 (127)
T cd04819          37 DFDGLDLEGKIAVVKR--DDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLA  114 (127)
T ss_pred             HcCCCCCCCeEEEEEc--CCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHH
Confidence            3445679999999999  778  889999999999999999998765431          12357999999999999999


Q ss_pred             HHHhhcC
Q 042478          444 SYIRRAR  450 (954)
Q Consensus       444 ~~~~s~~  450 (954)
                      ..++.+.
T Consensus       115 ~~l~~g~  121 (127)
T cd04819         115 RVAERND  121 (127)
T ss_pred             HHHhcCC
Confidence            9887643

A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola

>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.84  E-value=9e-05  Score=70.17  Aligned_cols=90  Identities=12%  Similarity=0.190  Sum_probs=59.4

Q ss_pred             ecccCCCCceEEEEEEEEecCCCCceeEEEEEc--------CCCc-----------eEEEEcCEEEEecCCeEEEEEEEE
Q 042478          642 TIPNLHNNETVTVTRKVTNVGQINSAYEALVEA--------PYGV-----------NMTVEPEVISFNMTIKILSFRVTF  702 (954)
Q Consensus       642 ~~~~~~~~~~~tv~rtvtNvg~~~~tY~~~v~~--------p~g~-----------~v~v~P~~l~f~~~g~~~~~~Vt~  702 (954)
                      ++.+.  ....+++.|++|.|+.+.+|+++...        ..|.           .+...|.++++ ++|++++++|++
T Consensus         2 ~L~d~--~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti   78 (112)
T PF06280_consen    2 SLKDT--GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTI   78 (112)
T ss_dssp             EEEEE---SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEE
T ss_pred             Ccccc--CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEE
Confidence            34444  34578889999999999999998651        1121           56677788888 689999999999


Q ss_pred             EeCCccCCCCCCCceEEEEEEECC-cc-eEEcCcc
Q 042478          703 FSNHKVHPVPDAEYRFGSLTWTDD-SV-DSRFNGF  735 (954)
Q Consensus       703 ~~~~~~~~~~~~~~~~G~l~w~~~-~~-~vr~P~~  735 (954)
                      +.+..+.+ ..+.+++|+|.+++. .+ .+++|++
T Consensus        79 ~~p~~~~~-~~~~~~eG~I~~~~~~~~~~lsIPy~  112 (112)
T PF06280_consen   79 TPPSGLDA-SNGPFYEGFITFKSSDGEPDLSIPYM  112 (112)
T ss_dssp             E--GGGHH-TT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred             EehhcCCc-ccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence            99653211 346789999999986 44 7999985

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.

>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.00032  Score=81.46  Aligned_cols=75  Identities=20%  Similarity=0.055  Sum_probs=55.4

Q ss_pred             EeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478          514 ALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN  590 (954)
Q Consensus       514 ~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~  590 (954)
                      .--.|||.++|..||+.+|.++++|.++..++..++..++..........+.+  .....-...+|.|++|...-+.
T Consensus       250 e~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n--~~g~~~~h~~g~~~~~~~~~~~  324 (431)
T KOG3525|consen  250 EGHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSN--GAGGLVSHLYGFGLLDAKALVS  324 (431)
T ss_pred             ccCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEe--cCCceeeeeecccccCcchhhh
Confidence            44569999999999999999999999999999999988887654333233322  1222233468999999876554

>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2

Probab=97.09  E-value=0.0014  Score=64.21  Aligned_cols=73  Identities=21%  Similarity=0.304  Sum_probs=59.0

Q ss_pred             CcccccceEEEEecCCCCc------hHHHH-------HHHHHHcCceEEEEEecCCC-------C---C-CCCcccceEE
Q 042478          378 NATLAAGKIILCFSRPDTQ------DIQSA-------AISVTQAGGVGLIYAQFHTD-------G---L-DSCNLIPCIK  433 (954)
Q Consensus       378 ~~~~v~Gkivl~~~~~g~~------~~~~k-------~~~~~~aGa~gvi~~n~~~~-------~---~-~~~~~ip~~~  433 (954)
                      +..+++||||++.+  +.|      .+..|       ...++++||.|+|++|....       .   . .....+|++.
T Consensus        34 ~~~~v~GKIvlv~~--~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~  111 (134)
T cd04815          34 PAGAVKGKIVFFNQ--PMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAA  111 (134)
T ss_pred             chhhcCCeEEEecC--CccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEE
Confidence            45689999999999  889      88887       68999999999999985421       1   1 2235699999


Q ss_pred             eehhhHHHHHHHHhhcCCC
Q 042478          434 VNYEVGTQILSYIRRARSP  452 (954)
Q Consensus       434 i~~~~g~~l~~~~~s~~~~  452 (954)
                      |+.++++.|...++.+..+
T Consensus       112 is~ed~~~L~r~l~~g~~v  130 (134)
T cd04815         112 ISVEDADMLERLAARGKPI  130 (134)
T ss_pred             echhcHHHHHHHHhCCCCe
Confidence            9999999999988876543

A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a

>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR)

Probab=96.93  E-value=0.0016  Score=66.48  Aligned_cols=68  Identities=15%  Similarity=0.205  Sum_probs=55.9

Q ss_pred             cccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC--C-------------------------C-------
Q 042478          379 ATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG--L-------------------------D-------  424 (954)
Q Consensus       379 ~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~--~-------------------------~-------  424 (954)
                      ..+++|||+|+++  |.|.+.+|..+++++||+|+|+|++..+.  .                         .       
T Consensus        51 gv~v~GkIvLvr~--G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~  128 (183)
T cd02128          51 GVSVNGSVVLVRA--GKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPS  128 (183)
T ss_pred             CCCCCCeEEEEEC--CCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcc
Confidence            4579999999999  88999999999999999999999884210  0                         0       


Q ss_pred             ---CCcccceEEeehhhHHHHHHHHhh
Q 042478          425 ---SCNLIPCIKVNYEVGTQILSYIRR  448 (954)
Q Consensus       425 ---~~~~ip~~~i~~~~g~~l~~~~~s  448 (954)
                         ....||+.-|+..++..|++.+.-
T Consensus       129 ~~~~lP~IPs~PIS~~da~~lL~~l~G  155 (183)
T cd02128         129 QSSGLPNIPAQTISAAAAAKLLSKMGG  155 (183)
T ss_pred             cccCCCCCCEeccCHHHHHHHHHHcCC
Confidence               013589999999999999998754

This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra

>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3

Probab=96.30  E-value=0.014  Score=58.00  Aligned_cols=77  Identities=12%  Similarity=0.148  Sum_probs=54.8

Q ss_pred             CCccCCCCCCcccccceEEEEecCC----------------CCchHHHHHHHHHHcCceEEEEEecCCCCCCCCccc---
Q 042478          369 ANDCRQGSLNATLAAGKIILCFSRP----------------DTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLI---  429 (954)
Q Consensus       369 ~~~C~~~~~~~~~v~Gkivl~~~~~----------------g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~i---  429 (954)
                      ...|....+...+++|||||+.+..                ..|.+..|..++.++||.|||+|++.....+.....   
T Consensus        33 ~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~~~~~~~~~~~~  112 (151)
T cd04822          33 APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNSHSGDADRLPRF  112 (151)
T ss_pred             ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcccCccccccccc
Confidence            4567777777889999999997731                126788999999999999999999876542222112   


Q ss_pred             ---ceEEeehhhHHHHHHH
Q 042478          430 ---PCIKVNYEVGTQILSY  445 (954)
Q Consensus       430 ---p~~~i~~~~g~~l~~~  445 (954)
                         ..++++....+.+...
T Consensus       113 ~~~~~~~~~~~~~~~~~~~  131 (151)
T cd04822         113 GGTAPQRVDIAAADPWFTA  131 (151)
T ss_pred             CccceEEechHHHHHHhhh
Confidence               2566666666666553

A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt

>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1

Probab=96.24  E-value=0.013  Score=57.73  Aligned_cols=63  Identities=10%  Similarity=0.075  Sum_probs=48.8

Q ss_pred             eeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCc------------------hHHHHHHHHHHcCceEEE
Q 042478          353 FTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQ------------------DIQSAAISVTQAGGVGLI  414 (954)
Q Consensus       353 ~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~------------------~~~~k~~~~~~aGa~gvi  414 (954)
                      ..++++..-.    .....|...++...|++||||++.+  |.|                  .+..|..++.++||.|+|
T Consensus        21 ~aelVfvGyG----i~a~~~~~dDYag~DVkGKIVlv~~--g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvI   94 (142)
T cd04814          21 DAPLVFVGYG----IKAPELSWDDYAGLDVKGKVVVVLR--NDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVL   94 (142)
T ss_pred             ceeeEEecCC----cCCCCCChhhcCCCCCCCcEEEEEc--CCCCcccccccccccccccccCHHHHHHHHHHCCCcEEE
Confidence            4566654311    1235688888888899999999988  555                  577899999999999999


Q ss_pred             EEecCCC
Q 042478          415 YAQFHTD  421 (954)
Q Consensus       415 ~~n~~~~  421 (954)
                      ++++...
T Consensus        95 ii~~~~~  101 (142)
T cd04814          95 IVHELAP  101 (142)
T ss_pred             EEeCCCc
Confidence            9998653

A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a

>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]

Probab=95.87  E-value=0.013  Score=66.78  Aligned_cols=72  Identities=19%  Similarity=0.229  Sum_probs=60.3

Q ss_pred             cccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC---------CCCCcccceEEeehhhHHHHHHHHhhc
Q 042478          379 ATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG---------LDSCNLIPCIKVNYEVGTQILSYIRRA  449 (954)
Q Consensus       379 ~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~---------~~~~~~ip~~~i~~~~g~~l~~~~~s~  449 (954)
                      ...++||+++..|  |.|.|.+|...++++||.++++.|+..+.         ...+..||+++++.++++.+.....++
T Consensus        91 ~~kl~~~~~~v~R--GnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~  168 (541)
T KOG2442|consen   91 QSKLSGKVALVFR--GNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSN  168 (541)
T ss_pred             CccccceeEEEec--ccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccC
Confidence            4578999999999  99999999999999999999999995433         234578999999999999998765554


Q ss_pred             CCC
Q 042478          450 RSP  452 (954)
Q Consensus       450 ~~~  452 (954)
                      .+.
T Consensus       169 ~~V  171 (541)
T KOG2442|consen  169 DNV  171 (541)
T ss_pred             CeE
Confidence            443

>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1

Probab=95.81  E-value=0.016  Score=56.75  Aligned_cols=51  Identities=20%  Similarity=0.258  Sum_probs=43.0

Q ss_pred             CCccCCCCCCcccccceEEEEecCCCCc------------hHHHHHHHHHHcCceEEEEEecCCC
Q 042478          369 ANDCRQGSLNATLAAGKIILCFSRPDTQ------------DIQSAAISVTQAGGVGLIYAQFHTD  421 (954)
Q Consensus       369 ~~~C~~~~~~~~~v~Gkivl~~~~~g~~------------~~~~k~~~~~~aGa~gvi~~n~~~~  421 (954)
                      ...|...++...+++|||||+.+  |.|            .+..|..++.++||.|+|++++...
T Consensus        35 ~~~~~~~Dy~~iDVkGKIVlv~~--g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~   97 (137)
T cd04820          35 APELGHDDYAGLDVKGKIVVVLS--GGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS   97 (137)
T ss_pred             ccCcCHhhccCCCCCCeEEEEEc--CCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence            35677777778899999999998  554            3778999999999999999998654

A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.53  E-value=0.084  Score=59.05  Aligned_cols=76  Identities=17%  Similarity=0.076  Sum_probs=61.5

Q ss_pred             CccCCCCC---CcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC-------CCCCcccceEEeehhhH
Q 042478          370 NDCRQGSL---NATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG-------LDSCNLIPCIKVNYEVG  439 (954)
Q Consensus       370 ~~C~~~~~---~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~-------~~~~~~ip~~~i~~~~g  439 (954)
                      ++|.+..-   ........++|+.|  |.|+|.+|..+++++|..++|+||+....       ......++.++++...|
T Consensus        63 ~aC~~i~~~p~~~~~~~~~laLI~R--g~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~g  140 (348)
T KOG4628|consen   63 NACNPITNFPEHSTRSTSFLALIRR--GGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSG  140 (348)
T ss_pred             cccCccccCccCCCCCcceEEEEEc--cCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehH
Confidence            56665322   23556778999999  88999999999999999999999987654       34557789999999999


Q ss_pred             HHHHHHHh
Q 042478          440 TQILSYIR  447 (954)
Q Consensus       440 ~~l~~~~~  447 (954)
                      +.|..|..
T Consensus       141 e~l~~~~~  148 (348)
T KOG4628|consen  141 ELLSSYAG  148 (348)
T ss_pred             HHHHHhhc
Confidence            99998853

>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like

Probab=94.43  E-value=0.046  Score=57.89  Aligned_cols=42  Identities=21%  Similarity=0.139  Sum_probs=37.5

Q ss_pred             cccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC
Q 042478          379 ATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG  422 (954)
Q Consensus       379 ~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~  422 (954)
                      ..+++|||||+++  |.+.+..|..+++++||.|+|+|++..+.
T Consensus        67 gvdv~GKIvLvr~--G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~  108 (220)
T cd02121          67 GIDVKGKIVIARY--GGIFRGLKVKNAQLAGAVGVIIYSDPADD  108 (220)
T ss_pred             CCCCCCeEEEEEC--CCccHHHHHHHHHHcCCEEEEEEeCchhc
Confidence            5689999999998  88888899999999999999999986543

This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower

>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2)

Probab=94.42  E-value=0.047  Score=53.82  Aligned_cols=41  Identities=15%  Similarity=-0.015  Sum_probs=37.1

Q ss_pred             ccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC
Q 042478          380 TLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG  422 (954)
Q Consensus       380 ~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~  422 (954)
                      -+++|||+|++.  |...+..|..++++.||.|+|+|.+..+.
T Consensus        37 V~v~GkIvi~Ry--G~~~RG~Kv~~A~~~GA~GviIYsDP~d~   77 (153)
T cd02131          37 MNVTNQIALLKL--GQAPLLYKLSLLEEAGFGGVLLYVDPCDL   77 (153)
T ss_pred             CCccceEEEEec--cCcchHHHHHHHHHCCCeEEEEecChhhc
Confidence            579999999999  88889999999999999999999986553

This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=93.35  E-value=0.34  Score=42.59  Aligned_cols=58  Identities=24%  Similarity=0.228  Sum_probs=38.0

Q ss_pred             ceEEEEEEEEecCCCC-ceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCCc
Q 042478          650 ETVTVTRKVTNVGQIN-SAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHK  707 (954)
Q Consensus       650 ~~~tv~rtvtNvg~~~-~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~  707 (954)
                      ...+++.+|+|.|+.. ...++++..|+|-.+...|..+.--++|++++++++++++..
T Consensus         5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~   63 (78)
T PF10633_consen    5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPAD   63 (78)
T ss_dssp             EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT
T ss_pred             CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCC
Confidence            5678899999999754 568888899999998888887764478999999999998753

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=92.03  E-value=1.8  Score=39.91  Aligned_cols=79  Identities=20%  Similarity=0.146  Sum_probs=56.2

Q ss_pred             ceEEEEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCCccCCCCCCCceEEEEEEECCcce
Q 042478          650 ETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTDDSVD  729 (954)
Q Consensus       650 ~~~tv~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~~~~~G~l~w~~~~~~  729 (954)
                      ...+.+.+++|.|..+..|++.......-.++++|..-.+ ++|++.+++|+|.+..     .. +...+.|...-....
T Consensus        20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-----~~-g~~~~~l~i~~e~~~   92 (102)
T PF14874_consen   20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK-----PL-GDYEGSLVITTEGGS   92 (102)
T ss_pred             CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC-----CC-ceEEEEEEEEECCeE
Confidence            4456667899999999999987644234567778776555 6899999999999644     22 334677777666666


Q ss_pred             EEcCcc
Q 042478          730 SRFNGF  735 (954)
Q Consensus       730 vr~P~~  735 (954)
                      +..|+-
T Consensus        93 ~~i~v~   98 (102)
T PF14874_consen   93 FEIPVK   98 (102)
T ss_pred             EEEEEE
Confidence            666653

>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]

Probab=88.76  E-value=0.53  Score=46.12  Aligned_cols=77  Identities=14%  Similarity=0.178  Sum_probs=57.0

Q ss_pred             CCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC---------CC----CCcccceEEe
Q 042478          368 SANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG---------LD----SCNLIPCIKV  434 (954)
Q Consensus       368 ~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~---------~~----~~~~ip~~~i  434 (954)
                      ....|.... +.-...|.++|.+|  |.|+|..|..+++++||.++|+.++....         .+    +...+|+.++
T Consensus        73 Pp~aC~elr-N~~f~~d~vaL~eR--GeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fl  149 (193)
T KOG3920|consen   73 PPHACEELR-NEIFAPDSVALMER--GECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFL  149 (193)
T ss_pred             ChhHHHHHh-hcccCCCcEEEEec--CCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEE
Confidence            456676532 23456789999999  99999999999999999999999765432         22    3467899998


Q ss_pred             ehhhHHHHHHHHh
Q 042478          435 NYEVGTQILSYIR  447 (954)
Q Consensus       435 ~~~~g~~l~~~~~  447 (954)
                      -..+|--+..-++
T Consensus       150 lg~~Gy~ir~sL~  162 (193)
T KOG3920|consen  150 LGVTGYYIRVSLK  162 (193)
T ss_pred             eccceEEEehhHH
Confidence            8887765554443

>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A

Probab=84.98  E-value=7  Score=37.13  Aligned_cols=54  Identities=19%  Similarity=0.096  Sum_probs=38.5

Q ss_pred             EEEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCCc
Q 042478          653 TVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHK  707 (954)
Q Consensus       653 tv~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~  707 (954)
                      ..+.+++|....+.+|+++++.++|+.+......+++ ++|++.++.|.+..+..
T Consensus        34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~   87 (118)
T PF11614_consen   34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPD   87 (118)
T ss_dssp             EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred             EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence            3678899999999999999999889999655578888 68999999999998764

>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2

Probab=82.04  E-value=1.8  Score=43.48  Aligned_cols=45  Identities=9%  Similarity=0.080  Sum_probs=34.0

Q ss_pred             CCCcccccceEEEEecCCC-C----------------chHHHHHHHHHHcCceEEEEEecCC
Q 042478          376 SLNATLAAGKIILCFSRPD-T----------------QDIQSAAISVTQAGGVGLIYAQFHT  420 (954)
Q Consensus       376 ~~~~~~v~Gkivl~~~~~g-~----------------~~~~~k~~~~~~aGa~gvi~~n~~~  420 (954)
                      ++...|++||||++.++.. .                .....|...+.+.||.|+|++++..
T Consensus        42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~  103 (157)
T cd04821          42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE  103 (157)
T ss_pred             cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence            5567799999999986321 0                1234599999999999999998753

A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	954
3vta_A	621	Crystal Structure Of Cucumisin, A Subtilisin-Like E		2e-90
3i6s_A	649	Crystal Structure Of The Plant Subtilisin-Like Prot		1e-76
3bbo_K	224	Homology Model For The Spinach Chloroplast 50s Subu		1e-67
1jqm_A	139	Fitting Of L11 Protein And Elongation Factor G (Ef-		6e-46
1eg0_K	140	Fitting Of Components With Known Structure Into An		7e-46
1mms_A	140	Crystal Structure Of The Ribosomal Protein L11-Rna		7e-46
1mj1_L	141	Crystal Structure Of The Ribosome At 5.5 A Resoluti		8e-46
487d_L	133	Seven Ribosomal Proteins Fitted To A Cryo-Electron		8e-46
1r2w_A	141	Coordinates Of L11 With 58nts Of 23s Rrna Fitted In		2e-44
3fin_L	138	T. Thermophilus 70s Ribosome In Complex With Mrna,		4e-39
2j03_K	147	Structure Of The Thermus Thermophilus 70s Ribosome		4e-39
3cjr_B	147	Ribosomal Protein L11 Methyltransferase (prma) In C		2e-38
3cjq_B	146	Ribosomal Protein L11 Methyltransferase (Prma) In C		2e-38
1nkw_G	144	Crystal Structure Of The Large Ribosomal Subunit Fr		4e-38
1pnu_G	143	Crystal Structure Of A Streptomycin Dependent Ribos		4e-38
3egv_B	146	Ribosomal Protein L11 Methyltransferase (Prma) In C		5e-34
1p85_G	141	Real Space Refined Coordinates Of The 50s Subunit F		5e-33
2gya_G	139	Structure Of The 50s Subunit Of A Pre-Translocation		5e-33
1vs6_I	142	Crystal Structure Of The Bacterial Ribosome From Es		5e-33
2bcw_A	65	Coordinates Of The N-Terminal Domain Of Ribosomal P		8e-21
3j21_H	164	Promiscuous Behavior Of Proteins In Archaeal Riboso		4e-19
2ftc_G	145	Structural Model For The Large Subunit Of The Mamma		7e-19
1hc8_A	76	Crystal Structure Of A Conserved Ribosomal Protein-		2e-18
1y39_A	76	Co-Evolution Of Protein And Rna Structures Within A		2e-18
1aci_A	76	L11 Ribosomal Protein Rna Binding Domain, Nmr, 20 S		2e-17
2otj_I	161	13-Deoxytedanolide Bound To The Large Subunit Of Ha		2e-17
1s72_I	162	Refined Crystal Structure Of The Haloarcula Marismo		2e-17
3cjs_B	72	Minimal Recognition Complex Between Prma And Riboso		3e-17
1qa6_A	67	Crystal Structure Of A Conserved Ribosomal Protein-		5e-15
1wsd_A	269	Alkaline M-Protease Form I Crystal Strcuture Length		3e-11
1ah2_A	269	Serine Protease Pb92 From Bacillus Alcalophilus, Nm		1e-10
1ndu_A	269	Bacillus Lentus Subtilisin Variant S101gV104N Lengt		1e-10
1ndq_A	269	Bacillus Lentus Subtilisin Length = 269		1e-10
1c9j_A	269	Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A		1e-10
1st3_A	269	The Crystal Structure Of The Bacillus Lentus Alkali		1e-10
1iav_A	269	Structure On Native (Asn 87) Subtilisin From Bacill		4e-10
3afg_A	539	Crystal Structure Of Pron-Tk-Sp From Thermococcus K		4e-10
1c9n_A	269	Bacillus Lentus Substilisin Variant (Ser 87) K27rV1		4e-10
1c9m_A	269	Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L		5e-10
1q5p_A	269	S156e/s166d Variant Of Bacillus Lentus Subtilisin L		5e-10
3f49_S	266	Anion-Triggered Engineered Subtilisin Subt_bacam Le		5e-10
3eif_A	936	1.9 Angstrom Crystal Structure Of The Active Form O		6e-10
1sbi_A	275	Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f,		1e-09
3cnq_S	266	Prosubtilisin Substrate Complex Of Subtilisin Subt_		1e-09
1dui_A	266	Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr		1e-09
1sue_A	266	Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu		2e-09
1aqn_A	275	Subtilisin Mutant 8324 Length = 275		2e-09
1s01_A	275	Large Increases In General Stability For Subtilisin		2e-09
1spb_S	266	Subtilisin Bpn' Prosegment (77 Residues) Complexed		2e-09
1sua_A	266	Subtilisin Bpn' Length = 266		2e-09
1ak9_A	275	Subtilisin Mutant 8321 Length = 275		2e-09
1yjb_A	275	Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit		2e-09
2sni_E	275	Structural Comparison Of Two Serine Proteinase-Prot		2e-09
1lw6_E	281	Crystal Structure Of The Complex Of Subtilisin Bpn'		2e-09
1s02_A	275	Effects Of Engineered Salt Bridges On The Stability		3e-09
2sbt_A	275	A Comparison Of The Three-Dimensional Structures Of		3e-09
2sic_E	275	Refined Crystal Structure Of The Complex Of Subtili		3e-09
1sub_A	275	Calcium-Independent Subtilisin By Design Length = 2		3e-09
1a2q_A	275	Subtilisin Bpn' Mutant 7186 Length = 275		4e-09
1gnv_A	266	Calcium Independent Subtilisin Bpn' Mutant Length =		5e-09
1suc_A	275	Calcium-Independent Subtilisin By Design Length = 2		5e-09
1gns_A	263	Subtilisin Bpn' Length = 263		5e-09
1ubn_A	275	Selenosubtilisin Bpn Length = 275		7e-09
1v5i_A	275	Crystal Structure Of Serine Protease Inhibitor Poia		7e-09
1st2_A	275	The Three-Dimensional Structure Of Bacillus Amyloli		2e-08
1yu6_A	275	Crystal Structure Of The Subtilisin Carlsberg:omtky		3e-08
4gi3_A	275	Crystal Structure Of Greglin In Complex With Subtil		3e-08
3qtl_A	274	Structural Basis For Dual-Inhibition Mechanism Of A		3e-08
1cse_E	274	The High-Resolution X-Ray Crystal Structure Of The		3e-08
1c3l_A	274	Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L		4e-08
1scn_E	276	Inactivation Of Subtilisin Carlsberg By N-(Tert-But		4e-08
1sel_A	274	Crystal Structure Of Selenosubtilisin At 2.0-Angstr		1e-07
1dbi_A	280	Crystal Structure Of A Thermostable Serine Protease		1e-07
1mee_A	275	The Complex Between The Subtilisin From A Mesophili		2e-07
1bh6_A	274	Subtilisin Dy In Complex With The Synthetic Inhibit		6e-07
1thm_A	279	Crystal Structure Of Thermitase At 1.4 Angstroms Re		7e-07
1scj_A	275	Crystal Structure Of Subtilisin-Propeptide Complex		8e-07
4dww_A	275	Crystal Structure Of Nattokinase From Bacillus Subt		8e-07
3lpd_A	339	Crystal Structure Of A Subtilisin-Like Protease Len		2e-06
3lpc_A	340	Crystal Structure Of A Subtilisin-Like Protease Len		2e-06
3lpa_A	340	Crystal Structure Of A Subtilisin-Like Protease Len		2e-06
1xf1_A	926	Structure Of C5a Peptidase- A Key Virulence Factor		2e-06
1tec_E	279	Crystallographic Refinement By Incorporation Of Mol		2e-06
2e1p_A	398	Crystal Structure Of Pro-Tk-Subtilisin Length = 398		2e-06
2zwp_A	398	Crystal Structure Of Ca3 Site Mutant Of Pro-S324a L		2e-06
2zwo_A	398	Crystal Structure Of Ca2 Site Mutant Of Pro-S324a L		2e-06
2z2z_A	395	Crystal Structure Of Unautoprocessed Form Of Tk-sub		2e-06
2z30_A	320	Crystal Structure Of Complex Form Between Mat-Tk-Su		2e-06
3vhq_A	398	Crystal Structure Of The Ca6 Site Mutant Of Pro-Sa-		3e-06
2z56_A	318	Crystal Structure Of G56s-Propeptide:s324a-Subtilis		3e-06
2zrq_A	329	Crystal Structure Of S324a-Subtilisin Length = 329		3e-06
3a3p_A	329	Crystal Structure Of Complex Between E201aSA-Subtil		3e-06
2z2x_A	318	Crystal Structure Of Mature Form Of Tk-Subtilisin L		4e-06
2z2y_A	318	Crystal Structure Of Autoprocessed Form Of Tk-Subti		4e-06
3g4s_I	70	Co-Crystal Structure Of Tiamulin Bound To The Large		5e-06
2x8j_B	327	Intracellular Subtilisin Precursor From B. Clausii		1e-05
2x8j_A	327	Intracellular Subtilisin Precursor From B. Clausii		1e-05
2wv7_A	329	Intracellular Subtilisin Precursor From B. Clausii		2e-05
2xrm_A	311	Processed Intracellular Subtilisin From B. Clausii		2e-05
1wmd_A	434	Crystal Structure Of Alkaline Serine Protease Kp-43		3e-05
2gko_A	309	S41 Psychrophilic Protease Length = 309		7e-05
1ic6_A	279	Structure Of A Serine Protease Proteinase K From Tr		2e-04
1v6c_A	441	Crystal Structure Of Psychrophilic Subtilisin-like		4e-04
1wmf_A	434	Crystal Structure Of Alkaline Serine Protease Kp-43		5e-04
3lxu_X	1354	Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp I		7e-04
1s2n_A	284	Crystal Strucure Of A Cold Adapted Subtilisin-Like		9e-04

>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621

Iteration: 1
 Score =  330 bits (847), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 228/646 (35%), Positives = 323/646 (50%), Gaps = 74/646 (11%)
Query: 114 TTRSWEFMGLHYYQSSKNLSTESNMXXXXXXXXXXXXVWPESESFSDKGMGQAPVPPHWK 173
           TTRSW+F+G       ++   ESN+            +WPES SF D+G   +P PP WK
Sbjct: 1   TTRSWDFLGFPLTVPRRS-QVESNIVVGVLDTG----IWPESPSFDDEGF--SPPPPKWK 53
Query: 174 GICQKGEKFNSSNCNRKLIGARWF----------IKGIMDMINASTNTDEXXXXXXXXXX 223
           G C+    F    CNRK+IGAR +          + G  D     T+T            
Sbjct: 54  GTCETSNNFR---CNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQA 110
Query: 224 XXX-------------XXXXIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPL 270
                                YK CW+ GC+D D+L A+D AI DGVD++S+S+G   P 
Sbjct: 111 NLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPR 170
Query: 271 FSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTA 330
             ++D   +IAIGSFHA+ +GI   +SAGN GP   T  + +PW+++V A+T+DR F T 
Sbjct: 171 HYFVD---AIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQ 227
Query: 331 ITLGNHQVLWGQSIDIGKVSHGFTGLTYSERI---AFDPDSANDCRQGSLNATLAAGKII 387
           + +GN Q    Q + I    + +  L     I    FD  ++  C   S+N  L  GKI+
Sbjct: 228 VQIGNGQSF--QGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIV 285
Query: 388 LCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIR 447
           +C +     +   +       G  G++      D  DS  L P   ++       L YI 
Sbjct: 286 VCEASFGPHEFFKSL-----DGAAGVLMTSNTRDYADSYPL-PSSVLDPNDLLATLRYIY 339
Query: 448 RARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYP---P 504
             RSP A +    T++ +  +P V SFSSRGPN  +  V+KPDI  PGV+IL+A+P   P
Sbjct: 340 SIRSPGATIFKSTTIL-NASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAP 398
Query: 505 IGS-KDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNI 563
           +G  +    + ++SGTSMSCPH+ GIA  +K+ +  WSPAAI+SAL+TTAS      MN 
Sbjct: 399 VGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASP-----MN- 452
Query: 564 FEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSK 623
                   +A+ F  G GHVNP KA+ PGLVYD    DY++FLC  G+N  ++ R+T   
Sbjct: 453 ---ARFNPQAE-FAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDY 508
Query: 624 INCLKNN-HLALDLNLPSITI---PNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVN 679
             C   N     DLN PS  +   P+   N+     R +T+V    S Y A++ AP G+ 
Sbjct: 509 SACTSGNTGRVWDLNYPSFGLSVSPSQTFNQ--YFNRTLTSVAPQASTYRAMISAPQGLT 566
Query: 680 MTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTD 725
           ++V P V+SFN      SF +T   + K   V        SL W+D
Sbjct: 567 ISVNPNVLSFNGLGDRKSFTLTVRGSIKGFVVS------ASLVWSD 606

>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649

Iteration: 1
 Score =  285 bits (728), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 216/666 (32%), Positives = 338/666 (50%), Gaps = 91/666 (13%)
Query: 114 TTRSWEFMGLHYYQSSKNLSTESNMXXXXXXXXXXXXVWPESESFSDKGMGQAPVPPHWK 173
           TT + +F+ L+    S  L   S +            +WPES SF D GM +  +P  WK
Sbjct: 1   TTHTSDFLKLN---PSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPE--IPKRWK 55
Query: 174 GICQKGEKFNSSNCNRKLIGARWFIKGIMD-------MINASTNTDEXXXXXXXXXX--- 223
           GIC+ G +FN+S CNRKLIGA +F KGI+         +N++ +TD              
Sbjct: 56  GICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNF 115
Query: 224 -----------------XXXXXXXIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGN 266
                                   +YK  ++ G   +D++ A D+A+ DGVD++S+S G 
Sbjct: 116 AKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGY 175
Query: 267 E-IPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDR 325
             IPL+      D+I+I SF A+ KG+ V +SAGN GP   ++ N +PWI+ V +   DR
Sbjct: 176 RFIPLY-----EDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDR 230
Query: 326 AFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLA--A 383
            F   +TLGN   + G S+   +     + + Y++ ++       DC    L + +    
Sbjct: 231 TFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNKTLS-------DCSSEELLSQVENPE 283
Query: 384 GKIILCFSRPDTQDIQ--------SAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVN 435
             I++C    D  D           AAI +++  GV    A F           P + VN
Sbjct: 284 NTIVICDDNGDFSDQMRIITRARLKAAIFISEDPGV-FRSATFPN---------PGVVVN 333
Query: 436 YEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPG 495
            + G Q+++Y++ + +P A ++  ET +    +P VA+ S+RGP+     + KPDI+APG
Sbjct: 334 KKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPG 393
Query: 496 VDILSAYPP------IGSKDI--QGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRS 547
           V IL+AYPP      IG+  +    Y L SGTSM+ PH AGIAA++K+ H +WSP+AIRS
Sbjct: 394 VLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRS 453
Query: 548 ALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLC 607
           A++TTA         I ++    K A P D+G GHV+PN+A++PGLVYD T +DY+  LC
Sbjct: 454 AMMTTADPLDNTRKPI-KDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLC 512
Query: 608 FMGHNDASISRLTKSKI--NCLKNNHLALDLNLPS-ITIPNLHNNETV---TVTRKVTNV 661
            +   +     + +S    NC   ++ + DLN PS I + ++  N T+      R VTNV
Sbjct: 513 SLNFTEEQFKTIARSSASHNC---SNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNV 569
Query: 662 GQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPD--AEYRFG 719
           G+  + Y+A ++AP    ++V P+++ F    +  S+ +T      +  + D       G
Sbjct: 570 GKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLT------IRYIGDEGQSRNVG 623
Query: 720 SLTWTD 725
           S+TW +
Sbjct: 624 SITWVE 629

>pdb|3BBO|K Chain K, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 224

Iteration: 1
 Score =  254 bits (650), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/138 (87%), Positives = 132/138 (95%)
Query: 817 EAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTP 876
           EAGKATPAPPVGPALG+KGVNIMAFCKDYNARTADK G+VIPVEITV+DD+SFTFILKTP
Sbjct: 85  EAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGFVIPVEITVFDDKSFTFILKTP 144
Query: 877 PASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAA 936
           PASVLLLKA+G EKGSKDP+ +KVGKITI+QLR IATEKLPDLNCT+IESAMRIIAGTAA
Sbjct: 145 PASVLLLKASGAEKGSKDPQMEKVGKITIDQLRGIATEKLPDLNCTTIESAMRIIAGTAA 204
Query: 937 NMGIDIDPPVLETKKKEL 954
           NMGIDIDPP+L  KKKE+
Sbjct: 205 NMGIDIDPPILVKKKKEV 222

>pdb|1JQM|A Chain A, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G, Gdp And Fusidic Acid Length = 139

Iteration: 1
 Score =  182 bits (463), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 85/125 (68%), Positives = 105/125 (84%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
           AGKATPAPPVGPALG  GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KTPP
Sbjct: 14  AGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPP 73
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
           AS LL KAAG+EKGS +PK++ VGK+T +Q+  IA  K+PDLN  S+E+AM+II GTA +
Sbjct: 74  ASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKS 133
Query: 938 MGIDI 942
           MGI++
Sbjct: 134 MGIEV 138

>pdb|1MMS|A Chain A, Crystal Structure Of The Ribosomal Protein L11-Rna Complex Length = 140

Iteration: 1
 Score =  182 bits (462), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 85/125 (68%), Positives = 105/125 (84%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
           AGKATPAPPVGPALG  GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KTPP
Sbjct: 14  AGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPP 73
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
           AS LL KAAG+EKGS +PK++ VGK+T +Q+  IA  K+PDLN  S+E+AM+II GTA +
Sbjct: 74  ASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKS 133
Query: 938 MGIDI 942
           MGI++
Sbjct: 134 MGIEV 138

>pdb|1MJ1|L Chain L, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s Ribosome Length = 141

Iteration: 1
 Score =  182 bits (462), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 85/125 (68%), Positives = 105/125 (84%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
           AGKATPAPPVGPALG  GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KTPP
Sbjct: 15  AGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPP 74
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
           AS LL KAAG+EKGS +PK++ VGK+T +Q+  IA  K+PDLN  S+E+AM+II GTA +
Sbjct: 75  ASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKS 134
Query: 938 MGIDI 942
           MGI++
Sbjct: 135 MGIEV 139

>pdb|487D|L Chain L, Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution Length = 133

Iteration: 1
 Score =  182 bits (462), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 85/125 (68%), Positives = 105/125 (84%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
           AGKATPAPPVGPALG  GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KTPP
Sbjct: 8   AGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPP 67
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
           AS LL KAAG+EKGS +PK++ VGK+T +Q+  IA  K+PDLN  S+E+AM+II GTA +
Sbjct: 68  ASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKS 127
Query: 938 MGIDI 942
           MGI++
Sbjct: 128 MGIEV 132

>pdb|1R2W|A Chain A, Coordinates Of L11 With 58nts Of 23s Rrna Fitted Into The Cryo-Em Map Of The 70s Ribosome Length = 141

Iteration: 1
 Score =  177 bits (450), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/126 (67%), Positives = 105/126 (83%), Gaps = 1/126 (0%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKT-P 876
           AGKATPAPPVGPALG  GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KT P
Sbjct: 14  AGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTEP 73
Query: 877 PASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAA 936
           PAS LL KAAG+EKGS +PK++ VGK+T +Q+  IA  K+PDLN  S+E+AM+II GTA 
Sbjct: 74  PASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAK 133
Query: 937 NMGIDI 942
           +MGI++
Sbjct: 134 SMGIEV 139

>pdb|3FIN|L Chain L, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 138

Iteration: 1
 Score =  160 bits (405), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 76/125 (60%), Positives = 99/125 (79%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
           AGKATPAPPVGPALG  G NIM F K +NA TA+    ++PVEIT+Y DRSFTF+ KTPP
Sbjct: 13  AGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTPP 72
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
           AS L+ KAAG+EKG+  P ++KVG+IT EQ+  IA +K+PDLN T +E+A R+IAG+A +
Sbjct: 73  ASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARS 132
Query: 938 MGIDI 942
           MG+++
Sbjct: 133 MGVEV 137

>pdb|3CJR|B Chain B, Ribosomal Protein L11 Methyltransferase (prma) In Complex With Ribosomal Protein L11 (k39a) And Inhibitor Sinefungin Length = 147

Iteration: 1
 Score =  157 bits (398), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/125 (60%), Positives = 98/125 (78%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
           AGKATPAPPVGPALG  G NIM F   +NA TA+    ++PVEIT+Y DRSFTF+ KTPP
Sbjct: 14  AGKATPAPPVGPALGQHGANIMEFVAAFNAATANMGDAIVPVEITIYADRSFTFVTKTPP 73
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
           AS L+ KAAG+EKG+  P ++KVG+IT EQ+  IA +K+PDLN T +E+A R+IAG+A +
Sbjct: 74  ASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARS 133
Query: 938 MGIDI 942
           MG+++
Sbjct: 134 MGVEV 138

>pdb|3CJQ|B Chain B, Ribosomal Protein L11 Methyltransferase (Prma) In Complex With Dimethylated Ribosomal Protein L11 In Space Group P212121 Length = 146

Iteration: 1
 Score =  157 bits (398), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/125 (60%), Positives = 98/125 (78%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
           AGKATPAPPVGPALG  G NIM F   +NA TA+    ++PVEIT+Y DRSFTF+ KTPP
Sbjct: 13  AGKATPAPPVGPALGQHGANIMEFVAAFNAATANMGDAIVPVEITIYADRSFTFVTKTPP 72
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
           AS L+ KAAG+EKG+  P ++KVG+IT EQ+  IA +K+PDLN T +E+A R+IAG+A +
Sbjct: 73  ASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARS 132
Query: 938 MGIDI 942
           MG+++
Sbjct: 133 MGVEV 137

>pdb|1NKW|G Chain G, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 144

Iteration: 1
 Score =  157 bits (396), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 76/126 (60%), Positives = 94/126 (74%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
           AGKATPAPPVGPALG  G NIM F K +NA+TADK   +IPVEIT+Y DRSFTFI KTPP
Sbjct: 14  AGKATPAPPVGPALGQYGANIMEFTKAFNAQTADKGDAIIPVEITIYADRSFTFITKTPP 73
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
            S L+ KAAG+ KGS  P + KVGK+  +Q+  IA  K+PDLN  S+E+A   +AGTA +
Sbjct: 74  MSYLIRKAAGIGKGSSTPNKAKVGKLNWDQVLEIAKTKMPDLNAGSVEAAANTVAGTARS 133
Query: 938 MGIDID 943
           MG+ ++
Sbjct: 134 MGVTVE 139

>pdb|1PNU|G Chain G, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 143

Iteration: 1
 Score =  156 bits (395), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 76/126 (60%), Positives = 94/126 (74%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
           AGKATPAPPVGPALG  G NIM F K +NA+TADK   +IPVEIT+Y DRSFTFI KTPP
Sbjct: 14  AGKATPAPPVGPALGQYGANIMEFTKAFNAQTADKGDAIIPVEITIYADRSFTFITKTPP 73
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
            S L+ KAAG+ KGS  P + KVGK+  +Q+  IA  K+PDLN  S+E+A   +AGTA +
Sbjct: 74  MSYLIRKAAGIGKGSSTPNKAKVGKLNWDQVLEIAKTKMPDLNAGSVEAAANTVAGTARS 133
Query: 938 MGIDID 943
           MG+ ++
Sbjct: 134 MGVTVE 139

>pdb|3EGV|B Chain B, Ribosomal Protein L11 Methyltransferase (Prma) In Complex With Trimethylated Ribosomal Protein L11 Length = 146

Iteration: 1
 Score =  143 bits (360), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 67/116 (57%), Positives = 90/116 (77%)
Query: 827 VGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAA 886
           VGPALG  G NIM F K +NA TA+    ++PVEIT+Y DRSFTF+ KTPPAS L+ KAA
Sbjct: 22  VGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTPPASYLIRKAA 81
Query: 887 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 942
           G+EKG+  P ++KVG+IT EQ+  IA +K+PDLN T +E+A R+IAG+A +MG+++
Sbjct: 82  GLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARSMGVEV 137

>pdb|1P85|G Chain G, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 141

Iteration: 1
 Score =  140 bits (352), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 72/127 (56%), Positives = 91/127 (71%), Gaps = 1/127 (0%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNART-ADKAGYVIPVEITVYDDRSFTFILKTP 876
           AG A P+PPVGPALG +GVNIM FCK +NA+T + + G  IPV ITVY DRSFTF+ KTP
Sbjct: 14  AGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTP 73
Query: 877 PASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAA 936
           PA+VLL KAAG++ GS  P + KVGKI+  QL+ IA  K  D+    IE+  R I GTA 
Sbjct: 74  PAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTAR 133
Query: 937 NMGIDID 943
           +MG+ ++
Sbjct: 134 SMGLVVE 140

>pdb|2GYA|G Chain G, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 139

Iteration: 1
 Score =  140 bits (352), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 72/127 (56%), Positives = 91/127 (71%), Gaps = 1/127 (0%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNART-ADKAGYVIPVEITVYDDRSFTFILKTP 876
           AG A P+PPVGPALG +GVNIM FCK +NA+T + + G  IPV ITVY DRSFTF+ KTP
Sbjct: 13  AGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTP 72
Query: 877 PASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAA 936
           PA+VLL KAAG++ GS  P + KVGKI+  QL+ IA  K  D+    IE+  R I GTA 
Sbjct: 73  PAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTAR 132
Query: 937 NMGIDID 943
           +MG+ ++
Sbjct: 133 SMGLVVE 139

>pdb|1VS6|I Chain I, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 142

Iteration: 1
 Score =  139 bits (351), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 72/127 (56%), Positives = 91/127 (71%), Gaps = 1/127 (0%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNART-ADKAGYVIPVEITVYDDRSFTFILKTP 876
           AG A P+PPVGPALG +GVNIM FCK +NA+T + + G  IPV ITVY DRSFTF+ KTP
Sbjct: 15  AGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTP 74
Query: 877 PASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAA 936
           PA+VLL KAAG++ GS  P + KVGKI+  QL+ IA  K  D+    IE+  R I GTA 
Sbjct: 75  PAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTAR 134
Query: 937 NMGIDID 943
           +MG+ ++
Sbjct: 135 SMGLVVE 141

>pdb|2BCW|A Chain A, Coordinates Of The N-Terminal Domain Of Ribosomal Protein L11,C-Terminal Domain Of Ribosomal Protein L7L12 AND A Portion Of The G' Domain Of Elongation Factor G, As Fitted Into Cryo-Em Map Of An Escherichia Coli 70sEf- GGdpFusidic Acid Complex Length = 65

Iteration: 1
 Score = 99.4 bits (246), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 45/58 (77%), Positives = 51/58 (87%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKT 875
           AGKATPAPPVGPALG  GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KT
Sbjct: 8   AGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKT 65

>pdb|3J21|H Chain H, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 164

Iteration: 1
 Score = 93.6 bits (231), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/128 (39%), Positives = 75/128 (58%), Gaps = 1/128 (0%)
Query: 817 EAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYD-DRSFTFILKT 875
           E GKATP PP+GPA+G  G+N+       N  T D AG  +PV+I V    + F   +  
Sbjct: 11  EGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKDFAGMQVPVKIIVDPVTKQFEIEVGV 70
Query: 876 PPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTA 935
           PP S L+ K  G+EKGS +PK   VG +T+EQ+  IA  K   +   ++++A + + GTA
Sbjct: 71  PPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKKDQMLALTLKAAAKEVIGTA 130
Query: 936 ANMGIDID 943
            +MG+ ++
Sbjct: 131 LSMGVTVE 138

>pdb|2FTC|G Chain G, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 145

Iteration: 1
 Score = 92.8 bits (229), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/130 (39%), Positives = 75/130 (57%), Gaps = 5/130 (3%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVYDDRSFTFILKTP 876
           AG A P PP+GP LG +GV+I  FCK++N RT D K G  +P +I V  DR+F   +  P
Sbjct: 14  AGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQP 73
Query: 877 PASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPD----LNCTSIESAMRIIA 932
             S  L  AAG+EKG++   ++  G +T++ +  IA  K  D    L    + S +R I 
Sbjct: 74  TVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSII 133
Query: 933 GTAANMGIDI 942
           G+A ++GI +
Sbjct: 134 GSARSLGIRV 143

>pdb|1HC8|A Chain A, Crystal Structure Of A Conserved Ribosomal Protein-Rna Complex Length = 76

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 57/75 (76%)
Query: 869 FTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAM 928
           FTFI KTPPA+VLL KAAG+E GS +P + KV  I  +++R IA  K+PDLN  SIE+AM
Sbjct: 1   FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAM 60
Query: 929 RIIAGTAANMGIDID 943
           R+I GTA +MGI ++
Sbjct: 61  RMIEGTARSMGIVVE 75

>pdb|1Y39|A Chain A, Co-Evolution Of Protein And Rna Structures Within A Highly Conserved Ribosomal Domain Length = 76

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/75 (60%), Positives = 57/75 (76%)
Query: 869 FTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAM 928
           FTFI KTPPA+VLL KAAG+E GS +P + KV  I  +++R IA  K+PDLN  SIE+AM
Sbjct: 1   FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAM 60
Query: 929 RIIAGTAANMGIDID 943
           R+I GTA NMGI ++
Sbjct: 61  RMIEGTARNMGIVVE 75

>pdb|1ACI|A Chain A, L11 Ribosomal Protein Rna Binding Domain, Nmr, 20 Structures Length = 76

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 56/75 (74%)
Query: 869 FTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAM 928
            TFI KTPPA+VLL KAAG+E GS +P + KV  I  +++R IA  K+PDLN  SIE+AM
Sbjct: 1   MTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAM 60
Query: 929 RIIAGTAANMGIDID 943
           R+I GTA +MGI ++
Sbjct: 61  RMIEGTARSMGIVVE 75

>pdb|2OTJ|I Chain I, 13-Deoxytedanolide Bound To The Large Subunit Of Haloarcula Marismortui Length = 161

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 73/126 (57%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
            G+A P PP+GP LG   V++ A  ++ N +TA   G  +PV +   DD SF   +  PP
Sbjct: 10  GGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAFDGTEVPVTVKYDDDGSFEIEVGVPP 69
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
            + L+   AG E GS +P++  V  ++++Q++ IA +K PDL    + +A + + GT  +
Sbjct: 70  TAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTS 129
Query: 938 MGIDID 943
           +G+ I+
Sbjct: 130 LGVTIE 135

>pdb|1S72|I Chain I, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 162

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 73/126 (57%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
            G+A P PP+GP LG   V++ A  ++ N +TA   G  +PV +   DD SF   +  PP
Sbjct: 11  GGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAFDGTEVPVTVKYDDDGSFEIEVGVPP 70
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
            + L+   AG E GS +P++  V  ++++Q++ IA +K PDL    + +A + + GT  +
Sbjct: 71  TAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTS 130
Query: 938 MGIDID 943
           +G+ I+
Sbjct: 131 LGVTIE 136

>pdb|3CJS|B Chain B, Minimal Recognition Complex Between Prma And Ribosomal Protein L11 Length = 72

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 46/59 (77%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTP 876
           AGKATPAPPVGPALG  G NIM F K +NA TA+    ++PVEIT+Y DRSFTF+ KTP
Sbjct: 14  AGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTP 72

>pdb|1QA6|A Chain A, Crystal Structure Of A Conserved Ribosomal Protein-Rna Complex Length = 67

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/67 (59%), Positives = 51/67 (76%)
Query: 874 KTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAG 933
           KTPPA+VLL KAAG+E GS +P + KV  I  +++R IA  K+PDLN  SIE+AMR+I G
Sbjct: 1   KTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEG 60
Query: 934 TAANMGI 940
           TA +MGI
Sbjct: 61  TARSMGI 67

>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
           DIVAPGV++ S YP  GS     YA L+GTSM+ PHVAG+AAL+K  +  WS   IR+ L
Sbjct: 191 DIVAPGVNVQSTYP--GST----YASLNGTSMATPHVAGVAALVKQKNPSWSNVQIRNHL 244
Query: 550 VTTASQTGTDGMNIFEEGSTRKEA 573
             TA  TG    N++  G    EA
Sbjct: 245 KNTA--TGLGNTNLYGSGLVNAEA 266

>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
           DIVAPGV++ S YP  GS     YA L+GTSM+ PHVAG AAL+K  +  WS   IR+ L
Sbjct: 191 DIVAPGVNVQSTYP--GST----YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 550 VTTASQTGTDGMNIFEEGSTRKEA 573
             TA+  G+   N++  G    EA
Sbjct: 245 KNTATSLGS--TNLYGSGLVNAEA 266

>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
           DIVAPGV++ S YP  GS     YA L+GTSM+ PHVAG AAL+K  +  WS   IR+ L
Sbjct: 191 DIVAPGVNVQSTYP--GST----YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 550 VTTASQTGTDGMNIFEEGSTRKEA 573
             TA+  G+   N++  G    EA
Sbjct: 245 KNTATSLGS--TNLYGSGLVNAEA 266

>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
           DIVAPGV++ S YP  GS     YA L+GTSM+ PHVAG AAL+K  +  WS   IR+ L
Sbjct: 191 DIVAPGVNVQSTYP--GST----YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 550 VTTASQTGTDGMNIFEEGSTRKEA 573
             TA+  G+   N++  G    EA
Sbjct: 245 KNTATSLGS--TNLYGSGLVNAEA 266

>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
           DIVAPGV++ S YP  GS     YA L+GTSM+ PHVAG AAL+K  +  WS   IR+ L
Sbjct: 191 DIVAPGVNVQSTYP--GST----YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 550 VTTASQTGTDGMNIFEEGSTRKEA 573
             TA+  G+   N++  G    EA
Sbjct: 245 KNTATSLGS--TNLYGSGLVNAEA 266

>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
           DIVAPGV++ S YP  GS     YA L+GTSM+ PHVAG AAL+K  +  WS   IR+ L
Sbjct: 191 DIVAPGVNVQSTYP--GST----YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 550 VTTASQTGTDGMNIFEEGSTRKEA 573
             TA+  G+   N++  G    EA
Sbjct: 245 KNTATSLGS--TNLYGSGLVNAEA 266

>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
           DIVAPGV++ S YP  GS     YA L+GT M+ PHVAG AAL+K  +  WS   IR+ L
Sbjct: 191 DIVAPGVNVQSTYP--GST----YASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 550 VTTASQTGTDGMNIFEEGSTRKEA 573
             TA+  G+   N++  G    EA
Sbjct: 245 KNTATSLGS--TNLYGSGLVNAEA 266

>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 471 VASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPP---IGSKDIQGYALLSGTSMSCPHVA 527
           +  FSSRGP + +   LKP++VAPG  I++A      +G      Y    GT+M+ PHVA
Sbjct: 309 ITDFSSRGPTADNR--LKPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHVA 366
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEA 573
           GIAAL+   H  W+P  +++AL+ TA     D +     G+ R  A
Sbjct: 367 GIAALLLQAHPSWTPDKVKTALIETADIVKPDEIADIAYGAGRVNA 412

>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
           DIVAPGV++ S YP  GS     YA L+GT M+ PHVAG AAL+K  +  WS   IR+ L
Sbjct: 191 DIVAPGVNVQSTYP--GST----YASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 550 VTTASQTGTDGMNIFEEGSTRKEA 573
             TA+  G+   N++  G    EA
Sbjct: 245 KNTATSLGS--TNLYGSGLVNAEA 266

>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
           DIVAPGV++ S YP  GS     YA L+GT M+ PHVAG AAL+K  +  WS   IR+ L
Sbjct: 191 DIVAPGVNVQSTYP--GST----YASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 550 VTTASQTGTDGMNIFEEGSTRKEA 573
             TA+  G+   N++  G    EA
Sbjct: 245 KNTATSLGS--TNLYGSGLVNAEA 266

>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
           DIVAPGV++ S YP  GS     YA L+GT M+ PHVAG AAL+K  +  WS   IR+ L
Sbjct: 191 DIVAPGVNVQSTYP--GST----YASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 550 VTTASQTGTDGMNIFEEGSTRKEA 573
             TA+  G+   N++  G    EA
Sbjct: 245 KNTATSLGS--TNLYGSGLVNAEA 266

>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + A FSS GP        + D++APGV I S  P  G K    Y  LSGTSM+ PHVA
Sbjct: 174 SNQRAPFSSVGP--------ELDVMAPGVSICSTLP--GGK----YGALSGTSMASPHVA 219
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  TA++ G
Sbjct: 220 GAAALILSKHPNWTNTQVRSSLENTATKLG 249

>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 154/376 (40%), Gaps = 61/376 (16%)
Query: 243 ADVLKAFDKAIHDGVD----VLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSA 298
           AD  + + +AI D V+    V+++S GN     +Y +  D       +A +KG+++V+SA
Sbjct: 140 ADYARNYAQAIRDAVNLGAKVINMSFGN--AALAYANLPDETKKAFDYAKSKGVSIVTSA 197
Query: 299 GNDG--------PVAQT----IVNT---APWIITVGATTIDRAFPTAITL--GNHQ---- 337
           GND         P+A      +V T   A   +TV + + D+      T+   +HQ    
Sbjct: 198 GNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTDDHQAKEM 257
Query: 338 -VLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQ 396
            VL     +  K         Y+ R     D   D +          GKI L   R D  
Sbjct: 258 PVLSTNRFEPNKAYD----YAYANR-GMKEDDFKDVK----------GKIALI-ERGDI- 300
Query: 397 DIQSAAISVTQAGGVGLIYAQFHTDG----LDSCNLIPCIKVNYEVGTQILSYIRRARSP 452
           D +    +  +AG VG++       G    L + + +P   ++ + G   L     ++  
Sbjct: 301 DFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG---LLLKDNSKKT 357
Query: 453 IAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQG 512
           I   ++P+ V+      +++ FSS G    +   +KPDI APG DILS+           
Sbjct: 358 ITFNATPK-VLPTASDTKLSRFSSWG--LTADGNIKPDIAAPGQDILSSVAN------NK 408
Query: 513 YALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKE 572
           YA LSGTSMS P VAGI  L++  +    P    S  +  A +          +   +  
Sbjct: 409 YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAY 468
Query: 573 ADPFDIGGGHVNPNKA 588
             P   G G V+  KA
Sbjct: 469 FSPRQQGAGAVDAKKA 484

>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I S  P  G+K    Y   SGTSM+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIXSTLP--GNK----YGAYSGTSMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258

>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + A FSS GP        + D++APGV I S  P  G K    Y  LSGT+M+ PHVA
Sbjct: 174 SNQRAPFSSVGP--------ELDVMAPGVSICSTLP--GGK----YGALSGTAMASPHVA 219
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  TA++ G
Sbjct: 220 GAAALILSKHPNWTNTQVRSSLENTATKLG 249

>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I S  P  G+K    Y   SGTSM+ PHVA
Sbjct: 174 SNQRASFSSVGP--------ELDVMAPGVSICSTLP--GNK----YGAKSGTSMASPHVA 219
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 220 GAAALILSKHPNWTNTQVRSSLENTTTKLG 249

>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I S  P  G+K    Y   SGTSM+ PHVA
Sbjct: 174 SNQRASFSSVGP--------ELDVMAPGVSICSTLP--GNK----YGAKSGTSMASPHVA 219
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 220 GAAALILSKHPNWTNTQVRSSLENTTTKLG 249

>pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I S  P  G+K    Y   SGTSM+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSICSTLP--GNK----YGAKSGTSMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258

>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I S  P  G+K    Y   SGTSM+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSICSTLP--GNK----YGAKSGTSMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258

>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 54/90 (60%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I+S  P  G+K    Y   SGT+M+ PHVA
Sbjct: 174 SNQRASFSSVGP--------ELDVMAPGVSIVSTLP--GNK----YGAKSGTAMASPHVA 219
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 220 GAAALILSKHPNWTNTQVRSSLENTTTKLG 249

>pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 54/90 (60%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I+S  P  G+K    Y   SGT+M+ PHVA
Sbjct: 174 SNQRASFSSVGP--------ELDVMAPGVSIVSTLP--GNK----YGAKSGTAMASPHVA 219
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 220 GAAALILSKHPNWTNTQVRSSLENTTTKLG 249

>pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I S  P  G+K    Y   SGTSM+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAKSGTSMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258

>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I S  P  G+K    Y   SGTSM+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIXSTLP--GNK----YGAYSGTSMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T +  G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTYLG 258

>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I S  P  G+K    Y   +GTSM+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAYNGTSMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLQNTTTKLG 258

>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I S  P  G+K    Y   +GTSM+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAYNGTSMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258

>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I S  P  G+K    Y   +GTSM+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAYNGTSMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258

>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I S  P  G+K    Y   +GTSM+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAYNGTSMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLQNTTTKLG 258

>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I S  P  G+K    Y   +GTSM+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAYNGTSMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258

>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I S  P  G+K    Y   SGT M+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAYSGTXMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258

>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I S  P  G+K    Y   SGT M+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAYSGTXMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258

>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I S  P  G+K    Y   SGT M+ PHVA
Sbjct: 174 SNQRASFSSVGP--------ELDVMAPGVSICSTLP--GNK----YGAKSGTXMASPHVA 219
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 220 GAAALILSKHPNWTNTQVRSSLENTTTKLG 249

>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I S  P  G+K    Y   SGT M+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAKSGTXMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258

>pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I S  P  G+K    Y   SGT M+ PHVA
Sbjct: 171 SNQRASFSSVGP--------ELDVMAPGVSIWSTLP--GNK----YGAKSGTXMASPHVA 216
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 217 GAAALILSKHPNWTNTQVRSSLENTTTKLG 246

>pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I S  P  G+K    Y   +GT M+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAYNGTXMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258

>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I S  P  G+K    Y   +GT M+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAYNGTXMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258

>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS GP        + D++APGV I S  P  G+K    Y   +GTS + PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAYNGTSXASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H +W+   +RS+L  T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258

>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 14/87 (16%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
           ASFSS G         + +++APG  + S YP         YA L+GTSM+ PHVAG AA
Sbjct: 187 ASFSSVGA--------ELEVMAPGAGVYSTYP------TNTYATLNGTSMASPHVAGAAA 232
Query: 532 LIKSLHRDWSPAAIRSALVTTASQTGT 558
           LI S H + S + +R+ L +TA+  G+
Sbjct: 233 LILSKHPNLSASQVRNRLSSTATYLGS 259

>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 14/87 (16%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
           ASFSS G         + +++APG  + S YP         YA L+GTSM+ PHVAG AA
Sbjct: 187 ASFSSVGA--------ELEVMAPGAGVYSTYP------TNTYATLNGTSMASPHVAGAAA 232
Query: 532 LIKSLHRDWSPAAIRSALVTTASQTGT 558
           LI S H + S + +R+ L +TA+  G+
Sbjct: 233 LILSKHPNLSASQVRNRLSSTATYLGS 259

>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 14/87 (16%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
           ASFSS G         + +++APG  + S YP         YA L+GTSM+ PHVAG AA
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYP------TNTYATLNGTSMASPHVAGAAA 231
Query: 532 LIKSLHRDWSPAAIRSALVTTASQTGT 558
           LI S H + S + +R+ L +TA+  G+
Sbjct: 232 LILSKHPNLSASQVRNRLSSTATYLGS 258

>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 14/87 (16%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
           ASFSS G         + +++APG  + S YP         YA L+GTSM+ PHVAG AA
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYP------TNTYATLNGTSMASPHVAGAAA 231
Query: 532 LIKSLHRDWSPAAIRSALVTTASQTGT 558
           LI S H + S + +R+ L +TA+  G+
Sbjct: 232 LILSKHPNLSASQVRNRLSSTATYLGS 258

>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 14/87 (16%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
           ASFSS G         + +++APG  + S YP         YA L+GTSM+ PHVAG AA
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYP------TNTYATLNGTSMASPHVAGAAA 231
Query: 532 LIKSLHRDWSPAAIRSALVTTASQTGT 558
           LI S H + S + +R+ L +TA+  G+
Sbjct: 232 LILSKHPNLSASQVRNRLSSTATYLGS 258

>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 14/87 (16%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
           ASFSS G         + +++APG  + S YP         YA L+GTSM+ PHVAG AA
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYP------TNTYATLNGTSMASPHVAGAAA 231
Query: 532 LIKSLHRDWSPAAIRSALVTTASQTGT 558
           LI S H + S + +R+ L +TA+  G+
Sbjct: 232 LILSKHPNLSASQVRNRLSSTATYLGS 258

>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms Resolution Length = 274

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 14/87 (16%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
           ASFSS G         + +++APG  + S YP         YA L+GT M+ PHVAG AA
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYP------TNTYATLNGTXMASPHVAGAAA 231
Query: 532 LIKSLHRDWSPAAIRSALVTTASQTGT 558
           LI S H + S + +R+ L +TA+  G+
Sbjct: 232 LILSKHPNLSASQVRNRLSSTATYLGS 258

>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease Length = 280

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 54/92 (58%), Gaps = 19/92 (20%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
           R+ASFS+ G           D+VAPGVDI+S     G++    YA +SGTSM+ PHVAG+
Sbjct: 190 RLASFSNYGT--------WVDVVAPGVDIVS--TITGNR----YAYMSGTSMASPHVAGL 235
Query: 530 AALIKSLHRDWSPAAIRSALVTTA---SQTGT 558
           AAL+ S  R+     IR A+  TA   S TGT
Sbjct: 236 AALLASQGRN--NIEIRQAIEQTADKISGTGT 265

>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 47/87 (54%), Gaps = 14/87 (16%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
           ASFSS G         + D++APGV I S  P         Y   +GTSM+ PHVAG AA
Sbjct: 187 ASFSSAGS--------ELDVMAPGVSIQSTLPG------GTYGAYNGTSMATPHVAGAAA 232
Query: 532 LIKSLHRDWSPAAIRSALVTTASQTGT 558
           LI S H  W+ A +R  L +TA+  G+
Sbjct: 233 LILSKHPTWTNAQVRDRLESTATYLGS 259

>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 14/86 (16%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
           ASFSS G         + +++APGV + S YP         Y  L+GTSM+ PHVAG AA
Sbjct: 186 ASFSSVGS--------ELEVMAPGVSVYSTYPS------NTYTSLNGTSMASPHVAGAAA 231
Query: 532 LIKSLHRDWSPAAIRSALVTTASQTG 557
           LI S +   S + +R+ L +TA+  G
Sbjct: 232 LILSKYPTLSASQVRNRLSSTATNLG 257

>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms Resolution Length = 279

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 42/72 (58%), Gaps = 11/72 (15%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
           D+ APG  I S YP         YA LSGTSM+ PHVAG+A L+ S  R  S + IR+A+
Sbjct: 201 DVAAPGSSIYSTYP------TSTYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAI 252
Query: 550 VTTA---SQTGT 558
             TA   S TGT
Sbjct: 253 ENTADKISGTGT 264

>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 47/90 (52%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS G         + D++APGV I S  P         Y   +GT M+ PHVA
Sbjct: 183 SNQRASFSSAGS--------ELDVMAPGVSIQSTLPG------GTYGAYNGTCMATPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H  W+ A +R  L +TA+  G
Sbjct: 229 GAAALILSKHPTWTNAQVRDRLESTATYLG 258

>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 47/90 (52%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
           S + ASFSS G         + D++APGV I S  P         Y   +GT M+ PHVA
Sbjct: 183 SNQRASFSSVGS--------ELDVMAPGVSIQSTLPG------GTYGAYNGTXMATPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
           G AALI S H  W+ A +R  L +TA+  G
Sbjct: 229 GAAALILSKHPTWTNAQVRDRLESTATYLG 258

>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 339

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Query: 471 VASFSSRGPN-SMSPAVLKPDIVAPGVDILSAYPPIGSKDI-QGYALLSGTSMSCPHVAG 528
           V + +SRG   S S   +  D+ APG DILS       + +   Y+ ++GTSM+ PHV+G
Sbjct: 225 VGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGTRRPVSDAYSFMAGTSMATPHVSG 284
Query: 529 IAALI----KSLHRDWSPAAIRSALVTTAS 554
           +AAL+     S++++ +PA ++  LV+T S
Sbjct: 285 VAALVISAANSVNKNLTPAELKDVLVSTTS 314

>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Query: 471 VASFSSRGPN-SMSPAVLKPDIVAPGVDILSAYPPIGSKDI-QGYALLSGTSMSCPHVAG 528
           V + +SRG   S S   +  D+ APG DILS       + +   Y+ ++GTSM+ PHV+G
Sbjct: 225 VGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGTRRPVSDAYSFMAGTSMATPHVSG 284
Query: 529 IAALI----KSLHRDWSPAAIRSALVTTAS 554
           +AAL+     S++++ +PA ++  LV+T S
Sbjct: 285 VAALVISAANSVNKNLTPAELKDVLVSTTS 314

>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Query: 471 VASFSSRGPN-SMSPAVLKPDIVAPGVDILSAYPPIGSKDI-QGYALLSGTSMSCPHVAG 528
           V + +SRG   S S   +  D+ APG DILS       + +   Y+ ++GTSM+ PHV+G
Sbjct: 225 VGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGTRRPVSDAYSFMAGTSMATPHVSG 284
Query: 529 IAALI----KSLHRDWSPAAIRSALVTTAS 554
           +AAL+     S++++ +PA ++  LV+T S
Sbjct: 285 VAALVISAANSVNKNLTPAELKDVLVSTTS 314

>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From Streptococcus Length = 926

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 142/369 (38%), Gaps = 47/369 (12%)
Query: 243 ADVLKAFDKAIHD----GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSA 298
           AD  + + +AI D    G  V++ S GN     +Y +  D       +A +KG+++V+SA
Sbjct: 131 ADYARNYAQAIRDAINLGAKVINXSFGN--AALAYANLPDETKKAFDYAKSKGVSIVTSA 188
Query: 299 GND----GPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFT 354
           GND    G     + +   + +       D     A    + Q+     +          
Sbjct: 189 GNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDKEX 248
Query: 355 GLTYSERIAFDPDSAND---CRQGSLNATL--AAGKIILCFSRPDTQDIQSAAISVTQAG 409
            +  + R  F+P+ A D     +G+         GKI L   R D  D +       +AG
Sbjct: 249 PVLSTNR--FEPNKAYDYAYANRGTKEDDFKDVKGKIALI-ERGDI-DFKDKIAKAKKAG 304
Query: 410 GVG-LIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVS 468
            VG LIY     D  D    I    V+        ++I R    + K  +P+  I    +
Sbjct: 305 AVGVLIY-----DNQDKGFPIELPNVDQXPA----AFISRKDGLLLK-DNPQKTITFNAT 354
Query: 469 PRV---------ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGT 519
           P+V         + FSS G    +   +KPDI APG DILS+           YA LSGT
Sbjct: 355 PKVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILSSVAN------NKYAKLSGT 406
Query: 520 SMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIG 579
           S S P VAGI  L++  +    P    S  +  A +          +   +    P   G
Sbjct: 407 SXSAPLVAGIXGLLQKQYETQYPDXTPSERLDLAKKVLXSSATALYDEDEKAYFSPRQQG 466
Query: 580 GGHVNPNKA 588
            G V+  KA
Sbjct: 467 AGAVDAKKA 475

>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular Dynamics. The Thermostable Serine Protease Thermitase Complexed With Eglin-C Length = 279

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 42/72 (58%), Gaps = 11/72 (15%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
           D+ APG  I S YP         YA LSGTSM+ PHVAG+A L+ S  R  S + IR+A+
Sbjct: 201 DVAAPGSWIYSTYP------TSTYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAI 252
Query: 550 VTTA---SQTGT 558
             TA   S TGT
Sbjct: 253 ENTADKISGTGT 264

>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin Length = 398

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 33/156 (21%)
Query: 424 DSCNLIPCIKVNYEVGTQIL--SYIRRARSPIAKLSSPETV-IGDLVS-PRVASFSSRGP 479
           D   L   I   Y  G  I+  S    A SP    + PE + +G + S   +ASFS+R  
Sbjct: 240 DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNR-- 297
Query: 480 NSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH-- 537
                   +P++ APGVDILS YP         Y  L GT+M+ PHV+G+ ALI++ +  
Sbjct: 298 --------QPEVSAPGVDILSTYPD------DSYETLMGTAMATPHVSGVVALIQAAYYQ 343
Query: 538 -----------RDWSPAAIRSALVTTASQTGTDGMN 562
                       D S   +R  L  TA   G  G +
Sbjct: 344 KYGKILPVGTFDDISKNTVRGILHITADDLGPTGWD 379

>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a Length = 398

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 33/156 (21%)
Query: 424 DSCNLIPCIKVNYEVGTQIL--SYIRRARSPIAKLSSPETV-IGDLVS-PRVASFSSRGP 479
           D   L   I   Y  G  I+  S    A SP    + PE + +G + S   +ASFS+R  
Sbjct: 240 DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNR-- 297
Query: 480 NSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH-- 537
                   +P++ APGVDILS YP         Y  L GT+M+ PHV+G+ ALI++ +  
Sbjct: 298 --------QPEVSAPGVDILSTYPD------DSYETLMGTAMATPHVSGVVALIQAAYYQ 343
Query: 538 -----------RDWSPAAIRSALVTTASQTGTDGMN 562
                       D S   +R  L  TA   G  G +
Sbjct: 344 KYGKILPVGTFDDISKNTVRGILHITADDLGPTGWD 379

>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a Length = 398

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 33/156 (21%)
Query: 424 DSCNLIPCIKVNYEVGTQIL--SYIRRARSPIAKLSSPETV-IGDLVS-PRVASFSSRGP 479
           D   L   I   Y  G  I+  S    A SP    + PE + +G + S   +ASFS+R  
Sbjct: 240 DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNR-- 297
Query: 480 NSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH-- 537
                   +P++ APGVDILS YP         Y  L GT+M+ PHV+G+ ALI++ +  
Sbjct: 298 --------QPEVSAPGVDILSTYPD------DSYETLMGTAMATPHVSGVVALIQAAYYQ 343
Query: 538 -----------RDWSPAAIRSALVTTASQTGTDGMN 562
                       D S   +R  L  TA   G  G +
Sbjct: 344 KYGKILPVGTFDDISKNTVRGILHITADDLGPTGWD 379

>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin Soaked By 10mm Cacl2 Length = 395

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 33/156 (21%)
Query: 424 DSCNLIPCIKVNYEVGTQIL--SYIRRARSPIAKLSSPETV-IGDLVS-PRVASFSSRGP 479
           D   L   I   Y  G  I+  S    A SP    + PE + +G + S   +ASFS+R  
Sbjct: 237 DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNR-- 294
Query: 480 NSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH-- 537
                   +P++ APGVDILS YP         Y  L GT+M+ PHV+G+ ALI++ +  
Sbjct: 295 --------QPEVSAPGVDILSTYPD------DSYETLMGTAMATPHVSGVVALIQAAYYQ 340
Query: 538 -----------RDWSPAAIRSALVTTASQTGTDGMN 562
                       D S   +R  L  TA   G  G +
Sbjct: 341 KYGKILPVGTFDDISKNTVRGILHITADDLGPTGWD 376

>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between Mat-Tk-Subtilisin And Tk- Propeptide Length = 320

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 18/91 (19%)
Query: 449 ARSPIAKLSSPETV-IGDLVS-PRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIG 506
           A SP    + PE + +G + S   +ASFS+R          +P++ APGVDILS YP   
Sbjct: 189 APSPSYPAAYPEVIAVGAIDSNDNIASFSNR----------QPEVSAPGVDILSTYPD-- 236
Query: 507 SKDIQGYALLSGTSMSCPHVAGIAALIKSLH 537
                 Y  L GT+M+ PHV+G+ ALI++ +
Sbjct: 237 ----DSYETLMGTAMATPHVSGVVALIQAAY 263

>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of Pro-Sa-Subtilisin Length = 398

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 20/118 (16%)
Query: 424 DSCNLIPCIKVNYEVGTQIL--SYIRRARSPIAKLSSPETV-IGDLVS-PRVASFSSRGP 479
           D   L   I   Y  G  I+  S    A SP    + PE + +G + S   +ASFS+R  
Sbjct: 240 DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNR-- 297
Query: 480 NSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH 537
                   +P++ APGVDILS YP         Y  L GT+M+ PHV+G+ ALI++ +
Sbjct: 298 --------QPEVSAPGVDILSTYPD------DSYETLMGTAMATPHVSGVVALIQAAY 341

>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin Complex Length = 318

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 18/91 (19%)
Query: 449 ARSPIAKLSSPETV-IGDLVS-PRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIG 506
           A SP    + PE + +G + S   +ASFS+R          +P++ APGVDILS YP   
Sbjct: 187 APSPSYPAAYPEVIAVGAIDSNDNIASFSNR----------QPEVSAPGVDILSTYPD-- 234
Query: 507 SKDIQGYALLSGTSMSCPHVAGIAALIKSLH 537
                 Y  L GT+M+ PHV+G+ ALI++ +
Sbjct: 235 ----DSYETLMGTAMATPHVSGVVALIQAAY 261

>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin Length = 329

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 20/118 (16%)
Query: 424 DSCNLIPCIKVNYEVGTQIL--SYIRRARSPIAKLSSPETV-IGDLVS-PRVASFSSRGP 479
           D   L   I   Y  G  I+  S    A SP    + PE + +G + S   +ASFS+R  
Sbjct: 171 DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNR-- 228
Query: 480 NSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH 537
                   +P++ APGVDILS YP         Y  L GT+M+ PHV+G+ ALI++ +
Sbjct: 229 --------QPEVSAPGVDILSTYPD------DSYETLMGTAMATPHVSGVVALIQAAY 272

>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin And Tk-Propeptide Length = 329

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 20/118 (16%)
Query: 424 DSCNLIPCIKVNYEVGTQIL--SYIRRARSPIAKLSSPETV-IGDLVS-PRVASFSSRGP 479
           D   L   I   Y  G  I+  S    A SP    + PE + +G + S   +ASFS+R  
Sbjct: 171 DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNR-- 228
Query: 480 NSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH 537
                   +P++ APGVDILS YP         Y  L GT+M+ PHV+G+ ALI++ +
Sbjct: 229 --------QPEVSAPGVDILSTYPD------DSYETLMGTAMATPHVSGVVALIQAAY 272

>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin Length = 318

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 18/91 (19%)
Query: 449 ARSPIAKLSSPETV-IGDLVS-PRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIG 506
           A SP    + PE + +G + S   +ASFS+R          +P++ APGVDILS YP   
Sbjct: 187 APSPSYPAAYPEVIAVGAIDSNDNIASFSNR----------QPEVSAPGVDILSTYPD-- 234
Query: 507 SKDIQGYALLSGTSMSCPHVAGIAALIKSLH 537
                 Y  L GT M+ PHV+G+ ALI++ +
Sbjct: 235 ----DSYETLMGTXMATPHVSGVVALIQAAY 261

>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin Length = 318

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 18/91 (19%)
Query: 449 ARSPIAKLSSPETV-IGDLVS-PRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIG 506
           A SP    + PE + +G + S   +ASFS+R          +P++ APGVDILS YP   
Sbjct: 187 APSPSYPAAYPEVIAVGAIDSNDNIASFSNR----------QPEVSAPGVDILSTYPD-- 234
Query: 507 SKDIQGYALLSGTSMSCPHVAGIAALIKSLH 537
                 Y  L GT M+ PHV+G+ ALI++ +
Sbjct: 235 ----DSYETLMGTCMATPHVSGVVALIQAAY 261

>pdb|3G4S|I Chain I, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 70

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 42/68 (61%)
Query: 876 PPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTA 935
           PP + L+   AG E GS +P++  V  ++++Q++ IA +K PDL    + +A + + GT 
Sbjct: 3   PPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTC 62
Query: 936 ANMGIDID 943
            ++G+ I+
Sbjct: 63  TSLGVTIE 70

>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii Length = 327

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSL-----HRDWSPAA 544
           DIVAPGV I S Y         GYA LSGT+M+ PHVAG  ALI +L      R  S   
Sbjct: 226 DIVAPGVGIKSTYLD------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETE 279
Query: 545 IRSALVTTASQTG 557
           I + LV  A+  G
Sbjct: 280 IYAQLVRRATPIG 292

>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii Length = 327

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSL-----HRDWSPAA 544
           DIVAPGV I S Y         GYA LSGT+M+ PHVAG  ALI +L      R  S   
Sbjct: 226 DIVAPGVGIKSTYLD------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETE 279
Query: 545 IRSALVTTASQTG 557
           I + LV  A+  G
Sbjct: 280 IYAQLVRRATPIG 292

>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii Length = 329

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSL-----HRDWSPAA 544
           DIVAPGV I S Y         GYA LSGT+M+ PHVAG  ALI +L      R  S   
Sbjct: 226 DIVAPGVGIKSTYLD------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETE 279
Query: 545 IRSALVTTASQTG 557
           I + LV  A+  G
Sbjct: 280 IYAQLVRRATPIG 292

>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii Length = 311

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSL-----HRDWSPAA 544
           DIVAPGV I S Y         GYA LSGT+M+ PHVAG  ALI +L      R  S   
Sbjct: 208 DIVAPGVGIKSTYLD------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETE 261
Query: 545 IRSALVTTASQTG 557
           I + LV  A+  G
Sbjct: 262 IYAQLVRRATPIG 274

>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K) Length = 434

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 13/99 (13%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIG------SKDIQGYALLSGTSMSC 523
            VA FSSRGP       +KPD++APG  ILSA   +       +     YA + GTSM+ 
Sbjct: 201 HVAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMAT 258
Query: 524 PHVAGIAA-----LIKSLHRDWSPAAIRSALVTTASQTG 557
           P VAG  A      +K+      P+ +++AL+  A+  G
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG 297

>pdb|2GKO|A Chain A, S41 Psychrophilic Protease Length = 309

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 470 RVASFSSRGPNSMSP--AVLKPD--IVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPH 525
           RVA FSSRG    +    + K D  I APG  + S +         GYA +SGTSM+ PH
Sbjct: 201 RVADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFD------GGYATISGTSMASPH 254
Query: 526 VAGIAALIKSLHRDWSPAAIRSALVTTAS 554
            AG+AA I +     S   +R  L T AS
Sbjct: 255 AAGLAAKIWAQSPAASNVDVRGELQTRAS 283

>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From Tritirachium Album Limber At 0.98 A Resolution Length = 279

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 14/77 (18%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
           R +SFS+ G      +VL  DI  PG DILS +    ++ I      SGTSM+ PHVAG+
Sbjct: 188 RRSSFSNYG------SVL--DIFGPGTDILSTWIGGSTRSI------SGTSMATPHVAGL 233
Query: 530 AALIKSLHRDWSPAAIR 546
           AA + +L +  + +A R
Sbjct: 234 AAYLMTLGKTTAASACR 250

>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 18/92 (19%)
Query: 480 NSMSPAVLKP-------DIVAPGVDI-----------LSAYPPIGSKDIQGYALLSGTSM 521
           NS  P +  P       DI  P V +           L     + ++  Q Y   +GTSM
Sbjct: 311 NSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSM 370
Query: 522 SCPHVAGIAALIKSLHRDWSPAAIRSALVTTA 553
           + PHV+G+A L+ S H + S + +R+AL  TA
Sbjct: 371 ATPHVSGVATLVWSYHPECSASQVRAALNATA 402

>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom) Length = 434

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 471 VASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIG------SKDIQGYALLSGTSMSCP 524
           VA FSSRGP       +KPD++APG  ILSA   +       +     YA   GTS + P
Sbjct: 202 VAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYXGGTSXATP 259
Query: 525 HVAGIAA-----LIKSLHRDWSPAAIRSALVTTASQTG 557
            VAG  A      +K+      P+ +++AL+  A+  G
Sbjct: 260 IVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG 297

>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii) Length = 1354

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 22/126 (17%)
Query: 491 IVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAAL----IKSLHRDWSPAAIR 546
           + APG  I S      SK      L +GTS + PHVAG  AL    +K  + ++SP +I+
Sbjct: 437 VCAPGGAIASVPQFTXSKS----QLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIK 492
Query: 547 SALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFL 606
            A+  TA++ G                DPF  G G +N  KA      +  + ++ ++F 
Sbjct: 493 RAISVTATKLGY--------------VDPFAQGHGLLNVEKAFEHLTEHRQSKDNXLRFS 538
Query: 607 CFMGHN 612
             +G+N
Sbjct: 539 VRVGNN 544

>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine Proteinase Length = 284

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
           D+ APG  I SA+         GY  +SGTSM+ PHVAG+AAL    +   +P  +   L
Sbjct: 196 DLFAPGSQIKSAWYD------GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLL 249
Query: 550 VTTASQ 555
            + AS+
Sbjct: 250 NSRASE 255

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	954
3i6s_A	649	Subtilisin-like protease; PA-domain, FN3-domain, h	0.0
3vta_A	621	Cucumisin; subtilisin-like fold, serine protease,	0.0
1xf1_A	926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	1e-138
3bbo_K	224	Ribosomal protein L11; large ribosomal subunit, sp	5e-57
1vq8_I	162	50S ribosomal protein L11P; ribosome 50S, protein-	2e-55
3egv_B	146	50S ribosomal protein L11, ribosomal protein L11 m	1e-48
1mms_A	140	Protein (ribosomal protein L11); RNA-protein compl	2e-46
3r8s_I	141	50S ribosomal protein L11; protein biosynthesis, R	4e-46
2zkr_i	165	60S ribosomal protein L12; protein-RNA complex, 60	5e-39
2ftc_G	145	L11MT, MRP-L11, 39S ribosomal protein L11, mitocho	5e-39
3iz5_J	166	60S ribosomal protein L12 (L11P); eukaryotic ribos	3e-35
1hc8_A	76	Ribosomal protein L11; ribosome, ribosomal RNA, te	9e-29
3cjs_B	72	50S ribosomal protein L11, ribosomal protein L11 m	2e-28
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	9e-28
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	7e-15
1r0r_E	274	Subtilisin carlsberg; high resolution, serine prot	9e-28
1r0r_E	274	Subtilisin carlsberg; high resolution, serine prot	1e-08
1to2_E	281	Subtilisin BPN'; serine protease, hydrolase; HET:	1e-27
1to2_E	281	Subtilisin BPN'; serine protease, hydrolase; HET:	2e-08
2ixt_A	310	36KDA protease; serine protease, sphericase, subti	2e-27
2ixt_A	310	36KDA protease; serine protease, sphericase, subti	3e-07
1gci_A	269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	3e-27
1gci_A	269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	3e-08
3lxu_X	1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	4e-27
3lxu_X	1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	1e-11
1qa6_A	67	Ribosomal protein L11; ribosomal RNA, tertiary str	4e-26
4aks_A	360	PATG, thiazoline oxidase/subtilisin-like protease;	5e-25
4aks_A	360	PATG, thiazoline oxidase/subtilisin-like protease;	2e-07
1r6v_A	671	Subtilisin-like serine protease; sandwich domain,	8e-25
1r6v_A	671	Subtilisin-like serine protease; sandwich domain,	2e-06
2iy9_A	347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	3e-24
2iy9_A	347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	3e-05
1y9z_A	441	Alkaline serine protease; subtilisin-like alpha/be	5e-24
1dbi_A	280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	5e-24
1dbi_A	280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	3e-08
2x8j_A	327	Intracellular subtilisin protease; hydrolase, seri	8e-24
2x8j_A	327	Intracellular subtilisin protease; hydrolase, seri	1e-06
1thm_A	279	Thermitase; hydrolase(serine protease); 1.37A {The	1e-23
1thm_A	279	Thermitase; hydrolase(serine protease); 1.37A {The	9e-09
2z30_A	320	TK-subtilisin; thermococcus kodakaraensis, hydrola	3e-22
2z30_A	320	TK-subtilisin; thermococcus kodakaraensis, hydrola	7e-05
1wmd_A	434	Protease; alpha-beta hydrolase fold, jelly-roll be	2e-21
1wmd_A	434	Protease; alpha-beta hydrolase fold, jelly-roll be	4e-13
3t41_A	471	Epidermin leader peptide processing serine protea;	3e-21
3t41_A	471	Epidermin leader peptide processing serine protea;	2e-09
2z2z_A	395	TK-subtilisin precursor; thermococcus kodakaraensi	3e-21
2z2z_A	395	TK-subtilisin precursor; thermococcus kodakaraensi	1e-10
3lpc_A	340	APRB2; protease, subtilase, virulence factor, hydr	1e-20
3lpc_A	340	APRB2; protease, subtilase, virulence factor, hydr	4e-09
2b6n_A	278	Proteinase K; S binding, substrate specificity, pr	3e-20
4dzt_A	276	Aqualysin-1, aqualysin-I; serine protease, calcium	5e-20
4dzt_A	276	Aqualysin-1, aqualysin-I; serine protease, calcium	8e-04
1sh7_A	284	Extracellular subtilisin-like serine proteinase; c	5e-20
2qtw_B	546	Proprotein convertase subtilisin/kexin type 9; cor	1e-18
2qtw_B	546	Proprotein convertase subtilisin/kexin type 9; cor	8e-05
2p4e_P	692	Proprotein convertase subtilisin/kexin type 9; pro	6e-18
2p4e_P	692	Proprotein convertase subtilisin/kexin type 9; pro	9e-14
3f7m_A	279	Alkaline serine protease VER112; verticillium psal	2e-17
2pwa_A	279	Proteinase K; structure, alanine boronic acid, hyd	4e-17
1wib_A	92	60S ribosomal protein L12; N-terminal domain, stru	8e-12
1p8j_A	471	Furin precursor; prohormone convertase, SPC1, PACE	3e-09
2id4_A	503	Kexin; KEX2, kexin, furin, proprotein, prohormone,	3e-08
2id4_A	503	Kexin; KEX2, kexin, furin, proprotein, prohormone,	9e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2oxa_A	600	Extracellular serine protease; kexin, hydrolase; 1	4e-06
2w2n_P	114	Proprotein convertase subtilisin/kexin type 9; hyd	2e-04

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649

 Score =  592 bits (1527), Expect = 0.0
 Identities = 219/655 (33%), Positives = 337/655 (51%), Gaps = 65/655 (9%)

Query: 114 TTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWK 173
           TT + +F+ L     S  L   S +G+  I+ ++D+G+WPES SF D GM    +P  WK
Sbjct: 1   TTHTSDFLKL---NPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMP--EIPKRWK 55

Query: 174 GICQKGEKFNSSNCNRKLIGARWFIKGIMDMIN-------------------AST----- 209
           GIC+ G +FN+S CNRKLIGA +F KGI+                       AS      
Sbjct: 56  GICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNF 115

Query: 210 ---NTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSI-G 265
               +  G A G ARG AP A LA+YK  ++ G   +D++ A D+A+ DGVD++S+S   
Sbjct: 116 AKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGY 175

Query: 266 NEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDR 325
             IPL+      D+I+I SF A+ KG+ V +SAGN GP   ++ N +PWI+ V +   DR
Sbjct: 176 RFIPLYE-----DAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDR 230

Query: 326 AFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGK 385
            F   +TLGN   + G S+   +     + + Y++ +     S     +           
Sbjct: 231 TFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNKTL-----SDCSSEELLSQVENPENT 285

Query: 386 IILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNL-IPCIKVNYEVGTQILS 444
           I++C    D  D       +T+A     I+         S     P + VN + G Q+++
Sbjct: 286 IVICD---DNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVIN 342

Query: 445 YIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPP 504
           Y++ + +P A ++  ET +    +P VA+ S+RGP+     + KPDI+APGV IL+AYPP
Sbjct: 343 YVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPP 402

Query: 505 IGS--------KDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQT 556
                           Y L SGTSM+ PH AGIAA++K+ H +WSP+AIRSA++TTA   
Sbjct: 403 NVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPL 462

Query: 557 GTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASI 616
                 I ++    K A P D+G GHV+PN+A++PGLVYD T +DY+  LC +   +   
Sbjct: 463 DNTRKPI-KDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQF 521

Query: 617 SRLTKSKINCLKNNHLALDLNLPS-ITIPNLHNNETV---TVTRKVTNVGQINSAYEALV 672
             + +S  +    ++ + DLN PS I + ++  N T+      R VTNVG+  + Y+A +
Sbjct: 522 KTIARSSASH-NCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKL 580

Query: 673 EAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTDDS 727
           +AP    ++V P+++ F    +  S+ +T                 GS+TW + +
Sbjct: 581 KAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGD----EGQSRNVGSITWVEQN 631

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621

 Score =  589 bits (1519), Expect = 0.0
 Identities = 230/644 (35%), Positives = 321/644 (49%), Gaps = 70/644 (10%)

Query: 114 TTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWK 173
           TTRSW+F+G         +   S +    ++G++DTG+WPES SF D+G    P PP WK
Sbjct: 1   TTRSWDFLGF-----PLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFS--PPPPKWK 53

Query: 174 GICQKGEKFNSSNCNRKLIGARWFIKGIMDMIN---------------AST--------N 210
           G C+    F    CNRK+IGAR +  G                     AST         
Sbjct: 54  GTCETSNNFR---CNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQA 110

Query: 211 TDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPL 270
              GL  G ARGG PLA +A YK CW+ GC+D D+L A+D AI DGVD++S+S+G   P 
Sbjct: 111 NLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPR 170

Query: 271 FSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTA 330
             +    D+IAIGSFHA+ +GI   +SAGN GP   T  + +PW+++V A+T+DR F T 
Sbjct: 171 HYF---VDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQ 227

Query: 331 ITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIA---FDPDSANDCRQGSLNATLAAGKII 387
           + +GN Q   G SI+     + +  L     I    FD  ++  C   S+N  L  GKI+
Sbjct: 228 VQIGNGQSFQGVSINTFD--NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIV 285

Query: 388 LCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIR 447
           +C +     +            G   +    +T        +P   ++       L YI 
Sbjct: 286 VCEASFGPHEF------FKSLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLATLRYIY 339

Query: 448 RARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGS 507
             RSP A +    T I +  +P V SFSSRGPN  +  V+KPDI  PGV+IL+A+P +  
Sbjct: 340 SIRSPGATI-FKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAP 398

Query: 508 ----KDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNI 563
               +    + ++SGTSMSCPH+ GIA  +K+ +  WSPAAI+SAL+TTAS         
Sbjct: 399 VGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPM------- 451

Query: 564 FEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSK 623
               +       F  G GHVNP KA+ PGLVYD    DY++FLC  G+N  ++ R+T   
Sbjct: 452 ---NARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDY 508

Query: 624 INCLKNN-HLALDLNLPSITIPNLHN-NETVTVTRKVTNVGQINSAYEALVEAPYGVNMT 681
             C   N     DLN PS  +    +        R +T+V    S Y A++ AP G+ ++
Sbjct: 509 SACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTIS 568

Query: 682 VEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTD 725
           V P V+SFN      SF +T   +              SL W+D
Sbjct: 569 VNPNVLSFNGLGDRKSFTLTVRGS------IKGFVVSASLVWSD 606

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926

 Score =  436 bits (1121), Expect = e-138
 Identities = 111/609 (18%), Positives = 197/609 (32%), Gaps = 55/609 (9%)

Query: 124 HYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFN 183
           +     K L  ++  G GT++ +ID G     E++              K   +K +K +
Sbjct: 1   NDPSQVKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKT--KARYQSKEDLEKAKKEH 58

Query: 184 SSN----CNRKLIGARWFIKGIMDMIN-------AST----NTDEGLAAGLARGGAPLAH 228
                   N K+     + K     ++       +         E        G  P A 
Sbjct: 59  GITYGEWVNDKVAYYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEPYRLEGAMPEAQ 118

Query: 229 LAIYKACWDIGCT--DADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFH 286
           L + +     G      +  +A   AI+ G  V+++S GN     +Y +  D       +
Sbjct: 119 LLLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGN--AALAYANLPDETKKAFDY 176

Query: 287 AIAKGITVVSSAGNDGPVAQTI---VNTAPWIITVGA-TTIDRAFPTAITLGNHQVLWGQ 342
           A +KG+++V+SAGND          +   P    VG     D     A    + Q+    
Sbjct: 177 AKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETV 236

Query: 343 SIDIGKVSHGFTGLTYSERIA---FDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQ 399
            +           +  + R         +  +      +     GKI L        D +
Sbjct: 237 RVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALI--ERGDIDFK 294

Query: 400 SAAISVTQAGGVGLIYAQFHTDGLD----SCNLIPCIKVNYEVGTQILSYIRRARSPIAK 455
                  +AG VG++       G      + + +P   ++ + G  +             
Sbjct: 295 DKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNP----QKTIT 350

Query: 456 LSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYAL 515
            ++   V+      +++ FSS G  +     +KPDI APG DILS+           YA 
Sbjct: 351 FNATPKVLPTASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVAN------NKYAK 402

Query: 516 LSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADP 575
           LSGTSMS P VAGI  L++  +    P    S  +  A +          +   +    P
Sbjct: 403 LSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSP 462

Query: 576 FDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALD 635
              G G V+  KA    +   +T +D       + +                K      +
Sbjct: 463 RQQGAGAVDAKKASAATMY--VTDKDNTSSKVHLNNVSDKFEVTVNVHNKSDK----PQE 516

Query: 636 LNLPSITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKI 695
           L   +    +  + +   +  KV       S  +  + A     +TV  +   F+  +  
Sbjct: 517 LYYQATVQTDKVDGKHFALAPKVLYE---TSWQKITIPANSSKQVTVPIDASRFSKDLLA 573

Query: 696 LSFRVTFFS 704
                 F  
Sbjct: 574 QMKNGYFLE 582

>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 224

 Score =  195 bits (495), Expect = 5e-57
 Identities = 153/203 (75%), Positives = 176/203 (86%), Gaps = 5/203 (2%)

Query: 751 SCSLFPSAVNLSSNSNVSLPFYDNKVKPSPLLSSTPRFLTVIAMAPPKPGGKAKAKKVLG 810
           S  L PS+++LSSN   SL F ++K+  SP  S++ R L+++AMAP       KAKKV+G
Sbjct: 24  SSLLTPSSLSLSSNPRNSLQFLNSKLFLSPP-STSHRRLSIVAMAPKP----GKAKKVIG 78

Query: 811 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFT 870
           +IKLALEAGKATPAPPVGPALG+KGVNIMAFCKDYNARTADK G+VIPVEITV+DD+SFT
Sbjct: 79  VIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGFVIPVEITVFDDKSFT 138

Query: 871 FILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRI 930
           FILKTPPASVLLLKA+G EKGSKDP+ +KVGKITI+QLR IATEKLPDLNCT+IESAMRI
Sbjct: 139 FILKTPPASVLLLKASGAEKGSKDPQMEKVGKITIDQLRGIATEKLPDLNCTTIESAMRI 198

Query: 931 IAGTAANMGIDIDPPVLETKKKE 953
           IAGTAANMGIDIDPP+L  KKKE
Sbjct: 199 IAGTAANMGIDIDPPILVKKKKE 221

>1vq8_I 50S ribosomal protein L11P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.4.7.1 PDB: 1vq4_I* 1vq5_I* 1vq6_I* 1vq7_I* 1s72_I* 1vq9_I* 1vqk_I* 1vql_I* 1vqm_I* 1vqn_I* 1vqo_I* 1vqp_I* 1yhq_I* 1yi2_I* 1yij_I* 1yit_I* 1yj9_I* 1yjn_I* 1yjw_I* 2otl_I* ... Length = 162

 Score =  188 bits (478), Expect = 2e-55
 Identities = 45/136 (33%), Positives = 79/136 (58%)

Query: 808 VLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDR 867
           + G I++ +  G+A P PP+GP LG   V++ A  ++ N +TA   G  +PV +   DD 
Sbjct: 1   MAGTIEVLVPGGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAFDGTEVPVTVKYDDDG 60

Query: 868 SFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESA 927
           SF   +  PP + L+   AG E GS +P++  V  ++++Q++ IA +K PDL    + +A
Sbjct: 61  SFEIEVGVPPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNA 120

Query: 928 MRIIAGTAANMGIDID 943
            + + GT  ++G+ I+
Sbjct: 121 AKEVVGTCTSLGVTIE 136

>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; post-translational modification, multiple methyltransferase; HET: SAH 4MM; 1.75A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 2e34_A 2e35_A 2e36_A 2h8w_A 2hgj_L 2hgq_L 2hgu_L 2j01_K 2j03_K 2jl6_K 2jl8_K 2klm_A 2nxn_B 2wh2_K 2wh4_K 2wrj_K 2wrl_K 2x9s_K 2x9u_K 2xtg_K ... Length = 146

 Score =  168 bits (427), Expect = 1e-48
 Identities = 81/138 (58%), Positives = 107/138 (77%)

Query: 806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYD 865
           KKV+ ++KL L AG ATPAPPVGPALG  G NIM F K +NA TA+    ++PVEIT+Y 
Sbjct: 1   KKVVAVVKLQLPAGAATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYA 60

Query: 866 DRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIE 925
           DRSFTF+ KTPPAS L+ KAAG+EKG+  P ++KVG+IT EQ+  IA +K+PDLN T +E
Sbjct: 61  DRSFTFVTKTPPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLE 120

Query: 926 SAMRIIAGTAANMGIDID 943
           +A R+IAG+A +MG+++ 
Sbjct: 121 AAARMIAGSARSMGVEVV 138

>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA, ribosome, translocation, thiostrep; 2.57A {Thermotoga maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A* 1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K 2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A 487d_L 1pn8_L 1pn7_L Length = 140

 Score =  161 bits (409), Expect = 2e-46
 Identities = 93/139 (66%), Positives = 113/139 (81%)

Query: 805 AKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVY 864
           AKKV   IKL L AGKATPAPPVGPALG  GVNIM FCK +NA TADKAG ++PV ITVY
Sbjct: 1   AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVY 60

Query: 865 DDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSI 924
           +D+SFTFI+KTPPAS LL KAAG+EKGS +PK++ VGK+T +Q+  IA  K+PDLN  S+
Sbjct: 61  EDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSL 120

Query: 925 ESAMRIIAGTAANMGIDID 943
           E+AM+II GTA +MGI++ 
Sbjct: 121 EAAMKIIEGTAKSMGIEVV 139

>3r8s_I 50S ribosomal protein L11; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I* 2qao_I* 2qba_I* 2qbc_I* 2qbe_I 2qbg_I 2qbi_I* 2qbk_I* 2qov_I 2qox_I 2qoz_I* 2qp1_I* 2rdo_I 2vhm_I ... Length = 141

 Score =  161 bits (407), Expect = 4e-46
 Identities = 78/140 (55%), Positives = 98/140 (70%), Gaps = 1/140 (0%)

Query: 805 AKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITV 863
           AKKV   +KL + AG A P+PPVGPALG +GVNIM FCK +NA+T   + G  IPV ITV
Sbjct: 1   AKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITV 60

Query: 864 YDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTS 923
           Y DRSFTF+ KTPPA+VLL KAAG++ GS  P + KVGKI+  QL+ IA  K  D+    
Sbjct: 61  YADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGAD 120

Query: 924 IESAMRIIAGTAANMGIDID 943
           IE+  R I GTA +MG+ ++
Sbjct: 121 IEAMTRSIEGTARSMGLVVE 140

>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3izc_J 3izs_J 3j16_H* 3o5h_L 3jyw_K 1s1i_K Length = 165

 Score =  141 bits (357), Expect = 5e-39
 Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 5/148 (3%)

Query: 796 PPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGY 855
           PPK            ++ L    G+      + P +G  G++      D    T D  G 
Sbjct: 2   PPKFDPNEI-----KVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGL 56

Query: 856 VIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEK 915
            I V++T+ + ++   ++ +  A ++           K    +  G IT +++  IA + 
Sbjct: 57  RITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQM 116

Query: 916 LPDLNCTSIESAMRIIAGTAANMGIDID 943
                   +   ++ I GTA ++G ++D
Sbjct: 117 RHRSLARELSGTIKEILGTAQSVGCNVD 144

>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_G Length = 145

 Score =  140 bits (354), Expect = 5e-39
 Identities = 54/143 (37%), Positives = 82/143 (57%), Gaps = 5/143 (3%)

Query: 806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVY 864
            +V G+I+  + AG A P PP+GP LG +GV+I  FCK++N RT D K G  +P +I V 
Sbjct: 2   PEVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVK 61

Query: 865 DDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPD----LN 920
            DR+F   +  P  S  L  AAG+EKG++   ++  G +T++ +  IA  K  D    L 
Sbjct: 62  PDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQ 121

Query: 921 CTSIESAMRIIAGTAANMGIDID 943
              + S +R I G+A ++GI + 
Sbjct: 122 DVPLSSVVRSIIGSARSLGIRVV 144

>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A Length = 76

 Score =  108 bits (272), Expect = 9e-29
 Identities = 44/75 (58%), Positives = 57/75 (76%)

Query: 869 FTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAM 928
           FTFI KTPPA+VLL KAAG+E GS +P + KV  I  +++R IA  K+PDLN  SIE+AM
Sbjct: 1   FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAM 60

Query: 929 RIIAGTAANMGIDID 943
           R+I GTA +MGI ++
Sbjct: 61  RMIEGTARSMGIVVE 75

>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A Length = 72

 Score =  108 bits (270), Expect = 2e-28
 Identities = 46/71 (64%), Positives = 55/71 (77%)

Query: 806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYD 865
           KKV+ ++KL L AGKATPAPPVGPALG  G NIM F K +NA TA+    ++PVEIT+Y 
Sbjct: 2   KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYA 61

Query: 866 DRSFTFILKTP 876
           DRSFTF+ KTP
Sbjct: 62  DRSFTFVTKTP 72

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539

 Score =  118 bits (296), Expect = 9e-28
 Identities = 45/136 (33%), Positives = 61/136 (44%), Gaps = 17/136 (12%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPP---IGSKDIQGYALLSGTSMSCPHV 526
            +  FSSRGP +     LKP++VAPG  I++A      +G      Y    GT+M+ PHV
Sbjct: 308 VITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHV 365

Query: 527 AGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPN 586
           AGIAAL+   H  W+P  +++AL+ TA     D                   G G VN  
Sbjct: 366 AGIAALLLQAHPSWTPDKVKTALIETADIVKPDE------------IADIAYGAGRVNAY 413

Query: 587 KAMNPGLVYDITVEDY 602
           KA        +T   Y
Sbjct: 414 KAAYYDNYAKLTFTGY 429

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539

 Score = 77.6 bits (191), Expect = 7e-15
 Identities = 61/311 (19%), Positives = 101/311 (32%), Gaps = 70/311 (22%)

Query: 45  EDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIA-------- 96
           E    I   +       +   +     I Y+Y       A ++       IA        
Sbjct: 35  EVSTIIMFDNQADKEKAVEILDFLGAKIKYNYHI-IPALAVKIKVKDLLIIAGLMDTGYF 93

Query: 97  ---ELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWP 153
              +L GV  +  + ++K+               ++ N+      G G  IGIIDTG+  
Sbjct: 94  GNAQLSGVQFIQEDYVVKVAVETEGLDESAAQVMAT-NMWNLGYDGSGITIGIIDTGIDA 152

Query: 154 ESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMD---------- 203
                  K                             +IG   F+ G             
Sbjct: 153 SHPDLQGK-----------------------------VIGWVDFVNGKTTPYDDNGHGTH 183

Query: 204 ---MINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAI----HD 255
              +   +     G   G+A    P A L   K     G  + +D++   D A+      
Sbjct: 184 VASIAAGTGAASNGKYKGMA----PGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKY 239

Query: 256 GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVN--TAP 313
           G+ V+++S+G+        D  DS++    +A   G+ VV +AGN GP   T+ +   A 
Sbjct: 240 GIKVINLSLGSS----QSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAAS 295

Query: 314 WIITVGATTID 324
            +ITVGA    
Sbjct: 296 KVITVGAVDKY 306

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274

 Score =  113 bits (284), Expect = 9e-28
 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 30/119 (25%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
             ASFSS G         + +++APG  + S YP   +     YA L+GTSM+ PHVAG 
Sbjct: 184 NRASFSSVGA--------ELEVMAPGAGVYSTYP--TN----TYATLNGTSMASPHVAGA 229

Query: 530 AALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKA 588
           AALI S H + S + +R+ L +TA+  G+                    G G +N   A
Sbjct: 230 AALILSKHPNLSASQVRNRLSSTATYLGSSF----------------YYGKGLINVEAA 272

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 17/125 (13%)

Query: 207 ASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGC-TDADVLKAFDKAIHDGVDVLSVSIG 265
           A+ +   G+      G AP   L   K     G  + + ++   + A  +G+DV+++S+G
Sbjct: 72  AALDNTTGVL-----GVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLG 126

Query: 266 NEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNT----APWIITVGAT 321
                 + + Q    A+   +A A+G+ VV++AGN G    T           +I VGA 
Sbjct: 127 GASGS-TAMKQ----AVD--NAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAV 179

Query: 322 TIDRA 326
             +  
Sbjct: 180 DSNSN 184

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281

 Score =  112 bits (283), Expect = 1e-27
 Identities = 42/119 (35%), Positives = 56/119 (47%), Gaps = 30/119 (25%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
           + ASFSS GP        + D++APGV I S  P  G+     Y   +GTSM+ PHVAG 
Sbjct: 185 QRASFSSVGP--------ELDVMAPGVSIQSTLP--GN----KYGAYNGTSMASPHVAGA 230

Query: 530 AALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKA 588
           AALI S H +W+   +RS+L  T ++ G                     G G +N   A
Sbjct: 231 AALILSKHPNWTNTQVRSSLENTTTKLGDSF----------------YYGKGLINVQAA 273

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281

 Score = 55.6 bits (135), Expect = 2e-08
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)

Query: 207 ASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGC-TDADVLKAFDKAIHDGVDVLSVSIG 265
           A+ N   G+      G AP A L   K     G    + ++   + AI + +DV+++S+G
Sbjct: 73  AALNNSIGVL-----GVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLG 127

Query: 266 NEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNT----APWIITVGAT 321
                 +        A+    A+A G+ VV++AGN+G    +         P +I VGA 
Sbjct: 128 GPSGSAALKA-----AVD--KAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAV 180

Query: 322 TIDRA 326
                
Sbjct: 181 DSSNQ 185

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310

 Score =  112 bits (283), Expect = 2e-27
 Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 10/97 (10%)

Query: 468 SPRVASFSSRGP----NSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSC 523
           + RVA +SSRG               +I APG  + S +         GY  +SGTSM+ 
Sbjct: 200 TYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYN------GGYNTISGTSMAT 253

Query: 524 PHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDG 560
           PHV+G+AA I + +   S   +RS L   A      G
Sbjct: 254 PHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKG 290

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 44/215 (20%), Positives = 65/215 (30%), Gaps = 61/215 (28%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
           G G  I ++DTGV        +                              +   + F 
Sbjct: 25  GSGINIAVLDTGVNTSHPDLVNN-----------------------------VEQCKDFT 55

Query: 199 KGIMDMINASTNTDE--------GLAAGLA-------RGGAPLAHLAIYKACWDIG-CTD 242
                    ++ TD         G A            G AP A L  YK   D G    
Sbjct: 56  GA--TTPINNSCTDRNGHGTHVAGTALADGGSDQAGIYGVAPDADLWAYKVLLDSGSGYS 113

Query: 243 ADVLKAFD-----KAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSS 297
            D+  A               ++S+S+G+     S  +   S A+    A +KG+ +V++
Sbjct: 114 DDIAAAIRHAADQATATGTKTIISMSLGS-----SANNSLISSAVNY--AYSKGVLIVAA 166

Query: 298 AGNDGPVAQTIVN--TAPWIITVGATTIDRAFPTA 330
           AGN G    TI      P  I V A    +   T 
Sbjct: 167 AGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTY 201

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269

 Score =  111 bits (279), Expect = 3e-27
 Identities = 46/119 (38%), Positives = 55/119 (46%), Gaps = 30/119 (25%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
             ASFS  G           DIVAPGV++ S YP  GS     YA L+GTSM+ PHVAG 
Sbjct: 179 NRASFSQYGA--------GLDIVAPGVNVQSTYP--GS----TYASLNGTSMATPHVAGA 224

Query: 530 AALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKA 588
           AAL+K  +  WS   IR+ L  TA+  G+                    G G VN   A
Sbjct: 225 AALVKQKNPSWSNVQIRNHLKNTATSLGSTN----------------LYGSGLVNAEAA 267

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269

 Score = 55.2 bits (134), Expect = 3e-08
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 13/121 (10%)

Query: 207 ASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIG 265
           A+ N   G+      G AP A L   K     G  + + + +  + A ++G+ V ++S+G
Sbjct: 71  AALNNSIGVL-----GVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLG 125

Query: 266 NEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDR 325
           +  P  S   ++   A+    A ++G+ VV+++GN G  + +        + VGAT  + 
Sbjct: 126 S--PSPSATLEQ---AVN--SATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNN 178

Query: 326 A 326
            
Sbjct: 179 N 179

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354

 Score =  118 bits (296), Expect = 4e-27
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 24/140 (17%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
            V +++SR P           + APG  I S      S       L++GTSM+ PHVAG 
Sbjct: 418 NVYTWTSRDPCIDG--GQGVTVCAPGGAIASVPQFTMS----KSQLMNGTSMAAPHVAGA 471

Query: 530 AALIKSL----HRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNP 585
            AL+ S     + ++SP +I+ A+  TA++ G                DPF  G G +N 
Sbjct: 472 VALLISGLKQQNIEYSPYSIKRAISVTATKLG--------------YVDPFAQGHGLLNV 517

Query: 586 NKAMNPGLVYDITVEDYIQF 605
            KA      +  + ++ ++F
Sbjct: 518 EKAFEHLTEHRQSKDNMLRF 537

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354

 Score = 68.3 bits (166), Expect = 1e-11
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 20/128 (15%)

Query: 207 ASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGC---TDADVLKAFDKAI-----HDGVD 258
           +  ++   +      G AP A +              T   +++A  K +        +D
Sbjct: 281 SGNHSSRDVD-----GVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRID 335

Query: 259 VLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVN----TAPW 314
           V+++S G           R    +        G+  V+SAGN GP   T+      + P 
Sbjct: 336 VINMSYG--EHANWSNSGRIGELMNEV-VNKYGVVWVASAGNHGPALCTVGTPPDISQPS 392

Query: 315 IITVGATT 322
           +I VGA  
Sbjct: 393 LIGVGAYV 400

>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C Length = 67

 Score =  100 bits (252), Expect = 4e-26
 Identities = 40/67 (59%), Positives = 51/67 (76%)

Query: 874 KTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAG 933
           KTPPA+VLL KAAG+E GS +P + KV  I  +++R IA  K+PDLN  SIE+AMR+I G
Sbjct: 1   KTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEG 60

Query: 934 TAANMGI 940
           TA +MGI
Sbjct: 61  TARSMGI 67

>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360

 Score =  106 bits (267), Expect = 5e-25
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 25/125 (20%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
               FS+ G N+      K  I+APG +IL A P   ++       L+GTSM+ P + GI
Sbjct: 252 TPCHFSNWGGNN-----TKEGILAPGEEILGAQP--CTE---EPVRLTGTSMAAPVMTGI 301

Query: 530 AALIKSLH----RDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNP 585
           +AL+ SL     +     A+R+AL+ TA     + +            +P     G VN 
Sbjct: 302 SALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEVVE-----------EPERCLRGFVNI 350

Query: 586 NKAMN 590
             AM 
Sbjct: 351 PGAMK 355

>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 30/209 (14%), Positives = 61/209 (29%), Gaps = 29/209 (13%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIG----A 194
                I IID         F  +G   + V P+W     +          + +       
Sbjct: 48  DPQITIVIIDGDPDYTLSCF--EGAEVSKVFPYWHEP-AEPITPEDYAAFQSIRDQGLKG 104

Query: 195 RWFIKGIMDMINASTNTDE---------GLAAGLARGG----APLAHLAIYKACWDIG-- 239
           +   + +  +I  + +                G         AP   +        I   
Sbjct: 105 KEKEEALEAVIPDTKDRIVLNDHACHVTSTIVGQEHSPVFGIAPNCRVINMPQDAVIRGN 164

Query: 240 ----CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVV 295
                +  ++ +A D A+  G +++  +        S  ++    AI         + +V
Sbjct: 165 YDDVMSPLNLARAIDLALELGANIIHCAFCRPTQ-TSEGEEILVQAIKK--CQDNNVLIV 221

Query: 296 SSAGNDGPVAQTIVNTAPWIITVGATTID 324
           S  GN+   +  +    P  + VGA  +D
Sbjct: 222 SPTGNNSNESWCLPAVLPGTLAVGAAKVD 250

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671

 Score =  109 bits (274), Expect = 8e-25
 Identities = 40/146 (27%), Positives = 53/146 (36%), Gaps = 33/146 (22%)

Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQ------------GYAL 515
           + RVA FSSR             + APGV ILS  P   S   +             Y  
Sbjct: 325 TFRVAGFSSRSD--------GVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDY 376

Query: 516 LSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADP 575
             GTSM+ PHV G+ A++     +  P  IR  L  TA     +G +             
Sbjct: 377 YQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWDHD----------- 425

Query: 576 FDIGGGHVNPNKAMNPGLVYDITVED 601
              G G V  + A+   L     VE+
Sbjct: 426 --TGYGLVKLDAALQGPLPTQGGVEE 449

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671

 Score = 50.5 bits (120), Expect = 2e-06
 Identities = 28/126 (22%), Positives = 43/126 (34%), Gaps = 20/126 (15%)

Query: 207 ASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGC-------TDADVLKAFDKAIHDGVDV 259
           A+    +G+      G AP A +       D           D  V      A   G  V
Sbjct: 209 AAKKDGKGIV-----GVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKV 263

Query: 260 LSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTA-PWIITV 318
           ++ S G     +SY  +    A    +A+  G+ +V SAGN+   +        P +I V
Sbjct: 264 MNHSWGG--WGYSYTMKE---AFD--YAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQV 316

Query: 319 GATTID 324
            A    
Sbjct: 317 AALDYY 322

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347

 Score =  104 bits (261), Expect = 3e-24
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 27/138 (19%)

Query: 453 IAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQG 512
           +A L+        ++     + S  G N         DI APG +I    P   +     
Sbjct: 218 VAALAQYRKGETPVLHGGGITGSRFGNNW-------VDIAAPGQNITFLRP--DA----K 264

Query: 513 YALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKE 572
               SGTS +   V+G+ A + S +   +   ++  L+ +A +  +    +         
Sbjct: 265 TGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLVDKVT-------- 316

Query: 573 ADPFDIGGGHVNPNKAMN 590
                  G  +N  KA++
Sbjct: 317 ------EGRVLNAEKAIS 328

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 17/135 (12%), Positives = 37/135 (27%), Gaps = 25/135 (18%)

Query: 222 GGAPLAHLAIYKACWDIG----CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQR 277
           G  P A ++  +   D          + + +          ++++S G +    + +   
Sbjct: 105 GVYPHALISSRRVIPDGVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTE 164

Query: 278 DSIAIGSFHAIAKGITVVSSAGNDG-----------------PVAQTIVNTAPWIITVGA 320
                           +V++ GNDG                     ++      +I V A
Sbjct: 165 LLSR----MGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAA 220

Query: 321 TTIDRAFPTAITLGN 335
               R   T +  G 
Sbjct: 221 LAQYRKGETPVLHGG 235

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441

 Score =  105 bits (263), Expect = 5e-24
 Identities = 74/480 (15%), Positives = 142/480 (29%), Gaps = 102/480 (21%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIG----- 193
                I IID+G        +   +               G  +   N N          
Sbjct: 21  AGNRTICIIDSGYDRSHNDLNANNVT-------GTNNSGTGNWYQPGNNN----AHGTHV 69

Query: 194 ARWFIKGIMDMINASTNTDEGLAAGLARGGAPL--AHLAIYKACWDIGC-TDADVLKAFD 250
           A     G    I A  N +EG+      G  P   A++ I K   + G    + ++ A D
Sbjct: 70  A-----GT---IAAIAN-NEGVV-----GVMPNQNANIHIVKVFNEAGWGYSSSLVAAID 115

Query: 251 KAI-HDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIV 309
             +   G +V+++S+G      +  ++    A+ +      G+ ++++AGN G  + +  
Sbjct: 116 TCVNSGGANVVTMSLGG--SGSTTTERN---ALNT--HYNNGVLLIAAAGNAGDSSYSYP 168

Query: 310 NTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIG-----------KVSHGFTGLTY 358
            +   +++V A   +               +   ++I                    +T 
Sbjct: 169 ASYDSVMSVAAVDSNLDHAA---FSQ----YTDQVEISGPGEAILSTVTVGEGRLADITI 221

Query: 359 SERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQF 418
             +  F        R      + A   I    +    +   +            +   + 
Sbjct: 222 GGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVER 281

Query: 419 HTDGLDSCNLIPCIK-VNYEVGTQILSY-------IRRARSPIAKLSSPETVIGDLVSPR 470
             +   S   I   K         I+ Y       ++      A        +    +  
Sbjct: 282 VGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATG 341

Query: 471 VASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIA 530
           +A  +  G ++         +   G                 Y   +GTSM+ PHV+G+A
Sbjct: 342 LALKAKLGQST--------TVSNQGNQ--------------DYEYYNGTSMATPHVSGVA 379

Query: 531 ALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN 590
            L+ S H + S + +R+AL  TA      G +                G G +N   A  
Sbjct: 380 TLVWSYHPECSASQVRAALNATADDLSVAGRDNQ-------------TGYGMINAVAAKA 426

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280

 Score =  101 bits (255), Expect = 5e-24
 Identities = 40/121 (33%), Positives = 54/121 (44%), Gaps = 31/121 (25%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
           R+ASFS+ G           D+VAPGVDI+S            YA +SGTSM+ PHVAG+
Sbjct: 190 RLASFSNYGT--------WVDVVAPGVDIVSTITG------NRYAYMSGTSMASPHVAGL 235

Query: 530 AALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAM 589
           AAL+ S  +  +   IR A+  TA +    G                    G +N   A+
Sbjct: 236 AALLAS--QGRNNIEIRQAIEQTADKISGTG---------------TYFKYGRINSYNAV 278

Query: 590 N 590
            
Sbjct: 279 T 279

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280

 Score = 55.3 bits (134), Expect = 3e-08
 Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 13/123 (10%)

Query: 205 INASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVS 263
             A TN   G+A     G AP   +   +A    G  T +D+  A   A   G +V+++S
Sbjct: 80  AAAETNNATGIA-----GMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLS 134

Query: 264 IGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTI 323
           +G      +   +    A+   +A  KG  VV++AGN+G        +   +I VGA   
Sbjct: 135 LGC--DCHTTTLEN---AVN--YAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ 187

Query: 324 DRA 326
              
Sbjct: 188 YDR 190

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327

 Score =  102 bits (257), Expect = 8e-24
 Identities = 36/96 (37%), Positives = 46/96 (47%), Gaps = 19/96 (19%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
           R++ F++           + DIVAPGV I S Y         GYA LSGT+M+ PHVAG 
Sbjct: 214 RLSDFTNTNE--------EIDIVAPGVGIKSTYLD------SGYAELSGTAMAAPHVAGA 259

Query: 530 AALIKSLHRD-----WSPAAIRSALVTTASQTGTDG 560
            ALI +L  D      S   I + LV  A+  G   
Sbjct: 260 LALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTA 295

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 43/213 (20%), Positives = 70/213 (32%), Gaps = 63/213 (29%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
           G G IIG+IDTG   +    +++                             +IG     
Sbjct: 40  GAGQIIGVIDTGCQVDHPDLAER-----------------------------IIGGVNLT 70

Query: 199 KGIMDMINASTNTDE--------GLAAGLARGG-----APLAHLAIYKACWDIGC-TDAD 244
                  + +  +D         G  A    G      AP A L I KA    G      
Sbjct: 71  TDYGG--DETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGW 128

Query: 245 VLKAFDKAI------HDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSA 298
           + KA   A+       + + ++++S+G   P  S        A+    A++  ++VV +A
Sbjct: 129 IAKAIRYAVDWRGPKGEQMRIITMSLGG--PTDSEELHD---AVKY--AVSNNVSVVCAA 181

Query: 299 GNDGPVAQTIVNT-----APWIITVGATTIDRA 326
           GN+G   +             +I VGA   D  
Sbjct: 182 GNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLR 214

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279

 Score =  101 bits (253), Expect = 1e-23
 Identities = 41/121 (33%), Positives = 53/121 (43%), Gaps = 31/121 (25%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
             +SFS+ G           D+ APG  I S YP   S     YA LSGTSM+ PHVAG+
Sbjct: 189 NKSSFSTYGSW--------VDVAAPGSSIYSTYP--TS----TYASLSGTSMATPHVAGV 234

Query: 530 AALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAM 589
           A L+ S  +  S + IR+A+  TA +    G                    G VN  KA+
Sbjct: 235 AGLLAS--QGRSASNIRAAIENTADKISGTG---------------TYWAKGRVNAYKAV 277

Query: 590 N 590
            
Sbjct: 278 Q 278

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279

 Score = 56.8 bits (138), Expect = 9e-09
 Identities = 49/194 (25%), Positives = 67/194 (34%), Gaps = 39/194 (20%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIG----- 193
           G G  I I+DTGV       + K            G           N N    G     
Sbjct: 29  GSGAKIAIVDTGVQSNHPDLAGKV---------VGGWDFVDNDSTPQNGN----GHGTHC 75

Query: 194 ARWFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKA 252
           A     GI     A TN   G+A     G AP A +   +   + G  T   V      A
Sbjct: 76  A-----GI---AAAVTNNSTGIA-----GTAPKASILAVRVLDNSGSGTWTAVANGITYA 122

Query: 253 IHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTA 312
              G  V+S+S+G    + +   Q+   A+   +A  KG  VV++AGN G  A       
Sbjct: 123 ADQGAKVISLSLGG--TVGNSGLQQ---AVN--YAWNKGSVVVAAAGNAGNTAPNYPAYY 175

Query: 313 PWIITVGATTIDRA 326
              I V +T  +  
Sbjct: 176 SNAIAVASTDQNDN 189

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320

 Score = 97.8 bits (244), Expect = 3e-22
 Identities = 40/134 (29%), Positives = 54/134 (40%), Gaps = 42/134 (31%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
            +ASFS+R P          ++ APGVDILS YP         Y  L GT+M+ PHV+G+
Sbjct: 212 NIASFSNRQP----------EVSAPGVDILSTYPD------DSYETLMGTAMATPHVSGV 255

Query: 530 AALIKSLHR-------------DWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPF 576
            ALI++ +              D S   +R  L  TA   G  G +              
Sbjct: 256 VALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDAD------------ 303

Query: 577 DIGGGHVNPNKAMN 590
             G G V    A+ 
Sbjct: 304 -YGYGVVRAALAVQ 316

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 21/135 (15%)

Query: 207 ASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGC-TDADVLKAFDKAIHDGVDVLSVSIG 265
           A+ N D G+      G AP   +   +     G  + +D+    ++AI     V     G
Sbjct: 84  AALNNDIGVV-----GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKD-G 137

Query: 266 NEIPLFSYIDQRDSIAIGSF--------------HAIAKGITVVSSAGNDGPVAQTIVNT 311
           + I      D    +   S                A   GI +V+++GN+G  + +    
Sbjct: 138 DGIIAGDPDDDAAEVISMSLGGPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAA 197

Query: 312 APWIITVGATTIDRA 326
            P +I VGA   +  
Sbjct: 198 YPEVIAVGAIDSNDN 212

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434

 Score = 97.3 bits (242), Expect = 2e-21
 Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 16/133 (12%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPP------IGSKDIQGYALLSGTSMSC 523
            VA FSSRGP       +KPD++APG  ILSA           +     YA + GTSM+ 
Sbjct: 201 HVAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMAT 258

Query: 524 PHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHV 583
           P VAG  A ++           + +L+  A   G   +               + G G V
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG--------LGYPNGNQGWGRV 310

Query: 584 NPNKAMNPGLVYD 596
             +K++N   V +
Sbjct: 311 TLDKSLNVAYVNE 323

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434

 Score = 71.5 bits (175), Expect = 4e-13
 Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 28/205 (13%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
           G+G I+ + DTG+        D G   + +   ++G          +N      G    +
Sbjct: 21  GQGQIVAVADTGL--------DTGRNDSSMHEAFRGKITALYALGRTNNANDTNGHGTHV 72

Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTD---ADVLKAFDKAIHD 255
            G +    ++            +G AP A+L         G      +++   F +A   
Sbjct: 73  AGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSA 121

Query: 256 GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVN--TAP 313
           G  + + S G  +      D R+             +T++ +AGN+GP   TI    TA 
Sbjct: 122 GARIHTNSWGAAVNGAYTTDSRNVDDY----VRKNDMTILFAAGNEGPNGGTISAPGTAK 177

Query: 314 WIITVGATTIDRAFPTAITLGNHQV 338
             ITVGAT   R    +     + V
Sbjct: 178 NAITVGATENLRPSFGSYADNINHV 202

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471

 Score = 97.3 bits (242), Expect = 3e-21
 Identities = 27/138 (19%), Positives = 43/138 (31%), Gaps = 38/138 (27%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQ----------------GY 513
            ++ FS+ G N         DI APG            K +                  Y
Sbjct: 348 NLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRY 400

Query: 514 ALLSGTSMSCPHVAGIAALIKS-LHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKE 572
              +GT+++ P V+G  ALI    H +  P      L    +       + +        
Sbjct: 401 IYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFSRY-------- 452

Query: 573 ADPFDIGGGHVNPNKAMN 590
                 G G ++  KA+N
Sbjct: 453 ------GHGELDVYKALN 464

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471

 Score = 60.3 bits (146), Expect = 2e-09
 Identities = 31/136 (22%), Positives = 46/136 (33%), Gaps = 27/136 (19%)

Query: 216 AAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYID 275
           A G   G AP     +Y+           V KA  +A +DG  V+++S+G+ I L     
Sbjct: 211 ANGKLIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDH 270

Query: 276 QRDSIAIGSFH---------AIAKGITVVSSAGNDGPVAQTIVNTA-------------- 312
           Q         +         A  K   VV++AGNDG                        
Sbjct: 271 QTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDV 330

Query: 313 ----PWIITVGATTID 324
                 ++TVG+T   
Sbjct: 331 PASMDNVVTVGSTDQK 346

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395

 Score = 96.0 bits (239), Expect = 3e-21
 Identities = 40/134 (29%), Positives = 54/134 (40%), Gaps = 42/134 (31%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
            +ASFS+R P          ++ APGVDILS YP         Y  L GT+M+ PHV+G+
Sbjct: 287 NIASFSNRQP----------EVSAPGVDILSTYPD------DSYETLMGTAMATPHVSGV 330

Query: 530 AALIKSLHR-------------DWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPF 576
            ALI++ +              D S   +R  L  TA   G  G +              
Sbjct: 331 VALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDAD------------ 378

Query: 577 DIGGGHVNPNKAMN 590
             G G V    A+ 
Sbjct: 379 -YGYGVVRAALAVQ 391

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 47/296 (15%), Positives = 87/296 (29%), Gaps = 63/296 (21%)

Query: 66  EAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFM---- 121
                 I+Y +K         +      K+ ++PGV +V  +    L    SW       
Sbjct: 20  LGIGGHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQ 78

Query: 122 -------GLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKG 174
                  G+   ++    S          + ++DTGV  +    +               
Sbjct: 79  PAQTIPWGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAANI---------AWC 129

Query: 175 ICQKGEKFNSSNCNRKLIGARWFIKGIMDM---------INASTNTDEGLAAGLARGGAP 225
           +     K ++   +              D            A+ N D G+      G AP
Sbjct: 130 VSTLRGKVSTKLRD------------CADQNGHGTHVIGTIAALNNDIGVV-----GVAP 172

Query: 226 LAHLAIYKACWDIGC-TDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGS 284
              +   +     G  + +D+    ++AI     V     G+ I      D    +   S
Sbjct: 173 GVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKD-GDGIIAGDPDDDAAEVISMS 231

Query: 285 F--------------HAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRA 326
                           A   GI +V+++GN+G  + +     P +I VGA   +  
Sbjct: 232 LGGPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDN 287

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340

 Score = 93.2 bits (232), Expect = 1e-20
 Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 27/126 (21%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPP-IGSKDIQGYALLSGTSMSCPHVAG 528
             ASFS+ G +         D+ APG DILS             Y+ ++GTSM+ PHV+G
Sbjct: 233 IRASFSNYGVD--------VDLAAPGQDILSTVDSGTRRPVSDAYSFMAGTSMATPHVSG 284

Query: 529 IAALIKSL----HRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVN 584
           +AAL+ S     +++ +PA ++  LV+T S                        G G V+
Sbjct: 285 VAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRAL--------------GSGIVD 330

Query: 585 PNKAMN 590
              A+N
Sbjct: 331 AEAAVN 336

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 44/220 (20%), Positives = 74/220 (33%), Gaps = 49/220 (22%)

Query: 139 GEGTIIGIIDTGVWP---------------ESESFSDKGMGQAPVPPHWKGICQKGEKFN 183
           G+  ++ ++DTG+                  +   S  G G+   P              
Sbjct: 31  GQNVVVAVVDTGILHHRDLNANVLPGYDFISNSQISLDGDGRDADPFDEGDWFDNWACGG 90

Query: 184 SSNCNRKLIGARW---FIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGC 240
             +  ++   + W    + G    I A TN   G+A     G A  A +   +A    G 
Sbjct: 91  RPDPRKERSDSSWHGSHVAGT---IAAVTNNRIGVA-----GVAYGAKVVPVRALGRCGG 142

Query: 241 TDADVLKAFDKAI----------HDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAK 290
            D+D+      A            +   V+++S+G++              I    A   
Sbjct: 143 YDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSD----GQCSYNAQTMIDR--ATRL 196

Query: 291 GITVVSSAGNDGPVAQTIVNTAP----WIITVGATTIDRA 326
           G  VV +AGN+    Q   NT P     +++VGATT    
Sbjct: 197 GALVVVAAGNEN---QNASNTWPTSCNNVLSVGATTSRGI 233

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278

 Score = 91.1 bits (227), Expect = 3e-20
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 12/86 (13%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
             +SFS+ G       +   DI APG  I S++    S        +SGTSM+ PHVAG+
Sbjct: 186 SRSSFSNYGT-----CL---DIYAPGSSITSSW--YTSNS--ATNTISGTSMASPHVAGV 233

Query: 530 AALIKSLHRDWSPAAIRSALVTTASQ 555
           AAL    + + SPA + + L T A+ 
Sbjct: 234 AALYLDENPNLSPAQVTNLLKTRATA 259

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276

 Score = 90.3 bits (225), Expect = 5e-20
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 12/86 (13%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
             ASFS+ G       V   D+ APG  I SA+    S        L+GTSM+ PHVAG+
Sbjct: 184 ARASFSNYGS-----CV---DLFAPGASIPSAW--YTSDT--ATQTLNGTSMATPHVAGV 231

Query: 530 AALIKSLHRDWSPAAIRSALVTTASQ 555
           AAL    +   +PA++ SA++  A+ 
Sbjct: 232 AALYLEQNPSATPASVASAILNGATT 257

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 18/118 (15%)

Query: 214 GLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVD--VLSVSIGNEIPL 270
           G   G+  G A   +L   +     G  + + V+   D    +     V ++S+G     
Sbjct: 76  GTIGGVTYGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLG----- 130

Query: 271 FSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNT----APWIITVGATTID 324
                  D+ A+ +  +IA G+    +AGND   A    N         +TVGATT  
Sbjct: 131 GGVSTALDN-AVKN--SIAAGVVYAVAAGNDNANA---CNYSPARVAEALTVGATTSS 182

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284

 Score = 90.3 bits (225), Expect = 5e-20
 Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 14/86 (16%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
             +SFS+ G       V   D+ APG  I SA+         GY  +SGTSM+ PHVAG+
Sbjct: 184 SRSSFSNWGS-----CV---DLFAPGSQIKSAW--YDG----GYKTISGTSMATPHVAGV 229

Query: 530 AALIKSLHRDWSPAAIRSALVTTASQ 555
           AAL    +   +P  +   L + AS+
Sbjct: 230 AALYLQENNGLTPLQLTGLLNSRASE 255

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546

 Score = 90.0 bits (223), Expect = 1e-18
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
           +  +  + G N     V   D+ APG DI+ A           +   SGTS +  HVAGI
Sbjct: 192 QPVTLGTLGTNF-GRCV---DLFAPGEDIIGAS--SDCST--CFVSQSGTSQAAAHVAGI 243

Query: 530 AALIKSLHRDWSPAAIRSALVTTASQ 555
           AA++ S   + + A +R  L+  +++
Sbjct: 244 AAMMLSAEPELTLAELRQRLIHFSAK 269

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546

 Score = 45.3 bits (107), Expect = 8e-05
 Identities = 37/230 (16%), Positives = 68/230 (29%), Gaps = 57/230 (24%)

Query: 134 TESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIG 193
              + G    + ++DT +  +                                  R ++ 
Sbjct: 20  QPPDGGSLVEVYLLDTSIQSDHREIE----------------------------GRVMVT 51

Query: 194 ARWFIKGIMDMINASTNTDE--------GLAAGLARGGAPLAHLAIYKACWDIG-CTDAD 244
               +            +          G+ +G   G A  A +   +     G  T + 
Sbjct: 52  DFENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRDAGVAKGASMRSLRVLNCQGKGTVSG 111

Query: 245 VLKAFDKAIHD------GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSA 298
            L   +           G  V+ + +        Y    ++ A         G+ +V++A
Sbjct: 112 TLIGLEFIRKSQLVQPVGPLVVLLPLA-----GGYSRVLNA-ACQR--LARAGVVLVTAA 163

Query: 299 GNDGPVAQTIV-NTAPWIITVGATTIDRAFPTAITLG-NHQVLWGQSIDI 346
           GN    A      +AP +ITVGAT       T  TLG N    +G+ +D+
Sbjct: 164 GNFRDDACLYSPASAPEVITVGATNAQDQPVTLGTLGTN----FGRCVDL 209

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692

 Score = 88.1 bits (218), Expect = 6e-18
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
           +  +  + G N     V   D+ APG DI+ A           +   SGTS +  HVAGI
Sbjct: 344 QPVTLGTLGTNF-GRCV---DLFAPGEDIIGAS--SDCST--CFVSQSGTSQAAAHVAGI 395

Query: 530 AALIKSLHRDWSPAAIRSALVTTASQ 555
           AA++ S   + + A +R  L+  +++
Sbjct: 396 AAMMLSAEPELTLAELRQRLIHFSAK 421

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692

 Score = 74.3 bits (182), Expect = 9e-14
 Identities = 53/335 (15%), Positives = 101/335 (30%), Gaps = 76/335 (22%)

Query: 36  IVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKI 95
           +V +  K+        ++  R  +         K  IL+ +     GF  +++    E  
Sbjct: 79  VVVL--KEETHLSQSERTARRLQAQAARRGYLTK--ILHVFHGLLPGFLVKMSGDLLELA 134

Query: 96  AELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTE---SNMGEGTIIGIIDTGVW 152
            +LP V  +  +  +   +   W    L      +  + E    + G    + ++DT + 
Sbjct: 135 LKLPHVDYIEEDSSVFAQSI-PW---NLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQ 190

Query: 153 PESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTD 212
            +                                  R ++     +            + 
Sbjct: 191 SDHREIE----------------------------GRVMVTDFENVPEEDGTRFHRQASK 222

Query: 213 E--------GLAAGLARGGAPLAHLAIYKA--CWDIGCTDADVLKAFDKAIHD------G 256
                    G+ +G   G A  A +   +   C   G T +  L   +           G
Sbjct: 223 CDSHGTHLAGVVSGRDAGVAKGASMRSLRVLNCQGKG-TVSGTLIGLEFIRKSQLVQPVG 281

Query: 257 VDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNT----A 312
             V+ + +        Y    ++ A         G+ +V++AGN    A          A
Sbjct: 282 PLVVLLPLA-----GGYSRVLNA-ACQR--LARAGVVLVTAAGNFRDDAC---LYSPASA 330

Query: 313 PWIITVGATTIDRAFPTAITLG-NHQVLWGQSIDI 346
           P +ITVGAT       T  TLG N    +G+ +D+
Sbjct: 331 PEVITVGATNAQDQPVTLGTLGTN----FGRCVDL 361

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279

 Score = 82.6 bits (205), Expect = 2e-17
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 15/86 (17%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
             ++FS+ G       V   DI APG  I S +  IG         +SGTSM+ PH+AG+
Sbjct: 189 VRSTFSNYGR-----VV---DIFAPGTSITSTW--IGG----RTNTISGTSMATPHIAGL 234

Query: 530 AALIKSLHRDWSPAAIRSALVTTASQ 555
           AA +  L    S  A+   + T +++
Sbjct: 235 AAYLFGLEGG-SAGAMCGRIQTLSTK 259

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279

 Score = 81.5 bits (202), Expect = 4e-17
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 15/86 (17%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
           R +SFS+ G       +   DI  PG DILS +  IG         +SGTSM+ PHVAG+
Sbjct: 188 RRSSFSNYGS-----VL---DIFGPGTDILSTW--IGG----STRSISGTSMATPHVAGL 233

Query: 530 AALIKSLHRDWSPAAIRSALVTTASQ 555
           AA + +L    + A+    +  TA++
Sbjct: 234 AAYLMTLG-KTTAASACRYIADTANK 258

>1wib_A 60S ribosomal protein L12; N-terminal domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Mus musculus} SCOP: d.47.1.1 Length = 92

 Score = 61.1 bits (148), Expect = 8e-12
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 796 PPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGY 855
           PPK            ++ L    G+      + P +G  G++      D    T D  G 
Sbjct: 8   PPKFDPNEVK-----VVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGL 62

Query: 856 VIPVEITVYDDRSFTFILKTPPASVLLLKAAG 887
            I V++T+  +R     +  P AS L   ++G
Sbjct: 63  RITVKLTI-QNRQAQIEV-VPSASALSGPSSG 92

>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471

 Score = 59.3 bits (143), Expect = 3e-09
 Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 11/122 (9%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQG-YALLSGTSMSCPHVAG 528
            V  +S    ++                  +    + +   Q      +GTS S P  AG
Sbjct: 218 NVPWYSEACSST--------LATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAG 269

Query: 529 IAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKA 588
           I AL    +++ +   ++  +V T+     +  +    G  RK +  +  G G ++    
Sbjct: 270 IIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSY--GYGLLDAGAM 327

Query: 589 MN 590
           + 
Sbjct: 328 VA 329

>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503

 Score = 56.7 bits (136), Expect = 3e-08
 Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 10/122 (8%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
               +S      M            G  I S+                GTS + P  AG+
Sbjct: 231 LHPPYSEGCSAVM----AVTYSSGSGEYIHSSDINGRC-----SNSHGGTSAAAPLAAGV 281

Query: 530 AALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAM 589
             L+   + + +   ++   + +A     +    + + +  K+      G G ++ +K +
Sbjct: 282 YTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSH-RYGFGKIDAHKLI 340

Query: 590 NP 591
             
Sbjct: 341 EM 342

>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503

 Score = 48.2 bits (114), Expect = 9e-06
 Identities = 51/286 (17%), Positives = 82/286 (28%), Gaps = 39/286 (13%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
           G G +  I+D G+  E+E   D    +      W             + +    G R   
Sbjct: 53  GAGVVAAIVDDGLDYENEDLKDNFCAEGS----WDFNDNTNLPKPRLSDDYH--GTR--C 104

Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVD 258
            G    I A    +         G    A ++  +       T  D   +    + D  D
Sbjct: 105 AGE---IAAKKGNNFCGV-----GVGYNAKISGIRIL-SGDITTEDEAASLIYGL-DVND 154

Query: 259 VLSVSIGNEIPLFSYIDQRDSIAIGSFHAI-----AKGITVVSSAGNDGPVAQTIV---- 309
           + S S G            D +       +     +KG   V ++GN G           
Sbjct: 155 IYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGY 214

Query: 310 NTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSA 369
             + + IT+GA       P              ++     S G     +S  I       
Sbjct: 215 TNSIYSITIGAIDHKDLHPPYSE-------GCSAVMAVTYSSGSGEYIHSSDI---NGRC 264

Query: 370 NDCRQG-SLNATLAAGKIILCFS-RPDTQDIQSAAISVTQAGGVGL 413
           ++   G S  A LAAG   L     P+        +S+  A G+  
Sbjct: 265 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEK 310

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 3e-08
 Identities = 106/674 (15%), Positives = 187/674 (27%), Gaps = 222/674 (32%)

Query: 244 DVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKG---ITVVSSAGN 300
           D+L  F+ A  D  D   V       + S  ++ D I I S  A++        + S   
Sbjct: 20  DILSVFEDAFVDNFDCKDVQ-DMPKSILSK-EEIDHI-IMSKDAVSGTLRLFWTLLSKQE 76

Query: 301 DGPVAQTIVNTA-----PWIIT-VGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFT 354
           +  + Q  V         ++++ +       +  T + +     L+              
Sbjct: 77  E--MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-------------- 120

Query: 355 GLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDT-QDIQSAAISVTQAGGVGL 413
                          ND      N   A   +    SR      ++ A + +  A  V +
Sbjct: 121 ---------------ND------NQVFAKYNV----SRLQPYLKLRQALLELRPAKNVLI 155

Query: 414 IYAQFHTDGLDSCNLIPCIKVNYEVGTQIL------SYIRRARSP-------IAKLSSPE 460
                   G+               G   +      SY  + +         +   +SPE
Sbjct: 156 -----D--GVLGS------------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 461 TVIGDLVS--PRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSG 518
           TV+  L     ++    +   +  S                     +    IQ    L  
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSN------------------IKLRIHSIQAE--LRR 236

Query: 519 TSMSCPHVAGIAALIKSLHRD-WSPAAIRS------ALVTTASQTGTDG----------M 561
              S P+      L+  L  +  +  A  +       L+TT  +  TD           +
Sbjct: 237 LLKSKPYE--NCLLV--L-LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 562 NIFEEGSTRKEA----------DPFDIGGGHVNPNKAM--NPGLVYDITVEDYIQFLC-- 607
           +      T  E            P D+      P + +  NP     I  E     L   
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDL------PREVLTTNP-RRLSIIAESIRDGLATW 344

Query: 608 --FMGHNDASISRLTKSKINCLKNN-------HLAL---DLNLPSITIPNLHNNETVTVT 655
             +   N   ++ + +S +N L+          L++     ++P+I +  +  +   +  
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 656 RKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKI----LSFRVTFFSNHKVHPV 711
             V N         +LVE                  TI I    L  +V   + + +H  
Sbjct: 405 MVVVN----KLHKYSLVEKQ------------PKESTISIPSIYLELKVKLENEYALHRS 448

Query: 712 PDAEYR----FGSLTWTDDSVDSRFNGFLSIHFNESSKSNQQLSCSLFP----------- 756
               Y     F S       +D  F   +  H             +LF            
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL---KNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 757 ------SAVNLSS---NSNVSLPFY-----DNKVKPSPLLSSTPRFLTVIAMAPPKPGGK 802
                 +A N S    N+   L FY     DN  K   L+++   FL       PK    
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL-------PKIEEN 558

Query: 803 AKAKKVLGLIKLAL 816
               K   L+++AL
Sbjct: 559 LICSKYTDLLRIAL 572

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 3e-05
 Identities = 94/686 (13%), Positives = 185/686 (26%), Gaps = 228/686 (33%)

Query: 4   RKTQLLRILVVILLQHHLQISLTLVGATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLG 63
             +  LR+   +L +                      E+  +          +F+  VL 
Sbjct: 60  AVSGTLRLFWTLLSK---------------------QEEMVQ----------KFVEEVL- 87

Query: 64  SKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFMGL 123
                 +  L S         + +T+   E+   L    QV      K + +R   ++ L
Sbjct: 88  ---RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA----KYNVSRLQPYLKL 140

Query: 124 HYYQSSKNLSTESNMGEGTIIGIIDTG-VWPESESFSDKGMGQA-PVPPHWKGICQKGEK 181
              Q+   L    N+    I G++ +G  W   +      +         W         
Sbjct: 141 R--QALLELRPAKNV---LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW--------- 186

Query: 182 FNSSNCNRKLIGARWFIKGIMDMINA-STNTDEGLAAGLARGGAP-------------LA 227
            N  NCN          + +++M+       D    +                     L 
Sbjct: 187 LNLKNCNSP--------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 228 HLAIYKAC-------WDIGCTDADVLKAFD-----------KAIHDGVDVLS---VSIGN 266
               Y+ C        +     A    AF+           K + D +   +   +S+ +
Sbjct: 239 KSKPYENCLLVLLNVQN-----AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 267 EIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIIT-VGATTIDR 325
                +     +  ++     + K    +     D P    ++ T P  ++ +  +  D 
Sbjct: 294 HSMTLT---PDEVKSL-----LLK---YLDCRPQDLPRE--VLTTNPRRLSIIAESIRDG 340

Query: 326 AFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGK 385
                 T  N    W + ++  K++      + +     +P    + R+           
Sbjct: 341 ----LATWDN----W-KHVNCDKLTTII-ESSLN---VLEPA---EYRK----------- 373

Query: 386 IILCFSR----PDTQDIQSAAISV----TQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYE 437
               F R    P +  I +  +S+         V ++  + H   L         K   E
Sbjct: 374 ---MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-------VEKQPKE 423

Query: 438 VGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVD 497
               I S     +  +    +    I D  +      S              D++ P +D
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD-------------DLIPPYLD 470

Query: 498 --ILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI-----AALIKSLHRD--WSPAAIRSA 548
               S +  I      G+           H+  I       L + +  D  +    IR  
Sbjct: 471 QYFYS-H--I------GH-----------HLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510

Query: 549 LVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCF 608
             +TA       +N  ++               ++  N        Y+  V   + FL  
Sbjct: 511 --STAWNASGSILNTLQQ---------LKFYKPYICDNDP-----KYERLVNAILDFLPK 554

Query: 609 MGHNDASISRLTKSKINCLKNNHLAL 634
           +  N      L  SK   L    +AL
Sbjct: 555 IEEN------LICSKYTDLL--RIAL 572

>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P Length = 114

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 4/78 (5%)

Query: 36  IVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKI 95
           +V +  K+        ++  R  +         K  IL+ +     GF  +++    E  
Sbjct: 41  VVVL--KEETHLSQSERTARRLQAQAARRGYLTK--ILHVFHGLLPGFLVKMSGDLLELA 96

Query: 96  AELPGVVQVIPNGILKLH 113
            +LP V  +  +  +   
Sbjct: 97  LKLPHVDYIEEDSSVFAQ 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	954
3i6s_A	649	Subtilisin-like protease; PA-domain, FN3-domain, h	100.0
3vta_A	621	Cucumisin; subtilisin-like fold, serine protease,	100.0
1xf1_A	926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	100.0
3bbo_K	224	Ribosomal protein L11; large ribosomal subunit, sp	100.0
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	100.0
2z2z_A	395	TK-subtilisin precursor; thermococcus kodakaraensi	100.0
1mms_A	140	Protein (ribosomal protein L11); RNA-protein compl	100.0
3t41_A	471	Epidermin leader peptide processing serine protea;	100.0
1y9z_A	441	Alkaline serine protease; subtilisin-like alpha/be	100.0
2p4e_P	692	Proprotein convertase subtilisin/kexin type 9; pro	100.0
3iz5_J	166	60S ribosomal protein L12 (L11P); eukaryotic ribos	100.0
3egv_B	146	50S ribosomal protein L11, ribosomal protein L11 m	100.0
2ftc_G	145	L11MT, MRP-L11, 39S ribosomal protein L11, mitocho	100.0
1vq8_I	162	50S ribosomal protein L11P; ribosome 50S, protein-	100.0
2zkr_i	165	60S ribosomal protein L12; protein-RNA complex, 60	100.0
1r6v_A	671	Subtilisin-like serine protease; sandwich domain,	100.0
3j21_H	164	50S ribosomal protein L11P; archaea, archaeal, KIN	100.0
3r8s_I	141	50S ribosomal protein L11; protein biosynthesis, R	100.0
4h6x_A	357	Thiazoline oxidase/subtilisin-like protease; hydro	100.0
1r0r_E	274	Subtilisin carlsberg; high resolution, serine prot	100.0
1dbi_A	280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	100.0
1gci_A	269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	100.0
1to2_E	281	Subtilisin BPN'; serine protease, hydrolase; HET:	100.0
2x8j_A	327	Intracellular subtilisin protease; hydrolase, seri	100.0
2ixt_A	310	36KDA protease; serine protease, sphericase, subti	100.0
1thm_A	279	Thermitase; hydrolase(serine protease); 1.37A {The	100.0
3zxy_A	282	Subtilisin-like protein; hydrolase; 1.58A {Prochlo	100.0
2z30_A	320	TK-subtilisin; thermococcus kodakaraensis, hydrola	100.0
3lxu_X	1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	100.0
4h6w_A	306	N-terminal cyanobactin protease; hydrolase; 2.45A	100.0
2iy9_A	347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	100.0
3lpc_A	340	APRB2; protease, subtilase, virulence factor, hydr	100.0
1wmd_A	434	Protease; alpha-beta hydrolase fold, jelly-roll be	100.0
1sh7_A	284	Extracellular subtilisin-like serine proteinase; c	100.0
2oxa_A	600	Extracellular serine protease; kexin, hydrolase; 1	100.0
2pwa_A	279	Proteinase K; structure, alanine boronic acid, hyd	100.0
4dzt_A	276	Aqualysin-1, aqualysin-I; serine protease, calcium	100.0
2b6n_A	278	Proteinase K; S binding, substrate specificity, pr	100.0
3f7m_A	279	Alkaline serine protease VER112; verticillium psal	100.0
1p8j_A	471	Furin precursor; prohormone convertase, SPC1, PACE	100.0
2qtw_B	546	Proprotein convertase subtilisin/kexin type 9; cor	100.0
2id4_A	503	Kexin; KEX2, kexin, furin, proprotein, prohormone,	100.0
3hjr_A	600	Extracellular serine protease; kexin, hydrolase; 1	100.0
1wib_A	92	60S ribosomal protein L12; N-terminal domain, stru	99.97
3cjs_B	72	50S ribosomal protein L11, ribosomal protein L11 m	99.95
1hc8_A	76	Ribosomal protein L11; ribosome, ribosomal RNA, te	99.95
1qa6_A	67	Ribosomal protein L11; ribosomal RNA, tertiary str	99.9
1t1e_A	552	Kumamolisin; proenzyme, prosubtilase, activation m	99.89
1ga6_A	372	Serine-carboxyl proteinase; serine-carboxyl protei	99.82
2w2n_P	114	Proprotein convertase subtilisin/kexin type 9; hyd	99.02
3edy_A	544	Tripeptidyl-peptidase 1; protease, TPP1, sedolisin	98.92
3cnq_P	80	Subtilisin BPN'; uncleaved, proenzyme, substrate c	98.83
2qtw_A	124	Proprotein convertase subtilisin/kexin type 9 Pro;	98.63
1v5i_B	76	POIA1, IA-1=serine proteinase inhibitor; protease-	98.47
3icu_A	194	E3 ubiquitin-protein ligase RNF128; E3 ligase, ene	98.45
2z30_B	65	TK-subtilisin; thermococcus kodakaraensis, hydrola	97.0
2ek8_A	421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	96.36
3iib_A	444	Peptidase M28; YP_926796.1, structural genomics, J	94.93
3kas_A	640	Transferrin receptor protein 1; transferrin recept	94.6
3fed_A	707	Glutamate carboxypeptidase III; metallopeptidase,	94.46
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	92.04
1y9z_A	441	Alkaline serine protease; subtilisin-like alpha/be	87.37
3lxu_X	1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	85.32

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*

Probab=100.00  E-value=2.3e-120  Score=1094.84  Aligned_cols=597  Identities=36%  Similarity=0.596  Sum_probs=544.5

Q ss_pred             ccccccccccccccCccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccc
Q 042478          114 TTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIG  193 (954)
Q Consensus       114 t~~s~~~~gl~~~~~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiig  193 (954)
                      |+++|+|+||+.   ...+|..+.+|+||+|||||||||++||+|.+.+++  |+|.+|+|.|+.+.+|+...||+|++|
T Consensus         1 Tt~s~~flgl~~---~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~--p~p~~wkg~c~~g~~f~~~~cN~kiig   75 (649)
T 3i6s_A            1 TTHTSDFLKLNP---SSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMP--EIPKRWKGICKPGTQFNASMCNRKLIG   75 (649)
T ss_dssp             CCSHHHHTTCCS---SSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCC--CCCTTCCCCBCCBTTBCTTSCCSSEEE
T ss_pred             CCCChHHcCCCC---chhhHhccCCCCCCEEEEEccCCCCCChhhccCCCC--CCccccccccccCccccccccccceee
Confidence            689999999974   578999999999999999999999999999999999  999999999999999999999999999


Q ss_pred             eeccccCCC--------------CCCCchhhhcccccccc--------------ceeccCCCcEEEEEEecCCCCChHHH
Q 042478          194 ARWFIKGIM--------------DMINASTNTDEGLAAGL--------------ARGGAPLAHLAIYKACWDIGCTDADV  245 (954)
Q Consensus       194 a~~~~~~~~--------------~~~G~GTa~v~G~a~G~--------------~~GvAP~A~L~~yKv~~~~g~~~~di  245 (954)
                      +++|.+++.              +.+|||| |++|+++|.              ++||||+|+|++||+|+..||..+++
T Consensus        76 ~~~f~~~~~~~~~~~~~~~~~~~D~~GHGT-hVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i  154 (649)
T 3i6s_A           76 ANYFNKGILANDPTVNITMNSARDTDGHGT-HCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDL  154 (649)
T ss_dssp             EEECCHHHHHHCTTCCCTTCSSBCSSSHHH-HHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTEECHHHH
T ss_pred             eEeccCcccccccccccCCCCCCCCCCcHH-HHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCCCCHHHH
Confidence            999974321              2238999 999887754              58999999999999999888999999


Q ss_pred             HHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCC
Q 042478          246 LKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDR  325 (954)
Q Consensus       246 l~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~  325 (954)
                      ++||+||+++|+||||||||+.. .+ +..  ++++.++++|+++||+||+||||+|+...++.+.+||+|+|||++.||
T Consensus       155 ~~Ai~~A~~~gvdVIn~SlG~~~-~~-~~~--~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr  230 (649)
T 3i6s_A          155 IAAMDQAVADGVDMISISYGYRF-IP-LYE--DAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDR  230 (649)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCCS-CC-GGG--CHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSC
T ss_pred             HHHHHHHHHcCCCEEEeCCccCC-cc-cch--hHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeeccc
Confidence            99999999999999999999874 34 777  899999999999999999999999999999999999999999999999


Q ss_pred             CccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccc--cceEEEEecCCCCchHHHHHH
Q 042478          326 AFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLA--AGKIILCFSRPDTQDIQSAAI  403 (954)
Q Consensus       326 ~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v--~Gkivl~~~~~g~~~~~~k~~  403 (954)
                      .|+..+.++|++++.|.+++........||+++..       ....|.+..++..++  +||||+|+|  |.|.+.+|..
T Consensus       231 ~f~~~~~lgng~~~~g~sl~~~~~~~~~~plv~~~-------~~~~C~~~~l~~~~vdl~GkIvlc~~--g~~~~~~k~~  301 (649)
T 3i6s_A          231 TFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNK-------TLSDCSSEELLSQVENPENTIVICDD--NGDFSDQMRI  301 (649)
T ss_dssp             EEEEEEEETTSCEEEEECCCSSCBCEEEEEEECCT-------TTTTCCCHHHHTTSSSGGGCEEEECC--CSCHHHHHHH
T ss_pred             ceeeEEEeCCCcEEeeeecccCcccCcceeeEecc-------cccccccccccccccccCCcEEEEeC--CCccHHHHHH
Confidence            99999999999999999998877666789999864       467899988888878  999999999  8999999999


Q ss_pred             HHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCC
Q 042478          404 SVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMS  483 (954)
Q Consensus       404 ~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~  483 (954)
                      +++++|+.|+|++|+......+.+.+|+++++.++|+.|++|++++.+++++|.+..+..+..+.+.++.||||||+...
T Consensus       302 ~~~~~Ga~g~i~~n~~~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~  381 (649)
T 3i6s_A          302 ITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSY  381 (649)
T ss_dssp             HHHHTCSEEEEECCCGGGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTC
T ss_pred             HHHhcCceEEEEecCccccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCC
Confidence            99999999999999884446778999999999999999999999999999999999999888899999999999999988


Q ss_pred             CCCcCCeEEecCCceEecCCCCCCC--------CCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 042478          484 PAVLKPDIVAPGVDILSAYPPIGSK--------DIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQ  555 (954)
Q Consensus       484 ~~~lKPDI~APG~~I~sa~~~~~~~--------~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~  555 (954)
                      +++|||||+|||++|+++|+.....        ....|..+||||||||||||++|||||+||+|||++||++||+||++
T Consensus       382 ~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~  461 (649)
T 3i6s_A          382 LGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADP  461 (649)
T ss_dssp             TTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBC
T ss_pred             CCccCCeEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhccccc
Confidence            8999999999999999999874321        12689999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccCCCCCCCCCCCCCCCccCcccccCCCccccCCchhHHHhhhcCCCCcccceeccccccc--ccCCCcCc
Q 042478          556 TGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKIN--CLKNNHLA  633 (954)
Q Consensus       556 ~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~pglvyd~~~~dy~~flc~~g~~~~~i~~~~~~~~~--c~~~~~~~  633 (954)
                      +++.+.|+.++. ....+++++||+|+|||.+|++||||||++++||++|||++||+..+|+.|+++++.  |+.   ..
T Consensus       462 ~~~~g~~i~~~~-~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~~---~~  537 (649)
T 3i6s_A          462 LDNTRKPIKDSD-NNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSN---PS  537 (649)
T ss_dssp             BCTTSSBCEETT-TSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CCC---CC
T ss_pred             ccCCCCcccccc-cCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCCC---ch
Confidence            999999998862 567889999999999999999999999999999999999999999999999998878  975   46


Q ss_pred             cCCCCCeeeccc-CCCCce-----EEEEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCCc
Q 042478          634 LDLNLPSITIPN-LHNNET-----VTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHK  707 (954)
Q Consensus       634 ~~lN~psi~~~~-~~~~~~-----~tv~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~  707 (954)
                      .|||||||++.+ +  .++     ++|+|||||||+..++|+++|++|+|++|+|+|.+|+|.+.+|+++|+|||+....
T Consensus       538 ~~lNyPs~~~~~~~--~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~  615 (649)
T 3i6s_A          538 ADLNYPSFIALYSI--EGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGD  615 (649)
T ss_dssp             CCCCCSSEEEEECC--SSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC
T ss_pred             hhcCCCcEEeeccc--CCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEeccc
Confidence            799999999987 5  444     89999999999999999999999999999999999999989999999999998753


Q ss_pred             cCCCCCCCceEEEEEEEC--CcceEEcCcccccc
Q 042478          708 VHPVPDAEYRFGSLTWTD--DSVDSRFNGFLSIH  739 (954)
Q Consensus       708 ~~~~~~~~~~~G~l~w~~--~~~~vr~P~~v~~~  739 (954)
                          ..++|.||+|+|+|  ++|.||+||+|.+.
T Consensus       616 ----~~~~~~fg~l~w~~~~~~h~vrsPi~v~~~  645 (649)
T 3i6s_A          616 ----EGQSRNVGSITWVEQNGNHSVRSPIVTSPI  645 (649)
T ss_dssp             -------CCCEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred             ----CCCceEEEEEEEEcCCCCeEEEEeEEEEEc
Confidence                45679999999999  89999999999775

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}

Probab=100.00  E-value=2.3e-109  Score=1001.41  Aligned_cols=586  Identities=39%  Similarity=0.675  Sum_probs=489.6

Q ss_pred             ccccccccccccccCccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccc
Q 042478          114 TTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIG  193 (954)
Q Consensus       114 t~~s~~~~gl~~~~~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiig  193 (954)
                      ||++|+|+||+.     .+|.++.+|+||+|||||||||++||+|+|++++  ++|.+|+|.|+.+.+|.   ||+|++|
T Consensus         1 tt~s~~flGl~~-----~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~--~~~~~w~g~~~~~~~~~---~n~k~ig   70 (621)
T 3vta_A            1 TTRSWDFLGFPL-----TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFS--PPPPKWKGTCETSNNFR---CNRKIIG   70 (621)
T ss_dssp             CCSHHHHTTCCT-----TCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCC--CCCTTCCCCBCCSSSCC---CCSSEEE
T ss_pred             CCCChhHcCCCc-----cccccCCCCCCCEEEEEecCCCCCChhhcCCCCC--CcccccccccccCCCcc---cCcceee
Confidence            689999999964     6899999999999999999999999999999999  99999999999988774   9999999


Q ss_pred             eeccccCCCC----------CCCchhhhcccccccc--------------ceeccCCCcEEEEEEecCCCCChHHHHHHH
Q 042478          194 ARWFIKGIMD----------MINASTNTDEGLAAGL--------------ARGGAPLAHLAIYKACWDIGCTDADVLKAF  249 (954)
Q Consensus       194 a~~~~~~~~~----------~~G~GTa~v~G~a~G~--------------~~GvAP~A~L~~yKv~~~~g~~~~dil~Ai  249 (954)
                      +++|..++..          .+|||| |++|+++|.              ++||||+|+|++||||++.||..+++++||
T Consensus        71 ~~~~~~~~~~~~~~~~~p~D~~GHGT-HvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~di~~a~  149 (621)
T 3vta_A           71 ARSYHIGRPISPGDVNGPRDTNGHGT-HTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAY  149 (621)
T ss_dssp             EEECCCSSSCCTTCCSSSBCSSSHHH-HHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTEECHHHHHHHH
T ss_pred             eeecccCCccCCCCCCCCCCCCcCHH-HHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCCCCHHHHHHHH
Confidence            9999765432          128999 999988763              589999999999999999999999999999


Q ss_pred             HHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccc
Q 042478          250 DKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPT  329 (954)
Q Consensus       250 d~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~  329 (954)
                      |||+++|+||||||||+..+.. ++.  +++++++++|+++||+||+||||+|+...++++.+||+++|+|++.||.|..
T Consensus       150 ~~a~~~g~dVin~SlG~~~~~~-~~~--~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~  226 (621)
T 3vta_A          150 DDAIADGVDIISLSVGGANPRH-YFV--DAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVT  226 (621)
T ss_dssp             HHHHHHTCSEEEECCCCCCGGG-GGG--CTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEE
T ss_pred             HHHHHhCCCEEEecCCCCCCCC-cCC--cHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeecccccee
Confidence            9999999999999999876333 555  8999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCeEEeeeeeeccCcCCceeeeeeccccc---cCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHH
Q 042478          330 AITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIA---FDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVT  406 (954)
Q Consensus       330 ~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~---~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~  406 (954)
                      .+.++++..+.+.++...  ....++++......   ........|.+..+++.+++|||++|++  +   +..+..+..
T Consensus       227 ~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~--~---~~~~~~~~~  299 (621)
T 3vta_A          227 QVQIGNGQSFQGVSINTF--DNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEA--S---FGPHEFFKS  299 (621)
T ss_dssp             EEEETTSCEEEEBCCCCS--CCEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSS--C---CCHHHHHHH
T ss_pred             eEEeccCceeeeeecccC--CCcccccccccccccccccccccccccccccccccccceEEEEec--C---CChhHHhhh
Confidence            999999999988887643  34466777554322   2233456799999999999999999987  3   235666778


Q ss_pred             HcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCC
Q 042478          407 QAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAV  486 (954)
Q Consensus       407 ~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~  486 (954)
                      .+|+.++|++++..+ ..+.+.+|..+++..++..++.|+..+..+.+.+....+.. ....+.++.||||||+...+++
T Consensus       300 ~~Ga~gvi~~~~~~~-~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~~-~~~~~~va~FSSrGP~~~~~~i  377 (621)
T 3vta_A          300 LDGAAGVLMTSNTRD-YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTIL-NASAPVVVSFSSRGPNRATKDV  377 (621)
T ss_dssp             HTTCSEEEEECSCCS-SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEEE-CTTCCCBCTTSCCCSCTTCTTS
T ss_pred             hcceeEEEEEecCCC-cccccccceEEECHHHHHHHHHHHhccCCcceEEecceEec-cCCCCceeeecCCCCCCCCCCe
Confidence            899999999987654 34567899999999999999999999998888886665544 5678999999999999888999


Q ss_pred             cCCeEEecCCceEecCCCCCCC----CCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcc
Q 042478          487 LKPDIVAPGVDILSAYPPIGSK----DIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMN  562 (954)
Q Consensus       487 lKPDI~APG~~I~sa~~~~~~~----~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~p  562 (954)
                      +||||+|||++|+|+|+.....    ....|..|||||||||||||++|||||+||+|+|++||++||+||++++..+  
T Consensus       378 lKPDI~APG~~Ilsa~~~~~~~~~~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~~--  455 (621)
T 3vta_A          378 IKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARF--  455 (621)
T ss_dssp             CSCCEEEECSSEEEECCSSSCBTTBCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTTT--
T ss_pred             eccccccCCcceEeecCccccccCcCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCcccccC--
Confidence            9999999999999999864321    2467999999999999999999999999999999999999999999876544  


Q ss_pred             ccccCCCCCCCCCCCCCCCccCcccccCCCccccCCchhHHHhhhcCCCCcccceecccccccccCC-CcCccCCCCCee
Q 042478          563 IFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKN-NHLALDLNLPSI  641 (954)
Q Consensus       563 i~~~~~~~~~~~~~~~GaG~vn~~~Al~pglvyd~~~~dy~~flc~~g~~~~~i~~~~~~~~~c~~~-~~~~~~lN~psi  641 (954)
                              .++.+|+||+|+|||.+|++||||||++.+||+.|||++||+..+++.+++....|+.. .....|||||||
T Consensus       456 --------~~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~pS~  527 (621)
T 3vta_A          456 --------NPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSF  527 (621)
T ss_dssp             --------CTTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC-----------------------------CGGGSCCSSE
T ss_pred             --------CCCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCCCcCcccccccccE
Confidence                    35668999999999999999999999999999999999999999999999998889653 345789999999


Q ss_pred             ecccCC-CCceEEEEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCCccCCCCCCCceEEE
Q 042478          642 TIPNLH-NNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGS  720 (954)
Q Consensus       642 ~~~~~~-~~~~~tv~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~~~~~G~  720 (954)
                      ++.... ...+++|+|||||||+...+|++++++|+|++|+|+|.+|+|.+.+|+++|+|||+..      ..+.|+||+
T Consensus       528 ~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~------~~~~~~~g~  601 (621)
T 3vta_A          528 GLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS------IKGFVVSAS  601 (621)
T ss_dssp             EEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEEC------CCSSEEEEE
T ss_pred             EEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEec------CCCceEEEE
Confidence            985431 1578999999999999999999999999999999999999999899999999999864      456799999


Q ss_pred             EEEECCcceEEcCccccc
Q 042478          721 LTWTDDSVDSRFNGFLSI  738 (954)
Q Consensus       721 l~w~~~~~~vr~P~~v~~  738 (954)
                      |+|+|++|+||+||+|+.
T Consensus       602 l~w~d~~h~Vr~Pi~v~~  619 (621)
T 3vta_A          602 LVWSDGVHYVRSPITITS  619 (621)
T ss_dssp             EEEECSSCCCEEEEEEEC
T ss_pred             EEEEcCCEEEEeCEEEEE
Confidence            999999999999999864

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*

Probab=100.00  E-value=3.2e-80  Score=776.13  Aligned_cols=527  Identities=22%  Similarity=0.294  Sum_probs=418.7

Q ss_pred             ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCC----------CCCCCCccccceeccc
Q 042478          129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKF----------NSSNCNRKLIGARWFI  198 (954)
Q Consensus       129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f----------~~~~cn~kiiga~~~~  198 (954)
                      +..+|..+.+|+||+|||||||||++||+|.+        +..|++.|.....|          .+.+||+|++++++|.
T Consensus         6 ~~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~--------~~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~   77 (926)
T 1xf1_A            6 VKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRL--------TDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYS   77 (926)
T ss_dssp             CHHHHHHHCSCTTCEEEEEESCCTTCCCCCSC--------CSCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESC
T ss_pred             cHHHHhccCCCCCcEEEEEecCCCCCCHhHcC--------CCCCcccccchhhhcccccccCcccccccCcccceeeccc
Confidence            56799999999999999999999999999973        34566666543222          3458999999999998


Q ss_pred             cCCCCCC--Cchhhhccccccc----------cceeccCCCcEEEEEEecCCC--CChHHHHHHHHHHhcCCccEEEecc
Q 042478          199 KGIMDMI--NASTNTDEGLAAG----------LARGGAPLAHLAIYKACWDIG--CTDADVLKAFDKAIHDGVDVLSVSI  264 (954)
Q Consensus       199 ~~~~~~~--G~GTa~v~G~a~G----------~~~GvAP~A~L~~yKv~~~~g--~~~~dil~Aid~Ai~dgvdVINlSl  264 (954)
                      ++....|  |||| |++|+++|          .+.||||+|+|++||+|+..+  |..+++++||+||+++|+|||||||
T Consensus        78 ~~~~~~D~~gHGT-hVAgiiAg~~~~~~~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~~i~~Ai~~Ai~~gvdVIn~Sl  156 (926)
T 1xf1_A           78 KDGKTAVDQEHGT-HVSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSF  156 (926)
T ss_dssp             CCSCCCCSSTTTT-HHHHSSCCCCCCCCSCSCCTTTTCTTSEEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             cCCCCCCCCCcHH-HHHHHHhCCCccCcccCCceEEECCCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHhCCcEEEECC
Confidence            7654333  8999 99998876          358999999999999998776  5678899999999999999999999


Q ss_pred             cCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCC-------------CCcccc--CCCceEEEcccccCCCccc
Q 042478          265 GNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPV-------------AQTIVN--TAPWIITVGATTIDRAFPT  329 (954)
Q Consensus       265 G~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~-------------~~t~~~--~ap~vitVgAs~~d~~~~~  329 (954)
                      |+.........  ++++.++++|+++||+||+||||+|+.             ..++.+  .+||+|+|||++.++.+..
T Consensus       157 G~~~~~~~~~~--~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vitVgA~~~~~~~~~  234 (926)
T 1xf1_A          157 GNAALAYANLP--DETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTE  234 (926)
T ss_dssp             SSCCCTTCCCC--HHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSEEEEEEBCSEEEEE
T ss_pred             CCCCCCccccc--cHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceEEEecccccccccc
Confidence            98642110334  788999999999999999999999963             233444  4899999999999999888


Q ss_pred             eeec-CCCeEEeeeeeeccC--cCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHH
Q 042478          330 AITL-GNHQVLWGQSIDIGK--VSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVT  406 (954)
Q Consensus       330 ~~~l-g~~~~~~g~s~~~~~--~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~  406 (954)
                      .+.+ +++....+.++....  .....||+++...         .|.+..+  .+++||||+|+|  |.|.+.+|..+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~---------g~~~~~~--~~v~Gkivl~~r--g~~~~~~k~~~~~  301 (926)
T 1xf1_A          235 TVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR---------GTKEDDF--KDVKGKIALIER--GDIDFKDKIAKAK  301 (926)
T ss_dssp             EEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT---------SCSTTTT--TTCTTSEEEEEC--CSSCHHHHHHHHH
T ss_pred             ceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC---------CCCccch--hhcCCeEEEEEC--CCCCHHHHHHHHH
Confidence            8877 565555555544322  2356889987632         4776666  689999999999  8999999999999


Q ss_pred             HcCceEEEEEecCCCC----CCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCC
Q 042478          407 QAGGVGLIYAQFHTDG----LDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSM  482 (954)
Q Consensus       407 ~aGa~gvi~~n~~~~~----~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~  482 (954)
                      ++||.|+|++|+....    ......+|+.+++.++++.|.+    ....+.++............+.++.||||||+. 
T Consensus       302 ~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~~~~ti~~~~~~~~~~~~~~~~~a~FSSrGp~~-  376 (926)
T 1xf1_A          302 KAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----NPQKTITFNATPKVLPTASGTKLSRFSSWGLTA-  376 (926)
T ss_dssp             HTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----CSSCEEEECSSCEEEECSSCSBCCTTSCCCBCT-
T ss_pred             hCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh----CCceEEEecccceecccCCcceeccccCCCCCC-
Confidence            9999999999987543    3456789999999999998874    333333333333334556688999999999996 


Q ss_pred             CCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHHHH----hhCCCCCHHH----HHHHHHhccc
Q 042478          483 SPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIK----SLHRDWSPAA----IRSALVTTAS  554 (954)
Q Consensus       483 ~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~----q~~P~~sp~~----Iks~L~~TA~  554 (954)
                       ++++||||+|||++|+++|++      +.|..+||||||||||||++|||+    +.||+|+|+|    ||++||+||+
T Consensus       377 -~~~lKPDI~APG~~I~sa~~~------~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp~~~~~~Iks~L~~TA~  449 (926)
T 1xf1_A          377 -DGNIKPDIAAPGQDILSSVAN------NKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSAT  449 (926)
T ss_dssp             -TSCBSCCEEEECCCEEESSSC------SSSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHHHHHHHHHHHHHHHHSB
T ss_pred             -CCccCceEECCCCCEEeeccC------CcceecCccchhHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcCC
Confidence             899999999999999999987      689999999999999999999995    5699999997    9999999999


Q ss_pred             cCCCCCccccccCCCCCCCCCCCCCCCccCcccccCCCccccCCchhHHHhhhcCCCCcccceecccccccccCCCcCcc
Q 042478          555 QTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLAL  634 (954)
Q Consensus       555 ~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~pglvyd~~~~dy~~flc~~g~~~~~i~~~~~~~~~c~~~~~~~~  634 (954)
                      +++..+        ....+++++||+|+||+.+|++|.+           |||..+++..                    
T Consensus       450 ~~~~~~--------~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~--------------------  490 (926)
T 1xf1_A          450 ALYDED--------EKAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSS--------------------  490 (926)
T ss_dssp             CCEEGG--------GTEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCS--------------------
T ss_pred             CcccCC--------CCccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcc--------------------
Confidence            765332        1235678999999999999999854           6787764332                    


Q ss_pred             CCCCCeeecccCCCCceEEEEEEEEecCCC--CceeEEEEEc--CCCceEEEEcCEEEEecC-------CeEEEEEEEEE
Q 042478          635 DLNLPSITIPNLHNNETVTVTRKVTNVGQI--NSAYEALVEA--PYGVNMTVEPEVISFNMT-------IKILSFRVTFF  703 (954)
Q Consensus       635 ~lN~psi~~~~~~~~~~~tv~rtvtNvg~~--~~tY~~~v~~--p~g~~v~v~P~~l~f~~~-------g~~~~~~Vt~~  703 (954)
                           +|.+.++  ..+++++|||||+|+.  ..+|++++..  |+|..++|+|..|.|..+       ||+++|+|||+
T Consensus       491 -----~i~l~~~--~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~ag~~~~~~vt~~  563 (926)
T 1xf1_A          491 -----KVHLNNV--SDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPID  563 (926)
T ss_dssp             -----CEEEEEE--CSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECTTEEEEEEEEEE
T ss_pred             -----eeecccc--CccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECCCCEEEEEEEEE
Confidence                 3444555  4578899999999985  4678888765  778999999998877644       99999999999


Q ss_pred             eCC---ccC-CCCCCCceEEEEEEE--CCcce-EEcCcccc
Q 042478          704 SNH---KVH-PVPDAEYRFGSLTWT--DDSVD-SRFNGFLS  737 (954)
Q Consensus       704 ~~~---~~~-~~~~~~~~~G~l~w~--~~~~~-vr~P~~v~  737 (954)
                      +..   ... ..+.+.|+||+|+|+  ++.|. ||+||++.
T Consensus       564 ~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~  604 (926)
T 1xf1_A          564 ASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGF  604 (926)
T ss_dssp             CHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEE
T ss_pred             cCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEE
Confidence            752   000 013456899999999  56665 99999984

>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=5e-59  Score=467.77  Aligned_cols=198  Identities=77%  Similarity=1.152  Sum_probs=141.0

Q ss_pred             ceeeeccccccccccCCCcccccccCcccc-cCCCCCCCCccceeeecCCCCCCccccccceeEEEEEEEecCcCCCCCC
Q 042478          748 QQLSCSLFPSAVNLSSNSNVSLPFYDNKVK-PSPLLSSTPRFLTVIAMAPPKPGGKAKAKKVLGLIKLALEAGKATPAPP  826 (954)
Q Consensus       748 ~~~s~~~~~~~~~ls~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~g~a~~~p~  826 (954)
                      +++|+++   +.+||++.+++++|+..++. ++|  ++.+|++++++|. ||+.   ++|+++++|||+|+||+|+|+||
T Consensus        24 ~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~p--~~~~~~~~~~~M~-pk~~---~akkv~~~IkL~v~aGkA~PaPP   94 (224)
T 3bbo_K           24 SSLLTPS---SLSLSSNPRNSLQFLNSKLFLSPP--STSHRRLSIVAMA-PKPG---KAKKVIGVIKLALEAGKATPAPP   94 (224)
T ss_dssp             ------------------------------------------------C-CSCC---CCCCCSSEEEECCBTTBCCCSTT
T ss_pred             hhhhhhh---hhccccCCCcceeecccccccCCC--CCCCcccceeccC-CCCC---CccceEEEEEEEEecCcccCCCC
Confidence            4667766   78899999999999998743 444  7779999999985 5763   45789999999999999999999


Q ss_pred             CCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHHHHhCCCCCCCCCCCceeEeecHH
Q 042478          827 VGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIE  906 (954)
Q Consensus       827 ~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k~~~~~~~~~~~~~~~~g~it~~  906 (954)
                      |||+|||+|||||+||||||++|++|+|++|||+||||+||+|+|++++||+|+||+||||+++|+++|+++++|+||++
T Consensus        95 lGPaLG~~GVNim~FcK~fN~~T~d~~Gl~IPV~ITV~~DRsf~f~vktPpaS~LLkKAagi~kGs~kp~~~~vG~IT~~  174 (224)
T 3bbo_K           95 VGPALGSKGVNIMAFCKDYNARTADKPGFVIPVEITVFDDKSFTFILKTPPASVLLLKASGAEKGSKDPQMEKVGKITID  174 (224)
T ss_dssp             TTTTTTTTSSCTTSSHHHHHHHGGGSCSSBCCEEEEECSSSCEEEEECCCCTTHHHHHHHTCSSCCSSTTTSCCEEECHH
T ss_pred             ccccccccCCCHHHHHHHHHHHhcccCCCeEEEEEEEccCCeEEEEecCCCHHHHHHHHhCCCCCCCCCCCceeeeecHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCCCchhhhccC
Q 042478          907 QLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKKEL  954 (954)
Q Consensus       907 ~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~~~~~~~~~  954 (954)
                      ||+|||++|++|+++++|+++||+|+||||||||+||++.|++|+|++
T Consensus       175 qV~eIAk~K~~dl~a~~Le~avK~IlGTArSMGi~V~g~~p~~~~~~~  222 (224)
T 3bbo_K          175 QLRGIATEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPILVKKKKEV  222 (224)
T ss_dssp             HHHHHHHHTCTTSCCSSHHHHHHHHHHHHTTTTEEEC-----------
T ss_pred             HHHHHHHHHHhhhcCcCHHHHHHHHHHHHHhCeeEEeCCCCChhhccc
Confidence            999999999999999999999999999999999999999999999974

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}

Probab=100.00  E-value=1.9e-55  Score=521.78  Aligned_cols=352  Identities=31%  Similarity=0.407  Sum_probs=276.2

Q ss_pred             CCCceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEccceeEEEEEcCHHHHHHH-----------HcC
Q 042478           30 ATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKI-----------AEL   98 (954)
Q Consensus        30 ~~~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~~~~nGfs~~l~~~~~~~L-----------~~~   98 (954)
                      .+...|||.|++..      ..+...++++.       .+.++.|+|+ .|+||+++++++++++|           +++
T Consensus        33 ~~~~~~iV~~~~~~------~~~~~~~~~~~-------~g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~   98 (539)
T 3afg_A           33 DQEVSTIIMFDNQA------DKEKAVEILDF-------LGAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQL   98 (539)
T ss_dssp             TCEEEEEEEESSHH------HHHHHHHHHHH-------HTCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCC
T ss_pred             cCceEEEEEECCCC------CHHHHHHHHHh-------cCCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccC
Confidence            34557999998742      11222233332       2357999997 79999999999999999           899


Q ss_pred             CCeeEEEeCceeecccccccccccccc---ccCccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccc
Q 042478           99 PGVVQVIPNGILKLHTTRSWEFMGLHY---YQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGI  175 (954)
Q Consensus        99 p~V~~V~~~~~~~l~t~~s~~~~gl~~---~~~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~  175 (954)
                      |+|++|++++.+++....    .+++.   ..++..+|..+.+|+||+|||||||||++||+|.++              
T Consensus        99 ~~V~~v~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~~--------------  160 (539)
T 3afg_A           99 SGVQFIQEDYVVKVAVET----EGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQGK--------------  160 (539)
T ss_dssp             TTEEEEEECCEEECC---------------CCBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTTT--------------
T ss_pred             CCeeEEEecccccccCcc----ccCCccccccCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhCC--------------
Confidence            999999999998875321    11110   003567899999999999999999999999999643              


Q ss_pred             cccCCCCCCCCCCccccceeccccCC---CCCCCchhhhcccccccc-------ceeccCCCcEEEEEEecCCC-CChHH
Q 042478          176 CQKGEKFNSSNCNRKLIGARWFIKGI---MDMINASTNTDEGLAAGL-------ARGGAPLAHLAIYKACWDIG-CTDAD  244 (954)
Q Consensus       176 ~~~~~~f~~~~cn~kiiga~~~~~~~---~~~~G~GTa~v~G~a~G~-------~~GvAP~A~L~~yKv~~~~g-~~~~d  244 (954)
                                     +++.++|..+.   .+.+|||| |++|+++|.       +.||||+|+|++||++++.| ++.++
T Consensus       161 ---------------i~~~~d~~~~~~~~~D~~gHGT-hVAgiiag~~~~~~g~~~GvAp~A~l~~~kv~~~~g~~~~~~  224 (539)
T 3afg_A          161 ---------------VIGWVDFVNGKTTPYDDNGHGT-HVASIAAGTGAASNGKYKGMAPGAKLVGIKVLNGQGSGSISD  224 (539)
T ss_dssp             ---------------EEEEEETTTCCSSCCBSSSHHH-HHHHHHHCCCGGGTTTTCCSCTTCEEEEEECSCTTSEEEHHH
T ss_pred             ---------------EeeeEECCCCCCCCCCCCCCHH-HHHHHHhCcCccCCCCEEEECCCCEEEEEEeecCCCCcCHHH
Confidence                           12222222221   11238999 999987653       68999999999999998876 78899


Q ss_pred             HHHHHHHHhcC----CccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCc--cccCCCceEEE
Q 042478          245 VLKAFDKAIHD----GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQT--IVNTAPWIITV  318 (954)
Q Consensus       245 il~Aid~Ai~d----gvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t--~~~~ap~vitV  318 (954)
                      +++||+||+++    |++|||||||.... . ...  +++..++++|.++|++||+||||+|+...+  .++..+++|+|
T Consensus       225 i~~ai~~a~~~~~~~g~~Vin~SlG~~~~-~-~~~--~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitV  300 (539)
T 3afg_A          225 IINGVDWAVQNKDKYGIKVINLSLGSSQS-S-DGT--DSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITV  300 (539)
T ss_dssp             HHHHHHHHHHTHHHHTEEEEEECCCCCSC-C-CSC--SHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEE
T ss_pred             HHHHHHHHHhhhhhcCCcEEEeCCCCCCC-C-ccc--hHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEE
Confidence            99999999986    99999999998752 2 334  789999999999999999999999986544  45678999999


Q ss_pred             cccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchH
Q 042478          319 GATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDI  398 (954)
Q Consensus       319 gAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~  398 (954)
                      ||++.                                                                           
T Consensus       301 gA~~~---------------------------------------------------------------------------  305 (539)
T 3afg_A          301 GAVDK---------------------------------------------------------------------------  305 (539)
T ss_dssp             EEECT---------------------------------------------------------------------------
T ss_pred             eeecC---------------------------------------------------------------------------
Confidence            98431                                                                           


Q ss_pred             HHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCC
Q 042478          399 QSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRG  478 (954)
Q Consensus       399 ~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~G  478 (954)
                                                                                           .+.+++|||||
T Consensus       306 ---------------------------------------------------------------------~~~~a~fSs~G  316 (539)
T 3afg_A          306 ---------------------------------------------------------------------YDVITDFSSRG  316 (539)
T ss_dssp             ---------------------------------------------------------------------TSCBCSSSCCC
T ss_pred             ---------------------------------------------------------------------CcccccccCCC
Confidence                                                                                 13468999999


Q ss_pred             CCCCCCCCcCCeEEecCCceEecCCCCCCC---CCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 042478          479 PNSMSPAVLKPDIVAPGVDILSAYPPIGSK---DIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQ  555 (954)
Q Consensus       479 P~~~~~~~lKPDI~APG~~I~sa~~~~~~~---~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~  555 (954)
                      |+.  ++++||||+|||++|+++++.....   ....|..++|||||||||||++|||+|+||+|+|++||++|++||++
T Consensus       317 p~~--~~~~kpdi~APG~~I~s~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~  394 (539)
T 3afg_A          317 PTA--DNRLKPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADI  394 (539)
T ss_dssp             CCT--TCBCCCSEEEECSSEEEECCTTCCCSEECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSBC
T ss_pred             CCC--CCCCcccEecCcCCEEeeccCCCCCCCCCcccccccCchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcc
Confidence            997  7899999999999999999653211   12369999999999999999999999999999999999999999997


Q ss_pred             CCCCCccccccCCCCCCCCCCCCCCCccCcccccCC
Q 042478          556 TGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNP  591 (954)
Q Consensus       556 ~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~p  591 (954)
                      ++..+            .+++.||+|+||+.+|++.
T Consensus       395 ~~~~~------------~~~~~~G~G~vn~~~Al~~  418 (539)
T 3afg_A          395 VKPDE------------IADIAYGAGRVNAYKAAYY  418 (539)
T ss_dssp             SSGGG------------CSBTTTBTCBCCHHHHHTG
T ss_pred             CCCCC------------CCccCccCCccCHHHHhhh
Confidence            64221            2467899999999999984

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A

Probab=100.00  E-value=2.9e-53  Score=486.96  Aligned_cols=339  Identities=27%  Similarity=0.361  Sum_probs=268.7

Q ss_pred             CceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEccceeEEEEEcCHHHHHHHHcCCCeeEEEeCceee
Q 042478           32 SNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILK  111 (954)
Q Consensus        32 ~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~~~~nGfs~~l~~~~~~~L~~~p~V~~V~~~~~~~  111 (954)
                      +..|||.|++...         ..++++       ..+.+++++|. .|++|+++++++++++|+++|+|++|++++.++
T Consensus         2 ~~~~iV~~~~~~~---------~~~~~~-------~~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~   64 (395)
T 2z2z_A            2 TIRVIVSVDKAKF---------NPHEVL-------GIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV   64 (395)
T ss_dssp             EEEEEEEECTTTC---------CHHHHH-------HTTCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEE
T ss_pred             cEEEEEEECCCcc---------HHHHHH-------HcCCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeec
Confidence            4689999998521         112222       23467999998 599999999999999999999999999999998


Q ss_pred             cccccccc-----------ccccccccCccccccCCCCCCc--eEEEEEeCCCCCCCCCcCCCCCCCCCCCCCccccccc
Q 042478          112 LHTTRSWE-----------FMGLHYYQSSKNLSTESNMGEG--TIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQK  178 (954)
Q Consensus       112 l~t~~s~~-----------~~gl~~~~~~~~~w~~~~~G~G--VvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~  178 (954)
                      ++....+.           .+++... +...+|..+ +|+|  |+|||||||||++||+|.++...         +    
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~w~~~~i-~~~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~~~~---------~----  129 (395)
T 2z2z_A           65 LLGKPSWLGGGSTQPAQTIPWGIERV-KAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAANIAW---------C----  129 (395)
T ss_dssp             ECCEECC------CCSCCCCHHHHHT-TCGGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGGEEE---------E----
T ss_pred             ccCCCCcccccccCccccCCcchhhc-CHHHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhcccc---------C----
Confidence            75432211           1222211 356789988 9999  99999999999999999753211         0    


Q ss_pred             CCCCCCCCCCccccceeccccCCCCCCCchhhhcccccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHH
Q 042478          179 GEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKA  252 (954)
Q Consensus       179 ~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~A  252 (954)
                       .+|.    ++++ +...  .+..+.+|||| |++|+++|.     +.||||+|+|+.+|++++.| ++.+++++||+||
T Consensus       130 -~~~~----~~~~-~~~~--~~~~d~~gHGT-~vAgiia~~~n~~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a  200 (395)
T 2z2z_A          130 -VSTL----RGKV-STKL--RDCADQNGHGT-HVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQA  200 (395)
T ss_dssp             -EECG----GGCC-BCCH--HHHBCSSSHHH-HHHHHHHCCCSSSSCCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHH
T ss_pred             -cccc----CCcc-cCCC--CCCCCCCCCHH-HHHHHHHeecCCCceEEECCCCEEEEEEEecCCCCccHHHHHHHHHHH
Confidence             0110    0000 0000  00122338999 999987764     58999999999999998876 7889999999999


Q ss_pred             hcC--------------------CccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCccccCC
Q 042478          253 IHD--------------------GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTA  312 (954)
Q Consensus       253 i~d--------------------gvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~a  312 (954)
                      +++                    +++|||||||+..    . .  ..+..++.+|.++|++||+||||+|.....+++..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~----~-~--~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~  273 (395)
T 2z2z_A          201 ILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA----D-D--SYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAY  273 (395)
T ss_dssp             HHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSC----C-C--HHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTS
T ss_pred             HhCccccccccccccccccccCCCCeEEEecCCCCC----C-C--HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCC
Confidence            988                    9999999999874    1 2  56788889999999999999999998877888889


Q ss_pred             CceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecC
Q 042478          313 PWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSR  392 (954)
Q Consensus       313 p~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~  392 (954)
                      |++|+|||++.                                                                     
T Consensus       274 ~~vi~Vga~~~---------------------------------------------------------------------  284 (395)
T 2z2z_A          274 PEVIAVGAIDS---------------------------------------------------------------------  284 (395)
T ss_dssp             TTEEEEEEECT---------------------------------------------------------------------
T ss_pred             CCEEEEEEecC---------------------------------------------------------------------
Confidence            99999998531                                                                     


Q ss_pred             CCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCccc
Q 042478          393 PDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVA  472 (954)
Q Consensus       393 ~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a  472 (954)
                                                                                                 .+.++
T Consensus       285 ---------------------------------------------------------------------------~~~~a  289 (395)
T 2z2z_A          285 ---------------------------------------------------------------------------NDNIA  289 (395)
T ss_dssp             ---------------------------------------------------------------------------TSCBC
T ss_pred             ---------------------------------------------------------------------------CCCCC
Confidence                                                                                       13468


Q ss_pred             ccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhCC-------------C
Q 042478          473 SFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHR-------------D  539 (954)
Q Consensus       473 ~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P-------------~  539 (954)
                      .||+|||          +|+|||++|+++++.      +.|..++|||||||||||++|||+|++|             .
T Consensus       290 ~fS~~G~----------~v~APG~~i~s~~~~------~~y~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~~~~~  353 (395)
T 2z2z_A          290 SFSNRQP----------EVSAPGVDILSTYPD------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDD  353 (395)
T ss_dssp             TTSCSSC----------SEEEECSSEEEEETT------TEEEEEESHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTC
T ss_pred             cccCCCC----------CEEeCCCCeeeecCC------CceEecCCHHHHHHHHHHHHHHHHHhCccccccccccccccC
Confidence            9999997          679999999999987      7899999999999999999999999999             9


Q ss_pred             CCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccCC
Q 042478          540 WSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNP  591 (954)
Q Consensus       540 ~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~p  591 (954)
                      |++.+||++|++||++++..+             .++.||+|+||+.+|++.
T Consensus       354 ls~~~v~~~L~~tA~~~~~~g-------------~~~~~G~G~vd~~~A~~~  392 (395)
T 2z2z_A          354 ISKNTVRGILHITADDLGPTG-------------WDADYGYGVVRAALAVQA  392 (395)
T ss_dssp             CSSSSHHHHHHHHSBCCSSSS-------------SBTTTBTCBCCHHHHHHH
T ss_pred             CCHHHHHHHHHhhccccCCCC-------------CCCCccCceeCHHHHHHH
Confidence            999999999999999764322             356899999999999873

>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA, ribosome, translocation, thiostrep; 2.57A {Thermotoga maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A* 1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K 2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A 487d_L 1pn8_L 1pn7_L

Probab=100.00  E-value=1.3e-52  Score=400.14  Aligned_cols=139  Identities=66%  Similarity=1.037  Sum_probs=132.5

Q ss_pred             cceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHHHH
Q 042478          806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKA  885 (954)
Q Consensus       806 ~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k~  885 (954)
                      |++.++|||+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+||||+||+|+|++++||+|+||+||
T Consensus         2 k~~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~fck~fN~~T~~~~G~~ipV~itv~~drsf~f~vk~Ppas~Ll~ka   81 (140)
T 1mms_A            2 KKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKKA   81 (140)
T ss_dssp             -----CEEEEEETTCCCCTTTTTHHHHTTTCCHHHHHHHHHHHTTTSCSSEEEEEEEECTTSCEEEEECCCCHHHHHHHH
T ss_pred             CceEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHhhhcCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcC
Q 042478          886 AGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDP  944 (954)
Q Consensus       886 ~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~  944 (954)
                      +|+++||++|+++++|+||++||+|||++|++|+++++|+++||+|+||||||||+|++
T Consensus        82 ~g~~~gs~~p~k~~vG~it~~qi~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g  140 (140)
T 1mms_A           82 AGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD  140 (140)
T ss_dssp             HTCSSCCSSTTTSCCEEECHHHHHHHHHHHGGGCCCSSHHHHHHHHHHHHTTTTEEEC-
T ss_pred             hCCCCCCCCCCCeEeeeEcHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHcCeeEeeC
Confidence            99999999999999999999999999999999999999999999999999999999985

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A

Probab=100.00  E-value=2e-51  Score=482.96  Aligned_cols=359  Identities=22%  Similarity=0.265  Sum_probs=269.7

Q ss_pred             CCCceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEccceeEEEEEcCHHHHHHHHc-CCCeeEEEeCc
Q 042478           30 ATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAE-LPGVVQVIPNG  108 (954)
Q Consensus        30 ~~~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~~~~nGfs~~l~~~~~~~L~~-~p~V~~V~~~~  108 (954)
                      .+.+.|||.+++.         ..-.++++       +.+.+++++|. .|++|+++++++++++|++ +|+|++|++++
T Consensus        42 ~~~~~yiv~~~~~---------~~~~~~~~-------~~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~  104 (471)
T 3t41_A           42 SEELYYSVEYKNT---------ATFNKLVK-------KKSLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATC  104 (471)
T ss_dssp             -CCEEEEEEESCH---------HHHHHHHH-------HHTCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECC
T ss_pred             CCceEEEEEcCCH---------HHHHHHHH-------hCCCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecc
Confidence            3456899977652         11222222       23457889996 6999999999999999999 99999999999


Q ss_pred             eeeccccc-------------cccccccccccCccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccc
Q 042478          109 ILKLHTTR-------------SWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGI  175 (954)
Q Consensus       109 ~~~l~t~~-------------s~~~~gl~~~~~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~  175 (954)
                      .++++.+.             .|.+..+..   ...+|..+.+|+||+|||||||||++||+|.+....      .++. 
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~---~~~~~~~~~~G~gv~VaViDtGid~~Hp~~~~~~~~------~~~~-  174 (471)
T 3t41_A          105 STCITSEKTIDRTSNESLFSRQWDMNKITN---NGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNFST------DSKN-  174 (471)
T ss_dssp             SSCBCCCCCCCC---CCSCCCCHHHHTTTT---TTGGGGGCCSSCCCCEEEEESCCCTTCTTTTTTBCT------TCEE-
T ss_pred             eeccccccccccCCCCccccccccHhhccC---cHHHHhccCCCCCcEEEEEeCCCCCCChhHhcCccc------CCcc-
Confidence            88875432             243333321   346899999999999999999999999999864322      0000 


Q ss_pred             cccCCCCCCCCCCccccceeccccCCCCCCCchhhhcccccc--ccceeccCCCcEEEEEEecCCCCChHHHHHHHHHHh
Q 042478          176 CQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAA--GLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAI  253 (954)
Q Consensus       176 ~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~--G~~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai  253 (954)
                      ...+..|......  ..+.   .....+.+|||| |++|+++  |...||||+|+|+.||++++.++..+++++||+||+
T Consensus       175 ~~~~~~~~~~~~~--~~~~---~~~~~d~~gHGT-~vAgiiaa~g~~~GvAp~a~l~~~kv~~~~~~~~~~i~~ai~~a~  248 (471)
T 3t41_A          175 LVPLNGFRGTEPE--ETGD---VHDVNDRKGHGT-MVSGQTSANGKLIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAA  248 (471)
T ss_dssp             CCCTTCGGGCCTT--CCCC---TTCCCCSSSHHH-HHHHHHHCBSSSBCSSTTSCEEEEECCSSSCCCHHHHHHHHHHHH
T ss_pred             cccCCCccCCCcc--cCCC---CCCCcCCCCccc-hhhheeecCCceeEECCCCeEEEEEeccCCCCcHHHHHHHHHHHH
Confidence            0000011100000  0000   001112238999 9999877  668999999999999999886789999999999999


Q ss_pred             cCCccEEEecccCCCCCC-----Ccc----CcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCc-----------------
Q 042478          254 HDGVDVLSVSIGNEIPLF-----SYI----DQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQT-----------------  307 (954)
Q Consensus       254 ~dgvdVINlSlG~~~~~~-----~~~----~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t-----------------  307 (954)
                      ++|++|||||||.....+     ...    ...+.+..++..|.++|++||+||||+|.+...                 
T Consensus       249 ~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~  328 (471)
T 3t41_A          249 NDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVK  328 (471)
T ss_dssp             HTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEE
T ss_pred             hCCCCEEEeCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCcee
Confidence            999999999999842100     010    112567888899999999999999999976432                 


Q ss_pred             -cccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceE
Q 042478          308 -IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKI  386 (954)
Q Consensus       308 -~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gki  386 (954)
                       .++..|++|+|||++.                                                               
T Consensus       329 ~~Pa~~~~vitVgA~~~---------------------------------------------------------------  345 (471)
T 3t41_A          329 DVPASMDNVVTVGSTDQ---------------------------------------------------------------  345 (471)
T ss_dssp             EETTTSTTEEEEEEECT---------------------------------------------------------------
T ss_pred             eccccCCCeEEEEeeCC---------------------------------------------------------------
Confidence             5567788999987532                                                               


Q ss_pred             EEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeeccc
Q 042478          387 ILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDL  466 (954)
Q Consensus       387 vl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~  466 (954)
                                                                                                      
T Consensus       346 --------------------------------------------------------------------------------  345 (471)
T 3t41_A          346 --------------------------------------------------------------------------------  345 (471)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcccccCCCCCCCCCCCCcCCeEEecCCc----------------------eEecCCCCCCCCCCceEeecCCCchhH
Q 042478          467 VSPRVASFSSRGPNSMSPAVLKPDIVAPGVD----------------------ILSAYPPIGSKDIQGYALLSGTSMSCP  524 (954)
Q Consensus       467 ~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~----------------------I~sa~~~~~~~~~~~y~~~SGTSMAaP  524 (954)
                       .+.++.||+|||+.       |||+|||++                      |+++++.      +.|..++|||||||
T Consensus       346 -~~~~a~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~------~~~~~~sGTS~AaP  411 (471)
T 3t41_A          346 -KSNLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANN------GRYIYQAGTALATP  411 (471)
T ss_dssp             -TSSBCTTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECTT------SSEEEECSHHHHHH
T ss_pred             -CCCCCCccCCCCCC-------CeEEecCCCcccccccccccccccccccCceeEecCCC------CCEEeecchHHHHH
Confidence             23478999999974       599999987                      8999886      78999999999999


Q ss_pred             HHHHHHHHHHhhCC-CCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccCCC
Q 042478          525 HVAGIAALIKSLHR-DWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPG  592 (954)
Q Consensus       525 ~VAG~aALl~q~~P-~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~pg  592 (954)
                      ||||++|||+|++| .|+|++||++|++||.+...              .++..||+|+||+.+|++..
T Consensus       412 ~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~--------------~~~~~~G~G~vd~~~Al~~a  466 (471)
T 3t41_A          412 KVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN--------------KPFSRYGHGELDVYKALNVA  466 (471)
T ss_dssp             HHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC--------------CCHHHHTTCBBCHHHHTTTT
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC--------------CCcCccccChhCHHHHHHHH
Confidence            99999999999999 89999999999999996421              45568999999999999843

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*

Probab=100.00  E-value=8e-51  Score=473.22  Aligned_cols=370  Identities=22%  Similarity=0.292  Sum_probs=270.7

Q ss_pred             ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478          129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS  208 (954)
Q Consensus       129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G  208 (954)
                      +..+|..+  |+||+|||||||||++||+|.+..+         .+.+..+.            + .++  +..+.+|||
T Consensus        13 ~~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~~~---------~~~~~~~~------------~-~~~--~~~d~~gHG   66 (441)
T 1y9z_A           13 ATVLSDSQ--AGNRTICIIDSGYDRSHNDLNANNV---------TGTNNSGT------------G-NWY--QPGNNNAHG   66 (441)
T ss_dssp             CSSSCCTT--GGGCEEEEEESCCCTTSTTTTTSEE---------EECCCTTS------------C-CTT--CCCSSCCHH
T ss_pred             hhhhhhcC--CCCcEEEEEcCCCCCCChhHhcCcc---------cCcccCCC------------C-CCC--CCCCCCCcH
Confidence            56789865  7799999999999999999975421         11111000            0 000  011123899


Q ss_pred             hhhcccccccc-----ceeccCCC--cEEEEEEecCCC-CChHHHHHHHHHHhcC-CccEEEecccCCCCCCCccCcccH
Q 042478          209 TNTDEGLAAGL-----ARGGAPLA--HLAIYKACWDIG-CTDADVLKAFDKAIHD-GVDVLSVSIGNEIPLFSYIDQRDS  279 (954)
Q Consensus       209 Ta~v~G~a~G~-----~~GvAP~A--~L~~yKv~~~~g-~~~~dil~Aid~Ai~d-gvdVINlSlG~~~~~~~~~~~~d~  279 (954)
                      | |++|++++.     +.||||+|  +|+.||+++..| ++.+++++||+||+++ |+||||||||...  .   .  ..
T Consensus        67 T-~vAgiia~~~~~~g~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~g~~Vin~S~G~~~--~---~--~~  138 (441)
T 1y9z_A           67 T-HVAGTIAAIANNEGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSG--S---T--TT  138 (441)
T ss_dssp             H-HHHHHHHCCCSSSBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCCBSC--C---B--HH
T ss_pred             H-HHHHHHhcccCCCCceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHhcCCcEEEeCCCCCC--C---C--HH
Confidence            9 999987763     68999995  999999998877 8889999999999999 9999999999874  1   1  46


Q ss_pred             HHHHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecC-------------------CCe---
Q 042478          280 IAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLG-------------------NHQ---  337 (954)
Q Consensus       280 ~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg-------------------~~~---  337 (954)
                      +..++.+|.++|++||+||||+|.....+++..||+|+|||++.+.........+                   ++.   
T Consensus       139 ~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~ApG~~i~s~~~~g~g~~~~  218 (441)
T 1y9z_A          139 ERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLAD  218 (441)
T ss_dssp             HHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEECSSEEEECSTTCEEEEE
T ss_pred             HHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEeccCCeeccccCCCcccce
Confidence            7788889999999999999999988778888899999999998775433322222                   221   


Q ss_pred             -EEeeeeeeccCc-C-Cceee--eeecccc--ccCCCCCCccCCC--CCCcccccceEEEEecCCCCc-----hHHHHHH
Q 042478          338 -VLWGQSIDIGKV-S-HGFTG--LTYSERI--AFDPDSANDCRQG--SLNATLAAGKIILCFSRPDTQ-----DIQSAAI  403 (954)
Q Consensus       338 -~~~g~s~~~~~~-~-~~~~~--l~~~~~~--~~~~~~~~~C~~~--~~~~~~v~Gkivl~~~~~g~~-----~~~~k~~  403 (954)
                       .+.|.+++.... + ...++  +.+....  .........|...  .++..+++|||++|+|  |.|     .+.+|..
T Consensus       219 ~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~~~~~~~~~~gkivl~~r--g~~~~~~~~~~~~~~  296 (441)
T 1y9z_A          219 ITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVER--VGNQGSSYPEINSTK  296 (441)
T ss_dssp             EEETTEECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEEC--CSCSSSSCTHHHHHH
T ss_pred             eecccccccccccCcccccccCCccccccccccccccchhccccccccccCCCccccEEEEec--cccCcccccHHHHHH
Confidence             223333321110 0 00000  0111000  0001123457753  5678899999999999  544     7889999


Q ss_pred             HHHHcCceEEEEEecCCCC---------CCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCccccc
Q 042478          404 SVTQAGGVGLIYAQFHTDG---------LDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASF  474 (954)
Q Consensus       404 ~~~~aGa~gvi~~n~~~~~---------~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~F  474 (954)
                      +++++|+.|+|++|+....         ....+.+|.+.++.++|+.|++|+.+..                        
T Consensus       297 ~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~------------------------  352 (441)
T 1y9z_A          297 ACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQST------------------------  352 (441)
T ss_dssp             HHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSEE------------------------
T ss_pred             HHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCCc------------------------
Confidence            9999999999999886432         2345679999999999999998763210                        


Q ss_pred             CCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478          475 SSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTAS  554 (954)
Q Consensus       475 SS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~  554 (954)
                                     .+        ++..      ++.|..+||||||||||||++|||+|+||+|+|++||++||+||+
T Consensus       353 ---------------t~--------~~~~------~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~  403 (441)
T 1y9z_A          353 ---------------TV--------SNQG------NQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATAD  403 (441)
T ss_dssp             ---------------EE--------EEEE------EESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSB
T ss_pred             ---------------cc--------cccc------CCCceeecccccCCcccchHHHHHHHHCCCCCHHHHHHHHHhhch
Confidence                           11        1111      267999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccccccCCCCCCCCCCCCCCCccCcccccCCCccccCCchhHHHhhhcCCC
Q 042478          555 QTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGH  611 (954)
Q Consensus       555 ~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~pglvyd~~~~dy~~flc~~g~  611 (954)
                      +++..+             .+.+||+|+||+.+|+           ||+.|||+.++
T Consensus       404 ~~~~~g-------------~~~~~G~G~vn~~~A~-----------~~~~~lc~~~~  436 (441)
T 1y9z_A          404 DLSVAG-------------RDNQTGYGMINAVAAK-----------AYLDESCTGPT  436 (441)
T ss_dssp             CCSSSS-------------CBTTTBTCBCCHHHHH-----------HHHHHCTTCC-
T ss_pred             hhccCC-------------CcccccccccCHHHHH-----------HHHHhhhcCCC
Confidence            775443             2457999999999995           59999999874

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}

Probab=100.00  E-value=3.9e-53  Score=504.66  Aligned_cols=339  Identities=20%  Similarity=0.219  Sum_probs=57.7

Q ss_pred             ceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEccceeEEEEEcCHHHHHHHHcCCCeeEEEeCceeec
Q 042478           33 NVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKL  112 (954)
Q Consensus        33 ~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~~~~nGfs~~l~~~~~~~L~~~p~V~~V~~~~~~~l  112 (954)
                      +.|||+|++...   ....+.|.+++...... .....++++.|++.|+||+++++++++++|+++|+|++|++++.+..
T Consensus        76 g~YIV~lk~~~~---~~~~~~~~~~l~a~~~~-~g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~  151 (692)
T 2p4e_P           76 GTYVVVLKEETH---LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA  151 (692)
T ss_dssp             EEEEEEECTTCC---HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred             CcEEEEECCCCC---HHHHHHHHHHHHHHHhh-cccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEecccccc
Confidence            489999998632   22234455555443311 11245799999999999999999999999999999999999998865


Q ss_pred             cccccccccccccccCccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCcccc
Q 042478          113 HTTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLI  192 (954)
Q Consensus       113 ~t~~s~~~~gl~~~~~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kii  192 (954)
                      . ...|.+..+.........|..+.+|+||+|||||||||++||+|.++...     ..|...-+  .            
T Consensus       152 ~-~~pWgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~~-----~~~~~~~d--~------------  211 (692)
T 2p4e_P          152 Q-SIPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVMV-----TDFENVPE--E------------  211 (692)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             C-CCCcchhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCceEe-----cccccccC--C------------
Confidence            3 33465444332101224688888999999999999999999999865321     01110000  0            


Q ss_pred             ceeccccCCCCCCCchhhhccccccccceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcC------CccEEEeccc
Q 042478          193 GARWFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHD------GVDVLSVSIG  265 (954)
Q Consensus       193 ga~~~~~~~~~~~G~GTa~v~G~a~G~~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~d------gvdVINlSlG  265 (954)
                      .+..|.....+.+|||| |++|+++|...||||+|+|++|||+++.| ++.+++++||+||+++      |++|||||||
T Consensus       212 dg~~~~~~~~D~~GHGT-HVAGiIAg~~~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlG  290 (692)
T 2p4e_P          212 DGTRFHRQASKCDSHGT-HLAGVVSGRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLA  290 (692)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCcccCCCCCCCCcHH-HhhhHhhcCCCccCCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhhhhcccCCceEEEecCC
Confidence            00011111122338999 99999999889999999999999998776 7889999999999986      8999999999


Q ss_pred             CCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCc-cccCCCceEEEcccccCCCccceeecCCCeEEeeeee
Q 042478          266 NEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQT-IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSI  344 (954)
Q Consensus       266 ~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t-~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~  344 (954)
                      +..  .      ..+..++.+|.++||+||+||||+|.+... .++..|++|+|||++.+..                  
T Consensus       291 g~~--s------~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~------------------  344 (692)
T 2p4e_P          291 GGY--S------RVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQ------------------  344 (692)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCC--c------HHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCC------------------
Confidence            753  2      456778888999999999999999977543 3677899999998653210                  


Q ss_pred             eccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCC
Q 042478          345 DIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLD  424 (954)
Q Consensus       345 ~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~  424 (954)
                                                                                                      
T Consensus       345 --------------------------------------------------------------------------------  344 (692)
T 2p4e_P          345 --------------------------------------------------------------------------------  344 (692)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCC
Q 042478          425 SCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPP  504 (954)
Q Consensus       425 ~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~  504 (954)
                                                                ....-+.||+|||.        |||+|||++|+++++.
T Consensus       345 ------------------------------------------~a~~ss~fSn~G~~--------vDI~APG~~I~St~~~  374 (692)
T 2p4e_P          345 ------------------------------------------PVTLGTLGTNFGRC--------VDLFAPGEDIIGASSD  374 (692)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------------------------------------------ccccccccCCCCCc--------eeEEecCCcEEeeccC
Confidence                                                      00001238999984        5999999999999986


Q ss_pred             CCCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 042478          505 IGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQT  556 (954)
Q Consensus       505 ~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~  556 (954)
                      .    ++.|..++|||||||||||++|||+|++|+|+|++||++|++||.+.
T Consensus       375 ~----~~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~tA~~~  422 (692)
T 2p4e_P          375 C----STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKD  422 (692)
T ss_dssp             ----------------------------------------------------
T ss_pred             C----CCceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcccc
Confidence            2    25799999999999999999999999999999999999999999864

>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; post-translational modification, multiple methyltransferase; HET: SAH 4MM; 1.75A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 2e34_A 2e35_A 2e36_A 2h8w_A 2hgj_L 2hgq_L 2hgu_L 2j01_K 2j03_K 2jl6_K 2jl8_K 2klm_A 2nxn_B 2wh2_K 2wh4_K 2wrj_K 2wrl_K 2x9s_K 2x9u_K 2xtg_K ...

Probab=100.00  E-value=6.8e-52  Score=397.35  Aligned_cols=143  Identities=57%  Similarity=0.897  Sum_probs=75.9

Q ss_pred             cceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHHHH
Q 042478          806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKA  885 (954)
Q Consensus       806 ~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k~  885 (954)
                      |++.++|||+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+||||+||||+|++++||+|+||+||
T Consensus         1 k~~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~~G~~ipV~itv~~drsf~~~~~~Ppas~Ll~Ka   80 (146)
T 3egv_B            1 KKVVAVVKLQLPAGAATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTPPASYLIRKA   80 (146)
T ss_dssp             CCEEEEEEEEEETTCCCSSTTHHHHHHTTTCCHHHHHHHHHHHTTTSTTCEEEEEEEEETTSCEEEEECCCCHHHHC---
T ss_pred             CceEEEEEEEEecccccCCCCcchhhcccCCCHHHHHHHHHHHhcccCCCEeeEEEEEeCCCeEEEEEeCCCHHHHHHHh
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCCCch
Q 042478          886 AGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLE  948 (954)
Q Consensus       886 ~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~~~  948 (954)
                      ||+++|+++|+++++|+||++||+|||++|++|+++++|+++||+|+||||||||+||+..+.
T Consensus        81 ~g~~~gs~~p~~~~vG~it~~qi~eIA~~K~~d~~a~~l~~a~k~I~GTA~SmGi~V~g~~~~  143 (146)
T 3egv_B           81 AGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARSMGVEVVGAPEV  143 (146)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             hCCCCCCCCCCCeeeeeecHHHHHHHHHHHhhhhcccCHHHHHHHhHhhhhcCeEEEECCCcC
Confidence            999999999999999999999999999999999999999999999999999999999997664

>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_G

Probab=100.00  E-value=1.4e-50  Score=388.35  Aligned_cols=137  Identities=38%  Similarity=0.671  Sum_probs=133.8

Q ss_pred             eeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCC-CceeeEEEEEeCCCeEEEEEeCCCHHHHHHHHh
Q 042478          808 VLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKA-GYVIPVEITVYDDRSFTFILKTPPASVLLLKAA  886 (954)
Q Consensus       808 ~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~-g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k~~  886 (954)
                      ++++|||+|+||+|+|+|||||+|||+|||+|+||||||++|++|+ |++|||+||||+||+|+|++++||+|+||+|||
T Consensus         4 ~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~fck~fN~~T~~~~~G~~ipV~Itv~~drsf~f~vk~Ppas~Ll~kaa   83 (145)
T 2ftc_G            4 VGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAA   83 (145)
T ss_pred             eEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHHhhhcCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHHHh
Confidence            4789999999999999999999999999999999999999999987 999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCceeEeecHHHHHHHHHHhCCC--CCC--cCHHHHHHHHHHhhcccceEEcC
Q 042478          887 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPD--LNC--TSIESAMRIIAGTAANMGIDIDP  944 (954)
Q Consensus       887 ~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~--~~~--~~l~~~~k~i~gta~smG~~v~~  944 (954)
                      |+++||++|+++++|+||++||+|||++|++|  |++  ++|+++||+|+||||||||+|++
T Consensus        84 g~~~gs~~p~~~~vG~it~~qv~eIA~~K~~d~~l~a~~~~l~~a~k~I~GTArSmGi~V~~  145 (145)
T 2ftc_G           84 GIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVK  145 (145)
T ss_pred             CCCCCCCCCCCcCcceEcHHHHHHHHHHhCcchhccCccCCHHHHHHHHHHHHhcCeEEEeC
Confidence            99999999999999999999999999999997  999  99999999999999999999984

>1vq8_I 50S ribosomal protein L11P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.4.7.1 PDB: 1vq4_I* 1vq5_I* 1vq6_I* 1vq7_I* 1s72_I* 1vq9_I* 1vqk_I* 1vql_I* 1vqm_I* 1vqn_I* 1vqo_I* 1vqp_I* 1yhq_I* 1yi2_I* 1yij_I* 1yit_I* 1yj9_I* 1yjn_I* 1yjw_I* 2otl_I* ...

Probab=100.00  E-value=2.2e-51  Score=400.49  Aligned_cols=145  Identities=32%  Similarity=0.589  Sum_probs=69.8

Q ss_pred             EEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHHHHhCCC
Q 042478          810 GLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVE  889 (954)
Q Consensus       810 ~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k~~~~~  889 (954)
                      ++|||+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+||||+||||+|++++||+|+||+||||++
T Consensus         3 ~~ikL~v~aG~A~p~PplGPaLG~~Gvni~~fck~fN~~T~~~~G~~ipV~Itv~~drsf~f~vk~Ppas~Ll~kaagi~   82 (162)
T 1vq8_I            3 GTIEVLVPGGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAFDGTEVPVTVKYDDDGSFEIEVGVPPTAELIKDEAGFE   82 (162)
T ss_dssp             ----------------------------------------------------------------CCCCHHHHHHHTTSCC
T ss_pred             eEEEEEeecCccCCCCCcccccccCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHHHhCCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCCCchhhhccC
Q 042478          890 KGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKKEL  954 (954)
Q Consensus       890 ~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~~~~~~~~~  954 (954)
                      +|+++|+++++|+||++||+|||++|++|+++++|+++||+|+||||||||+|+++.|+++.++|
T Consensus        83 kgs~~p~k~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g~~p~~vi~~I  147 (162)
T 1vq8_I           83 TGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTSLGVTIEGENPREFKERI  147 (162)
T ss_dssp             SCCSSTTTSCCEEECHHHHHHHHHHTTTTCCCSSHHHHHHHHHHHTTTTTEEEC-----------
T ss_pred             CCCCCCCCceeeeeeHHHHHHHHHHHHHhhcccCHHHHHHHHHhhhHhCeEEEeccCHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999987754

>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3izc_J 3izs_J 3j16_H* 3o5h_L 3jyw_K 1s1i_K

Probab=100.00  E-value=1.8e-51  Score=402.27  Aligned_cols=150  Identities=21%  Similarity=0.347  Sum_probs=70.6

Q ss_pred             ecCCCCCCccccccceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEE
Q 042478          793 AMAPPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFI  872 (954)
Q Consensus       793 ~~~~~~~~~~~~~~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~  872 (954)
                      ||+|+.          +++|||+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+||| +||+|+|+
T Consensus         4 k~~~~~----------~~~ikL~v~aG~A~p~PplGPaLG~~Gvni~~fck~fN~~T~~~~G~~ipV~Itv-~drsf~f~   72 (165)
T 2zkr_i            4 KFDPNE----------IKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTI-QNRQAQIE   72 (165)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             CCCCCe----------eEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHHhhcCCCeEEEEEEE-cCCeeeEE
Confidence            777765          8899999999999999999999999999999999999999999999999999999 79999999


Q ss_pred             EeCCCHHHHHHHHhCCCCCCCC--CCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCCCchhh
Q 042478          873 LKTPPASVLLLKAAGVEKGSKD--PKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETK  950 (954)
Q Consensus       873 ~~~p~~s~li~k~~~~~~~~~~--~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~~~~~  950 (954)
                      + +||+|+||+||||+++|+++  |+++++|+||++||+|||++|++|+++++|+++||+|+||||||||+|+++.|+++
T Consensus        73 v-tPpas~Ll~kaag~~~gs~k~~p~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g~~P~ev  151 (165)
T 2zkr_i           73 V-VPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDI  151 (165)
T ss_dssp             C-CCCHHHHHHHHHTCSSCCSSTTTCSSCSEEECHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHTEEEC-------
T ss_pred             E-CCCHHHHHHHHhCCCCCCcccccCceEEeeEeHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHhCeeEEeCCCHHHH
Confidence            9 99999999999999999965  89999999999999999999999999999999999999999999999999999998


Q ss_pred             hccC
Q 042478          951 KKEL  954 (954)
Q Consensus       951 ~~~~  954 (954)
                      .++|
T Consensus       152 ~~~I  155 (165)
T 2zkr_i          152 IDDI  155 (165)
T ss_dssp             ----
T ss_pred             HHHH
Confidence            8764

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1

Probab=100.00  E-value=4.8e-49  Score=472.46  Aligned_cols=365  Identities=25%  Similarity=0.256  Sum_probs=269.2

Q ss_pred             ccCCCceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEccceeEEEEEcCH----HHHHHHH--cCCCe
Q 042478           28 VGATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTK----TQAEKIA--ELPGV  101 (954)
Q Consensus        28 ~~~~~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~~~~nGfs~~l~~----~~~~~L~--~~p~V  101 (954)
                      .+..++.|||.|++..         ...++++.       .+.++.+++. .+++++++++.    +.+++|+  ++|+|
T Consensus        27 ~~~~~~~~IV~~k~~~---------~~~~~~~~-------~g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~V   89 (671)
T 1r6v_A           27 GEYTEGKILVGYNDRS---------EVDKIVKA-------VNGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGI   89 (671)
T ss_dssp             TSBCTTEEEEEESSHH---------HHHHHHHH-------HTCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSE
T ss_pred             CccCCccEEEEECCCc---------CHHHHHHh-------cCCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCCCc
Confidence            3446789999999741         11222222       2346888886 79999999965    3356776  48999


Q ss_pred             eEEEeCceeeccccc----c-----------------------ccccccccccCcccc-ccCCCCCCceEEEEEeCCCCC
Q 042478          102 VQVIPNGILKLHTTR----S-----------------------WEFMGLHYYQSSKNL-STESNMGEGTIIGIIDTGVWP  153 (954)
Q Consensus       102 ~~V~~~~~~~l~t~~----s-----------------------~~~~gl~~~~~~~~~-w~~~~~G~GVvVgVIDTGId~  153 (954)
                      ++|+|++.+++....    .                       ...|++... ++..+ |+. .+|+||+|||||||||+
T Consensus        90 ~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I-~~~~a~w~~-~tG~gV~VAVIDTGVd~  167 (671)
T 1r6v_A           90 RYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAI-GVTQQLWEE-ASGTNIIVAVVDTGVDG  167 (671)
T ss_dssp             EEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHT-TCCHHHHHH-CSCTTCEEEEEESCCBT
T ss_pred             eEEecCeEEEeccccccCcccccccccccccccccccccccccccCCchhcc-CCchhhhhc-cCCCCCEEEEEeCCCCC
Confidence            999999876653100    0                       011222211 34556 888 89999999999999999


Q ss_pred             CCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhcccccccc-----ceeccCCCc
Q 042478          154 ESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGL-----ARGGAPLAH  228 (954)
Q Consensus       154 ~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G~-----~~GvAP~A~  228 (954)
                      +||+|.++...         +.+..        .+..+.    ...+..+.+|||| |++|+++|.     +.||||+|+
T Consensus       168 ~HpdL~~~~~~---------g~~~~--------~~~~~p----~~~d~~d~~gHGT-hVAGiIAa~~ng~gv~GVAP~A~  225 (671)
T 1r6v_A          168 THPDLEGQVIA---------GYRPA--------FDEELP----AGTDSSYGGSAGT-HVAGTIAAKKDGKGIVGVAPGAK  225 (671)
T ss_dssp             TSGGGTTTBCC---------EEEGG--------GTEEEC----TTCBCCTTCSHHH-HHHHHHHCCCSSSSCCCSCTTSE
T ss_pred             CCccccccEEe---------ccccc--------CCCcCC----CCCCCccCCCcch-hhhhhhhccCCCCceEEECCCCE
Confidence            99999864221         11100        000000    0001111237999 999987664     689999999


Q ss_pred             EEEEEEecC------CC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCC
Q 042478          229 LAIYKACWD------IG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGND  301 (954)
Q Consensus       229 L~~yKv~~~------~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~  301 (954)
                      |+.+|+++.      .+ ...+.+++||+||+++|+||||||||+..    + .  ..+..++.+|.++|++||+||||+
T Consensus       226 I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~----~-s--~~l~~Ai~~A~~~GvlvVaAAGN~  298 (671)
T 1r6v_A          226 IMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG----Y-S--YTMKEAFDYAMEHGVVMVVSAGNN  298 (671)
T ss_dssp             EEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC----C-C--HHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             EEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC----C-C--HHHHHHHHHHHhCCCEEEEeCCCC
Confidence            999999976      23 34567899999999999999999999864    2 2  578889999999999999999999


Q ss_pred             CCCC-CccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcc
Q 042478          302 GPVA-QTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNAT  380 (954)
Q Consensus       302 G~~~-~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~  380 (954)
                      |.+. ..+++..|++|+|||++.+..                                                      
T Consensus       299 g~~~~~~yPA~~~~VItVgA~d~~g~------------------------------------------------------  324 (671)
T 1r6v_A          299 TSDSHHQYPAGYPGVIQVAALDYYGG------------------------------------------------------  324 (671)
T ss_dssp             SSSCCCCBTTTSTTCEEEEEEEEETT------------------------------------------------------
T ss_pred             CCCCCccCcccCCCeEEEEEEcCCCC------------------------------------------------------
Confidence            9764 556778899999998642210                                                      


Q ss_pred             cccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCc
Q 042478          381 LAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPE  460 (954)
Q Consensus       381 ~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~  460 (954)
                                                                                                      
T Consensus       325 --------------------------------------------------------------------------------  324 (671)
T 1r6v_A          325 --------------------------------------------------------------------------------  324 (671)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCC------------CCCCceEeecCCCchhHHHHH
Q 042478          461 TVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGS------------KDIQGYALLSGTSMSCPHVAG  528 (954)
Q Consensus       461 ~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~------------~~~~~y~~~SGTSMAaP~VAG  528 (954)
                             ...+++|||+||..        ||+|||++|+++++....            ..++.|..++|||||||||||
T Consensus       325 -------~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~~~y~~~sGTSmAAP~VAG  389 (671)
T 1r6v_A          325 -------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTG  389 (671)
T ss_dssp             -------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHH
T ss_pred             -------ceeeccccCCCCCe--------eEEecCCCEEeecCCCCccccccccccccccCCCceEEecCccHHHHHHHH
Confidence                   01368899999976        999999999999875321            113579999999999999999


Q ss_pred             HHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccCCCccccCCchhH
Q 042478          529 IAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDY  602 (954)
Q Consensus       529 ~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~pglvyd~~~~dy  602 (954)
                      ++|||+|++|+|+|++||++|++||++++..|             .+..||+|+||+.+|++..|.++....||
T Consensus       390 vaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g-------------~d~~~G~G~vna~~Al~~~l~~~~~~~~~  450 (671)
T 1r6v_A          390 VVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG-------------WDHDTGYGLVKLDAALQGPLPTQGGVEEF  450 (671)
T ss_dssp             HHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS-------------CBTTTBTCBCCHHHHHHCCCCSSSEEEEE
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCC-------------CCCCcccceeCHHHHhhhhcCCCCCccce
Confidence            99999999999999999999999999764332             34689999999999999887766544444

>3j21_H 50S ribosomal protein L11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=5.9e-51  Score=398.26  Aligned_cols=145  Identities=36%  Similarity=0.600  Sum_probs=128.3

Q ss_pred             EEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEE-eCCCeEEEEEeCCCHHHHHHHHhCC
Q 042478          810 GLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITV-YDDRSFTFILKTPPASVLLLKAAGV  888 (954)
Q Consensus       810 ~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v-~~dr~~~~~~~~p~~s~li~k~~~~  888 (954)
                      ++|+|+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+||| |+||||+|++++||+|+||+||||+
T Consensus         4 ~~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~~G~~IpV~ItV~~~dRsf~f~vk~Ppas~Ll~Ka~g~   83 (164)
T 3j21_H            4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKDFAGMQVPVKIIVDPVTKQFEIEVGVPPTSQLIKKELGL   83 (164)
T ss_dssp             SSSCEEEESSCCCCHHHHHHHCCCSSSCTTHHHHHHHHHHCCSSCCEEEECBCCCTTTCCCCBCCSSSSSTTHHHHHHCC
T ss_pred             eEEEEEEecCccCCCCCcchhhcccCCcHHHHHHHHHHHHhhcCCCeeEEEEEEecCCceEEEEEcCCCHHHHHHHHhCC
Confidence            368999999999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             CCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCCCchhhhccC
Q 042478          889 EKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKKEL  954 (954)
Q Consensus       889 ~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~~~~~~~~~  954 (954)
                      ++|+++|+++++|+||++||+|||++|++|+++++|+++||+|+||||||||+|+++.|+++.++|
T Consensus        84 ~kgs~~p~k~~vG~it~~qi~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g~~p~~v~~~i  149 (164)
T 3j21_H           84 EKGSGEPKHNIVGNLTMEQVIKIAKMKKDQMLALTLKAAAKEVIGTALSMGVTVEGKDPREVQKEI  149 (164)
T ss_dssp             CSCCSSTTTCCSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHCCC---------------
T ss_pred             CCCCCCCCCceeeeeeHHHHHHHHHHHHhhhcccCHHHHHHHHHHHhhcceEEEeccCHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999987764

>3r8s_I 50S ribosomal protein L11; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I* 2qao_I* 2qba_I* 2qbc_I* 2qbe_I 2qbg_I 2qbi_I* 2qbk_I* 2qov_I 2qox_I 2qoz_I* 2qp1_I* 2rdo_I 2vhm_I ...

Probab=100.00  E-value=2e-52  Score=398.66  Aligned_cols=140  Identities=56%  Similarity=0.880  Sum_probs=137.2

Q ss_pred             ccceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCC-CceeeEEEEEeCCCeEEEEEeCCCHHHHHH
Q 042478          805 AKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKA-GYVIPVEITVYDDRSFTFILKTPPASVLLL  883 (954)
Q Consensus       805 ~~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~-g~~i~v~i~v~~dr~~~~~~~~p~~s~li~  883 (954)
                      +||+.++|||+|+||+|+|+|||||+|||+|||+|+||||||++|++|+ |++|||+||||+||||+|++++||+|+||+
T Consensus         1 akk~~~~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~k~G~~ipV~itv~~drsf~f~vk~Ppas~Ll~   80 (141)
T 3r8s_I            1 AKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLK   80 (141)
T ss_dssp             CCCCSCCCCCCSCSSSSSCTTTTCTTSSSSSCCSSSTTTTGGGTHHHHCSCSCCCBCCCCSSSSSCCCCBCCCCSSTTTT
T ss_pred             CceEEEEEEEEEecCccCCCCCcchhhccCCCCHHHHHHHHHHHHhcccCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHH
Confidence            4788999999999999999999999999999999999999999999976 999999999999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcC
Q 042478          884 KAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDP  944 (954)
Q Consensus       884 k~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~  944 (954)
                      ||+|+++||++|+++++|+||++||+|||++|++|+++++|+++||+|+||||||||+||+
T Consensus        81 ka~g~~~gs~~p~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g  141 (141)
T 3r8s_I           81 KAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED  141 (141)
T ss_dssp             SSSSCSSCCSSTTTSCCSCCCSSTTSTTTSCCSSCCSCSCTTTTTTTSTTTSSSSCCCCCC
T ss_pred             HHhCCCCCCCCCCCcEeeEecHHHHHHHHHHHHhhhcCcCHHHHHHHHHHhhhcceEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999999986

>4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A

Probab=100.00  E-value=4.6e-47  Score=429.56  Aligned_cols=290  Identities=22%  Similarity=0.238  Sum_probs=191.1

Q ss_pred             ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccc-----cc------eecc
Q 042478          129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKL-----IG------ARWF  197 (954)
Q Consensus       129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~ki-----ig------a~~~  197 (954)
                      ...+|.++..|+||+|||||||||++||+|++....  +....|+..++...... ...+..+     .+      ...+
T Consensus        20 ~~~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   96 (357)
T 4h6x_A           20 LADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVS--KVFPYWHEPAEPITPED-YAAFQSIRDQGLKGKEKEEALEAV   96 (357)
T ss_dssp             HHHHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEE--ECCCTTSCCCCCCCHHH-HHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcc--cccccccccccccCccc-ccccccccCccccccccccccccc
Confidence            457999999999999999999999999999876544  44556655443221100 0000000     00      0000


Q ss_pred             ccCC-C--CCCCchhhhcccccccc----ceeccCCCcEEEEEEecCCC------CChHHHHHHHHHHhcCCccEEEecc
Q 042478          198 IKGI-M--DMINASTNTDEGLAAGL----ARGGAPLAHLAIYKACWDIG------CTDADVLKAFDKAIHDGVDVLSVSI  264 (954)
Q Consensus       198 ~~~~-~--~~~G~GTa~v~G~a~G~----~~GvAP~A~L~~yKv~~~~g------~~~~dil~Aid~Ai~dgvdVINlSl  264 (954)
                      ..+. +  +.+|||| ||+|+++|.    +.||||+|+|+.+|++....      +...++++||+||++.|++||||||
T Consensus        97 ~~~~~~~~D~~gHGT-hVAGiiag~~~~g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~  175 (357)
T 4h6x_A           97 IPDTKDRIVLNDHAC-HVTSTIVGQEHSPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAF  175 (357)
T ss_dssp             CTTTHHHHHHHHHHH-HHHHHHHCCTTSSCCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHHTTCSEEEEC-
T ss_pred             cCCCCCCcCCCCcHH-HHHHHHhccCCCCceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHHcCCCEEeecc
Confidence            0000 0  0117999 999987664    68999999999999985431      4456789999999999999999999


Q ss_pred             cCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeee
Q 042478          265 GNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSI  344 (954)
Q Consensus       265 G~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~  344 (954)
                      |...... ...  +.+..++.+|.++|++||+||||+|.....+++..|++|+|||++.                     
T Consensus       176 G~~~~~~-~~~--~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~---------------------  231 (357)
T 4h6x_A          176 CRPTQTS-EGE--EILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKV---------------------  231 (357)
T ss_dssp             -------------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECT---------------------
T ss_pred             ccCCccc-cch--hHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEecc---------------------
Confidence            9875222 333  7788899999999999999999999887788888899999998532                     


Q ss_pred             eccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCC
Q 042478          345 DIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLD  424 (954)
Q Consensus       345 ~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~  424 (954)
                                                                                                      
T Consensus       232 --------------------------------------------------------------------------------  231 (357)
T 4h6x_A          232 --------------------------------------------------------------------------------  231 (357)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCC
Q 042478          425 SCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPP  504 (954)
Q Consensus       425 ~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~  504 (954)
                                                                 .+.++.|||||+..     .||||+|||++|+++++.
T Consensus       232 -------------------------------------------~~~~~~fSn~G~~~-----~~~di~APG~~i~s~~~~  263 (357)
T 4h6x_A          232 -------------------------------------------DGTPCHFSNWGGNN-----TKEGILAPGEEILGAQPC  263 (357)
T ss_dssp             -------------------------------------------TSSBCTTCC---CT-----TTTEEEEECSSEEECCTT
T ss_pred             -------------------------------------------CCcccccccCCCCC-----CccceeecCCCeEeccCC
Confidence                                                       23468899999754     589999999999999987


Q ss_pred             CCCCCCCceEeecCCCchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCC
Q 042478          505 IGSKDIQGYALLSGTSMSCPHVAGIAALIKS----LHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGG  580 (954)
Q Consensus       505 ~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q----~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~Ga  580 (954)
                           ++.|..++|||||||||||++|||++    .+|.|+|+|||++|++||++++..           ....+..||+
T Consensus       264 -----~~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~-----------~~~~~~~~G~  327 (357)
T 4h6x_A          264 -----TEEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPE-----------VVEEPERCLR  327 (357)
T ss_dssp             -----CSCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-------------------------CTT
T ss_pred             -----CCcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCC-----------CCCCccccee
Confidence                 36678899999999999999999996    466899999999999999976422           2234567999


Q ss_pred             CccCcccccC
Q 042478          581 GHVNPNKAMN  590 (954)
Q Consensus       581 G~vn~~~Al~  590 (954)
                      |+||+.+|++
T Consensus       328 G~vn~~~A~~  337 (357)
T 4h6x_A          328 GFVNIPGAMK  337 (357)
T ss_dssp             CBCCHHHHHH
T ss_pred             EEecHHHHHH
Confidence            9999999987

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...

Probab=100.00  E-value=4e-46  Score=406.87  Aligned_cols=252  Identities=31%  Similarity=0.443  Sum_probs=208.9

Q ss_pred             ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478          129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS  208 (954)
Q Consensus       129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G  208 (954)
                      +..+|..+++|+||+|||||||||++||+|+..  .              +.+|...         .   ....+.+|||
T Consensus        13 ~~~~~~~g~~G~gv~VaViDtGid~~h~~l~~~--~--------------g~~~~~~---------~---~~~~d~~gHG   64 (274)
T 1r0r_E           13 ADKVQAQGFKGANVKVAVLDTGIQASHPDLNVV--G--------------GASFVAG---------E---AYNTDGNGHG   64 (274)
T ss_dssp             HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE--E--------------EEECSTT---------C---CTTCCSSSHH
T ss_pred             CHHHHhcCCCCCCCEEEEEcCCCCCCCHhHcCC--C--------------CccccCC---------C---CCCCCCCCCH
Confidence            568999999999999999999999999999411  0              0011000         0   0011223899


Q ss_pred             hhhcccccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHH
Q 042478          209 TNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAI  282 (954)
Q Consensus       209 Ta~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~  282 (954)
                      | |++|++++.     +.||||+|+|+.+|+++..+ +..+++++||+||+++|++|||||||...    . .  ..+..
T Consensus        65 T-~vAgiia~~~~~~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~----~-~--~~~~~  136 (274)
T 1r0r_E           65 T-HVAGTVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS----G-S--TAMKQ  136 (274)
T ss_dssp             H-HHHHHHHCCSSSSBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSS----C-C--HHHHH
T ss_pred             H-HHHHHHHccCCCCceEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCC----C-c--HHHHH
Confidence            9 999987664     68999999999999998776 77889999999999999999999999874    1 2  67888


Q ss_pred             HHHHHHHCCCEEEEeCCCCCCCC----CccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeee
Q 042478          283 GSFHAIAKGITVVSSAGNDGPVA----QTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTY  358 (954)
Q Consensus       283 a~~~A~~~Gi~VV~AAGN~G~~~----~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~  358 (954)
                      ++.++.++|++||+||||+|...    ...++..|++|+|||++.                                   
T Consensus       137 ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~-----------------------------------  181 (274)
T 1r0r_E          137 AVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS-----------------------------------  181 (274)
T ss_dssp             HHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT-----------------------------------
T ss_pred             HHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecC-----------------------------------
Confidence            99999999999999999999762    345567789999997431                                   


Q ss_pred             ccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhh
Q 042478          359 SERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEV  438 (954)
Q Consensus       359 ~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~  438 (954)
                                                                                                      
T Consensus       182 --------------------------------------------------------------------------------  181 (274)
T 1r0r_E          182 --------------------------------------------------------------------------------  181 (274)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecC
Q 042478          439 GTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSG  518 (954)
Q Consensus       439 g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SG  518 (954)
                                                   .+.++.||++||.+        ||+|||++|+++++.      +.|..++|
T Consensus       182 -----------------------------~~~~~~~S~~G~~~--------di~APG~~i~s~~~~------~~~~~~sG  218 (274)
T 1r0r_E          182 -----------------------------NSNRASFSSVGAEL--------EVMAPGAGVYSTYPT------NTYATLNG  218 (274)
T ss_dssp             -----------------------------TSCBCTTCCCSTTE--------EEEEECSSEEEEETT------TEEEEECS
T ss_pred             -----------------------------CCCcCccCCCCCCc--------eEEeCCCCeEeecCC------CCEEEecc
Confidence                                         13467899999854        999999999999986      78999999


Q ss_pred             CCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478          519 TSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN  590 (954)
Q Consensus       519 TSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~  590 (954)
                      ||||||||||++|||+|++|+|++++||++|++||++++                +++.||+|+||+.+|++
T Consensus       219 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g----------------~~~~~G~G~~~~~~A~~  274 (274)
T 1r0r_E          219 TSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG----------------SSFYYGKGLINVEAAAQ  274 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS----------------CHHHHTTCBCCHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC----------------CCCCcccCccCHHHHhC
Confidence            999999999999999999999999999999999999652                24679999999999985

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1

Probab=100.00  E-value=1e-45  Score=404.87  Aligned_cols=250  Identities=33%  Similarity=0.390  Sum_probs=203.2

Q ss_pred             ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCC---CCCC
Q 042478          129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGI---MDMI  205 (954)
Q Consensus       129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~---~~~~  205 (954)
                      +..+|+.+..|+||+|||||||||++||+|.++.                             +..++|.++.   .+.+
T Consensus        20 ~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~~-----------------------------~~~~~~~~~~~~~~d~~   70 (280)
T 1dbi_A           20 TDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKV-----------------------------IKGYDFVDNDYDPMDLN   70 (280)
T ss_dssp             HHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTTE-----------------------------EEEEETTTTBSCCCCSS
T ss_pred             cHHHHhhcCCCCCCEEEEEeCCcCCCChhhccCc-----------------------------ccceeccCCCCCCCCCC
Confidence            6789999888889999999999999999997431                             1112222111   1223


Q ss_pred             Cchhhhcccccccc------ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCccc
Q 042478          206 NASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRD  278 (954)
Q Consensus       206 G~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d  278 (954)
                      |||| |++|++++.      +.||||+|+|+.+|+++..+ ++.+++++||+||+++|++|||||||...     ..  .
T Consensus        71 gHGT-~vAgiia~~~~~~~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~-----~~--~  142 (280)
T 1dbi_A           71 NHGT-HVAGIAAAETNNATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC-----HT--T  142 (280)
T ss_dssp             SHHH-HHHHHHHCCCSSSSSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC-----CC--H
T ss_pred             CcHH-HHHHHHhCcCCCCCcceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-----CC--H
Confidence            8999 999987664      58999999999999998776 78899999999999999999999999874     12  6


Q ss_pred             HHHHHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeee
Q 042478          279 SIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTY  358 (954)
Q Consensus       279 ~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~  358 (954)
                      .+..++.+|.++|++||+||||+|......++..|++|+|||++.                                   
T Consensus       143 ~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~-----------------------------------  187 (280)
T 1dbi_A          143 TLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ-----------------------------------  187 (280)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT-----------------------------------
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCC-----------------------------------
Confidence            788899999999999999999999877677788899999998531                                   


Q ss_pred             ccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhh
Q 042478          359 SERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEV  438 (954)
Q Consensus       359 ~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~  438 (954)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (280)
T 1dbi_A          188 --------------------------------------------------------------------------------  187 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecC
Q 042478          439 GTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSG  518 (954)
Q Consensus       439 g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SG  518 (954)
                                                   .+.++.||++||.+        ||+|||++|+++++.      +.|..++|
T Consensus       188 -----------------------------~~~~~~~S~~G~~~--------dv~ApG~~i~s~~~~------~~~~~~sG  224 (280)
T 1dbi_A          188 -----------------------------YDRLASFSNYGTWV--------DVVAPGVDIVSTITG------NRYAYMSG  224 (280)
T ss_dssp             -----------------------------TSCBCTTBCCSTTC--------CEEEECSSEEEEETT------TEEEEECS
T ss_pred             -----------------------------CCCcCCCCCCCCCc--------eEEEecCCeEeecCC------CCEEEccC
Confidence                                         13467899999865        999999999999986      78999999


Q ss_pred             CCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478          519 TSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN  590 (954)
Q Consensus       519 TSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~  590 (954)
                      ||||||||||++|||++  |++++.+||++|++||+++...               ...||+|+||+.+|++
T Consensus       225 TS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~~---------------~~~~G~G~vn~~~A~~  279 (280)
T 1dbi_A          225 TSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGT---------------GTYFKYGRINSYNAVT  279 (280)
T ss_dssp             HHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTTB---------------TTTBSSEECCHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCCC---------------CCcccCCEECHHHHhc
Confidence            99999999999999987  8999999999999999975421               2469999999999986

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A*

Probab=100.00  E-value=7e-46  Score=403.68  Aligned_cols=251  Identities=32%  Similarity=0.443  Sum_probs=210.8

Q ss_pred             ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478          129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS  208 (954)
Q Consensus       129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G  208 (954)
                      +..+|..+++|+||+|||||||| .+||+|+...                +.+|...            .....+.+|||
T Consensus        13 ~~~a~~~g~~G~gv~VaViDtGi-~~h~~l~~~~----------------~~~~~~~------------~~~~~d~~gHG   63 (269)
T 1gci_A           13 APAAHNRGLTGSGVKVAVLDTGI-STHPDLNIRG----------------GASFVPG------------EPSTQDGNGHG   63 (269)
T ss_dssp             HHHHHHTTCSCTTCEEEEEESCC-CCCTTCCEEE----------------EEECSTT------------CCSCSCSSSHH
T ss_pred             cHHHHhcCCCCCCCEEEEECCCC-CCCHhhcccC----------------CcccCCC------------CCCCCCCCCCh
Confidence            56899999999999999999999 8999994210                0011000            00011223899


Q ss_pred             hhhcccccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHH
Q 042478          209 TNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAI  282 (954)
Q Consensus       209 Ta~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~  282 (954)
                      | |++|++++.     +.||||+|+|+.+|+++..+ +..+++++||+||+++|++|||||||...    . .  ..+..
T Consensus        64 T-~vAgiia~~~~~~~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~Vin~S~G~~~----~-~--~~~~~  135 (269)
T 1gci_A           64 T-HVAGTIAALNNSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS----P-S--ATLEQ  135 (269)
T ss_dssp             H-HHHHHHHCCCSSSBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSS----C-C--HHHHH
T ss_pred             H-HHHHHHhcCcCCCCcEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC----C-C--HHHHH
Confidence            9 999987664     68999999999999998765 77889999999999999999999999874    1 2  57888


Q ss_pred             HHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeecccc
Q 042478          283 GSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERI  362 (954)
Q Consensus       283 a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~  362 (954)
                      ++.++.++|++||+||||+|.....+++..|++|+|||++.                                       
T Consensus       136 ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~---------------------------------------  176 (269)
T 1gci_A          136 AVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ---------------------------------------  176 (269)
T ss_dssp             HHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT---------------------------------------
T ss_pred             HHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecC---------------------------------------
Confidence            89999999999999999999887778888899999998531                                       


Q ss_pred             ccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHH
Q 042478          363 AFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQI  442 (954)
Q Consensus       363 ~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l  442 (954)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (269)
T 1gci_A          177 --------------------------------------------------------------------------------  176 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCch
Q 042478          443 LSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMS  522 (954)
Q Consensus       443 ~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMA  522 (954)
                                               .+.++.||++||.+        ||+|||++|+++++.      +.|..++|||||
T Consensus       177 -------------------------~~~~~~~S~~G~~~--------di~APG~~i~s~~~~------~~~~~~sGTS~A  217 (269)
T 1gci_A          177 -------------------------NNNRASFSQYGAGL--------DIVAPGVNVQSTYPG------STYASLNGTSMA  217 (269)
T ss_dssp             -------------------------TSCBCTTCCCSTTE--------EEEEECSSEEEEETT------TEEEEECSHHHH
T ss_pred             -------------------------CCCCCCCCCCCCCc--------ceEecCCCeEeecCC------CCEEEcCcHHHH
Confidence                                     13467899999975        999999999999986      789999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478          523 CPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN  590 (954)
Q Consensus       523 aP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~  590 (954)
                      ||||||++|||+|++|+|++.+||++|++||++++                +++.||+|+||+.+|++
T Consensus       218 aP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g----------------~~~~~G~G~vn~~~A~~  269 (269)
T 1gci_A          218 TPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG----------------STNLYGSGLVNAEAATR  269 (269)
T ss_dssp             HHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS----------------CHHHHTTCBCCHHHHTC
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC----------------CCCCcccCccCHHHHcC
Confidence            99999999999999999999999999999999652                24579999999999985

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...

Probab=100.00  E-value=7.9e-46  Score=405.93  Aligned_cols=255  Identities=33%  Similarity=0.472  Sum_probs=210.7

Q ss_pred             ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478          129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS  208 (954)
Q Consensus       129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G  208 (954)
                      +..+|..+++|+||+|||||||||++||+|+...                +.+|....           .....+.+|||
T Consensus        13 ~~~~~~~g~~G~gv~VaViDtGid~~h~~l~~~~----------------g~~~~~~~-----------~~~~~d~~gHG   65 (281)
T 1to2_E           13 APALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAG----------------GASMVPSE-----------TNPFQDNNSHG   65 (281)
T ss_dssp             HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEEE----------------EEECCTTC-----------CCTTCCSSSHH
T ss_pred             hHHHHhcCCCCCCCEEEEEcCCCCCCCHHHcCcC----------------CccccCCC-----------CCCCCCCCCcH
Confidence            5689999999999999999999999999995210                00010000           00011223899


Q ss_pred             hhhcccccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHH
Q 042478          209 TNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAI  282 (954)
Q Consensus       209 Ta~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~  282 (954)
                      | |++|++++.     +.||||+|+|+.+|+++..+ +..+++++||+||+++|++|||||||...    . .  ..+..
T Consensus        66 T-~vAgiia~~~~~~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~----~-~--~~~~~  137 (281)
T 1to2_E           66 T-HVAGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS----G-S--AALKA  137 (281)
T ss_dssp             H-HHHHHHHCCSSSSSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSC----C-C--HHHHH
T ss_pred             H-HHHHHHhccCCCCcceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCCcEEEECCcCCC----C-C--HHHHH
Confidence            9 999987664     68999999999999998766 77889999999999999999999999874    1 2  67888


Q ss_pred             HHHHHHHCCCEEEEeCCCCCCCC----CccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeee
Q 042478          283 GSFHAIAKGITVVSSAGNDGPVA----QTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTY  358 (954)
Q Consensus       283 a~~~A~~~Gi~VV~AAGN~G~~~----~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~  358 (954)
                      ++.++.++|++||+||||+|...    ...++..|++|+|||++.                                   
T Consensus       138 ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~-----------------------------------  182 (281)
T 1to2_E          138 AVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS-----------------------------------  182 (281)
T ss_dssp             HHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT-----------------------------------
T ss_pred             HHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecC-----------------------------------
Confidence            99999999999999999999762    345567789999997431                                   


Q ss_pred             ccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhh
Q 042478          359 SERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEV  438 (954)
Q Consensus       359 ~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~  438 (954)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (281)
T 1to2_E          183 --------------------------------------------------------------------------------  182 (281)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecC
Q 042478          439 GTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSG  518 (954)
Q Consensus       439 g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SG  518 (954)
                                                   .+.++.||++||.+        ||+|||++|+++++.      +.|..++|
T Consensus       183 -----------------------------~~~~~~fS~~G~~~--------di~APG~~i~s~~~~------~~~~~~sG  219 (281)
T 1to2_E          183 -----------------------------SNQRASFSSVGPEL--------DVMAPGVSIQSTLPG------NKYGAYNG  219 (281)
T ss_dssp             -----------------------------TSCBCTTCCCSTTC--------CEEEECSSEEEEETT------TEEEEECB
T ss_pred             -----------------------------CCCcCCcCCCCCCc--------eEEecCCCeEeecCC------CCEEecCc
Confidence                                         13467899999965        999999999999986      78999999


Q ss_pred             CCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccCCC
Q 042478          519 TSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPG  592 (954)
Q Consensus       519 TSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~pg  592 (954)
                      ||||||||||++|||+|++|+|++++||++|++||++++                +++.||+|+||+.+|+++.
T Consensus       220 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g----------------~~~~~G~G~v~~~~a~~~~  277 (281)
T 1to2_E          220 TSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG----------------DSFYYGKGLINVQAAAQHH  277 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS----------------CHHHHTTCBCCHHHHTSSS
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC----------------CCCCcccceecHHHHhhhh
Confidence            999999999999999999999999999999999999652                3467999999999999853

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*

Probab=100.00  E-value=6e-46  Score=415.39  Aligned_cols=259  Identities=31%  Similarity=0.414  Sum_probs=206.4

Q ss_pred             ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478          129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS  208 (954)
Q Consensus       129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G  208 (954)
                      +..+|..+++|+||+|||||||||++||+|.++...              +.+|....      +.  ......+.+|||
T Consensus        30 ~~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~~~~--------------~~~~~~~~------~~--~~~~~~d~~gHG   87 (327)
T 2x8j_A           30 APAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIG--------------GVNLTTDY------GG--DETNFSDNNGHG   87 (327)
T ss_dssp             HHHHHHHHGGGTTCEEEEEESCCCTTCTTTGGGEEE--------------EEECSSGG------GG--CTTCCCCSSSHH
T ss_pred             hHHHHhcCCCCCCCEEEEEcCCCCCCChhHhhcccC--------------CccccCCC------CC--CCCCCCCCCCch
Confidence            668999999999999999999999999999753211              00110000      00  000012223899


Q ss_pred             hhhcccccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhc------CCccEEEecccCCCCCCCccCc
Q 042478          209 TNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIH------DGVDVLSVSIGNEIPLFSYIDQ  276 (954)
Q Consensus       209 Ta~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~------dgvdVINlSlG~~~~~~~~~~~  276 (954)
                      | |++|+++|.     +.||||+|+|+.+|+++..| ++.+++++||+||++      ++++|||||||...    . . 
T Consensus        88 T-~VAgiia~~~~~~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~Vin~S~G~~~----~-~-  160 (327)
T 2x8j_A           88 T-HVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPT----D-S-  160 (327)
T ss_dssp             H-HHHHHHHCCCCSSBCCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHHHHCCCTTSCCCSEEEECEEBSC----C-C-
T ss_pred             H-HHHHHHhccCCCCCcEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHhhcccccCCceEEEECCCcCC----C-C-
Confidence            9 999987765     78999999999999998776 778899999999999      89999999999874    1 2 


Q ss_pred             ccHHHHHHHHHHHCCCEEEEeCCCCCCCC-----CccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCC
Q 042478          277 RDSIAIGSFHAIAKGITVVSSAGNDGPVA-----QTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSH  351 (954)
Q Consensus       277 ~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~-----~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~  351 (954)
                       ..+..++.+|.++|++||+||||+|...     ...++..|++|+|||++.                            
T Consensus       161 -~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~----------------------------  211 (327)
T 2x8j_A          161 -EELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDF----------------------------  211 (327)
T ss_dssp             -HHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECT----------------------------
T ss_pred             -HHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECC----------------------------
Confidence             5788889999999999999999999652     345667799999998531                            


Q ss_pred             ceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccce
Q 042478          352 GFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPC  431 (954)
Q Consensus       352 ~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~  431 (954)
                                                                                                      
T Consensus       212 --------------------------------------------------------------------------------  211 (327)
T 2x8j_A          212 --------------------------------------------------------------------------------  211 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCC
Q 042478          432 IKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQ  511 (954)
Q Consensus       432 ~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~  511 (954)
                                                          .+.++.||++||.+        ||+|||++|+++++.      +
T Consensus       212 ------------------------------------~~~~~~fS~~G~~~--------di~APG~~i~s~~~~------~  241 (327)
T 2x8j_A          212 ------------------------------------DLRLSDFTNTNEEI--------DIVAPGVGIKSTYLD------S  241 (327)
T ss_dssp             ------------------------------------TCCBSCC---CCCC--------SEEEECSSEEEECST------T
T ss_pred             ------------------------------------CCCCCCccCCCCCc--------eEecCcCceEeecCC------C
Confidence                                                13467899999854        999999999999986      7


Q ss_pred             ceEeecCCCchhHHHHHHHHHHHhh-----CCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcc
Q 042478          512 GYALLSGTSMSCPHVAGIAALIKSL-----HRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPN  586 (954)
Q Consensus       512 ~y~~~SGTSMAaP~VAG~aALl~q~-----~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~  586 (954)
                      .|..++|||||||||||++|||+|+     +|.+++.+||++|++||++++               .++..||+|+||+.
T Consensus       242 ~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g---------------~~~~~~G~G~vd~~  306 (327)
T 2x8j_A          242 GYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIG---------------FTAQAEGNGFLTLD  306 (327)
T ss_dssp             CEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCS---------------SCHHHHTTCEECTT
T ss_pred             CEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCC---------------CCCCceeeeEECHH
Confidence            8999999999999999999999999     999999999999999999652               13568999999999


Q ss_pred             cccC
Q 042478          587 KAMN  590 (954)
Q Consensus       587 ~Al~  590 (954)
                      +|++
T Consensus       307 ~A~~  310 (327)
T 2x8j_A          307 LVER  310 (327)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9987

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*

Probab=100.00  E-value=6e-45  Score=404.92  Aligned_cols=274  Identities=28%  Similarity=0.325  Sum_probs=215.9

Q ss_pred             ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478          129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS  208 (954)
Q Consensus       129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G  208 (954)
                      +..+|..+.+|+||+|||||||||++||+|.++...              +.+|.....        .......+.+|||
T Consensus        15 ~~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~~~~--------------~~~~~~~~~--------~~~~~~~d~~gHG   72 (310)
T 2ixt_A           15 NNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNNVEQ--------------CKDFTGATT--------PINNSCTDRNGHG   72 (310)
T ss_dssp             TCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTTEEE--------------EEESSSSSS--------CEETCCCCSSSHH
T ss_pred             chhhhhccCCCCCcEEEEEecCCCCCCHHHhhcccc--------------cccccCCCC--------CCCCCCCCCCCCH
Confidence            568999999999999999999999999999753211              111110000        0001112223899


Q ss_pred             hhhcccccccc-------ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCc-----cEEEecccCCCCCCCccC
Q 042478          209 TNTDEGLAAGL-------ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGV-----DVLSVSIGNEIPLFSYID  275 (954)
Q Consensus       209 Ta~v~G~a~G~-------~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgv-----dVINlSlG~~~~~~~~~~  275 (954)
                      | |++|++++.       +.||||+|+|+.+|++++.+ ++.+++++||+||+++++     +|||||||...    . .
T Consensus        73 T-~vAgiia~~~~~n~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~Vin~S~G~~~----~-~  146 (310)
T 2ixt_A           73 T-HVAGTALADGGSDQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA----N-N  146 (310)
T ss_dssp             H-HHHHHHHCBCCTTSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEECCCBSS----C-C
T ss_pred             H-HHHHHHhccCCCCCCceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhhccCCCeEEEEcCCCCC----C-C
Confidence            9 999987654       58999999999999998776 688899999999999988     99999999974    1 2


Q ss_pred             cccHHHHHHHHHHHCCCEEEEeCCCCCCCC--CccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCce
Q 042478          276 QRDSIAIGSFHAIAKGITVVSSAGNDGPVA--QTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGF  353 (954)
Q Consensus       276 ~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~--~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~  353 (954)
                        ..+..++.+|.++|++||+||||+|...  ...++..|++|+|||++...                            
T Consensus       147 --~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~----------------------------  196 (310)
T 2ixt_A          147 --SLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ----------------------------  196 (310)
T ss_dssp             --HHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE----------------------------
T ss_pred             --HHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc----------------------------
Confidence              6788889999999999999999999763  44567789999999854110                            


Q ss_pred             eeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEE
Q 042478          354 TGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIK  433 (954)
Q Consensus       354 ~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~  433 (954)
                                                                                                      
T Consensus       197 --------------------------------------------------------------------------------  196 (310)
T 2ixt_A          197 --------------------------------------------------------------------------------  196 (310)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eehhhHHHHHHHHhhcCCCccccCCCceeecccCCC--cccccCCCCCCCCC----CCCcCCeEEecCCceEecCCCCCC
Q 042478          434 VNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSP--RVASFSSRGPNSMS----PAVLKPDIVAPGVDILSAYPPIGS  507 (954)
Q Consensus       434 i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~--~~a~FSS~GP~~~~----~~~lKPDI~APG~~I~sa~~~~~~  507 (954)
                                                       ..+  .++.||++||....    ..+.||||+|||++|+++++.   
T Consensus       197 ---------------------------------~~g~~~~~~~S~~G~~~~~g~~~~~~~~~di~ApG~~i~s~~~~---  240 (310)
T 2ixt_A          197 ---------------------------------QNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYN---  240 (310)
T ss_dssp             ---------------------------------ETTEEEECTTSCCCCTTTTTSSSCCTTCCCEEEECSSEEEECTT---
T ss_pred             ---------------------------------cCCCeeeccccCCCCccCCccccccCCCeeEECCCCCEeeecCC---
Confidence                                             001  46789999995321    123599999999999999986   


Q ss_pred             CCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCc
Q 042478          508 KDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNP  585 (954)
Q Consensus       508 ~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~  585 (954)
                         +.|..++|||||||||||++|||+|++|+|++.+||++|++||++.+..+.      +......++.||+|++|+
T Consensus       241 ---~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~------~~a~~g~d~~~G~G~~~v  309 (310)
T 2ixt_A          241 ---GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGG------YGAAIGDDYASGFGFARV  309 (310)
T ss_dssp             ---SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBS------TTCCSSSBTTTBTCBCCC
T ss_pred             ---CCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCC------cccccCCccccccceeec
Confidence               789999999999999999999999999999999999999999998764331      123456778999999986

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E

Probab=100.00  E-value=5.3e-45  Score=399.07  Aligned_cols=249  Identities=32%  Similarity=0.410  Sum_probs=209.1

Q ss_pred             ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCC---CCCC
Q 042478          129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGI---MDMI  205 (954)
Q Consensus       129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~---~~~~  205 (954)
                      +..+|+.+ +|+||+|||||||||++||+|.++..                             ..++|.++.   .+.+
T Consensus        20 ~~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~~~-----------------------------~~~~~~~~~~~~~d~~   69 (279)
T 1thm_A           20 APQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGKVV-----------------------------GGWDFVDNDSTPQNGN   69 (279)
T ss_dssp             HHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTTEE-----------------------------EEEETTTTBSCCCCSS
T ss_pred             hHHHHhcC-CCCCCEEEEEccCCCCCCcchhcCcc-----------------------------ccccccCCCCCCCCCC
Confidence            66889887 79999999999999999999974311                             112222111   1223


Q ss_pred             Cchhhhcccccccc------ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCccc
Q 042478          206 NASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRD  278 (954)
Q Consensus       206 G~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d  278 (954)
                      |||| |++|++++.      +.||||+|+|+.+|+++..+ ++.+++++||+||+++|++|||||||...     ..  +
T Consensus        70 gHGT-~vAgiia~~~~n~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~-----~~--~  141 (279)
T 1thm_A           70 GHGT-HCAGIAAAVTNNSTGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV-----GN--S  141 (279)
T ss_dssp             SHHH-HHHHHHHCCCSSSSSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS-----CC--H
T ss_pred             CcHH-HHHHHHhCccCCCCccEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHHCCCCEEEEecCCCC-----CC--H
Confidence            8999 999987764      57999999999999998766 77889999999999999999999999874     12  6


Q ss_pred             HHHHHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeee
Q 042478          279 SIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTY  358 (954)
Q Consensus       279 ~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~  358 (954)
                      .+..++.+|.++|+++|+||||+|.....+++..|++|+|||++.                                   
T Consensus       142 ~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~-----------------------------------  186 (279)
T 1thm_A          142 GLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ-----------------------------------  186 (279)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT-----------------------------------
T ss_pred             HHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCC-----------------------------------
Confidence            788899999999999999999999877778888899999998531                                   


Q ss_pred             ccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhh
Q 042478          359 SERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEV  438 (954)
Q Consensus       359 ~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~  438 (954)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (279)
T 1thm_A          187 --------------------------------------------------------------------------------  186 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecC
Q 042478          439 GTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSG  518 (954)
Q Consensus       439 g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SG  518 (954)
                                                   .+.++.||++||.+        ||+|||++|+++++.      +.|..++|
T Consensus       187 -----------------------------~~~~~~fS~~G~~~--------dv~APG~~i~s~~~~------~~~~~~sG  223 (279)
T 1thm_A          187 -----------------------------NDNKSSFSTYGSWV--------DVAAPGSSIYSTYPT------STYASLSG  223 (279)
T ss_dssp             -----------------------------TSCBCTTCCCCTTC--------CEEEECSSEEEEETT------TEEEEECS
T ss_pred             -----------------------------CCCcCCcCCCCCce--------EEEEcCCCeEEEeCC------CCEEEccc
Confidence                                         13467899999865        999999999999986      78999999


Q ss_pred             CCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478          519 TSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN  590 (954)
Q Consensus       519 TSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~  590 (954)
                      ||||||||||++|||  ++|.+++++||++|++||++++..+               ..||+|+||+.+|++
T Consensus       224 TS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~~---------------~~~G~G~vn~~~A~~  278 (279)
T 1thm_A          224 TSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGTG---------------TYWAKGRVNAYKAVQ  278 (279)
T ss_dssp             HHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTBT---------------TTBSSEECCHHHHHH
T ss_pred             HHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCCC---------------ccccCCeeCHHHHhc
Confidence            999999999999999  5799999999999999999764221               468999999999985

>3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A

Probab=100.00  E-value=1.9e-45  Score=403.55  Aligned_cols=257  Identities=25%  Similarity=0.286  Sum_probs=204.8

Q ss_pred             CCCC-CceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCC--C--CCCchhh
Q 042478          136 SNMG-EGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIM--D--MINASTN  210 (954)
Q Consensus       136 ~~~G-~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~--~--~~G~GTa  210 (954)
                      ..+| +||+|||||||||++||+|.+..+.         +     .++              +..+..  +  .+|||| 
T Consensus         3 ~l~G~~gV~VaViDtGid~~Hpdl~g~~~~---------~-----~~~--------------~~~~~~~~d~~~~gHGT-   53 (282)
T 3zxy_A            3 SLKGDHNIRVAILDGPVDIAHPCFQGADLT---------V-----LPT--------------LAPTAARSDGFMSAHGT-   53 (282)
T ss_dssp             TCCCCTTSEEEEEESCCCTTSGGGTTCEEE---------E-----CCC--------------SSCCCCCTTCHHHHHHH-
T ss_pred             CCcCCCCCEEEEEcCCCCCCChhHCCCeee---------c-----CcC--------------CCCCCCCCCCCCCCccc-
Confidence            3578 7999999999999999999754321         0     000              000000  0  117999 


Q ss_pred             hcccccccc----ceeccCCCcEEEEEEecCCC--CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHH
Q 042478          211 TDEGLAAGL----ARGGAPLAHLAIYKACWDIG--CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGS  284 (954)
Q Consensus       211 ~v~G~a~G~----~~GvAP~A~L~~yKv~~~~g--~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~  284 (954)
                      |++|+++|.    +.||||+|+|+.+|++.+.+  .+..++++||+||+++|++|||||||...... ..+  ..+..++
T Consensus        54 ~VAGiiag~~~~~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~-~~~--~~~~~ai  130 (282)
T 3zxy_A           54 HVASIIFGQPETSVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTDFG-EAD--GWLENAV  130 (282)
T ss_dssp             HHHHHHHCCTTSSSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSS-CCC--HHHHHHH
T ss_pred             ceeehhhccCCceeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccccccc-ccc--HHHHHHH
Confidence            999987664    68999999999999986543  67788999999999999999999999764111 223  6678889


Q ss_pred             HHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeecccccc
Q 042478          285 FHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAF  364 (954)
Q Consensus       285 ~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~  364 (954)
                      ..+.++|+++|+||||+|......+...|++|+|||++.                                         
T Consensus       131 ~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~-----------------------------------------  169 (282)
T 3zxy_A          131 SLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDD-----------------------------------------  169 (282)
T ss_dssp             HHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECT-----------------------------------------
T ss_pred             HHHhhcCceEEEecccCCCccccCccccceeEEEEEEcC-----------------------------------------
Confidence            999999999999999999887778888899999998531                                         


Q ss_pred             CCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHH
Q 042478          365 DPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILS  444 (954)
Q Consensus       365 ~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~  444 (954)
                                                                                                      
T Consensus       170 --------------------------------------------------------------------------------  169 (282)
T 3zxy_A          170 --------------------------------------------------------------------------------  169 (282)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhH
Q 042478          445 YIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCP  524 (954)
Q Consensus       445 ~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP  524 (954)
                                             .+.++.||+||+..     .||||+|||++|+++++.      +.|..++|||||||
T Consensus       170 -----------------------~~~~~~~S~~~~~~-----~~~di~ApG~~i~s~~~~------~~~~~~sGTS~AaP  215 (282)
T 3zxy_A          170 -----------------------HGHPLDFSNWGSTY-----EQQGILAPGEDILGAKPG------GGTERLSGTAFATP  215 (282)
T ss_dssp             -----------------------TSCBCSSSCCCHHH-----HHHEEEEECSSEEEECTT------SCEEEECSHHHHHH
T ss_pred             -----------------------CCccccccCCCCCc-----cccceeccCcceeeecCC------CceeecCCCcccch
Confidence                                   13467899998753     688999999999999987      78999999999999


Q ss_pred             HHHHHHHHHHhhC----CCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478          525 HVAGIAALIKSLH----RDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN  590 (954)
Q Consensus       525 ~VAG~aALl~q~~----P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~  590 (954)
                      ||||++|||+|++    |.++|++||++|++||++++..           .+.....||+|+||+.+|++
T Consensus       216 ~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~-----------~~~~~~~~G~G~ln~~~A~~  274 (282)
T 3zxy_A          216 IVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDD-----------APEQARRCLAGRLNVSGAFT  274 (282)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC------------------CGGGTTCBCCHHHHHH
T ss_pred             HHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCC-----------CCCccCceeeeEeCHHHHHH
Confidence            9999999999874    7899999999999999965421           23345679999999999986

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A

Probab=100.00  E-value=6.5e-45  Score=406.19  Aligned_cols=259  Identities=29%  Similarity=0.391  Sum_probs=211.2

Q ss_pred             ccccccCCCCCC--ceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCC
Q 042478          129 SKNLSTESNMGE--GTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMIN  206 (954)
Q Consensus       129 ~~~~w~~~~~G~--GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G  206 (954)
                      +..+|..+ +|+  ||+|||||||||++||+|.++...         +     .+|.    ..+. +..  ..+..+.+|
T Consensus        17 ~~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~~~~---------~-----~~~~----~~~~-~~~--~~~~~d~~g   74 (320)
T 2z30_A           17 APSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAANIAW---------C-----VSTL----RGKV-STK--LRDCADQNG   74 (320)
T ss_dssp             CGGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGGEEE---------E-----EECG----GGCC-BCC--HHHHBCSSS
T ss_pred             hHHHHHhc-CCCcCCeEEEEECCCCCCCChhHhccccc---------C-----cccc----CCcc-CCC--CCCCCCCCC
Confidence            67899988 999  999999999999999999753211         0     0110    0000 000  000122338


Q ss_pred             chhhhcccccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcC--------------------CccEE
Q 042478          207 ASTNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHD--------------------GVDVL  260 (954)
Q Consensus       207 ~GTa~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~d--------------------gvdVI  260 (954)
                      ||| |++|+++|.     +.||||+|+|+.+|+++..| +..+++++||+||+++                    +++||
T Consensus        75 HGT-~vAgiia~~~n~~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vi  153 (320)
T 2z30_A           75 HGT-HVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVI  153 (320)
T ss_dssp             HHH-HHHHHHHCCSSSBSCCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSCTTSSSCCTTCTTSCCCSEE
T ss_pred             CHH-HHHHHHHcccCCCceEeeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHhCcccccccccccccccccccCCceEE
Confidence            999 999987764     58999999999999998776 7788999999999987                    99999


Q ss_pred             EecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEe
Q 042478          261 SVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLW  340 (954)
Q Consensus       261 NlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~  340 (954)
                      |||||...    . .  ..+..++.+|.++|++||+||||+|.....+++..|++|+|||++.                 
T Consensus       154 n~S~G~~~----~-~--~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~-----------------  209 (320)
T 2z30_A          154 SMSLGGPA----D-D--SYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDS-----------------  209 (320)
T ss_dssp             EECEEBSC----C-C--HHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT-----------------
T ss_pred             EecCCCCC----C-C--HHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEeeCC-----------------
Confidence            99999874    1 2  5678888899999999999999999887778888999999998531                 


Q ss_pred             eeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCC
Q 042478          341 GQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHT  420 (954)
Q Consensus       341 g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~  420 (954)
                                                                                                      
T Consensus       210 --------------------------------------------------------------------------------  209 (320)
T 2z30_A          210 --------------------------------------------------------------------------------  209 (320)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEe
Q 042478          421 DGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILS  500 (954)
Q Consensus       421 ~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~s  500 (954)
                                                                     .+.++.||++||          +|+|||++|++
T Consensus       210 -----------------------------------------------~~~~~~~S~~g~----------~v~APG~~i~s  232 (320)
T 2z30_A          210 -----------------------------------------------NDNIASFSNRQP----------EVSAPGVDILS  232 (320)
T ss_dssp             -----------------------------------------------TSCBCTTSCSSC----------SEEEECSSEEE
T ss_pred             -----------------------------------------------CCCcCcccCCCC----------CEEeCCCCeEE
Confidence                                                           134678999997          78999999999


Q ss_pred             cCCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhC-------------CCCCHHHHHHHHHhccccCCCCCccccccC
Q 042478          501 AYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH-------------RDWSPAAIRSALVTTASQTGTDGMNIFEEG  567 (954)
Q Consensus       501 a~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~-------------P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~  567 (954)
                      +++.      +.|..++|||||||||||++|||+|++             |+|++.+||++|++||+++...        
T Consensus       233 ~~~~------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~~ta~~~~~~--------  298 (320)
T 2z30_A          233 TYPD------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPT--------  298 (320)
T ss_dssp             EETT------TEEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHHHHHSBCCSSS--------
T ss_pred             eccC------CCeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHHHhhCccCCCC--------
Confidence            9986      789999999999999999999999998             9999999999999999976432        


Q ss_pred             CCCCCCCCCCCCCCccCcccccC
Q 042478          568 STRKEADPFDIGGGHVNPNKAMN  590 (954)
Q Consensus       568 ~~~~~~~~~~~GaG~vn~~~Al~  590 (954)
                           ..+..||+|+||+.+|++
T Consensus       299 -----g~~~~~G~G~vd~~~A~~  316 (320)
T 2z30_A          299 -----GWDADYGYGVVRAALAVQ  316 (320)
T ss_dssp             -----SSBTTTBTCBCCHHHHHH
T ss_pred             -----CCCCCcCCceeCHHHHHH
Confidence                 235679999999999986

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}

Probab=100.00  E-value=6.8e-44  Score=444.13  Aligned_cols=347  Identities=21%  Similarity=0.241  Sum_probs=241.7

Q ss_pred             CCchhhhcccccccc-----ceeccCCCcEEEEEEecCCC---CChHHHHHHHHHHhc-----CCccEEEecccCCCCCC
Q 042478          205 INASTNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG---CTDADVLKAFDKAIH-----DGVDVLSVSIGNEIPLF  271 (954)
Q Consensus       205 ~G~GTa~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g---~~~~dil~Aid~Ai~-----dgvdVINlSlG~~~~~~  271 (954)
                      +|||| |++|+++|.     +.||||+|+|+.+|+++..+   ++..+++++|.+|++     .|+||||||||.... .
T Consensus       270 ~GHGT-hVAGIIAa~~N~~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVINmS~G~~~~-~  347 (1354)
T 3lxu_X          270 SPHGT-HVSSIASGNHSSRDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHAN-W  347 (1354)
T ss_dssp             CHHHH-HHHHHHCCCCSSSSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEEEECCCCCCS-C
T ss_pred             CCcHH-HHHHHHhcCCCCCCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEEEcCCccCCC-C
Confidence            37999 999988876     89999999999999997653   356778888888877     799999999999751 1


Q ss_pred             CccCcccHHHHHHHHHH-HCCCEEEEeCCCCCCCCCcc--cc--CCCceEEEcccccCCCccceeecCCCeEEeeeeeec
Q 042478          272 SYIDQRDSIAIGSFHAI-AKGITVVSSAGNDGPVAQTI--VN--TAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDI  346 (954)
Q Consensus       272 ~~~~~~d~~~~a~~~A~-~~Gi~VV~AAGN~G~~~~t~--~~--~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~  346 (954)
                       ...  +.+..++.+|. ++|++||+||||+|++..++  ++  ..+++|+|||++.+.........             
T Consensus       348 -~~~--~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~-------------  411 (1354)
T 3lxu_X          348 -SNS--GRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM-------------  411 (1354)
T ss_dssp             -SSC--CHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC-----------------
T ss_pred             -Ccc--HHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc-------------
Confidence             122  67788888886 89999999999999875544  34  37999999997643211000000             


Q ss_pred             cCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCC
Q 042478          347 GKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSC  426 (954)
Q Consensus       347 ~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~  426 (954)
                                                                                                      
T Consensus       412 --------------------------------------------------------------------------------  411 (1354)
T 3lxu_X          412 --------------------------------------------------------------------------------  411 (1354)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCC
Q 042478          427 NLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIG  506 (954)
Q Consensus       427 ~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~  506 (954)
                                                           .....+.++.||||||+.  ++.+||||+|||++|+++.... 
T Consensus       412 -------------------------------------~~~~~g~~asFSS~GPt~--dg~~KpDIaAPG~~I~St~~~~-  451 (1354)
T 3lxu_X          412 -------------------------------------REKLPGNVYTWTSRDPCI--DGGQGVTVCAPGGAIASVPQFT-  451 (1354)
T ss_dssp             -------------------------------------------CCCCCCCCSCCS--SSSCCEEEEEEC-----------
T ss_pred             -------------------------------------ccCCCCccccccCCCCCc--cCCCcceEEecCceEEEeecCC-
Confidence                                                 001225689999999997  7899999999999999986532 


Q ss_pred             CCCCCceEeecCCCchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCc
Q 042478          507 SKDIQGYALLSGTSMSCPHVAGIAALIKS----LHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGH  582 (954)
Q Consensus       507 ~~~~~~y~~~SGTSMAaP~VAG~aALl~q----~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~  582 (954)
                         .+.|..++|||||||||||++|||++    .+|+|+|++||++|++||++.+.              .+++.||+|+
T Consensus       452 ---~~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~--------------~~~~~~G~Gl  514 (1354)
T 3lxu_X          452 ---MSKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY--------------VDPFAQGHGL  514 (1354)
T ss_dssp             --------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT--------------SCTTTSSSSB
T ss_pred             ---CCceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC--------------CCcccccCCE
Confidence               26799999999999999999999986    89999999999999999996532              3456899999


Q ss_pred             cCcccccCCCccccCCchhHHHhhhcCCCCcc-cceecccccccccCCCcCccCCCCCeeecccCCCCceEEEEEEEEec
Q 042478          583 VNPNKAMNPGLVYDITVEDYIQFLCFMGHNDA-SISRLTKSKINCLKNNHLALDLNLPSITIPNLHNNETVTVTRKVTNV  661 (954)
Q Consensus       583 vn~~~Al~pglvyd~~~~dy~~flc~~g~~~~-~i~~~~~~~~~c~~~~~~~~~lN~psi~~~~~~~~~~~tv~rtvtNv  661 (954)
                      ||+.+|++..+.|+..+.+|+.|+|..++... .|.                         +.+.......+++.+|+.+
T Consensus       515 LDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~rgIy-------------------------lR~~~~~~~~~~tv~V~p~  569 (1354)
T 3lxu_X          515 LNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIH-------------------------LRQGVQRNSIDYNVYIEPI  569 (1354)
T ss_dssp             CCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBSSEE-------------------------ECSSCCCSCEEEEEEEEEE
T ss_pred             eCHHHHHHHHHhcCCCCccceEEEEEecCCCCCceE-------------------------EeccccCCceEEEEEEeee
Confidence            99999999999999999999999999874322 111                         1000001222333333221


Q ss_pred             C------CC--CceeE--EEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCCccCCCCCCCceEEEEEEECC-----
Q 042478          662 G------QI--NSAYE--ALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTDD-----  726 (954)
Q Consensus       662 g------~~--~~tY~--~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~~~~~G~l~w~~~-----  726 (954)
                      =      +.  ...|.  +.+...+  .+...|..|.+  .++.++|.|+++++.     ...+..++.|...|-     
T Consensus       570 f~~~~~~~~~~~i~f~~~l~L~~t~--~wv~~p~~l~l--~~~~r~~~v~vDp~~-----L~~G~h~~~v~~~D~~~~~~  640 (1354)
T 3lxu_X          570 FYNDKEADPKDKFNFNVRLNLIASQ--PWVQCGAFLDL--SYGTRSIAVRVDPTG-----LQPGVHSAVIRAYDTDCVQK  640 (1354)
T ss_dssp             ESSCSCSSSTTCSCCCCEEEEEESS--TTEEECSCEEC--TTSCEEEEEEECGGG-----CCSEEEEEEEEEEESSCTTS
T ss_pred             ecCcccCChhhccceEEEEEEecCC--Cceecccceee--cCCCceEEEEECCCC-----CCCcceeEEEEEEEcCCccc
Confidence            1      11  22222  2222222  23334888877  578889999999887     455788999987763     


Q ss_pred             cceEEcCccccccc
Q 042478          727 SVDSRFNGFLSIHF  740 (954)
Q Consensus       727 ~~~vr~P~~v~~~~  740 (954)
                      ....|+|+.|....
T Consensus       641 gp~f~ipvTv~~P~  654 (1354)
T 3lxu_X          641 GSLFEIPVTVVQPH  654 (1354)
T ss_dssp             CCSEEEEEEEEECB
T ss_pred             CceEEeeEEEEeee
Confidence            57788888875544

>4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596}

Probab=100.00  E-value=4e-45  Score=405.64  Aligned_cols=268  Identities=24%  Similarity=0.305  Sum_probs=213.3

Q ss_pred             ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478          129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS  208 (954)
Q Consensus       129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G  208 (954)
                      .+.+|+.+..++||+|||||||||++||+|.+..+.  ..           ..|.    +     ..  .+...+.+|||
T Consensus        10 ~~~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~~~~--~~-----------~~~~----~-----~~--~~~~~d~~gHG   65 (306)
T 4h6w_A           10 LKKLWSETRGDPKICVAVLDGIVDQNHPCFIGADLT--RL-----------PSLV----S-----GE--ANANGSMSTHG   65 (306)
T ss_dssp             HHHHHHHCSCCTTCEEEEESSCCCTTSGGGTTCEEE--EC-----------C---------------------CCCCHHH
T ss_pred             HHHHHhhhCCCCCCEEEEEcCCCCCCChhHcCCccc--CC-----------Cccc----C-----CC--CCCCCCCCCch
Confidence            347899988789999999999999999999765322  00           0000    0     00  00011223799


Q ss_pred             hhhcccccccc----ceeccCCCcEEEEEEecCCC--CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHH
Q 042478          209 TNTDEGLAAGL----ARGGAPLAHLAIYKACWDIG--CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAI  282 (954)
Q Consensus       209 Ta~v~G~a~G~----~~GvAP~A~L~~yKv~~~~g--~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~  282 (954)
                      | ||+|+++|.    +.||||+|+|+.+|++.+.+  +...++++||+||+++|++|||+|||.....+ ...  ..+..
T Consensus        66 T-hVAGiiag~~~~~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~s~g~~~~~~-~~~--~~~~~  141 (306)
T 4h6w_A           66 T-HVASIIFGQHDSPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQLTDAG-EAD--TWLEK  141 (306)
T ss_dssp             H-HHHHHHHCCTTSSSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSS-CCC--HHHHH
T ss_pred             H-HHHHHHHccccCCcceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeeccccccccCC-Ccc--HHHHH
Confidence            9 999987664    68999999999999996543  67788999999999999999999999754222 333  66888


Q ss_pred             HHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeecccc
Q 042478          283 GSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERI  362 (954)
Q Consensus       283 a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~  362 (954)
                      ++..+.++|++||+||||+|......++..+++|+|||++.+                                      
T Consensus       142 ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~--------------------------------------  183 (306)
T 4h6w_A          142 AIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ--------------------------------------  183 (306)
T ss_dssp             HHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT--------------------------------------
T ss_pred             HHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC--------------------------------------
Confidence            899999999999999999998877777888999999985321                                      


Q ss_pred             ccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHH
Q 042478          363 AFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQI  442 (954)
Q Consensus       363 ~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l  442 (954)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (306)
T 4h6w_A          184 --------------------------------------------------------------------------------  183 (306)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCch
Q 042478          443 LSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMS  522 (954)
Q Consensus       443 ~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMA  522 (954)
                                                +.+++||++|+..     .||||+|||++|+++++.      +.|..++|||||
T Consensus       184 --------------------------~~~~~~s~~g~~~-----~~~di~APG~~i~s~~~~------~~~~~~sGTS~A  226 (306)
T 4h6w_A          184 --------------------------GKPVDFSNWGDAY-----QKQGILAPGKDILGAKPN------GGTIRLSGTSFA  226 (306)
T ss_dssp             --------------------------SCBCSSSCBCHHH-----HHHEEEEECSSEEEECTT------SCEEEECSHHHH
T ss_pred             --------------------------CCccccccccCCc-----CcceeecCCcCcccccCC------CceeccCCCcch
Confidence                                      3356789998653     588999999999999987      789999999999


Q ss_pred             hHHHHHHHHHHHhh----CCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478          523 CPHVAGIAALIKSL----HRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN  590 (954)
Q Consensus       523 aP~VAG~aALl~q~----~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~  590 (954)
                      ||||||++|||+++    +|.|+|++||++|++||++++..+           ......||+|+||+.+|++
T Consensus       227 aP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~-----------~~~~~~~G~G~ln~~~Av~  287 (306)
T 4h6w_A          227 TPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD-----------TDDQSRCLMGKLNILDAIE  287 (306)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT-----------CSCGGGGTTCBCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC-----------CCCCCCcceeecCHHHHHH
Confidence            99999999999864    699999999999999999765332           2234579999999999987

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}

Probab=100.00  E-value=1.2e-44  Score=408.72  Aligned_cols=268  Identities=19%  Similarity=0.140  Sum_probs=209.6

Q ss_pred             ccccccCCCCCC--ceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceecccc-CCCCCC
Q 042478          129 SKNLSTESNMGE--GTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIK-GIMDMI  205 (954)
Q Consensus       129 ~~~~w~~~~~G~--GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~-~~~~~~  205 (954)
                      +..+|.. .+|+  ||+||||||||| +||+|.++...         +.     +|...        +..|.. ...+.+
T Consensus        32 ~~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~~~~---------~~-----~~~~~--------~~~~~~~~~~d~~   87 (347)
T 2iy9_A           32 LTETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDSEFA---------KF-----SFTQD--------GSPFPVKKSEALY   87 (347)
T ss_dssp             CCHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTCEEE---------EE-----ECBTT--------CCSSCCSSSHHHH
T ss_pred             hHHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcCccc---------CC-----cccCC--------CCCCCCCCCCCCC
Confidence            5678988 8999  999999999999 99999754211         10     11000        000000 001112


Q ss_pred             Cchhhhcccccccc--ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhcC------CccEEEecccCCCCCCCccCcc
Q 042478          206 NASTNTDEGLAAGL--ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHD------GVDVLSVSIGNEIPLFSYIDQR  277 (954)
Q Consensus       206 G~GTa~v~G~a~G~--~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~d------gvdVINlSlG~~~~~~~~~~~~  277 (954)
                      |||| |++|++++.  +.||||+|+|+.+|++++.+..  ++++||+||+++      |++|||||||.... . ...  
T Consensus        88 gHGT-~vAgiia~~~g~~GvAp~a~l~~~~v~~~~~~~--~~~~ai~~a~~~~~~~~~~~~Vin~S~G~~~~-~-~~~--  160 (347)
T 2iy9_A           88 IHGT-AMASLIASRYGIYGVYPHALISSRRVIPDGVQD--SWIRAIESIMSNVFLAPGEEKIINISGGQKGV-A-SAS--  160 (347)
T ss_dssp             HHHH-HHHHHHHCSSSSCCSSTTCEEEEEECCSSBCTT--HHHHHHHHHHTCTTSCTTEEEEEEESSCBCCC---CCH--
T ss_pred             CcHH-HHHHHHhcccCCcccCCCCEEEEEEEecCCCHH--HHHHHHHHHHhhhhcccCCceEEEeccccCCC-C-CcC--
Confidence            7999 999988775  7999999999999999765433  999999999999      99999999998641 1 233  


Q ss_pred             cHHHHHHHHHHHCCCEEEEeCCCCCCC-------CCccccCCC----------ceEEEccccc--CCCccceeecCCCeE
Q 042478          278 DSIAIGSFHAIAKGITVVSSAGNDGPV-------AQTIVNTAP----------WIITVGATTI--DRAFPTAITLGNHQV  338 (954)
Q Consensus       278 d~~~~a~~~A~~~Gi~VV~AAGN~G~~-------~~t~~~~ap----------~vitVgAs~~--d~~~~~~~~lg~~~~  338 (954)
                      +.+..++..|.++|++||+||||+|.+       ...+++..|          ++|+|||++.  +...           
T Consensus       161 ~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~Vga~~~~~~g~~-----------  229 (347)
T 2iy9_A          161 VWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGET-----------  229 (347)
T ss_dssp             HHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEEEEECCCCTTSC-----------
T ss_pred             HHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEEEEcccCCCCce-----------
Confidence            678889999999999999999999975       345566777          9999998653  1100           


Q ss_pred             EeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEec
Q 042478          339 LWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQF  418 (954)
Q Consensus       339 ~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~  418 (954)
                                                                                                      
T Consensus       230 --------------------------------------------------------------------------------  229 (347)
T 2iy9_A          230 --------------------------------------------------------------------------------  229 (347)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCce
Q 042478          419 HTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDI  498 (954)
Q Consensus       419 ~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I  498 (954)
                                                                    ....+..+.||++||+       ||||+|||++|
T Consensus       230 ----------------------------------------------~~~~~~~~~fS~~G~~-------~~di~APG~~i  256 (347)
T 2iy9_A          230 ----------------------------------------------PVLHGGGITGSRFGNN-------WVDIAAPGQNI  256 (347)
T ss_dssp             ----------------------------------------------CCBCCCSSSCBCBCTT-------TCSEEEECSSE
T ss_pred             ----------------------------------------------ecccCCCCCCCCCCCC-------CCEEEeCCCCe
Confidence                                                          0001345799999995       67999999999


Q ss_pred             EecCCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCC
Q 042478          499 LSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDI  578 (954)
Q Consensus       499 ~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~  578 (954)
                      +++++.      +.|..++|||||||||||++|||+|++|+|++.+||++|++||++.+..+              ...|
T Consensus       257 ~s~~~~------~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~--------------~~~~  316 (347)
T 2iy9_A          257 TFLRPD------AKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLV--------------DKVT  316 (347)
T ss_dssp             EEECTT------SCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECGGGT--------------TTSG
T ss_pred             EeecCC------CCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCCCC--------------Cccc
Confidence            999986      78999999999999999999999999999999999999999999754221              2589


Q ss_pred             CCCccCcccccCC
Q 042478          579 GGGHVNPNKAMNP  591 (954)
Q Consensus       579 GaG~vn~~~Al~p  591 (954)
                      |+|+||+.+|++.
T Consensus       317 G~G~ld~~~A~~~  329 (347)
T 2iy9_A          317 EGRVLNAEKAISM  329 (347)
T ss_dssp             GGEECCHHHHHHH
T ss_pred             cCCEecHHHHHHH
Confidence            9999999999983

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A

Probab=100.00  E-value=7.1e-44  Score=401.41  Aligned_cols=280  Identities=26%  Similarity=0.334  Sum_probs=214.6

Q ss_pred             CccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccc-------cC---CCCC------CCCCCccc
Q 042478          128 SSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQ-------KG---EKFN------SSNCNRKL  191 (954)
Q Consensus       128 ~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~-------~~---~~f~------~~~cn~ki  191 (954)
                      ++..+|+.+++|+||+||||||||| +||+|.++...      .|+-...       .+   +.++      ...|+.  
T Consensus        20 ~~~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~~------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--   90 (340)
T 3lpc_A           20 KADKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLP------GYDFISNSQISLDGDGRDADPFDEGDWFDNWACGG--   90 (340)
T ss_dssp             CHHHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBCC------CEECCCCHHHHCSSSSSBSCCBCCCCCBCTTTTSC--
T ss_pred             CHHHHHHhcCCCCCeEEEEEcCCCC-CChhhhccccc------CccccCCccccccCCCccCCccccccccccccccC--
Confidence            3678999999999999999999998 99999764322      1110000       00   0000      001110  


Q ss_pred             cceeccccCCCCCCCchhhhcccccccc------ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhc----------C
Q 042478          192 IGARWFIKGIMDMINASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIH----------D  255 (954)
Q Consensus       192 iga~~~~~~~~~~~G~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~----------d  255 (954)
                        ...-.....+..|||| |++|+++|.      +.||||+|+|+.+|++...+++.+++++||+||++          .
T Consensus        91 --~~~~~~~~~d~~gHGT-~vAgiia~~~~~~~g~~GvAp~a~l~~~~v~~~~~~~~~~~~~ai~~a~~~~~~~~~~~~~  167 (340)
T 3lpc_A           91 --RPDPRKERSDSSWHGS-HVAGTIAAVTNNRIGVAGVAYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIPENRN  167 (340)
T ss_dssp             --TTCGGGSCBCCCCHHH-HHHHHHHCCCSSSSSCCCTTTTSEEEEEECCBTTBCCHHHHHHHHHHHHTCCCTTSCCCSS
T ss_pred             --CCCcccCCCCCCCCHH-HHHHHHHccCCCCCcceeecCCCEEEEEEEecCCCCcHHHHHHHHHHHhcccccccccccC
Confidence              0000001122238999 999988774      48999999999999998878889999999999998          8


Q ss_pred             CccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCC-ccccCCCceEEEcccccCCCccceeecC
Q 042478          256 GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQ-TIVNTAPWIITVGATTIDRAFPTAITLG  334 (954)
Q Consensus       256 gvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~-t~~~~ap~vitVgAs~~d~~~~~~~~lg  334 (954)
                      +++|||||||...    ...  ..+..++.+|.++|++||+||||+|.... ..++..|++|+|||++.           
T Consensus       168 ~~~Vin~S~G~~~----~~~--~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~-----------  230 (340)
T 3lpc_A          168 PAKVINMSLGSDG----QCS--YNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTS-----------  230 (340)
T ss_dssp             CCSEEEECCCEES----CCC--HHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECT-----------
T ss_pred             CCeEEEeCcCCCC----Ccc--hhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCC-----------
Confidence            9999999999864    223  56788889999999999999999997643 45677899999998531           


Q ss_pred             CCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEE
Q 042478          335 NHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLI  414 (954)
Q Consensus       335 ~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi  414 (954)
                                                                                                      
T Consensus       231 --------------------------------------------------------------------------------  230 (340)
T 3lpc_A          231 --------------------------------------------------------------------------------  230 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEec
Q 042478          415 YAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAP  494 (954)
Q Consensus       415 ~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~AP  494 (954)
                                                                           .+.++.||++||.        |||+||
T Consensus       231 -----------------------------------------------------~~~~~~~S~~g~~--------~di~Ap  249 (340)
T 3lpc_A          231 -----------------------------------------------------RGIRASFSNYGVD--------VDLAAP  249 (340)
T ss_dssp             -----------------------------------------------------TSSBCTTCCBSTT--------CCEEEE
T ss_pred             -----------------------------------------------------CCCcCCCCCCCCC--------ceEEec
Confidence                                                                 1346789999984        599999


Q ss_pred             CCceEecCCCCCC-CCCCceEeecCCCchhHHHHHHHHHHHhh-C---CCCCHHHHHHHHHhccccCCCCCccccccCCC
Q 042478          495 GVDILSAYPPIGS-KDIQGYALLSGTSMSCPHVAGIAALIKSL-H---RDWSPAAIRSALVTTASQTGTDGMNIFEEGST  569 (954)
Q Consensus       495 G~~I~sa~~~~~~-~~~~~y~~~SGTSMAaP~VAG~aALl~q~-~---P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~  569 (954)
                      |++|+++++.... ...+.|..++|||||||||||++|||+|+ +   |.+++++||++|++||++..            
T Consensus       250 G~~i~s~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~------------  317 (340)
T 3lpc_A          250 GQDILSTVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFN------------  317 (340)
T ss_dssp             CSSEEEEEESCSSSCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCS------------
T ss_pred             CCCeecccCCCCcCCCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCC------------
Confidence            9999999876421 11346999999999999999999999998 5   99999999999999999652            


Q ss_pred             CCCCCCCCCCCCccCcccccCC
Q 042478          570 RKEADPFDIGGGHVNPNKAMNP  591 (954)
Q Consensus       570 ~~~~~~~~~GaG~vn~~~Al~p  591 (954)
                        ......||+|+||+.+|++.
T Consensus       318 --~~~~~~~G~G~vd~~~Av~~  337 (340)
T 3lpc_A          318 --GRLDRALGSGIVDAEAAVNS  337 (340)
T ss_dssp             --SCCSSCCCSSBCCHHHHHHH
T ss_pred             --CCCCCCcccceecHHHHHHH
Confidence              12356899999999999874

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A

Probab=100.00  E-value=1.9e-43  Score=410.61  Aligned_cols=281  Identities=28%  Similarity=0.324  Sum_probs=218.1

Q ss_pred             cccccc-CCCCCCceEEEEEeCCCCC------CCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccC-
Q 042478          129 SKNLST-ESNMGEGTIIGIIDTGVWP------ESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKG-  200 (954)
Q Consensus       129 ~~~~w~-~~~~G~GVvVgVIDTGId~------~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~-  200 (954)
                      ++.+|. .+++|+||+|||||||||+      .||+|.+..                             +..++|.+. 
T Consensus        10 ~~~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~i-----------------------------~~~~~~~~~~   60 (434)
T 1wmd_A           10 ADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGKI-----------------------------TALYALGRTN   60 (434)
T ss_dssp             HHHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTCE-----------------------------EEEEETTTTT
T ss_pred             chhhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCCE-----------------------------eeeccccCCC
Confidence            457897 7999999999999999999      799986431                             111222221 


Q ss_pred             -CCCCCCchhhhcccccccc---ceeccCCCcEEEEEEecCCCC---ChHHHHHHHHHHhcCCccEEEecccCCCCCCCc
Q 042478          201 -IMDMINASTNTDEGLAAGL---ARGGAPLAHLAIYKACWDIGC---TDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSY  273 (954)
Q Consensus       201 -~~~~~G~GTa~v~G~a~G~---~~GvAP~A~L~~yKv~~~~g~---~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~  273 (954)
                       ..+.+|||| |++|+++|.   +.||||+|+|+.+|+++..|.   ..+++.++|++|+++|++|||||||...... |
T Consensus        61 ~~~d~~gHGT-~VAgiiag~g~~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~-~  138 (434)
T 1wmd_A           61 NANDTNGHGT-HVAGSVLGNGSTNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGA-Y  138 (434)
T ss_dssp             CCCCSSSHHH-HHHHHHHCCSSSSCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBCCTTC-C
T ss_pred             CCCCCCCcHH-HHHHHHHcCCCCceeeCCCCEEEEEEeecCCCccccccHHHHHHHHHHHhcCCeEEEecCCCCcCCc-C
Confidence             112238999 999987664   489999999999999987663   4578999999999999999999999874111 2


Q ss_pred             cCcccHHHHHHHHH-HHCCCEEEEeCCCCCCCCC--ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcC
Q 042478          274 IDQRDSIAIGSFHA-IAKGITVVSSAGNDGPVAQ--TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVS  350 (954)
Q Consensus       274 ~~~~d~~~~a~~~A-~~~Gi~VV~AAGN~G~~~~--t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~  350 (954)
                          ++...+++++ .++|+++|+||||+|....  ..++.++++|+|||++..+...                      
T Consensus       139 ----~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~----------------------  192 (434)
T 1wmd_A          139 ----TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF----------------------  192 (434)
T ss_dssp             ----CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG----------------------
T ss_pred             ----CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCccc----------------------
Confidence                4556667666 5899999999999998654  3456789999999976432100                      


Q ss_pred             CceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccc
Q 042478          351 HGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIP  430 (954)
Q Consensus       351 ~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip  430 (954)
                                                                 +.                                   
T Consensus       193 -------------------------------------------~~-----------------------------------  194 (434)
T 1wmd_A          193 -------------------------------------------GS-----------------------------------  194 (434)
T ss_dssp             -------------------------------------------CG-----------------------------------
T ss_pred             -------------------------------------------Cc-----------------------------------
Confidence                                                       00                                   


Q ss_pred             eEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCC--
Q 042478          431 CIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSK--  508 (954)
Q Consensus       431 ~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~--  508 (954)
                                                       .....+.++.||||||+.  ++++||||+|||++|+++++.....  
T Consensus       195 ---------------------------------~~~~~~~~a~fS~~G~~~--~g~~kpdi~ApG~~i~s~~~~~~~~~~  239 (434)
T 1wmd_A          195 ---------------------------------YADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSS  239 (434)
T ss_dssp             ---------------------------------GGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCCGGG
T ss_pred             ---------------------------------ccCCCCccccccCCCCCC--CCCCCceEEcCCCCeEecCCCCCCCcc
Confidence                                             001235689999999997  8999999999999999998643210  


Q ss_pred             ----CCCceEeecCCCchhHHHHHHHHHHHhhCCCC-----CHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCC
Q 042478          509 ----DIQGYALLSGTSMSCPHVAGIAALIKSLHRDW-----SPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIG  579 (954)
Q Consensus       509 ----~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~-----sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~G  579 (954)
                          ..+.|..++|||||||||||++|||+|++|++     ++++||++|++||+++.             ...+...||
T Consensus       240 ~~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~-------------~~~~~~~~G  306 (434)
T 1wmd_A          240 FWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG-------------LGYPNGNQG  306 (434)
T ss_dssp             SSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCS-------------SCSSCTTTT
T ss_pred             cccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccC-------------CCCCCccCC
Confidence                13689999999999999999999999998876     89999999999998642             123567899


Q ss_pred             CCccCcccccCCC
Q 042478          580 GGHVNPNKAMNPG  592 (954)
Q Consensus       580 aG~vn~~~Al~pg  592 (954)
                      +|+||+.+|+...
T Consensus       307 ~G~vd~~~a~~~~  319 (434)
T 1wmd_A          307 WGRVTLDKSLNVA  319 (434)
T ss_dssp             TCBCCHHHHHTCE
T ss_pred             cCeEeHHHhcccc
Confidence            9999999999743

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*

Probab=100.00  E-value=1e-42  Score=381.56  Aligned_cols=232  Identities=30%  Similarity=0.353  Sum_probs=196.7

Q ss_pred             ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccC---CCCCC
Q 042478          129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKG---IMDMI  205 (954)
Q Consensus       129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~---~~~~~  205 (954)
                      ...+|..+.+|+||+|||||||||++||+|.++..                             .+++|.++   ..+.+
T Consensus        18 ~~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~~~-----------------------------~~~~~~~~~~~~~d~~   68 (284)
T 1sh7_A           18 LDRNYNANFDGFGVTAYVIDTGVNNNHEEFGGRSV-----------------------------SGYDFVDNDADSSDCN   68 (284)
T ss_dssp             CCSBCCCSCCCTTCEEEEEESCCCTTCTTTTTCEE-----------------------------EEEETTTTBSCCCCSS
T ss_pred             chhhhhcCCCCCCCEEEEEcCCCCCCChhHcCCcc-----------------------------ccccccCCCCCCCCCC
Confidence            45789999999999999999999999999974311                             11122211   11223


Q ss_pred             CchhhhccccccccceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcC--CccEEEecccCCCCCCCccCcccHHHH
Q 042478          206 NASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHD--GVDVLSVSIGNEIPLFSYIDQRDSIAI  282 (954)
Q Consensus       206 G~GTa~v~G~a~G~~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~d--gvdVINlSlG~~~~~~~~~~~~d~~~~  282 (954)
                      |||| |++|+++|...||||+|+|+.+|+++..+ ++.+++++||+||+++  +++|||||||...  .      ..+..
T Consensus        69 gHGT-~vAgiia~~~~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~~~Vin~S~G~~~--~------~~~~~  139 (284)
T 1sh7_A           69 GHGT-HVAGTIGGSQYGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGGQ--S------TALDS  139 (284)
T ss_dssp             SHHH-HHHHHHHCTTTCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCSSEEEEECCCBSC--C------HHHHH
T ss_pred             CcHH-HHHHHHhcccCCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCCCcEEEeCCCCCC--C------HHHHH
Confidence            8999 99999988889999999999999998766 7788999999999974  7999999999873  2      67888


Q ss_pred             HHHHHHHCCCEEEEeCCCCCCCCC-ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccc
Q 042478          283 GSFHAIAKGITVVSSAGNDGPVAQ-TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSER  361 (954)
Q Consensus       283 a~~~A~~~Gi~VV~AAGN~G~~~~-t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~  361 (954)
                      ++.+|.++|++||+||||+|.+.. ..++..|++|+|||++.                                      
T Consensus       140 ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------------------------------------  181 (284)
T 1sh7_A          140 AVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTS--------------------------------------  181 (284)
T ss_dssp             HHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECT--------------------------------------
T ss_pred             HHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecC--------------------------------------
Confidence            899999999999999999997642 45677899999998531                                      


Q ss_pred             cccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHH
Q 042478          362 IAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQ  441 (954)
Q Consensus       362 ~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~  441 (954)
                                                                                                      
T Consensus       182 --------------------------------------------------------------------------------  181 (284)
T 1sh7_A          182 --------------------------------------------------------------------------------  181 (284)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCc
Q 042478          442 ILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSM  521 (954)
Q Consensus       442 l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSM  521 (954)
                                                .+.++.||++||.+        ||+|||++|+++++.      +.|..++||||
T Consensus       182 --------------------------~~~~~~~S~~G~~~--------di~ApG~~i~s~~~~------~~~~~~sGTS~  221 (284)
T 1sh7_A          182 --------------------------SDSRSSFSNWGSCV--------DLFAPGSQIKSAWYD------GGYKTISGTSM  221 (284)
T ss_dssp             --------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECTT------SSEEEECSHHH
T ss_pred             --------------------------CCCcCcccCCCCcc--------EEEeccCCeEEecCC------CCEEEccChHH
Confidence                                      13467899999975        999999999999986      68999999999


Q ss_pred             hhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 042478          522 SCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQT  556 (954)
Q Consensus       522 AaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~  556 (954)
                      |||||||++|||+|++|+|+|++||++|++||++.
T Consensus       222 AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~  256 (284)
T 1sh7_A          222 ATPHVAGVAALYLQENNGLTPLQLTGLLNSRASEN  256 (284)
T ss_dssp             HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccC
Confidence            99999999999999999999999999999999965

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ...

Probab=100.00  E-value=1.1e-42  Score=380.42  Aligned_cols=227  Identities=28%  Similarity=0.333  Sum_probs=192.5

Q ss_pred             cccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhh
Q 042478          132 LSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNT  211 (954)
Q Consensus       132 ~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~  211 (954)
                      .|.. .+|+||+|||||||||++||+|.+...                             ..++|..+..+.+|||| |
T Consensus        24 ~~~~-~~G~gv~VaViDsGvd~~H~~l~~~~~-----------------------------~~~~~~~~~~d~~gHGT-~   72 (279)
T 2pwa_A           24 YYDE-SAGQGSCVYVIDTGIEASHPEFEGRAQ-----------------------------MVKTYYYSSRDGNGHGT-H   72 (279)
T ss_dssp             ECCT-TTTTTEEEEEEESCCCTTCGGGTTCEE-----------------------------EEEESSSCSSCSSSHHH-H
T ss_pred             cccC-CCCCCCEEEEEeCCCCCCChhHhCccc-----------------------------cccCCCCCCCCCCCCHH-H
Confidence            4543 789999999999999999999974311                             11222222223348999 9


Q ss_pred             ccccccccceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCc-------cEEEecccCCCCCCCccCcccHHHHH
Q 042478          212 DEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGV-------DVLSVSIGNEIPLFSYIDQRDSIAIG  283 (954)
Q Consensus       212 v~G~a~G~~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgv-------dVINlSlG~~~~~~~~~~~~d~~~~a  283 (954)
                      ++|+++|...||||+|+|+.+|++++.+ ++.+++++||+||+++++       +|||||||...  .      +.+..+
T Consensus        73 vAgiia~~~~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vin~S~G~~~--~------~~~~~a  144 (279)
T 2pwa_A           73 CAGTVGSRTYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGY--S------SSVNSA  144 (279)
T ss_dssp             HHHHHHCTTTCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEEC--C------HHHHHH
T ss_pred             HHHHHHhcccccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccEEEecCCCCC--C------HHHHHH
Confidence            9999999899999999999999998876 788999999999999988       99999999763  2      678889


Q ss_pred             HHHHHHCCCEEEEeCCCCCCCCC-ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeecccc
Q 042478          284 SFHAIAKGITVVSSAGNDGPVAQ-TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERI  362 (954)
Q Consensus       284 ~~~A~~~Gi~VV~AAGN~G~~~~-t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~  362 (954)
                      +.++.++|++||+||||+|.+.. ..++..|++|+|||++.                                       
T Consensus       145 i~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------------------------------------  185 (279)
T 2pwa_A          145 AARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR---------------------------------------  185 (279)
T ss_dssp             HHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT---------------------------------------
T ss_pred             HHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecC---------------------------------------
Confidence            99999999999999999997643 35677899999998531                                       


Q ss_pred             ccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHH
Q 042478          363 AFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQI  442 (954)
Q Consensus       363 ~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l  442 (954)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (279)
T 2pwa_A          186 --------------------------------------------------------------------------------  185 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCch
Q 042478          443 LSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMS  522 (954)
Q Consensus       443 ~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMA  522 (954)
                                               .+.++.||+|||.+        ||+|||++|+++++.      +.|..++|||||
T Consensus       186 -------------------------~~~~~~~S~~G~~~--------di~APG~~i~s~~~~------~~~~~~sGTS~A  226 (279)
T 2pwa_A          186 -------------------------YDRRSSFSNYGSVL--------DIFGPGTDILSTWIG------GSTRSISGTSMA  226 (279)
T ss_dssp             -------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEEETT------TEEEEECSHHHH
T ss_pred             -------------------------CCCcCCcCCCCCcc--------eEEEecCCeEEeecC------CCEEEcCChHHH
Confidence                                     13467899999965        999999999999987      689999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 042478          523 CPHVAGIAALIKSLHRDWSPAAIRSALVTTASQT  556 (954)
Q Consensus       523 aP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~  556 (954)
                      ||||||++|||+|+ |+++|.+||++|++||++.
T Consensus       227 aP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~  259 (279)
T 2pwa_A          227 TPHVAGLAAYLMTL-GKTTAASACRYIADTANKG  259 (279)
T ss_dssp             HHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEES
T ss_pred             HHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccc
Confidence            99999999999999 9999999999999999964

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus}

Probab=100.00  E-value=2.2e-42  Score=377.98  Aligned_cols=236  Identities=28%  Similarity=0.318  Sum_probs=199.4

Q ss_pred             CccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceecccc-CCCCCCC
Q 042478          128 SSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIK-GIMDMIN  206 (954)
Q Consensus       128 ~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~-~~~~~~G  206 (954)
                      +...+|..+.+|+||+|||||||||++||+|.++...                             .++|.. ...+.+|
T Consensus        19 ~~~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~~~~-----------------------------~~~~~~~~~~d~~g   69 (276)
T 4dzt_A           19 PLSNSYTYTATGRGVNVYVIDTGIRTTHREFGGRARV-----------------------------GYDALGGNGQDCNG   69 (276)
T ss_dssp             SCCSCEECSCCCTTCEEEEEESCCCTTCGGGTTCEEE-----------------------------EEETTSSCSCCSSS
T ss_pred             CcccceecCCCCCCcEEEEEccCCCCCChhHccCeec-----------------------------cccCCCCCCCCCCC
Confidence            3567899999999999999999999999999743211                             111111 1222338


Q ss_pred             chhhhccccccccceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcC--CccEEEecccCCCCCCCccCcccHHHHH
Q 042478          207 ASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHD--GVDVLSVSIGNEIPLFSYIDQRDSIAIG  283 (954)
Q Consensus       207 ~GTa~v~G~a~G~~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~d--gvdVINlSlG~~~~~~~~~~~~d~~~~a  283 (954)
                      ||| |++|+++|...||||+|+|+.+|++++.+ +..+++++||+|++++  +++|||||||...  .      ..+..+
T Consensus        70 HGT-~vAgiiag~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~vin~S~g~~~--~------~~~~~a  140 (276)
T 4dzt_A           70 HGT-HVAGTIGGVTYGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGV--S------TALDNA  140 (276)
T ss_dssp             HHH-HHHHHHHCTTTCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC--C------HHHHHH
T ss_pred             CHH-HHHHHHHccccCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCCCeEEEECCCCCC--C------HHHHHH
Confidence            999 99999999889999999999999998776 7889999999999987  9999999999864  2      678889


Q ss_pred             HHHHHHCCCEEEEeCCCCCCCCCcc-ccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeecccc
Q 042478          284 SFHAIAKGITVVSSAGNDGPVAQTI-VNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERI  362 (954)
Q Consensus       284 ~~~A~~~Gi~VV~AAGN~G~~~~t~-~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~  362 (954)
                      +.++.++|+++|+||||+|...... ++..|++|+|||++.                                       
T Consensus       141 ~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------------------------------------  181 (276)
T 4dzt_A          141 VKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTS---------------------------------------  181 (276)
T ss_dssp             HHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT---------------------------------------
T ss_pred             HHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECC---------------------------------------
Confidence            9999999999999999999765443 677889999998431                                       


Q ss_pred             ccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHH
Q 042478          363 AFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQI  442 (954)
Q Consensus       363 ~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l  442 (954)
                                                                                                      
T Consensus       182 --------------------------------------------------------------------------------  181 (276)
T 4dzt_A          182 --------------------------------------------------------------------------------  181 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCch
Q 042478          443 LSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMS  522 (954)
Q Consensus       443 ~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMA  522 (954)
                                               .+.++.||++||..        ||+|||++|+++++..    ...|..++|||||
T Consensus       182 -------------------------~~~~~~~S~~g~~~--------dv~ApG~~i~s~~~~~----~~~~~~~sGTS~A  224 (276)
T 4dzt_A          182 -------------------------SDARASFSNYGSCV--------DLFAPGASIPSAWYTS----DTATQTLNGTSMA  224 (276)
T ss_dssp             -------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECTTS----SSCEEEECSHHHH
T ss_pred             -------------------------CCCcCCcCCCCCCc--------eEEeCCCCeEccccCC----CCceEEeeEHHHH
Confidence                                     23467899999976        9999999999998762    2579999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCC
Q 042478          523 CPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTG  557 (954)
Q Consensus       523 aP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~  557 (954)
                      ||||||++|||+|++|+++|++||++|++||++..
T Consensus       225 aP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~  259 (276)
T 4dzt_A          225 TPHVAGVAALYLEQNPSATPASVASAILNGATTGR  259 (276)
T ss_dssp             HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCc
Confidence            99999999999999999999999999999999754

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP}

Probab=100.00  E-value=5.8e-42  Score=374.81  Aligned_cols=234  Identities=30%  Similarity=0.329  Sum_probs=196.2

Q ss_pred             ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccC---CCCCC
Q 042478          129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKG---IMDMI  205 (954)
Q Consensus       129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~---~~~~~  205 (954)
                      ...+|..+.+|+||+|||||||||++||+|.++..                             .+++|.++   ..+.+
T Consensus        20 ~~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~~~-----------------------------~~~d~~~~~~~~~d~~   70 (278)
T 2b6n_A           20 LDNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGRAS-----------------------------SGYDFIDNDYDATDCN   70 (278)
T ss_dssp             CCSEEECSCCCTTCEEEEEESCCCTTCGGGTTCEE-----------------------------EEEETTTTBSCCCCSS
T ss_pred             cchhcccCCCCCCCEEEEEeCCCCCCChhHhcccc-----------------------------cCeecCCCCCCCCCCC
Confidence            45789999999999999999999999999974311                             11112111   11223


Q ss_pred             CchhhhccccccccceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhc--CCccEEEecccCCCCCCCccCcccHHHH
Q 042478          206 NASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIH--DGVDVLSVSIGNEIPLFSYIDQRDSIAI  282 (954)
Q Consensus       206 G~GTa~v~G~a~G~~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~--dgvdVINlSlG~~~~~~~~~~~~d~~~~  282 (954)
                      |||| |++|+++|...||||+|+|+.+|++++.+ +..+++++||+|+++  .|++|||||||...  .      ..+..
T Consensus        71 gHGT-~vAgiia~~~~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g~~Vin~S~G~~~--~------~~~~~  141 (278)
T 2b6n_A           71 GHGT-HVAGTIGGSTYGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGA--S------QATDD  141 (278)
T ss_dssp             SHHH-HHHHHHHCTTTCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC--C------HHHHH
T ss_pred             CcHH-HHHHHHHCCCcCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCCCeEEEECCCCCc--C------HHHHH
Confidence            8999 99999988889999999999999998766 788999999999997  59999999999864  2      66788


Q ss_pred             HHHHHHHCCCEEEEeCCCCCCCCC-ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccc
Q 042478          283 GSFHAIAKGITVVSSAGNDGPVAQ-TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSER  361 (954)
Q Consensus       283 a~~~A~~~Gi~VV~AAGN~G~~~~-t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~  361 (954)
                      ++.++.++|++||+||||+|.+.. ..++..|++|+|||++.                                      
T Consensus       142 ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------------------------------------  183 (278)
T 2b6n_A          142 AVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTS--------------------------------------  183 (278)
T ss_dssp             HHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT--------------------------------------
T ss_pred             HHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCC--------------------------------------
Confidence            889999999999999999997643 34677899999998531                                      


Q ss_pred             cccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHH
Q 042478          362 IAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQ  441 (954)
Q Consensus       362 ~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~  441 (954)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (278)
T 2b6n_A          184 --------------------------------------------------------------------------------  183 (278)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCc
Q 042478          442 ILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSM  521 (954)
Q Consensus       442 l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSM  521 (954)
                                                .+.++.||++||..        ||+|||++|+++++..    .+.|..++||||
T Consensus       184 --------------------------~~~~~~~S~~G~~~--------di~ApG~~i~s~~~~~----~~~~~~~sGTS~  225 (278)
T 2b6n_A          184 --------------------------NDSRSSFSNYGTCL--------DIYAPGSSITSSWYTS----NSATNTISGTSM  225 (278)
T ss_dssp             --------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECTTS----TTCEEEECSHHH
T ss_pred             --------------------------CCCcCCcCCCCCCC--------eEEeCCCCeECcccCC----CCCEEEeCcHHH
Confidence                                      13467899999865        9999999999998752    267999999999


Q ss_pred             hhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 042478          522 SCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQT  556 (954)
Q Consensus       522 AaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~  556 (954)
                      |||||||++|||+|++|++++++||++|++||++.
T Consensus       226 AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~  260 (278)
T 2b6n_A          226 ASPHVAGVAALYLDENPNLSPAQVTNLLKTRATAD  260 (278)
T ss_dssp             HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccC
Confidence            99999999999999999999999999999999864

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A

Probab=100.00  E-value=1e-41  Score=373.29  Aligned_cols=229  Identities=27%  Similarity=0.309  Sum_probs=194.2

Q ss_pred             ccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhh
Q 042478          131 NLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTN  210 (954)
Q Consensus       131 ~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa  210 (954)
                      ..|... +|+||+|||||||||++||+|.+...                             ..+.|..+..+.+|||| 
T Consensus        24 ~~~~~~-~G~gv~VaViDtGvd~~h~~l~~~~~-----------------------------~~~~~~~~~~d~~gHGT-   72 (279)
T 3f7m_A           24 YAYDTS-AGAGACVYVIDTGVEDTHPDFEGRAK-----------------------------QIKSYASTARDGHGHGT-   72 (279)
T ss_dssp             EEECTT-TTTTEEEEEEESCCCTTCGGGTTCEE-----------------------------EEEECSSSSSCSSSHHH-
T ss_pred             eeecCC-CCCCCEEEEEcCCCCCCChhhccccc-----------------------------cccCCCCCCCCCCCcHH-
Confidence            566666 99999999999999999999974321                             11222222223348999 


Q ss_pred             hccccccccceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCC-------ccEEEecccCCCCCCCccCcccHHHH
Q 042478          211 TDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDG-------VDVLSVSIGNEIPLFSYIDQRDSIAI  282 (954)
Q Consensus       211 ~v~G~a~G~~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dg-------vdVINlSlG~~~~~~~~~~~~d~~~~  282 (954)
                      |++|+++|...||||+|+|+.+|+++..+ ++.+++++||+|+++++       ++|||||||...  .      +.+..
T Consensus        73 ~vAgii~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin~S~g~~~--~------~~~~~  144 (279)
T 3f7m_A           73 HCAGTIGSKTWGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGGY--S------AALNQ  144 (279)
T ss_dssp             HHHHHHHCTTTCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEEC--C------HHHHH
T ss_pred             HHHHHHhcCccccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeEEEeCCCcCc--c------HHHHH
Confidence            99999999889999999999999998776 78899999999999986       899999999763  2      67888


Q ss_pred             HHHHHHHCCCEEEEeCCCCCCCCCc-cccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccc
Q 042478          283 GSFHAIAKGITVVSSAGNDGPVAQT-IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSER  361 (954)
Q Consensus       283 a~~~A~~~Gi~VV~AAGN~G~~~~t-~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~  361 (954)
                      ++.++.++|++||+||||+|.+... .++..|++|+|||++.                                      
T Consensus       145 a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------------------------------------  186 (279)
T 3f7m_A          145 AAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDS--------------------------------------  186 (279)
T ss_dssp             HHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT--------------------------------------
T ss_pred             HHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCC--------------------------------------
Confidence            9999999999999999999976443 3677899999998431                                      


Q ss_pred             cccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHH
Q 042478          362 IAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQ  441 (954)
Q Consensus       362 ~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~  441 (954)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (279)
T 3f7m_A          187 --------------------------------------------------------------------------------  186 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCc
Q 042478          442 ILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSM  521 (954)
Q Consensus       442 l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSM  521 (954)
                                                .+.++.||++||..        ||+|||++|+++++.      +.|..++||||
T Consensus       187 --------------------------~~~~~~~S~~g~~~--------di~ApG~~i~s~~~~------~~~~~~sGTS~  226 (279)
T 3f7m_A          187 --------------------------NDVRSTFSNYGRVV--------DIFAPGTSITSTWIG------GRTNTISGTSM  226 (279)
T ss_dssp             --------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECGG------GCEEEECSHHH
T ss_pred             --------------------------CCCCCCCCCCCCCC--------eEEECCCCeEeecCC------CCEEEeeEHHH
Confidence                                      23467899999965        999999999999986      78999999999


Q ss_pred             hhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCC
Q 042478          522 SCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTG  557 (954)
Q Consensus       522 AaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~  557 (954)
                      |||||||++|||+|++|+ +|++||++|++||++..
T Consensus       227 AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~  261 (279)
T 3f7m_A          227 ATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNV  261 (279)
T ss_dssp             HHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESC
T ss_pred             HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccc
Confidence            999999999999999999 99999999999999653

>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1

Probab=100.00  E-value=2.2e-41  Score=396.77  Aligned_cols=290  Identities=16%  Similarity=0.121  Sum_probs=209.0

Q ss_pred             CccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceecccc-CCCCCCC
Q 042478          128 SSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIK-GIMDMIN  206 (954)
Q Consensus       128 ~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~-~~~~~~G  206 (954)
                      ++..+|..+++|+||+|||||||||++||+|.++...    ...|        +|....-+       .... ...+.+|
T Consensus        26 ~~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~~----~~~~--------d~~~~~~~-------p~~~~~~~d~~g   86 (471)
T 1p8j_A           26 NVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDP----GASF--------DVNDQDPD-------PQPRYTQMNDNR   86 (471)
T ss_dssp             CCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBCG----GGCE--------ETTTTBSC-------CCCCCCTTCTTC
T ss_pred             ChHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhccCc----cCcc--------cccCCCCC-------CCCccCCCCCCC
Confidence            4778999999999999999999999999999754211    0001        11000000       0000 0112238


Q ss_pred             chhhhcccccccc------ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhc-CCccEEEecccCCCCCCCccCcccH
Q 042478          207 ASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIH-DGVDVLSVSIGNEIPLFSYIDQRDS  279 (954)
Q Consensus       207 ~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~-dgvdVINlSlG~~~~~~~~~~~~d~  279 (954)
                      ||| |++|++++.      +.||||+|+|+.+|+++   +..+++++|+++|++ ++++|||||||..............
T Consensus        87 HGT-~vAGiiaa~~~n~~g~~GvAp~a~i~~~rv~~---g~~~~~~~ai~~a~~~~~~~Vin~S~G~~~~~~~~~~~~~~  162 (471)
T 1p8j_A           87 HGT-RCAGEVAAVANNGVCGVGVAYNARIGGVRMLD---GEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARL  162 (471)
T ss_dssp             HHH-HHHHHHHCCSSSSSSCCCTTTTSEEEEEECSS---SCCCHHHHHHHHTSCTTTCCEEEECCBSCCSSSCCBCCCHH
T ss_pred             cHH-HHHHHHHeeccCCCCCEEECCCCeEEEEEccC---CchhHHHHHHHhhhccCCCeEEEeccCcCCCCCcccCcHHH
Confidence            999 999987663      58999999999999995   456789999999999 9999999999986411101111134


Q ss_pred             HHHHHHHHHH-----CCCEEEEeCCCCCCCCCc----cccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcC
Q 042478          280 IAIGSFHAIA-----KGITVVSSAGNDGPVAQT----IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVS  350 (954)
Q Consensus       280 ~~~a~~~A~~-----~Gi~VV~AAGN~G~~~~t----~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~  350 (954)
                      +..++.++++     +|++||+||||+|.....    ....+|++|+|||++.                           
T Consensus       163 ~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~---------------------------  215 (471)
T 1p8j_A          163 AEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ---------------------------  215 (471)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT---------------------------
T ss_pred             HHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccC---------------------------
Confidence            5556666654     699999999999975322    1234589999998542                           


Q ss_pred             CceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccc
Q 042478          351 HGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIP  430 (954)
Q Consensus       351 ~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip  430 (954)
                                                                                                      
T Consensus       216 --------------------------------------------------------------------------------  215 (471)
T 1p8j_A          216 --------------------------------------------------------------------------------  215 (471)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCC
Q 042478          431 CIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDI  510 (954)
Q Consensus       431 ~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~  510 (954)
                                                           .+.++.||++||..  ....+|+..+||.+|+++.+.     +
T Consensus       216 -------------------------------------~g~~a~~S~~g~~~--~~~~~~~~~~~g~~i~st~~~-----~  251 (471)
T 1p8j_A          216 -------------------------------------FGNVPWYSEACSST--LATTYSSGNQNEKQIVTTDLR-----Q  251 (471)
T ss_dssp             -------------------------------------TSCCCTTCCBCTTC--CEEEECCCSTTSCCEEEEETT-----T
T ss_pred             -------------------------------------CCCcccccCCCCcc--eEEeCCCCCCCCCCEEEeeCC-----C
Confidence                                                 13467899999986  333445555566799999875     2


Q ss_pred             CceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478          511 QGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN  590 (954)
Q Consensus       511 ~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~  590 (954)
                      +.|..++|||||||||||++|||+|++|+|++++||++|++||++.+.....+...  .........||+|+||+.+|++
T Consensus       252 ~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n--~~g~~~~~~~G~G~vda~~Av~  329 (471)
T 1p8j_A          252 KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATN--GVGRKVSHSYGYGLLDAGAMVA  329 (471)
T ss_dssp             EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEEC--TTSCEEBTTTBTCBCCHHHHHH
T ss_pred             CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceec--CCCcccCCCCCCEEEcHhHHHH
Confidence            57999999999999999999999999999999999999999999876443222211  1112245689999999999998


Q ss_pred             CCc
Q 042478          591 PGL  593 (954)
Q Consensus       591 pgl  593 (954)
                      ...
T Consensus       330 ~a~  332 (471)
T 1p8j_A          330 LAQ  332 (471)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            443

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A

Probab=100.00  E-value=3e-41  Score=392.92  Aligned_cols=246  Identities=22%  Similarity=0.228  Sum_probs=187.3

Q ss_pred             ccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhh
Q 042478          131 NLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTN  210 (954)
Q Consensus       131 ~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa  210 (954)
                      ..|..+.+|+||+|||||||||++||+|.++...     ..|+...+  .            .+..|.....+.+|||| 
T Consensus        17 ~aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~~~-----~~~~~v~~--~------------dg~~f~~~~~D~~GHGT-   76 (546)
T 2qtw_B           17 DEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVMV-----TDFENVPE--E------------DGTRFHRQASKCDSHGT-   76 (546)
T ss_dssp             -------CCTTSEEEEEESCCCTTSTTTTTTEEE-----EEEECCCC--C------------C-------CTTTTHHHH-
T ss_pred             hhcccCCCCCCcEEEEECCCCCCCChHHcccccc-----cCcccccC--C------------CCccccCCCCCCCChHH-
Confidence            3788899999999999999999999999754210     00100000  0            00011111222338999 


Q ss_pred             hccccccccceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcC------CccEEEecccCCCCCCCccCcccHHHHH
Q 042478          211 TDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHD------GVDVLSVSIGNEIPLFSYIDQRDSIAIG  283 (954)
Q Consensus       211 ~v~G~a~G~~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~d------gvdVINlSlG~~~~~~~~~~~~d~~~~a  283 (954)
                      |++|+++|...||||+|+|+.+|++++.| ++.+++++||+|++++      +++|||||||+..  .      ..+..+
T Consensus        77 hVAGIIag~~~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~~~g~~VINmSlGg~~--s------~~l~~A  148 (546)
T 2qtw_B           77 HLAGVVSGRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGY--S------RVLNAA  148 (546)
T ss_dssp             HHHHHHHCTTTCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHSCCSCEEEEECEEEEC--C------HHHHHH
T ss_pred             HHHHHHhccCCCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhccCCCeEEEecCCCCC--c------HHHHHH
Confidence            99999999889999999999999998776 7788999999999974      9999999999753  2      678889


Q ss_pred             HHHHHHCCCEEEEeCCCCCCCCC-ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeecccc
Q 042478          284 SFHAIAKGITVVSSAGNDGPVAQ-TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERI  362 (954)
Q Consensus       284 ~~~A~~~Gi~VV~AAGN~G~~~~-t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~  362 (954)
                      +.+|.++|++||+||||+|.+.. ..++..|++|+|||++.+...                                   
T Consensus       149 i~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~-----------------------------------  193 (546)
T 2qtw_B          149 CQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP-----------------------------------  193 (546)
T ss_dssp             HHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB-----------------------------------
T ss_pred             HHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc-----------------------------------
Confidence            99999999999999999997643 346778999999986532100                                   


Q ss_pred             ccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHH
Q 042478          363 AFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQI  442 (954)
Q Consensus       363 ~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l  442 (954)
                                                                                                      
T Consensus       194 --------------------------------------------------------------------------------  193 (546)
T 2qtw_B          194 --------------------------------------------------------------------------------  193 (546)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCch
Q 042478          443 LSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMS  522 (954)
Q Consensus       443 ~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMA  522 (954)
                                               ...-..||++||.        |||+|||++|+++++..    ++.|..++|||||
T Consensus       194 -------------------------a~~s~~fSn~G~~--------vDI~APG~~I~St~~~~----~~~y~~~SGTSmA  236 (546)
T 2qtw_B          194 -------------------------VTLGTLGTNFGRC--------VDLFAPGEDIIGASSDC----STCFVSQSGTSQA  236 (546)
T ss_dssp             -------------------------CEETTEECCBSTT--------CCEEEECSSEEEECTTS----TTCEEEECSHHHH
T ss_pred             -------------------------ccccCCcCCCCCc--------ceEEecCccEEeeccCC----CCcEeeeCcCcHH
Confidence                                     0000138999985        49999999999999862    2579999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 042478          523 CPHVAGIAALIKSLHRDWSPAAIRSALVTTASQT  556 (954)
Q Consensus       523 aP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~  556 (954)
                      ||||||++|||+|++|+|+|+|||++|++||.+.
T Consensus       237 AP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~  270 (546)
T 2qtw_B          237 AAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKD  270 (546)
T ss_dssp             HHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEES
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcccc
Confidence            9999999999999999999999999999999864

>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A*

Probab=100.00  E-value=1.7e-40  Score=391.99  Aligned_cols=277  Identities=18%  Similarity=0.137  Sum_probs=209.3

Q ss_pred             CccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCC------
Q 042478          128 SSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGI------  201 (954)
Q Consensus       128 ~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~------  201 (954)
                      ++..+|..+++|+||+|||||||||++||+|.++...         .                  +.++|..+.      
T Consensus        42 ~~~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~~~---------~------------------~~~d~~~~~~~~~p~   94 (503)
T 2id4_A           42 NVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCA---------E------------------GSWDFNDNTNLPKPR   94 (503)
T ss_dssp             CCHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBCG---------G------------------GCEETTTTBSCCCCC
T ss_pred             ChHHHHhcCCCCCCeEEEEEeCCCCCCChhHhhcccc---------c------------------CcccCCCCCCCCCCC
Confidence            4678999999999999999999999999999764221         0                  011111111      


Q ss_pred             CCCCCchhhhcccccccc------ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhcCCccEEEecccCCCCCCCccC
Q 042478          202 MDMINASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYID  275 (954)
Q Consensus       202 ~~~~G~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~  275 (954)
                      .+.+|||| |++|++++.      ..||||+|+|+.+|+++.. ++..++++||+||++++ ||||||||..........
T Consensus        95 ~d~~gHGT-~vAGiiaa~~~n~~~~~GvAp~a~i~~~rv~~~~-~~~~~~~~ai~~a~~~~-~Iin~S~G~~~~~~~~~~  171 (503)
T 2id4_A           95 LSDDYHGT-RCAGEIAAKKGNNFCGVGVGYNAKISGIRILSGD-ITTEDEAASLIYGLDVN-DIYSCSWGPADDGRHLQG  171 (503)
T ss_dssp             STTTTHHH-HHHHHHHCCSSSSSSCCCTTTTSEEEEEECTTSC-CCHHHHHHHTTTTTTTC-SEEEECEESCCSSSCCBC
T ss_pred             CCCCChHH-HHHHHHHhccCCCCCcEEECCCCEEEEEEeeCCC-CChHHHHHHHHhHhhcC-CEEEeCCCcCCCCccccC
Confidence            12238999 999987664      4899999999999999643 67889999999999998 999999998642110111


Q ss_pred             cccHHHHHHHHHH-----HCCCEEEEeCCCCCCCCCc--cc--cCCCceEEEcccccCCCccceeecCCCeEEeeeeeec
Q 042478          276 QRDSIAIGSFHAI-----AKGITVVSSAGNDGPVAQT--IV--NTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDI  346 (954)
Q Consensus       276 ~~d~~~~a~~~A~-----~~Gi~VV~AAGN~G~~~~t--~~--~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~  346 (954)
                      ....+..++.+|.     .+|++||+||||+|.....  .+  ..++++|+|||++.                       
T Consensus       172 ~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~-----------------------  228 (503)
T 2id4_A          172 PSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH-----------------------  228 (503)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT-----------------------
T ss_pred             chHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCC-----------------------
Confidence            1145667777776     4799999999999965322  22  24678999998532                       


Q ss_pred             cCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCC
Q 042478          347 GKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSC  426 (954)
Q Consensus       347 ~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~  426 (954)
                                                                                                      
T Consensus       229 --------------------------------------------------------------------------------  228 (503)
T 2id4_A          229 --------------------------------------------------------------------------------  228 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEe----cCCceEecC
Q 042478          427 NLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVA----PGVDILSAY  502 (954)
Q Consensus       427 ~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~A----PG~~I~sa~  502 (954)
                                                               .+.++.||++||..        |++|    ||.+|++++
T Consensus       229 -----------------------------------------~~~~a~~S~~g~~~--------~~~a~~~gpG~~I~st~  259 (503)
T 2id4_A          229 -----------------------------------------KDLHPPYSEGCSAV--------MAVTYSSGSGEYIHSSD  259 (503)
T ss_dssp             -----------------------------------------TSCCCTTCCCCTTE--------EEEEECSBTTBCEEEEC
T ss_pred             -----------------------------------------CCCcCCcCCCCCcc--------eEeecCCCCCCceEeec
Confidence                                                     13467899999987        8888    899999995


Q ss_pred             CCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCC-CccccccCCCCCCCCCCCCCCC
Q 042478          503 PPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTD-GMNIFEEGSTRKEADPFDIGGG  581 (954)
Q Consensus       503 ~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~-g~pi~~~~~~~~~~~~~~~GaG  581 (954)
                      ..     ++.|..++|||||||||||++|||+|++|+|++++||++|+.||++++.. ...+...  .........||+|
T Consensus       260 ~~-----~~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~~~--~~g~~~~~~~G~G  332 (503)
T 2id4_A          260 IN-----GRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDS--AMGKKYSHRYGFG  332 (503)
T ss_dssp             ST-----TCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEEC--SSSSEEBTTTBTC
T ss_pred             CC-----CCceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCceec--CCCCccCcccCCc
Confidence            54     26899999999999999999999999999999999999999999987543 1111111  1112235689999


Q ss_pred             ccCcccccCCCc
Q 042478          582 HVNPNKAMNPGL  593 (954)
Q Consensus       582 ~vn~~~Al~pgl  593 (954)
                      +||+.+|++...
T Consensus       333 ~vda~~Av~~a~  344 (503)
T 2id4_A          333 KIDAHKLIEMSK  344 (503)
T ss_dssp             BCCHHHHHHHHT
T ss_pred             EecHHHHHHHHh
Confidence            999999998443

>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria}

Probab=100.00  E-value=7.7e-39  Score=386.91  Aligned_cols=313  Identities=18%  Similarity=0.087  Sum_probs=197.4

Q ss_pred             CccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCc
Q 042478          128 SSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINA  207 (954)
Q Consensus       128 ~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~  207 (954)
                      ++..+|..+++|+||+|||||||||++||+|.++...     ..+        +|.    +     .........+.+||
T Consensus        58 nv~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n~~~-----~~~--------~~~----~-----~~~dp~p~~~~~gH  115 (600)
T 3hjr_A           58 NLWWAHRTGVLGQGVNVAVVDDGLAIAHPDLADNVRP-----GSK--------NVV----T-----GSDDPTPTDPDTAH  115 (600)
T ss_dssp             CCHHHHHHTCSCTTCEEEEESSCCCTTCTTTGGGBCS-----CCB--------CTT----T-----SSSCCCCCSTTCCH
T ss_pred             CHHHHHHcCCCCCCeEEEEEcCCCCCCChhHhhcccc-----Ccc--------eee----c-----CCCCCCCCCCCCCh
Confidence            4678999999999999999999999999999754221     000        000    0     00000001122389


Q ss_pred             hhhhcccccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHH-HHHhcCCccEEEecccCCCCCCCccCcccH-
Q 042478          208 STNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAF-DKAIHDGVDVLSVSIGNEIPLFSYIDQRDS-  279 (954)
Q Consensus       208 GTa~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Ai-d~Ai~dgvdVINlSlG~~~~~~~~~~~~d~-  279 (954)
                      || |++|++++.     +.||||+|+|+.||++++.+ +..++++.|+ +++..++++|||+|||...... ... ... 
T Consensus       116 GT-hVAGiIAa~~n~~g~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~G~~~~~~-~~~-~~~~  192 (600)
T 3hjr_A          116 GT-SVSGIIAAVDNAIGTKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYGMSVVDP-RSA-NSLD  192 (600)
T ss_dssp             HH-HHHHHHHCCSSSSSCCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECCCCCCSSC-CCS-CSHH
T ss_pred             HH-HHHHHHhEeCCCCCcEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEecccCccccCC-ccC-Ccch
Confidence            99 999987653     68999999999999998775 6677777776 6778899999999999764222 111 012 


Q ss_pred             ---HHHHHHHH--HHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCcee
Q 042478          280 ---IAIGSFHA--IAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFT  354 (954)
Q Consensus       280 ---~~~a~~~A--~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~  354 (954)
                         +..++..+  ..+|+++|+||||.+.......     . .+.+..            ++                  
T Consensus       193 ~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~-----~-~~~~~g------------~~------------------  236 (600)
T 3hjr_A          193 QSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGG-----Y-VLNRTG------------NG------------------  236 (600)
T ss_dssp             HHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETT-----E-EEEEES------------SC------------------
T ss_pred             hhhHHHHHHHhhhccCCcEEEEeccCccccccccc-----c-ccccCC------------CC------------------
Confidence               22222222  2579999999999873211000     0 000000            00                  


Q ss_pred             eeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEe
Q 042478          355 GLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKV  434 (954)
Q Consensus       355 ~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i  434 (954)
                                .......|....  +...                                                    
T Consensus       237 ----------~~~~~~~~~~d~--~~~~----------------------------------------------------  252 (600)
T 3hjr_A          237 ----------PKLPFENSNLDP--SNSN----------------------------------------------------  252 (600)
T ss_dssp             ----------CCCCSSBTTSSG--GGGS----------------------------------------------------
T ss_pred             ----------CCCCcccccccC--cccc----------------------------------------------------
Confidence                      000000111000  0000                                                    


Q ss_pred             ehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceE--------ecCCCCC
Q 042478          435 NYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDIL--------SAYPPIG  506 (954)
Q Consensus       435 ~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~--------sa~~~~~  506 (954)
                                            ....++......+.++.||++|+..        +++|||.++.        ...++..
T Consensus       253 ----------------------~~~IsVgA~~~~g~~a~yS~~G~~v--------~~~apg~~~~~~~~~~vt~~~pG~~  302 (600)
T 3hjr_A          253 ----------------------FWNLVVSALNADGVRSSYSSVGSNI--------FLSATGGEYGTDTPAMVTTDLPGCD  302 (600)
T ss_dssp             ----------------------SSEEEEEEECTTSSBCTTCCBCTTC--------CEEEECCSCSSSSCCEEEECCSSTT
T ss_pred             ----------------------CcceEEeeecCCCCEeecccCCcce--------eeccCCCCCCCCCcceeeecCCCcc
Confidence                                  0001112234557789999999987        8999987632        2121110


Q ss_pred             --------------------CCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccc
Q 042478          507 --------------------SKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEE  566 (954)
Q Consensus       507 --------------------~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~  566 (954)
                                          ......|..++|||||||||||++|||+|+||+|+|+|||++|++||++++..+.|+...
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~~L~~TA~~~d~~~~p~~~~  382 (600)
T 3hjr_A          303 MGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVMVS  382 (600)
T ss_dssp             SSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCSTTCCCEEEE
T ss_pred             ccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCccccc
Confidence                                001356899999999999999999999999999999999999999999998777664311


Q ss_pred             C---------------C---CCCCCCCCCCCCCccCcccccCCCccc
Q 042478          567 G---------------S---TRKEADPFDIGGGHVNPNKAMNPGLVY  595 (954)
Q Consensus       567 ~---------------~---~~~~~~~~~~GaG~vn~~~Al~pglvy  595 (954)
                      .               -   .....-...||+|+||+.+|++.+..+
T Consensus       383 ~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG~vDA~~aV~~A~~w  429 (600)
T 3hjr_A          383 YTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALELAANH  429 (600)
T ss_dssp             EECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHHHTTC
T ss_pred             ccccccccccccccCCcccccCCceEccccCCceecHHHHHHHhhcC
Confidence            0               0   011112457999999999999754433

>1wib_A 60S ribosomal protein L12; N-terminal domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Mus musculus} SCOP: d.47.1.1

Probab=99.97  E-value=9.9e-32  Score=236.18  Aligned_cols=88  Identities=25%  Similarity=0.393  Sum_probs=83.2

Q ss_pred             CCCCccceeeecCCCCCCccccccceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEE
Q 042478          783 SSTPRFLTVIAMAPPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEIT  862 (954)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~  862 (954)
                      ++||+     ||+|..          +++|||+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+||
T Consensus         5 ~~M~p-----k~~p~~----------~~~ikL~v~aG~A~p~pplgPaLG~~Glni~~f~k~fn~~T~~~kG~~ipV~it   69 (92)
T 1wib_A            5 SSGPP-----KFDPNE----------VKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLT   69 (92)
T ss_dssp             CCCCC-----CCCSSS----------CEEEEEEEETTCCCCSSCSHHHHTTTCSCHHHHHHHHHHHTTTTTTSEEEEEEE
T ss_pred             ccCCC-----CCCCCe----------EEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence            56777     777655          899999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEEeCCCHHHHHHHHhC
Q 042478          863 VYDDRSFTFILKTPPASVLLLKAAG  887 (954)
Q Consensus       863 v~~dr~~~~~~~~p~~s~li~k~~~  887 (954)
                      || ||+|+|++ +||+|+||+|++|
T Consensus        70 v~-drsf~~~v-~PpaS~Ll~k~~~   92 (92)
T 1wib_A           70 IQ-NRQAQIEV-VPSASALSGPSSG   92 (92)
T ss_dssp             EE-TTEEECCB-CSCCCCCCCCSCC
T ss_pred             Ee-CCeeEEEE-cCCHHHHHHHhcC
Confidence            99 99999999 9999999999875

>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A

Probab=99.95  E-value=2.1e-28  Score=206.46  Aligned_cols=71  Identities=65%  Similarity=1.057  Sum_probs=69.7

Q ss_pred             cceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCC
Q 042478          806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTP  876 (954)
Q Consensus       806 ~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p  876 (954)
                      |++.++|||+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+||||+||+|+|++++|
T Consensus         2 k~~~~~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~~G~~ipV~Itv~~drsf~~~~ktP   72 (72)
T 3cjs_B            2 KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTP   72 (72)
T ss_dssp             CCEEEEEEEEEETTCCCSSTTHHHHHHTTTCCHHHHHHHHHHHHGGGCSCEEEEEEEEETTSCEEEEECCC
T ss_pred             cceEEEEEEEEecCccCCCCCccchhcccCCCHHHHHHHHHHHHhhcCCCeEeEEEEEeCCCeEEEEEcCC
Confidence            68899999999999999999999999999999999999999999999999999999999999999999998

>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A

Probab=99.95  E-value=2.7e-28  Score=208.53  Aligned_cols=76  Identities=58%  Similarity=0.890  Sum_probs=73.4

Q ss_pred             EEEEEeCCCHHHHHHHHhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcC
Q 042478          869 FTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDP  944 (954)
Q Consensus       869 ~~~~~~~p~~s~li~k~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~  944 (954)
                      |+|++++||+||||+||||+++||++|+++++|+||++||+|||++|++|+++++|+++||+|+||||||||+|++
T Consensus         1 f~f~~ktPpas~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~~   76 (76)
T 1hc8_A            1 FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGIVVEN   76 (76)
T ss_dssp             -CCCCCCCCHHHHHHHHHTCSCCCSSTTTCCCEEECHHHHHHHHHHSGGGCCCSSHHHHHHHHHHHHHHHTEEEC-
T ss_pred             CEEEEcCCCHHHHHHHHhCCCCCCCCCCCcEeeeecHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCeeEeeC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999985

>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C

Probab=99.90  E-value=6.7e-25  Score=182.94  Aligned_cols=67  Identities=60%  Similarity=0.904  Sum_probs=66.1

Q ss_pred             eCCCHHHHHHHHhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccce
Q 042478          874 KTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGI  940 (954)
Q Consensus       874 ~~p~~s~li~k~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~  940 (954)
                      |+||+||||+||+|+++||++|+++++|+||++||||||++|++|+++++|+++||+|+||||||||
T Consensus         1 ktPpas~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi   67 (67)
T 1qa6_A            1 KTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGI   67 (67)
T ss_dssp             CCSCHHHHHHHHHTCSCCCCTTSSCCCCCCTTTHHHHHHHHHGGGCCCSSHHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHhCCCCCCCCCCCcccceecHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHhcCC
Confidence            6899999999999999999999999999999999999999999999999999999999999999998

>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A

Probab=99.89  E-value=8e-24  Score=250.63  Aligned_cols=100  Identities=28%  Similarity=0.404  Sum_probs=78.6

Q ss_pred             cceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhc---CCccEEEecccCCCCCCCccC-cccHHHHHHHHHHHCCCEE
Q 042478          219 LARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIH---DGVDVLSVSIGNEIPLFSYID-QRDSIAIGSFHAIAKGITV  294 (954)
Q Consensus       219 ~~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~---dgvdVINlSlG~~~~~~~~~~-~~d~~~~a~~~A~~~Gi~V  294 (954)
                      .+.||||+|+|+.|++.    ...+++++||+||++   ++++|||+|||... .. +.. +...+..++..|..+||+|
T Consensus       273 ~~~gvAp~a~i~~~~~~----~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e-~~-~~~~~~~~~~~~~~~a~~~Gi~v  346 (552)
T 1t1e_A          273 VAGALAPGAKIAVYFAP----NTDAGFLNAITTAVHDPTHKPSIVSISWGGPE-DS-WAPASIAAMNRAFLDAAALGVTV  346 (552)
T ss_dssp             HHHHHCTTSEEEEEECC----SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEG-GG-SCHHHHHHHHHHHHHHHHTTCEE
T ss_pred             hhhccCCCCeEEEEEcC----CCCchHHHHHHHHHhcccCCCCEEEecccCCc-cc-CCHHHHHHHHHHHHHHHhCCeEE
Confidence            35899999999999984    356789999999998   79999999999874 11 110 0135667777888999999


Q ss_pred             EEeCCCCCCCC--------CccccCCCceEEEcccccC
Q 042478          295 VSSAGNDGPVA--------QTIVNTAPWIITVGATTID  324 (954)
Q Consensus       295 V~AAGN~G~~~--------~t~~~~ap~vitVgAs~~d  324 (954)
                      |+||||+|...        ...++..|||++|||++..
T Consensus       347 v~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~~  384 (552)
T 1t1e_A          347 LAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLV  384 (552)
T ss_dssp             EEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEE
T ss_pred             EEecCCCCCCCCCCCCcccccCcccCCCEEEEeccccc
Confidence            99999999653        2445778999999997643

>1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A*

Probab=99.82  E-value=6.5e-21  Score=215.40  Aligned_cols=102  Identities=20%  Similarity=0.190  Sum_probs=80.8

Q ss_pred             eeccCCCcEEEEEEecCCCCChHHHHHHHHHHhc-CCccEEEecccCCCCCC--CccCcccHHHHHHHHHHHCCCEEEEe
Q 042478          221 RGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIH-DGVDVLSVSIGNEIPLF--SYIDQRDSIAIGSFHAIAKGITVVSS  297 (954)
Q Consensus       221 ~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~-dgvdVINlSlG~~~~~~--~~~~~~d~~~~a~~~A~~~Gi~VV~A  297 (954)
                      ..+||+|+++.|++.+..+++.++++++|+||++ ++++|||+|||......  ..+.  ..+..++..|..+||+||+|
T Consensus        90 g~~aP~a~~~~~~~~~~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~--~~~~~~~~~a~~~Gitvv~A  167 (372)
T 1ga6_A           90 GSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTL--QAEDRIFATAAAQGQTFSVS  167 (372)
T ss_dssp             HHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHH--HHHHHHHHHHHHTTCEEEEE
T ss_pred             hhcCCCCcEEEEEeCCCCCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHH--HHHHHHHHHHHhCCcEEEEE
Confidence            4578999999999987656788999999999998 89999999999863100  0111  45677777888999999999


Q ss_pred             CCCCCCCCC-------------ccccCCCceEEEcccccC
Q 042478          298 AGNDGPVAQ-------------TIVNTAPWIITVGATTID  324 (954)
Q Consensus       298 AGN~G~~~~-------------t~~~~ap~vitVgAs~~d  324 (954)
                      |||+|...+             ..++..|||++||+++..
T Consensus       168 sGd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~  207 (372)
T 1ga6_A          168 SGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY  207 (372)
T ss_dssp             CCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred             ECCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence            999997532             345678999999998754

>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P

Probab=99.02  E-value=3.1e-10  Score=106.27  Aligned_cols=80  Identities=15%  Similarity=0.150  Sum_probs=67.4

Q ss_pred             cCCCceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEccceeEEEEEcCHHHHHHHHcCCCeeEEEeCc
Q 042478           29 GATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNG  108 (954)
Q Consensus        29 ~~~~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~~~~nGfs~~l~~~~~~~L~~~p~V~~V~~~~  108 (954)
                      ...++.|||+|++...   ......|++|+.+++.+ +....+++|+|++.|+||+++|+++++++|+++|+|.+|+||+
T Consensus        34 ~~ip~~YIV~lk~~~~---~~~~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~  109 (114)
T 2w2n_P           34 WRLPGTYVVVLKEETH---LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDS  109 (114)
T ss_dssp             GEEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEE
T ss_pred             cCCCCcEEEEECCCCC---HHHHHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCc
Confidence            3457899999998642   33456899999998765 3356789999999999999999999999999999999999999


Q ss_pred             eeec
Q 042478          109 ILKL  112 (954)
Q Consensus       109 ~~~l  112 (954)
                      .++.
T Consensus       110 ~v~~  113 (114)
T 2w2n_P          110 SVFA  113 (114)
T ss_dssp             EEEE
T ss_pred             eEec
Confidence            8864

>3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A*

Probab=98.92  E-value=3.3e-09  Score=124.84  Aligned_cols=100  Identities=18%  Similarity=0.203  Sum_probs=63.2

Q ss_pred             eeccCCCcEEEEEEecCCCCChHHHHHHHHHHh--cCCccEEEecccCCCCCCCcc-CcccHHHHHHHHHHHCCCEEEEe
Q 042478          221 RGGAPLAHLAIYKACWDIGCTDADVLKAFDKAI--HDGVDVLSVSIGNEIPLFSYI-DQRDSIAIGSFHAIAKGITVVSS  297 (954)
Q Consensus       221 ~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai--~dgvdVINlSlG~~~~~~~~~-~~~d~~~~a~~~A~~~Gi~VV~A  297 (954)
                      .+++++..++.|-.... +...+.+++.+++..  .+-++|||+|||.... . +. .+...+..++..|..+||.|++|
T Consensus       262 ~a~~~~i~~~~~~~~g~-~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~-~-~~~~y~~~~~~~~~~~~~~Gitv~~A  338 (544)
T 3edy_A          262 MSAGANISTWVYSSPGR-HEGQEPFLQWLMLLSNESALPHVHTVSYGDDED-S-LSSAYIQRVNTELMKAAARGLTLLFA  338 (544)
T ss_dssp             HHHSTTSEEEEECCCSC-CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGG-G-SCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             hccCCCceEEEEecCCc-ccccccHHHHHHHHhccCCCCcEEEecCCCccc-c-cCHHHHHHHHHHHHHHHhCCeEEEEe
Confidence            34555555555533211 112344555555433  3568999999999751 1 11 01134555666788999999999


Q ss_pred             CCCCCCCC----------CccccCCCceEEEccccc
Q 042478          298 AGNDGPVA----------QTIVNTAPWIITVGATTI  323 (954)
Q Consensus       298 AGN~G~~~----------~t~~~~ap~vitVgAs~~  323 (954)
                      +||+|...          ...++..|||++||+++.
T Consensus       339 SGD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l  374 (544)
T 3edy_A          339 SGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF  374 (544)
T ss_dssp             CCSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred             cCCCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence            99999642          245578899999999874

>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B

Probab=98.83  E-value=1e-08  Score=89.65  Aligned_cols=74  Identities=14%  Similarity=0.140  Sum_probs=57.3

Q ss_pred             CCCceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEccceeEEEEEcCHHHHHHHHcCCCeeEEEeCce
Q 042478           30 ATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGI  109 (954)
Q Consensus        30 ~~~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~~~~nGfs~~l~~~~~~~L~~~p~V~~V~~~~~  109 (954)
                      ..++.|||.|++....  .   ..|.++++       ..+.++.|+|++ |+||+++|+++++++|+++|+|.+|+||+.
T Consensus         6 ~i~~~YIV~~k~~~~~--~---~~~~~~~~-------~~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~   72 (80)
T 3cnq_P            6 NGEKKYIVGFKQGFKS--C---AKKEDVIS-------EKGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKL   72 (80)
T ss_dssp             --CCEEEEEECTTCCS--H---HHHHHHHH-------TTTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCE
T ss_pred             cCCCCEEEEECCCCCh--H---HHHHHHHH-------HcCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcE
Confidence            4578999999986421  1   12333322       234689999998 999999999999999999999999999999


Q ss_pred             eeccccc
Q 042478          110 LKLHTTR  116 (954)
Q Consensus       110 ~~l~t~~  116 (954)
                      ++++++.
T Consensus        73 v~~~tt~   79 (80)
T 3cnq_P           73 YRALSAT   79 (80)
T ss_dssp             EEECCC-
T ss_pred             EEEeeec
Confidence            9998764

>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P

Probab=98.63  E-value=4.9e-08  Score=92.47  Aligned_cols=79  Identities=15%  Similarity=0.169  Sum_probs=61.3

Q ss_pred             CCCceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEccceeEEEEEcCHHHHHHHHcCCCeeEEEeCce
Q 042478           30 ATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGI  109 (954)
Q Consensus        30 ~~~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~~~~nGfs~~l~~~~~~~L~~~p~V~~V~~~~~  109 (954)
                      ..++.|||.|++...   ......|.+++.+.... .....++.|+|++.|+||+++|++++++.|+++|+|.+|++|+.
T Consensus        45 ~Ip~~YIV~~K~~~~---~~~~~~~~~~l~~~~~~-r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~  120 (124)
T 2qtw_A           45 RLPGTYVVVLKEETH---LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSS  120 (124)
T ss_dssp             EEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred             CCCCCEEEEECCCCC---HHHHHHHHHHHHHHHhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCce
Confidence            347899999998632   22345566666654321 11356899999999999999999999999999999999999998


Q ss_pred             eec
Q 042478          110 LKL  112 (954)
Q Consensus       110 ~~l  112 (954)
                      ++.
T Consensus       121 v~a  123 (124)
T 2qtw_A          121 VFA  123 (124)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            764

>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A

Probab=98.47  E-value=4.9e-07  Score=78.17  Aligned_cols=70  Identities=17%  Similarity=0.198  Sum_probs=57.5

Q ss_pred             ceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEc-cceeEEEEEcCHHHHHHHHcC--CCeeEEEeCce
Q 042478           33 NVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYK-HGFSGFAARLTKTQAEKIAEL--PGVVQVIPNGI  109 (954)
Q Consensus        33 ~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~-~~~nGfs~~l~~~~~~~L~~~--p~V~~V~~~~~  109 (954)
                      +.|||.|++..   +......|.+++...       +.++.|.|+ ..|+||+++++++++++|+++  |.|.+||+|+.
T Consensus         3 ~sYIV~lk~~~---~~~~~~~~~~~~~~~-------gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~   72 (76)
T 1v5i_B            3 GKFIVIFKNDV---SEDKIRETKDEVIAE-------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHV   72 (76)
T ss_dssp             EEEEEEECTTC---CHHHHHHHHHHHHHH-------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCE
T ss_pred             ceEEEEECCCC---CHHHHHHHHHHHHhh-------CCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcE
Confidence            68999999853   333456777777654       246899994 799999999999999999999  88999999998


Q ss_pred             eec
Q 042478          110 LKL  112 (954)
Q Consensus       110 ~~l  112 (954)
                      +++
T Consensus        73 v~~   75 (76)
T 1v5i_B           73 AHA   75 (76)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            764

>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}

Probab=98.45  E-value=4.6e-07  Score=91.97  Aligned_cols=90  Identities=16%  Similarity=0.130  Sum_probs=72.1

Q ss_pred             CCCccCCCCCCccc-------ccceEEEEecCCCC-chHHHHHHHHHHcCceEEEEEecCC-C-C---C--CCCcccceE
Q 042478          368 SANDCRQGSLNATL-------AAGKIILCFSRPDT-QDIQSAAISVTQAGGVGLIYAQFHT-D-G---L--DSCNLIPCI  432 (954)
Q Consensus       368 ~~~~C~~~~~~~~~-------v~Gkivl~~~~~g~-~~~~~k~~~~~~aGa~gvi~~n~~~-~-~---~--~~~~~ip~~  432 (954)
                      ....|.+.......       .+|||+|++|  |. |+|.+|..+++++||.++|+||+.. + .   +  +....||++
T Consensus        82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~R--G~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv  159 (194)
T 3icu_A           82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQR--GGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAI  159 (194)
T ss_dssp             CTTCCSTTCCBCCCBCTTSSCBCCEEEEEES--CTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEE
T ss_pred             CcCCCCCCccccCCcccccccCCCeEEEEEC--CCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEE
Confidence            46789886643222       4789999999  99 9999999999999999999999852 1 1   1  233579999


Q ss_pred             EeehhhHHHHHHHHhhcCCCccccCCC
Q 042478          433 KVNYEVGTQILSYIRRARSPIAKLSSP  459 (954)
Q Consensus       433 ~i~~~~g~~l~~~~~s~~~~~~~i~~~  459 (954)
                      +|+..+|+.|++++..+...+.+|...
T Consensus       160 ~Is~~~G~~L~~~L~~G~~Vtvti~vg  186 (194)
T 3icu_A          160 MIGNLKGTKILQSIQRGIQVTMVIEVG  186 (194)
T ss_dssp             EECHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             EECHHHHHHHHHHHHCCCeEEEEEECC
Confidence            999999999999999887776666543

>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B

Probab=97.00  E-value=0.0011  Score=55.07  Aligned_cols=63  Identities=21%  Similarity=0.245  Sum_probs=50.2

Q ss_pred             ceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEccceeEEEEEcCHHHHHHHHcCCCeeEEEeCceeec
Q 042478           33 NVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKL  112 (954)
Q Consensus        33 ~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~~~~nGfs~~l~~~~~~~L~~~p~V~~V~~~~~~~l  112 (954)
                      -+|||.+++.. ...               ......+.++.|+|. .+++++++|+++.++.|+++|+|.+|++|...+.
T Consensus         2 ~~~IV~f~~~~-~~~---------------~~i~~~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~a   64 (65)
T 2z30_B            2 IRVIVSVDKAK-FNP---------------HEVLGIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVL   64 (65)
T ss_dssp             EEEEEEECGGG-CCG---------------GGGGGGTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEEE
T ss_pred             eeEEEEEcCcc-hhH---------------HHHHHCCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEEc
Confidence            37999998641 100               012445778999997 8999999999999999999999999999988753

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*

Probab=96.36  E-value=0.0077  Score=68.95  Aligned_cols=69  Identities=13%  Similarity=0.225  Sum_probs=58.4

Q ss_pred             CCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC----C--CCCcccceEEeehhhHHHHHHHHh
Q 042478          377 LNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG----L--DSCNLIPCIKVNYEVGTQILSYIR  447 (954)
Q Consensus       377 ~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~----~--~~~~~ip~~~i~~~~g~~l~~~~~  447 (954)
                      +...+++|||||+.+  |.|.|..|..+++++||.|+|++++....    .  .....+|...++.++++.|+..+.
T Consensus       108 ~~~~dv~GkIvlv~~--g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~  182 (421)
T 2ek8_A          108 VAGKDLNGKIALIQR--GNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR  182 (421)
T ss_dssp             TTTSCCTTSEEEEEC--CSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred             cCCCCcCceEEEEeC--CCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence            444589999999999  89999999999999999999999986432    1  134678999999999999999884

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}

Probab=94.93  E-value=0.051  Score=62.56  Aligned_cols=76  Identities=22%  Similarity=0.345  Sum_probs=56.4

Q ss_pred             cccccceEEEEecCCCCch---------HHHH----HHHHHHcCceEEEEEecCCCC--------C---CCCcccceEEe
Q 042478          379 ATLAAGKIILCFSRPDTQD---------IQSA----AISVTQAGGVGLIYAQFHTDG--------L---DSCNLIPCIKV  434 (954)
Q Consensus       379 ~~~v~Gkivl~~~~~g~~~---------~~~k----~~~~~~aGa~gvi~~n~~~~~--------~---~~~~~ip~~~i  434 (954)
                      +.+++|||||+.+  +.|.         +..|    ..++.++||.|+|++++....        .   .....||++.|
T Consensus       124 ~~dvkGKIVlv~~--~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~I  201 (444)
T 3iib_A          124 AGSLNDKIAFIDA--KTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAI  201 (444)
T ss_dssp             TTTTTTCEEEECC--CCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEE
T ss_pred             ccccCccEEEEeC--CCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEe
Confidence            5689999999988  6663         4454    357999999999999864321        1   12356899999


Q ss_pred             ehhhHHHHHHHHhhcCCCcccc
Q 042478          435 NYEVGTQILSYIRRARSPIAKL  456 (954)
Q Consensus       435 ~~~~g~~l~~~~~s~~~~~~~i  456 (954)
                      +.++++.|...+..+...++++
T Consensus       202 s~~da~~L~~~l~~g~~~~v~l  223 (444)
T 3iib_A          202 SNPDADLINAMLKRDKEVVISL  223 (444)
T ss_dssp             CHHHHHHHHHHHTTTCCCEEEE
T ss_pred             cHHHHHHHHHHHhCCCCeEEEE
Confidence            9999999999887654443333

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A

Probab=94.60  E-value=0.036  Score=66.49  Aligned_cols=66  Identities=11%  Similarity=0.189  Sum_probs=54.8

Q ss_pred             ccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC-C---------------C-------------------
Q 042478          380 TLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG-L---------------D-------------------  424 (954)
Q Consensus       380 ~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~-~---------------~-------------------  424 (954)
                      .+++|||||+.+  |.|.+..|..+++++||.|+|+|++..+. .               .                   
T Consensus       128 vdv~GkIvlv~~--g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~  205 (640)
T 3kas_A          128 TPVNGSIVIVRA--GKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSR  205 (640)
T ss_dssp             SCCTTSEEEEES--CSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCS
T ss_pred             cccCCcEEEEec--CCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCccccccccccccc
Confidence            479999999999  89999999999999999999999975321 0               0                   


Q ss_pred             --CCcccceEEeehhhHHHHHHHHh
Q 042478          425 --SCNLIPCIKVNYEVGTQILSYIR  447 (954)
Q Consensus       425 --~~~~ip~~~i~~~~g~~l~~~~~  447 (954)
                        ....||+..|+.++++.|+..+.
T Consensus       206 ~~~~p~IP~~~Is~~~a~~Ll~~l~  230 (640)
T 3kas_A          206 SSGLPNIPVQTISRAAAEKLFGNME  230 (640)
T ss_dssp             SCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred             ccCCCCCCEEecCHHHHHHHHHHcc
Confidence              01358999999999999987664

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...

Probab=94.46  E-value=0.038  Score=67.00  Aligned_cols=68  Identities=18%  Similarity=0.261  Sum_probs=55.9

Q ss_pred             cccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCC-----C-------------C-----C------CC----
Q 042478          379 ATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHT-----D-------------G-----L------DS----  425 (954)
Q Consensus       379 ~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~-----~-------------~-----~------~~----  425 (954)
                      ..+++|||||+++  |.|.+.+|..+++++||.|+|+|++..     +             .     .      .+    
T Consensus       150 ~~~v~GkIvlv~~--G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TP  227 (707)
T 3fed_A          150 GINCTGKIVIARY--GKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTP  227 (707)
T ss_dssp             CCCCTTCEEEEEC--CSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCT
T ss_pred             CCCCCCeEEEEEC--CCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCC
Confidence            4579999999999  889999999999999999999998621     0             0     0      00    


Q ss_pred             ------------------CcccceEEeehhhHHHHHHHHhh
Q 042478          426 ------------------CNLIPCIKVNYEVGTQILSYIRR  448 (954)
Q Consensus       426 ------------------~~~ip~~~i~~~~g~~l~~~~~s  448 (954)
                                        ...||+..|+..+++.|+..+..
T Consensus       228 G~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g  268 (707)
T 3fed_A          228 GYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG  268 (707)
T ss_dssp             TSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred             CCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence                              14689999999999999988764

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.04  E-value=0.43  Score=44.37  Aligned_cols=52  Identities=15%  Similarity=0.229  Sum_probs=42.8

Q ss_pred             ceEEEEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCC
Q 042478          650 ETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNH  706 (954)
Q Consensus       650 ~~~tv~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~  706 (954)
                      .+.+.+.+++|+|+.+..|+.....    .++++|..-.+ ++||+..++|+|.+..
T Consensus        41 ~~~~~~~~l~N~g~~~~~f~~~~~~----~F~i~P~~g~L-~pg~~~~i~V~F~P~~   92 (122)
T 2ys4_A           41 YSTQKILLVRNIGNKNAVFHIKTCR----PFSIEPAIGTL-NVGESMQLEVEFEPQS   92 (122)
T ss_dssp             SCEEEEEEEECCSSSCEEEEEECCT----TEEEESSEEEE-CTTCEEEEEEEECCSS
T ss_pred             CeEEEEEEEEECCCCCEEEEEecCC----CeEEECCcCEE-CCCCEEEEEEEEEcCC
Confidence            4566678899999988888877543    47889999888 5899999999999865

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*

Probab=87.37  E-value=0.4  Score=54.93  Aligned_cols=52  Identities=23%  Similarity=0.188  Sum_probs=36.4

Q ss_pred             eeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCch
Q 042478          461 TVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMS  522 (954)
Q Consensus       461 ~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMA  522 (954)
                      ++......+.++.||++||..        ||+|||++|+++++.....  .....+.|+||-
T Consensus       176 ~VgA~~~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~g~g~--~~~~~~~G~s~~  227 (441)
T 1y9z_A          176 SVAAVDSNLDHAAFSQYTDQV--------EISGPGEAILSTVTVGEGR--LADITIGGQSYF  227 (441)
T ss_dssp             EEEEECTTCCBCTTSCCCTTE--------EEEEECSSEEEECSTTCEE--EEEEEETTEECG
T ss_pred             EEEEECCCCCCCccccCCCce--------EEEeccCCeeccccCCCcc--cceeeccccccc
Confidence            344456678899999999866        9999999999999752110  112356676653

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}

Probab=85.32  E-value=0.55  Score=60.02  Aligned_cols=25  Identities=28%  Similarity=0.460  Sum_probs=23.0

Q ss_pred             CCCCCceEEEEEeCCCCCCCCCcCC
Q 042478          136 SNMGEGTIIGIIDTGVWPESESFSD  160 (954)
Q Consensus       136 ~~~G~GVvVgVIDTGId~~Hp~f~d  160 (954)
                      .+.|+||+|||+||||||.+|.|.-
T Consensus        32 ~ydGrgv~iai~DtGVDP~a~glq~   56 (1354)
T 3lxu_X           32 EYDGRDVTIAIFDSGVDPRATGLET   56 (1354)
T ss_dssp             TCSSTTCEEEEEESCCCTTSTTSSC
T ss_pred             CCCCCccEEEEEeCCCCCCCCccee
Confidence            5789999999999999999999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	954
d1hc8a_	74	a.4.7.1 (A:) Ribosomal protein L11, C-terminal dom	1e-34
d1v6ca_	435	c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud	6e-34
d3cjsb1	70	d.47.1.1 (B:1-70) Ribosomal protein L11, N-termina	6e-33
d2gycg2	71	d.47.1.1 (G:2-72) Ribosomal protein L11, N-termina	9e-33
d1mmsa2	63	d.47.1.1 (A:8-70) Ribosomal protein L11, N-termina	8e-31
d1vqoi1	70	a.4.7.1 (I:71-140) Ribosomal protein L11, C-termin	1e-29
d1wiba_	92	d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mu	2e-29
d2gycg1	68	a.4.7.1 (G:73-140) Ribosomal protein L11, C-termin	4e-29
d3cjrb1	67	a.4.7.1 (B:71-137) Ribosomal protein L11, C-termin	1e-28
d1mmsa1	70	a.4.7.1 (A:71-140) Ribosomal protein L11, C-termin	1e-28
d1r6va_	671	c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni	1e-16
d1r6va_	671	c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni	2e-06
d1gcia_	269	c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId:	9e-16
d1gcia_	269	c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId:	9e-05
d1r0re_	274	c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls	1e-15
d1r0re_	274	c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls	4e-06
d1to2e_	281	c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie	2e-15
d1to2e_	281	c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie	3e-07
d2ixta1	309	c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus	2e-14
d1wmda2	318	c.41.1.1 (A:1-318) Alkaline serine protease kp-43,	1e-11
d1p8ja2	334	c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou	2e-11
d1p8ja2	334	c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou	8e-04
d2id4a2	339	c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak	7e-10
d2id4a2	339	c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak	4e-04
d1dbia_	280	c.41.1.1 (A:) Thermostable serine protease {Bacill	3e-09
d1dbia_	280	c.41.1.1 (A:) Thermostable serine protease {Bacill	2e-07
d2pwaa1	279	c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach	4e-08
d1thma_	279	c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar	3e-07
d1thma_	279	c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar	7e-06
d1ga6a_	369	c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse	2e-05
d1ga6a_	369	c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse	1e-04
d1t1ga_	357	c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac	6e-05
d1t1ga_	357	c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac	5e-04

>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 74

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein L11, C-terminal domain
family: Ribosomal protein L11, C-terminal domain
domain: Ribosomal protein L11, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  124 bits (313), Expect = 1e-34
 Identities = 43/74 (58%), Positives = 56/74 (75%)

Query: 870 TFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMR 929
           TFI KTPPA+VLL KAAG+E GS +P + KV  I  +++R IA  K+PDLN  SIE+AMR
Sbjct: 1   TFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMR 60

Query: 930 IIAGTAANMGIDID 943
           +I GTA +MGI ++
Sbjct: 61  MIEGTARSMGIVVE 74

>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease Apa1
species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]

 Score =  133 bits (335), Expect = 6e-34
 Identities = 75/484 (15%), Positives = 143/484 (29%), Gaps = 87/484 (17%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
                I IID+G        +   +               G  +   N N         +
Sbjct: 21  AGNRTICIIDSGYDRSHNDLNANNVTGTNNSGT-------GNWYQPGNNN----AHGTHV 69

Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIY--KACWDIGCTDADVLKAFDKAIHDG 256
            G +    A+   +EG+      G  P  +  I+  K   + G   +  L A      + 
Sbjct: 70  AGTI----AAIANNEGVV-----GVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNS 120

Query: 257 VDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWII 316
                V++       +  ++       +   +     ++++AGN G  + +   +   ++
Sbjct: 121 GGANVVTMSLGGSGSTTTERNALNTHYNNGVL-----LIAAAGNAGDSSYSYPASYDSVM 175

Query: 317 TVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGS 376
           +V A   +          +   + G    I       + +T  E    D           
Sbjct: 176 SVAAVDSNLDHAAFSQYTDQVEISGPGEAI------LSTVTVGEGRLADITIGGQS---- 225

Query: 377 LNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNY 436
                + G +      P       A I+ +  G +               N       N 
Sbjct: 226 ---YFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTV----------NGTSFSCGNM 272

Query: 437 EVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVL--KPDIVAP 494
                ++  +    S   +++S +          +   +S  P   +P ++    DI  P
Sbjct: 273 ANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVP 332

Query: 495 GVDILSAYPP-----------IGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPA 543
            V +  A              + ++  Q Y   +GTSM+ PHV+G+A L+ S H + S +
Sbjct: 333 SVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSAS 392

Query: 544 AIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYI 603
            +R+AL  TA      G                  G G +N   A             Y+
Sbjct: 393 QVRAALNATADDLSVAG-------------RDNQTGYGMINAVAAK-----------AYL 428

Query: 604 QFLC 607
              C
Sbjct: 429 DESC 432

>d3cjsb1 d.47.1.1 (B:1-70) Ribosomal protein L11, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 70

class: Alpha and beta proteins (a+b)
fold: Ribosomal L11/L12e N-terminal domain
superfamily: Ribosomal L11/L12e N-terminal domain
family: Ribosomal L11/L12e N-terminal domain
domain: Ribosomal protein L11, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score =  119 bits (300), Expect = 6e-33
 Identities = 44/69 (63%), Positives = 53/69 (76%)

Query: 806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYD 865
           KKV+ ++KL L AGKATPAPPVGPALG  G NIM F K +NA TA+    ++PVEIT+Y 
Sbjct: 2   KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYA 61

Query: 866 DRSFTFILK 874
           DRSFTF+ K
Sbjct: 62  DRSFTFVTK 70

>d2gycg2 d.47.1.1 (G:2-72) Ribosomal protein L11, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 71

class: Alpha and beta proteins (a+b)
fold: Ribosomal L11/L12e N-terminal domain
superfamily: Ribosomal L11/L12e N-terminal domain
family: Ribosomal L11/L12e N-terminal domain
domain: Ribosomal protein L11, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  119 bits (299), Expect = 9e-33
 Identities = 44/71 (61%), Positives = 52/71 (73%), Gaps = 1/71 (1%)

Query: 806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVY 864
           KKV   +KL + AG A P+PPVGPALG +GVNIM FCK +NA+T   + G  IPV ITVY
Sbjct: 1   KKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVY 60

Query: 865 DDRSFTFILKT 875
            DRSFTF+ KT
Sbjct: 61  ADRSFTFVTKT 71

>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 63

class: Alpha and beta proteins (a+b)
fold: Ribosomal L11/L12e N-terminal domain
superfamily: Ribosomal L11/L12e N-terminal domain
family: Ribosomal L11/L12e N-terminal domain
domain: Ribosomal protein L11, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score =  113 bits (284), Expect = 8e-31
 Identities = 47/62 (75%), Positives = 53/62 (85%)

Query: 812 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTF 871
           IKL L AGKATPAPPVGPALG  GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTF
Sbjct: 2   IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTF 61

Query: 872 IL 873
           I+
Sbjct: 62  II 63

>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 70

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein L11, C-terminal domain
family: Ribosomal protein L11, C-terminal domain
domain: Ribosomal protein L11, C-terminal domain
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  110 bits (276), Expect = 1e-29
 Identities = 22/69 (31%), Positives = 42/69 (60%)

Query: 875 TPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGT 934
            PP + L+   AG E GS +P++  V  ++++Q++ IA +K PDL    + +A + + GT
Sbjct: 2   VPPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGT 61

Query: 935 AANMGIDID 943
             ++G+ I+
Sbjct: 62  CTSLGVTIE 70

>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus musculus) [TaxId: 10090]} Length = 92

class: Alpha and beta proteins (a+b)
fold: Ribosomal L11/L12e N-terminal domain
superfamily: Ribosomal L11/L12e N-terminal domain
family: Ribosomal L11/L12e N-terminal domain
domain: 60S ribosomal protein L12
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (275), Expect = 2e-29
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 7/95 (7%)

Query: 793 AMAPPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADK 852
           +  PPK          + ++ L    G+      + P +G  G++      D    T D 
Sbjct: 5   SSGPPKF-----DPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDW 59

Query: 853 AGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAG 887
            G  I V++T+  +R    I   P AS L   ++G
Sbjct: 60  KGLRITVKLTIQ-NRQAQ-IEVVPSASALSGPSSG 92

>d2gycg1 a.4.7.1 (G:73-140) Ribosomal protein L11, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein L11, C-terminal domain
family: Ribosomal protein L11, C-terminal domain
domain: Ribosomal protein L11, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  108 bits (271), Expect = 4e-29
 Identities = 33/68 (48%), Positives = 45/68 (66%)

Query: 876 PPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTA 935
           PPA+VLL KAAG++ GS  P + KVGKI+  QL+ IA  K  D+    IE+  R I GTA
Sbjct: 1   PPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTA 60

Query: 936 ANMGIDID 943
            +MG+ ++
Sbjct: 61  RSMGLVVE 68

>d3cjrb1 a.4.7.1 (B:71-137) Ribosomal protein L11, C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 67

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein L11, C-terminal domain
family: Ribosomal protein L11, C-terminal domain
domain: Ribosomal protein L11, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score =  107 bits (268), Expect = 1e-28
 Identities = 38/67 (56%), Positives = 54/67 (80%)

Query: 875 TPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGT 934
           TPPAS L+ KAAG+EKG+  P ++KVG+IT EQ+  IA +K+PDLN T +E+A R+IAG+
Sbjct: 1   TPPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGS 60

Query: 935 AANMGID 941
           A +MG++
Sbjct: 61  ARSMGVE 67

>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 70

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein L11, C-terminal domain
family: Ribosomal protein L11, C-terminal domain
domain: Ribosomal protein L11, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score =  107 bits (269), Expect = 1e-28
 Identities = 42/69 (60%), Positives = 56/69 (81%)

Query: 874 KTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAG 933
           KTPPAS LL KAAG+EKGS +PK++ VGK+T +Q+  IA  K+PDLN  S+E+AM+II G
Sbjct: 1   KTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEG 60

Query: 934 TAANMGIDI 942
           TA +MGI++
Sbjct: 61  TAKSMGIEV 69

>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Fervidolysin
species: Fervidobacterium pennivorans [TaxId: 93466]

 Score = 82.0 bits (201), Expect = 1e-16
 Identities = 36/133 (27%), Positives = 49/133 (36%), Gaps = 25/133 (18%)

Query: 482 MSPAVLKPDIVAPGVDILSAYPPIGSKDIQG------------YALLSGTSMSCPHVAGI 529
            S       + APGV ILS  P   S   +G            Y    GTSM+ PHV G+
Sbjct: 331 FSSRSDGVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGV 390

Query: 530 AALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAM 589
            A++     +  P  IR  L  TA     +G +              D G G V  + A+
Sbjct: 391 VAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWD-------------HDTGYGLVKLDAAL 437

Query: 590 NPGLVYDITVEDY 602
              L     VE++
Sbjct: 438 QGPLPTQGGVEEF 450

>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Fervidolysin
species: Fervidobacterium pennivorans [TaxId: 93466]

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 47/341 (13%), Positives = 82/341 (24%), Gaps = 72/341 (21%)

Query: 43  KYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVV 102
            Y D   + K         +  K   +   +       +G   +       K   L G+ 
Sbjct: 37  GYNDRSEVDKIVKA-----VNGKVVLELPQIKVVSIKLNGMTVKQAY-DKIKALALKGIR 90

Query: 103 QVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTESNM------------------------ 138
            V P+   +L      +     Y      L++ +                          
Sbjct: 91  YVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEE 150

Query: 139 --GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNR--KLIGA 194
             G   I+ ++DTGV         + +         +        +  S        I A
Sbjct: 151 ASGTNIIVAVVDTGVDGTHPDLEGQVIAGYRPAFDEELPAGTDSSYGGSAGTHVAGTIAA 210

Query: 195 RWFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGC-------TDADVLK 247
           +   KGI                    G AP A +       D           D  V  
Sbjct: 211 KKDGKGI-------------------VGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAA 251

Query: 248 AFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSA-GNDGPVAQ 306
               A   G  V++ S       +       ++     +A+  G+ +V SA  N      
Sbjct: 252 GIIWATDHGAKVMNHS-------WGGWGYSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHH 304

Query: 307 TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIG 347
                 P +I V A              +        + +G
Sbjct: 305 QYPAGYPGVIQVAALDYYGGTFRVAGFSS----RSDGVSVG 341

>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus lentus [TaxId: 1467]

 Score = 76.1 bits (186), Expect = 9e-16
 Identities = 46/136 (33%), Positives = 59/136 (43%), Gaps = 30/136 (22%)

Query: 454 AKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGY 513
           A+ ++   V     +   ASFS  G           DIVAPGV++ S YP         Y
Sbjct: 163 ARYANAMAVGATDQNNNRASFSQYGAG--------LDIVAPGVNVQSTYPG------STY 208

Query: 514 ALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEA 573
           A L+GTSM+ PHVAG AAL+K  +  WS   IR+ L  TA+  G+               
Sbjct: 209 ASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN------------- 255

Query: 574 DPFDIGGGHVNPNKAM 589
                G G VN   A 
Sbjct: 256 ---LYGSGLVNAEAAT 268

>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus lentus [TaxId: 1467]

 Score = 43.0 bits (100), Expect = 9e-05
 Identities = 33/222 (14%), Positives = 70/222 (31%), Gaps = 33/222 (14%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
           G G  + ++DTG+                  P               +            
Sbjct: 23  GSGVKVAVLDTGISTH---------------PDLNIRGGASFVPGEPSTQDGNGHGTHVA 67

Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGV 257
             I  + N+                 P A L   K     G  + + + +  + A ++G+
Sbjct: 68  GTIAALNNSIGVLGVA----------PSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGM 117

Query: 258 DVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIIT 317
            V ++S+G+  P  +              A ++G+ VV+++GN G  + +        + 
Sbjct: 118 HVANLSLGSPSPSATLEQAV-------NSATSRGVLVVAASGNSGAGSISYPARYANAMA 170

Query: 318 VGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYS 359
           VGAT  +    +    G    +    +++     G T  + +
Sbjct: 171 VGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLN 212

>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus subtilis, carlsberg [TaxId: 1423]

 Score = 75.8 bits (185), Expect = 1e-15
 Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 30/128 (23%)

Query: 461 TVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTS 520
            V     +   ASFSS G         + +++APG  + S YP         YA L+GTS
Sbjct: 175 AVGAVDSNSNRASFSSVGA--------ELEVMAPGAGVYSTYPT------NTYATLNGTS 220

Query: 521 MSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGG 580
           M+ PHVAG AALI S H + S + +R+ L +TA+  G+                 F  G 
Sbjct: 221 MASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS----------------FYYGK 264

Query: 581 GHVNPNKA 588
           G +N   A
Sbjct: 265 GLINVEAA 272

>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus subtilis, carlsberg [TaxId: 1423]

 Score = 47.2 bits (111), Expect = 4e-06
 Identities = 33/203 (16%), Positives = 63/203 (31%), Gaps = 36/203 (17%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
           G    + ++DTG+       +  G                G  F +           +  
Sbjct: 23  GANVKVAVLDTGIQASHPDLNVVG----------------GASFVAGEA--------YNT 58

Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGV 257
            G     + +             G AP   L   K     G  + + ++   + A  +G+
Sbjct: 59  DGNGHGTHVAGTVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGM 118

Query: 258 DVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIV----NTAP 313
           DV++                 ++     +A A+G+ VV++AGN G    T          
Sbjct: 119 DVIN-------MSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYD 171

Query: 314 WIITVGATTIDRAFPTAITLGNH 336
            +I VGA   +    +  ++G  
Sbjct: 172 SVIAVGAVDSNSNRASFSSVGAE 194

>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]

 Score = 75.3 bits (184), Expect = 2e-15
 Identities = 43/120 (35%), Positives = 56/120 (46%), Gaps = 30/120 (25%)

Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
           + ASFSS GP        + D++APGV I S  P         Y   +GTSM+ PHVAG 
Sbjct: 185 QRASFSSVGP--------ELDVMAPGVSIQSTLPG------NKYGAYNGTSMASPHVAGA 230

Query: 530 AALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAM 589
           AALI S H +W+   +RS+L  T ++ G                D F  G G +N   A 
Sbjct: 231 AALILSKHPNWTNTQVRSSLENTTTKLG----------------DSFYYGKGLINVQAAA 274

>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]

 Score = 50.7 bits (120), Expect = 3e-07
 Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 35/203 (17%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
           G    + +ID+G+          G                G     S  N        F 
Sbjct: 23  GSNVKVAVIDSGIDSSHPDLKVAG----------------GASMVPSETN-------PFQ 59

Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGV 257
                  + +        +    G AP A L   K     G    + ++   + AI + +
Sbjct: 60  DNNSHGTHVAGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNM 119

Query: 258 DVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIV----NTAP 313
           DV+++S+G      +     D        A+A G+ VV++AGN+G    +         P
Sbjct: 120 DVINMSLGGPSGSAALKAAVD-------KAVASGVVVVAAAGNEGTSGSSSTVGYPGKYP 172

Query: 314 WIITVGATTIDRAFPTAITLGNH 336
            +I VGA        +  ++G  
Sbjct: 173 SVIAVGAVDSSNQRASFSSVGPE 195

>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Sphericase
species: Bacillus sphaericus [TaxId: 1421]

 Score = 73.4 bits (178), Expect = 2e-14
 Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 12/97 (12%)

Query: 488 KPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRS 547
             +I APG  + S +         GY  +SGTSM+ PHV+G+AA I + +   S   +RS
Sbjct: 224 DIEISAPGSSVYSTWYN------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRS 277

Query: 548 ALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVN 584
            L   A      G      G      D +  G G   
Sbjct: 278 NLQERAKSVDIKG------GYGAAIGDDYASGFGFAR 308

>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease kp-43, N-terminal domain
species: Bacillus sp. KSM-KP43 [TaxId: 109322]

 Score = 64.5 bits (155), Expect = 1e-11
 Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 24/123 (19%)

Query: 479 PNSMSPAVLKPDIVAPGVDILSAYPP------IGSKDIQGYALLSGTSMSCPHVAGIAAL 532
                   +KPD++APG  ILSA           +     YA + GTSM+ P VAG  A 
Sbjct: 208 RGPTKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQ 267

Query: 533 IKSLHRD-----WSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNK 587
           ++            P+ +++AL+  A+  G    N              + G G V  +K
Sbjct: 268 LREHFVKNRGITPKPSLLKAALIAGAADIGLGYPN-------------GNQGWGRVTLDK 314

Query: 588 AMN 590
           ++N
Sbjct: 315 SLN 317

>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Furin, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.4 bits (155), Expect = 2e-11
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 517 SGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPF 576
           +GTS S P  AGI AL    +++ +   ++  +V T+     +  +    G  RK +  +
Sbjct: 257 TGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSY 316

Query: 577 DIGGGHVNPNKAMN 590
             G G ++    + 
Sbjct: 317 --GYGLLDAGAMVA 328

>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Furin, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.2 bits (92), Expect = 8e-04
 Identities = 17/163 (10%), Positives = 38/163 (23%), Gaps = 10/163 (6%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
           G G ++ I+D G+       +      A    + +    +      ++       A    
Sbjct: 36  GHGIVVSILDDGIEKNHPDLAGNYDPGASFDVNDQDPDPQPRYTQMNDNRHGTRCAGEVA 95

Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVD 258
               + +            G  R        A+      +      +      +   G +
Sbjct: 96  AVANNGVCGVGVAYNARIGG-VRMLDGEVTDAVEARSLGLNPNHIHIY-----SASWGPE 149

Query: 259 VLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGND 301
               ++     L      R             G   V ++GN 
Sbjct: 150 DDGKTVDGPARLAEEAFFRGVSQ----GRGGLGSIFVWASGNG 188

>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Kexin, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 7e-10
 Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 517 SGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPF 576
            GTS + P  AG+  L+   + + +   ++   + +A     +    + + +  K+    
Sbjct: 261 GGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHR 320

Query: 577 DIGGGHVNPNKAMN 590
             G G ++ +K + 
Sbjct: 321 -YGFGKIDAHKLIE 333

>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Kexin, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 4e-04
 Identities = 25/168 (14%), Positives = 44/168 (26%), Gaps = 23/168 (13%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
           G G +  I+D G+  E+E   D    +     +      K    +               
Sbjct: 45  GAGVVAAIVDDGLDYENEDLKDNFCAEGSWDFNDNTNLPKPRLSDDY------------- 91

Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVD 258
                   A     +        G    A ++  +       T  D   +    + D  D
Sbjct: 92  ---HGTRCAGEIAAKKGNNFCGVGVGYNAKISGIRILSG-DITTEDEAASLIYGL-DVND 146

Query: 259 VLSVSIGNEIPLFSYIDQRDS-----IAIGSFHAIAKGITVVSSAGND 301
           + S S G            D      +   +    +KG   V ++GN 
Sbjct: 147 IYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNG 194

>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermostable serine protease
species: Bacillus sp., AK.1 [TaxId: 1409]

 Score = 57.3 bits (137), Expect = 3e-09
 Identities = 37/185 (20%), Positives = 57/185 (30%), Gaps = 29/185 (15%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
             G  I +IDTGV         K                          +          
Sbjct: 30  SSGQEIAVIDTGVDYTHPDLDGK---------------------VIKGYDFVDNDYDPMD 68

Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGV 257
                   A     E   A    G AP   +   +A    G  T +D+  A   A   G 
Sbjct: 69  LNNHGTHVAGIAAAETNNATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGA 128

Query: 258 DVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIIT 317
           +V+++S+G +    +  +          +A  KG  VV++AGN+G        +   +I 
Sbjct: 129 EVINLSLGCDCHTTTLENAV-------NYAWNKGSVVVAAAGNNGSSTTFEPASYENVIA 181

Query: 318 VGATT 322
           VGA  
Sbjct: 182 VGAVD 186

>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermostable serine protease
species: Bacillus sp., AK.1 [TaxId: 1409]

 Score = 51.5 bits (122), Expect = 2e-07
 Identities = 50/215 (23%), Positives = 74/215 (34%), Gaps = 33/215 (15%)

Query: 378 NATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYE 437
           N  + A + +         DI  A I    +G   +  +        +         N  
Sbjct: 96  NTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVNYAWNKG 155

Query: 438 VGTQILSYIRRARSPIAKLSSPET--VIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPG 495
                 +    + +     S      V       R+ASFS+ G           D+VAPG
Sbjct: 156 SVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLASFSNYGTW--------VDVVAPG 207

Query: 496 VDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQ 555
           VDI+S            YA +SGTSM+ PHVAG+AAL+ S  +  +   IR A+  TA +
Sbjct: 208 VDIVSTITG------NRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADK 259

Query: 556 TGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN 590
               G                    G +N   A+ 
Sbjct: 260 ISGTGT---------------YFKYGRINSYNAVT 279

>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Proteinase K
species: Fungus (Tritirachium album), strain limber [TaxId: 37998]

 Score = 53.6 bits (127), Expect = 4e-08
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 511 QGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQ 555
                +SGTSM+ PHVAG+AA + +L +  + +A R  +  TA++
Sbjct: 215 GSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANK 258

>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermitase
species: Thermoactinomyces vulgaris [TaxId: 2026]

 Score = 50.9 bits (120), Expect = 3e-07
 Identities = 36/187 (19%), Positives = 54/187 (28%), Gaps = 29/187 (15%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
           G G  I I+DTGV       + K                          +     +    
Sbjct: 29  GSGAKIAIVDTGVQSNHPDLAGK---------------------VVGGWDFVDNDSTPQN 67

Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGV 257
                   A         +    G AP A +   +   + G  T   V      A   G 
Sbjct: 68  GNGHGTHCAGIAAAVTNNSTGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGA 127

Query: 258 DVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIIT 317
            V+S+S+G  +         +       +A  KG  VV++AGN G  A          I 
Sbjct: 128 KVISLSLGGTVGNSGLQQAVN-------YAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIA 180

Query: 318 VGATTID 324
           V +T  +
Sbjct: 181 VASTDQN 187

>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermitase
species: Thermoactinomyces vulgaris [TaxId: 2026]

 Score = 46.6 bits (109), Expect = 7e-06
 Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 23/121 (19%)

Query: 469 PRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAG 528
              ++  +   +S S      D+ APG  I S YP         YA LSGTSM+ PHVAG
Sbjct: 180 AVASTDQNDNKSSFSTYGSWVDVAAPGSSIYSTYPT------STYASLSGTSMATPHVAG 233

Query: 529 IAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKA 588
           +A L+ S  +  S + IR+A+  TA                +          G VN  KA
Sbjct: 234 VAGLLAS--QGRSASNIRAAIENTA---------------DKISGTGTYWAKGRVNAYKA 276

Query: 589 M 589
           +
Sbjct: 277 V 277

>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Pseudomonas sp., sedolisin [TaxId: 306]

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 30/237 (12%), Positives = 60/237 (25%), Gaps = 20/237 (8%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
              T +GII  G   ++     +      +                 N      G+    
Sbjct: 24  AANTTVGIITIGGVSQTLQDLQQFTSANGLAS--------------VNTQTIQTGSSNGD 69

Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGC-TDADVLKAFDKAIHD-G 256
                      + D    +    G A  A   +     D     +  + +AF++A+ D  
Sbjct: 70  YSDDQQGQGEWDLD----SQSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNV 125

Query: 257 VDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWII 316
             V++VS+G      +      +       A A+G T   S+G++G              
Sbjct: 126 AKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGST 185

Query: 317 TVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCR 373
              +         A+           +     V +                S  + +
Sbjct: 186 YSVSWPASSPNVIAVGGTTLYTTSAGAYSNETVWNEGLDSNGKLWATGGGYSVYESK 242

>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Pseudomonas sp., sedolisin [TaxId: 306]

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 36/321 (11%), Positives = 84/321 (26%), Gaps = 21/321 (6%)

Query: 279 SIAI---GSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGN 335
           ++ I   G      + +   +SA     V    + T             +      +   
Sbjct: 28  TVGIITIGGVSQTLQDLQQFTSANGLASVNTQTIQTGSSNGDYSDDQQGQGEWDLDSQSI 87

Query: 336 HQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDT 395
                G    +       +    +        + +D     +N +L   +          
Sbjct: 88  VGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANAD-GTL 146

Query: 396 QDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYI-----RRAR 450
           Q       +    G    + +        +    P               +         
Sbjct: 147 QAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 206

Query: 451 SPIAKLSSPETVIGDLVSPRVASFSSRGPNS---MSPAVLKPDIVAPG------VDILSA 501
           +  A   S ETV  + +      +++ G  S     P+        PG      +   +A
Sbjct: 207 TTSAGAYSNETVWNEGLDSNGKLWATGGGYSVYESKPSWQSVVSGTPGRRLLPDISFDAA 266

Query: 502 YPPIGS-KDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDG 560
                   +      + GTS++ P   G+ A ++S +   +     +A   +A  +    
Sbjct: 267 QGTGALIYNYGQLQQIGGTSLASPIFVGLWARLQSANS--NSLGFPAASFYSAISSTPSL 324

Query: 561 MNIFEEGSTRKEADPFDIGGG 581
           ++  + G+       ++ G G
Sbjct: 325 VHDVKSGNNGYGGYGYNAGTG 345

>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]

 Score = 43.9 bits (102), Expect = 6e-05
 Identities = 13/102 (12%), Positives = 21/102 (20%), Gaps = 7/102 (6%)

Query: 458 SPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLS 517
           S    +           S+            PD+                       ++ 
Sbjct: 222 SRIFPLPSWQERANVPPSANPGAGSG--RGVPDVAGNADPATGYEVV----IDGETTVIG 275

Query: 518 GTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTD 559
           GTS   P  A + A I           +   L     +   D
Sbjct: 276 GTSAVAPLFAALVARINQ-KLGKPVGYLNPTLYQLPPEVFHD 316

>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]

 Score = 40.9 bits (94), Expect = 5e-04
 Identities = 41/253 (16%), Positives = 71/253 (28%), Gaps = 28/253 (11%)

Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
           G+G  I II  G   +  S +          P    +   G                   
Sbjct: 23  GQGQCIAIIALGGGYDETSLAQYFASLGVSAPQVVSVSVDGA------------------ 64

Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVD 258
                      + +  L   +A   AP A +A+Y A          +  A          
Sbjct: 65  TNQPTGDPNGPDGEVELDIEVAGALAPGAKIAVYFAPNTDAGFLNAITTAVH-DPTHKPS 123

Query: 259 VLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNT------- 311
           ++S+S G             ++      A A G+TV+++AG+ G                
Sbjct: 124 IVSISWGGPED-SWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPA 182

Query: 312 -APWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSAN 370
            +P+++  G T +  +                    G VS  F   ++ ER    P +  
Sbjct: 183 ASPYVLACGGTRLVASAGRIERETVWNDGPDGGSTGGGVSRIFPLPSWQERANVPPSANP 242

Query: 371 DCRQGSLNATLAA 383
               G     +A 
Sbjct: 243 GAGSGRGVPDVAG 255

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	954
d1r6va_	671	Fervidolysin {Fervidobacterium pennivorans [TaxId:	100.0
d1v6ca_	435	Alkaline serine protease Apa1 {Pseudoalteromonas s	100.0
d1dbia_	280	Thermostable serine protease {Bacillus sp., AK.1 [	100.0
d1r0re_	274	Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1	100.0
d1to2e_	281	Subtilisin {Bacillus amyloliquefaciens, Novo/BPN'	100.0
d1thma_	279	Thermitase {Thermoactinomyces vulgaris [TaxId: 202	100.0
d1gcia_	269	Subtilisin {Bacillus lentus [TaxId: 1467]}	100.0
d2pwaa1	279	Proteinase K {Fungus (Tritirachium album), strain	100.0
d2ixta1	309	Sphericase {Bacillus sphaericus [TaxId: 1421]}	100.0
d1wmda2	318	Alkaline serine protease kp-43, N-terminal domain	100.0
d1p8ja2	334	Furin, N-terminal domain {Mouse (Mus musculus) [Ta	100.0
d2id4a2	339	Kexin, N-terminal domain {Baker's yeast (Saccharom	100.0
d1wiba_	92	60S ribosomal protein L12 {Mouse (Mus musculus) [T	99.95
d1t1ga_	357	Serine-carboxyl proteinase, SCP {Bacillus novosp.	99.94
d3cjsb1	70	Ribosomal protein L11, N-terminal domain {Thermus	99.94
d1hc8a_	74	Ribosomal protein L11, C-terminal domain {Bacillus	99.93
d1mmsa2	63	Ribosomal protein L11, N-terminal domain {Thermoto	99.93
d2gycg2	71	Ribosomal protein L11, N-terminal domain {Escheric	99.92
d1mmsa1	70	Ribosomal protein L11, C-terminal domain {Thermoto	99.91
d1vqoi1	70	Ribosomal protein L11, C-terminal domain {Archaeon	99.91
d1ga6a_	369	Serine-carboxyl proteinase, SCP {Pseudomonas sp.,	99.91
d1xbpg1	72	Ribosomal protein L11, C-terminal domain {Deinococ	99.9
d3cjrb1	67	Ribosomal protein L11, C-terminal domain {Thermus	99.87
d2gycg1	68	Ribosomal protein L11, C-terminal domain {Escheric	99.87
d1scjb_	71	Subtilisin prosegment {Bacillus subtilis [TaxId: 1	98.56
d1v5ib1	72	Proteinase A inhibitor 1, POIA1 {Oyster mushroom (	98.43
d1de4c2	193	Transferrin receptor ectodomain, apical domain {Hu	96.77
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	95.62
d3bi1a2	233	Glutamate carboxypeptidase II {Human (Homo sapiens	95.48

>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Fervidolysin
species: Fervidobacterium pennivorans [TaxId: 93466]

Probab=100.00  E-value=2.2e-47  Score=462.22  Aligned_cols=356  Identities=25%  Similarity=0.249  Sum_probs=256.8

Q ss_pred             CCCceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEccceeEEEEEcCHHH----HHH--HHcCCCeeE
Q 042478           30 ATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQ----AEK--IAELPGVVQ  103 (954)
Q Consensus        30 ~~~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~~~~nGfs~~l~~~~----~~~--L~~~p~V~~  103 (954)
                      ..++.|||.+++..         .-.++++++       ..++++.+. .++.+.++++..+    .+.  +..+|+|++
T Consensus        29 ~~~~~~iV~~k~~~---------~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~   91 (671)
T d1r6va_          29 YTEGKILVGYNDRS---------EVDKIVKAV-------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRY   91 (671)
T ss_dssp             BCTTEEEEEESSHH---------HHHHHHHHH-------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEE
T ss_pred             cCCCeEEEEECCcc---------CHHHHHHhc-------CCEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcCCCceE
Confidence            34778999998741         122333322       345777776 6677788876432    222  235899999


Q ss_pred             EEeCceeeccccc----ccc-----------------------ccccccccCccccccCCCCCCceEEEEEeCCCCCCCC
Q 042478          104 VIPNGILKLHTTR----SWE-----------------------FMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESE  156 (954)
Q Consensus       104 V~~~~~~~l~t~~----s~~-----------------------~~gl~~~~~~~~~w~~~~~G~GVvVgVIDTGId~~Hp  156 (954)
                      |+|+..+++....    .+.                       .|+++.. ++...|....+|+||+|||||||||++||
T Consensus        92 vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i-~~~~a~~~~~tG~gV~VaViDtGvd~~Hp  170 (671)
T d1r6va_          92 VEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAI-GVTQQLWEEASGTNIIVAVVDTGVDGTHP  170 (671)
T ss_dssp             EECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHT-TCCHHHHHHCSCTTCEEEEEESCCBTTSG
T ss_pred             ECcceeEeeccccccCCCccccccccccccccccCcCccccccCcChhhc-CccHHHHhcCCCCCCEEEEEcCCcCCCCh
Confidence            9999766542110    000                       1222211 23334444569999999999999999999


Q ss_pred             CcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhcccccccc-----ceeccCCCcEEE
Q 042478          157 SFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGL-----ARGGAPLAHLAI  231 (954)
Q Consensus       157 ~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G~-----~~GvAP~A~L~~  231 (954)
                      +|.++...      .|+-..           +....    ...+..+.+|||| |++|++++.     +.||||+|+|++
T Consensus       171 dl~~~~~~------~~~~~~-----------~~~~~----~~~~~~d~~gHGT-~VAGiiaa~~~~~g~~GvAp~a~l~~  228 (671)
T d1r6va_         171 DLEGQVIA------GYRPAF-----------DEELP----AGTDSSYGGSAGT-HVAGTIAAKKDGKGIVGVAPGAKIMP  228 (671)
T ss_dssp             GGTTTBCC------EEEGGG-----------TEEEC----TTCBCCTTCSHHH-HHHHHHHCCCSSSSCCCSCTTSEEEE
T ss_pred             hhcCCccc------Cccccc-----------cCCCC----CCCcCcccCCCCc-cccceeeeeccccceeeecCcceEEE
Confidence            99765322      111000           00000    0011111227999 999987653     689999999999


Q ss_pred             EEEecCC------C-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCC
Q 042478          232 YKACWDI------G-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPV  304 (954)
Q Consensus       232 yKv~~~~------g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~  304 (954)
                      +|++++.      + ...+++++||+||+++|++|||||||+..    + .  +.+..++..|.++|+++|+||||+|.+
T Consensus       229 ~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~----~-~--~~~~~ai~~a~~~gv~vV~aAGN~~~~  301 (671)
T d1r6va_         229 IVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG----Y-S--YTMKEAFDYAMEHGVVMVVSAGNNTSD  301 (671)
T ss_dssp             EESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC----C-C--HHHHHHHHHHHHTTCEEEEECCSCSSS
T ss_pred             EEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEeccccccc----C-C--hHHHHHHHHHHhccCcEEEEEecCCCC
Confidence            9999642      3 56778999999999999999999999874    2 2  567888999999999999999999876


Q ss_pred             C-CccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCccccc
Q 042478          305 A-QTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAA  383 (954)
Q Consensus       305 ~-~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~  383 (954)
                      . ...++..|++|+|||++.+.                                                          
T Consensus       302 ~~~~~Pa~~~~vi~Vga~~~~~----------------------------------------------------------  323 (671)
T d1r6va_         302 SHHQYPAGYPGVIQVAALDYYG----------------------------------------------------------  323 (671)
T ss_dssp             CCCCBTTTSTTCEEEEEEEEET----------------------------------------------------------
T ss_pred             ccccCCccCCceEEEEEecCCC----------------------------------------------------------
Confidence            4 45667889999999864221                                                          


Q ss_pred             ceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceee
Q 042478          384 GKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVI  463 (954)
Q Consensus       384 Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~  463 (954)
                                                                                                      
T Consensus       324 --------------------------------------------------------------------------------  323 (671)
T d1r6va_         324 --------------------------------------------------------------------------------  323 (671)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCC------------CCCCceEeecCCCchhHHHHHHHH
Q 042478          464 GDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGS------------KDIQGYALLSGTSMSCPHVAGIAA  531 (954)
Q Consensus       464 ~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~------------~~~~~y~~~SGTSMAaP~VAG~aA  531 (954)
                         ....+++||+|||.+        ||+|||++|+++++....            ..++.|..++|||||||||||++|
T Consensus       324 ---~~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~y~~~sGTS~AaP~VaG~aA  392 (671)
T d1r6va_         324 ---GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVA  392 (671)
T ss_dssp             ---TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHH
T ss_pred             ---CcceeeeccCCCCCc--------eEEecCCCeEeecCCCCccccccccccccccCCCeeeeecCHHHHHHHHHHHHH
Confidence               012368899999986        999999999999875311            114689999999999999999999


Q ss_pred             HHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccCCCcc
Q 042478          532 LIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLV  594 (954)
Q Consensus       532 Ll~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~pglv  594 (954)
                      ||+|++|+|+|++||++|++||++++..+             .+..||||+||+.+|++..+.
T Consensus       393 Ll~~~~p~lt~~~v~~~L~~tA~~~~~~g-------------~~~~~G~G~vna~~Av~~~~~  442 (671)
T d1r6va_         393 VLLQKFPNAKPWQIRKLLENTAFDFNGNG-------------WDHDTGYGLVKLDAALQGPLP  442 (671)
T ss_dssp             HHHHHCTTCCHHHHHHHHHHHCBCSSSSS-------------CBTTTBTCBCCHHHHHHCCCC
T ss_pred             HHHHHCCCCCHHHHHHHHHhhCccCCCCC-------------CCCCcccChhCHHHHhhCcCC
Confidence            99999999999999999999999764332             356899999999999986543

>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease Apa1
species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]

Probab=100.00  E-value=2.4e-44  Score=415.85  Aligned_cols=365  Identities=21%  Similarity=0.256  Sum_probs=236.8

Q ss_pred             ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478          129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS  208 (954)
Q Consensus       129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G  208 (954)
                      ++.+|.  .+|+||+|||||||||++||+|+++...      .|        ++...  +      ..+  +..+.+|||
T Consensus        13 a~~~~~--~~G~gv~VaviDtGid~~Hp~~~~~~~~------~~--------~~~~~--~------~~~--~~~d~~gHG   66 (435)
T d1v6ca_          13 ATVLSD--SQAGNRTICIIDSGYDRSHNDLNANNVT------GT--------NNSGT--G------NWY--QPGNNNAHG   66 (435)
T ss_dssp             GGGSCC--TTGGGCEEEEEESCCCTTSTTTTTSEEE------EC--------CCTTS--C------CTT--CCCSSCCHH
T ss_pred             cchhhh--cCCCCcEEEEEcCCCCCCChhhccCeee------ee--------ccCCC--C------CCC--CCCCCCCcH
Confidence            445665  4899999999999999999999764321      01        01000  0      000  011223899


Q ss_pred             hhhcccccccc-----ceeccC--CCcEEEEEEecCCC-CChHHHHHHHHHHhc-CCccEEEecccCCCCCCCccCcccH
Q 042478          209 TNTDEGLAAGL-----ARGGAP--LAHLAIYKACWDIG-CTDADVLKAFDKAIH-DGVDVLSVSIGNEIPLFSYIDQRDS  279 (954)
Q Consensus       209 Ta~v~G~a~G~-----~~GvAP--~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~-dgvdVINlSlG~~~~~~~~~~~~d~  279 (954)
                      | ||+|+++|.     +.||||  +++|+.+|+++... +...++++||++|++ +|++|||+|||...    + .  ..
T Consensus        67 T-hvAgiiag~~~~~g~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~g~~~----~-~--~~  138 (435)
T d1v6ca_          67 T-HVAGTIAAIANNEGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSG----S-T--TT  138 (435)
T ss_dssp             H-HHHHHHHCCCSSSBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCCBSC----C-B--HH
T ss_pred             H-HHHHHHhccCCCCceEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEecccCCCC----C-C--HH
Confidence            9 999987763     689999  89999999998764 677889999999986 69999999999875    2 1  45


Q ss_pred             HHHHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEE--eeeeeeccCcCCc-eeee
Q 042478          280 IAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVL--WGQSIDIGKVSHG-FTGL  356 (954)
Q Consensus       280 ~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~--~g~s~~~~~~~~~-~~~l  356 (954)
                      +..++..+.++|+++|+||||+|+...++++.++++|+|||++.+.........+....+  .|..+......+. .+.-
T Consensus       139 ~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG~~i~st~~~g~~~~~~  218 (435)
T d1v6ca_         139 ERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLAD  218 (435)
T ss_dssp             HHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEECSSEEEECSTTCEEEEE
T ss_pred             HHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecccceeeeeecCCCcccc
Confidence            677888999999999999999999988888999999999998877654433333322211  1111111000000 0000


Q ss_pred             e-ecc----ccc------cCCCCC---------------CccC--CCCCCcccccceEEEEecCC---CCchHHHHHHHH
Q 042478          357 T-YSE----RIA------FDPDSA---------------NDCR--QGSLNATLAAGKIILCFSRP---DTQDIQSAAISV  405 (954)
Q Consensus       357 ~-~~~----~~~------~~~~~~---------------~~C~--~~~~~~~~v~Gkivl~~~~~---g~~~~~~k~~~~  405 (954)
                      . ...    ...      ......               ..|.  ...+...++.+++.++.+..   ............
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (435)
T d1v6ca_         219 ITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKAC  298 (435)
T ss_dssp             EEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCSSSSCTHHHHHHHH
T ss_pred             cccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceeeccCCccccceeeeeceee
Confidence            0 000    000      000000               0000  11122334556666665421   122344444455


Q ss_pred             HHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCC--
Q 042478          406 TQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMS--  483 (954)
Q Consensus       406 ~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~--  483 (954)
                      ...++.+++.++                                                         ++.+|....  
T Consensus       299 ~~~~~~~~~~~~---------------------------------------------------------~~~~~~~~~~~  321 (435)
T d1v6ca_         299 KTAGAKGIIVYS---------------------------------------------------------NSALPGLQNPF  321 (435)
T ss_dssp             HHTTCSEEEEEC---------------------------------------------------------CSSSCSCCCCE
T ss_pred             cccCCcceEEec---------------------------------------------------------cCCCCCcCCcc
Confidence            555555544443                                                         222332211  


Q ss_pred             CCCcCCeEEecCCceEecCCCCC-----------CCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 042478          484 PAVLKPDIVAPGVDILSAYPPIG-----------SKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTT  552 (954)
Q Consensus       484 ~~~lKPDI~APG~~I~sa~~~~~-----------~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~T  552 (954)
                      ....||||.+||..|.+++....           ......|..|||||||||||||++|||+|+||+|+|++||++||+|
T Consensus       322 ~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~s~~~vk~~L~~T  401 (435)
T d1v6ca_         322 LVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNAT  401 (435)
T ss_dssp             EECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred             ccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhh
Confidence            24578899999988876532110           0013579999999999999999999999999999999999999999


Q ss_pred             cccCCCCCccccccCCCCCCCCCCCCCCCccCcccccCCCccccCCchhHHHhhhc
Q 042478          553 ASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCF  608 (954)
Q Consensus       553 A~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~pglvyd~~~~dy~~flc~  608 (954)
                      |++++             ..++++.||+|+||+.+|+           |||...|.
T Consensus       402 A~~~~-------------~~~~~~~~G~G~vn~~~A~-----------~~l~~~~~  433 (435)
T d1v6ca_         402 ADDLS-------------VAGRDNQTGYGMINAVAAK-----------AYLDESCT  433 (435)
T ss_dssp             SBCCS-------------SSSCBTTTBTCBCCHHHHH-----------HHHHHCTT
T ss_pred             CcccC-------------CCCCCCCcccceecHHHHH-----------HHHHhcCC
Confidence            99653             2345789999999999995           48887774

>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermostable serine protease
species: Bacillus sp., AK.1 [TaxId: 1409]

Probab=100.00  E-value=3.6e-43  Score=382.37  Aligned_cols=251  Identities=32%  Similarity=0.384  Sum_probs=201.3

Q ss_pred             CccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccC-C--CCC
Q 042478          128 SSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKG-I--MDM  204 (954)
Q Consensus       128 ~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~-~--~~~  204 (954)
                      +++.+|+++.+|+||+|||||||||++||+|.++...                             .++|... .  .+.
T Consensus        19 ~~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~~~~-----------------------------~~~~~~~~~~~~d~   69 (280)
T d1dbia_          19 YTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIK-----------------------------GYDFVDNDYDPMDL   69 (280)
T ss_dssp             THHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTTEEE-----------------------------EEETTTTBSCCCCS
T ss_pred             CHHHHHhccCCCCCeEEEEEccCcCCCChhhcCCeee-----------------------------cccccCCCCccccc
Confidence            4678999999999999999999999999999753211                             1111111 1  112


Q ss_pred             CCchhhhcccccccc------ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcc
Q 042478          205 INASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQR  277 (954)
Q Consensus       205 ~G~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~  277 (954)
                      +|||| |++|++++.      +.||||+|+|+.+|+++..+ +...++++||+||+++|+||||+|||...     ..  
T Consensus        70 ~~HGT-~vag~i~~~~~~~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~iin~S~g~~~-----~~--  141 (280)
T d1dbia_          70 NNHGT-HVAGIAAAETNNATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC-----HT--  141 (280)
T ss_dssp             SSHHH-HHHHHHHCCCSSSSSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC-----CC--
T ss_pred             ccccc-ceeEeeeccccCCCceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHHHHcCCcEeeccccccc-----cc--
Confidence            27999 999976553      68999999999999998765 78899999999999999999999999875     11  


Q ss_pred             cHHHHHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeee
Q 042478          278 DSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLT  357 (954)
Q Consensus       278 d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~  357 (954)
                      +....+...|.++|+++|+||||+|......++..|++|+|||.+.                                  
T Consensus       142 ~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~----------------------------------  187 (280)
T d1dbia_         142 TTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ----------------------------------  187 (280)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT----------------------------------
T ss_pred             hhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecC----------------------------------
Confidence            4566778889999999999999999877777788899999997431                                  


Q ss_pred             eccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehh
Q 042478          358 YSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYE  437 (954)
Q Consensus       358 ~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~  437 (954)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (280)
T d1dbia_         188 --------------------------------------------------------------------------------  187 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeec
Q 042478          438 VGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLS  517 (954)
Q Consensus       438 ~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~S  517 (954)
                                                    .+.++.||++||..        |++|||++|++....      ..|..++
T Consensus       188 ------------------------------~~~~a~~S~~g~~~--------d~~apg~~i~~~~~~------~~~~~~s  223 (280)
T d1dbia_         188 ------------------------------YDRLASFSNYGTWV--------DVVAPGVDIVSTITG------NRYAYMS  223 (280)
T ss_dssp             ------------------------------TSCBCTTBCCSTTC--------CEEEECSSEEEEETT------TEEEEEC
T ss_pred             ------------------------------CCCcCCcCCCCCcc--------cccCCccceeccccC------cceeccC
Confidence                                          24468899999976        999999999999876      7899999


Q ss_pred             CCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478          518 GTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN  590 (954)
Q Consensus       518 GTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~  590 (954)
                      |||||||||||++|||+|.  .+++.+||++|++||+++..               +...||+|+||+.+||+
T Consensus       224 GTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~---------------~~~~~G~G~ln~~~Al~  279 (280)
T d1dbia_         224 GTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG---------------TGTYFKYGRINSYNAVT  279 (280)
T ss_dssp             SHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT---------------BTTTBSSEECCHHHHHT
T ss_pred             CccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC---------------CCCcCCCCeEcHHHHcC
Confidence            9999999999999999995  45899999999999986532               23479999999999986

>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus subtilis, carlsberg [TaxId: 1423]

Probab=100.00  E-value=9.4e-43  Score=377.73  Aligned_cols=249  Identities=31%  Similarity=0.456  Sum_probs=205.4

Q ss_pred             ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccC---CCCCC
Q 042478          129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKG---IMDMI  205 (954)
Q Consensus       129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~---~~~~~  205 (954)
                      ++.+|.++++|+||+|||||||||++||+|+...                               .++|..+   ..+.+
T Consensus        13 ~~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~~~~-------------------------------~~~~~~~~~~~~d~~   61 (274)
T d1r0re_          13 ADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVG-------------------------------GASFVAGEAYNTDGN   61 (274)
T ss_dssp             HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEEE-------------------------------EEECSTTCCTTCCSS
T ss_pred             hHHHHHcCCCCCCeEEEEECCCCCCCChhhcccC-------------------------------CccccCCCCCCCCcc
Confidence            5689999999999999999999999999995210                               0111110   11122


Q ss_pred             Cchhhhcccccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccH
Q 042478          206 NASTNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDS  279 (954)
Q Consensus       206 G~GTa~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~  279 (954)
                      |||| |++|++.+.     ..|+||+|+|+.+|+++..+ +..+++++|++++.++|++|+|+|||...    . .  ..
T Consensus        62 gHGT-~vAgii~~~~~~~~~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~~~~i~n~S~~~~~----~-~--~~  133 (274)
T d1r0re_          62 GHGT-HVAGTVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS----G-S--TA  133 (274)
T ss_dssp             SHHH-HHHHHHHCCSSSSBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSS----C-C--HH
T ss_pred             cccc-ccccccccccccccccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCceecccccccc----c-h--hh
Confidence            7999 999987653     68999999999999998776 67889999999999999999999999875    1 1  44


Q ss_pred             HHHHHHHHHHCCCEEEEeCCCCCCCCC----ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceee
Q 042478          280 IAIGSFHAIAKGITVVSSAGNDGPVAQ----TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTG  355 (954)
Q Consensus       280 ~~~a~~~A~~~Gi~VV~AAGN~G~~~~----t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~  355 (954)
                      ......+|.++++++|+||||+|....    ..+...|++|+|||.+.                                
T Consensus       134 ~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~--------------------------------  181 (274)
T d1r0re_         134 MKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS--------------------------------  181 (274)
T ss_dssp             HHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT--------------------------------
T ss_pred             hhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECC--------------------------------
Confidence            566778899999999999999986532    33456788999997432                                


Q ss_pred             eeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEee
Q 042478          356 LTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVN  435 (954)
Q Consensus       356 l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~  435 (954)
                                                                                                      
T Consensus       182 --------------------------------------------------------------------------------  181 (274)
T d1r0re_         182 --------------------------------------------------------------------------------  181 (274)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEe
Q 042478          436 YEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYAL  515 (954)
Q Consensus       436 ~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~  515 (954)
                                                      .+.++.||++||.+        ||+|||++|+++.+.      +.|..
T Consensus       182 --------------------------------~~~~~~~s~~g~~~--------di~APG~~i~~~~~~------~~~~~  215 (274)
T d1r0re_         182 --------------------------------NSNRASFSSVGAEL--------EVMAPGAGVYSTYPT------NTYAT  215 (274)
T ss_dssp             --------------------------------TSCBCTTCCCSTTE--------EEEEECSSEEEEETT------TEEEE
T ss_pred             --------------------------------CCCcccccCCCCCE--------EEEecCCCcccccCC------CCeEe
Confidence                                            23467899999854        999999999999887      78999


Q ss_pred             ecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478          516 LSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN  590 (954)
Q Consensus       516 ~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~  590 (954)
                      ++|||||||+|||++|||+|++|+|++++||++|++||++++                +.+.||+|+||+.+|++
T Consensus       216 ~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~----------------~~~~~G~G~ln~~~A~~  274 (274)
T d1r0re_         216 LNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG----------------SSFYYGKGLINVEAAAQ  274 (274)
T ss_dssp             ECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS----------------CHHHHTTCBCCHHHHTC
T ss_pred             ecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC----------------CCCceEcCeecHHHhcC
Confidence            999999999999999999999999999999999999998642                24579999999999985

>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]

Probab=100.00  E-value=1.3e-42  Score=378.02  Aligned_cols=254  Identities=32%  Similarity=0.459  Sum_probs=208.7

Q ss_pred             CccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCc
Q 042478          128 SSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINA  207 (954)
Q Consensus       128 ~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~  207 (954)
                      +++.+|.++++|+||+|||||||||++||+|+.....           +.....                .......+||
T Consensus        12 ~a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~~~~-----------~~~~~~----------------~~~~~~~~~H   64 (281)
T d1to2e_          12 KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGA-----------SMVPSE----------------TNPFQDNNSH   64 (281)
T ss_dssp             THHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEEEEE-----------ECCTTC----------------CCTTCCSSSH
T ss_pred             CcHHHHHCCCCCCCeEEEEECCCCCCCChhhhhcCCc-----------cccCCC----------------CCCCcCcCCC
Confidence            4678999999999999999999999999999632100           000000                0001111279


Q ss_pred             hhhhcccccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHH
Q 042478          208 STNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIA  281 (954)
Q Consensus       208 GTa~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~  281 (954)
                      || +++|+++|.     ..|+||+|+|+.+|++..++ +..+++++||+|+++.+++|||+|||...     ..  ..+.
T Consensus        65 GT-~vAgiiag~~~~~~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~~~~v~n~S~g~~~-----~~--~~~~  136 (281)
T d1to2e_          65 GT-HVAGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS-----GS--AALK  136 (281)
T ss_dssp             HH-HHHHHHHCCSSSSSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSC-----CC--HHHH
T ss_pred             Cc-eeecccccCCCCCCcceeecccEEEEEEEeCCCCCcCHHHHHHHHHHHHhccccccccccCCCc-----ch--HHHH
Confidence            99 999987764     67899999999999998776 67889999999999999999999999874     22  5678


Q ss_pred             HHHHHHHHCCCEEEEeCCCCCCCCC----ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeee
Q 042478          282 IGSFHAIAKGITVVSSAGNDGPVAQ----TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLT  357 (954)
Q Consensus       282 ~a~~~A~~~Gi~VV~AAGN~G~~~~----t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~  357 (954)
                      .+++.+.++|+++|+||||+|....    ..++..+++|+|||.+.                                  
T Consensus       137 ~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~----------------------------------  182 (281)
T d1to2e_         137 AAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS----------------------------------  182 (281)
T ss_dssp             HHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT----------------------------------
T ss_pred             HHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecC----------------------------------
Confidence            8888999999999999999986532    34466788999997431                                  


Q ss_pred             eccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehh
Q 042478          358 YSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYE  437 (954)
Q Consensus       358 ~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~  437 (954)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (281)
T d1to2e_         183 --------------------------------------------------------------------------------  182 (281)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeec
Q 042478          438 VGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLS  517 (954)
Q Consensus       438 ~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~S  517 (954)
                                                    .+.++.||++||..        |+.|||.+|+++.+.      +.|..++
T Consensus       183 ------------------------------~~~~~~~S~~G~~~--------d~~apG~~i~s~~~~------~~~~~~~  218 (281)
T d1to2e_         183 ------------------------------SNQRASFSSVGPEL--------DVMAPGVSIQSTLPG------NKYGAYN  218 (281)
T ss_dssp             ------------------------------TSCBCTTCCCSTTC--------CEEEECSSEEEEETT------TEEEEEC
T ss_pred             ------------------------------CCCCCcccCCCCCc--------cccCCCCCceeecCC------CeeEccc
Confidence                                          13467899999987        999999999999887      7899999


Q ss_pred             CCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478          518 GTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN  590 (954)
Q Consensus       518 GTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~  590 (954)
                      |||||||+|||++|||+|++|+|++++||++|++||+++.                +...||+|+||+.+|++
T Consensus       219 GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~----------------~~~~~G~G~ld~~~A~~  275 (281)
T d1to2e_         219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG----------------DSFYYGKGLINVQAAAQ  275 (281)
T ss_dssp             BHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS----------------CHHHHTTCBCCHHHHTS
T ss_pred             CcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC----------------CCCCcccCcccHHHHHh
Confidence            9999999999999999999999999999999999999642                13468999999999998

>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermitase
species: Thermoactinomyces vulgaris [TaxId: 2026]

Probab=100.00  E-value=2.7e-42  Score=375.02  Aligned_cols=250  Identities=32%  Similarity=0.408  Sum_probs=209.0

Q ss_pred             CccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCC---CC
Q 042478          128 SSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIM---DM  204 (954)
Q Consensus       128 ~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~---~~  204 (954)
                      ++..+|+.+ +|+||+|||||||||++||+|.++.                             +..++|.++..   +.
T Consensus        19 ~a~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~~-----------------------------~~~~~~~~~~~~~~d~   68 (279)
T d1thma_          19 QAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGKV-----------------------------VGGWDFVDNDSTPQNG   68 (279)
T ss_dssp             THHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTTE-----------------------------EEEEETTTTBSCCCCS
T ss_pred             CHHHHHhcc-CCCCcEEEEEcCCCCCCChhhcCCe-----------------------------eccccccccCcccccc
Confidence            467899987 9999999999999999999997432                             11222222111   12


Q ss_pred             CCchhhhcccccccc------ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcc
Q 042478          205 INASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQR  277 (954)
Q Consensus       205 ~G~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~  277 (954)
                      +|||| |++|++++.      ..|+||+|+|+.+|++...+ +...++++||+++++.+++|+|+|||...     ..  
T Consensus        69 ~~HGT-~vag~i~~~~~~~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~i~n~S~G~~~-----~~--  140 (279)
T d1thma_          69 NGHGT-HCAGIAAAVTNNSTGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV-----GN--  140 (279)
T ss_dssp             SSHHH-HHHHHHHCCCSSSSSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS-----CC--
T ss_pred             ccccc-ccceeeeeccCCCccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCCceeccccCccc-----cc--
Confidence            27999 898876553      68999999999999998776 78889999999999999999999999875     22  


Q ss_pred             cHHHHHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeee
Q 042478          278 DSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLT  357 (954)
Q Consensus       278 d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~  357 (954)
                      .....+...+.++|+++|+|+||+|......+...|++|+|||++.                                  
T Consensus       141 ~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~----------------------------------  186 (279)
T d1thma_         141 SGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ----------------------------------  186 (279)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT----------------------------------
T ss_pred             hhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccC----------------------------------
Confidence            4567788889999999999999999888888888899999998532                                  


Q ss_pred             eccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehh
Q 042478          358 YSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYE  437 (954)
Q Consensus       358 ~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~  437 (954)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (279)
T d1thma_         187 --------------------------------------------------------------------------------  186 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeec
Q 042478          438 VGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLS  517 (954)
Q Consensus       438 ~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~S  517 (954)
                                                    .+.++.||++|++.        ||.|||.+|+++.+.      +.|..++
T Consensus       187 ------------------------------~~~~~~~S~~G~~~--------di~Apg~~i~~~~~~------~~~~~~s  222 (279)
T d1thma_         187 ------------------------------NDNKSSFSTYGSWV--------DVAAPGSSIYSTYPT------STYASLS  222 (279)
T ss_dssp             ------------------------------TSCBCTTCCCCTTC--------CEEEECSSEEEEETT------TEEEEEC
T ss_pred             ------------------------------CCCCccccCCCceE--------EEeeeeeccccccCc------ccccccC
Confidence                                          23468899999987        999999999999987      7899999


Q ss_pred             CCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478          518 GTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN  590 (954)
Q Consensus       518 GTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~  590 (954)
                      |||||||||||++|||+|.+|  ++.+||++|++||+++.               ..+..||+|+||+.+||+
T Consensus       223 GTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~---------------g~~~~~G~G~vn~~~Av~  278 (279)
T d1thma_         223 GTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKIS---------------GTGTYWAKGRVNAYKAVQ  278 (279)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCT---------------TBTTTBSSEECCHHHHHH
T ss_pred             CcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCC---------------CCCCcceeeeEcHHHhhC
Confidence            999999999999999999765  78999999999998653               124579999999999985

>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus lentus [TaxId: 1467]

Probab=100.00  E-value=6.8e-42  Score=370.04  Aligned_cols=251  Identities=31%  Similarity=0.425  Sum_probs=208.0

Q ss_pred             ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478          129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS  208 (954)
Q Consensus       129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G  208 (954)
                      +..+|..+++|+||+||||||||| +||+|+.....                +|...            .....+.+|||
T Consensus        13 ~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~~~~----------------~~~~~------------~~~~~d~~~HG   63 (269)
T d1gcia_          13 APAAHNRGLTGSGVKVAVLDTGIS-THPDLNIRGGA----------------SFVPG------------EPSTQDGNGHG   63 (269)
T ss_dssp             HHHHHHTTCSCTTCEEEEEESCCC-CCTTCCEEEEE----------------ECSTT------------CCSCSCSSSHH
T ss_pred             cHHHHhCCCCCCCeEEEEECCCCC-CCcccCccccc----------------cccCC------------CCCccccchhh
Confidence            678999999999999999999998 89999532100                01000            00011123799


Q ss_pred             hhhcccccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHH
Q 042478          209 TNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAI  282 (954)
Q Consensus       209 Ta~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~  282 (954)
                      | |++|++.+.     ..|+||+|+|+.+|++...+ +...++.+|+++++.+++++||+|||...  .   .  .....
T Consensus        64 T-~vAgii~~~~~~~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~in~s~g~~~--~---~--~~~~~  135 (269)
T d1gcia_          64 T-HVAGTIAALNNSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS--P---S--ATLEQ  135 (269)
T ss_dssp             H-HHHHHHHCCCSSSBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSS--C---C--HHHHH
T ss_pred             h-eecccccccCCCccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhcccccccccccccc--c---c--chHHH
Confidence            9 999976643     57999999999999998776 67788999999999999999999999875  1   1  45566


Q ss_pred             HHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeecccc
Q 042478          283 GSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERI  362 (954)
Q Consensus       283 a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~  362 (954)
                      +...+.++|+++|+||||+|.+....++..|++|+|||++.                                       
T Consensus       136 a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~---------------------------------------  176 (269)
T d1gcia_         136 AVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ---------------------------------------  176 (269)
T ss_dssp             HHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT---------------------------------------
T ss_pred             HHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEcc---------------------------------------
Confidence            77889999999999999999887788888999999998432                                       


Q ss_pred             ccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHH
Q 042478          363 AFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQI  442 (954)
Q Consensus       363 ~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l  442 (954)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (269)
T d1gcia_         177 --------------------------------------------------------------------------------  176 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCch
Q 042478          443 LSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMS  522 (954)
Q Consensus       443 ~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMA  522 (954)
                                               .+.++.||++||..        ||+|||.++.++.+.      ..|..++|||||
T Consensus       177 -------------------------~~~~~~~S~~G~~~--------di~Apg~~~~~~~~~------~~~~~~sGTS~A  217 (269)
T d1gcia_         177 -------------------------NNNRASFSQYGAGL--------DIVAPGVNVQSTYPG------STYASLNGTSMA  217 (269)
T ss_dssp             -------------------------TSCBCTTCCCSTTE--------EEEEECSSEEEEETT------TEEEEECSHHHH
T ss_pred             -------------------------CCCcccccCCCCCc--------eEEEeeecceeccCC------CceEecCCcchH
Confidence                                     13467899999976        999999999999887      789999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478          523 CPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN  590 (954)
Q Consensus       523 aP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~  590 (954)
                      ||+|||++|||+|++|+|++++||++|++||++++                ++..||+|+||+.+|++
T Consensus       218 aP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g----------------~~~~~G~G~ln~~~Avk  269 (269)
T d1gcia_         218 TPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG----------------STNLYGSGLVNAEAATR  269 (269)
T ss_dssp             HHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS----------------CHHHHTTCBCCHHHHTC
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC----------------CCCCcccCeEcHHHhcC
Confidence            99999999999999999999999999999999653                13468999999999985

>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Proteinase K
species: Fungus (Tritirachium album), strain limber [TaxId: 37998]

Probab=100.00  E-value=2.9e-38  Score=343.28  Aligned_cols=241  Identities=28%  Similarity=0.327  Sum_probs=192.8

Q ss_pred             ccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhh
Q 042478          131 NLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTN  210 (954)
Q Consensus       131 ~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa  210 (954)
                      ..|....+|+||+|||||||||++||+|.++...         .                    ..+.....+.+|||| 
T Consensus        22 ~~~~~~~tG~Gv~VaViDsGid~~Hpdf~g~~~~---------~--------------------~~~~~~~~d~~gHGT-   71 (279)
T d2pwaa1          22 TYYYDESAGQGSCVYVIDTGIEASHPEFEGRAQM---------V--------------------KTYYYSSRDGNGHGT-   71 (279)
T ss_dssp             CEECCTTTTTTEEEEEEESCCCTTCGGGTTCEEE---------E--------------------EESSSCSSCSSSHHH-
T ss_pred             cceecCCCCCCeEEEEECcCCCCCChhhcCCcee---------c--------------------cCCCCCcccccCccc-
Confidence            3333456999999999999999999999754211         0                    001111112237999 


Q ss_pred             hccccccccceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcC-------CccEEEecccCCCCCCCccCcccHHHH
Q 042478          211 TDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHD-------GVDVLSVSIGNEIPLFSYIDQRDSIAI  282 (954)
Q Consensus       211 ~v~G~a~G~~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~d-------gvdVINlSlG~~~~~~~~~~~~d~~~~  282 (954)
                      |++|+++|...|+||+|+|+.+|++.... ...+++..+++++...       +++|+|+|||...  .      +.+..
T Consensus        72 ~VAgiia~~~~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~s~g~~~--~------~~~~~  143 (279)
T d2pwaa1          72 HCAGTVGSRTYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGY--S------SSVNS  143 (279)
T ss_dssp             HHHHHHHCTTTCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEEC--C------HHHHH
T ss_pred             cccccccccccccCCCccccceeeecCCcccccccccchhheecccccccccccccceeccCCCcc--c------cccch
Confidence            99999999999999999999999998765 6778889999998764       3469999999864  2      56778


Q ss_pred             HHHHHHHCCCEEEEeCCCCCCCCCc-cccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccc
Q 042478          283 GSFHAIAKGITVVSSAGNDGPVAQT-IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSER  361 (954)
Q Consensus       283 a~~~A~~~Gi~VV~AAGN~G~~~~t-~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~  361 (954)
                      ++..+.++|+++|+||||++.+... .+...|++|+|||++.                                      
T Consensus       144 ~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~--------------------------------------  185 (279)
T d2pwaa1         144 AAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR--------------------------------------  185 (279)
T ss_dssp             HHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT--------------------------------------
T ss_pred             hhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEee--------------------------------------
Confidence            8889999999999999999976433 4567789999997431                                      


Q ss_pred             cccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHH
Q 042478          362 IAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQ  441 (954)
Q Consensus       362 ~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~  441 (954)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (279)
T d2pwaa1         186 --------------------------------------------------------------------------------  185 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCc
Q 042478          442 ILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSM  521 (954)
Q Consensus       442 l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSM  521 (954)
                                                .+.++.||++||..        ||+|||.+|+++++.      +.|..++||||
T Consensus       186 --------------------------~g~~~~~S~~G~~~--------dv~APG~~i~s~~~~------~~~~~~sGTS~  225 (279)
T d2pwaa1         186 --------------------------YDRRSSFSNYGSVL--------DIFGPGTDILSTWIG------GSTRSISGTSM  225 (279)
T ss_dssp             --------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEEETT------TEEEEECSHHH
T ss_pred             --------------------------cCCCccccCCCCcc--------ccccccccccccccC------CcccCCCcchh
Confidence                                      24468899999976        999999999999987      78999999999


Q ss_pred             hhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCc
Q 042478          522 SCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNP  585 (954)
Q Consensus       522 AaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~  585 (954)
                      |||+|||++|||+|++|.+++++++. |++||++.+                 ...+|+|.+|.
T Consensus       226 AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~~-----------------~~~~g~g~~n~  271 (279)
T d2pwaa1         226 ATPHVAGLAAYLMTLGKTTAASACRY-IADTANKGD-----------------LSNIPFGTVNL  271 (279)
T ss_dssp             HHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEESC-----------------CBSCCTTSCCE
T ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCCC-----------------CCCCCCCChhh
Confidence            99999999999999999999887775 778887421                 24579999986

>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Sphericase
species: Bacillus sphaericus [TaxId: 1421]

Probab=100.00  E-value=8.5e-38  Score=343.67  Aligned_cols=280  Identities=26%  Similarity=0.280  Sum_probs=207.9

Q ss_pred             ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478          129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS  208 (954)
Q Consensus       129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G  208 (954)
                      +..+|..+++|+||+|||||||||++||+|.++...              +.+|....+        .......+.+|||
T Consensus        15 ~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~~~~--------------~~~~~~~~~--------~~~~~~~d~~gHG   72 (309)
T d2ixta1          15 NNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNNVEQ--------------CKDFTGATT--------PINNSCTDRNGHG   72 (309)
T ss_dssp             TCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTTEEE--------------EEESSSSSS--------CEETCCCCSSSHH
T ss_pred             ChhhhccCCCCCCeEEEEEccCCCCCChhHhccccc--------------cccccCCCC--------CCCCCcccccccc
Confidence            678999999999999999999999999999754211              011110000        0011122223899


Q ss_pred             hhhcccccccc-------ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCC-----ccEEEecccCCCCCCCccC
Q 042478          209 TNTDEGLAAGL-------ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDG-----VDVLSVSIGNEIPLFSYID  275 (954)
Q Consensus       209 Ta~v~G~a~G~-------~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dg-----vdVINlSlG~~~~~~~~~~  275 (954)
                      | ||+|+++|.       +.||||+|+|+.+|++...+ +..++++++++++++.+     .+|+|+|++...     ..
T Consensus        73 T-~VAgiiaa~~~~~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~s~~~~~-----~~  146 (309)
T d2ixta1          73 T-HVAGTALADGGSDQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA-----NN  146 (309)
T ss_dssp             H-HHHHHHHCBCCTTSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEECCCBSS-----CC
T ss_pred             c-cccccccccccccchhhhhhhhhccceeeeeecCCCCcccccccccccccccccccccccccccccccccc-----cc
Confidence            9 999976653       58999999999999998776 78888999999988754     368999998864     12


Q ss_pred             cccHHHHHHHHHHHCCCEEEEeCCCCCCCCCcc--ccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCce
Q 042478          276 QRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTI--VNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGF  353 (954)
Q Consensus       276 ~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~--~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~  353 (954)
                        .....++..+.++|+++|+||||+|....++  ++..+++++|++.+........                       
T Consensus       147 --~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~~-----------------------  201 (309)
T d2ixta1         147 --SLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTY-----------------------  201 (309)
T ss_dssp             --HHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTEE-----------------------
T ss_pred             --cchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccccccc-----------------------
Confidence              4566677888999999999999999765443  3456888888865322100000                       


Q ss_pred             eeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEE
Q 042478          354 TGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIK  433 (954)
Q Consensus       354 ~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~  433 (954)
                                                          .                                           
T Consensus       202 ------------------------------------~-------------------------------------------  202 (309)
T d2ixta1         202 ------------------------------------R-------------------------------------------  202 (309)
T ss_dssp             ------------------------------------E-------------------------------------------
T ss_pred             ------------------------------------c-------------------------------------------
Confidence                                                0                                           


Q ss_pred             eehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCce
Q 042478          434 VNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGY  513 (954)
Q Consensus       434 i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y  513 (954)
                                                     .........++++|+..  ....+|||+|||.+|+++++.      ..|
T Consensus       203 -------------------------------~~~~~~~~~~~~~~~~~--~~~~~vdi~apG~~~~s~~~~------~~~  243 (309)
T d2ixta1         203 -------------------------------VADYSSRGYISTAGDYV--IQEGDIEISAPGSSVYSTWYN------GGY  243 (309)
T ss_dssp             -------------------------------ECTTSCCCCTTTTTSSS--CCTTCCCEEEECSSEEEECTT------SSE
T ss_pred             -------------------------------ccccccccccccccccc--cCCCcceeecCCCceeeecCC------Ccc
Confidence                                           00112234566777765  456789999999999999887      789


Q ss_pred             EeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCc
Q 042478          514 ALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNP  585 (954)
Q Consensus       514 ~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~  585 (954)
                      ..++|||||||+|||++|||+|++|+|++++||++|++||++++..+..      .....+++.+|+|++|+
T Consensus       244 ~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~------g~~~~~~~~~g~G~~~v  309 (309)
T d2ixta1         244 NTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY------GAAIGDDYASGFGFARV  309 (309)
T ss_dssp             EEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBST------TCCSSSBTTTBTCBCCC
T ss_pred             eeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCc------CCccCCCcccCCCEecC
Confidence            9999999999999999999999999999999999999999987655421      23455677889999874

>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease kp-43, N-terminal domain
species: Bacillus sp. KSM-KP43 [TaxId: 109322]

Probab=100.00  E-value=3.6e-36  Score=331.83  Aligned_cols=286  Identities=28%  Similarity=0.305  Sum_probs=211.6

Q ss_pred             ccccccC-CCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccC--CCCCC
Q 042478          129 SKNLSTE-SNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKG--IMDMI  205 (954)
Q Consensus       129 ~~~~w~~-~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~--~~~~~  205 (954)
                      ++.+|.. |++|+||+|||||||||++||+|....        .|               +.++...+.+...  ..+.+
T Consensus        10 ~~~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~--------~~---------------~~~~~~~~~~~~~~~~~d~~   66 (318)
T d1wmda2          10 ADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE--------AF---------------RGKITALYALGRTNNANDTN   66 (318)
T ss_dssp             HHHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT--------TT---------------TTCEEEEEETTTTTCCCCSS
T ss_pred             chhHHHccCccccCeEEEEEcCCcCCCCcccccCc--------cc---------------CCcEEeecCCCCCCCCCCCC
Confidence            4567775 999999999999999999999996431        11               1122222222221  22233


Q ss_pred             Cchhhhcccccccc---ceeccCCCcEEEEEEecCCC---CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccH
Q 042478          206 NASTNTDEGLAAGL---ARGGAPLAHLAIYKACWDIG---CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDS  279 (954)
Q Consensus       206 G~GTa~v~G~a~G~---~~GvAP~A~L~~yKv~~~~g---~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~  279 (954)
                      |||| +++|+++|.   ..||||+|+|+.+|++...+   .....+..+++++...+++|+|+|||.... . ...  ..
T Consensus        67 gHGT-~vAgiiag~~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~g~~~~-~-~~~--~~  141 (318)
T d1wmda2          67 GHGT-HVAGSVLGNGSTNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVN-G-AYT--TD  141 (318)
T ss_dssp             SHHH-HHHHHHHCCSSSSCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBCCT-T-CCC--HH
T ss_pred             CCCc-cceeeccccccccchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCceeecccccccc-c-ccc--hh
Confidence            8999 999987764   68999999999999998765   344557889999999999999999998752 2 222  45


Q ss_pred             HHHHHHHHHHCCCEEEEeCCCCCCCCCccc--cCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeee
Q 042478          280 IAIGSFHAIAKGITVVSSAGNDGPVAQTIV--NTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLT  357 (954)
Q Consensus       280 ~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~--~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~  357 (954)
                      ...+...+.++++++|+||||.|.+...+.  ...++++++.+.........                            
T Consensus       142 ~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------------------  193 (318)
T d1wmda2         142 SRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFG----------------------------  193 (318)
T ss_dssp             HHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGGC----------------------------
T ss_pred             HHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCcccccc----------------------------
Confidence            566667778999999999999997766544  34567777766432110000                            


Q ss_pred             eccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehh
Q 042478          358 YSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYE  437 (954)
Q Consensus       358 ~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~  437 (954)
                                                                                                      
T Consensus       194 --------------------------------------------------------------------------------  193 (318)
T d1wmda2         194 --------------------------------------------------------------------------------  193 (318)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCC------CC
Q 042478          438 VGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKD------IQ  511 (954)
Q Consensus       438 ~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~------~~  511 (954)
                                               ........+..||++||..  ....|||+.|||.+|+++........      ..
T Consensus       194 -------------------------~~~~~~~~~~~~s~~G~~~--~~~~~~~~~a~G~~i~~~~~~~~~~~~~~~~~~~  246 (318)
T d1wmda2         194 -------------------------SYADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSFWANHDS  246 (318)
T ss_dssp             -------------------------GGGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCCGGGSSEEEET
T ss_pred             -------------------------cccccccccccccccCCCc--CCCcccceeecCceEEeccccccccCccccCCCc
Confidence                                     0011224467889999986  66789999999999999887642211      36


Q ss_pred             ceEeecCCCchhHHHHHHHHHHHhhC-----CCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcc
Q 042478          512 GYALLSGTSMSCPHVAGIAALIKSLH-----RDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPN  586 (954)
Q Consensus       512 ~y~~~SGTSMAaP~VAG~aALl~q~~-----P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~  586 (954)
                      .|..++|||||||||||++|||+|++     +.|+|.+||++|++||++.+.             ..+++.||||+||+.
T Consensus       247 ~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~-------------~~~~~~~G~G~ld~~  313 (318)
T d1wmda2         247 KYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL-------------GYPNGNQGWGRVTLD  313 (318)
T ss_dssp             TEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-------------CSSCTTTTTCBCCHH
T ss_pred             ceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCC-------------CCCCCCeeeceecHH
Confidence            68899999999999999999999964     468999999999999996532             334568999999999


Q ss_pred             cccC
Q 042478          587 KAMN  590 (954)
Q Consensus       587 ~Al~  590 (954)
                      +||+
T Consensus       314 ~Al~  317 (318)
T d1wmda2         314 KSLN  317 (318)
T ss_dssp             HHHT
T ss_pred             HHhC
Confidence            9987

>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Furin, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.3e-34  Score=317.95  Aligned_cols=282  Identities=16%  Similarity=0.102  Sum_probs=185.3

Q ss_pred             CccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCc
Q 042478          128 SSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINA  207 (954)
Q Consensus       128 ~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~  207 (954)
                      ++..+|..+.+|+||+|||||||||++||+|.++...      .+.-.+......            ........+.+||
T Consensus        25 n~~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~~~------~~~~~~~~~~~~------------~~~~~~~~~~~gH   86 (334)
T d1p8ja2          25 NVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDP------GASFDVNDQDPD------------PQPRYTQMNDNRH   86 (334)
T ss_dssp             CCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBCG------GGCEETTTTBSC------------CCCCCCTTCTTCH
T ss_pred             CHHHHHhcCCCCCCeEEEEEccCCCCCChhHhhcccc------CCCccccCCCCc------------cccccccccCccc
Confidence            4678999999999999999999999999999764321      000000000000            0000001112379


Q ss_pred             hhhhcccccccc------ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhc-CCccEEEecccCCCCCCCccCc-c--
Q 042478          208 STNTDEGLAAGL------ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIH-DGVDVLSVSIGNEIPLFSYIDQ-R--  277 (954)
Q Consensus       208 GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~-dgvdVINlSlG~~~~~~~~~~~-~--  277 (954)
                      || |++|++++.      ..|+||+|+++.+|+..   +...+.+.++.++++ ++++++|+|||...... .... .  
T Consensus        87 GT-~vAgiia~~~~n~~~~~g~a~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~n~S~g~~~~~~-~~~~~~~~  161 (334)
T d1p8ja2          87 GT-RCAGEVAAVANNGVCGVGVAYNARIGGVRMLD---GEVTDAVEARSLGLNPNHIHIYSASWGPEDDGK-TVDGPARL  161 (334)
T ss_dssp             HH-HHHHHHHCCSSSSSSCCCTTTTSEEEEEECSS---SCCCHHHHHHHHTSCTTTCCEEEECCBSCCSSS-CCBCCCHH
T ss_pred             hh-hhhhhhhhccccccccccccccccccchhhcc---ccccchHHHHHHHhhhcCCcEEeCCCCCCCcCc-ccCCccch
Confidence            99 999976653      58999999999999974   344566778888876 68999999999764222 1110 0  


Q ss_pred             ---cHHHHHHHHHHHCCCEEEEeCCCCCCCCCccc----cCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcC
Q 042478          278 ---DSIAIGSFHAIAKGITVVSSAGNDGPVAQTIV----NTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVS  350 (954)
Q Consensus       278 ---d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~----~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~  350 (954)
                         ..+..+...+..+|+++|+||||++.......    ...+.+++|++.+.                           
T Consensus       162 ~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~---------------------------  214 (334)
T d1p8ja2         162 AEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ---------------------------  214 (334)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT---------------------------
T ss_pred             hhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCcccccccccccccccccc---------------------------
Confidence               11233344556899999999999875433222    12334555554321                           


Q ss_pred             CceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccc
Q 042478          351 HGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIP  430 (954)
Q Consensus       351 ~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip  430 (954)
                                                                                                      
T Consensus       215 --------------------------------------------------------------------------------  214 (334)
T d1p8ja2         215 --------------------------------------------------------------------------------  214 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCC-----ceEecCCCC
Q 042478          431 CIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGV-----DILSAYPPI  505 (954)
Q Consensus       431 ~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~-----~I~sa~~~~  505 (954)
                                                           .+..+.||++|+...      .+..+||.     .+.+.... 
T Consensus       215 -------------------------------------~g~~~~~s~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-  250 (334)
T d1p8ja2         215 -------------------------------------FGNVPWYSEACSSTL------ATTYSSGNQNEKQIVTTDLRQ-  250 (334)
T ss_dssp             -------------------------------------TSCCCTTCCBCTTCC------EEEECCCSTTSCCEEEEETTT-
T ss_pred             -------------------------------------CCceeeecccCCccc------cccccccccccccccccccCC-
Confidence                                                 223344555554431      13333332     23333332 


Q ss_pred             CCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCc
Q 042478          506 GSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNP  585 (954)
Q Consensus       506 ~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~  585 (954)
                           ..|..++|||||||||||++|||+|++|+|++.|||++|++||++.+..+..+...  ......+..||+|+||+
T Consensus       251 -----~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~~~~--~~~~~~~~~~G~G~lna  323 (334)
T d1p8ja2         251 -----KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATN--GVGRKVSHSYGYGLLDA  323 (334)
T ss_dssp             -----EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEEC--TTSCEEBTTTBTCBCCH
T ss_pred             -----ccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCcccccc--CCCcccCCCCcceEeCH
Confidence                 67899999999999999999999999999999999999999999876544333322  12233456799999999


Q ss_pred             ccccC
Q 042478          586 NKAMN  590 (954)
Q Consensus       586 ~~Al~  590 (954)
                      .+||+
T Consensus       324 ~~Av~  328 (334)
T d1p8ja2         324 GAMVA  328 (334)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99987

>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Kexin, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-34  Score=317.86  Aligned_cols=284  Identities=17%  Similarity=0.097  Sum_probs=194.3

Q ss_pred             CccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCc
Q 042478          128 SSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINA  207 (954)
Q Consensus       128 ~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~  207 (954)
                      ++..+|..+++|+||+|||||||||++||+|.++...         ..   ..+|..         .........+.+||
T Consensus        34 n~~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~~---------~~---~~~~~~---------~~~~~~~~~~~~~H   92 (339)
T d2id4a2          34 NVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCA---------EG---SWDFND---------NTNLPKPRLSDDYH   92 (339)
T ss_dssp             CCHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBCG---------GG---CEETTT---------TBSCCCCCSTTTTH
T ss_pred             CHHHHHhcCCCCCCcEEEEECcCcCCCChHHhcCccc---------cc---cccccc---------CCCccCCCcccccc
Confidence            4678999999999999999999999999999864322         00   000100         00000011112279


Q ss_pred             hhhhcccccccc------ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCc-ccH-
Q 042478          208 STNTDEGLAAGL------ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQ-RDS-  279 (954)
Q Consensus       208 GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~-~d~-  279 (954)
                      || |++|++++.      ..|+||+|+|+.+++... .+...++..++.++++. .+|+|+|+|...... .... ... 
T Consensus        93 GT-~vag~iaa~~~~~~~~~Gvap~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~v~~~s~g~~~~~~-~~~~~~~~~  168 (339)
T d2id4a2          93 GT-RCAGEIAAKKGNNFCGVGVGYNAKISGIRILSG-DITTEDEAASLIYGLDV-NDIYSCSWGPADDGR-HLQGPSDLV  168 (339)
T ss_dssp             HH-HHHHHHHCCSSSSSSCCCTTTTSEEEEEECTTS-CCCHHHHHHHTTTTTTT-CSEEEECEESCCSSS-CCBCCCHHH
T ss_pred             cc-eeeecccccccccccccccccccccceEEEeec-cccchHHHHHHHHHHhh-CCEEeccCCCCCCcc-cccCccchh
Confidence            99 999876542      689999999999999753 36777888888888776 489999999754211 1110 011 


Q ss_pred             ----HHHHHHHHHHCCCEEEEeCCCCCCCCCccc----cCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCC
Q 042478          280 ----IAIGSFHAIAKGITVVSSAGNDGPVAQTIV----NTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSH  351 (954)
Q Consensus       280 ----~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~----~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~  351 (954)
                          ...+...+..+|+++|+||||++.......    ...+.+++|+++                              
T Consensus       169 ~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------  218 (339)
T d2id4a2         169 KKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAI------------------------------  218 (339)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEE------------------------------
T ss_pred             HHHHHHHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccc------------------------------
Confidence                223344555799999999999875432221    122333343332                              


Q ss_pred             ceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccce
Q 042478          352 GFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPC  431 (954)
Q Consensus       352 ~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~  431 (954)
                                                                                                      
T Consensus       219 --------------------------------------------------------------------------------  218 (339)
T d2id4a2         219 --------------------------------------------------------------------------------  218 (339)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCC
Q 042478          432 IKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQ  511 (954)
Q Consensus       432 ~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~  511 (954)
                                                        ...+..+.||++|+..    ...++..+||..+.++...     +.
T Consensus       219 ----------------------------------~~~g~~~~~s~~~~~~----~~~~~~~~~g~~~~s~~~~-----~~  255 (339)
T d2id4a2         219 ----------------------------------DHKDLHPPYSEGCSAV----MAVTYSSGSGEYIHSSDIN-----GR  255 (339)
T ss_dssp             ----------------------------------CTTSCCCTTCCCCTTE----EEEEECSBTTBCEEEECST-----TC
T ss_pred             ----------------------------------cccccccccccccCcc----ceeeeeeccccccceeccC-----CC
Confidence                                              1224456677777653    2345777889999887765     36


Q ss_pred             ceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccc-cccCCCCCCCCCCCCCCCccCcccccC
Q 042478          512 GYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNI-FEEGSTRKEADPFDIGGGHVNPNKAMN  590 (954)
Q Consensus       512 ~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi-~~~~~~~~~~~~~~~GaG~vn~~~Al~  590 (954)
                      .|..++|||||||||||++|||+|++|+|++.|||++|++||..++....+. .+.  .........||||+||+.+||+
T Consensus       256 ~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~--~~~~~~~~~~G~G~ln~~~Av~  333 (339)
T d2id4a2         256 CSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDS--AMGKKYSHRYGFGKIDAHKLIE  333 (339)
T ss_dssp             EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEEC--SSSSEEBTTTBTCBCCHHHHHH
T ss_pred             ccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCcccccc--CCCCCcCCCccchhhCHHHHHH
Confidence            7899999999999999999999999999999999999999999875433211 111  1223345679999999999998


Q ss_pred             C
Q 042478          591 P  591 (954)
Q Consensus       591 p  591 (954)
                      .
T Consensus       334 ~  334 (339)
T d2id4a2         334 M  334 (339)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal L11/L12e N-terminal domain
superfamily: Ribosomal L11/L12e N-terminal domain
family: Ribosomal L11/L12e N-terminal domain
domain: 60S ribosomal protein L12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=4e-30  Score=223.14  Aligned_cols=83  Identities=23%  Similarity=0.376  Sum_probs=80.0

Q ss_pred             ecCCCCCCccccccceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEE
Q 042478          793 AMAPPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFI  872 (954)
Q Consensus       793 ~~~~~~~~~~~~~~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~  872 (954)
                      ||||++          +++|+|+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+|+|+ ||+|+|+
T Consensus        10 K~dp~~----------v~~Ikl~v~gG~A~p~PplgP~LGp~Gini~~f~k~fN~~T~~~kG~~VpV~itV~-dRsf~i~   78 (92)
T d1wiba_          10 KFDPNE----------VKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQ-NRQAQIE   78 (92)
T ss_dssp             CCCSSS----------CEEEEEEEETTCCCCSSCSHHHHTTTCSCHHHHHHHHHHHTTTTTTSEEEEEEEEE-TTEEECC
T ss_pred             CCCCCc----------eEEEEEEEecCccCCCCCccccccccCCCHHHHHHHHHHhhhhccCCeEeEEEEEe-CceEEEE
Confidence            777777          89999999999999999999999999999999999999999999999999999997 9999999


Q ss_pred             EeCCCHHHHHHHHhC
Q 042478          873 LKTPPASVLLLKAAG  887 (954)
Q Consensus       873 ~~~p~~s~li~k~~~  887 (954)
                      | +||+|+||+||+|
T Consensus        79 V-~PpaS~L~~~aaG   92 (92)
T d1wiba_          79 V-VPSASALSGPSSG   92 (92)
T ss_dssp             B-CSCCCCCCCCSCC
T ss_pred             E-cCCHHHHHHHhcC
Confidence            9 8999999999986

>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]

Probab=99.94  E-value=2.7e-28  Score=271.94  Aligned_cols=306  Identities=17%  Similarity=0.123  Sum_probs=173.9

Q ss_pred             cCCCCCCceEEEEEeCCCCCCCCCcCCC--CCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhh
Q 042478          134 TESNMGEGTIIGIIDTGVWPESESFSDK--GMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNT  211 (954)
Q Consensus       134 ~~~~~G~GVvVgVIDTGId~~Hp~f~d~--~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~  211 (954)
                      .++++|+||+|||||||||++||+|.+.  .++               ..+    ++.     ..     .+.+||++ |
T Consensus        18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~~~~~~---------------~~~----~~~-----~~-----~~~~g~~~-~   67 (357)
T d1t1ga_          18 PEGLDGQGQCIAIIALGGGYDETSLAQYFASLG---------------VSA----PQV-----VS-----VSVDGATN-Q   67 (357)
T ss_dssp             CTTCCCTTCEEEEEESSCCCCHHHHHHHHHHTT---------------CCC----CCE-----EE-----EESTTCCC-C
T ss_pred             CCCCCCCCCEEEEEEcCCCCCcHHHHHHHhhcC---------------CCC----CCC-----ce-----eCCCCCCC-C
Confidence            4689999999999999999999999642  111               000    000     00     00012333 2


Q ss_pred             cccccc----------ccceeccCCCcEEEEEEecCCCCChHHHHHHHHHHh---cCCccEEEecccCCCCCCCccCccc
Q 042478          212 DEGLAA----------GLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAI---HDGVDVLSVSIGNEIPLFSYIDQRD  278 (954)
Q Consensus       212 v~G~a~----------G~~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai---~dgvdVINlSlG~~~~~~~~~~~~d  278 (954)
                      +.|...          ..+.||||+|+|+.+|++..    ....+.++++++   +++++|||+|||...... ......
T Consensus        68 ~~g~~~~~~~~~~~d~~~~~GvAp~A~i~~~~~~~~----~~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~~-~~~~~~  142 (357)
T d1t1ga_          68 PTGDPNGPDGEVELDIEVAGALAPGAKIAVYFAPNT----DAGFLNAITTAVHDPTHKPSIVSISWGGPEDSW-APASIA  142 (357)
T ss_dssp             CCSCTTSTHHHHHHHHHHHHHHSTTSEEEEEECCSS----HHHHHHHHHHHHHCTTTCCSEEEECCCEEGGGS-CHHHHH
T ss_pred             CCCccccccccccCCcccceeecccCeEEEEecccC----CCchHHHHHHHHHhhhcCCeEEecccccCcCcc-ccchHH
Confidence            222211          12589999999999999854    334455555554   569999999999864111 111113


Q ss_pred             HHHHHHHHHHHCCCEEEEeCCCCCCCCC--------ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcC
Q 042478          279 SIAIGSFHAIAKGITVVSSAGNDGPVAQ--------TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVS  350 (954)
Q Consensus       279 ~~~~a~~~A~~~Gi~VV~AAGN~G~~~~--------t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~  350 (954)
                      .+......+..+|+++|+|+||+|....        ......+++++|++.........         ....+.....  
T Consensus       143 ~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~--  211 (357)
T d1t1ga_         143 AMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASAGR---------IERETVWNDG--  211 (357)
T ss_dssp             HHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECSSC---------EEEEEECBCH--
T ss_pred             HHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCCCCc---------cccceecccc--
Confidence            4566667778899999999999985432        22245678888887543211000         0000000000  


Q ss_pred             CceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccc
Q 042478          351 HGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIP  430 (954)
Q Consensus       351 ~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip  430 (954)
                          ....         ...                       +.                                   
T Consensus       212 ----~~~~---------~~~-----------------------~g-----------------------------------  220 (357)
T d1t1ga_         212 ----PDGG---------STG-----------------------GG-----------------------------------  220 (357)
T ss_dssp             ----HHHC---------BCC-----------------------CE-----------------------------------
T ss_pred             ----cccc---------ccc-----------------------CC-----------------------------------
Confidence                0000         000                       00                                   


Q ss_pred             eEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceE--ecCCCCCCC
Q 042478          431 CIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDIL--SAYPPIGSK  508 (954)
Q Consensus       431 ~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~--sa~~~~~~~  508 (954)
                                           ....+     ............+++++++.  .++.|||+.+++....  +....    
T Consensus       221 ---------------------~s~~~-----~~p~~~~~~~~~~~~~~~~~--~~~~~pd~~~~~~~~~~~~~~~~----  268 (357)
T d1t1ga_         221 ---------------------VSRIF-----PLPSWQERANVPPSANPGAG--SGRGVPDVAGNADPATGYEVVID----  268 (357)
T ss_dssp             ---------------------ECSSS-----CCCGGGTTSCCCCCSSTTCC--CCCEECSEEEECCTTEEEEEEET----
T ss_pred             ---------------------ccccc-----ccCcccccccccccccCCCC--CCceecceecccCCCCceEEecC----
Confidence                                 00000     00011234556777777776  7899999999876554  44433    


Q ss_pred             CCCceEeecCCCchhHHHHHHHHHHHhhCCC---CCHHHHHHHHHhccccCCCCCcccc--ccCCCCCCCCCCCCCCCcc
Q 042478          509 DIQGYALLSGTSMSCPHVAGIAALIKSLHRD---WSPAAIRSALVTTASQTGTDGMNIF--EEGSTRKEADPFDIGGGHV  583 (954)
Q Consensus       509 ~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~---~sp~~Iks~L~~TA~~~~~~g~pi~--~~~~~~~~~~~~~~GaG~v  583 (954)
                        +.|..++|||||||||||++|||+|+++.   +...++..+...+.+++........  ...+...+..+..+|+|++
T Consensus       269 --~~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~~~~~~~~~~~~a~~G~d~~tG~G~~  346 (357)
T d1t1ga_         269 --GETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIANRARIYQAGPGWDPCTGLGSP  346 (357)
T ss_dssp             --TEEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCBCCCSSSSCCSBCCSSSBTTTBTCEE
T ss_pred             --CceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecccccCCCCCCCCCcccCccCCCCCccCchh
Confidence              78999999999999999999999998643   2333444333233222210000000  0001123455778999999


Q ss_pred             CcccccC
Q 042478          584 NPNKAMN  590 (954)
Q Consensus       584 n~~~Al~  590 (954)
                      |+.++++
T Consensus       347 n~~~~~~  353 (357)
T d1t1ga_         347 IGIRLLQ  353 (357)
T ss_dssp             CHHHHHH
T ss_pred             hHHHHHH
Confidence            9888765

>d3cjsb1 d.47.1.1 (B:1-70) Ribosomal protein L11, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal L11/L12e N-terminal domain
superfamily: Ribosomal L11/L12e N-terminal domain
family: Ribosomal L11/L12e N-terminal domain
domain: Ribosomal protein L11, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=2e-27  Score=194.90  Aligned_cols=69  Identities=64%  Similarity=1.039  Sum_probs=67.3

Q ss_pred             cceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEe
Q 042478          806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILK  874 (954)
Q Consensus       806 ~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~  874 (954)
                      |+++++|||+++||+|+|+|||||+|||+|||+|+|||+||++|++++|.+|||+|+||+||||+|++|
T Consensus         2 Kkv~~~ikl~v~aG~A~P~PPvGpaLG~~GiNi~~Fck~fN~~T~~~~g~~vpv~Itv~~Drsf~f~iK   70 (70)
T d3cjsb1           2 KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTK   70 (70)
T ss_dssp             CCEEEEEEEEEETTCCCSSTTHHHHHHTTTCCHHHHHHHHHHHHGGGCSCEEEEEEEEETTSCEEEEEC
T ss_pred             cceeeEEEEEeecCCCCCCCCCcchhhhcCcCHHHHHHHHHHHHHhcCCCceeeEEEEeCCCcEEEEeC
Confidence            678999999999999999999999999999999999999999999999999999999999999999986

>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein L11, C-terminal domain
family: Ribosomal protein L11, C-terminal domain
domain: Ribosomal protein L11, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=1e-26  Score=194.37  Aligned_cols=74  Identities=58%  Similarity=0.887  Sum_probs=72.3

Q ss_pred             EEEEeCCCHHHHHHHHhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEc
Q 042478          870 TFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID  943 (954)
Q Consensus       870 ~~~~~~p~~s~li~k~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~  943 (954)
                      +|++|+||+||||+|++|+++||++|+++++|+||++||||||++|++||++.+|+++||+|+||||||||+|+
T Consensus         1 TF~~ktPP~s~llkkaagi~kGs~~p~~~~vG~it~~qi~eIAk~K~~Dl~~~~l~~a~k~v~GtArSMGI~Ve   74 (74)
T d1hc8a_           1 TFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGIVVE   74 (74)
T ss_dssp             CCCCCCCCHHHHHHHHHTCSCCCSSTTTCCCEEECHHHHHHHHHHSGGGCCCSSHHHHHHHHHHHHHHHTEEEC
T ss_pred             CccccCCCHHHHHHHHHCCCcCcCCCCCeeeeEEcHHHHHHHHHHHHhhcCCCCHHHHHHHHHhhHhhceEEeC
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999996

>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal L11/L12e N-terminal domain
superfamily: Ribosomal L11/L12e N-terminal domain
family: Ribosomal L11/L12e N-terminal domain
domain: Ribosomal protein L11, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=1.9e-26  Score=185.08  Aligned_cols=62  Identities=76%  Similarity=1.250  Sum_probs=61.0

Q ss_pred             EEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEE
Q 042478          812 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFIL  873 (954)
Q Consensus       812 i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~  873 (954)
                      |||+++||+|+|+|||||+|||+|||+|+|||+||++|++++|++|||+|+||+||||+|++
T Consensus         2 ikl~v~aG~A~p~PPvGpaLG~~GiNi~~F~k~fN~~Tk~~~g~~vpV~I~v~~DrsF~f~i   63 (63)
T d1mmsa2           2 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFII   63 (63)
T ss_dssp             EEEEEETTCCCCTTTTTHHHHTTTCCHHHHHHHHHHHTTTSCSSEEEEEEEECTTSCEEEEE
T ss_pred             eEEEEecCCCCCCCCCcchhhhcCcCHHHHHHHHHHHhcccCCCeEeEEEEEeCCCcEEEeC
Confidence            89999999999999999999999999999999999999999999999999999999999986

>d2gycg2 d.47.1.1 (G:2-72) Ribosomal protein L11, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal L11/L12e N-terminal domain
superfamily: Ribosomal L11/L12e N-terminal domain
family: Ribosomal L11/L12e N-terminal domain
domain: Ribosomal protein L11, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=4.5e-28  Score=199.31  Aligned_cols=70  Identities=63%  Similarity=1.025  Sum_probs=67.0

Q ss_pred             cceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCC-CCceeeEEEEEeCCCeEEEEEeC
Q 042478          806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADK-AGYVIPVEITVYDDRSFTFILKT  875 (954)
Q Consensus       806 ~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~-~g~~i~v~i~v~~dr~~~~~~~~  875 (954)
                      |++.++|||+++||+|+|+|||||+|||+|||||+|||+||++|+++ +|++|||+|+||+||||+|++|+
T Consensus         1 Kkv~~~ikl~i~aG~A~PaPPvGpaLG~~GiNi~~F~k~fN~~T~~~~~G~~vpV~Itv~~Drsf~f~ikT   71 (71)
T d2gycg2           1 KKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKT   71 (71)
T ss_dssp             CCCCCCCCCCBCTTCCCSSSSTTTTTTSSSCCSSSSSTTTTTTSCSSCTTCCBCCBCCCCSSSCCCCBCCC
T ss_pred             CceeEEEEEEEecCCCCCCCCCcchhhhcCcCHHHHHHHHHHHhhccCCCCEEEEEEEEeCCCeEEEEEcC
Confidence            57788999999999999999999999999999999999999999996 59999999999999999999975

>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein L11, C-terminal domain
family: Ribosomal protein L11, C-terminal domain
domain: Ribosomal protein L11, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=2e-25  Score=184.73  Aligned_cols=70  Identities=60%  Similarity=0.919  Sum_probs=68.7

Q ss_pred             eCCCHHHHHHHHhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEc
Q 042478          874 KTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID  943 (954)
Q Consensus       874 ~~p~~s~li~k~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~  943 (954)
                      |+||+||||+|++|+++|+++|+++++|+||++||||||++|++||++.+|+++||+|+||||||||+|+
T Consensus         1 KtPP~s~likkaagi~kGs~~p~~~~vg~it~~qv~eIAk~K~~dl~~~~l~~a~k~v~GtArSMGI~VV   70 (70)
T d1mmsa1           1 KTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVV   70 (70)
T ss_dssp             CCCCHHHHHHHHHTCSSCCSSTTTSCCEEECHHHHHHHHHHHGGGCCCSSHHHHHHHHHHHHTTTTEEEC
T ss_pred             CCCCHHHHHHHHHCCCcCCCCCCCcccCeEcHHHHHHHHHHHhcccCCCCHHHHHHHHHHhHhhCeeEeC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999985

>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein L11, C-terminal domain
family: Ribosomal protein L11, C-terminal domain
domain: Ribosomal protein L11, C-terminal domain
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.91  E-value=2.9e-25  Score=184.76  Aligned_cols=70  Identities=31%  Similarity=0.630  Sum_probs=68.7

Q ss_pred             eCCCHHHHHHHHhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEc
Q 042478          874 KTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID  943 (954)
Q Consensus       874 ~~p~~s~li~k~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~  943 (954)
                      .+||+||||+|++|+++|+++|+++++|+||++|||||||+|++||++.+|+++||+|+||||||||+||
T Consensus         1 gtPp~s~ll~ka~gi~kGs~~p~~~~vg~it~~~i~eIAk~K~~dl~~~~l~~~~k~V~GTa~SmGi~Ve   70 (70)
T d1vqoi1           1 GVPPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTSLGVTIE   70 (70)
T ss_dssp             CCCCHHHHHHHHTCCSSCCSSTTTSCCEEECHHHHHHHHHHCTTTCCCSSHHHHHHHHTTTSTTTTEEEC
T ss_pred             CCCCHHHHHHHHHCCCCCCCCCCCeeeeeeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhhhcceEEeC
Confidence            4899999999999999999999999999999999999999999999999999999999999999999996

>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Pseudomonas sp., sedolisin [TaxId: 306]

Probab=99.91  E-value=1e-25  Score=253.49  Aligned_cols=105  Identities=24%  Similarity=0.193  Sum_probs=79.4

Q ss_pred             ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcC-CccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEe
Q 042478          220 ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHD-GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSS  297 (954)
Q Consensus       220 ~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~d-gvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~A  297 (954)
                      +.||||+|+|.++|++.+.+ ....++++||+||+++ +++|||+|||............+.+..++.+|..+||+||+|
T Consensus        87 ~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~A  166 (369)
T d1ga6a_          87 IVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVS  166 (369)
T ss_dssp             HHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeeccccccccCCCcchHHHHHHHHHHHHHHCCCEEEEe
Confidence            68999999999999998776 6778999999999965 799999999985311000111145667778888999999999


Q ss_pred             CCCCCCCCC-------------ccccCCCceEEEcccccC
Q 042478          298 AGNDGPVAQ-------------TIVNTAPWIITVGATTID  324 (954)
Q Consensus       298 AGN~G~~~~-------------t~~~~ap~vitVgAs~~d  324 (954)
                      |||+|....             ..+...|++++|+++...
T Consensus       167 aGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~~  206 (369)
T d1ga6a_         167 SGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY  206 (369)
T ss_dssp             CCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred             CCCCcccCcCCCCCCccccccccccccCCceeeeeeeccc
Confidence            999985422             223456899999986543

>d1xbpg1 a.4.7.1 (G:72-143) Ribosomal protein L11, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein L11, C-terminal domain
family: Ribosomal protein L11, C-terminal domain
domain: Ribosomal protein L11, C-terminal domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.90  E-value=5.5e-25  Score=184.13  Aligned_cols=71  Identities=46%  Similarity=0.738  Sum_probs=69.5

Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCCC
Q 042478          876 PPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPV  946 (954)
Q Consensus       876 p~~s~li~k~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~  946 (954)
                      ||+||||+|++|++||+++|+++++|+||++|||||||+|++||++.+|+++||+|+||||||||+|+|+-
T Consensus         1 Pp~s~ll~kaagi~kGs~~p~~~~vG~it~~~i~eIAk~K~~dl~~~~l~~~~k~V~GTa~SmGi~Veg~p   71 (72)
T d1xbpg1           1 PPMSYLIRKAAGIGKGSSTPNKAKVGKLNWDQVLEIAKTKMPDLNAGSVEAAANTVAGTARSMGVTVEGGP   71 (72)
T ss_pred             CCHHHHHHHHHCcCcCCCCCCCchhcccCHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhheeceEEEecCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999863

>d3cjrb1 a.4.7.1 (B:71-137) Ribosomal protein L11, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein L11, C-terminal domain
family: Ribosomal protein L11, C-terminal domain
domain: Ribosomal protein L11, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=1.7e-24  Score=177.85  Aligned_cols=67  Identities=57%  Similarity=0.901  Sum_probs=47.0

Q ss_pred             CCCHHHHHHHHhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceE
Q 042478          875 TPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGID  941 (954)
Q Consensus       875 ~p~~s~li~k~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~  941 (954)
                      |||+||||+|++|+++||++|+++++|+||++||||||++|++||++.+|+++||+|+||||||||+
T Consensus         1 TPP~s~llkkaagi~kGs~~p~~e~vG~it~~~i~eIAk~K~~dl~~~~l~~a~k~v~GTArSmGIe   67 (67)
T d3cjrb1           1 TPPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARSMGVE   67 (67)
T ss_dssp             CCCHHHHHC-------------------CCCSGGGTHHHHSTTTSCCSCSSTTHHHHHHHHHTTTCC
T ss_pred             CCcHHHHHHHHHCCCcCCCCCCCcccceecHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhhhcccC
Confidence            7999999999999999999999999999999999999999999999999999999999999999985

>d2gycg1 a.4.7.1 (G:73-140) Ribosomal protein L11, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein L11, C-terminal domain
family: Ribosomal protein L11, C-terminal domain
domain: Ribosomal protein L11, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.1e-24  Score=179.43  Aligned_cols=68  Identities=49%  Similarity=0.746  Sum_probs=67.0

Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEc
Q 042478          876 PPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID  943 (954)
Q Consensus       876 p~~s~li~k~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~  943 (954)
                      ||+||||+|++|+++||++|+++++|+||++||||||++|++||++.+|+++||+|+||||||||+|+
T Consensus         1 PP~s~llkkaagi~kGs~~p~~~~vg~it~~qv~eIAk~K~~dl~~~~l~~a~k~V~GTArSMGI~Ve   68 (68)
T d2gycg1           1 PPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVE   68 (68)
T ss_dssp             CCSSTTTGGGSCSSSCCSSTTSSCCCCCCSHHHHSTTTTTTTTCCCSSSHHHHTTTTTSSCSSSCCCC
T ss_pred             CCHHHHHHHHHCCCcCCCCCCCcEeeeecHHHHHHHHHHHhcccCCCCHHHHHHHHHhhHhcceEEeC
Confidence            89999999999999999999999999999999999999999999999999999999999999999986

>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Protease propeptides/inhibitors
family: Subtilase propeptides/inhibitors
domain: Subtilisin prosegment
species: Bacillus subtilis [TaxId: 1423]

Probab=98.56  E-value=1e-07  Score=79.10  Aligned_cols=70  Identities=16%  Similarity=0.117  Sum_probs=55.4

Q ss_pred             CceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEccceeEEEEEcCHHHHHHHHcCCCeeEEEeCceee
Q 042478           32 SNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILK  111 (954)
Q Consensus        32 ~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~~~~nGfs~~l~~~~~~~L~~~p~V~~V~~~~~~~  111 (954)
                      .+.|||.|++.....   ....+.+++++       .+.++.+.|+ .||||+++|++++++.|+++|+|.+|++|+.++
T Consensus         1 e~~YIV~fK~~~~~~---~~~~~~~~v~~-------~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~   69 (71)
T d1scjb_           1 EKKYIVGFKQTMSAM---SSAKKKDVISQ-------KGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAH   69 (71)
T ss_dssp             CEEEEEEECSSSSCC---SHHHHHHHHHT-------TTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEE
T ss_pred             CCcEEEEECCCCChH---HHHHHHHHHHH-------cCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEE
Confidence            368999999864221   23445444432       3568999998 799999999999999999999999999999876


Q ss_pred             c
Q 042478          112 L  112 (954)
Q Consensus       112 l  112 (954)
                      .
T Consensus        70 a   70 (71)
T d1scjb_          70 E   70 (71)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Protease propeptides/inhibitors
family: Subtilase propeptides/inhibitors
domain: Proteinase A inhibitor 1, POIA1
species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]

Probab=98.43  E-value=3e-07  Score=76.46  Aligned_cols=68  Identities=19%  Similarity=0.274  Sum_probs=52.2

Q ss_pred             CceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEc-cceeEEEEEcCHHHHHHHHcCCC--eeEEEeCc
Q 042478           32 SNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYK-HGFSGFAARLTKTQAEKIAELPG--VVQVIPNG  108 (954)
Q Consensus        32 ~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~-~~~nGfs~~l~~~~~~~L~~~p~--V~~V~~~~  108 (954)
                      .+.|||.|++..   +....+.|..++.+.       ...+.+.|. +.|+||+++|++++++.|+++|+  |.+||+|.
T Consensus         2 aG~YIVvlK~~~---~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~   71 (72)
T d1v5ib1           2 AGKFIVIFKNDV---SEDKIRETKDEVIAE-------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH   71 (72)
T ss_dssp             CEEEEEEECTTC---CHHHHHHHHHHHHHH-------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred             CccEEEEECCCC---CHHHHHHHHHHHHhc-------CCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence            468999999853   333445566665544       345777777 68999999999999999999665  99999986


Q ss_pred             e
Q 042478          109 I  109 (954)
Q Consensus       109 ~  109 (954)
                      .
T Consensus        72 V   72 (72)
T d1v5ib1          72 V   72 (72)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Transferrin receptor ectodomain, apical domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00038  Score=67.86  Aligned_cols=67  Identities=10%  Similarity=0.155  Sum_probs=55.2

Q ss_pred             cccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC----------------CCC-----------------
Q 042478          379 ATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG----------------LDS-----------------  425 (954)
Q Consensus       379 ~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~----------------~~~-----------------  425 (954)
                      ..+++|||+|+++  |.+.+.+|..+++++||.|+|+|.+..+.                ..|                 
T Consensus        58 ~~~v~GkI~l~r~--G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~  135 (193)
T d1de4c2          58 YTPVNGSIVIVRA--GKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPS  135 (193)
T ss_dssp             SSCCTTSEEEEES--CSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSC
T ss_pred             ccccCceEEEEeC--CCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCcc
Confidence            3579999999999  89999999999999999999999874431                000                 


Q ss_pred             ----CcccceEEeehhhHHHHHHHHh
Q 042478          426 ----CNLIPCIKVNYEVGTQILSYIR  447 (954)
Q Consensus       426 ----~~~ip~~~i~~~~g~~l~~~~~  447 (954)
                          -..||+.-|+..+++.|+..+.
T Consensus       136 ~~~~lP~IP~~PIS~~dA~~lL~~L~  161 (193)
T d1de4c2         136 RSSGLPNIPVQTISRAAAEKLFGNME  161 (193)
T ss_dssp             CCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred             ccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence                1247999999999999998774

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=95.62  E-value=0.046  Score=47.46  Aligned_cols=85  Identities=19%  Similarity=0.174  Sum_probs=59.1

Q ss_pred             CCCCeeecccCCCCceEEEEEEEEecCCCCce-eEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCCccCCCCCC
Q 042478          636 LNLPSITIPNLHNNETVTVTRKVTNVGQINSA-YEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDA  714 (954)
Q Consensus       636 lN~psi~~~~~~~~~~~tv~rtvtNvg~~~~t-Y~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~  714 (954)
                      +..|++.+.-.   ...+++.+|+|.|....+ -++.++.|+|=++...  ...+ ++||+++++++++++..   ...+
T Consensus         6 ~t~p~~~v~pG---~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~--~~~L-~pG~s~~~~~~Vt~p~~---a~~G   76 (103)
T d1w8oa1           6 FTIPDVALEPG---QQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGS--VEPL-MPGRQAKGQVTITVPAG---TTPG   76 (103)
T ss_dssp             EECCCEEECTT---CEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEE--ECCB-CTTCEEEEEEEEECCTT---CCCE
T ss_pred             ccCcceeeCCC---CeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCc--ceee-CCCCcEEEEEEEECCCC---CCCc
Confidence            44577777543   678899999999987644 5678889999776544  4444 68999999999998754   1445


Q ss_pred             CceEEEEEEECCcceE
Q 042478          715 EYRFGSLTWTDDSVDS  730 (954)
Q Consensus       715 ~~~~G~l~w~~~~~~v  730 (954)
                      .|.. .++.+++.+..
T Consensus        77 ~Y~i-~~~a~~~~~~~   91 (103)
T d1w8oa1          77 RYRV-GATLRTSAGNA   91 (103)
T ss_dssp             EEEE-EEEEEETTEEE
T ss_pred             eEEE-EEEEEeCCcce
Confidence            5644 34455554433

>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Glutamate carboxypeptidase II
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.011  Score=58.96  Aligned_cols=78  Identities=18%  Similarity=0.169  Sum_probs=59.6

Q ss_pred             CCccCCCCCC------cccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCC---------------------
Q 042478          369 ANDCRQGSLN------ATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTD---------------------  421 (954)
Q Consensus       369 ~~~C~~~~~~------~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~---------------------  421 (954)
                      .+.|...++.      .-+++|||+|++.  |.+.+.+|..+|++.||.|+|+|++..+                     
T Consensus        60 vnyG~~~Df~~L~~~~gi~~~gkIvl~ry--G~~~~~~Kv~~A~~~GA~GviiysDP~d~~~~g~~~yP~~~~~p~~~vq  137 (233)
T d3bi1a2          60 VNYARTEDFFKLERDMKINCSGKIVIARY--GKVFRGNKVKNAQLAGAKGVILYSDPADYFAPGVKSYPDGWNLPGGGVQ  137 (233)
T ss_dssp             CTTCCHHHHHHHHHTSCCCCTTCEEEEEC--CSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTSSSBCCTTCCC
T ss_pred             ecCCcHHHHHHHHHhcCCcccceEEEEeC--CCCchhHHHHHHHHcCceEEEEecChHHccCcccccccCCccCCCCcee
Confidence            4555554432      4589999999999  8899999999999999999999986310                     


Q ss_pred             ------------C-C------------C-----CCcccceEEeehhhHHHHHHHHhh
Q 042478          422 ------------G-L------------D-----SCNLIPCIKVNYEVGTQILSYIRR  448 (954)
Q Consensus       422 ------------~-~------------~-----~~~~ip~~~i~~~~g~~l~~~~~s  448 (954)
                                  . .            +     ....||+.-|+..++..|++.+..
T Consensus       138 rgsv~~~~~~GDplTPg~ps~~~~~r~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~G  194 (233)
T d3bi1a2         138 RGNILNLNGAGDPLTPGYPANEYAYRRGIAEAVGLPSIPVHPIGYYDAQKLLEKMGG  194 (233)
T ss_dssp             CEECCCCTTCCSTTCTTSCCCTTCCCCCGGGCSSCCSSCEEEECHHHHHHHHTTBCB
T ss_pred             EeeeeecCCCCCCCCCCCCCCCCCcccChhHhcCCCCCceeccCHHHHHHHHHHcCC
Confidence                        0 0            0     013679999999999999987753