Citrus Sinensis ID: 042534

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
PHLTDYLQLENLKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPRVHVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKWAWVRTVTNQPDFVKS
cccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccccccccccccccHHHcccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccHHccccHHcccccEEEcccccccHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEccEEEEEcHHHHHccccccccccHHHHHHHHHccccccccc
ccccccccccccccccccccccccccccccHEcccccHHHHHHEEccccccccccccccccHHHEEccccccEEEEcccccEEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccEEEccHHHHHHHHccccEEEccccccccHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHcccccEEEEccccccccccccHHHHHHHHHHHcccEEEEEEccccHHHcHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHEEEccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccEEEEEHHHHHHcccccccccHHHHHHHHHccccccccc
phltdylqlenlktytnpldqnrffhpshgfyvspsdVILRQIVYDLssacgafsdsdprvhvayhragprkqiffepkntRAAIVTcgglcpglNTVIRELVVGLWELYGVRQILGIQagyrgfysttrnplvlnpkmvrgwhklggtvletsrggfdlHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRkinvgvvgipktvdndvgiidrSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGrstghialhatlssrdvdcclipemefylegKGGLVEFLDNRLKENGHAVLVVAEgagqnmiprtaaqteerdesgnlvflDVGSWLKTELKKWwardhpgelftvkyidptymiravpanatdNLYCTLLAHSAIHGVmagytgfvsgpingnyayipledvaqatnavntkdhkWAWVRTvtnqpdfvks
PHLTDYLQLENLKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPRVHVAYHRAgprkqiffepKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIqrrkinvgvvgipktvdndvgIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVvaegagqnmIPRTAAqteerdesgnlvFLDVGSWLKTELKkwwardhpgelftvkyidpTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKWAWVrtvtnqpdfvks
PHLTDYLQLENLKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPRVHVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKWAWVRTVTNQPDFVKS
*****YLQLENLKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPRVHVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAG******************NLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKWAWVRTVT********
PHLTDYLQLENLKTYTNPLDQ*RFFHPSHGFYVSPSDVILRQIVYDLSS***********VHVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMI**************NLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKWAWVRTVTNQP*****
PHLTDYLQLENLKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPRVHVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMIPRT********ESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKWAWVRTVTNQPDFVKS
**LTDYLQLENLKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPRVHVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKWAWVRTVTNQPDF***
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PHLTDYLQLENLKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPRVHVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKWAWVRTVTNQPDFVKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query447 2.2.26 [Sep-21-2011]
Q9FIK0444 6-phosphofructokinase 2 O yes no 0.953 0.959 0.779 0.0
Q9M076462 6-phosphofructokinase 6 O no no 0.955 0.924 0.548 1e-140
Q9FKG3530 6-phosphofructokinase 4, no no 0.961 0.811 0.541 1e-139
Q94AA4489 6-phosphofructokinase 3 O no no 0.959 0.877 0.546 1e-137
Q9C5J7485 6-phosphofructokinase 7 O no no 0.957 0.882 0.546 1e-137
Q9M0F9473 6-phosphofructokinase 1 O no no 0.959 0.906 0.539 1e-135
Q8VYN6537 6-phosphofructokinase 5, no no 0.973 0.810 0.45 1e-104
Q59126341 Pyrophosphate--fructose 6 N/A no 0.545 0.715 0.35 3e-29
Q9AGC0341 Pyrophosphate--fructose 6 yes no 0.548 0.718 0.345 2e-28
P65690343 6-phosphofructokinase OS= yes no 0.720 0.938 0.330 4e-28
>sp|Q9FIK0|K6PF2_ARATH 6-phosphofructokinase 2 OS=Arabidopsis thaliana GN=PFK2 PE=1 SV=1 Back     alignment and function desciption
 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/436 (77%), Positives = 369/436 (84%), Gaps = 10/436 (2%)

Query: 9   LENLKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPRVHVAYHRA 68
           L  L+   NPL+ N +FHPS+GFY++PSDVIL Q+ YD S    A S S     VAYHRA
Sbjct: 13  LSGLRHRRNPLEDNPYFHPSNGFYITPSDVILAQVAYDHS----AHSQS----RVAYHRA 64

Query: 69  GPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYST 128
           GPR++I +EP   +AAIVTCGGLCPG+NTVIRELVVGLWELYGVR+I GI AGYRGFYS 
Sbjct: 65  GPRREIMYEPSAVKAAIVTCGGLCPGMNTVIRELVVGLWELYGVREIYGIPAGYRGFYSM 124

Query: 129 TRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAV 188
               + L+PK V  WHK GGTVL TSRGGF L +IVDAI  N +NQVYIIGGDGTMRGAV
Sbjct: 125 --KAVKLDPKAVHDWHKKGGTVLATSRGGFHLQKIVDAIHLNGYNQVYIIGGDGTMRGAV 182

Query: 189 EIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGI 248
           EIF EI  RK+ VG+  IPKTVDNDVGIIDRSFGFQTAVEMAQ+AISAAHVEAESAVNGI
Sbjct: 183 EIFKEISLRKLEVGITVIPKTVDNDVGIIDRSFGFQTAVEMAQEAISAAHVEAESAVNGI 242

Query: 249 GLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVV 308
           GLVKLMGRSTGHIALHATLSSRDVDCCLIPEM+FYLEGKGGL EFL+ RLKE GHAVLVV
Sbjct: 243 GLVKLMGRSTGHIALHATLSSRDVDCCLIPEMDFYLEGKGGLFEFLEKRLKERGHAVLVV 302

Query: 309 AEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTY 368
           AEGAGQ MIPR  +Q +ERDESGN VFLDVG W K+ LK WW R+HP ELFTVKYIDPTY
Sbjct: 303 AEGAGQEMIPRNESQKQERDESGNAVFLDVGVWFKSVLKAWWEREHPDELFTVKYIDPTY 362

Query: 369 MIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTK 428
           MIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFV GPINGNYAYIPLE+VAQ  N VNT+
Sbjct: 363 MIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVPGPINGNYAYIPLEEVAQTKNQVNTR 422

Query: 429 DHKWAWVRTVTNQPDF 444
           DHKWAWVR+VTNQPDF
Sbjct: 423 DHKWAWVRSVTNQPDF 438

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9M076|K6PF6_ARATH 6-phosphofructokinase 6 OS=Arabidopsis thaliana GN=PFK6 PE=1 SV=1 Back     alignment and function description
>sp|Q9FKG3|K6PF4_ARATH 6-phosphofructokinase 4, chloroplastic OS=Arabidopsis thaliana GN=PFK4 PE=1 SV=1 Back     alignment and function description
>sp|Q94AA4|K6PF3_ARATH 6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1 Back     alignment and function description
>sp|Q9C5J7|K6PF7_ARATH 6-phosphofructokinase 7 OS=Arabidopsis thaliana GN=PFK7 PE=1 SV=1 Back     alignment and function description
>sp|Q9M0F9|K6PF1_ARATH 6-phosphofructokinase 1 OS=Arabidopsis thaliana GN=PFK1 PE=1 SV=1 Back     alignment and function description
>sp|Q8VYN6|K6PF5_ARATH 6-phosphofructokinase 5, chloroplastic OS=Arabidopsis thaliana GN=PFK5 PE=1 SV=1 Back     alignment and function description
>sp|Q59126|PFP_AMYME Pyrophosphate--fructose 6-phosphate 1-phosphotransferase OS=Amycolatopsis methanolica GN=pfp PE=1 SV=2 Back     alignment and function description
>sp|Q9AGC0|PFP_AMYMD Pyrophosphate--fructose 6-phosphate 1-phosphotransferase OS=Amycolatopsis mediterranei GN=pfp PE=3 SV=1 Back     alignment and function description
>sp|P65690|K6PF_MYCTU 6-phosphofructokinase OS=Mycobacterium tuberculosis GN=pfkA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query447
224124854472 predicted protein [Populus trichocarpa] 0.984 0.932 0.791 0.0
359497303463 PREDICTED: 6-phosphofructokinase 2-like 0.977 0.943 0.793 0.0
255568098 561 phosphofructokinase, putative [Ricinus c 0.970 0.773 0.786 0.0
449434062454 PREDICTED: 6-phosphofructokinase 2-like 0.975 0.960 0.787 0.0
356520124459 PREDICTED: 6-phosphofructokinase 2-like 0.948 0.923 0.780 0.0
15238818444 6-phosphofructokinase 2 [Arabidopsis tha 0.953 0.959 0.779 0.0
358347084460 6-phosphofructokinase [Medicago truncatu 0.957 0.930 0.761 0.0
116310015477 OSIGBa0124N08.2 [Oryza sativa Indica Gro 0.953 0.893 0.715 0.0
296090663512 unnamed protein product [Vitis vinifera] 0.888 0.775 0.715 0.0
242076148484 hypothetical protein SORBIDRAFT_06g01961 0.948 0.876 0.712 0.0
>gi|224124854|ref|XP_002329965.1| predicted protein [Populus trichocarpa] gi|222871987|gb|EEF09118.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/446 (79%), Positives = 397/446 (89%), Gaps = 6/446 (1%)

Query: 1   PHLTDYLQLENLKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPR 60
           PHLTDYL   NLK   NPL++N  +HP  GFY++ S+V+L +I+ DLS+   A S   P+
Sbjct: 32  PHLTDYLP--NLKPLPNPLEKNTLYHPPAGFYINQSEVVLGKIIVDLSADSEAVSSHSPQ 89

Query: 61  VHVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQA 120
           V  AY+RAGPR Q+FFEPK+ +AAIVTCGGLCPG+NTVIRELVVGLWE+YGVRQI G+ A
Sbjct: 90  V--AYNRAGPRWQVFFEPKDIKAAIVTCGGLCPGMNTVIRELVVGLWEMYGVRQIYGVTA 147

Query: 121 GYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGG 180
           GYRGFYS  R+P+ LNPK+V  WHKLGGT LETSRGGFDL++IVDAI+ + FNQVYIIGG
Sbjct: 148 GYRGFYS--RDPIELNPKLVHNWHKLGGTALETSRGGFDLNKIVDAIEHHGFNQVYIIGG 205

Query: 181 DGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVE 240
           DGTMRGAV IF+EIQRRK+N+ V GIPKTVDND+GIIDRSFGFQTAVEMAQQAI+AAH+E
Sbjct: 206 DGTMRGAVNIFNEIQRRKLNIAVAGIPKTVDNDIGIIDRSFGFQTAVEMAQQAINAAHIE 265

Query: 241 AESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE 300
           AESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPE++FYLEG+GGL+EFL+ RLKE
Sbjct: 266 AESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEIDFYLEGEGGLLEFLEKRLKE 325

Query: 301 NGHAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFT 360
           NGHAVLVVAEGAGQ+MIPRT AQ EERDESGNLVFLD G+WLK+ELK WW RDH  ELFT
Sbjct: 326 NGHAVLVVAEGAGQDMIPRTEAQKEERDESGNLVFLDFGAWLKSELKNWWTRDHANELFT 385

Query: 361 VKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQ 420
           VKYIDPTYMIRAVPANATDNLYCTL+A+SAIHGVMAGYTGFVSG INGNYAYIP+E+VA 
Sbjct: 386 VKYIDPTYMIRAVPANATDNLYCTLVAYSAIHGVMAGYTGFVSGLINGNYAYIPVEEVAH 445

Query: 421 ATNAVNTKDHKWAWVRTVTNQPDFVK 446
           A N VNTKDHKWAWVR+VTNQPDFVK
Sbjct: 446 ARNEVNTKDHKWAWVRSVTNQPDFVK 471

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359497303|ref|XP_003635479.1| PREDICTED: 6-phosphofructokinase 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255568098|ref|XP_002525025.1| phosphofructokinase, putative [Ricinus communis] gi|223535687|gb|EEF37352.1| phosphofructokinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449434062|ref|XP_004134815.1| PREDICTED: 6-phosphofructokinase 2-like [Cucumis sativus] gi|449491233|ref|XP_004158836.1| PREDICTED: 6-phosphofructokinase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356520124|ref|XP_003528715.1| PREDICTED: 6-phosphofructokinase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|15238818|ref|NP_199592.1| 6-phosphofructokinase 2 [Arabidopsis thaliana] gi|75170846|sp|Q9FIK0.1|K6PF2_ARATH RecName: Full=6-phosphofructokinase 2; AltName: Full=Phosphofructokinase 2; AltName: Full=Phosphohexokinase 2 gi|10177917|dbj|BAB11328.1| pyrophosphate-fructose-6-phosphate 1-phosphotransferase-like protein [Arabidopsis thaliana] gi|15982711|gb|AAL09725.1| AT5g47810/MCA23_13 [Arabidopsis thaliana] gi|19699343|gb|AAL91281.1| AT5g47810/MCA23_13 [Arabidopsis thaliana] gi|332008191|gb|AED95574.1| 6-phosphofructokinase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|358347084|ref|XP_003637592.1| 6-phosphofructokinase [Medicago truncatula] gi|355503527|gb|AES84730.1| 6-phosphofructokinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|116310015|emb|CAH67040.1| OSIGBa0124N08.2 [Oryza sativa Indica Group] gi|116310421|emb|CAH67429.1| OSIGBa0150F01.9 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|296090663|emb|CBI41063.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|242076148|ref|XP_002448010.1| hypothetical protein SORBIDRAFT_06g019610 [Sorghum bicolor] gi|241939193|gb|EES12338.1| hypothetical protein SORBIDRAFT_06g019610 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query447
TAIR|locus:2160897444 PFK2 "phosphofructokinase 2" [ 0.953 0.959 0.779 7.6e-183
TAIR|locus:2134108462 PFK6 "phosphofructokinase 6" [ 0.955 0.924 0.550 2.8e-128
TAIR|locus:2151571530 PFK4 "phosphofructokinase 4" [ 0.961 0.811 0.543 5.3e-127
TAIR|locus:2165046485 PFK7 "phosphofructokinase 7" [ 0.957 0.882 0.548 2.1e-125
TAIR|locus:2136849489 PFK3 "phosphofructokinase 3" [ 0.959 0.877 0.546 2.6e-125
TAIR|locus:2118249473 PFK1 "phosphofructokinase 1" [ 0.959 0.906 0.541 3.5e-123
TAIR|locus:2041208537 PFK5 "phosphofructokinase 5" [ 0.975 0.811 0.455 1.2e-97
UNIPROTKB|P65690343 pfkA "6-phosphofructokinase" [ 0.722 0.941 0.337 6.2e-30
TIGR_CMR|CHY_1349361 CHY_1349 "phosphofructokinase" 0.527 0.653 0.344 1.1e-26
TIGR_CMR|GSU_1703363 GSU_1703 "6-phosphofructokinas 0.534 0.658 0.329 3.8e-25
TAIR|locus:2160897 PFK2 "phosphofructokinase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1774 (629.5 bits), Expect = 7.6e-183, P = 7.6e-183
 Identities = 340/436 (77%), Positives = 369/436 (84%)

Query:     9 LENLKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPRVHVAYHRA 68
             L  L+   NPL+ N +FHPS+GFY++PSDVIL Q+ YD S    A S S     VAYHRA
Sbjct:    13 LSGLRHRRNPLEDNPYFHPSNGFYITPSDVILAQVAYDHS----AHSQS----RVAYHRA 64

Query:    69 GPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYST 128
             GPR++I +EP   +AAIVTCGGLCPG+NTVIRELVVGLWELYGVR+I GI AGYRGFYS 
Sbjct:    65 GPRREIMYEPSAVKAAIVTCGGLCPGMNTVIRELVVGLWELYGVREIYGIPAGYRGFYSM 124

Query:   129 TRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRGAV 188
                 + L+PK V  WHK GGTVL TSRGGF L +IVDAI  N +NQVYIIGGDGTMRGAV
Sbjct:   125 --KAVKLDPKAVHDWHKKGGTVLATSRGGFHLQKIVDAIHLNGYNQVYIIGGDGTMRGAV 182

Query:   189 EIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGI 248
             EIF EI  RK+ VG+  IPKTVDNDVGIIDRSFGFQTAVEMAQ+AISAAHVEAESAVNGI
Sbjct:   183 EIFKEISLRKLEVGITVIPKTVDNDVGIIDRSFGFQTAVEMAQEAISAAHVEAESAVNGI 242

Query:   249 GLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVV 308
             GLVKLMGRSTGHIALHATLSSRDVDCCLIPEM+FYLEGKGGL EFL+ RLKE GHAVLVV
Sbjct:   243 GLVKLMGRSTGHIALHATLSSRDVDCCLIPEMDFYLEGKGGLFEFLEKRLKERGHAVLVV 302

Query:   309 AEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTY 368
             AEGAGQ MIPR  +Q +ERDESGN VFLDVG W K+ LK WW R+HP ELFTVKYIDPTY
Sbjct:   303 AEGAGQEMIPRNESQKQERDESGNAVFLDVGVWFKSVLKAWWEREHPDELFTVKYIDPTY 362

Query:   369 MIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTK 428
             MIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFV GPINGNYAYIPLE+VAQ  N VNT+
Sbjct:   363 MIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVPGPINGNYAYIPLEEVAQTKNQVNTR 422

Query:   429 DHKWAWVRTVTNQPDF 444
             DHKWAWVR+VTNQPDF
Sbjct:   423 DHKWAWVRSVTNQPDF 438
GO:0003872 "6-phosphofructokinase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005945 "6-phosphofructokinase complex" evidence=IEA;ISS
GO:0006096 "glycolysis" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2134108 PFK6 "phosphofructokinase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151571 PFK4 "phosphofructokinase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165046 PFK7 "phosphofructokinase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136849 PFK3 "phosphofructokinase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118249 PFK1 "phosphofructokinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041208 PFK5 "phosphofructokinase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P65690 pfkA "6-phosphofructokinase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1349 CHY_1349 "phosphofructokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1703 GSU_1703 "6-phosphofructokinase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FIK0K6PF2_ARATH2, ., 7, ., 1, ., 1, 10.77980.95300.9594yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.1.110.979
3rd Layer2.7.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
PLN02564484 PLN02564, PLN02564, 6-phosphofructokinase 0.0
PRK06830443 PRK06830, PRK06830, diphosphate--fructose-6-phosph 1e-176
PTZ00286459 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Prov 1e-170
PLN02884411 PLN02884, PLN02884, 6-phosphofructokinase 1e-146
COG0205347 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate 9e-61
TIGR02483324 TIGR02483, PFK_mixed, phosphofructokinase 9e-45
PRK03202320 PRK03202, PRK03202, 6-phosphofructokinase; Provisi 2e-36
PRK14071360 PRK14071, PRK14071, 6-phosphofructokinase; Provisi 7e-32
cd00363338 cd00363, PFK, Phosphofructokinase, a key regulator 4e-31
TIGR02482301 TIGR02482, PFKA_ATP, 6-phosphofructokinase 5e-23
pfam00365279 pfam00365, PFK, Phosphofructokinase 2e-21
cd00763317 cd00763, Bacterial_PFK, Phosphofructokinase, a key 8e-20
PRK06555403 PRK06555, PRK06555, pyrophosphate--fructose-6-phos 9e-19
PTZ00287 1419 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisi 1e-18
cd00765 550 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a 2e-16
TIGR02478746 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukar 2e-14
PRK14072416 PRK14072, PRK14072, 6-phosphofructokinase; Provisi 2e-14
cd00764762 cd00764, Eukaryotic_PFK, Phosphofructokinase, a ke 3e-14
PRK07085 555 PRK07085, PRK07085, diphosphate--fructose-6-phosph 1e-12
TIGR02477 539 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosp 1e-12
cd00764 762 cd00764, Eukaryotic_PFK, Phosphofructokinase, a ke 5e-12
PTZ00468 1328 PTZ00468, PTZ00468, phosphofructokinase family pro 7e-12
TIGR02478 746 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukar 8e-12
PLN03028 610 PLN03028, PLN03028, pyrophosphate--fructose-6-phos 6e-10
PLN02251568 PLN02251, PLN02251, pyrophosphate-dependent phosph 2e-08
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase Back     alignment and domain information 
 Score =  633 bits (1635), Expect = 0.0
 Identities = 256/447 (57%), Positives = 320/447 (71%), Gaps = 15/447 (3%)

Query: 1   PHLTDYLQLENLKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPR 60
           PHLTDYL   +L TY NPL  N  +     ++V+  D + ++IV    S  G        
Sbjct: 20  PHLTDYLP--DLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKIVVHKDSPRG-------- 69

Query: 61  VHVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQA 120
            H  + RAGPR++++FE    RA IVTCGGLCPGLNTVIRE+V GL  +YGV +ILGI  
Sbjct: 70  TH--FRRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDG 127

Query: 121 GYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGG 180
           GYRGFYS  RN + L PK+V   HK GGT+L TSRGG D  +IVD+IQ    NQVYIIGG
Sbjct: 128 GYRGFYS--RNTIPLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGG 185

Query: 181 DGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVE 240
           DGT +GA  I++EI+RR + V V GIPKT+DND+ +ID+SFGF TAVE AQ+AI+AAHVE
Sbjct: 186 DGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE 245

Query: 241 AESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE 300
           AES  NGIGLVKLMGR +G IA++ATL+SRDVDCCLIPE  FYLEGKGGL EF++ RLKE
Sbjct: 246 AESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKE 305

Query: 301 NGHAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFT 360
           NGH V+VVAEGAGQ++I  +   ++ +D SGN + LDVG WL  ++K  + +     +  
Sbjct: 306 NGHMVIVVAEGAGQDLIAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKKMPI-N 364

Query: 361 VKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQ 420
           +KYIDPTYMIRA+P+NA+DN+YCTLLAHSA+HG MAGYTGF  GP+NG +AYIP   + +
Sbjct: 365 LKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAGYTGFTVGPVNGRHAYIPFYRITE 424

Query: 421 ATNAVNTKDHKWAWVRTVTNQPDFVKS 447
             N V   D  WA + + TNQP F+  
Sbjct: 425 KQNKVVITDRMWARLLSSTNQPSFLSP 451

Length = 484
>gnl|CDD|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional Back     alignment and domain information
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase Back     alignment and domain information
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase Back     alignment and domain information
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase Back     alignment and domain information
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase Back     alignment and domain information
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated Back     alignment and domain information
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>gnl|CDD|237600 PRK14072, PRK14072, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate 1-phosphotransferase Back     alignment and domain information
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein; Provisional Back     alignment and domain information
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>gnl|CDD|215543 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 447
PLN02564484 6-phosphofructokinase 100.0
PRK06830443 diphosphate--fructose-6-phosphate 1-phosphotransfe 100.0
PTZ00286459 6-phospho-1-fructokinase; Provisional 100.0
PLN02884411 6-phosphofructokinase 100.0
PRK06555403 pyrophosphate--fructose-6-phosphate 1-phosphotrans 100.0
PRK14071360 6-phosphofructokinase; Provisional 100.0
PRK14072416 6-phosphofructokinase; Provisional 100.0
cd00363338 PFK Phosphofructokinase, a key regulatory enzyme i 100.0
TIGR02483324 PFK_mixed phosphofructokinase. Members of this fam 100.0
cd00763317 Bacterial_PFK Phosphofructokinase, a key regulator 100.0
TIGR02482301 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokin 100.0
PRK03202320 6-phosphofructokinase; Provisional 100.0
COG0205347 PfkA 6-phosphofructokinase [Carbohydrate transport 100.0
TIGR02477539 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosp 100.0
PRK07085555 diphosphate--fructose-6-phosphate 1-phosphotransfe 100.0
PLN03028 610 pyrophosphate--fructose-6-phosphate 1-phosphotrans 100.0
cd00765550 Pyrophosphate_PFK Phosphofructokinase, a key regul 100.0
TIGR02478 745 6PF1K_euk 6-phosphofructokinase, eukaryotic type. 100.0
cd00764 762 Eukaryotic_PFK Phosphofructokinase, a key regulato 100.0
TIGR02478745 6PF1K_euk 6-phosphofructokinase, eukaryotic type. 100.0
PLN02251568 pyrophosphate-dependent phosphofructokinase 100.0
PTZ00468 1328 phosphofructokinase family protein; Provisional 100.0
PF00365282 PFK: Phosphofructokinase; InterPro: IPR000023 The 100.0
cd00764762 Eukaryotic_PFK Phosphofructokinase, a key regulato 100.0
PTZ00287 1419 6-phosphofructokinase; Provisional 100.0
PTZ00287 1419 6-phosphofructokinase; Provisional 100.0
PTZ00468 1328 phosphofructokinase family protein; Provisional 100.0
KOG2440 666 consensus Pyrophosphate-dependent phosphofructo-1- 100.0
KOG2440 666 consensus Pyrophosphate-dependent phosphofructo-1- 100.0
COG3199355 Predicted inorganic polyphosphate/ATP-NAD kinase [ 93.53
PF00532279 Peripla_BP_1: Periplasmic binding proteins and sug 92.89
PRK14077287 pnk inorganic polyphosphate/ATP-NAD kinase; Provis 92.69
PRK04885265 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 92.48
PRK00561259 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 92.06
PRK04761246 ppnK inorganic polyphosphate/ATP-NAD kinase; Revie 91.98
PRK03372306 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 91.33
cd01537264 PBP1_Repressors_Sugar_Binding_like Ligand-binding 91.16
PRK03501264 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 90.89
PF01513285 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Me 90.63
PRK01911292 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 90.31
PRK14075256 pnk inorganic polyphosphate/ATP-NAD kinase; Provis 89.95
PLN02929301 NADH kinase 89.62
PRK02649305 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 89.32
PRK03708277 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 89.22
PRK04539296 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 89.03
PRK03378292 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 88.97
TIGR01917431 gly_red_sel_B glycine reductase, selenoprotein B. 88.24
TIGR01918431 various_sel_PB selenoprotein B, glycine/betaine/sa 87.89
PRK01231295 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 87.35
PLN02935508 Bifunctional NADH kinase/NAD(+) kinase 86.32
PRK02231272 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 84.45
PRK02645305 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 83.77
PRK02155291 ppnK NAD(+)/NADH kinase family protein; Provisiona 83.42
PRK11914306 diacylglycerol kinase; Reviewed 82.8
PRK01185271 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 82.77
TIGR00288160 conserved hypothetical protein TIGR00288. This fam 82.27
PRK13054300 lipid kinase; Reviewed 82.17
PRK13337304 putative lipid kinase; Reviewed 81.91
cd06321271 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-b 81.4
>PLN02564 6-phosphofructokinase Back     alignment and domain information 
Probab=100.00  E-value=1.6e-125  Score=984.89  Aligned_cols=432  Identities=58%  Similarity=1.001  Sum_probs=408.1

Q ss_pred             CccccccCCCCCCCcCCCCCCCCCCCCCcccccCCCceEEEEeeeccccccCCCCCCCCCcceeEEecCCccccccCCCC
Q 042534            1 PHLTDYLQLENLKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPRVHVAYHRAGPRKQIFFEPKN   80 (447)
Q Consensus         1 p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~~~f~p~~   80 (447)
                      |||+||+  |++|+++||+..++.++....+||+|+|+|++++......          ....+|+|||||++|||+|++
T Consensus        20 ~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~----------~~~~~~~~agpr~~i~f~p~~   87 (484)
T PLN02564         20 PHLTDYL--PDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKIVVHKDS----------PRGTHFRRAGPRQKVYFESDE   87 (484)
T ss_pred             cchhhcC--CCcCCCCCccCCCcccccccceEeCCCCeEEEeecccccc----------cCCccceecCCcceEEEcCcc
Confidence            8999998  9999999999999999988999999999999988776321          234689999999999999999


Q ss_pred             ceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcccH
Q 042534           81 TRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDL  160 (447)
Q Consensus        81 ~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~  160 (447)
                      +|||||||||||||||+|||++|+++++.|++.+||||++||+||++++  +++|+++.|++|+++|||+|||||++++.
T Consensus        88 ~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~--~i~Lt~~~V~~i~~~GGTiLGTsR~~~~~  165 (484)
T PLN02564         88 VRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRN--TIPLTPKVVNDIHKRGGTILGTSRGGHDT  165 (484)
T ss_pred             eEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCC--eEeCCHHHhhcHhhCCCceeccCCCcchH
Confidence            9999999999999999999999999987888889999999999999998  99999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHHHh
Q 042534          161 HQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVE  240 (447)
Q Consensus       161 ~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~~  240 (447)
                      ++++++|++++||+||+|||||||++|++|+++++++|++|+||||||||||||++||+|||||||+++++++|+++++|
T Consensus       166 ~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~~~~~aI~~i~~t  245 (484)
T PLN02564        166 SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE  245 (484)
T ss_pred             HHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhhCCcEEEEEecCCCCCCchhh
Q 042534          241 AESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMIPRT  320 (447)
Q Consensus       241 A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~k~~~vIvvaEGa~~~~~~~~  320 (447)
                      |.|+++||+|||+|||+|||||++++||+++||+|||||.||+++++.+++++|++|+++++|+|||||||++++++.+.
T Consensus       246 A~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~pf~le~~~~ll~~i~~rl~~~~~~VIVVAEGagq~~~~~~  325 (484)
T PLN02564        246 AESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKENGHMVIVVAEGAGQDLIAES  325 (484)
T ss_pred             HHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCCCCcchHHHHHHHHHHHHhccCCEEEEEeCCCccchhhhh
Confidence            99987899999999999999999999999559999999999999998899999999999999999999999998877655


Q ss_pred             hhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHHHHcCCCc
Q 042534          321 AAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTG  400 (447)
Q Consensus       321 ~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~~~~G~tg  400 (447)
                      .....++|++||++|.+++.||+++|+++++++. +..+++|+++|||+|||++|+++||+||++||+.|||++|+|+||
T Consensus       326 ~~~~~~~Da~Gn~~l~dig~~La~~I~~~~~~~~-~~~~~~r~i~lgy~qRgg~p~a~Dri~a~~lG~~AV~~~~aG~tg  404 (484)
T PLN02564        326 MESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVK-KMPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAGYTG  404 (484)
T ss_pred             hcccccccccCCcccCcHHHHHHHHHHHHhhhcc-cCCceEEEecCCchhcCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            4333468999999999999999999999994321 344899999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCEEEEecHHHHHhhcCCCCCChHHHHHHHHhcCCCCCCCC
Q 042534          401 FVSGPINGNYAYIPLEDVAQATNAVNTKDHKWAWVRTVTNQPDFVKS  447 (447)
Q Consensus       401 ~~vg~~~~~~~~vPl~~v~~~~k~v~~~~~~w~~~~~~t~qp~~~~~  447 (447)
                      +||+++|++++++||++++..+|+|++++++|++++++||||+|++|
T Consensus       405 ~mVg~~~~~~~~vPi~~~~~~~~~v~~~~~~w~~~l~~t~qp~f~~~  451 (484)
T PLN02564        405 FTVGPVNGRHAYIPFYRITEKQNKVVITDRMWARLLSSTNQPSFLSP  451 (484)
T ss_pred             EEEEEECCEEEEEEHHHHhccCCccCCChHHHHHHHHHcCCCCccCc
Confidence            99999999999999999999999999999999999999999999874

>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>PTZ00286 6-phospho-1-fructokinase; Provisional Back     alignment and domain information
>PLN02884 6-phosphofructokinase Back     alignment and domain information
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated Back     alignment and domain information
>PRK14071 6-phosphofructokinase; Provisional Back     alignment and domain information
>PRK14072 6-phosphofructokinase; Provisional Back     alignment and domain information
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>TIGR02483 PFK_mixed phosphofructokinase Back     alignment and domain information
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>TIGR02482 PFKA_ATP 6-phosphofructokinase Back     alignment and domain information
>PRK03202 6-phosphofructokinase; Provisional Back     alignment and domain information
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase Back     alignment and domain information
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>PLN02251 pyrophosphate-dependent phosphofructokinase Back     alignment and domain information
>PTZ00468 phosphofructokinase family protein; Provisional Back     alignment and domain information
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes [] Back     alignment and domain information
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>PTZ00287 6-phosphofructokinase; Provisional Back     alignment and domain information
>PTZ00287 6-phosphofructokinase; Provisional Back     alignment and domain information
>PTZ00468 phosphofructokinase family protein; Provisional Back     alignment and domain information
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only] Back     alignment and domain information
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators Back     alignment and domain information
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed Back     alignment and domain information
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems Back     alignment and domain information
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2 Back     alignment and domain information
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PLN02929 NADH kinase Back     alignment and domain information
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B Back     alignment and domain information
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family Back     alignment and domain information
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase Back     alignment and domain information
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional Back     alignment and domain information
>PRK11914 diacylglycerol kinase; Reviewed Back     alignment and domain information
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>TIGR00288 conserved hypothetical protein TIGR00288 Back     alignment and domain information
>PRK13054 lipid kinase; Reviewed Back     alignment and domain information
>PRK13337 putative lipid kinase; Reviewed Back     alignment and domain information
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
2hig_A487 Crystal Structure Of Phosphofructokinase Apoenzyme 1e-68
1zxx_A319 The Crystal Structure Of Phosphofructokinase From L 1e-15
1kzh_A 555 Structure Of A Pyrophosphate-dependent Phosphofruct 7e-14
1mto_A319 Crystal Structure Of A Phosphofructokinase Mutant F 2e-13
3pfk_A319 Phosphofructokinase. Structure And Control Length = 5e-13
6pfk_A319 Phosphofructokinase, Inhibited T-State Length = 319 5e-13
1pfk_A320 Crystal Structure Of The Complex Of Phosphofructoki 1e-12
4a3s_A319 Crystal Structure Of Pfk From Bacillus Subtilis Len 5e-12
3o8o_A 787 Structure Of Phosphofructokinase From Saccharomyces 9e-11
3opy_A 989 Crystal Structure Of Pichia Pastoris Phosphofructok 6e-10
3opy_B 941 Crystal Structure Of Pichia Pastoris Phosphofructok 1e-08
3o8o_B766 Structure Of Phosphofructokinase From Saccharomyces 2e-08
3o8l_A 762 Structure Of Phosphofructokinase From Rabbit Skelet 7e-08
3k2q_A420 Crystal Structure Of Pyrophosphate-Dependent Phosph 3e-06
3hno_A419 Crystal Structure Of Pyrophosphate-Dependent Phosph 1e-04
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From Trypanosoma Brucei. Length = 487 Back     alignment and structure 
Iteration: 1

 Score =  257 bits (656), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 147/376 (39%), Positives = 216/376 (57%), Gaps = 13/376 (3%)
Query: 68  AGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYS 127
           A  R +I F P  T   IVTCGG+CPGLN VIR + +    +Y V++++G + GY G   
Sbjct: 85  AAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSK 144
Query: 128 T-TRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIGGDGTMRG 186
             ++  + L+   V   H  GGT+L +SRG  D  ++VD ++    N ++ +GGDGT RG
Sbjct: 145 KGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRG 204
Query: 187 AVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVN 246
           A+ I  E +RR +++ V G+PKT+DND+    R+FGFQTAVE A QAI AA+ EA SA  
Sbjct: 205 ALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANY 264
Query: 247 GIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVL 306
           G+G+VKLMGR +G IA  A ++S   + CL+PE       +  ++  L+ R   +   V+
Sbjct: 265 GVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPI---SEQEVMSLLERRFCHSRSCVI 321
Query: 307 VVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARD---HPGELFTVKY 363
           +VAEG GQ+        +   D SGN   +D+G  L  ++K +   +   +P    TVKY
Sbjct: 322 IVAEGFGQDW----GRGSGGYDASGNKKLIDIGVILTEKVKAFLKANKSRYPDS--TVKY 375
Query: 364 IDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDVAQATN 423
           IDP+YMIRA P +A D L+C  LA  A+H  MAG TG +    + NY  +P++       
Sbjct: 376 IDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATSVRR 435
Query: 424 AVNTKDHKWAWVRTVT 439
            ++ +   W  VR +T
Sbjct: 436 VLDLRGQLWRQVREIT 451
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From Lactobacillus Delbrueckii Length = 319 Back     alignment and structure
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase From The Lyme Disease Spirochete Borrelia Burgdorferi Length = 555 Back     alignment and structure
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From Bacillus Stearothermophilus Bound With Fructose-6-Phosphate Length = 319 Back     alignment and structure
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control Length = 319 Back     alignment and structure
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State Length = 319 Back     alignment and structure
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase From Escherichia Coli With Its Reaction Products Length = 320 Back     alignment and structure
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis Length = 319 Back     alignment and structure
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces Cerevisiae Length = 787 Back     alignment and structure
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase In The T- State Length = 989 Back     alignment and structure
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase In The T- State Length = 941 Back     alignment and structure
>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces Cerevisiae Length = 766 Back     alignment and structure
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal Muscle Length = 762 Back     alignment and structure
>pdb|3K2Q|A Chain A, Crystal Structure Of Pyrophosphate-Dependent Phosphofructokinase From Marinobacter Aquaeolei, Northeast Structural Genomics Consortium Target Mqr88 Length = 420 Back     alignment and structure
>pdb|3HNO|A Chain A, Crystal Structure Of Pyrophosphate-Dependent Phosphofructokinase From Nitrosospira Multiformis. Northeast Structural Genomics Consortium Target Id Nmr42 Length = 419 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
2hig_A487 6-phospho-1-fructokinase; transferase; 2.40A {Tryp 0.0
2f48_A555 Diphosphate--fructose-6-phosphate 1-phosphotransf; 4e-74
3hno_A419 Pyrophosphate-dependent phosphofructokinase; struc 4e-45
3opy_A989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 2e-42
3opy_A 989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 2e-33
1zxx_A319 6-phosphofructokinase; allosteric regulation, lact 3e-42
3o8l_A762 6-phosphofructokinase, muscle type; transferase; H 5e-42
3o8l_A 762 6-phosphofructokinase, muscle type; transferase; H 4e-34
3o8o_B766 6-phosphofructokinase subunit beta; transferase; H 1e-41
3o8o_B 766 6-phosphofructokinase subunit beta; transferase; H 8e-30
4a3s_A319 6-phosphofructokinase; transferase, glycolysis, de 1e-41
1pfk_A320 Phosphofructokinase; transferase(phosphotransferas 3e-41
3o8o_A787 6-phosphofructokinase subunit alpha; transferase; 6e-41
3o8o_A 787 6-phosphofructokinase subunit alpha; transferase; 2e-32
3opy_B941 6-phosphofructo-1-kinase beta-subunit; ATP binding 2e-39
3opy_B 941 6-phosphofructo-1-kinase beta-subunit; ATP binding 1e-31
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* Length = 487 Back     alignment and structure
 Score =  515 bits (1328), Expect = 0.0
 Identities = 153/441 (34%), Positives = 229/441 (51%), Gaps = 16/441 (3%)

Query: 1   PHLTDYLQLENLKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPR 60
                 +       Y NP  +    + S   +   +D I+         +        P 
Sbjct: 25  TQEDLKVDRLPGADYPNPSKK----YSSRTEFRDKTDYIMYNPRPRDEPSSENPVSVSP- 79

Query: 61  VHVAYHRAGPRKQIFFEPKNTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQA 120
             +    A  R +I F P  T   IVTCGG+CPGLN VIR + +    +Y V++++G + 
Sbjct: 80  --LLCELAAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRF 137

Query: 121 GYRGFYS-TTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQTNAFNQVYIIG 179
           GY G     ++  + L+   V   H  GGT+L +SRG  D  ++VD ++    N ++ +G
Sbjct: 138 GYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVG 197

Query: 180 GDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHV 239
           GDGT RGA+ I  E +RR +++ V G+PKT+DND+    R+FGFQTAVE A QAI AA+ 
Sbjct: 198 GDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYA 257

Query: 240 EAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLK 299
           EA SA  G+G+VKLMGR +G IA  A ++S   + CL+PE     +    ++  L+ R  
Sbjct: 258 EAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSLLERRFC 314

Query: 300 ENGHAVLVVAEGAGQNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGEL- 358
            +   V++VAEG GQ+        +   D SGN   +D+G  L  ++K +   +      
Sbjct: 315 HSRSCVIIVAEGFGQDWGRG----SGGYDASGNKKLIDIGVILTEKVKAFLKANKSRYPD 370

Query: 359 FTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAYIPLEDV 418
            TVKYIDP+YMIRA P +A D L+C  LA  A+H  MAG TG +    + NY  +P++  
Sbjct: 371 STVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVA 430

Query: 419 AQATNAVNTKDHKWAWVRTVT 439
                 ++ +   W  VR +T
Sbjct: 431 TSVRRVLDLRGQLWRQVREIT 451
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A* Length = 555 Back     alignment and structure
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A Length = 419 Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 989 Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 989 Back     alignment and structure
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp} Length = 319 Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Length = 762 Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Length = 762 Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 766 Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 766 Back     alignment and structure
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A* Length = 319 Back     alignment and structure
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A Length = 320 Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 787 Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 787 Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 941 Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 941 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query447
2hig_A487 6-phospho-1-fructokinase; transferase; 2.40A {Tryp 100.0
1zxx_A319 6-phosphofructokinase; allosteric regulation, lact 100.0
1pfk_A320 Phosphofructokinase; transferase(phosphotransferas 100.0
3hno_A419 Pyrophosphate-dependent phosphofructokinase; struc 100.0
4a3s_A319 6-phosphofructokinase; transferase, glycolysis, de 100.0
2f48_A555 Diphosphate--fructose-6-phosphate 1-phosphotransf; 100.0
3o8l_A 762 6-phosphofructokinase, muscle type; transferase; H 100.0
3o8l_A762 6-phosphofructokinase, muscle type; transferase; H 100.0
3o8o_B 766 6-phosphofructokinase subunit beta; transferase; H 100.0
3o8o_A 787 6-phosphofructokinase subunit alpha; transferase; 100.0
3opy_A 989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 100.0
3opy_B 941 6-phosphofructo-1-kinase beta-subunit; ATP binding 100.0
3o8o_A787 6-phosphofructokinase subunit alpha; transferase; 100.0
3opy_B941 6-phosphofructo-1-kinase beta-subunit; ATP binding 100.0
3o8o_B766 6-phosphofructokinase subunit beta; transferase; H 100.0
3opy_A989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 100.0
2an1_A292 Putative kinase; structural genomics, PSI, protein 95.75
3g1w_A305 Sugar ABC transporter; sugar-binding protein, baci 94.78
2i2c_A272 Probable inorganic polyphosphate/ATP-NAD kinase 1; 93.27
1z0s_A278 Probable inorganic polyphosphate/ATP-NAD kinase; A 93.13
3gbv_A304 Putative LACI-family transcriptional regulator; NY 89.23
3l49_A291 ABC sugar (ribose) transporter, periplasmic substr 88.0
3m9w_A313 D-xylose-binding periplasmic protein; xylose bindi 87.34
3k4h_A292 Putative transcriptional regulator; structural gen 87.12
3e3m_A355 Transcriptional regulator, LACI family; structural 84.01
3kjx_A344 Transcriptional regulator, LACI family; LACL famil 82.63
3dbi_A338 Sugar-binding transcriptional regulator, LACI FAM; 82.28
1u0t_A307 Inorganic polyphosphate/ATP-NAD kinase; alpha-beta 82.03
3pfn_A365 NAD kinase; structural genomics consortium, SNP, S 80.07
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* Back     alignment and structure
Probab=100.00  E-value=4e-111  Score=881.05  Aligned_cols=414  Identities=37%  Similarity=0.614  Sum_probs=377.5

Q ss_pred             CCCcCCCCCCCCCCCCCcccccCCCceEEEEeeeccccccCCCCCCCCCcceeEEecCCccccccCCCCceEEEEccCCC
Q 042534           12 LKTYTNPLDQNRFFHPSHGFYVSPSDVILRQIVYDLSSACGAFSDSDPRVHVAYHRAGPRKQIFFEPKNTRAAIVTCGGL   91 (447)
Q Consensus        12 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~~~f~p~~~kiaIvtsGG~   91 (447)
                      +|+|+|||..+..    ..+||+|+|+|++++....+.. ....|+  .+..+|++||||++|||+|+.+||||+|||||
T Consensus        36 ~~~~~~p~~~~~~----~~~~~~~~~~v~~~~~~~~~~~-~~~~~~--~~~~~~~~agpr~~i~f~~~~~rIgIltsGGd  108 (487)
T 2hig_A           36 GADYPNPSKKYSS----RTEFRDKTDYIMYNPRPRDEPS-SENPVS--VSPLLCELAAARSRIHFNPTETTIGIVTCGGI  108 (487)
T ss_dssp             CCCEECTTCCGGG----GGGSBSSCCEEESCCCBCC------CCBB--SCCCEEEECCCBSEESSCGGGCEEEEEECSSC
T ss_pred             CCCCCCcccccCC----CCeeeCCCCEEEEeeeccCCCc-cccccc--cchHHHHHcCCcceeeecCCCcEEEEEecCCC
Confidence            4899999966543    6889999999999877754421 111111  23458999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHHHhcCCeEEEEEccccccccc---CCCCeEECChhhhhchhccCCccccccCCcccHHHHHHHHH
Q 042534           92 CPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYS---TTRNPLVLNPKMVRGWHKLGGTVLETSRGGFDLHQIVDAIQ  168 (447)
Q Consensus        92 ~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~---~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~~~~~iv~~l~  168 (447)
                      |||||++||++|+++..+|++.+||||++||+||++   ++  +++|+|+.|++|+++|||+|||||++.+.++++++|+
T Consensus       109 aPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~--~~~L~~~~V~~i~~~GGTiLGTsR~~~~~~~i~~~l~  186 (487)
T 2hig_A          109 CPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQT--AIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLE  186 (487)
T ss_dssp             CTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTT--CEEECHHHHTTGGGSSSCSSCCCCSCCCHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCC--EEECCHHHHHHHHhCCCCeeccCCCCCCHHHHHHHHH
Confidence            999999999999999877887799999999999975   46  9999999999999999999999999999999999999


Q ss_pred             HcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHHHHHHHhhhhcCCcE
Q 042534          169 TNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGI  248 (447)
Q Consensus       169 ~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai~~i~~~A~S~~~~v  248 (447)
                      +++||+||+||||||+++|++|++++++++++|+||||||||||||++||+|||||||+++++++|+++++||.|+++||
T Consensus       187 ~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~~~~eaId~i~~tA~Sh~~rv  266 (487)
T 2hig_A          187 RLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGV  266 (487)
T ss_dssp             HHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred             HcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCcE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999955799


Q ss_pred             EEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhhCCcEEEEEecCCCCCCchhhhhhhhccc
Q 042534          249 GLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKENGHAVLVVAEGAGQNMIPRTAAQTEERD  328 (447)
Q Consensus       249 ~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~k~~~vIvvaEGa~~~~~~~~~~~~~~~D  328 (447)
                      ||||+|||+|||||++|+||+++||+|||||.||+++   ++++.|++|+++++|+|||||||+++.++...    ..+|
T Consensus       267 ~vVEVMGR~aG~LAl~agLA~g~ad~ilIPE~p~~l~---~i~~~i~~r~~~k~~~IIvVaEGag~~~~~~~----~~~D  339 (487)
T 2hig_A          267 GVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSLLERRFCHSRSCVIIVAEGFGQDWGRGS----GGYD  339 (487)
T ss_dssp             EEEEECCSSCCHHHHHHHHHHTCCSEEECTTSCCCHH---HHHHHHHHHTTSCSEEEEEEETTTTGGGCCC------CBC
T ss_pred             EEEEeCCCCHHHHHHHHHHhhCCCCEEEeCCCCCCHH---HHHHHHHHHHhcCCcEEEEEeCCCcccccccc----cccc
Confidence            9999999999999999999998899999999999998   69999999999999999999999987654322    3579


Q ss_pred             ccCCccccchHHHHHHHHHHHhcccCCCcee---EEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHHHHcCCCceEEEE
Q 042534          329 ESGNLVFLDVGSWLKTELKKWWARDHPGELF---TVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGP  405 (447)
Q Consensus       329 ~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~---~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~~~~G~tg~~vg~  405 (447)
                      ++||+++.+++.+|+++|+++++++  +..+   ++|+++|||+|||++||++||+||++||++||+++++|+||+||++
T Consensus       340 a~G~~~l~~i~~~l~~~i~~~~~~~--g~~~~~f~~R~~~lGh~QRgg~Psa~Dr~la~~lG~~AV~~l~~G~tg~mVgi  417 (487)
T 2hig_A          340 ASGNKKLIDIGVILTEKVKAFLKAN--KSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAM  417 (487)
T ss_dssp             TTSCBCCCCHHHHHHHHHHHHHHTT--TTTSSSCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTTEESEEEEE
T ss_pred             cccCcchhHHHHHHHHHHHHHHhhc--CccccccceEEccCCcCccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            9999999999999999999999654  2224   8999999999999999999999999999999999999999999999


Q ss_pred             eCCEEEEecHHHHHhhcCCCCCChHHHHHHHHhcCCCC
Q 042534          406 INGNYAYIPLEDVAQATNAVNTKDHKWAWVRTVTNQPD  443 (447)
Q Consensus       406 ~~~~~~~vPl~~v~~~~k~v~~~~~~w~~~~~~t~qp~  443 (447)
                      ++++++++||++++++.|.+||+++||++++++++||.
T Consensus       418 ~~~~i~~vPl~ev~~~~k~v~~~~~~w~~~~~~~~~~~  455 (487)
T 2hig_A          418 RHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLG  455 (487)
T ss_dssp             ETTEEEEEEHHHHTTEEEEECTTSHHHHHHHHHSCCCC
T ss_pred             ECCEEEEEEHHHHHccCCCcCcchHHHHHHHHHhCCcc
Confidence            99999999999999999999999999999999999974
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp} Back     alignment and structure
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A Back     alignment and structure
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A Back     alignment and structure
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A* Back     alignment and structure
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A* Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium} Back     alignment and structure
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125} Back     alignment and structure
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A* Back     alignment and structure
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A* Back     alignment and structure
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis} Back     alignment and structure
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} Back     alignment and structure
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A* Back     alignment and structure
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} Back     alignment and structure
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} Back     alignment and structure
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} Back     alignment and structure
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} Back     alignment and structure
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A Back     alignment and structure
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 447
d2f48a1550 c.89.1.1 (A:4-553) Pyrophosphate-dependent phospho 2e-61
d4pfka_319 c.89.1.1 (A:) ATP-dependent phosphofructokinase {B 8e-55
d1pfka_320 c.89.1.1 (A:) ATP-dependent phosphofructokinase {E 9e-51
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent phosphofructokinase {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Length = 550 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphofructokinase
superfamily: Phosphofructokinase
family: Phosphofructokinase
domain: Pyrophosphate-dependent phosphofructokinase
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

 Score =  206 bits (526), Expect = 2e-61
 Identities = 80/416 (19%), Positives = 143/416 (34%), Gaps = 81/416 (19%)

Query: 82  RAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVR 141
              I+  GG  PG + VI  +   + +     ++ G + G  G      + + L   ++ 
Sbjct: 71  NIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLL--ENDKIELTESLIN 128

Query: 142 GWHKLGGTVLETSRGGF-----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQR 196
            +   GG  + +S           ++ +   + N  N + IIGGD +   A  + +  ++
Sbjct: 129 SYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKK 188

Query: 197 RKINVGVVGIPKTVDNDV--GIIDRSFGFQTAVEMAQQAISAAHVEAESAVNGIGLVKLM 254
              N+ V+G+PKT+D D+    I+ SFGF +A ++  + I     +A S       VKLM
Sbjct: 189 NGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLM 248

Query: 255 GRSTGHIALHATLSSRDVDCCLIPEMEFYLE--------------------GKG------ 288
           GRS  H+AL   L +   + C++ E     +                    G        
Sbjct: 249 GRSASHVALECALKTHP-NICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIV 307

Query: 289 ------------GLVEFLDNRLKENGHAVLVVAEGAGQNMIPRT---------------- 320
                        L+  L +   +N      +     + +                    
Sbjct: 308 PEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFI 367

Query: 321 ----AAQTEERDESGNLVF--LDVGSWL----KTELKKWWARDHPGELFTVKYIDPTYMI 370
                    ERD  GN     +          ++ L     R      FT       Y  
Sbjct: 368 QFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTPVDHFFGYEG 427

Query: 371 RAVPANATDNLYCTLLAHSAIHGVMAGYTGFVSGPINGNYAY-------IPLEDVA 419
           R+   +  D+ YC  L ++A+  ++ G TG++S   N N          +PL  + 
Sbjct: 428 RSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVPLTMLM 483
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 319 Back     information, alignment and structure
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]} Length = 320 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query447
d4pfka_319 ATP-dependent phosphofructokinase {Bacillus stearo 100.0
d1pfka_320 ATP-dependent phosphofructokinase {Escherichia col 100.0
d2f48a1550 Pyrophosphate-dependent phosphofructokinase {Lyme 100.0
d1dbqa_282 Purine repressor (PurR), C-terminal domain {Escher 89.29
d1z0sa1249 Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa 87.15
d2qv7a1312 Diacylglycerol kinase DgkB {Staphylococcus aureus 86.5
d1u0ta_302 Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob 84.87
d2bona1295 Lipid kinase YegS {Escherichia coli [TaxId: 562]} 80.13
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphofructokinase
superfamily: Phosphofructokinase
family: Phosphofructokinase
domain: ATP-dependent phosphofructokinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=2.6e-85  Score=657.27  Aligned_cols=311  Identities=24%  Similarity=0.383  Sum_probs=284.7

Q ss_pred             CceEEEEccCCCCccHHHHHHHHHHHHHHhcCCeEEEEEcccccccccCCCCeEECChhhhhchhccCCccccccCCcc-
Q 042534           80 NTRAAIVTCGGLCPGLNTVIRELVVGLWELYGVRQILGIQAGYRGFYSTTRNPLVLNPKMVRGWHKLGGTVLETSRGGF-  158 (447)
Q Consensus        80 ~~kiaIvtsGG~~PGlN~vIr~vv~~~~~~~~~~~V~Gi~~G~~GL~~~~~~~~~L~~~~v~~i~~~GGt~LGssR~~~-  158 (447)
                      ++|||||||||||||||++|+++++.+. .+++ +|||+++||+||++++  +++|+++.+++|+++|||+|||||++. 
T Consensus         1 mkrIaIl~sGG~~pgiNa~i~~~v~~~~-~~~~-~v~g~~~G~~Gl~~~~--~~~l~~~~~~~~~~~gGt~lgs~r~~~~   76 (319)
T d4pfka_           1 MKRIGVLTSGGDSPGMNAAIRSVVRKAI-YHGV-EVYGVYHGYAGLIAGN--IKKLEVGDVGDIIHRGGTILYTARCPEF   76 (319)
T ss_dssp             CCEEEEEEESSCCTTHHHHHHHHHHHHH-HTTC-EEEEESSHHHHHHTTC--EEEECGGGGTTCTTCCSCTTCCCCCTTS
T ss_pred             CCEEEEECcCCCcHHHHHHHHHHHHHHH-HCCC-EEEEEccchHHhcCCC--cccCCHHHHHHHHhcCccccccCCCCcc
Confidence            4799999999999999999999999985 5675 8999999999999999  999999999999999999999999863 


Q ss_pred             ----cHHHHHHHHHHcCCCEEEEecCCCcHHHHHHHHHHHHHcCCcceEeeecccccccccCcCcccChhhHHHHHHHHH
Q 042534          159 ----DLHQIVDAIQTNAFNQVYIIGGDGTMRGAVEIFDEIQRRKINVGVVGIPKTVDNDVGIIDRSFGFQTAVEMAQQAI  234 (447)
Q Consensus       159 ----~~~~iv~~l~~~~Id~L~vIGGdgS~~~A~~L~~~~~~~~~~i~VVgIPkTIDNDi~~tD~s~GFdTAv~~~~~ai  234 (447)
                          ++++++++|++++||+||+|||||||++|++|+++      +++|||||||||||+++||+||||+||+++++++|
T Consensus        77 ~~~~~~~~~~~~l~~~~I~~li~iGG~~s~~~a~~L~~~------~~~vvgIPkTIDNDl~~td~t~Gf~TA~~~~~~~i  150 (319)
T d4pfka_          77 KTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEH------GFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAI  150 (319)
T ss_dssp             SSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCSSCCCTTCSSCBTHHHHHHHHHHHH
T ss_pred             cccchhhhHHHHHHHhccceEEEecCchHHHHHHHHHhc------cCceeeeeeeccCCcCCccccccHHHHHHHHHHHH
Confidence                47899999999999999999999999999999873      68899999999999999999999999999999999


Q ss_pred             HHHHHhhhhcCCcEEEEEecCCccchHHHHHhhccCCccEEecCCCCCCcchhhhHHHHHHHHHhh-CCcEEEEEecCCC
Q 042534          235 SAAHVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPEMEFYLEGKGGLVEFLDNRLKE-NGHAVLVVAEGAG  313 (447)
Q Consensus       235 ~~i~~~A~S~~~~v~iVevMGR~sG~lAl~aaLA~~~ad~ilIPE~~f~le~~~~l~~~i~~r~~~-k~~~vIvvaEGa~  313 (447)
                      ++++.+|+| ++||+|||+|||+|||||++++||++ +|+|||||.||+++   ++++.|++++++ ++|++||||||+.
T Consensus       151 ~~l~~~a~s-~~rv~ivEvMGR~aG~lA~~~~la~~-a~~iliPE~~~~~~---~~~~~i~~~~~~~k~~~ivvvsEG~~  225 (319)
T d4pfka_         151 DKIRDTATS-HERTYVIEVMGRHAGDIALWSGLAGG-AETILIPEADYDMN---DVIARLKRGHERGKKHSIIIVAEGVG  225 (319)
T ss_dssp             HHHHHHHHH-TTCEEEEEECCSSCCHHHHHHHHHTT-CSEEECTTSCCCHH---HHHHHHHHHHHTTCSCEEEEEETTTC
T ss_pred             HHHHhhccc-CcceEEEEecCCCCcHHHHHhhccCC-CcEEEecCCCCCHH---HHHHHHHHHHhhcCCeeEEEEecccc
Confidence            999999988 67999999999999999999999998 99999999999998   699999998865 7899999999996


Q ss_pred             CCCchhhhhhhhcccccCCccccchHHHHHHHHHHHhcccCCCceeEEeEeCCCccccCCCCCHhhHHHHHHHHHHHHHH
Q 042534          314 QNMIPRTAAQTEERDESGNLVFLDVGSWLKTELKKWWARDHPGELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHG  393 (447)
Q Consensus       314 ~~~~~~~~~~~~~~D~~Gn~~l~~ig~~L~~~i~~~~~~~~~~~~~~~k~i~~gy~~Rg~~p~~~Dr~~a~~lG~~AV~~  393 (447)
                      ..                        ..+.+.+++..+       +++|+..|||+|||++|+++||++|++||+.||++
T Consensus       226 ~~------------------------~~~~~~i~~~~g-------~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~  274 (319)
T d4pfka_         226 SG------------------------VDFGRQIQEATG-------FETRVTVLGHVQRGGSPTAFDRVLASRLGARAVEL  274 (319)
T ss_dssp             CH------------------------HHHHHHHHHHHC-------CCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHH
T ss_pred             hh------------------------hhhhhhhhhhcC-------ceeEEeecCchhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            42                        134556666554       56888999999999999999999999999999999


Q ss_pred             HHcCCCceEEEEeCCEEEEecHHHHHhhcCCCCCChHHHHHHH
Q 042534          394 VMAGYTGFVSGPINGNYAYIPLEDVAQATNAVNTKDHKWAWVR  436 (447)
Q Consensus       394 ~~~G~tg~~vg~~~~~~~~vPl~~v~~~~k~v~~~~~~w~~~~  436 (447)
                      +++|+||+||+++++++.++||+++++++|.+|++...+.+.|
T Consensus       275 ~~~g~sg~mv~i~~~~~~~vpl~~v~~~~k~v~~~l~~~~~~l  317 (319)
T d4pfka_         275 LLEGKGGRCVGIQNNQLVDHDIAEALANKHTIDQRMYALSKEL  317 (319)
T ss_dssp             HHTTCCSEEEEEETTEEEEEEHHHHTTSCCCCCHHHHHHHHHH
T ss_pred             HHcCCCCeEEEEECCEEEEEcHHHHHhcCCCCCHHHHHHHHhc
Confidence            9999999999999999999999999999999987654444444
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent phosphofructokinase {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Back     information, alignment and structure
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} Back     information, alignment and structure