Citrus Sinensis ID: 042655
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 392 | ||||||
| 255554150 | 369 | PMP, putative [Ricinus communis] gi|2235 | 0.936 | 0.994 | 0.579 | 1e-116 | |
| 224075619 | 372 | predicted protein [Populus trichocarpa] | 0.938 | 0.989 | 0.594 | 1e-114 | |
| 224053422 | 372 | predicted protein [Populus trichocarpa] | 0.941 | 0.991 | 0.612 | 1e-113 | |
| 359477889 | 380 | PREDICTED: uncharacterized protein LOC10 | 0.897 | 0.926 | 0.574 | 1e-101 | |
| 358249234 | 369 | uncharacterized protein LOC100817223 pre | 0.928 | 0.986 | 0.530 | 1e-100 | |
| 359807490 | 369 | uncharacterized protein LOC100813012 pre | 0.928 | 0.986 | 0.530 | 5e-99 | |
| 15230073 | 364 | putative type 1 membrane protein [Arabid | 0.920 | 0.991 | 0.518 | 3e-90 | |
| 449432430 | 392 | PREDICTED: uncharacterized protein LOC10 | 0.966 | 0.966 | 0.486 | 6e-90 | |
| 357448563 | 373 | hypothetical protein MTR_2g030560 [Medic | 0.931 | 0.978 | 0.518 | 3e-89 | |
| 357448565 | 371 | hypothetical protein MTR_2g030560 [Medic | 0.926 | 0.978 | 0.513 | 2e-88 |
| >gi|255554150|ref|XP_002518115.1| PMP, putative [Ricinus communis] gi|223542711|gb|EEF44248.1| PMP, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/378 (57%), Positives = 281/378 (74%), Gaps = 11/378 (2%)
Query: 17 MDFPTRRIFHLIVFSSLLCFQIRAQAEPSGSVFFIDNPTRQFIRTPSQNDVAQSRSMSLL 76
MDF R +F+L++ SSL C + + E +GS+ FID + Q++R NDV QSR M+ +
Sbjct: 1 MDFQIRSVFNLLILSSLFC-SLASAKERTGSILFIDGNSHQYLR----NDVVQSRLMTPV 55
Query: 77 EVSAAVSVLLGFAPPASLSADGSSKLNEVLVPNPFDRPCAVFMLEVRGVGDPKLTDDLDN 136
EV AAVSVLLGFAPP +LSA GSSKLNEVL+PNPFDRP AVF+LEV GV D ++++ +
Sbjct: 56 EVGAAVSVLLGFAPPVTLSAAGSSKLNEVLMPNPFDRPGAVFLLEVTGVNDLVASENVMS 115
Query: 137 TQLFDAYHSKIIPGPRKADIQIPDEDQVSVVFLDELSEDRTDKEIRNFASWLGGSYVADT 196
+ +A+ K KA I++P E +VSV+ LDE D TDKE+ + SWLGGSY+ +
Sbjct: 116 S---NAFKRKFALDSDKAQIELPGE-EVSVISLDEKLGDFTDKELSDLVSWLGGSYIVNG 171
Query: 197 LEPLNGELIIPVADGDHVKLHMSKKAEKDFALKLLVLSQNIKRAVDVHEHLAQSIRRPAE 256
LE LNGELIIP+A G ++KLHMSKKA+++F LL L N KRA+++HE L+Q+I PAE
Sbjct: 172 LESLNGELIIPLASGANLKLHMSKKADREFIESLLTLFHNSKRAIELHEDLSQAIHGPAE 231
Query: 257 LMMGSFDGIKALQEQYG--LGQQGMKILLATLSRIFDSLQTAYEGQIVGVVFFNETPSPQ 314
L+MG F GIKALQEQYG + QQG+++L+ATLS++ DS Q AY+GQIVGV+ NE + +
Sbjct: 232 LIMGHFHGIKALQEQYGREVVQQGLELLVATLSKMVDSFQVAYKGQIVGVIISNERSTLE 291
Query: 315 SESVLNLMYTSRPSPRMLAETEGSRNATLAAAEVLLVRRTLAWLTGIILIIATLFGIYFL 374
SE +LN+M+TS PS R LAE EGS A EV LVR+TLAWLTG+IL+I+TL GIY L
Sbjct: 292 SEKLLNVMFTSWPSARWLAEAEGSNATDTAIMEVALVRKTLAWLTGLILLISTLIGIYLL 351
Query: 375 LNMPLTRDTLLYSNVKLD 392
LNMPLTRDTLLYSNVKLD
Sbjct: 352 LNMPLTRDTLLYSNVKLD 369
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224075619|ref|XP_002304710.1| predicted protein [Populus trichocarpa] gi|118488094|gb|ABK95867.1| unknown [Populus trichocarpa] gi|222842142|gb|EEE79689.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224053422|ref|XP_002297811.1| predicted protein [Populus trichocarpa] gi|222845069|gb|EEE82616.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|359477889|ref|XP_002267189.2| PREDICTED: uncharacterized protein LOC100245241 [Vitis vinifera] gi|298205266|emb|CBI17325.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|358249234|ref|NP_001240015.1| uncharacterized protein LOC100817223 precursor [Glycine max] gi|255647811|gb|ACU24365.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|359807490|ref|NP_001241398.1| uncharacterized protein LOC100813012 precursor [Glycine max] gi|255635960|gb|ACU18326.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|15230073|ref|NP_189058.1| putative type 1 membrane protein [Arabidopsis thaliana] gi|4206765|gb|AAD11797.1| putative type 1 membrane protein [Arabidopsis thaliana] gi|11994235|dbj|BAB01357.1| unnamed protein product [Arabidopsis thaliana] gi|15450743|gb|AAK96643.1| AT3g24160/MUJ8_16 [Arabidopsis thaliana] gi|21537239|gb|AAM61580.1| type 1 membrane protein, putative [Arabidopsis thaliana] gi|22137144|gb|AAM91417.1| AT3g24160/MUJ8_16 [Arabidopsis thaliana] gi|332643343|gb|AEE76864.1| putative type 1 membrane protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449432430|ref|XP_004134002.1| PREDICTED: uncharacterized protein LOC101215254 [Cucumis sativus] gi|449487528|ref|XP_004157671.1| PREDICTED: uncharacterized LOC101215254 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357448563|ref|XP_003594557.1| hypothetical protein MTR_2g030560 [Medicago truncatula] gi|355483605|gb|AES64808.1| hypothetical protein MTR_2g030560 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|357448565|ref|XP_003594558.1| hypothetical protein MTR_2g030560 [Medicago truncatula] gi|355483606|gb|AES64809.1| hypothetical protein MTR_2g030560 [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 392 | ||||||
| TAIR|locus:2093706 | 364 | PMP "AT3G24160" [Arabidopsis t | 0.920 | 0.991 | 0.491 | 5e-83 |
| TAIR|locus:2093706 PMP "AT3G24160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
Identities = 183/372 (49%), Positives = 252/372 (67%)
Query: 23 RIFHLIVFSSLLCFQIRAQAEPSGSVFFIDNPTRQFIRTPSQNDVAQSRXXXXXXXXXXX 82
+ F++ V + LL R +A SGSVFFID Q++R S ++
Sbjct: 2 KAFYVFVVALLLTLNYRGEA--SGSVFFIDGSNNQYLRPRSSSEALPM---SPVEISAAV 56
Query: 83 XXXXGFAPPASLSADGSSKLNEVLVPNPFDRPCAVFMLEVRGVGDPKLTDDLDNTQLFDA 142
GFAP A+L+ADGSSKLN++L PNPF+RP A F+LE+ G D L ++ L +A
Sbjct: 57 SALLGFAPSATLTADGSSKLNKILKPNPFERPRAAFVLEIAGADDMLLETSPSHSFLGNA 116
Query: 143 YHSKIIPGPRKADIQIPDEDQVSVVFLDELSEDRTDKEIRNFASWLGGSYVADTLEPLNG 202
S I KAD ++PD ++V VV ++E S D TDK+I +FASWLGGSYVA EP +G
Sbjct: 117 IRSSIKSDSYKADTELPD-NEVVVVSVNEPSSDVTDKDINDFASWLGGSYVAGA-EPSSG 174
Query: 203 ELIIPVADGDHVKLHMSKKAEKDFALKLLVLSQNIKRAVDVHEHLAQSIRRPAELMMGSF 262
L IP+A G +V+ ++ K+AE+ FAL LL L QNI++AV V++ L+ I R AEL +G F
Sbjct: 175 LLSIPLAGGANVEFNLEKEAERKFALNLLGLYQNIRQAVSVYDDLSHGIDRTAELTVGRF 234
Query: 263 DGIKALQEQYGLG--QQGMKILLATLSRIFDSLQTAYEGQIVGVVFFNETPSPQSESVLN 320
GI AL ++YG G +QGM +LL+TLS++F+ L+T+++GQIVGV+ +E + +SE++LN
Sbjct: 235 GGIDALAQEYGQGMAKQGMDVLLSTLSKLFNLLETSHKGQIVGVIVLDERVNQESENLLN 294
Query: 321 LMYTSRPSPRMLAETEGSRNATLAAAEVLLVRRTLAWLTGIILIIATLFGIYFLLNMPLT 380
+SR S R + E EG +A + A EV+LVR TLAWLTGIIL+IAT+ G+YFL+NMPLT
Sbjct: 295 FG-SSRSSARSMVEVEGIPSAAIIA-EVILVRLTLAWLTGIILLIATILGVYFLMNMPLT 352
Query: 381 RDTLLYSNVKLD 392
+DTLLYSNVKLD
Sbjct: 353 KDTLLYSNVKLD 364
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.138 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 392 377 0.00089 117 3 11 22 0.36 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 610 (65 KB)
Total size of DFA: 212 KB (2118 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.39u 0.10s 30.49t Elapsed: 00:00:01
Total cpu time: 30.39u 0.10s 30.49t Elapsed: 00:00:01
Start: Fri May 10 18:27:29 2013 End: Fri May 10 18:27:30 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| estExt_fgenesh4_pg.C_LG_III1491 | SubName- Full=Putative uncharacterized protein; (373 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 392 | |||
| KOG4737 | 326 | consensus ATPase membrane sector associated protei | 100.0 | |
| PF07850 | 98 | Renin_r: Renin receptor-like protein; InterPro: IP | 99.73 |
| >KOG4737 consensus ATPase membrane sector associated protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-44 Score=342.81 Aligned_cols=278 Identities=20% Similarity=0.251 Sum_probs=231.8
Q ss_pred CCCceEEEEeCCCCccccCCCchhhhhhcccChHHHHHHHHHHhCcCCCCCCCcCccCCCCCccCCCCCCCCceEEEEEE
Q 042655 43 EPSGSVFFIDNPTRQFIRTPSQNDVAQSRSMSLLEVSAAVSVLLGFAPPASLSADGSSKLNEVLVPNPFDRPCAVFMLEV 122 (392)
Q Consensus 43 ~~~gs~~fid~~~~~~lr~~~~~~~~~~~~~s~~ev~~vvSvlLGfsp~~~l~~~~sskw~gllipnpF~RPrAvv~v~V 122 (392)
.+.+|+-|=|++ +.-++ ..|+++....|||+++++++ |+||.+.||||||||+++|.|
T Consensus 23 ~~P~sl~F~~gn-----------~~l~~-----~~i~dv~~~smG~Svk~d~~------w~gl~v~D~F~rpRa~vmV~V 80 (326)
T KOG4737|consen 23 AAPASLKFPDGN-----------ATLKT-----TLISDVNENSMGFSVKEDLS------WPGLAVGDLFHRPRATVMVMV 80 (326)
T ss_pred cCccceecCCCC-----------Ccccc-----eEchhHHHHhhhheeccccC------CCcccccccccCcccEEEEEE
Confidence 467788887765 33333 67899999999999997777 999999999999999999999
Q ss_pred ccCCC-----------CCCCCCccchhhhhhccccCCCCCcccccccCCCCceEEEeccccc-cccchHHHHhhhhhcCC
Q 042655 123 RGVGD-----------PKLTDDLDNTQLFDAYHSKIIPGPRKADIQIPDEDQVSVVFLDELS-EDRTDKEIRNFASWLGG 190 (392)
Q Consensus 123 ~Gvds-----------l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~ee~v~v~sl~e~~-~d~t~~~l~~~~s~lgg 190 (392)
.|+|- +++.+++.+|++.|.+++.+.+++ ++..|+.-. +++++++.++. ||. .|+.
T Consensus 81 ~Gvd~~~~~G~v~Sy~l~~~~~~G~Ds~~n~I~~~~~e~~-~vv~~~~~~-~~~~~~~~~e~fdd~--vq~~-------- 148 (326)
T KOG4737|consen 81 KGVDLALPPGSVISYPLENAVPFGLDSVANSIFSLFSEET-PVVLQLAPS-RVYAVGKANEVFDDL--VQLT-------- 148 (326)
T ss_pred eccccccCCCceeeeeccCccCcChhHHHHHHHHHhhhcC-Ceeecccch-hHHHhhhHHHHHHHH--HHHH--------
Confidence 99983 467789999999999999999988 667777433 79999888766 554 3555
Q ss_pred cccCCCcccCCCee-eeecCCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCceEEEEeccHHHHH
Q 042655 191 SYVADTLEPLNGEL-IIPVADGDHVKLHMSKKAEKDFALKLLVLSQNIKRAVDVHEHLAQSIRRPAELMMGSFDGIKALQ 269 (392)
Q Consensus 191 sy~~~~l~~~~~~l-~ipl~~g~s~~L~~skeaD~~Fl~EL~~L~~~I~~~v~~h~dls~~~~~~pdLy~~~f~GlkaL~ 269 (392)
+++++++..+ +.|++ +|.+|+..|++|..|++ .+|+|.-+.+.|+|+ +.++.||+|.....|+.++.
T Consensus 149 ----kr~f~~~e~~a~~pl~-----sl~~~~gv~ll~~ad~q-~l~~ig~l~s~~~hl--ae~a~pd~~s~~~a~~d~I~ 216 (326)
T KOG4737|consen 149 ----KRLFQENELLASYPLN-----SLSRNNGVDLLFLADLQ-VLHDIGSLGSTHKHL--AEDASPDLYSLELAGLDEIG 216 (326)
T ss_pred ----HHhhhhhhhhhhcchh-----hhCcccccchhhhhhhh-hhhhhhhhhhHHHHH--HhhcCccHHHHHHHhHHHHH
Confidence 3778888888 88994 99999999999999996 559999999999999 79999999999999999999
Q ss_pred HHhCCC----hhHHHHHHHHHHHHHHHHHHhhCCcE-EEEEEecCCCCCCccccccccccccCCcchhhhhcCccchhhh
Q 042655 270 EQYGLG----QQGMKILLATLSRIFDSLQTAYEGQI-VGVVFFNETPSPQSESVLNLMYTSRPSPRMLAETEGSRNATLA 344 (392)
Q Consensus 270 ~~YG~~----k~a~~lL~~aL~kl~dsl~~aY~G~i-VgvVt~~~~~~~~~~~~~~~~~~~~r~~R~L~e~~~~~n~~~~ 344 (392)
++||++ .+|.|++..|.+|+.++.+.-|+|.- |... + ++ +.|.+| |.. +.+-.
T Consensus 217 kayGe~sv~~~~A~k~ls~A~~kl~~s~~i~~~~iq~v~t~-~-~t--------------~~r~~R---ea~---~lav~ 274 (326)
T KOG4737|consen 217 KAYGEDSVQFLLASKILSGAAEKLTESREIPNHGIQKVDTK-S-KT--------------PTRLAR---EAL---QLAVP 274 (326)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEee-c-cc--------------hhHHHH---Hhh---ceeee
Confidence 999999 79999999999999999999998877 5433 2 23 445566 322 23224
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeeeccc
Q 042655 345 AAEVLLVR-RTLAWLTGIILIIATLFGIYFLLNMPLTRDTLLYSNV 389 (392)
Q Consensus 345 ~~~~~~V~-n~llW~t~IiLlvatLl~i~~L~nMdpgRDSIIYr~v 389 (392)
|+.+|+|+ ||++|+ ||+|.++.|..+|.||+|||||||||||=+
T Consensus 275 y~sdYpviFni~Lw~-mvil~lali~i~y~ia~mDPg~DSIIYRMT 319 (326)
T KOG4737|consen 275 YSSDYPVIFNIFLWL-MVILVLALIYIVYGIASMDPGKDSIIYRMT 319 (326)
T ss_pred ccCCccHHHHHHHHH-HHHHHHHHHHHHhhhhccCCCcceeEEEec
Confidence 55556655 999999 799999999999999999999999999943
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| >PF07850 Renin_r: Renin receptor-like protein; InterPro: IPR012493 The sequences featured in this family are similar to a region of the human renin receptor (Q8NG15 from SWISSPROT) that bears a putative transmembrane spanning segment [] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00