Citrus Sinensis ID: 042663

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
MDASAYPMMQNKDFELHDFIDDPNIDQFIDLIQGENEILEPSFGCTFVSECIVDNQIGSTGEDMFGLNGDANGGVQEEDNDGDDSSGRARTTTTKCTKKPKVDRSRALISERRRRGKMKEKLYALRALVPNITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEASLTGAERQDQESTGNTKKTRVRSKKNPTCKKIMQMGVFQVEERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEVLTPSSA
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEccEEEEEEEccccccHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEEEcccccccHHHHHHHHHHHHHHccccccccccc
ccccccccccccccEEEcccccccHHHHHHHHcccccccccccccHHccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEEEEcccEEEEEEEEcccccHHHHHHHHHHHHcccEEEEEEEEEEcccEEEEEEEEEccccccccHHHHHHHHHHHHHHcccEEEccccc
mdasaypmmqnkdfelhdfiddpnidQFIDLIQgeneilepsfgctfvsecivdnqigstgedmfglngdanggvqeedndgddssgrarttttkctkkpkvdrsRALISERRRRGKMKEKLYALRALVpnitkmdkasivGDAVLYVQDLQMKAKKLKTEIADLEASltgaerqdqestgntkktrvrskknptckkIMQMGVFQVEERGFYVRLVCSKGEGVAVSLYQALESLTSFsiqnsnlttvSEKFVLTFTssvrgsdqnmhlTNMKLWVTKALVNQgfevltpssa
MDASAYPMMQNKDFELHDFIDDPNIDQFIDLIQGENEILEPSFGCTFVSECIVDNQIGSTGEDMFGLNGDANGGVqeedndgddssgrarttttkctkkpkvdrsraliserrrrgkmkeklYALRAlvpnitkmdkaSIVGDAVLYVQDLQMKAKKLKTEIADLEasltgaerqdqestgntkktrvrskknptckkimQMGVFQVEERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSsvrgsdqnMHLTNMKLWVTKALVNQGFevltpssa
MDASAYPMMQNKDFELHDFIDDPNIDQFIDLIQGENEILEPSFGCTFVSECIVDNQIGSTGEDMFGLNGDANGGVQEEDNDGDDSSGRARttttkctkkpkVDrsraliserrrrGKMKEKLYALRALVPNITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEASLTGAERQDQESTGNTKKTRVRSKKNPTCKKIMQMGVFQVEERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEVLTPSSA
*************FELHDFIDDPNIDQFIDLIQGENEILEPSFGCTFVSECIVDNQIGSTG***********************************************************KLYALRALVPNITKMDKASIVGDAVLYVQDLQMKAKKL*************************************CKKIMQMGVFQVEERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEVL*****
*******************************************************************************************************************GKMKEKLYALRALVPNITKMDKASIVGDAVLYVQDLQM***************************************************FQVEERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQG**V******
********MQNKDFELHDFIDDPNIDQFIDLIQGENEILEPSFGCTFVSECIVDNQIGSTGEDMFGLNGDANGGVQ*****************************RALISERRRRGKMKEKLYALRALVPNITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEASLT**********************NPTCKKIMQMGVFQVEERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEVLTPSSA
******PMMQNKDFELHDFIDDPNIDQFIDLIQGENEILEPSFGCTFVSECIVDNQIGS*************************************************ISERRRRGKMKEKLYALRALVPNITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEAS***************************CKKIMQMGVFQVEERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEVLTP***
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MDASAYPMMQNKDFELHDFIDDPNIDQFIDLIQGENEILEPSFGCTFVSECIVDNQIGSTGEDMFGLNGDANGGVQEEDNDGDDSSGRARTTTTKCTKKPKVDRSRALISERRRRGKMKEKLYALRALVPNITKMDKASIVGDAVLYxxxxxxxxxxxxxxxxxxxxxxxxxxxxDQESTGNTKKTRVRSKKNPTCKKIMQMGVFQVEERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEVLTPSSA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query293 2.2.26 [Sep-21-2011]
Q0V7X4318 Transcription factor FER- yes no 0.924 0.852 0.547 2e-76
Q2HIV9248 Transcription factor bHLH no no 0.491 0.580 0.375 1e-18
Q9ZVX2571 Transcription factor ABOR no no 0.484 0.248 0.349 4e-17
Q700E3263 Transcription factor bHLH no no 0.481 0.536 0.341 4e-15
Q9LNJ5590 Transcription factor bHLH no no 0.556 0.276 0.310 2e-14
Q9FIP9592 Transcription factor ATR2 no no 0.525 0.260 0.283 2e-13
Q9LPW3450 Transcription factor SCRE no no 0.440 0.286 0.313 8e-13
O49687589 Transcription factor MYC4 no no 0.508 0.252 0.300 1e-12
Q0WNR2441 Transcription factor bHLH no no 0.484 0.321 0.335 4e-12
Q9LSE2494 Transcription factor ICE1 no no 0.436 0.259 0.309 1e-11
>sp|Q0V7X4|FIT_ARATH Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR OS=Arabidopsis thaliana GN=FIT PE=1 SV=1 Back     alignment and function desciption
 Score =  286 bits (731), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 168/307 (54%), Positives = 211/307 (68%), Gaps = 36/307 (11%)

Query: 13  DFELHDFIDDPNIDQFIDLIQG------ENEILEPSFGCTFVSECIVD-NQ-IGSTGEDM 64
           D ELH+F+ DPN DQFI+LI+G      EN +L+   G    S C +D NQ I +  +D+
Sbjct: 13  DLELHNFLVDPNFDQFINLIRGDHQTIDENPVLDFDLGPLQNSPCFIDENQFIPTPVDDL 72

Query: 65  F---------------GLNGD---ANGGVQEED-NDGDDSSGRARTTTTKCTKKPKVDRS 105
           F                 +GD   A G   EED NDGDDSS  A TT    T+K K DRS
Sbjct: 73  FDELPDLDSNVAESFRSFDGDSVRAGGEEDEEDYNDGDDSS--ATTTNNDGTRKTKTDRS 130

Query: 106 RALISERRRRGKMKEKLYALRALVPNITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADL 165
           R LISERRRRG+MK+KLYALR+LVPNITKMDKASIVGDAVLYVQ+LQ +AKKLK++IA L
Sbjct: 131 RTLISERRRRGRMKDKLYALRSLVPNITKMDKASIVGDAVLYVQELQSQAKKLKSDIAGL 190

Query: 166 EASL--TGAERQDQESTGNTKKTR-VRSKKNPTCKKIMQMGVFQVEERGFYVRLVCSKGE 222
           EASL  TG     QE   + +KT+  R    P  KKI+QM V QVEE+GFYVRLVC+KGE
Sbjct: 191 EASLNSTGGY---QEHAPDAQKTQPFRGINPPASKKIIQMDVIQVEEKGFYVRLVCNKGE 247

Query: 223 GVAVSLYQALESLTSFSIQNSNLTTVS-EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALV 281
           GVA SLY++LESLTSF +QNSNL++ S + ++LT+T      +Q+++L N+KLW+T +L+
Sbjct: 248 GVAPSLYKSLESLTSFQVQNSNLSSPSPDTYLLTYTLDGTCFEQSLNLPNLKLWITGSLL 307

Query: 282 NQGFEVL 288
           NQGFE +
Sbjct: 308 NQGFEFI 314
Transcription factor. Essential protein involved in iron uptake responses. Regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation. Confers enhanced iron mobilization responses at low iron supply.
Arabidopsis thaliana (taxid: 3702)
>sp|Q2HIV9|BH035_ARATH Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZVX2|AMS_ARATH Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana GN=AMS PE=1 SV=2 Back     alignment and function description
>sp|Q700E3|BH027_ARATH Transcription factor bHLH27 OS=Arabidopsis thaliana GN=BHLH27 PE=2 SV=1 Back     alignment and function description
>sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1 Back     alignment and function description
>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LPW3|SCRM2_ARATH Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1 SV=1 Back     alignment and function description
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1 Back     alignment and function description
>sp|Q0WNR2|BH090_ARATH Transcription factor bHLH90 OS=Arabidopsis thaliana GN=BHLH90 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query293
224104721312 predicted protein [Populus trichocarpa] 0.972 0.913 0.567 4e-81
225436456314 PREDICTED: transcription factor FER-LIKE 0.969 0.904 0.564 3e-80
147767896318 hypothetical protein VITISV_009521 [Viti 0.969 0.893 0.557 8e-80
223702432320 putative basic helix-loop-helix protein 0.952 0.871 0.524 4e-77
388497264323 unknown [Lotus japonicus] 0.952 0.863 0.521 1e-76
237687961318 FIT1 [Arabidopsis halleri subsp. gemmife 0.931 0.858 0.543 8e-76
297826127318 Fe-deficiency induced transcription fact 0.931 0.858 0.543 1e-75
388501412323 unknown [Lotus japonicus] 0.952 0.863 0.514 4e-75
30683788318 FER-LIKE IRON DEFICIENCY-INDUCED transcr 0.924 0.852 0.547 1e-74
223702422324 putative basic helix-loop-helix protein 0.928 0.839 0.517 1e-74
>gi|224104721|ref|XP_002313541.1| predicted protein [Populus trichocarpa] gi|222849949|gb|EEE87496.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  307 bits (786), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 177/312 (56%), Positives = 217/312 (69%), Gaps = 27/312 (8%)

Query: 2   DASAYPMMQ--NKDFELHDFIDDPNIDQFIDLIQGENEILEPSFGCTFVSECIVDNQIG- 58
           D +  P+    N  F+L DFID+ N D++IDLI+GENEI   +F C  ++  +VDNQ G 
Sbjct: 3   DPTGNPLAAQTNFQFQLQDFIDEANFDRYIDLIRGENEI--TAFDCDLINGFLVDNQFGL 60

Query: 59  STGE----DMFGLNGDANGGVQEEDN----------DGD-------DSSGRARTTTTKCT 97
           STG+    D+            E+D           DGD       D+     + T   T
Sbjct: 61  STGDKFDCDLINHVPTHTSSAMEQDPNYVPIALPSFDGDMGLEAEEDTDEEDSSGTATTT 120

Query: 98  KKPKVDRSRALISERRRRGKMKEKLYALRALVPNITKMDKASIVGDAVLYVQDLQMKAKK 157
           KK K DRSR LISERRRRG+MKEKLYALR+LVPNITKMDKASI+GDAVLYVQ+LQM+A K
Sbjct: 121 KKTKKDRSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVLYVQELQMQANK 180

Query: 158 LKTEIADLEASLTGAERQDQESTGNTKKTRVRSKKNPTCKKIMQMGVFQVEERGFYVRLV 217
           LK +IA LE+SL G++R  Q S  N K  +  S  +P  KKI++M VFQVEERGFYVRLV
Sbjct: 181 LKADIASLESSLIGSDRY-QGSNRNPKNLQNTSNNHPIRKKIIKMDVFQVEERGFYVRLV 239

Query: 218 CSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVT 277
           C+KGEGVA SLY+ALESLTSFS+QNSNL T SE FVLTFT +V+ S+Q+M+L N+KLWVT
Sbjct: 240 CNKGEGVAPSLYRALESLTSFSVQNSNLATTSEGFVLTFTLNVKESEQDMNLPNLKLWVT 299

Query: 278 KALVNQGFEVLT 289
            AL+NQGFE+LT
Sbjct: 300 GALLNQGFELLT 311

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225436456|ref|XP_002272647.1| PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Vitis vinifera] gi|297734900|emb|CBI17134.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147767896|emb|CAN64538.1| hypothetical protein VITISV_009521 [Vitis vinifera] Back     alignment and taxonomy information
>gi|223702432|gb|ACN21647.1| putative basic helix-loop-helix protein BHLH21 [Lotus japonicus] Back     alignment and taxonomy information
>gi|388497264|gb|AFK36698.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|237687961|gb|ACR14981.1| FIT1 [Arabidopsis halleri subsp. gemmifera] Back     alignment and taxonomy information
>gi|297826127|ref|XP_002880946.1| Fe-deficiency induced transcription factor 1 [Arabidopsis lyrata subsp. lyrata] gi|297326785|gb|EFH57205.1| Fe-deficiency induced transcription factor 1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|388501412|gb|AFK38772.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|30683788|ref|NP_850114.1| FER-LIKE IRON DEFICIENCY-INDUCED transcription factor [Arabidopsis thaliana] gi|122242304|sp|Q0V7X4.1|FIT_ARATH RecName: Full=Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR; AltName: Full=Basic helix-loop-helix protein 29; Short=AtbHLH29; Short=bHLH 29; AltName: Full=FER-LIKE REGULATOR OF IRON UPTAKE; AltName: Full=Transcription factor EN 43; AltName: Full=Transcription factor Fe-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1; AltName: Full=bHLH transcription factor bHLH029 gi|111074360|gb|ABH04553.1| At2g28160 [Arabidopsis thaliana] gi|225898152|dbj|BAH30406.1| hypothetical protein [Arabidopsis thaliana] gi|330252992|gb|AEC08086.1| FER-LIKE IRON DEFICIENCY-INDUCED transcription factor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|223702422|gb|ACN21642.1| putative basic helix-loop-helix protein BHLH20 [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query293
TAIR|locus:2046198318 FRU "AT2G28160" [Arabidopsis t 0.907 0.836 0.476 1.1e-53
UNIPROTKB|Q7XVB7383 OSJNBa0072D21.7 "OSJNBa0072D21 0.313 0.240 0.291 1.3e-16
TAIR|locus:2039445571 AMS "AT2G16910" [Arabidopsis t 0.197 0.101 0.5 4e-12
UNIPROTKB|Q84LF9310 RERJ1 "Transcription Factor" [ 0.177 0.167 0.576 7.6e-12
TAIR|locus:2178555592 MYC3 "AT5G46760" [Arabidopsis 0.460 0.228 0.271 1.7e-11
TAIR|locus:2141055589 MYC4 "AT4G17880" [Arabidopsis 0.522 0.259 0.283 4.1e-11
UNIPROTKB|Q7XKP5293 OSJNBb0013O03.11 "OSJNBb0013O0 0.266 0.266 0.4 4e-10
TAIR|locus:2035609623 MYC2 "AT1G32640" [Arabidopsis 0.450 0.211 0.314 1.7e-09
UNIPROTKB|Q6YUS3552 OSJNBb0088N06.15 "BHLH protein 0.279 0.148 0.387 9.4e-09
TAIR|locus:2141206207 DYT1 "AT4G21330" [Arabidopsis 0.433 0.613 0.318 1.5e-08
TAIR|locus:2046198 FRU "AT2G28160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 133/279 (47%), Positives = 173/279 (62%)

Query:    13 DFELHDFIDDPNIDQFIDLIQGENEILEPSFGCTFVSECIVDNQIGSTGEDMFGLNGDAN 72
             DF+L    + P    FID    EN+ +       F     +D+ +  +     G +  A 
Sbjct:    46 DFDLGPLQNSPC---FID----ENQFIPTPVDDLFDELPDLDSNVAESFRSFDGDSVRAG 98

Query:    73 GGVQEED-NDGDDSSGRARXXXXXXXXXXXVDXXXXXXXXXXXXGKMKEKLYALRALVPN 131
             G   EED NDGDDSS  A             D            G+MK+KLYALR+LVPN
Sbjct:    99 GEEDEEDYNDGDDSS--ATTTNNDGTRKTKTDRSRTLISERRRRGRMKDKLYALRSLVPN 156

Query:   132 ITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEASLTGAERQDQESTGNTKKTR-VRS 190
             ITKMDKASIVGDAVLYVQ+LQ +AKKLK++IA LEASL       QE   + +KT+  R 
Sbjct:   157 ITKMDKASIVGDAVLYVQELQSQAKKLKSDIAGLEASLNSTGGY-QEHAPDAQKTQPFRG 215

Query:   191 KKNPTCKKIMQMGVFQVEERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS- 249
                P  KKI+QM V QVEE+GFYVRLVC+KGEGVA SLY++LESLTSF +QNSNL++ S 
Sbjct:   216 INPPASKKIIQMDVIQVEEKGFYVRLVCNKGEGVAPSLYKSLESLTSFQVQNSNLSSPSP 275

Query:   250 EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEVL 288
             + ++LT+T      +Q+++L N+KLW+T +L+NQGFE +
Sbjct:   276 DTYLLTYTLDGTCFEQSLNLPNLKLWITGSLLNQGFEFI 314
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0010039 "response to iron ion" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0034756 "regulation of iron ion transport" evidence=IMP
GO:0071281 "cellular response to iron ion" evidence=IEP
GO:0071369 "cellular response to ethylene stimulus" evidence=IEP
GO:0071732 "cellular response to nitric oxide" evidence=IEP
GO:0000041 "transition metal ion transport" evidence=RCA
UNIPROTKB|Q7XVB7 OSJNBa0072D21.7 "OSJNBa0072D21.7 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2039445 AMS "AT2G16910" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q84LF9 RERJ1 "Transcription Factor" [Oryza sativa (taxid:4530)] Back     alignment and assigned GO terms
TAIR|locus:2178555 MYC3 "AT5G46760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141055 MYC4 "AT4G17880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XKP5 OSJNBb0013O03.11 "OSJNBb0013O03.11 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2035609 MYC2 "AT1G32640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6YUS3 OSJNBb0088N06.15 "BHLH protein-like" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2141206 DYT1 "AT4G21330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0V7X4FIT_ARATHNo assigned EC number0.54720.92490.8522yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_IX001503
hypothetical protein (312 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query293
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 4e-11
smart0035353 smart00353, HLH, helix loop helix domain 6e-10
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 1e-08
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information 
 Score = 56.8 bits (138), Expect = 4e-11
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 104 RSRALISERRRRGKMKEKLYALRALVPN---ITKMDKASIVGDAVLYVQDLQ 152
           R    + ERRRR ++ +    LR+L+P      K+ KA I+  AV Y++ LQ
Sbjct: 5   REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQ 56

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 293
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.42
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.42
smart0035353 HLH helix loop helix domain. 99.34
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 99.14
KOG1318411 consensus Helix loop helix transcription factor EB 99.13
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 98.49
KOG4304250 consensus Transcriptional repressors of the hairy/ 98.38
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 98.29
KOG0561 373 consensus bHLH transcription factor [Transcription 98.21
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 98.16
cd0489775 ACT_ACR_3 ACT domain-containing protein which is c 98.14
cd0489675 ACT_ACR-like_3 ACT domain-containing protein which 98.13
cd0489572 ACT_ACR_1 ACT domain-containing protein which is c 98.12
KOG3960284 consensus Myogenic helix-loop-helix transcription 98.1
cd0492776 ACT_ACR-like_2 Second ACT domain, of a novel type 98.01
cd0490073 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, 97.95
cd0492574 ACT_ACR_2 ACT domain-containing protein which is c 97.92
PLN0321793 transcription factor ATBS1; Provisional 97.8
cd0489970 ACT_ACR-UUR-like_2 C-terminal ACT domains of the b 97.46
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 97.45
KOG4029228 consensus Transcription factor HAND2/Transcription 97.42
cd0492868 ACT_TyrKc Uncharacterized, N-terminal ACT domain o 97.35
cd0489377 ACT_GcvR_1 ACT domains that comprise the Glycine C 97.34
cd0492672 ACT_ACR_4 C-terminal ACT domain, of a novel type o 97.3
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 97.05
cd0487288 ACT_1ZPV ACT domain proteins similar to the yet un 96.88
PRK0019490 hypothetical protein; Validated 96.87
cd0487370 ACT_UUR-ACR-like ACT domains of the bacterial sign 96.84
PRK05007884 PII uridylyl-transferase; Provisional 96.78
cd0487574 ACT_F4HF-DF N-terminal ACT domain of formyltetrahy 96.72
cd0487075 ACT_PSP_1 CT domains found N-terminal of phosphose 96.7
cd0488673 ACT_ThrD-II-like C-terminal ACT domain of biodegra 96.54
PF0184266 ACT: ACT domain; InterPro: IPR002912 The ACT domai 96.47
PF1329180 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. 96.46
PRK00275895 glnD PII uridylyl-transferase; Provisional 96.38
PRK04374869 PII uridylyl-transferase; Provisional 96.25
PRK01759854 glnD PII uridylyl-transferase; Provisional 96.01
PRK03059856 PII uridylyl-transferase; Provisional 96.01
PRK03381774 PII uridylyl-transferase; Provisional 95.88
PRK05092931 PII uridylyl-transferase; Provisional 95.86
cd0489469 ACT_ACR-like_1 ACT domain-containing protein which 95.77
PRK03381774 PII uridylyl-transferase; Provisional 95.75
KOG3910632 consensus Helix loop helix transcription factor [T 95.73
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 95.28
cd0488774 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te 95.26
cd0488372 ACT_AcuB C-terminal ACT domain of the Bacillus sub 95.18
cd0488265 ACT_Bt0572_2 C-terminal ACT domain of a novel prot 95.15
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 95.13
COG2844867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 95.02
KOG4447173 consensus Transcription factor TWIST [Transcriptio 94.99
cd0490866 ACT_Bt0572_1 N-terminal ACT domain of a novel prot 94.5
PRK13010 289 purU formyltetrahydrofolate deformylase; Reviewed 94.36
cd0490969 ACT_PDH-BS C-terminal ACT domain of the monofuncti 94.36
PRK05007884 PII uridylyl-transferase; Provisional 94.28
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 94.25
cd0488179 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin 94.22
PRK01759854 glnD PII uridylyl-transferase; Provisional 93.97
PRK04435147 hypothetical protein; Provisional 93.79
PRK06027 286 purU formyltetrahydrofolate deformylase; Reviewed 93.76
PRK05092 931 PII uridylyl-transferase; Provisional 93.73
cd0487774 ACT_TyrR N-terminal ACT domain of the TyrR protein 93.64
PRK00275 895 glnD PII uridylyl-transferase; Provisional 93.4
cd0211660 ACT ACT domains are commonly involved in specifica 93.37
PRK04374869 PII uridylyl-transferase; Provisional 93.0
TIGR00655 280 PurU formyltetrahydrofolate deformylase. This mode 92.93
PRK03059856 PII uridylyl-transferase; Provisional 92.5
cd0488075 ACT_AAAH-PDT-like ACT domain of the nonheme iron-d 92.34
PRK13011 286 formyltetrahydrofolate deformylase; Reviewed 92.12
PRK08577136 hypothetical protein; Provisional 91.85
cd0487671 ACT_RelA-SpoT ACT domain found C-terminal of the R 91.78
PRK07334403 threonine dehydratase; Provisional 91.23
COG383090 ACT domain-containing protein [Signal transduction 91.12
cd0487472 ACT_Af1403 N-terminal ACT domain of the yet unchar 90.33
cd0488472 ACT_CBS C-terminal ACT domain of the cystathionine 90.26
cd0487872 ACT_AHAS N-terminal ACT domain of the Escherichia 89.81
cd0490580 ACT_CM-PDT C-terminal ACT domain of the bifunction 89.77
KOG3560 712 consensus Aryl-hydrocarbon receptor [Transcription 89.7
cd0490371 ACT_LSD C-terminal ACT domain of the L-serine dehy 89.44
cd0488568 ACT_ThrD-I Tandem C-terminal ACT domains of threon 89.4
cd0487971 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te 89.23
cd0488956 ACT_PDH-BS-like C-terminal ACT domain of the monof 89.12
KOG3898254 consensus Transcription factor NeuroD and related 88.73
PRK11589 190 gcvR glycine cleavage system transcriptional repre 88.33
PRK06382406 threonine dehydratase; Provisional 86.54
KOG3558 768 consensus Hypoxia-inducible factor 1/Neuronal PAS 86.38
KOG4395285 consensus Transcription factor Atonal, contains HT 85.96
cd0490474 ACT_AAAH ACT domain of the nonheme iron-dependent, 85.89
cd0490169 ACT_3PGDH C-terminal ACT (regulatory) domain of D- 85.33
KOG3559 598 consensus Transcriptional regulator SIM1 [Transcri 85.22
cd0490685 ACT_ThrD-I_1 First of two tandem C-terminal ACT do 84.93
PRK1115276 ilvM acetolactate synthase 2 regulatory subunit; P 83.64
PF05088 1528 Bac_GDH: Bacterial NAD-glutamate dehydrogenase 83.04
TIGR01127380 ilvA_1Cterm threonine dehydratase, medium form. A 82.96
cd0493190 ACT_PAH ACT domain of the nonheme iron-dependent a 82.65
KOG3582856 consensus Mlx interactors and related transcriptio 82.17
PRK0673776 acetolactate synthase 1 regulatory subunit; Valida 81.81
PRK11589190 gcvR glycine cleavage system transcriptional repre 80.68
COG0788 287 PurU Formyltetrahydrofolate hydrolase [Nucleotide 80.58
PRK08526403 threonine dehydratase; Provisional 80.18
PF1371063 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B. 80.08
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information 
Probab=99.42  E-value=2.5e-13  Score=97.56  Aligned_cols=54  Identities=35%  Similarity=0.564  Sum_probs=50.8

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHhccCCCC---CCCChhcHHHHHHHHHHHHHHHH
Q 042663          102 VDRSRALISERRRRGKMKEKLYALRALVPNI---TKMDKASIVGDAVLYVQDLQMKA  155 (293)
Q Consensus       102 ~~r~~h~~~ER~RR~~in~~~~~LrslvP~~---~K~dKasIL~~Ai~yI~~Lq~~~  155 (293)
                      ..+..|+..||+||++||..|..|+++||..   .|++|++||..||+||+.|+.++
T Consensus         3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~   59 (60)
T cd00083           3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL   59 (60)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            4678899999999999999999999999987   89999999999999999999875

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains Back     alignment and domain information
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein Back     alignment and domain information
>PRK00194 hypothetical protein; Validated Back     alignment and domain information
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains Back     alignment and domain information
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold Back     alignment and domain information
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG3910 consensus Helix loop helix transcription factor [Transcription] Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains Back     alignment and domain information
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB Back     alignment and domain information
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4447 consensus Transcription factor TWIST [Transcription] Back     alignment and domain information
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains Back     alignment and domain information
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK04435 hypothetical protein; Provisional Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR00655 PurU formyltetrahydrofolate deformylase Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>PRK13011 formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK08577 hypothetical protein; Provisional Back     alignment and domain information
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>COG3830 ACT domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a Back     alignment and domain information
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria Back     alignment and domain information
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) Back     alignment and domain information
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme Back     alignment and domain information
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] Back     alignment and domain information
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit Back     alignment and domain information
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) Back     alignment and domain information
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate Back     alignment and domain information
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription] Back     alignment and domain information
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional Back     alignment and domain information
>PRK06382 threonine dehydratase; Provisional Back     alignment and domain information
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] Back     alignment and domain information
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription] Back     alignment and domain information
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria Back     alignment and domain information
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription] Back     alignment and domain information
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) Back     alignment and domain information
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional Back     alignment and domain information
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase Back     alignment and domain information
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form Back     alignment and domain information
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH) Back     alignment and domain information
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription] Back     alignment and domain information
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated Back     alignment and domain information
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional Back     alignment and domain information
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK08526 threonine dehydratase; Provisional Back     alignment and domain information
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query293
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 3e-15
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 2e-12
1hlo_A80 Protein (transcription factor MAX); transcriptiona 1e-11
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 1e-11
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 7e-09
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 6e-08
4f3l_A 361 Mclock, circadian locomoter output cycles protein 1e-04
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 4e-04
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
 Score = 68.6 bits (168), Expect = 3e-15
 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 98  KKPKVDRSRALISERRRRGKMKEKLYALRALVPNI-TKMDKASIVGDAVLYVQDLQMKAK 156
           +     R+     E+R R  + +K+  L+ LV     K++K++++  A+ Y++ LQ   +
Sbjct: 1   QSRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQ 60

Query: 157 KLKTEIADLEASLTGAER 174
           KLK E   L  ++  ++ 
Sbjct: 61  KLKQENLSLRTAVHKSKS 78
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361 Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query293
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.72
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.62
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.61
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.59
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.58
4ati_A118 MITF, microphthalmia-associated transcription fact 99.58
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.56
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.56
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.53
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.47
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.42
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 99.23
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 99.22
4f3l_A 361 Mclock, circadian locomoter output cycles protein 98.99
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.83
4ath_A83 MITF, microphthalmia-associated transcription fact 98.74
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.68
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 98.04
1zpv_A91 ACT domain protein; structural genomics, PSI, prot 97.34
1u8s_A 192 Glycine cleavage system transcriptional repressor, 96.82
2nyi_A 195 Unknown protein; protein structure initiative, PSI 96.46
2nyi_A195 Unknown protein; protein structure initiative, PSI 96.36
2ko1_A88 CTR148A, GTP pyrophosphokinase; homodimer, alpha+b 95.56
1u8s_A192 Glycine cleavage system transcriptional repressor, 95.54
3p96_A 415 Phosphoserine phosphatase SERB; ssgcid, structural 94.2
3n0v_A 286 Formyltetrahydrofolate deformylase; formyl transfe 93.91
3lou_A 292 Formyltetrahydrofolate deformylase; structural gen 93.9
3o1l_A 302 Formyltetrahydrofolate deformylase; structural gen 93.82
3obi_A 288 Formyltetrahydrofolate deformylase; structural gen 93.28
3nrb_A 287 Formyltetrahydrofolate deformylase; N-terminal ACT 90.76
2f1f_A164 Acetolactate synthase isozyme III small subunit; f 85.49
2jhe_A 190 Transcription regulator TYRR; aromatic hydrocarbon 85.27
2fgc_A193 Acetolactate synthase, small subunit; regulatory s 83.99
2pc6_A165 Probable acetolactate synthase isozyme III (small; 82.84
2f06_A144 Conserved hypothetical protein; structural genomic 82.56
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 80.38
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
Probab=99.72  E-value=7.9e-18  Score=128.92  Aligned_cols=70  Identities=27%  Similarity=0.415  Sum_probs=65.4

Q ss_pred             CcccchhhHHHHHHHHHHHHHHHHHhccCCCC-CCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042663          101 KVDRSRALISERRRRGKMKEKLYALRALVPNI-TKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEASLT  170 (293)
Q Consensus       101 ~~~r~~h~~~ER~RR~~in~~~~~LrslvP~~-~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~~~~~  170 (293)
                      ..+|..|+.+||+||++||++|.+|+++||++ .|++|++||.+||+||++||.+++.|+++++.|+....
T Consensus         4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~   74 (82)
T 1am9_A            4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVH   74 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999986 89999999999999999999999999999999987653
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Back     alignment and structure
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} Back     alignment and structure
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 293
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 1e-13
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 1e-13
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 1e-12
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 1e-12
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 5e-12
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 2e-10
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 1e-09
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 5e-09
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (152), Expect = 1e-13
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 115 RGKMKEKLYALRALVPNIT-KMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEASL 169
           R  + +K+  L+ LV     KM K+ ++  A+ Y++ LQ    KL+ E   L+ + 
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLAN 56
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query293
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.64
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.59
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.56
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.56
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.54
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.51
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.46
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.46
d1zpva183 UPF0237 protein SP0238 {Streptococcus pneumoniae [ 97.49
d1u8sa186 putative transcriptional repressor VC2159 {Vibrio 96.91
d1u8sa293 putative transcriptional repressor VC2159 {Vibrio 96.39
d2f06a171 Hypothetical protein BT0572 {Bacteroides thetaiota 95.42
d1y7pa277 Hypothetical protein AF1403, N-terminal domain {Ar 94.61
d2f06a270 Hypothetical protein BT0572 {Bacteroides thetaiota 94.21
d2fgca278 Acetolactate synthase small subunit, IlvH {Thermot 87.85
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.3e-16  Score=119.60  Aligned_cols=68  Identities=28%  Similarity=0.424  Sum_probs=63.2

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHhccCCC-CCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042663          102 VDRSRALISERRRRGKMKEKLYALRALVPN-ITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEASL  169 (293)
Q Consensus       102 ~~r~~h~~~ER~RR~~in~~~~~LrslvP~-~~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~~~~  169 (293)
                      .+|..|+.+||+||++||+.|..|++|||+ ..|++|++||..||+||+.|+.+++.|++++..|+...
T Consensus         5 ~kR~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~~~   73 (80)
T d1am9a_           5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV   73 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568899999999999999999999999998 46999999999999999999999999999999887644
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure