Citrus Sinensis ID: 042844

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370--
Protein Sequence
MRLLKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGES
Secondary Structure (PSIPRED)
cccccccccEEEEEEcccEEEEEEcccEEEEEEcccccccccccccccccccccccEEEcccccccEEEEcccccEEEEEccccEEEEEcccccccccccccccccccccEEEcccccccEEEEEcccccEEEEcccccEEEEEcccccccccccccccEEEcEEEcccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccccccEEccccccEEEEcccEEEEEEEcccEEEEEccccccccccccEEEEccccEEEEEccccEEEEEEccccEEEEEccccccccccccccEEEcEEEccccEEEEcccccEEEEEEccccccccccccEEEEEcccccccccccccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccHccEEEEEEEccccEEEEEEcccEEEEEEccccccccccccccccccccccccHHHHHcccEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccccEHHHccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEEEcccccEEEEEEEcEEEcccccEEEEcccccccccccEEHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEEEEEEEEEEEcccEEEEEEccccccccccccEEEEEccccccccccccccccccHHHHHcccc
Coil and Loop (DISEMBL)
MRLLKSVVHNHVNVLTSRIfmrsasgtavvsfgdgsqgalglptsltgvggdayeptrvpglpsdvtsvsaghYHSLAvtnngavwawgrnnevqlgrgalesratwndpkrvegldQVNVCAAFASGVVssaigddgslwvwgkskrgqlglgkditeaIVPSRVEALAGEKIVKVSFgwghalaqtedgklfgwgysadgrignlgkalesspldsnidrssesdqeiSSSTIEKAQKLVSEGmekekympiiwepflvegvevvdiacgfdhslvlgrngvllscgsnvygqlgrekqdmgmfpvdinfhpvsissglGHSLAICEvrssnvtggarGIVSwgwnrssqlgrmgpdnvplvvegleges
Flexible Loop (DISEMBL)
MRLLKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRssesdqeissstiEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSsnvtggargIVSWGWnrssqlgrmgpdnvplvvegleges
Low Complexity Region (SEG)
MRLLKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNidrssesdqeissstieKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGES
Disordered region (IsUnstruct)
*****SVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL******************************************KYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRS**********************
Disordered Region (DISOPRED)
MRL***VVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLE***
Disordered Region (DISEMBL)
MRLLKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALES*********************IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGES
Disordered Region (DISPRO)
MRLLKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLP*****VGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLE***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRLLKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGES
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	372	2.2.26 [Sep-21-2011]
Q9FN03	440	Ultraviolet-B receptor UV	no	no	0.774	0.654	0.277	8e-23
Q6P798	551	RCC1 and BTB domain-conta	yes	no	0.392	0.264	0.397	2e-22
Q99LJ7	551	RCC1 and BTB domain-conta	yes	no	0.392	0.264	0.397	5e-22
Q5RCZ7	551	RCC1 and BTB domain-conta	yes	no	0.459	0.310	0.346	5e-22
O95199	551	RCC1 and BTB domain-conta	yes	no	0.459	0.310	0.346	5e-22
Q8IVU3	1022	Probable E3 ubiquitin-pro	no	no	0.604	0.220	0.314	3e-21
Q80YD6	464	Secretion-regulating guan	no	no	0.733	0.588	0.291	6e-21
Q9VR91	4912	Probable E3 ubiquitin-pro	no	no	0.733	0.055	0.297	6e-20
Q6NYE2	495	Protein RCC2 homolog OS=D	no	no	0.709	0.533	0.275	2e-19
F2Z461	1003	E3 ISG15--protein ligase	no	no	0.610	0.226	0.288	7e-19

>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1

 Score =  108 bits (269), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 155/353 (43%), Gaps = 65/353 (18%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           S SG  V S+G G  G LG      G   D + P  +  L    +  ++ G  H LAVT 
Sbjct: 83  SQSGMEVYSWGWGDFGRLG-----HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 137

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            G V +WGRN   QLG G  E       P++++  + + +    A    ++A+ +DG L+
Sbjct: 138 EGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLY 194

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G LGLG D T+ +VP RV +  GEK+  V+ GW H ++ +  G L+ +G+S  
Sbjct: 195 GWGWGRYGNLGLG-DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 253

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G+    LE   +   +       + +S+S I +                        
Sbjct: 254 GQLGH--GDLEDHLIPHKL-------EALSNSFISQ------------------------ 280

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSI 317
                  I+ G+ H++ L  +G L   G N +GQ+G         PV + F      V +
Sbjct: 281 -------ISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV 333

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           S G  H+LA+ E  +         + +WG   + QL  G     N P ++E L
Sbjct: 334 SCGWRHTLAVTERNN---------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 377

UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6P798|RCBT2_RAT RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 90/151 (59%), Gaps = 5/151 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V  + 
Sbjct: 154 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKVVMSI 210

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 211 ACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQP-TPCRVAALQGIRVQRVACGYAHT 269

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           L  T++G+++ WG ++ G++G   K+ +S P
Sbjct: 270 LVLTDEGQIYAWGANSYGQLGTGNKSNQSYP 300

Rattus norvegicus (taxid: 10116)

>sp|Q99LJ7|RCBT2_MOUSE RCC1 and BTB domain-containing protein 2 OS=Mus musculus GN=Rcbtb2 PE=2 SV=1

 Score =  105 bits (263), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 89/151 (58%), Gaps = 5/151 (3%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V    
Sbjct: 154 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKVVMNI 210

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G + S A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 211 ACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQP-TPCRVAALQGIRVQRVACGYAHT 269

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSP 215
           L  T++G+++ WG ++ G++G   K+ +S P
Sbjct: 270 LVLTDEGQIYAWGANSYGQLGTGNKSNQSYP 300

Mus musculus (taxid: 10090)

>sp|Q5RCZ7|RCBT2_PONAB RCC1 and BTB domain-containing protein 2 OS=Pongo abelii GN=RCBTB2 PE=2 SV=1

 Score =  105 bits (262), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V    
Sbjct: 154 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPI---PRRVTGCLQNKVVVTI 210

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 211 ACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP-TPCRVAALQGIRVQRVACGYAHT 269

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 270 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAK 325

Pongo abelii (taxid: 9601)

>sp|O95199|RCBT2_HUMAN RCC1 and BTB domain-containing protein 2 OS=Homo sapiens GN=RCBTB2 PE=2 SV=1

 Score =  105 bits (262), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G YHSL +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V    
Sbjct: 154 VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPI---PRRVTGCLQNKVVVTI 210

Query: 126 ASG-VVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
           A G +   A+ D G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H 
Sbjct: 211 ACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQP-TPCRVAALQGIRVQRVACGYAHT 269

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           L  T++G+++ WG ++ G++G   K+ +S P    +++    +     ST   A K
Sbjct: 270 LVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVTVEKDRIIEIAACHSTHTSAAK 325

Homo sapiens (taxid: 9606)

>sp|Q8IVU3|HERC6_HUMAN Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 128/270 (47%), Gaps = 45/270 (16%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTR-VPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V+S GD S+G LG         G+  EP + +  L  D+  VS G  HSLAV + G V+A
Sbjct: 44  VLSCGDNSRGQLG---RRGAQRGELPEPIQALETLIVDL--VSCGKEHSLAVCHKGRVFA 98

Query: 88  WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSK 147
           WG  +E QLG G  E +     PK++  L+ + +         S A+  D  ++ WGK+ 
Sbjct: 99  WGAGSEGQLGIG--EFKEISFTPKKIMTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNS 156

Query: 148 RGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNL 207
            GQLGLGK+      P RV +L G  + +V+ G  H+ A +  G  FGWG ++ G++   
Sbjct: 157 HGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALS 216

Query: 208 GKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVV 267
           G+ +   P+ SN                    K +S G               ++ + VV
Sbjct: 217 GRNV---PVQSN--------------------KPLSVGA--------------LKNLGVV 239

Query: 268 DIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            I+CG  H+ VL ++G + + G N  GQLG
Sbjct: 240 YISCGDAHTAVLTQDGKVFTFGDNRSGQLG 269

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q80YD6|SRGEF_MOUSE Secretion-regulating guanine nucleotide exchange factor OS=Mus musculus GN=Sergef PE=2 SV=2

 Score =  102 bits (253), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 144/322 (44%), Gaps = 49/322 (15%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+S G  + G LG+P            P  +  L   V  V+AG  H+LA T  G+V+ W
Sbjct: 122 VLSCGSNAFGQLGVPHGPR----KCVVPQAIECLREKVVCVAAGLRHALATTATGSVFQW 177

Query: 89  GR---NNEVQLGRGA-LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG 144
           G    ++  +L  G  L    T  +P RV GL+      A A    S+++ D G L+VWG
Sbjct: 178 GTGLASSGRRLCPGQNLPLFLTAKEPSRVTGLENSTAVCAVAGSDHSASLTDTGELYVWG 237

Query: 145 KSKRGQLGLGKDITEAI---VPSRVEA--LAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           ++K GQL      + A+   +P R+EA     EK+  V  GW H +A+TE GK+F WG +
Sbjct: 238 RNKHGQLA-----SRAVFLPLPQRIEAHYFQDEKVTAVWSGWTHLVAKTETGKVFTWGRA 292

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
                G LG+ LE                  +   +E+   L  +G +     P+     
Sbjct: 293 ---DYGQLGRRLEPPE---------------AQKPVEQDSSLAFQGPQNSVPSPL----H 330

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVS--- 316
            + G    +I+CG +H+L + R+    S G N +G  G   +     P  +   P S   
Sbjct: 331 CLTG--ATEISCGSEHNLAVIRDKC-CSWGWNEHGMCGDGTESNVWTPTPVQALPPSPSR 387

Query: 317 ---ISSGLGHSLAICEVRSSNV 335
              +  G GHSLA+C++ +  V
Sbjct: 388 LLLVGCGAGHSLAVCQLPAHPV 409

Probable guanine nucleotide exchange factor (GEF), which may be involved in the secretion process.

Mus musculus (taxid: 10090)

>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3

 Score = 99.0 bits (245), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 151/349 (43%), Gaps = 76/349 (21%)

Query: 19   IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT---SVSAGHYH 75
            +F+ S  G  V + G+G+ G LGL     GV  +   P ++P L   V    +V +G  H
Sbjct: 3031 LFIVSQDGK-VYACGEGTNGRLGL-----GVTHNVPLPHQLPVLRQYVVKKVAVHSGGKH 3084

Query: 76   SLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG 135
            +LA+T +G V++WG   + +LG G   +R T + P+ VE L    +         S+AI 
Sbjct: 3085 ALALTLDGKVFSWGEGEDGKLGHG---NRTTLDKPRLVEALRAKKIRDVACGSSHSAAIS 3141

Query: 136  DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKL 193
              G L+ WG  + G+LG G + T+ + P  V ALAG ++V+V+ G      LA TEDG +
Sbjct: 3142 SQGELYTWGLGEYGRLGHGDNTTQ-LKPKLVTALAGRRVVQVACGSRDAQTLALTEDGAV 3200

Query: 194  FGWGYSADGRIGNLGKA-LESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYM 252
            F WG   DG  G LG+   E S     I+R S                            
Sbjct: 3201 FSWG---DGDFGKLGRGGSEGSDTPHEIERLS---------------------------- 3229

Query: 253  PIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG-------REKQDMGM 305
                      G+ VV I CG   SL L R G + + G   Y +LG       R+ Q +G 
Sbjct: 3230 ----------GIGVVQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRKPQPIGG 3279

Query: 306  FPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
                   H   ++ G  H LA+ +         A  + +WG N   Q G
Sbjct: 3280 LRGRRVIH---VAVGALHCLAVTD---------AGQVYAWGDNDHGQQG 3316

Probable E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6NYE2|RCC2_DANRE Protein RCC2 homolog OS=Danio rerio GN=rcc2 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 131/287 (45%), Gaps = 23/287 (8%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAI 134
           HSL +T  G +W+WGRN++ QLG G  +       PK +EGL +  + AA      + A+
Sbjct: 134 HSLIITTEGKLWSWGRNDKGQLGHGDTKRLEA---PKLIEGLGEEVIVAAACGRNHTLAL 190

Query: 135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLF 194
            ++G+++ +G++K GQLG G      + P+ ++   G+ IVKV+ G   ++     G L+
Sbjct: 191 TENGTVYTFGENKLGQLGQGNQTDAVLSPATIQ-YNGQPIVKVACGAEFSMIVDCKGNLY 249

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
            +G    G++G+            N D    +  +      E   + V+  +EK K   +
Sbjct: 250 SFGCPEYGQLGH------------NSDGKFIARAQRIEFDCELIPRRVAIFIEKTKDGQV 297

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           +  P +V      D+ACG +H+LVL     + S G   YG+LG  +Q   M P  +    
Sbjct: 298 LPVPNVV----ARDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD 353

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
                G G +   C  + S       G+  WG   +S+   M P  V
Sbjct: 354 F---PGRGATQIYCGYQCSFALSEMGGLFFWGVTNTSRESTMYPKAV 397

Required for completion of mitosis and cytokinesis.

Danio rerio (taxid: 7955)

>sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 23/250 (9%)

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
           ++   ++G +HSL + +N  V++ G N+  QLG+   +S      P+ ++ L+ ++V   
Sbjct: 23  ELLQAASGEHHSLLLFSNHRVYSCGDNSWGQLGQRRDQST---ERPEPIQALNDLHVDLV 79

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
                 S A+   G ++ WG    GQLG+G+    + +P++++ALAG KI++VS G  H+
Sbjct: 80  SCGKEHSVAVCHKGKVFAWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQVSCGHYHS 139

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSES---DQEISSSTIEKAQKL 241
           LA +EDG +F WG +++G++G LGK   S  +   + +S E     Q  +  T   A  L
Sbjct: 140 LALSEDGHVFSWGRNSEGQLG-LGKNSRSQAIPQKV-KSLEGIPLAQVAAGGTHSFALSL 197

Query: 242 V------------SEGMEKEKYMPIIWEPFLV---EGVEVVDIACGFDHSLVLGRNGVLL 286
                           +   K    I++P  +   + + V+ I+CG++H+ VL   G + 
Sbjct: 198 TGTSFGWGSNRSGQLALSGNKVKEQIYKPHSIGALKNLSVIYISCGYEHTAVLTEEGQVF 257

Query: 287 SCGSNVYGQL 296
           + G N  GQL
Sbjct: 258 TFGGNSSGQL 267

Major E3 ligase for ISG15 conjugation. Acts as a positive regulator of innate antiviral response in cells induced by interferon.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
224129274	413	predicted protein [Populus trichocarpa]	0.916	0.825	0.722	1e-137
449457540	452	PREDICTED: probable E3 ubiquitin-protein	0.935	0.769	0.672	1e-137
225447438	432	PREDICTED: probable E3 ubiquitin-protein	0.932	0.803	0.706	1e-136
296085080	426	unnamed protein product [Vitis vinifera]	0.932	0.814	0.706	1e-136
255567172	441	cell cycle regulatory protein, putative	0.981	0.827	0.639	1e-132
388498790	433	unknown [Lotus japonicus]	0.905	0.778	0.650	1e-128
357483503	442	RCC1 and BTB domain-containing protein [	0.927	0.780	0.643	1e-126
356495400	432	PREDICTED: probable E3 ubiquitin-protein	0.946	0.814	0.605	1e-122
145334779	454	regulator of chromosome condensation rep	0.973	0.797	0.608	1e-117
297792001	454	regulator of chromosome condensation fam	0.903	0.740	0.647	1e-116

>gi|224129274|ref|XP_002320544.1| predicted protein [Populus trichocarpa] gi|222861317|gb|EEE98859.1| predicted protein [Populus trichocarpa]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 250/346 (72%), Positives = 286/346 (82%), Gaps = 5/346 (1%)

Query: 30  VSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWG 89
           +SFGDGS GALGLPTSL G G DAYEPT V GLPSD+TSVSAGHYHSLAVT++G +WAWG
Sbjct: 1   MSFGDGSHGALGLPTSLIGHGMDAYEPTPVTGLPSDITSVSAGHYHSLAVTSHGQLWAWG 60

Query: 90  RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRG 149
           RN+EVQLGRG L  R TWN+PKRVEGLDQV V AAFASGVVS+AIGDDGSLWVWGKSKRG
Sbjct: 61  RNHEVQLGRGLLSPRDTWNEPKRVEGLDQVQVTAAFASGVVSAAIGDDGSLWVWGKSKRG 120

Query: 150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
           QLGLGK ITEA VPS+VEAL G+KI KVSFGWGH LAQT +GKLFGWGY ADGR+G +G 
Sbjct: 121 QLGLGKGITEASVPSKVEALEGQKIAKVSFGWGHTLAQTVEGKLFGWGYLADGRLGKMGG 180

Query: 210 ALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE---GVEV 266
            +E+SPLDS+++      + I+ ST+E A++LV EGMEKEK MPI+W+P  VE   GVEV
Sbjct: 181 LVEASPLDSSMNVVKH--EVITQSTVEVAERLVLEGMEKEKDMPIVWDPCSVEELKGVEV 238

Query: 267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLA 326
           VDIACG DHSLVL R+G LLS GSNVYGQLGR   DMG FPVDI+F  ++I+SGLGHSLA
Sbjct: 239 VDIACGLDHSLVLCRDGTLLSSGSNVYGQLGRANHDMGFFPVDISFPALAIASGLGHSLA 298

Query: 327 ICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGES 372
           IC+ +S    G A  IVSWGWN+SSQLGR GP+NVP+ VEGL GE+
Sbjct: 299 ICQAKSPEGKGDATSIVSWGWNQSSQLGRPGPENVPMEVEGLAGET 344

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457540|ref|XP_004146506.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] gi|449499975|ref|XP_004160968.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 238/354 (67%), Positives = 291/354 (82%), Gaps = 6/354 (1%)

Query: 22  RSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTN 81
           R  S  AV+SFGDGS GA+GLPTSLTG+GG AYEPT VPGLPS VT+V+AGHYHSLA+ +
Sbjct: 33  RCISSRAVMSFGDGSHGAIGLPTSLTGIGGSAYEPTTVPGLPSHVTTVAAGHYHSLALDS 92

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            G +WAWGR++E QLGRG    R +WN PKRV GLDQVN+C+AFASGVVS+A+GDDGSLW
Sbjct: 93  QGCLWAWGRDHEAQLGRGFASPRDSWNVPKRVIGLDQVNICSAFASGVVSAALGDDGSLW 152

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
           +WGKSKRGQLGLG+D+TEA++PSRV+AL GEKIVKVSFGWGHALA +EDGKLFGWGY AD
Sbjct: 153 IWGKSKRGQLGLGEDVTEAVIPSRVQALEGEKIVKVSFGWGHALAFSEDGKLFGWGYYAD 212

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           GR+GN+G+ ++ SPLDS+  RS+   ++     IE A++LV E ME+EK MPIIWEP LV
Sbjct: 213 GRLGNVGRTMKMSPLDSSSYRSTTGQEQ---PNIELAERLVLESMEEEKNMPIIWEPHLV 269

Query: 262 E---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSIS 318
           E    VEVVDIACG DHSLVL R+G LLSCGSN+YGQLGR  QD+G+ PVD +FH  SI+
Sbjct: 270 EDETAVEVVDIACGLDHSLVLCRDGTLLSCGSNIYGQLGRVTQDLGLLPVDSSFHVKSIA 329

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGES 372
           +GLGHSLA+C+  S+     A  ++SWGWN++SQLGR+GP+N+PL +EGL GE+
Sbjct: 330 AGLGHSLALCQDTSNKDIRDATSVISWGWNQTSQLGRVGPNNIPLAIEGLAGET 383

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447438|ref|XP_002266143.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Vitis vinifera]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 253/358 (70%), Positives = 286/358 (79%), Gaps = 11/358 (3%)

Query: 18  RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSL 77
           R F  S+S  +V+SFGDGS GALGLP+SL G+GGDAYEPT VPGLPSDV SVSAGHYHSL
Sbjct: 14  RCF--SSSARSVMSFGDGSHGALGLPSSLIGLGGDAYEPTPVPGLPSDVCSVSAGHYHSL 71

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
           AVT  G VWAWGRN+E QLGRG L  R +WN P RVEGL+QV V AAFASGV+S+AIGDD
Sbjct: 72  AVTAQGEVWAWGRNHEGQLGRGLLAPRDSWNVPTRVEGLNQVKVRAAFASGVISTAIGDD 131

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           GSLWVWGKSK GQLGLGK I+E +VPSRVEALA EKIVKVS GWGHALAQTEDGKLFGWG
Sbjct: 132 GSLWVWGKSKHGQLGLGKGISETVVPSRVEALAREKIVKVSLGWGHALAQTEDGKLFGWG 191

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           YSADGR+G +GKALE  PL+S  DR      E+SSS +E A+ +V +G+EKEK MPIIWE
Sbjct: 192 YSADGRLGQVGKALEVFPLNSVADR------ELSSSKLEVAENMVLKGIEKEKNMPIIWE 245

Query: 258 PFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           P L+E   GV +VD+ACG DHSLVL  NG LLS GSN+YGQLGR  QD GM PV  +F P
Sbjct: 246 PSLIEEENGVGIVDVACGLDHSLVLCVNGNLLSGGSNIYGQLGRVAQDYGMVPVTTSFIP 305

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGES 372
           +SISSGLGHSLAIC+V SS   GGA  I+SWGWN+  QLGR GP + PL V+GL GE+
Sbjct: 306 ISISSGLGHSLAICQVESSEAIGGATSIISWGWNQFFQLGRAGPGSCPLAVKGLAGET 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085080|emb|CBI28495.3| unnamed protein product [Vitis vinifera]

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 253/358 (70%), Positives = 286/358 (79%), Gaps = 11/358 (3%)

Query: 18  RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSL 77
           R F  S+S  +V+SFGDGS GALGLP+SL G+GGDAYEPT VPGLPSDV SVSAGHYHSL
Sbjct: 8   RCF--SSSARSVMSFGDGSHGALGLPSSLIGLGGDAYEPTPVPGLPSDVCSVSAGHYHSL 65

Query: 78  AVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDD 137
           AVT  G VWAWGRN+E QLGRG L  R +WN P RVEGL+QV V AAFASGV+S+AIGDD
Sbjct: 66  AVTAQGEVWAWGRNHEGQLGRGLLAPRDSWNVPTRVEGLNQVKVRAAFASGVISTAIGDD 125

Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
           GSLWVWGKSK GQLGLGK I+E +VPSRVEALA EKIVKVS GWGHALAQTEDGKLFGWG
Sbjct: 126 GSLWVWGKSKHGQLGLGKGISETVVPSRVEALAREKIVKVSLGWGHALAQTEDGKLFGWG 185

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
           YSADGR+G +GKALE  PL+S  DR      E+SSS +E A+ +V +G+EKEK MPIIWE
Sbjct: 186 YSADGRLGQVGKALEVFPLNSVADR------ELSSSKLEVAENMVLKGIEKEKNMPIIWE 239

Query: 258 PFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP 314
           P L+E   GV +VD+ACG DHSLVL  NG LLS GSN+YGQLGR  QD GM PV  +F P
Sbjct: 240 PSLIEEENGVGIVDVACGLDHSLVLCVNGNLLSGGSNIYGQLGRVAQDYGMVPVTTSFIP 299

Query: 315 VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGES 372
           +SISSGLGHSLAIC+V SS   GGA  I+SWGWN+  QLGR GP + PL V+GL GE+
Sbjct: 300 ISISSGLGHSLAICQVESSEAIGGATSIISWGWNQFFQLGRAGPGSCPLAVKGLAGET 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567172|ref|XP_002524567.1| cell cycle regulatory protein, putative [Ricinus communis] gi|223536120|gb|EEF37775.1| cell cycle regulatory protein, putative [Ricinus communis]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/374 (63%), Positives = 288/374 (77%), Gaps = 9/374 (2%)

Query: 1   MRLLKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVP 60
           +R L     N +N     I   +   T V+SFGDGS GALGLP SLTG+G DAYEPT V 
Sbjct: 4   IRALLRKEQNLLNATRRCISSFNHRDTIVMSFGDGSHGALGLPNSLTGLGTDAYEPTIVS 63

Query: 61  GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
           GLPSD+  V+AGHYHSLAVT+ G +WAWGRNNE QLGR     R TWN+PKRVEGL++V+
Sbjct: 64  GLPSDIVGVTAGHYHSLAVTSTGQLWAWGRNNEAQLGRCIPAPRDTWNEPKRVEGLNKVH 123

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
           + +A+ASGVVS+AI +DGSLWVWGKSKRGQLGLGK ITEA VPS++EALAG KI KVSFG
Sbjct: 124 ILSAYASGVVSAAIANDGSLWVWGKSKRGQLGLGKGITEAFVPSKIEALAGTKIAKVSFG 183

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           WGHALA +E+GKLFGWGYSADGR+G +  ALE S LDSN      ++Q++    +E +++
Sbjct: 184 WGHALALSEEGKLFGWGYSADGRLGKIMGALEVSALDSN------ANQQVPKLMLEASER 237

Query: 241 LVSEGMEKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
           LV EGMEKE  MPI+W+P LVE   G +VVDIACG DHSLVL  +G LLS GSN+YGQLG
Sbjct: 238 LVLEGMEKENDMPILWDPCLVEELHGTKVVDIACGLDHSLVLCCDGTLLSSGSNIYGQLG 297

Query: 298 REKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
           R   ++G+FPVD+N HP SI++GLGHSLAIC   SS+  G AR IVSWGWN+SSQLGR+G
Sbjct: 298 RANHEIGLFPVDLNIHPSSIAAGLGHSLAICRAASSDAEGDARNIVSWGWNQSSQLGRLG 357

Query: 358 PDNVPLVVEGLEGE 371
           P+ +PL +EGL GE
Sbjct: 358 PEGIPLEIEGLAGE 371

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498790|gb|AFK37461.1| unknown [Lotus japonicus]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/349 (65%), Positives = 273/349 (78%), Gaps = 12/349 (3%)

Query: 27  TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVW 86
           + V+SFGDG+ GALGLP+S  GVG DAYEPT +P LPSD+ SV AGHYHSLAVT+ G +W
Sbjct: 25  STVMSFGDGTHGALGLPSSAVGVGLDAYEPTPIPSLPSDIVSVHAGHYHSLAVTSQGHLW 84

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWGRNNE QLG G   SR +WN+PK V GL+ V VCAA+ASGVVS+A+GDDGS+WVWGKS
Sbjct: 85  AWGRNNEAQLGPGFSSSRESWNEPKMVVGLENVKVCAAYASGVVSAAVGDDGSVWVWGKS 144

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           KRGQLGLGK +TEA+ P+++EAL+GE + KVSFGWGHALAQT DGKLFGWGY ADGRIG 
Sbjct: 145 KRGQLGLGKGVTEAVAPAKLEALSGENVAKVSFGWGHALAQTVDGKLFGWGYLADGRIGK 204

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE---G 263
           +G  LE SPLDS     S+         +E A K V +GMEKE  MP +WEP LVE   G
Sbjct: 205 MGNQLEESPLDSAAGTVSD---------LEVAGKRVLQGMEKENDMPTVWEPRLVEELRG 255

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGH 323
           V V+DIACG DHSL+L RNG LLSCGS+ YGQLGR + D+G+FPVDI+F PVSI++GLGH
Sbjct: 256 VHVIDIACGLDHSLILCRNGALLSCGSDAYGQLGRARPDLGIFPVDISFKPVSIAAGLGH 315

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGES 372
           SLAICE+  S+ + G   I SWGWN+SSQLGR GP N+P +++ L+GE+
Sbjct: 316 SLAICELDESDSSVGTTNIASWGWNQSSQLGRTGPGNLPSLIDALDGEN 364

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483503|ref|XP_003612038.1| RCC1 and BTB domain-containing protein [Medicago truncatula] gi|355513373|gb|AES94996.1| RCC1 and BTB domain-containing protein [Medicago truncatula]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/351 (64%), Positives = 274/351 (78%), Gaps = 6/351 (1%)

Query: 27  TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVW 86
           + V+SFGDG+ GALGLPT+  G+G  AYEPT +P LPSD+ +V AGHYHSLA T+ G +W
Sbjct: 24  STVMSFGDGTHGALGLPTTTVGIGTHAYEPTPIPSLPSDILTVHAGHYHSLATTSQGHLW 83

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           AWGRNNE QLGRG L SR TWN+P+RVEGL+ VNVC AFASGVVS  +GDDGS+WVWG S
Sbjct: 84  AWGRNNEAQLGRG-LSSRETWNEPRRVEGLEHVNVCGAFASGVVSCCVGDDGSVWVWGMS 142

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           KRGQLGLGK +TEA+VPSRVEAL+ + +VKVSFGWGHALA T DGKLFGWGY ADGRIGN
Sbjct: 143 KRGQLGLGKHVTEAVVPSRVEALSRQNVVKVSFGWGHALALTVDGKLFGWGYYADGRIGN 202

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE---G 263
           +G     S    +   +  ++ +I+SS +E A+K V +GM +E  MPIIWEP LVE   G
Sbjct: 203 MGNDHLESSTLDSSSSAFSNNTQITSSDLEVAEKKVLQGMAEETNMPIIWEPRLVEELRG 262

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGH 323
           ++VVDIACG DHSLVL R+G LLS GSNVYGQLGR ++D+G FPVDI F PVS+++GLGH
Sbjct: 263 IQVVDIACGLDHSLVLCRDGALLSSGSNVYGQLGRAREDLGFFPVDIKFTPVSVAAGLGH 322

Query: 324 SLAICEV--RSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGES 372
           SLAIC++    SNVT G   I SWGWN+SSQLGR GP  +P +++ L GE+
Sbjct: 323 SLAICQLDESDSNVTLGTTDIASWGWNQSSQLGRAGPAYLPALIDALAGEN 373

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495400|ref|XP_003516566.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/370 (60%), Positives = 289/370 (78%), Gaps = 18/370 (4%)

Query: 14  VLTSRIFMRSASG------TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVT 67
           +L  ++ +++ SG      + V+ FGDGSQGA+G P    GVG DAYEPT V  LPSD+ 
Sbjct: 1   MLVRKLKLKAVSGVHLRWMSTVMCFGDGSQGAVGSPV---GVGLDAYEPTPVTALPSDIV 57

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL-DQVNVCAAFA 126
           SV AGHYHSLA+T++G +WAWGRNNE QLGRG   SR +W++P+RV+GL + VNVC AFA
Sbjct: 58  SVHAGHYHSLALTSHGHLWAWGRNNEAQLGRGPSSSRESWHEPERVKGLLENVNVCGAFA 117

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
           SGVVS+A+GDDGS+WVWGKSKRGQLGLG+ ITEA+VP+++EAL+ E + KV+FGWGHALA
Sbjct: 118 SGVVSAALGDDGSVWVWGKSKRGQLGLGQHITEAVVPTKLEALSRENVAKVAFGWGHALA 177

Query: 187 QTEDGKLFGWGYSADGRIGNLG-KALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
           +T DGKLFGWGYSADGRIG +G    ++SPL+S     S ++ ++S+S +E A+K V +G
Sbjct: 178 RTSDGKLFGWGYSADGRIGKMGNNHFQTSPLESE----SPNNSQLSTSDLEAAEKRVLQG 233

Query: 246 MEKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
           +E+E  MPI+WEP LVE   GV V+DIACG DHSLVL R+GVLLSCGSNVYGQLGR K D
Sbjct: 234 IEQENNMPIVWEPRLVEELRGVHVLDIACGLDHSLVLCRDGVLLSCGSNVYGQLGRAKID 293

Query: 303 MGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVP 362
           +G+FPV+++F PV I++GLGHSLAIC+   S+V+ G   I SWGWN SSQLGR G   +P
Sbjct: 294 LGVFPVEMSFSPVFIAAGLGHSLAICQFGESDVSVGTTNIASWGWNLSSQLGRPGDGKLP 353

Query: 363 LVVEGLEGES 372
            +++ L+GE+
Sbjct: 354 SLIDALDGEN 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334779|ref|NP_001078735.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|8978337|dbj|BAA98190.1| regulator of chromosome condensation (cell cycle regulatory protein) like [Arabidopsis thaliana] gi|332008270|gb|AED95653.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/375 (60%), Positives = 271/375 (72%), Gaps = 13/375 (3%)

Query: 2   RLLKSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVP 60
           R    V+ N   V+  +    S     V+SFGDG+ GALGL +S + G+G DAYEPT V 
Sbjct: 21  RFCTHVLFN--GVVRRQFTSTSGERRTVMSFGDGNLGALGLSSSSIPGMGMDAYEPTVVS 78

Query: 61  GLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
            LPSD++S+SAGHYHSLAVT++G +WAWGRN+E QLGR  ++SR + ++PKRVEGL+ VN
Sbjct: 79  NLPSDISSISAGHYHSLAVTSSGEIWAWGRNDEGQLGRIVIDSRDSRSEPKRVEGLENVN 138

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
           V AAFASGVVS+AIGDDGSLWVWG+SKRGQLGLG  I EA VPSRVE LA E +VKVS G
Sbjct: 139 VQAAFASGVVSAAIGDDGSLWVWGRSKRGQLGLGNGIIEARVPSRVENLAAEHVVKVSLG 198

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
           WGHALA T DGK+FGWGY ADGR+GN+G  LE+S LDS  D S +         +E A+K
Sbjct: 199 WGHALALTVDGKVFGWGYVADGRVGNVGLPLEASLLDSITDGSMKGHHAAGDLNLEAAEK 258

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLG 297
            V E M KE  MPI WEP LVE     +V DIACG DHSL+L  +G LLS GSN+YGQLG
Sbjct: 259 KVVEAMSKENDMPIAWEPCLVEETCNEKVADIACGSDHSLILCHDGTLLSAGSNIYGQLG 318

Query: 298 REKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
           R KQD+GM PVDI   P+SI++GLGHSLAIC         G R I+SWGWNRS QLGR  
Sbjct: 319 RSKQDLGMKPVDITESPISIAAGLGHSLAIC-------NRGERNILSWGWNRSRQLGRGK 371

Query: 358 PDNVPLVVEGLEGES 372
           P+N+P  VEG +GES
Sbjct: 372 PENLPREVEGFDGES 386

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792001|ref|XP_002863885.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] gi|297309720|gb|EFH40144.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/349 (64%), Positives = 264/349 (75%), Gaps = 13/349 (3%)

Query: 29  VVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA 87
           V+SFGDG+ GALGL +S + G+G DAYEPT V  LPSD++ +SAGHYHSLAVT  G +WA
Sbjct: 46  VMSFGDGNHGALGLSSSSIPGMGMDAYEPTVVSNLPSDISFISAGHYHSLAVTFGGEIWA 105

Query: 88  WGRNNEVQLGRGALES-RATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           WGRN+E QLGR A++S R + ++PKRVEGLD VNV AAFASGVVS+AIGDDGSLWVWG+S
Sbjct: 106 WGRNDEGQLGRIAVDSGRDSRSEPKRVEGLDNVNVRAAFASGVVSAAIGDDGSLWVWGRS 165

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           KRGQLGLGK I EA VPSRVE LA E +VKVS GWGHALA T DGK+FGWGY ADGR+GN
Sbjct: 166 KRGQLGLGKGIIEARVPSRVETLAAEHVVKVSLGWGHALALTVDGKVFGWGYVADGRVGN 225

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE---G 263
           +G  LE+S LDS  D  S  DQ  +   +E A+K V E M KE  MPI WEP LVE    
Sbjct: 226 VGLPLEASLLDSITD-GSMKDQHAADLNLEAAEKKVVEAMSKENDMPIAWEPCLVEETRN 284

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGH 323
           V+V DIACG DHSL+L  +G LLS GSN+YGQLGR KQD+GM PVDI   P+SI++GLGH
Sbjct: 285 VKVADIACGSDHSLILCHDGTLLSSGSNIYGQLGRSKQDLGMTPVDITESPISIAAGLGH 344

Query: 324 SLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGES 372
           SLAIC           R I+SWGWNRS QLGR  P+++P  VEG +GES
Sbjct: 345 SLAICNRDE-------RKILSWGWNRSRQLGRGKPEHLPREVEGFDGES 386

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
TAIR|locus:2156233	455	RUG2 "RCC1/UVR8/GEF-like 2" [A	0.951	0.778	0.614	1.4e-110
TAIR|locus:504956339	434	RUG1 "AT5G08710" [Arabidopsis	0.524	0.449	0.362	8.4e-30
TAIR|locus:2076889	393	AT3G02510 "AT3G02510" [Arabido	0.510	0.483	0.360	4.5e-27
TAIR|locus:2163986	440	UVR8 "UVB-RESISTANCE 8" [Arabi	0.771	0.652	0.309	3.6e-26
TAIR|locus:2146142	396	AT5G16040 "AT5G16040" [Arabido	0.424	0.398	0.374	1.1e-25
ZFIN|ZDB-GENE-030131-7951	531	rcbtb1 "regulator of chromosom	0.481	0.337	0.358	1.2e-23
MGI|MGI:1917200	551	Rcbtb2 "regulator of chromosom	0.508	0.343	0.348	2.2e-23
UNIPROTKB|F1N7C1	1016	HERC6 "Uncharacterized protein	0.715	0.261	0.286	3.8e-23
UNIPROTKB|O95199	551	RCBTB2 "RCC1 and BTB domain-co	0.508	0.343	0.333	7.8e-23
UNIPROTKB|H0YEL8	299	SERGEF "Secretion-regulating g	0.381	0.474	0.348	8.3e-23

TAIR|locus:2156233 RUG2 "RCC1/UVR8/GEF-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1092 (389.5 bits), Expect = 1.4e-110, P = 1.4e-110
 Identities = 228/371 (61%), Positives = 267/371 (71%)

Query:    11 HV--NVLTSRIFMRSASGT--AVVSFGDGSQGALGLPTS-LTGVGGDAYEPTRVPGLPSD 65
             HV  N +  R F  S SG    V+SFGDG+ GALGL +S + G+G DAYEPT V  LPSD
Sbjct:    25 HVLFNGVVRRQFT-STSGERRTVMSFGDGNLGALGLSSSSIPGMGMDAYEPTVVSNLPSD 83

Query:    66 VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALES-RATWNDPKRVEGLDQVNVCAA 124
             ++S+SAGHYHSLAVT++G +WAWGRN+E QLGR  ++S R + ++PKRVEGL+ VNV AA
Sbjct:    84 ISSISAGHYHSLAVTSSGEIWAWGRNDEGQLGRIVIDSSRDSRSEPKRVEGLENVNVQAA 143

Query:   125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
             FASGVVS+AIGDDGSLWVWG+SKRGQLGLG  I EA VPSRVE LA E +VKVS GWGHA
Sbjct:   144 FASGVVSAAIGDDGSLWVWGRSKRGQLGLGNGIIEARVPSRVENLAAEHVVKVSLGWGHA 203

Query:   185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQKLVSE 244
             LA T DGK+FGWGY ADGR+GN+G  LE+S LDS                   A+K V E
Sbjct:   204 LALTVDGKVFGWGYVADGRVGNVGLPLEASLLDSITDGSMKGHHAAGDLNLEAAEKKVVE 263

Query:   245 GMEKEKYMPIIWEPFLVEGV---EVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
              M KE  MPI WEP LVE     +V DIACG DHSL+L  +G LLS GSN+YGQLGR KQ
Sbjct:   264 AMSKENDMPIAWEPCLVEETCNEKVADIACGSDHSLILCHDGTLLSAGSNIYGQLGRSKQ 323

Query:   302 DMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
             D+GM PVDI   P+SI++GLGHSLAIC         G R I+SWGWNRS QLGR  P+N+
Sbjct:   324 DLGMKPVDITESPISIAAGLGHSLAICN-------RGERNILSWGWNRSRQLGRGKPENL 376

Query:   362 PLVVEGLEGES 372
             P  VEG +GES
Sbjct:   377 PREVEGFDGES 387

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504956339 RUG1 "AT5G08710" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 8.4e-30, Sum P(2) = 8.4e-30
 Identities = 75/207 (36%), Positives = 108/207 (52%)

Query:     3 LLKSVVHNHVNVLTSRIFMRSASGTAVVS-FGDGSQGALGLPTSLTGVGGDAYEPTRVPG 61
             LLK      + V  SR ++ S SG    + +G G  G LGL     G     + P     
Sbjct:    25 LLKDSKLGPIGVCCSR-WVSSESGKRFAAMWGSGDYGRLGL-----GNLDSQWTPAVCSA 78

Query:    62 LPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
             L    +T+V+ G  H+L +T    V+A G N+  QLG   ++S A   DP  V GLD+ +
Sbjct:    79 LSDHSITAVACGGAHTLFLTETRRVFATGLNDCGQLGVSDVKSHAM--DPLEVSGLDK-D 135

Query:   121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI-VPSRVEALAGEKIVKVSF 179
             +    A    S+AI  DG L++WGK+  GQLGLGK     + VP++VEAL G  I  V+ 
Sbjct:   136 ILHISAGYYHSAAITVDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEALHGITIQSVAL 195

Query:   180 GWGHALAQTEDGKLFGWGYSADGRIGN 206
             G  H++A T+ G++  WG    GR+G+
Sbjct:   196 GSEHSVAVTDGGEVLSWGGGGSGRLGH 222

GO:0003682 "chromatin binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0008536 "Ran GTPase binding" evidence=ISS

TAIR|locus:2076889 AT3G02510 "AT3G02510" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
 Identities = 71/197 (36%), Positives = 108/197 (54%)

Query:    23 SASGT-AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTN 81
             +A GT +VV   +G     G P    G       P RV GL  +V  ++ G +H+LA+  
Sbjct:   156 AAGGTHSVVLTREGHVWTWGQPWP-PGDIKQISVPVRVQGL-ENVRLIAVGAFHNLALEE 213

Query:    82 NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
             +G + AWG N   QLG G  +++ T + P  V+GLD + +    A G  S+A+ D G ++
Sbjct:   214 DGRLLAWGNNEYGQLGTG--DTQPT-SHPVPVQGLDDLTLVDIAAGGWHSTALTDKGEVY 270

Query:   142 VWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSA 200
              WG+ + G+LGLG  D +  +VP +V  LA E I++VS G  H++A T DG++F +G   
Sbjct:   271 GWGRGEHGRLGLGDNDKSSKMVPQKVNLLAEEDIIQVSCGGTHSVALTRDGRIFSFGRGD 330

Query:   201 DGRIGNLGKALESSPLD 217
              GR+G   K     PL+
Sbjct:   331 HGRLGYGRKVTTGQPLE 347

GO:0003682 "chromatin binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008536 "Ran GTPase binding" evidence=ISS

TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.6e-26, P = 3.6e-26
 Identities = 97/313 (30%), Positives = 142/313 (45%)

Query:    23 SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
             S SG  V S+G G  G LG      G   D + P  +  L    +  ++ G  H LAVT 
Sbjct:    83 SQSGMEVYSWGWGDFGRLG-----HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 137

Query:    82 NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
              G V +WGRN   QLG G  E       P++++  + + +    A    ++A+ +DG L+
Sbjct:   138 EGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLY 194

Query:   142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
              WG  + G LGLG D T+ +VP RV +  GEK+  V+ GW H ++ +  G L+ +G+S  
Sbjct:   195 GWGWGRYGNLGLG-DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 253

Query:   202 GRIGN--LGKALESSPLD--SNXXXXXXXXXXXXXXXXXKAQKLVSEGMEKEKYMPI--- 254
             G++G+  L   L    L+  SN                    KL   G  K   + +   
Sbjct:   254 GQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNN 313

Query:   255 --IWEPFLV---EGVEVVDIACGFDHSL-VLGRNGVLLSCGSNVYGQLG-REKQDMGMFP 307
                  P  V   +  +VV ++CG+ H+L V  RN V  + G    GQLG  E  D   FP
Sbjct:   314 LDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVF-AWGRGTNGQLGIGESVDRN-FP 371

Query:   308 VDINFHPVSISSG 320
               I    V  +SG
Sbjct:   372 KIIEALSVDGASG 384

GO:0005737 "cytoplasm" evidence=ISM

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0009411 "response to UV" evidence=IMP

GO:0003682 "chromatin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0010224 "response to UV-B" evidence=IEP;IGI

GO:0000785 "chromatin" evidence=IDA

GO:0009649 "entrainment of circadian clock" evidence=IMP

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0042803 "protein homodimerization activity" evidence=IDA

TAIR|locus:2146142 AT5G16040 "AT5G16040" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 61/163 (37%), Positives = 96/163 (58%)

Query:    56 PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
             P RV GL  +V  ++ G +H+LA+  +G +WAWG N   QLG G  + R+    P  V+G
Sbjct:   189 PVRVQGL-ENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSY---PIPVQG 244

Query:   116 LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG-KDITEAIVPSRVEALAGEKI 174
             LD + +    A G  S+A+ ++G ++ WG+ + G+LG G  D +  ++P +V  LAGE I
Sbjct:   245 LDDLTLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLLAGEDI 304

Query:   175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLD 217
             ++VS G  H++A T DG++F +G    GR+G   K     PL+
Sbjct:   305 IQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLE 347

GO:0003682 "chromatin binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008536 "Ran GTPase binding" evidence=ISS

ZFIN|ZDB-GENE-030131-7951 rcbtb1 "regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1" [Danio rerio (taxid:7955)]

 Score = 278 (102.9 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 67/187 (35%), Positives = 106/187 (56%)

Query:    31 SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGR 90
             ++G      LG  T+  GV       T + G    VT VS G +HSLA+T+ G V+AWG 
Sbjct:    98 AWGHNGYSQLGNGTTNQGVS-PILVSTNLQG--KRVTEVSCGSHHSLALTHEGEVFAWGY 154

Query:    91 NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGKSKRG 149
             NN  Q+G G+  ++ T   P++V    Q  V    A G  SS A+ D+G ++ WG +  G
Sbjct:   155 NNCGQVGSGSTANQPT---PRKVSNCLQNKVIVNIACGQTSSMAVTDNGEVYGWGYNGNG 211

Query:   150 QLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK 209
             QLGLG +  + + P R+ AL G  +++++ G+ H+LA T++G L+ WG +  G++G   K
Sbjct:   212 QLGLGNNGNQ-LTPCRLIALQGFCVLQIASGYAHSLALTDEGLLYAWGANTYGQLGTGNK 270

Query:   210 ALESSPL 216
             + + SP+
Sbjct:   271 SNQLSPV 277

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1917200 Rcbtb2 "regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2" [Mus musculus (taxid:10090)]

 Score = 276 (102.2 bits), Expect = 2.2e-23, P = 2.2e-23
 Identities = 69/198 (34%), Positives = 107/198 (54%)

Query:    19 IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLA 78
             I + +  G  V ++G  +   LG  T+  G+    +  T +      V  V+ G YHSL 
Sbjct:   111 IVLATTDGE-VFTWGHNAYSQLGNGTTNHGLV-PCHISTNLSN--KQVIEVACGSYHSLV 166

Query:    79 VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG-VVSSAIGDD 137
             +T++G V+AWG NN  Q+G G   S A    P+RV G  Q  V    A G + S A+ D 
Sbjct:   167 LTSDGEVFAWGYNNSGQVGSG---STANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVDT 223

Query:   138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
             G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H L  T++G+++ WG
Sbjct:   224 GEVYVWGYNGNGQLGLGSSGNQP-TPCRVAALQGIRVQRVACGYAHTLVLTDEGQIYAWG 282

Query:   198 YSADGRIGNLGKALESSP 215
              ++ G++G   K+ +S P
Sbjct:   283 ANSYGQLGTGNKSNQSYP 300

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1N7C1 HERC6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 279 (103.3 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 84/293 (28%), Positives = 138/293 (47%)

Query:    70 SAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGV 129
             ++G +HSL + ++G V + G N+  QLGR   +       P+R+  L+ +NV        
Sbjct:    29 ASGEHHSLLLLSDGTVQSCGDNSRGQLGR---KGTPRGEQPERIPALETLNVALVSCGKE 85

Query:   130 VSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE 189
              S A+   G ++ WG +  GQLG+G+      +P +++ LAG KI++V+ G  H++A +E
Sbjct:    86 HSLAVCHKGRVFAWGAASEGQLGIGEFKETTFIPKKIKTLAGIKIIQVACGHYHSVALSE 145

Query:   190 DGKLFGWGYSADGRIG-----------NLGKALESSPL-----DSNXXXXXXXXXXXXXX 233
             DG++F WG ++ G++G              ++LE  PL       +              
Sbjct:   146 DGQVFSWGTNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGHHSFALSLSGTSFGW 205

Query:   234 XXXKAQKLVSEGMEK--EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
                 A +L   G     ++Y P+        GV  V I+CG+ H+ VL ++G + + G N
Sbjct:   206 GSNSAGQLALSGNNAPVQRYKPVSIGALKTLGV--VSISCGYKHTAVLTQDGKVFTFGDN 263

Query:   292 VYGQLGREK--QDMGMFPVDINFHPVS-ISSGLGHSLAICEVRSSNVTGGARG 341
              YGQLG +   +  G   V+     VS I  G  H+LA        V+ G RG
Sbjct:   264 SYGQLGHDPTAEKRGPQLVERIEGLVSQIDCGSDHTLAYIYTTGQVVSFG-RG 315

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|O95199 RCBTB2 "RCC1 and BTB domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 271 (100.5 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 66/198 (33%), Positives = 107/198 (54%)

Query:    19 IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLA 78
             I + +  G  V ++G  +   LG  T+  G+    +  T +      V  V+ G YHSL 
Sbjct:   111 IVLATTEGE-VFTWGHNAYSQLGNGTTNHGLV-PCHISTNLSN--KQVIEVACGSYHSLV 166

Query:    79 VTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG-VVSSAIGDD 137
             +T++G V+AWG NN  Q+G G+  ++     P+RV G  Q  V    A G +   A+ D 
Sbjct:   167 LTSDGEVFAWGYNNSGQVGSGSTVNQPI---PRRVTGCLQNKVVVTIACGQMCCMAVVDT 223

Query:   138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWG 197
             G ++VWG +  GQLGLG    +   P RV AL G ++ +V+ G+ H L  T++G+++ WG
Sbjct:   224 GEVYVWGYNGNGQLGLGNSGNQP-TPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWG 282

Query:   198 YSADGRIGNLGKALESSP 215
              ++ G++G   K+ +S P
Sbjct:   283 ANSYGQLGTGNKSNQSYP 300

GO:0005087 "Ran guanyl-nucleotide exchange factor activity" evidence=TAS

UNIPROTKB|H0YEL8 SERGEF "Secretion-regulating guanine nucleotide exchange factor" [Homo sapiens (taxid:9606)]

 Score = 216 (81.1 bits), Expect = 8.3e-23, Sum P(2) = 8.3e-23
 Identities = 54/155 (34%), Positives = 78/155 (50%)

Query:    66 VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRA-----TWNDPKRVEGLDQVN 120
             V  ++AG  H++A T +G V+ WG       GR     +      T  +P RV GL+   
Sbjct:    19 VVCIAAGLRHAVAATASGIVFQWG-TGLASCGRRLCPGQTLPLFFTAKEPSRVTGLENSK 77

Query:   121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA--LAGEKIVKVS 178
                  A    S+++ D G ++VWG +K GQL    +     VP ++EA     EK+  + 
Sbjct:    78 AMCVLAGSDHSASLTDAGEVYVWGSNKHGQLA--NEAAFLPVPQKIEAHCFQNEKVTAIW 135

Query:   179 FGWGHALAQTEDGKLFGWGYSADGRIGNLGKALES 213
              GW H +AQTE GK+F WG  AD   G LG+ LE+
Sbjct:   136 SGWTHLVAQTETGKMFTWG-RAD--YGQLGRKLET 167

GO:0050709 "negative regulation of protein secretion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	372
COG5184	476	COG5184, ATS1, Alpha-tubulin suppressor and relate	4e-21
COG5184	476	COG5184, ATS1, Alpha-tubulin suppressor and relate	6e-19
COG5184	476	COG5184, ATS1, Alpha-tubulin suppressor and relate	7e-19
COG5184	476	COG5184, ATS1, Alpha-tubulin suppressor and relate	1e-18
pfam00415	50	pfam00415, RCC1, Regulator of chromosome condensat	2e-09
pfam13540	30	pfam13540, RCC1_2, Regulator of chromosome condens	3e-07
pfam13540	30	pfam13540, RCC1_2, Regulator of chromosome condens	3e-06
pfam00415	50	pfam00415, RCC1, Regulator of chromosome condensat	2e-05
pfam13540	30	pfam13540, RCC1_2, Regulator of chromosome condens	4e-05
pfam00415	50	pfam00415, RCC1, Regulator of chromosome condensat	1e-04
pfam00415	50	pfam00415, RCC1, Regulator of chromosome condensat	1e-04

>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

 Score = 94.1 bits (234), Expect = 4e-21
 Identities = 85/365 (23%), Positives = 137/365 (37%), Gaps = 100/365 (27%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDA---YEPTRVPGLPSD---VTSVSAGHYHSLAVTNN 82
           V S+G      LGL       G D      P   P    D   +  ++ G  HSL + ++
Sbjct: 70  VYSWGSNGMNELGL-------GNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHD 122

Query: 83  GAVWAWGRNNEVQLGRGALESRATWND-------------PKRVEGLDQV----NVCAAF 125
           G +++WG N++  LGR   +     N+             P +V G         V    
Sbjct: 123 GNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLA 182

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGK-----DITEAIVPSRVEALAGEKIVKVSFG 180
               +S  +  DG ++ WG  + G+LG G        +    P +V   A   IV+++ G
Sbjct: 183 CGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKA---IVQLAAG 239

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
             H +A T +GK++GWG     + G LG              +SE  + +          
Sbjct: 240 ADHLIALTNEGKVYGWGS---NQKGQLG------------RPTSERLKLV---------- 274

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE- 299
                        ++ +PF +    +  +ACG DHSL L  +G + + G N++GQLG   
Sbjct: 275 ------------VLVGDPFAIR--NIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGS 320

Query: 300 ---------KQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNR 349
                    K +       +     SIS+G  HSL +             G + ++G   
Sbjct: 321 DGEIGALTTKPNYKQLLSGVTI--CSISAGESHSLILR----------KDGTLYAFGRGD 368

Query: 350 SSQLG 354
             QLG
Sbjct: 369 RGQLG 373

Length = 476

>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

 Score = 87.6 bits (217), Expect = 6e-19
 Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 13/232 (5%)

Query: 25  SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGA 84
           +   V  +G   +G LG PTS              P    ++  V+ G  HSLA+  +G 
Sbjct: 248 NEGKVYGWGSNQKGQLGRPTSER---LKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGE 304

Query: 85  VWAWGRNNEVQLGRGA-LESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW 143
           ++AWG N   QLG G+  E  A    P   + L  V +C+  A    S  +  DG+L+ +
Sbjct: 305 IYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAF 364

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G+  RGQLG+ ++IT  +      ++A  K+ +V+ G  H +A+T+DG ++ WG+   G 
Sbjct: 365 GRGDRGQLGIQEEITIDVSTPTKLSVAI-KLEQVACGTHHNIARTDDGSVYSWGWGEHGN 423

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEI-------SSSTIEKAQKLVSEGMEK 248
           +GN G       + + I +   S   I         S IE+    V E  EK
Sbjct: 424 LGN-GPKEADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEETMDTVIELFEK 474

Length = 476

>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

 Score = 87.2 bits (216), Expect = 7e-19
 Identities = 84/350 (24%), Positives = 140/350 (40%), Gaps = 69/350 (19%)

Query: 27  TAVVSFGDGSQGALGLPTSLT-------GVGGDAYE----PTRVPGL-----PSDVTSVS 70
             + S+GD   GALG              +  D YE    P +VPG         V  ++
Sbjct: 123 GNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLA 182

Query: 71  AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV 130
            G   S+ +T +G V++WG     +LG+G+ ++    +       + +  +    A    
Sbjct: 183 CGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIVQLAAGADH 242

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTED 190
             A+ ++G ++ WG +++GQLG        +V    +  A   I  V+ G  H+LA  ED
Sbjct: 243 LIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDED 302

Query: 191 GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250
           G+++ WG +  G++G                  + SD EI + T             K  
Sbjct: 303 GEIYAWGVNIFGQLG------------------AGSDGEIGALTT------------KPN 332

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ------DMG 304
           Y        L+ GV +  I+ G  HSL+L ++G L + G    GQLG +++         
Sbjct: 333 Y------KQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPT 386

Query: 305 MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
              V I      ++ G  H++A  +  S         + SWGW     LG
Sbjct: 387 KLSVAIKLE--QVACGTHHNIARTDDGS---------VYSWGWGEHGNLG 425

Length = 476

>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

 Score = 86.4 bits (214), Expect = 1e-18
 Identities = 70/307 (22%), Positives = 115/307 (37%), Gaps = 76/307 (24%)

Query: 75  HSLAVTNNGAVWAWGRNNEVQLGRGALES---RATWNDPKRVEGLDQVNVCAAFASGVVS 131
           H+  +    +V++WG N   +LG G  E+   R   N   R+   D+ ++      G  S
Sbjct: 60  HTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRI---DKASIIKIACGGNHS 116

Query: 132 SAIGDDGSLWVWGKSKRGQLG-------------------LGKDITEAIVPSRVEALAGE 172
             +  DG+L+ WG +  G LG                      + T   VP    A +  
Sbjct: 117 LGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHL 176

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
           ++VK++ GW  ++  T DG+++ WG                        R  E  Q    
Sbjct: 177 RVVKLACGWEISVILTADGRVYSWGTF----------------------RCGELGQGSYK 214

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNV 292
           ++ + +               I + P  V    +V +A G DH + L   G +   GSN 
Sbjct: 215 NSQKTS---------------IQFTPLKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQ 259

Query: 293 YGQLGREK-QDMGMFPVDINF----HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
            GQLGR   + + +  +  +     +   ++ G  HSLA+ E            I +WG 
Sbjct: 260 KGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGE---------IYAWGV 310

Query: 348 NRSSQLG 354
           N   QLG
Sbjct: 311 NIFGQLG 317

Length = 476

>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat

 Score = 52.1 bits (126), Expect = 2e-09
 Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
           DG ++ WG+++ GQLGLG +     VP  VE L+G ++V+V+ G  H +A
Sbjct: 1   DGRVYTWGRNEYGQLGLGDEEDVL-VPQLVEGLSGVRVVQVACGASHTVA 49

Length = 50

>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat

 Score = 45.9 bits (110), Expect = 3e-07
 Identities = 14/28 (50%), Positives = 22/28 (78%)

Query: 66 VTSVSAGHYHSLAVTNNGAVWAWGRNNE 93
          V S++AG YH+LA+T++G V+ WG N+ 
Sbjct: 1  VVSIAAGDYHTLALTSDGTVYCWGDNSY 28

Length = 30

>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQ 295
           VV IA G  H+L L  +G +   G N YGQ
Sbjct: 1   VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30

Length = 30

>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 31 SFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAV 79
          ++G    G LGL         D   P  V GL    V  V+ G  H++A+
Sbjct: 6  TWGRNEYGQLGLGDEE-----DVLVPQLVEGLSGVRVVQVACGASHTVAL 50

Length = 50

>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           +V ++ G  H LA T DG ++ WG ++ G+
Sbjct: 1   VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30

Length = 30

>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
           +G V+ WGRN   QLG G  E       P+ VEGL  V V
Sbjct: 1   DGRVYTWGRNEYGQLGLGDEEDVLV---PQLVEGLSGVRV 37

Length = 50

>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 282 NGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSISSGLGHSLAI 327
           +G + + G N YGQLG   ++  + P  +        V ++ G  H++A+
Sbjct: 1   DGRVYTWGRNEYGQLGLGDEEDVLVPQLVEGLSGVRVVQVACGASHTVAL 50

Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	372
COG5184	476	ATS1 Alpha-tubulin suppressor and related RCC1 dom	100.0
COG5184	476	ATS1 Alpha-tubulin suppressor and related RCC1 dom	100.0
KOG1427	443	consensus Uncharacterized conserved protein, conta	100.0
KOG1427	443	consensus Uncharacterized conserved protein, conta	100.0
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.95
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	99.95
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.92
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	99.81
PF00415	51	RCC1: Regulator of chromosome condensation (RCC1)	99.27
PF00415	51	RCC1: Regulator of chromosome condensation (RCC1)	99.24
PF13540	30	RCC1_2: Regulator of chromosome condensation (RCC1	99.17
PF13540	30	RCC1_2: Regulator of chromosome condensation (RCC1	99.16
KOG0941	850	consensus E3 ubiquitin protein ligase [Posttransla	99.0
KOG0941	850	consensus E3 ubiquitin protein ligase [Posttransla	98.97
KOG3669	705	consensus Uncharacterized conserved protein, conta	95.69
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	95.59
KOG3669	705	consensus Uncharacterized conserved protein, conta	94.36
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	94.04
KOG0943	3015	consensus Predicted ubiquitin-protein ligase/hyper	93.64
KOG0315	311	consensus G-protein beta subunit-like protein (con	92.26
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	91.18
KOG0943	3015	consensus Predicted ubiquitin-protein ligase/hyper	89.02
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	85.26
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	83.26
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	82.04
smart00706	35	TECPR Beta propeller repeats in Physarum polycepha	81.25

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

Probab=100.00  E-value=4.3e-47  Score=345.21  Aligned_cols=305  Identities=25%  Similarity=0.381  Sum_probs=244.4

Q ss_pred             eeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCC-----------CCCCCCccceeecCCC-----CCCeEEEecCCCce
Q 042844           13 NVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSL-----------TGVGGDAYEPTRVPGL-----PSDVTSVSAGHYHS   76 (372)
Q Consensus        13 ~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~-----------~~~~~~~~~p~~i~~~-----~~~i~~I~~G~~h~   76 (372)
                      ++||..|+++++.||.||+||.|..|+||.....           ....+...+|..++..     +.++++++||++++
T Consensus       109 ~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~s  188 (476)
T COG5184         109 IACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEIS  188 (476)
T ss_pred             eecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceE
Confidence            7899999999999999999999999999997620           1123446788888752     23799999999999


Q ss_pred             EEEecCCcEEEEeCCCCCCCcCCCCCCCCc-cCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 042844           77 LAVTNNGAVWAWGRNNEVQLGRGALESRAT-WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGK  155 (372)
Q Consensus        77 ~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~-~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~  155 (372)
                      ++|+++|+||+||....+.++.+...+... ...++++... ...|+++++|.+|.++|+++|++|.||++..||||...
T Consensus       189 vil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~  267 (476)
T COG5184         189 VILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPT  267 (476)
T ss_pred             EEEccCCcEEEecCccccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCch
Confidence            999999999999999988888885543322 1122333222 45799999999999999999999999999999999875


Q ss_pred             CCcccccceEeccc-CCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhh
Q 042844          156 DITEAIVPSRVEAL-AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST  234 (372)
Q Consensus       156 ~~~~~~~p~~i~~~-~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (372)
                      . ....++.++..+ .-..|+.|+||.+|++||+++|+||+||.|.++|++.. +..+...                   
T Consensus       268 ~-e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~-~~~~~~a-------------------  326 (476)
T COG5184         268 S-ERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAG-SDGEIGA-------------------  326 (476)
T ss_pred             h-hhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccC-cccccce-------------------
Confidence            5 333333343332 22347899999999999999999999999999999988 2211100                   


Q ss_pred             HHHhhhhhhcccccccCCCceeceeeec---CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCC--CCCccccee
Q 042844          235 IEKAQKLVSEGMEKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK--QDMGMFPVD  309 (372)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~---~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~--~~~~~~P~~  309 (372)
                                         ..+.|....   ...|..|++|..|+++|..+|.||+||+++++|||..+  ......|.+
T Consensus       327 -------------------~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~  387 (476)
T COG5184         327 -------------------LTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTK  387 (476)
T ss_pred             -------------------eeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCccc
Confidence                               112233222   55699999999999999999999999999999999988  555666666


Q ss_pred             ec--cccEEEecCCCceEEEEeeccccccCCCccEEEecCCCCCCccCCC---CCCCceEEec
Q 042844          310 IN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG---PDNVPLVVEG  367 (372)
Q Consensus       310 v~--~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~---~~~~p~~i~~  367 (372)
                      +.  .++.+++||..|.++.+.         +|+||+||+|++||||+|.   +...|+.|++
T Consensus       388 ls~~~~~~~v~~gt~~~~~~t~---------~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~  441 (476)
T COG5184         388 LSVAIKLEQVACGTHHNIARTD---------DGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQ  441 (476)
T ss_pred             cccccceEEEEecCccceeecc---------CCceEEecCchhhhccCCchhhhccccccccc
Confidence            66  679999999999999999         9999999999999999988   7777888875

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

Probab=100.00  E-value=1.2e-44  Score=329.23  Aligned_cols=295  Identities=26%  Similarity=0.427  Sum_probs=234.4

Q ss_pred             eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCC---CCeEEEecCCCceEEEecCCcEEEEeCCCC
Q 042844           17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP---SDVTSVSAGHYHSLAVTNNGAVWAWGRNNE   93 (372)
Q Consensus        17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~---~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~   93 (372)
                      ..|..+++....||+||.|..+|||++....    ....|...+..+   ..|++++||..|+++|++||+||+||.|..
T Consensus        58 ~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~----~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~  133 (476)
T COG5184          58 NKHTHLLVKMASVYSWGSNGMNELGLGNDET----KVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDD  133 (476)
T ss_pred             ccchhhhhheeeeEEEecCcceeeccCCchh----cccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcc
Confidence            4455577889999999999999999999443    368888888664   369999999999999999999999999999


Q ss_pred             CCCcCCCC-------------CCCCccCCCceeec----CCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 042844           94 VQLGRGAL-------------ESRATWNDPKRVEG----LDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKD  156 (372)
Q Consensus        94 gqlg~~~~-------------~~~~~~~~p~~i~~----~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~  156 (372)
                      |+||+...             .......+|..++.    ....+++++.||+.++++|+++|+||.||....+.++.+..
T Consensus       134 G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~  213 (476)
T COG5184         134 GALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSY  213 (476)
T ss_pred             cccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccc
Confidence            99999882             22334567888876    23458999999999999999999999999999999888744


Q ss_pred             Ccc-----cccceEecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccc
Q 042844          157 ITE-----AIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS  231 (372)
Q Consensus       157 ~~~-----~~~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (372)
                      ...     ..+|..+.   ...|+++++|.+|.++|+++|++|.||++.+||||.......                   
T Consensus       214 ~~s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~-------------------  271 (476)
T COG5184         214 KNSQKTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERL-------------------  271 (476)
T ss_pred             cccccceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhc-------------------
Confidence            222     23444444   357999999999999999999999999999999998832110                   


Q ss_pred             hhhHHHhhhhhhcccccccCCCceeceeeecCccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCC----CCcccc
Q 042844          232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ----DMGMFP  307 (372)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~----~~~~~P  307 (372)
                                          ......|.......|++|+||.+|++||+++|++|+||.|.+||||.+..    ....+|
T Consensus       272 --------------------~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~  331 (476)
T COG5184         272 --------------------KLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKP  331 (476)
T ss_pred             --------------------ccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccc
Confidence                                00111122222455899999999999999999999999999999999821    111223


Q ss_pred             eee--c--cccEEEecCCCceEEEEeeccccccCCCccEEEecCCCCCCccCCC----CCCCceEEe
Q 042844          308 VDI--N--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG----PDNVPLVVE  366 (372)
Q Consensus       308 ~~v--~--~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~----~~~~p~~i~  366 (372)
                      ...  .  ..|..+++|..|+++|..         +|.||+||.+..||||...    ...+|+++.
T Consensus       332 ~~~~~~~~~~i~~is~ge~H~l~L~~---------~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls  389 (476)
T COG5184         332 NYKQLLSGVTICSISAGESHSLILRK---------DGTLYAFGRGDRGQLGIQEEITIDVSTPTKLS  389 (476)
T ss_pred             cccccCCCceEEEEecCcceEEEEec---------CceEEEecCCccccccCcccceeecCCccccc
Confidence            222  2  458999999999999999         9999999999999999988    444555555

>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]

Probab=100.00  E-value=4.8e-40  Score=281.36  Aligned_cols=291  Identities=24%  Similarity=0.343  Sum_probs=232.9

Q ss_pred             eeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCC-CeEEEecCCCceEEEecCCcEEEEeCCCC
Q 042844           15 LTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNE   93 (372)
Q Consensus        15 ~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~-~i~~I~~G~~h~~~lt~~G~v~~~G~n~~   93 (372)
                      +...|+++++.+|++|.||.|..||||+++     .....+|+.|+.|.. +|++-+||++|+++||.+|+||.||.|.+
T Consensus        65 ~~aaH~vli~megk~~~wGRNekGQLGhgD-----~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~  139 (443)
T KOG1427|consen   65 CAAAHCVLIDMEGKCYTWGRNEKGQLGHGD-----MKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKY  139 (443)
T ss_pred             cchhhEEEEecccceeecccCccCccCccc-----hhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccccc
Confidence            456789999999999999999999999997     567899999998853 79999999999999999999999999999


Q ss_pred             CCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcc-------------c
Q 042844           94 VQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE-------------A  160 (372)
Q Consensus        94 gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~-------------~  160 (372)
                      ||||.+..+...  ..|.++-. ....|+.|.||..+++.|+..+.|.++|...|||||++.+...             +
T Consensus       140 GQlGlgn~~~~v--~s~~~~~~-~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~  216 (443)
T KOG1427|consen  140 GQLGLGNAKNEV--ESTPLPCV-VSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQ  216 (443)
T ss_pred             cccccccccccc--ccCCCccc-cCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecC
Confidence            999999987432  23322222 2337899999999999999999999999999999999865221             2


Q ss_pred             ccceEecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhh
Q 042844          161 IVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK  240 (372)
Q Consensus       161 ~~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (372)
                      ..|..+..+.+..|++++||.+|++|++++++||.||...+|.||+...+.+.                           
T Consensus       217 pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEm---------------------------  269 (443)
T KOG1427|consen  217 PRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEM---------------------------  269 (443)
T ss_pred             CCccccccccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhH---------------------------
Confidence            23455556778899999999999999999999999999999999998332222                           


Q ss_pred             hhhcccccccCCCceeceeeec-----CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec--cc
Q 042844          241 LVSEGMEKEKYMPIIWEPFLVE-----GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--FH  313 (372)
Q Consensus       241 ~~~~~~~~~~~~~~~~~p~~i~-----~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~--~~  313 (372)
                                      .|++++     ..--.++.||...++++.+-|.+|.||.+..    .++.....+|+...  .+
T Consensus       270 ----------------vpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~----~ge~~mypkP~~dlsgwn  329 (443)
T KOG1427|consen  270 ----------------VPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN----NGEDWMYPKPMMDLSGWN  329 (443)
T ss_pred             ----------------HHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc----CcccccCCCchhhcCCcc
Confidence                            233332     3445678899999999999999999998763    12333334454332  67


Q ss_pred             cEEEecCCCceEEEEeeccccccCCCccEEEecCCCCCCc-cCCC---CCCCceEEecCCC
Q 042844          314 PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL-GRMG---PDNVPLVVEGLEG  370 (372)
Q Consensus       314 i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqL-G~~~---~~~~p~~i~~~~~  370 (372)
                      +..+.|+..|.++-.          |..+.+||...+|.+ |-++   ....|+.++-|++
T Consensus       330 l~~~~~~~~h~~v~a----------d~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~  380 (443)
T KOG1427|consen  330 LRWMDSGSMHHFVGA----------DSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEG  380 (443)
T ss_pred             CCCcCccceeeeecc----------cccccccccccccccccCccccccccCccccchhcc
Confidence            899999999987665          789999999998776 4444   6667888887765

>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]

Probab=100.00  E-value=2.6e-37  Score=264.61  Aligned_cols=299  Identities=23%  Similarity=0.371  Sum_probs=241.6

Q ss_pred             CCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCC-CeEEEecCC--CceEEEecCCcEEEEeCCCCCCCcCCCC
Q 042844           25 SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGH--YHSLAVTNNGAVWAWGRNNEVQLGRGAL  101 (372)
Q Consensus        25 ~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~-~i~~I~~G~--~h~~~lt~~G~v~~~G~n~~gqlg~~~~  101 (372)
                      ..|++..+|.-..-+.|.-+-..  ..+...|.++..+.. +|+-|+.|.  -|+++|+-+|+.|.||+|..||||.++.
T Consensus        18 ~~g~ml~~g~v~wd~tgkRd~~~--~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~   95 (443)
T KOG1427|consen   18 KGGEMLFCGAVAWDITGKRDGAM--EGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDM   95 (443)
T ss_pred             CCccEEEeccchhhhhccccccc--ccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccch
Confidence            56889999988877777655332  235677777765542 577777665  7999999999999999999999999976


Q ss_pred             CCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecC
Q 042844          102 ESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW  181 (372)
Q Consensus       102 ~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~  181 (372)
                      .   ...+|+.|+.++..+|++.+||++|+++|+++|+||.||.|.+||||.++.......|.++- ....+|+.|+||.
T Consensus        96 k---~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~-~~~~~v~~v~cga  171 (443)
T KOG1427|consen   96 K---QRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPC-VVSDEVTNVACGA  171 (443)
T ss_pred             h---hccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCcc-ccCccceeecccc
Confidence            6   44689999999999999999999999999999999999999999999998877766665544 4456899999999


Q ss_pred             CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccccccCCCceeceeee
Q 042844          182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV  261 (372)
Q Consensus       182 ~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i  261 (372)
                      ++++.|+..+.+.++|.-.|||||+++..--.-                       ....+...-      .....|..|
T Consensus       172 ~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~-----------------------~~~~~~~~~------e~~pr~~~i  222 (443)
T KOG1427|consen  172 DFTVWLSSTESILTAGLPQYGQLGHGTDNEFNM-----------------------KDSSVRLAY------EAQPRPKAI  222 (443)
T ss_pred             ceEEEeecccceeecCCccccccccCcchhhcc-----------------------ccccceeee------ecCCCcccc
Confidence            999999999999999999999999984321000                       000000000      001123333


Q ss_pred             c---CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec------cccEEEecCCCceEEEEeecc
Q 042844          262 E---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN------FHPVSISSGLGHSLAICEVRS  332 (372)
Q Consensus       262 ~---~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~------~~i~~ia~G~~~s~~l~~~~~  332 (372)
                      .   ..+|++++||.+|++|++.+++||.||...+|.||....++...|.++.      .--..+.||+..++++.+   
T Consensus       223 ~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e---  299 (443)
T KOG1427|consen  223 ASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAE---  299 (443)
T ss_pred             ccccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecc---
Confidence            3   8899999999999999999999999999999999999998888888774      345688999999999999   


Q ss_pred             ccccCCCccEEEecCCCCCCccCCCCCCCceEEecCCCC
Q 042844          333 SNVTGGARGIVSWGWNRSSQLGRMGPDNVPLVVEGLEGE  371 (372)
Q Consensus       333 ~~~~~~~g~v~~wG~n~~gqLG~~~~~~~p~~i~~~~~~  371 (372)
                            -|.+|.||.+..    ++++--+|+++.+|+|.
T Consensus       300 ------~G~Lf~~g~~k~----~ge~~mypkP~~dlsgw  328 (443)
T KOG1427|consen  300 ------GGQLFMWGKIKN----NGEDWMYPKPMMDLSGW  328 (443)
T ss_pred             ------cceeEEeecccc----CcccccCCCchhhcCCc
Confidence                  999999999886    45667789999999885

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.95  E-value=9.5e-28  Score=229.23  Aligned_cols=271  Identities=23%  Similarity=0.341  Sum_probs=216.0

Q ss_pred             eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCC---eEEEecCCCceEEEecCCcEEEEeCCCC
Q 042844           17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD---VTSVSAGHYHSLAVTNNGAVWAWGRNNE   93 (372)
Q Consensus        17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~---i~~I~~G~~h~~~lt~~G~v~~~G~n~~   93 (372)
                      .....+++.-+.||+||.|.+..||++.     ......|..+..|...   +.+|+.+..|+++|++.|+||+||-...
T Consensus       132 ~~i~~~~d~pndvy~wG~N~N~tLGign-----~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~G  206 (1267)
T KOG0783|consen  132 STIHPVLDLPNDVYGWGTNVNNTLGIGN-----GKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAG  206 (1267)
T ss_pred             cccccccCCccceeEecccccccccccC-----CCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCC
Confidence            3445667788999999999999999998     4567888888766421   8999999999999999999999999999


Q ss_pred             CCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEeccc--CC
Q 042844           94 VQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL--AG  171 (372)
Q Consensus        94 gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~--~~  171 (372)
                      |.||.+...   ....|++++.+...++.+|+....|+++||++|.||+||.|.++|||..++......|.+|...  .+
T Consensus       207 GRlG~gdeq---~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg  283 (1267)
T KOG0783|consen  207 GRLGFGDEQ---YNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKG  283 (1267)
T ss_pred             CccCcCccc---ccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcc
Confidence            999999666   5678999999999999999999999999999999999999999999998776666666666532  12


Q ss_pred             -CcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhccccccc
Q 042844          172 -EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK  250 (372)
Q Consensus       172 -~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (372)
                       ..|+.++||..|++|.+.. .||+||.| .||||..+.                                         
T Consensus       284 ~~~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n-----------------------------------------  320 (1267)
T KOG0783|consen  284 FKQIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDN-----------------------------------------  320 (1267)
T ss_pred             hhhhhhhhcccceeeeeecc-eEEEeccc-CceecCCCC-----------------------------------------
Confidence             3699999999999999977 89999998 689997632                                         


Q ss_pred             CCCceeceeeec--CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec--------cccEEEecC
Q 042844          251 YMPIIWEPFLVE--GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN--------FHPVSISSG  320 (372)
Q Consensus       251 ~~~~~~~p~~i~--~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~--------~~i~~ia~G  320 (372)
                       .+.+..|+.+-  ...|.-|+|...-++++++++.+|++-+-....+  ..+....+.+.+.        .++++..+.
T Consensus       321 -~~~Vt~Pr~l~~~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~--~~n~~~lks~~V~gg~l~~~~~~~~k~~a~  397 (1267)
T KOG0783|consen  321 -ISVVTTPRRLAGLLSPVIHVVATTRATVCLLQNNSIIAFADYNQVKL--PFNVDFLKSLKVTGGPLSLTRFNVRKLLAS  397 (1267)
T ss_pred             -CceeecchhhcccccceEEEEecCccEEEEecCCcEEEEecccceec--CcchhccceeEEecCccchhhhhhhhcchh
Confidence             22223343222  5678999999999999999999999886443333  2222222333332        456677777


Q ss_pred             CCceEEEEeeccccccCCCccEEEecCCCC
Q 042844          321 LGHSLAICEVRSSNVTGGARGIVSWGWNRS  350 (372)
Q Consensus       321 ~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~  350 (372)
                      ..--+++++         -|+||+|-.++.
T Consensus       398 ~~kll~lte---------~g~Vy~w~s~ns  418 (1267)
T KOG0783|consen  398 ENKLLVLTE---------LGEVYEWDSKNS  418 (1267)
T ss_pred             hhheeeecc---------CCeEEEEecCCC
Confidence            788899999         999999987654

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=99.95  E-value=2.1e-26  Score=227.90  Aligned_cols=315  Identities=21%  Similarity=0.300  Sum_probs=218.0

Q ss_pred             eeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecC--CcEEEEeC
Q 042844           13 NVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNN--GAVWAWGR   90 (372)
Q Consensus        13 ~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~--G~v~~~G~   90 (372)
                      +-+++++.++.+.+|+||.-|...  .+|+...     -+.+..+.   ++++|++|+.|-....++.-.  |-+++-|+
T Consensus       484 L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~-----G~nWmEL~---l~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D  553 (3738)
T KOG1428|consen  484 LHFTREMAFIQARSGKVYYAGNGT--RFGLFET-----GNNWMELC---LPEPIVQISVGIDTIMFRSGAGHGWIASVDD  553 (3738)
T ss_pred             cccchhhhhhhhcCccEEEecCcc--EEeEEcc-----CCceEEec---CCCceEEEEeccchhheeeccCcceEEeccC
Confidence            446788889999999999999865  5676652     23444444   448999999999888887654  45555553


Q ss_pred             CCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccC
Q 042844           91 NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALA  170 (372)
Q Consensus        91 n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~  170 (372)
                      ...             ..+..++...+..+|+++.+...-.-.++++|++|+.|...         ........++..+.
T Consensus       554 ~k~-------------~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~t---------m~~n~SSqmln~L~  611 (3738)
T KOG1428|consen  554 KKR-------------NGRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHT---------MRVNVSSQMLNGLD  611 (3738)
T ss_pred             ccc-------------ccchhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeeccee---------EEecchHHHhhccc
Confidence            211             11222233345568999988777788999999999998732         22223445666777


Q ss_pred             CCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCC-CCC-----CCcCCCCCCccccc-----------hh
Q 042844          171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESS-PLD-----SNIDRSSESDQEIS-----------SS  233 (372)
Q Consensus       171 ~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~-~~~-----~~~~~~~~~~~~~~-----------~~  233 (372)
                      +.-|.+++.|..|.++++.+|+||+||.|+.+|.|+-..+.... |..     +.+.++..+.=..+           ..
T Consensus       612 ~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~  691 (3738)
T KOG1428|consen  612 NVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSA  691 (3738)
T ss_pred             cceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccc
Confidence            88899999999999999999999999999999999865432221 111     11111111110000           00


Q ss_pred             h-HH------Hhhhhhhcc-------------cccc-------------------cCCCceeceeeec------CccEEE
Q 042844          234 T-IE------KAQKLVSEG-------------MEKE-------------------KYMPIIWEPFLVE------GVEVVD  268 (372)
Q Consensus       234 ~-~~------~~~~~~~~~-------------~~~~-------------------~~~~~~~~p~~i~------~~~i~~  268 (372)
                      . +.      +.......+             .-.+                   ...-....|-++.      ..++.+
T Consensus       692 ~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~s  771 (3738)
T KOG1428|consen  692 RGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSS  771 (3738)
T ss_pred             cccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEE
Confidence            0 00      000000000             0000                   0000111233332      678999


Q ss_pred             EEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec----cccEEEecCCCceEEEEeeccccccCCCccEEE
Q 042844          269 IACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARGIVS  344 (372)
Q Consensus       269 I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~----~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~  344 (372)
                      |+||..|+++|.+|++||++|.|.|||||.|+......|+++.    ..+++|+||++|++++.+         ||.||.
T Consensus       772 VSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~---------DGsVFT  842 (3738)
T KOG1428|consen  772 VSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRAN---------DGSVFT  842 (3738)
T ss_pred             EeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEec---------CCcEEE
Confidence            9999999999999999999999999999999999999999874    468999999999999999         999999


Q ss_pred             ecCCCCCCccCCC-----CCCCceEEecC
Q 042844          345 WGWNRSSQLGRMG-----PDNVPLVVEGL  368 (372)
Q Consensus       345 wG~n~~gqLG~~~-----~~~~p~~i~~~  368 (372)
                      +|.-..||||++.     ....|.+++++
T Consensus       843 FGaF~KGQL~RP~~e~~~WNA~Pe~v~~~  871 (3738)
T KOG1428|consen  843 FGAFGKGQLARPAGEKAGWNAIPEKVSGF  871 (3738)
T ss_pred             eccccCccccCccccccccccCCCcCCCC
Confidence            9999999999987     55678887765

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.92  E-value=4.5e-25  Score=211.10  Aligned_cols=235  Identities=23%  Similarity=0.366  Sum_probs=190.4

Q ss_pred             eEEEecCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecC--CceeEEEEeecCcEEEEEeCCCcEEEE
Q 042844           66 VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL--DQVNVCAAFASGVVSSAIGDDGSLWVW  143 (372)
Q Consensus        66 i~~I~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~--~~~~i~~i~~g~~~~~~lt~~g~v~~~  143 (372)
                      +-.+-|...| .+++.-.+||.||.|....||.+..+   ....|..+..+  +++-+.+|..+.+|+++|++.|+||+|
T Consensus       126 ~~r~~~~~i~-~~~d~pndvy~wG~N~N~tLGign~~---~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~c  201 (1267)
T KOG0783|consen  126 LSRVLSSTIH-PVLDLPNDVYGWGTNVNNTLGIGNGK---EPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVC  201 (1267)
T ss_pred             Hhhccccccc-cccCCccceeEecccccccccccCCC---CCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEe
Confidence            3344444444 35677789999999999999999988   44678877765  355678899999999999999999999


Q ss_pred             eCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCC
Q 042844          144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRS  223 (372)
Q Consensus       144 G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~  223 (372)
                      |.+.-|+||++ +......|.+++.+.+.+|.+|++..+|+++||+.|.||.||.|..+|||.....             
T Consensus       202 GhG~GGRlG~g-deq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~-------------  267 (1267)
T KOG0783|consen  202 GHGAGGRLGFG-DEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDE-------------  267 (1267)
T ss_pred             ccCCCCccCcC-cccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCch-------------
Confidence            99999999999 4477789999999999999999999999999999999999999999999987321             


Q ss_pred             CCCccccchhhHHHhhhhhhcccccccCCCceeceeeec-CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCC
Q 042844          224 SESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE-GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD  302 (372)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~-~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~  302 (372)
                                              .....|....+..+. ...|+.|+||..|++|-+.. .||+||.| .||||..+..
T Consensus       268 ------------------------~~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n~  321 (1267)
T KOG0783|consen  268 ------------------------LKKDDPIQITARRIKGFKQIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDNI  321 (1267)
T ss_pred             ------------------------hhcCchhhhhhHhhcchhhhhhhhcccceeeeeecc-eEEEeccc-CceecCCCCC
Confidence                                    111222333455555 45899999999999888855 69999998 7999987654


Q ss_pred             C-cccceeec---cccEEEecCCCceEEEEeeccccccCCCccEEEecCCCCCCc
Q 042844          303 M-GMFPVDIN---FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL  353 (372)
Q Consensus       303 ~-~~~P~~v~---~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqL  353 (372)
                      . ...|..+.   ..|..|+|....++++++         ++.+|++-+.+.-.+
T Consensus       322 ~~Vt~Pr~l~~~~~~v~~v~a~~~ATVc~~~---------~~~i~~~ady~~~k~  367 (1267)
T KOG0783|consen  322 SVVTTPRRLAGLLSPVIHVVATTRATVCLLQ---------NNSIIAFADYNQVKL  367 (1267)
T ss_pred             ceeecchhhcccccceEEEEecCccEEEEec---------CCcEEEEecccceec
Confidence            3 34575443   789999999999999999         999999987665444

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=99.81  E-value=3.4e-19  Score=177.53  Aligned_cols=181  Identities=24%  Similarity=0.406  Sum_probs=141.4

Q ss_pred             eeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCC-CeEEEecCCCceEEEecCCcEEEEeCCCC
Q 042844           15 LTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWAWGRNNE   93 (372)
Q Consensus        15 ~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~-~i~~I~~G~~h~~~lt~~G~v~~~G~n~~   93 (372)
                      +....+-.+.++|++|..|--.  .           ...-....+..+.. -|.+++.|..|+++++.+|+||.||.|+.
T Consensus       576 ~s~~VY~~vSenGkifM~G~~t--m-----------~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~  642 (3738)
T KOG1428|consen  576 ASGHVYGYVSENGKIFMGGLHT--M-----------RVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNM  642 (3738)
T ss_pred             eeeEEEEEEccCCeEEeeccee--E-----------EecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCc
Confidence            4455667788999999998531  0           00011123333433 38999999999999999999999999999


Q ss_pred             CCCcCCCCCCCCc-------------------------------------------------------------------
Q 042844           94 VQLGRGALESRAT-------------------------------------------------------------------  106 (372)
Q Consensus        94 gqlg~~~~~~~~~-------------------------------------------------------------------  106 (372)
                      +|+|+-.......                                                                   
T Consensus       643 ~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~C  722 (3738)
T KOG1428|consen  643 NQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLC  722 (3738)
T ss_pred             ccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceecccc
Confidence            9999754321100                                                                   


Q ss_pred             ----------------------cCC-------Ccee---ecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCC
Q 042844          107 ----------------------WND-------PKRV---EGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLG  154 (372)
Q Consensus       107 ----------------------~~~-------p~~i---~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~  154 (372)
                                            ...       |.++   ...-++++.+++||..|+++|-+|++||+||+|.+||||.+
T Consensus       723 r~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~G  802 (3738)
T KOG1428|consen  723 RPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVG  802 (3738)
T ss_pred             ccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcC
Confidence                                  001       1111   12345789999999999999999999999999999999999


Q ss_pred             CCCcccccceEecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 042844          155 KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGK  209 (372)
Q Consensus       155 ~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~  209 (372)
                      +. .....|+++..+++..|++|++|.+|++++.+||+||+||.-..|||++...
T Consensus       803 Dt-~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~  856 (3738)
T KOG1428|consen  803 DT-LSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAG  856 (3738)
T ss_pred             cc-ccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCccc
Confidence            66 6677899999888889999999999999999999999999999999998743

>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS)

Probab=99.27  E-value=9.5e-12  Score=82.14  Aligned_cols=51  Identities=43%  Similarity=0.763  Sum_probs=47.0

Q ss_pred             CCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCCeEEEE
Q 042844          137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ  187 (372)
Q Consensus       137 ~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~l  187 (372)
                      ||+||+||.|.+||||..........|++++.+...+|++|+||.+|++||
T Consensus         1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l   51 (51)
T PF00415_consen    1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL   51 (51)
T ss_dssp             TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred             CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence            699999999999999955566888999999999989999999999999997

The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.

>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS)

Probab=99.24  E-value=5.7e-12  Score=83.23  Aligned_cols=49  Identities=33%  Similarity=0.493  Sum_probs=42.6

Q ss_pred             CCcEEEEeCCCCCccC-CCCCCCCCCCCccceeecCCCCC-CeEEEecCCCceEEE
Q 042844           26 GTAVVSFGDGSQGALG-LPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAV   79 (372)
Q Consensus        26 ~g~vy~wG~n~~gqLG-~~~~~~~~~~~~~~p~~i~~~~~-~i~~I~~G~~h~~~l   79 (372)
                      ||+||+||.|.+|||| .+.     .....+|++++.+.. +|++|+||..|+++|
T Consensus         1 dG~vy~wG~n~~GqLG~~~~-----~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l   51 (51)
T PF00415_consen    1 DGRVYSWGSNDYGQLGSGGD-----NKNVSVPTKVPFLSGVRIVQVACGSDHTLAL   51 (51)
T ss_dssp             TSEEEEEEEETTSTTSSSSS-----SSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred             CCcEEEEECCCCCCCCCCCC-----CCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence            6899999999999999 444     467899999987654 699999999999987

The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.

>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B

Probab=99.17  E-value=3.3e-11  Score=69.39  Aligned_cols=30  Identities=43%  Similarity=0.850  Sum_probs=26.0

Q ss_pred             eEEEecCCCceEEEecCCcEEEEeCCCCCC
Q 042844           66 VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQ   95 (372)
Q Consensus        66 i~~I~~G~~h~~~lt~~G~v~~~G~n~~gq   95 (372)
                      |++|+||..|+++|+++|+||+||.|.+||
T Consensus         1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ   30 (30)
T PF13540_consen    1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ   30 (30)
T ss_dssp             EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred             CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence            789999999999999999999999999987

>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B

Probab=99.16  E-value=4.6e-11  Score=68.79  Aligned_cols=30  Identities=47%  Similarity=0.740  Sum_probs=26.0

Q ss_pred             EEEEEecCCeeEEEecCCCEEEEeCCCCCc
Q 042844          266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQ  295 (372)
Q Consensus       266 i~~I~~G~~h~~alt~~G~vy~wG~n~~gq  295 (372)
                      |++|+||.+|++||+++|+||+||+|.+||
T Consensus         1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ   30 (30)
T PF13540_consen    1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ   30 (30)
T ss_dssp             EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred             CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence            789999999999999999999999999987

>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=9.4e-12  Score=121.50  Aligned_cols=134  Identities=31%  Similarity=0.530  Sum_probs=115.1

Q ss_pred             CeEEEecCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeC-------C
Q 042844           65 DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGD-------D  137 (372)
Q Consensus        65 ~i~~I~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~-------~  137 (372)
                      .|.+++||.+|.++++..|++|.||.|.+||++++...  .... |.+++.+++.+..+|+||..|+++++.       +
T Consensus        15 ~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~--~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e   91 (850)
T KOG0941|consen   15 HILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYF--PDAK-PEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDE   91 (850)
T ss_pred             hhhhhccccHHHHhhhccCCeeeccCCccchhhhhccC--CCCC-CccchhhcCCcHHHHhcCCCcchhhhhchhhcchh
Confidence            69999999999999999999999999999999999333  2333 889999999999999999998888776       9


Q ss_pred             CcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCCeEEEE-eCCCcEEEEeCCCCC
Q 042844          138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQ-TEDGKLFGWGYSADG  202 (372)
Q Consensus       138 g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~l-t~~g~vy~wG~n~~g  202 (372)
                      |.++++|....||+|+... .....|..+..+-+..+..|+||..|++++ ..-|++|.+|.+..|
T Consensus        92 ~~~fs~Ga~~~~q~~h~~~-~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG  156 (850)
T KOG0941|consen   92 GKVFSFGAGSTGQLGHSLT-ENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG  156 (850)
T ss_pred             ccccccCCccccccccccc-ccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence            9999999999999999533 556667777777778999999999888776 556889999988776

>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=6.7e-12  Score=122.49  Aligned_cols=176  Identities=26%  Similarity=0.386  Sum_probs=132.3

Q ss_pred             CceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCCeEEEEeC
Q 042844          110 PKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTE  189 (372)
Q Consensus       110 p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~lt~  189 (372)
                      |..+..+.-.++.++.||.+|+.+++..|++|+||.+.+||+|.+....... |..++.+.+.+..+|+||.+|+++++.
T Consensus         5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS~   83 (850)
T KOG0941|consen    5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAK-PEPVESLKGVPLAQVSAGEAHSFALSS   83 (850)
T ss_pred             hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCC-CccchhhcCCcHHHHhcCCCcchhhhh
Confidence            4445555567899999999999999999999999999999999995545555 999999999999999999999988877


Q ss_pred             -------CCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccccccCCCceeceeeec
Q 042844          190 -------DGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE  262 (372)
Q Consensus       190 -------~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~  262 (372)
                             +|.++.+|....+|+|+.-...+.                                           .|..+.
T Consensus        84 ~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~-------------------------------------------~~~~v~  120 (850)
T KOG0941|consen   84 HTVLLTDEGKVFSFGAGSTGQLGHSLTENEV-------------------------------------------LPLLVL  120 (850)
T ss_pred             chhhcchhccccccCCccccccccccccccc-------------------------------------------ccHHHH
Confidence                   999999999999999984111111                                           122222


Q ss_pred             ---CccEEEEEecCCeeEEEec-CCCEEEEeCCCCC--ccCCCCCC--CcccceeeccccEEEecCCCceEEEEe
Q 042844          263 ---GVEVVDIACGFDHSLVLGR-NGVLLSCGSNVYG--QLGREKQD--MGMFPVDINFHPVSISSGLGHSLAICE  329 (372)
Q Consensus       263 ---~~~i~~I~~G~~h~~alt~-~G~vy~wG~n~~g--qlG~~~~~--~~~~P~~v~~~i~~ia~G~~~s~~l~~  329 (372)
                         ...+.+|+||..|+++.-. -|++|..|.+..|  ++-.....  ....-.++...+..+++|.+.++.+..
T Consensus       121 e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i~s~s~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~  195 (850)
T KOG0941|consen  121 ELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVIVSLSGEDLLRDHDSEKDHRCSLAFAGGDQTFSLSS  195 (850)
T ss_pred             HHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCCceeeccchhhhcccccHHHHHHHHHHhcCCCceEEEEe
Confidence               6778999999999998864 6899999988776  11000000  000111222456778999999998887

>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]

Probab=95.69  E-value=0.86  Score=44.31  Aligned_cols=108  Identities=19%  Similarity=0.216  Sum_probs=68.2

Q ss_pred             cCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecC-cEEEEEeCCCcEE-EEeCCCC
Q 042844           71 AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASG-VVSSAIGDDGSLW-VWGKSKR  148 (372)
Q Consensus        71 ~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~-~~~~~lt~~g~v~-~~G~n~~  148 (372)
                      .|+.-..||.++|++|.       +-|.....+..  ..=+.+.  +..++.+|++|. .-..+++.+|.|| --|-.++
T Consensus       190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~G--raW~~i~--~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRq  258 (705)
T KOG3669|consen  190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCG--RAWKVIC--PYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQ  258 (705)
T ss_pred             CCceEEEEEecCCcEEE-------eccccCCCCCC--ceeeecC--CCCccceEeecCcceEEEEeeCCcEEEEeccccc
Confidence            44555567888888875       22222222110  1111111  112588899998 6688999999976 4566666


Q ss_pred             CCCCCCCCCcccccceEecccCCCcEEEEEecCCeEEEEeCCCcEEEE
Q 042844          149 GQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW  196 (372)
Q Consensus       149 gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~w  196 (372)
                      .+.|..  -....+|....     .++.|+.|.....+||++|++|+=
T Consensus       259 Np~Gds--WkdI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfr  299 (705)
T KOG3669|consen  259 NPEGDS--WKDIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFR  299 (705)
T ss_pred             CCCCch--hhhccCccccc-----ceEEEEeccceEEEEecCCcEEEE
Confidence            666643  22333443332     389999999999999999999864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.59  E-value=1.4  Score=44.38  Aligned_cols=241  Identities=15%  Similarity=0.157  Sum_probs=135.0

Q ss_pred             hhcceeeeee--EEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEe--cCCc
Q 042844            9 HNHVNVLTSR--IFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVT--NNGA   84 (372)
Q Consensus         9 ~~~~~~~~~~--~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt--~~G~   84 (372)
                      -+|.+..+.+  ..+.++..|.-.++|...-|||.+=.=+.    ..+.-.+..++ .++..++-...-.++.|  +||+
T Consensus       299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs----EsYVlKQQgH~-~~i~~l~YSpDgq~iaTG~eDgK  373 (893)
T KOG0291|consen  299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS----ESYVLKQQGHS-DRITSLAYSPDGQLIATGAEDGK  373 (893)
T ss_pred             EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec----cceeeeccccc-cceeeEEECCCCcEEEeccCCCc
Confidence            3566666633  34566677999999999999998865221    12221122222 45666665555444443  6777


Q ss_pred             EEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccce
Q 042844           85 VWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPS  164 (372)
Q Consensus        85 v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~  164 (372)
                      |=.|-....-++-+             .-+....+..+++..-.+..+..+-||.|-.|-..+|-      .......|.
T Consensus       374 VKvWn~~SgfC~vT-------------FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr------NfRTft~P~  434 (893)
T KOG0291|consen  374 VKVWNTQSGFCFVT-------------FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR------NFRTFTSPE  434 (893)
T ss_pred             EEEEeccCceEEEE-------------eccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc------eeeeecCCC
Confidence            77776433222111             11223456777888888888888899999999876542      212223344


Q ss_pred             EecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhc
Q 042844          165 RVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE  244 (372)
Q Consensus       165 ~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (372)
                      +++              ..+++++..|.|.+-|.-..-                                          
T Consensus       435 p~Q--------------fscvavD~sGelV~AG~~d~F------------------------------------------  458 (893)
T KOG0291|consen  435 PIQ--------------FSCVAVDPSGELVCAGAQDSF------------------------------------------  458 (893)
T ss_pred             cee--------------eeEEEEcCCCCEEEeeccceE------------------------------------------
Confidence            433              134677777777776642110                                          


Q ss_pred             ccccccCCCceeceeeecCccEEEEEecCC---eeEEEec----------CCCEEEEeCCCCCccCCCCCCCcccceeec
Q 042844          245 GMEKEKYMPIIWEPFLVEGVEVVDIACGFD---HSLVLGR----------NGVLLSCGSNVYGQLGREKQDMGMFPVDIN  311 (372)
Q Consensus       245 ~~~~~~~~~~~~~p~~i~~~~i~~I~~G~~---h~~alt~----------~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~  311 (372)
                             ..+.|.-+   ..++.+|-.|..   +.+...-          |..|-.|---.        ......|.++.
T Consensus       459 -------~IfvWS~q---TGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~--------s~~~vEtl~i~  520 (893)
T KOG0291|consen  459 -------EIFVWSVQ---TGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS--------SSGTVETLEIR  520 (893)
T ss_pred             -------EEEEEEee---cCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec--------cCceeeeEeec
Confidence                   00011000   112222222221   2222333          33444444211        11223677888


Q ss_pred             cccEEEecC--CCceEEEEeeccccccCCCccEEEecCCCCCCccCC
Q 042844          312 FHPVSISSG--LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRM  356 (372)
Q Consensus       312 ~~i~~ia~G--~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~  356 (372)
                      ..+..|+.-  ..-.++.|-         ||++-.|-.++..|+|.=
T Consensus       521 sdvl~vsfrPdG~elaVaTl---------dgqItf~d~~~~~q~~~I  558 (893)
T KOG0291|consen  521 SDVLAVSFRPDGKELAVATL---------DGQITFFDIKEAVQVGSI  558 (893)
T ss_pred             cceeEEEEcCCCCeEEEEEe---------cceEEEEEhhhceeeccc
Confidence            888888776  666778888         999999999999999553

>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]

Probab=94.36  E-value=0.62  Score=45.26  Aligned_cols=108  Identities=23%  Similarity=0.207  Sum_probs=70.7

Q ss_pred             ecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecC-CeEEEEeCCCcEEE-EeCCCCCC
Q 042844          126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW-GHALAQTEDGKLFG-WGYSADGR  203 (372)
Q Consensus       126 ~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~-~~~~~lt~~g~vy~-wG~n~~gq  203 (372)
                      .|.....||..+|.+|.       +-|..........-..+...  .++.+|++|. ....||+.+|+||. -|....++
T Consensus       190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~i~~~--t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp  260 (705)
T KOG3669|consen  190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKVICPY--TDLSQISAGPTGVVWAVTENGAVFYREGVSRQNP  260 (705)
T ss_pred             CCceEEEEEecCCcEEE-------eccccCCCCCCceeeecCCC--CccceEeecCcceEEEEeeCCcEEEEecccccCC
Confidence            55666778888998886       23333332222222222222  2588999999 88999999999764 67776666


Q ss_pred             CCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccccccCCCceeceeeecCccEEEEEecCCeeEEEecCC
Q 042844          204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNG  283 (372)
Q Consensus       204 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~i~~I~~G~~h~~alt~~G  283 (372)
                      .|..=..                                              .+.+.....++.|+.|....-||+.+|
T Consensus       261 ~GdsWkd----------------------------------------------I~tP~~a~~~v~iSvGt~t~Waldndg  294 (705)
T KOG3669|consen  261 EGDSWKD----------------------------------------------IVTPRQALEPVCISVGTQTLWALDNDG  294 (705)
T ss_pred             CCchhhh----------------------------------------------ccCcccccceEEEEeccceEEEEecCC
Confidence            6654000                                              011111334899999999999999999


Q ss_pred             CEEEE
Q 042844          284 VLLSC  288 (372)
Q Consensus       284 ~vy~w  288 (372)
                      ++|.-
T Consensus       295 ~lwfr  299 (705)
T KOG3669|consen  295 NLWFR  299 (705)
T ss_pred             cEEEE
Confidence            99863

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=94.04  E-value=0.38  Score=52.40  Aligned_cols=67  Identities=13%  Similarity=0.064  Sum_probs=46.3

Q ss_pred             CccEEEEEecCC-eeEEEecCCCEEEEeCCCCCccCCC-CCCCcccceeec--cccEEEecCCCceEEEEe
Q 042844          263 GVEVVDIACGFD-HSLVLGRNGVLLSCGSNVYGQLGRE-KQDMGMFPVDIN--FHPVSISSGLGHSLAICE  329 (372)
Q Consensus       263 ~~~i~~I~~G~~-h~~alt~~G~vy~wG~n~~gqlG~~-~~~~~~~P~~v~--~~i~~ia~G~~~s~~l~~  329 (372)
                      .-+|++|+.-.. .-+|++.+|++|..-.-..-+.-.+ .....+.|+.++  .++..+....+|...+.-
T Consensus       743 ~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~  813 (1774)
T PF11725_consen  743 SGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQI  813 (1774)
T ss_pred             CcchhheeeccccceeEecCCCceeecCHHHhhCcccCCccccCceeccCCCCCchhhhhcCCCCceEEEe
Confidence            578999998876 5568899999997654332222122 123455666655  789999999999888876

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=93.64  E-value=0.0053  Score=63.40  Aligned_cols=134  Identities=19%  Similarity=0.233  Sum_probs=88.1

Q ss_pred             CeEEEecCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCc-eeecCCceeEEEEeecCcEEEEEeCCCcEEEE
Q 042844           65 DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPK-RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW  143 (372)
Q Consensus        65 ~i~~I~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~-~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~  143 (372)
                      +++.|-+-.+.-++|..+|++|.|-+...--+-....... ...-|. .+-.+.+.+|+.+++..--.-++|++|+|.+|
T Consensus       375 ~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~k-n~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasW  453 (3015)
T KOG0943|consen  375 KFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINK-NLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASW  453 (3015)
T ss_pred             eeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhccc-CCCCCccceecccCCeeEEeecCceeeeeeecCCchhhH
Confidence            4667766677779999999999998775433322111111 111222 22345667999999999999999999999999


Q ss_pred             eCCCCCCCCCCCCCccccc-ceEecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCC
Q 042844          144 GKSKRGQLGLGKDITEAIV-PSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRI  204 (372)
Q Consensus       144 G~n~~gqlg~~~~~~~~~~-p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gql  204 (372)
                      =.    .+|.+....-..+ -+.+ ...++.+++..|...|++|...++-+|-||...+.+.
T Consensus       454 lD----EcgagV~fkLa~ea~Tki-eed~~maVqd~~~adhlaAf~~dniihWcGiVPf~es  510 (3015)
T KOG0943|consen  454 LD----ECGAGVAFKLAHEAQTKI-EEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSES  510 (3015)
T ss_pred             Hh----hhhhhhhhhhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehhh
Confidence            43    2232222111111 1122 2445678888899999999999999999998765553

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=92.26  E-value=7.5  Score=34.15  Aligned_cols=70  Identities=11%  Similarity=0.188  Sum_probs=38.7

Q ss_pred             CceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEE--EecCCeEEEEeCCCcEE
Q 042844          117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV--SFGWGHALAQTEDGKLF  194 (372)
Q Consensus       117 ~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I--~~g~~~~~~lt~~g~vy  194 (372)
                      +++..+.+.|-..-.+-=++||.+-.|--..            ..-++.....  ..|..|  .-...+.+.=+.+|+|+
T Consensus        84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~------------~~~qR~~~~~--spVn~vvlhpnQteLis~dqsg~ir  149 (311)
T KOG0315|consen   84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS------------LSCQRNYQHN--SPVNTVVLHPNQTELISGDQSGNIR  149 (311)
T ss_pred             CceEEEEEeecCeEEEecCCCceEEEEeccC------------cccchhccCC--CCcceEEecCCcceEEeecCCCcEE
Confidence            4455555555555455556788888886422            1111111111  223333  33455667778899999


Q ss_pred             EEeCCC
Q 042844          195 GWGYSA  200 (372)
Q Consensus       195 ~wG~n~  200 (372)
                      +|-...
T Consensus       150 vWDl~~  155 (311)
T KOG0315|consen  150 VWDLGE  155 (311)
T ss_pred             EEEccC
Confidence            998643

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.18  E-value=5.8  Score=42.71  Aligned_cols=172  Identities=15%  Similarity=0.125  Sum_probs=88.0

Q ss_pred             EEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEeCCCCCC-CcCC
Q 042844           21 MRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQ-LGRG   99 (372)
Q Consensus        21 ~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~gq-lg~~   99 (372)
                      +=++.|+++|.|=.|+.+++..-+..      ..+-..+.....+.--..--=.|-++|.+-=+|+..|....-. .+..
T Consensus        93 aWiTiDn~L~lWny~~~~e~~~~d~~------shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~  166 (1311)
T KOG1900|consen   93 AWITIDNNLFLWNYESDNELAEYDGL------SHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELS  166 (1311)
T ss_pred             eEEEeCCeEEEEEcCCCCccccccch------hhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccc
Confidence            34679999999999987777665421      1111122111111000111125789999999999988433221 1111


Q ss_pred             CCCCCCccCCCceeecCCceeEEEEeecCcEEEEEe-CCCcEEE----EeCCCCCCC----CCCCCCcccccceEeccc-
Q 042844          100 ALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIG-DDGSLWV----WGKSKRGQL----GLGKDITEAIVPSRVEAL-  169 (372)
Q Consensus       100 ~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt-~~g~v~~----~G~n~~gql----g~~~~~~~~~~p~~i~~~-  169 (372)
                      ...      .-..+ ...+..+.+|.+..+.-++++ .||.||-    .+.+.+++.    -.+........|..+... 
T Consensus       167 ~f~------~~~~i-~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~  239 (1311)
T KOG1900|consen  167 IFN------TSFKI-SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG  239 (1311)
T ss_pred             ccc------cceee-ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence            111      11111 123556666665555444554 5555542    233333331    111122233456633322 


Q ss_pred             -CCCcEEEEEecCCeEE--EEeCCCcEEEEeCCCCCCCC
Q 042844          170 -AGEKIVKVSFGWGHAL--AQTEDGKLFGWGYSADGRIG  205 (372)
Q Consensus       170 -~~~~i~~I~~g~~~~~--~lt~~g~vy~wG~n~~gqlg  205 (372)
                       ..+.|++|+......+  +++++|.|-+|-....|+-+
T Consensus       240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~  278 (1311)
T KOG1900|consen  240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGG  278 (1311)
T ss_pred             CCCCcceeeEeccccceeeeeccCceEEEEEccCCCccc
Confidence             2567999999877654  56777887777655444433

>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=89.02  E-value=0.07  Score=55.66  Aligned_cols=127  Identities=23%  Similarity=0.239  Sum_probs=83.6

Q ss_pred             CceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC-cccccceEe-cccCCCcEEEEEecCCeEEEEeCCCcEE
Q 042844          117 DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDI-TEAIVPSRV-EALAGEKIVKVSFGWGHALAQTEDGKLF  194 (372)
Q Consensus       117 ~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~-~~~~~p~~i-~~~~~~~i~~I~~g~~~~~~lt~~g~vy  194 (372)
                      +..++++|.+-.+..++|..+|++|.|--...--|-..... .+...|... ..+.+++|+.+++..-..-++|++|+|-
T Consensus       372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghla  451 (3015)
T KOG0943|consen  372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLA  451 (3015)
T ss_pred             CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchh
Confidence            34578999888888999999999999975443222211110 111122221 2355789999999999999999999999


Q ss_pred             EEeCC----CCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccccccCCCceeceeeec--CccEEE
Q 042844          195 GWGYS----ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE--GVEVVD  268 (372)
Q Consensus       195 ~wG~n----~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~--~~~i~~  268 (372)
                      .|=.-    ....|-..                                                 .-+.++  ...+++
T Consensus       452 sWlDEcgagV~fkLa~e-------------------------------------------------a~Tkieed~~maVq  482 (3015)
T KOG0943|consen  452 SWLDECGAGVAFKLAHE-------------------------------------------------AQTKIEEDGEMAVQ  482 (3015)
T ss_pred             hHHhhhhhhhhhhhhhh-------------------------------------------------hhhhhhhhhHHHHH
Confidence            99542    11111100                                                 011111  456777


Q ss_pred             EEecCCeeEEEecCCCEEEEeCCC
Q 042844          269 IACGFDHSLVLGRNGVLLSCGSNV  292 (372)
Q Consensus       269 I~~G~~h~~alt~~G~vy~wG~n~  292 (372)
                      ..|...|.+|..+|.-+|-||--.
T Consensus       483 d~~~adhlaAf~~dniihWcGiVP  506 (3015)
T KOG0943|consen  483 DHCCADHLAAFLEDNIIHWCGIVP  506 (3015)
T ss_pred             HHHHHHHHHHHhhhceeeEEeeee
Confidence            788888999999999999999443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=85.26  E-value=37  Score=32.69  Aligned_cols=70  Identities=9%  Similarity=0.113  Sum_probs=40.3

Q ss_pred             CCeEEEecCC-CceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceee--cCCceeEEEEeecCcEEEEEeCCCcE
Q 042844           64 SDVTSVSAGH-YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVE--GLDQVNVCAAFASGVVSSAIGDDGSL  140 (372)
Q Consensus        64 ~~i~~I~~G~-~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~--~~~~~~i~~i~~g~~~~~~lt~~g~v  140 (372)
                      .+|+.+.--. .+-++|.+||.++...  -+|..   .      ...+..+.  .....++-.+..+..-.++|+.++++
T Consensus        81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~---~------fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~  149 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF---Q------FSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRF  149 (410)
T ss_pred             CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce---e------echhhhccccCcccccccccccCCCCEEEECCCCeE
Confidence            4677766544 5668899999888763  22222   0      01111111  11122333445566678999999999


Q ss_pred             EEEe
Q 042844          141 WVWG  144 (372)
Q Consensus       141 ~~~G  144 (372)
                      |..=
T Consensus       150 ~~v~  153 (410)
T PF04841_consen  150 YVVN  153 (410)
T ss_pred             EEEe
Confidence            9873

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=83.26  E-value=6.4  Score=34.27  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=27.6

Q ss_pred             CCCCeEEEecCCCceEEEecCCcEEEEeCCCC
Q 042844           62 LPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNE   93 (372)
Q Consensus        62 ~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~   93 (372)
                      ++.++..+.|-+++-++||++|.+|.|-....
T Consensus        11 Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~   42 (219)
T PF07569_consen   11 LGSPVSFLECNGSYLLAITSSGLLYVWNLKKG   42 (219)
T ss_pred             cCCceEEEEeCCCEEEEEeCCCeEEEEECCCC
Confidence            44688899999999999999999999986543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=82.04  E-value=7.9  Score=33.68  Aligned_cols=35  Identities=23%  Similarity=0.289  Sum_probs=29.0

Q ss_pred             eeeecCccEEEEEecCCeeEEEecCCCEEEEeCCC
Q 042844          258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNV  292 (372)
Q Consensus       258 p~~i~~~~i~~I~~G~~h~~alt~~G~vy~wG~n~  292 (372)
                      |..+-..+++.+.|-..+.+|+|++|.+|+|--..
T Consensus         7 P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~   41 (219)
T PF07569_consen    7 PPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKK   41 (219)
T ss_pred             CcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence            44444778899999999999999999999998554

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins

Probab=81.25  E-value=3.9  Score=23.83  Aligned_cols=25  Identities=28%  Similarity=0.449  Sum_probs=22.3

Q ss_pred             CcEEEEEecC-CeEEEEeCCCcEEEE
Q 042844          172 EKIVKVSFGW-GHALAQTEDGKLFGW  196 (372)
Q Consensus       172 ~~i~~I~~g~-~~~~~lt~~g~vy~w  196 (372)
                      .++++|++|. +...+++.+|+||..
T Consensus         8 g~l~~isvg~~~~vW~V~~~g~i~~r   33 (35)
T smart00706        8 GELVQVSVGPSDTVWAVNSDGNIYRR   33 (35)
T ss_pred             CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence            4689999999 999999999999963

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	372
4dnv_A	370	Crystal Structure Of The W285f Mutant Of Uvb-Resist		4e-24
4dnw_A	374	Crystal Structure Of Uvb-Resistance Protein Uvr8 Le		2e-23
4d9s_A	406	Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv		2e-23
4dnu_A	372	Crystal Structure Of The W285a Mutant Of Uvb-Resist		1e-22
3kci_A	389	The Third Rld Domain Of Herc2 Length = 389		2e-16
1i2m_B	402	Ran-Rcc1-So4 Complex Length = 402		7e-12
1a12_A	413	Regulator Of Chromosome Condensation (Rcc1) Of Huma		9e-12
3of7_A	473	The Crystal Structure Of Prp20p From Saccharomyces		1e-10
3mvd_K	423	Crystal Structure Of The Chromatin Factor Rcc1 In C		6e-09
3mvd_K	423	Crystal Structure Of The Chromatin Factor Rcc1 In C		8e-06

>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 152/353 (43%), Gaps = 65/353 (18%)
Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           S SG  V S+G G  G LG      G   D + P  +  L    +  ++ G  H LAVT 
Sbjct: 72  SQSGMEVYSWGWGDFGRLG-----HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            G V +WGRN   QLG G  E       P++++  + + +    A    ++A+ +DG L+
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLY 183
Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G LGLG D T+ +VP RV +  GEK+  V+ GW H ++ +  G L+ +G+S  
Sbjct: 184 GWGWGRYGNLGLG-DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 242
Query: 202 GRIGNLGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G+                                      G  ++  +P   E   +
Sbjct: 243 GQLGH--------------------------------------GDLEDHLIPHKLEA--L 262
Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSI 317
               +  I+ GF H++ L  +G L   G N +GQ+G         PV + F      V +
Sbjct: 263 SNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV 322
Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           S G  H+LA+ E  +         + +WG   + QL  G     N P ++E L
Sbjct: 323 SCGWRHTLAVTERNN---------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 366

>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 152/353 (43%), Gaps = 65/353 (18%)
Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           S SG  V S+G G  G LG      G   D + P  +  L    +  ++ G  H LAVT 
Sbjct: 72  SQSGMEVYSWGWGDFGRLG-----HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            G V +WGRN   QLG G  E       P++++  + + +    A    ++A+ +DG L+
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLY 183
Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G LGLG D T+ +VP RV +  GEK+  V+ GW H ++ +  G L+ +G+S  
Sbjct: 184 GWGWGRYGNLGLG-DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 242
Query: 202 GRIGNLGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G+                                      G  ++  +P   E   +
Sbjct: 243 GQLGH--------------------------------------GDLEDHLIPHKLEA--L 262
Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSI 317
               +  I+ G+ H++ L  +G L   G N +GQ+G         PV + F      V +
Sbjct: 263 SNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV 322
Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           S G  H+LA+ E  +         + +WG   + QL  G     N P ++E L
Sbjct: 323 SCGWRHTLAVTERNN---------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 366

>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 152/353 (43%), Gaps = 65/353 (18%)
Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           S SG  V S+G G  G LG      G   D + P  +  L    +  ++ G  H LAVT 
Sbjct: 84  SQSGMEVYSWGWGDFGRLG-----HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 138
Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            G V +WGRN   QLG G  E       P++++  + + +    A    ++A+ +DG L+
Sbjct: 139 EGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLY 195
Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G LGLG D T+ +VP RV +  GEK+  V+ GW H ++ +  G L+ +G+S  
Sbjct: 196 GWGWGRYGNLGLG-DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 254
Query: 202 GRIGNLGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G+                                      G  ++  +P   E   +
Sbjct: 255 GQLGH--------------------------------------GDLEDHLIPHKLEA--L 274
Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSI 317
               +  I+ G+ H++ L  +G L   G N +GQ+G         PV + F      V +
Sbjct: 275 SNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV 334
Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           S G  H+LA+ E  +         + +WG   + QL  G     N P ++E L
Sbjct: 335 SCGWRHTLAVTERNN---------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 378

>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 149/353 (42%), Gaps = 65/353 (18%)
Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           S SG  V S+G G  G LG      G   D + P  +  L    +  ++ G  H LAVT 
Sbjct: 74  SQSGXEVYSWGWGDFGRLG-----HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTX 128
Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            G V +WGRN   QLG G  E       P++++  + + +    A    ++A+ +DG L+
Sbjct: 129 EGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLY 185
Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G LGLG D T+ +VP RV +  GEK   V+ GW H ++ +  G L+ +G+S  
Sbjct: 186 GWGWGRYGNLGLG-DRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKY 244
Query: 202 GRIGNLGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G+                                      G  ++  +P   E   +
Sbjct: 245 GQLGH--------------------------------------GDLEDHLIPHKLEA--L 264
Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSI 317
               +  I+ G  H+  L  +G L   G N +GQ+G         PV + F      V +
Sbjct: 265 SNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV 324
Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQL--GRMGPDNVPLVVEGL 368
           S G  H+LA+ E  +         + +WG   + QL  G     N P ++E L
Sbjct: 325 SCGWRHTLAVTERNN---------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 368

>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 137/312 (43%), Gaps = 61/312 (19%)
Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS 127
           +V++G  H LA+++ G V++WG   + +LG G   +R+  + P+ +E L  + V    A 
Sbjct: 111 AVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG---NRSPCDRPRVIESLRGIEVVDVAAG 167
Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA--L 185
           G  S+ +   G L+ WGK + G+LG   D  + + P  VEAL G ++V ++ G G A  L
Sbjct: 168 GAHSACVTAAGDLYTWGKGRYGRLGH-SDSEDQLKPKLVEALQGHRVVDIACGSGDAQTL 226
Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQKLVSEG 245
             T+D  ++ WG   DG  G LG+                                 S+G
Sbjct: 227 CLTDDDTVWSWG---DGDYGKLGRG-------------------------------GSDG 252
Query: 246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGM 305
            +    +P+  +     G+ VV + CG   S+ L ++G + + G   Y +LG    D   
Sbjct: 253 CK----VPMKIDSLT--GLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVR 306
Query: 306 FPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNV 361
            P  +        ++I++G  H +   E            + +WG N   QLG    + +
Sbjct: 307 RPRQVQGLQGKKVIAIATGSLHCVCCTEDGE---------VYTWGDNDEGQLGDGTTNAI 357
Query: 362 --PLVVEGLEGE 371
             P +V  L+G+
Sbjct: 358 QRPRLVAALQGK 369

>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 96/181 (53%), Gaps = 12/181 (6%)
Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V++ G G  G LGL  ++     +  +P  V  +P DV    AG  H++ ++ +G V+++
Sbjct: 18  VLTLGQGDVGQLGLGENVM----ERKKPALVS-IPEDVVQAEAGGMHTVCLSKSGQVYSF 72
Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG--KS 146
           G N+E  LGR       +   P +VE  ++V   +A  S   ++A+ DDG +++WG  + 
Sbjct: 73  GCNDEGALGRDT-SVEGSEMVPGKVELQEKVVQVSAGDSH--TAALTDDGRVFLWGSFRD 129
Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             G +GL + + +++VP +V+      +VKV+ G  H +  T DG L+  G    G++G 
Sbjct: 130 NNGVIGLLEPMKKSMVPVQVQLDV--PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGR 187
Query: 207 L 207
           +
Sbjct: 188 V 188

>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 96/181 (53%), Gaps = 12/181 (6%)
Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V++ G G  G LGL  ++     +  +P  V  +P DV    AG  H++ ++ +G V+++
Sbjct: 29  VLTLGQGDVGQLGLGENVM----ERKKPALV-SIPEDVVQAEAGGMHTVCLSKSGQVYSF 83
Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG--KS 146
           G N+E  LGR       +   P +VE  ++V   +A  S   ++A+ DDG +++WG  + 
Sbjct: 84  GCNDEGALGRDT-SVEGSEMVPGKVELQEKVVQVSAGDSH--TAALTDDGRVFLWGSFRD 140
Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
             G +GL + + +++VP +V+      +VKV+ G  H +  T DG L+  G    G++G 
Sbjct: 141 NNGVIGLLEPMKKSMVPVQVQLDV--PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGR 198
Query: 207 L 207
           +
Sbjct: 199 V 199

>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 152/400 (38%), Gaps = 87/400 (21%)
Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSD---VTSVSAGHYHSLAVTNNGAV 85
           +  +G GS   LGL         +   P   P LP D   + S + G  H+LA+     V
Sbjct: 31  IFCWGTGSMCELGL--GPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNV 88
Query: 86  WAWGRNNEVQLGRGALESRATWND-----------------------------PKRVEGL 116
           W+WG N+   LGR    ++    D                             P   EG 
Sbjct: 89  WSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGH 148
Query: 117 DQVNVCAAFASGVVSSAIGDDGSLWVWG--KSKRGQLGLGKD-ITEAIVPSRVEALAGEK 173
             V +    A+  +S A+  +G ++ WG  +   G LG  +D I     P +V   +   
Sbjct: 149 KVVQLA---ATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYN 205
Query: 174 IVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN------LGKALESSPLDSNXXXXXXXX 227
           IV+++ G  H L   E+G +F WG     ++G         K L+  P            
Sbjct: 206 IVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLR-HVKYIAS 264
Query: 228 XXXXXXXXXKAQKLVSEGM---------EKEKYMPIIWEP---FLVEGVEVVDIACGFDH 275
                    K  KLVS G+         E  +   ++ +P    L + V +  IA G  H
Sbjct: 265 GENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHH 324
Query: 276 SLVLGRNGVLLSCGSNVYGQLGREKQDMGMF--------------PVDINFHP--VSISS 319
           SL+L ++G L SCG     ++G  K ++  +              P  +N  P   S+++
Sbjct: 325 SLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAA 384
Query: 320 GLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGP 358
           G  HS+A+ +           GI  SWG+  +  +G +GP
Sbjct: 385 GSHHSVAVAQ----------NGIAYSWGFGETYAVG-LGP 413

>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 19/184 (10%)
Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTR---VPGLPSDVTSVSAGHYHSLAVTNNGAV 85
           V+  G+G  G LGL       G D  E  R   V G+P D   +SAG  H+L +T +G +
Sbjct: 45  VLVCGNGDVGQLGL-------GEDILERKRLSPVAGIP-DAVDISAGGMHNLVLTKSGDI 96
Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWG- 144
           +++G N+E  LGR   E   + + P  ++ L    +C + A    S+ + +DG ++ WG 
Sbjct: 97  YSFGCNDEGALGRDTSED-GSESKPDLID-LPGKALCIS-AGDSHSACLLEDGRVFAWGS 153
Query: 145 -KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
            +   G +GL  D  +    + ++ + G     ++ G  H +  T  GK+F  G +  G+
Sbjct: 154 FRDSHGNMGLTIDGNKR---TPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQ 210
Query: 204 IGNL 207
           +G L
Sbjct: 211 LGRL 214

>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 74/178 (41%), Gaps = 24/178 (13%)
Query: 138 GSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG-EKIVKVSFGWGHALAQTEDGKLFGW 196
           G++ V G    GQLGLG+DI E     R+  +AG    V +S G  H L  T+ G ++ +
Sbjct: 43  GNVLVCGNGDVGQLGLGEDILER---KRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSF 99
Query: 197 GYSADGRIGN----------------LGKALESSPLDSNXXXXXXXXXXXXXXXXXKAQK 240
           G + +G +G                  GKAL  S  DS+                  +  
Sbjct: 100 GCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHG 159
Query: 241 LVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR 298
            +   ++  K  PI     L+EG     IA G DH ++L   G + + G    GQLGR
Sbjct: 160 NMGLTIDGNKRTPI----DLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGR 213

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	372
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	6e-65
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	3e-51
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	2e-49
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	4e-48
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	2e-41
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	4e-29
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	4e-17
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	5e-64
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	1e-59
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	2e-57
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	9e-57
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	7e-44
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	1e-35
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	4e-62
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	4e-60
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	1e-58
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	4e-51
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	5e-13
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	4e-06
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	5e-54
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	2e-49
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	9e-48
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	2e-43
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	4e-38
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	2e-34
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	7e-21
3of7_A	473	Regulator of chromosome condensation; beta-propell	3e-53
3of7_A	473	Regulator of chromosome condensation; beta-propell	3e-49
3of7_A	473	Regulator of chromosome condensation; beta-propell	2e-48
3of7_A	473	Regulator of chromosome condensation; beta-propell	5e-46
3of7_A	473	Regulator of chromosome condensation; beta-propell	2e-40
3of7_A	473	Regulator of chromosome condensation; beta-propell	2e-30
3of7_A	473	Regulator of chromosome condensation; beta-propell	6e-17
3of7_A	473	Regulator of chromosome condensation; beta-propell	1e-15
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	7e-32
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	7e-18
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	2e-17
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	6e-16
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	5e-04

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score =  211 bits (538), Expect = 6e-65
 Identities = 83/377 (22%), Positives = 143/377 (37%), Gaps = 62/377 (16%)

Query: 5   KSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS 64
           K V  +H +  T         G  V++ G G  G LGL  ++     +  +P  V  +P 
Sbjct: 13  KKVKVSHRSHSTE-------PGL-VLTLGQGDVGQLGLGENVM----ERKKPALVS-IPE 59

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
           DV    AG  H++ ++ +G V+++G N+E  LGR      +        +   Q  V   
Sbjct: 60  DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSE---MVPGKVELQEKVVQV 116

Query: 125 FASGVVSSAIGDDGSLWVWG--KSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG 182
            A    ++A+ DDG +++WG  +   G +GL + + +++VP +V+      +VKV+ G  
Sbjct: 117 SAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQL--DVPVVKVASGND 174

Query: 183 HALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLV 242
           H +  T DG L+  G    G++G              +  +    Q +    + K   L 
Sbjct: 175 HLVMLTADGDLYTLGCGEQGQLG----------RVPELFANRGGRQGLERLLVPKCVMLK 224

Query: 243 SEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD 302
           S G                  V   D  CG   +  +   G +   G + Y QLG    +
Sbjct: 225 SRG--------------SRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTE 270

Query: 303 MGMFPVDINFHP------VSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR- 355
               P ++          V  S G  H++ +         G A    S G     +LG  
Sbjct: 271 SCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDS------EGKAY---SLGRAEYGRLGLG 321

Query: 356 --MGPDNVPLVVEGLEG 370
                 ++P ++  L  
Sbjct: 322 EGAEEKSIPTLISRLPA 338

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score =  175 bits (445), Expect = 3e-51
 Identities = 78/348 (22%), Positives = 123/348 (35%), Gaps = 79/348 (22%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V SFG   +GALG  TS+ G       P +V      V  VSAG  H+ A+T++G V+ W
Sbjct: 80  VYSFGCNDEGALGRDTSVEG---SEMVPGKVELQ-EKVVQVSAGDSHTAALTDDGRVFLW 135

Query: 89  G--RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGK 145
           G  R+N   +G      ++    P +V+    V      ASG      +  DG L+  G 
Sbjct: 136 GSFRDNNGVIGLLEPMKKSM--VPVQVQLDVPV---VKVASGNDHLVMLTADGDLYTLGC 190

Query: 146 SKRGQLGLGKDITEA----------IVPSRVEA-----LAGEKIVKVSFGWGHALAQTED 190
            ++GQLG   ++             +VP  V           +      G     A + +
Sbjct: 191 GEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHE 250

Query: 191 GKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK 250
           G ++G+G S   ++G                                          +  
Sbjct: 251 GHVYGFGLSNYHQLGT--------------------------------------PGTESC 272

Query: 251 YMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMGMFPVD 309
           ++P     F       V  + G  H++ +   G   S G   YG+LG  E  +    P  
Sbjct: 273 FIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTL 332

Query: 310 INFHP--VSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLG 354
           I+  P   S++ G     A+ +           G V +WG   + QLG
Sbjct: 333 ISRLPAVSSVACGASVGYAVTK----------DGRVFAWGMGTNYQLG 370

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score =  170 bits (433), Expect = 2e-49
 Identities = 66/331 (19%), Positives = 115/331 (34%), Gaps = 73/331 (22%)

Query: 23  SASGTAVVSFGDG--SQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVT 80
           +  G  V  +G    + G +GL   +      +  P +V      V  V++G+ H + +T
Sbjct: 127 TDDGR-VFLWGSFRDNNGVIGLLEPMK----KSMVPVQVQLD-VPVVKVASGNDHLVMLT 180

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWND--------PKRVE-----GLDQVNVCAAFAS 127
            +G ++  G   + QLGR                   PK V          V    AF  
Sbjct: 181 ADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCG 240

Query: 128 GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL--AGEKIVKVSFGWGHAL 185
              + AI  +G ++ +G S   QLG         +P  + +   + +  V  S G  H +
Sbjct: 241 AYFTFAISHEGHVYGFGLSNYHQLGTP-GTESCFIPQNLTSFKNSTKSWVGFSGGQHHTV 299

Query: 186 AQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG 245
               +GK +  G +  GR+G    A E S                               
Sbjct: 300 CMDSEGKAYSLGRAEYGRLGLGEGAEEKS------------------------------- 328

Query: 246 MEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
                       P L+  +  V  +ACG      + ++G + + G     QLG  + +  
Sbjct: 329 -----------IPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDA 377

Query: 305 MFPVDI------NFHPVSISSGLGHSLAICE 329
             PV++      N   +S+SSG  H++ + +
Sbjct: 378 WSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 408

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score =  167 bits (424), Expect = 4e-48
 Identities = 71/336 (21%), Positives = 108/336 (32%), Gaps = 77/336 (22%)

Query: 58  RVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLD 117
           R P   +   S      H    T  G V   G+ +  QLG G          P  V   +
Sbjct: 2   RSPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERK--KPALVSIPE 59

Query: 118 QVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV 177
             +V  A A G+ +  +   G ++ +G +  G LG      E       +    EK+V+V
Sbjct: 60  --DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRD-TSVEGSEMVPGKVELQEKVVQV 116

Query: 178 SFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEK 237
           S G  H  A T+DG++F WG   D   G +G       L   + +S              
Sbjct: 117 SAGDSHTAALTDDGRVFLWGSFRDNN-GVIG-------LLEPMKKS-------------- 154

Query: 238 AQKLVSEGMEKEKYMPIIWEPFLVE-GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
                               P  V+  V VV +A G DH ++L  +G L + G    GQL
Sbjct: 155 ------------------MVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQL 196

Query: 297 GREKQDMGMFPVDINFHP--------------------VSISSGLGHSLAICEVRSSNVT 336
           GR  +                                      G   + AI         
Sbjct: 197 GRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISH------E 250

Query: 337 GGARGIVSWGWNRSSQLGRMGPDN--VPLVVEGLEG 370
           G    +  +G +   QLG  G ++  +P  +   + 
Sbjct: 251 G---HVYGFGLSNYHQLGTPGTESCFIPQNLTSFKN 283

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score =  149 bits (378), Expect = 2e-41
 Identities = 56/289 (19%), Positives = 108/289 (37%), Gaps = 65/289 (22%)

Query: 9   HNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGG------DAYEPTRVPGL 62
           ++H+ +LT+        G  + + G G QG LG    L    G          P  V   
Sbjct: 173 NDHLVMLTA-------DGD-LYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLK 224

Query: 63  PS------DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGL 116
                          G Y + A+++ G V+ +G +N  QLG    ES      P+ +   
Sbjct: 225 SRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFI---PQNLTSF 281

Query: 117 -DQVNVCAAFASGVV-SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI 174
            +       F+ G   +  +  +G  +  G+++ G+LGLG+   E  +P+ +  L    +
Sbjct: 282 KNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA--V 339

Query: 175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST 234
             V+ G     A T+DG++F WG   + ++G                             
Sbjct: 340 SSVACGASVGYAVTKDGRVFAWGMGTNYQLGT---------------------------- 371

Query: 235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNG 283
                     G +++ + P+      +E   V+ ++ G  H+++L ++ 
Sbjct: 372 ----------GQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDK 410

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score =  115 bits (291), Expect = 4e-29
 Identities = 47/250 (18%), Positives = 88/250 (35%), Gaps = 58/250 (23%)

Query: 112 RVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG 171
           R          +        S   + G +   G+   GQLGLG+++ E   P+ V     
Sbjct: 1   RRSPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP-- 58

Query: 172 EKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS 231
           E +V+   G  H +  ++ G+++ +G + +G +G           D++++ S     ++ 
Sbjct: 59  EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGR----------DTSVEGSEMVPGKVE 108

Query: 232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGS- 290
                                            +VV ++ G  H+  L  +G +   GS 
Sbjct: 109 LQE------------------------------KVVQVSAGDSHTAALTDDGRVFLWGSF 138

Query: 291 -NVYGQLG-REKQDMGMFPVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIV-SW 345
            +  G +G  E     M PV +      V ++SG  H + +             G + + 
Sbjct: 139 RDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTA----------DGDLYTL 188

Query: 346 GWNRSSQLGR 355
           G     QLGR
Sbjct: 189 GCGEQGQLGR 198

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score = 81.2 bits (201), Expect = 4e-17
 Identities = 44/217 (20%), Positives = 65/217 (29%), Gaps = 63/217 (29%)

Query: 165 RVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS 224
           R    A            H    TE G +   G    G++G     +E            
Sbjct: 1   RRSPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKK--------- 51

Query: 225 ESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVE-VVDIACGFDHSLVLGRNG 283
                                            P LV   E VV    G  H++ L ++G
Sbjct: 52  ---------------------------------PALVSIPEDVVQAEAGGMHTVCLSKSG 78

Query: 284 VLLSCGSNVYGQLGREKQDMGMFP----VDINFHPVSISSGLGHSLAICEVRSSNVTGGA 339
            + S G N  G LGR+    G       V++    V +S+G  H+ A+ +          
Sbjct: 79  QVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTD---------- 128

Query: 340 RGIV-SWGWNRSS--QLG---RMGPDNVPLVVEGLEG 370
            G V  WG  R +   +G    M    VP+ V+    
Sbjct: 129 DGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVP 165

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score =  208 bits (532), Expect = 5e-64
 Identities = 95/354 (26%), Positives = 148/354 (41%), Gaps = 67/354 (18%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           S SG  V S+G G  G LG   S      D + P  +  L    +  ++ G  H LAVT 
Sbjct: 84  SQSGMEVYSWGWGDFGRLGHGNS-----SDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 138

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
            G V +WGRN   QLG G  E       P++++  + + +    A    ++A+ +DG L+
Sbjct: 139 EGEVQSWGRNQNGQLGLGDTEDSLV---PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLY 195

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG  + G LGLG D T+ +VP RV +  GEK+  V+ GW H ++ +  G L+ +G+S  
Sbjct: 196 GWGWGRYGNLGLG-DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 254

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G+        P                          +                  +
Sbjct: 255 GQLGHGDLEDHLIP------------------------HKLEA----------------L 274

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF----HPVSI 317
               +  I+ G+ H++ L  +G L   G N +GQ+G         PV + F      V +
Sbjct: 275 SNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV 334

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDN--VPLVVEGL 368
           S G  H+LA+ E          R  V +WG   + QLG     +   P ++E L
Sbjct: 335 SCGWRHTLAVTE----------RNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 378

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score =  197 bits (502), Expect = 1e-59
 Identities = 91/355 (25%), Positives = 147/355 (41%), Gaps = 72/355 (20%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGA-VW 86
           V S+G G  G LG      G   D   PT++  L    + SV+ G  H++A + +G  V+
Sbjct: 37  VCSWGRGEDGQLGH-----GDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVY 91

Query: 87  AWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKS 146
           +WG  +  +LG G      T   P  ++ L  + +           A+  +G +  WG++
Sbjct: 92  SWGWGDFGRLGHGNSSDLFT---PLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRN 148

Query: 147 KRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGN 206
           + GQLGLG D  +++VP +++A  G +I  V+ G  H  A TEDG L+GWG+   G +G 
Sbjct: 149 QNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLG- 206

Query: 207 LGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE---G 263
                    L    DR                                   P  V    G
Sbjct: 207 ---------LGDRTDRLV---------------------------------PERVTSTGG 224

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISS 319
            ++  +ACG+ H++ +  +G L + G + YGQLG    +  + P  +    N     IS 
Sbjct: 225 EKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG 284

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPLVVEGLEGES 372
           G  H++A+         G    +  WGWN+  Q+G         P+ V   + + 
Sbjct: 285 GWRHTMALTS------DG---KLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQK 330

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score =  191 bits (487), Expect = 2e-57
 Identities = 79/308 (25%), Positives = 126/308 (40%), Gaps = 51/308 (16%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           +  G  V S+G    G LGL     G   D+  P ++       +  V+AG  H+ AVT 
Sbjct: 137 TMEGE-VQSWGRNQNGQLGL-----GDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE 190

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
           +G ++ WG      LG G    R     P+RV       +         + ++   G+L+
Sbjct: 191 DGDLYGWGWGRYGNLGLGDRTDRLV---PERVTSTGGEKMSMVACGWRHTISVSYSGALY 247

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            +G SK GQLG G D+ + ++P ++EAL+   I ++S GW H +A T DGKL+GWG++  
Sbjct: 248 TYGWSKYGQLGHG-DLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKF 306

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G      + SP                          V                   
Sbjct: 307 GQVGVGNNLDQCSP------------------------VQVRFPD--------------- 327

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGL 321
              +VV ++CG+ H+L +     + + G    GQLG  +     FP  I    V  +SG 
Sbjct: 328 -DQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQ 386

Query: 322 GHSLAICE 329
               +  +
Sbjct: 387 HIESSNID 394

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score =  189 bits (483), Expect = 9e-57
 Identities = 71/331 (21%), Positives = 130/331 (39%), Gaps = 61/331 (18%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G+  D          P  V  +SAG  HS+A+ +   V +WGR  + QLG G  E R + 
Sbjct: 1   GMAEDMAADEVT-APPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPS- 58

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDG-SLWVWGKSKRGQLGLGKDITEAIVPSRV 166
             P ++  LD   + +       + A    G  ++ WG    G+LG G + ++   P  +
Sbjct: 59  --PTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHG-NSSDLFTPLPI 115

Query: 167 EALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSES 226
           +AL G +I +++ G  H LA T +G++  WG + +G++G         P           
Sbjct: 116 KALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVP----------- 164

Query: 227 DQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLL 286
                        + +                   EG+ +  +A G +H+  +  +G L 
Sbjct: 165 -------------QKIQ----------------AFEGIRIKMVAAGAEHTAAVTEDGDLY 195

Query: 287 SCGSNVYGQLGREKQDMGMFPVDINFHP----VSISSGLGHSLAICEVRSSNVTGGARGI 342
             G   YG LG   +   + P  +          ++ G  H++++        +G    +
Sbjct: 196 GWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSY------SG---AL 246

Query: 343 VSWGWNRSSQLGR--MGPDNVPLVVEGLEGE 371
            ++GW++  QLG   +    +P  +E L   
Sbjct: 247 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNS 277

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score =  155 bits (394), Expect = 7e-44
 Identities = 66/270 (24%), Positives = 104/270 (38%), Gaps = 55/270 (20%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTN 81
           +  G  +  +G G  G LGL     G   D   P RV       ++ V+ G  H+++V+ 
Sbjct: 189 TEDGD-LYGWGWGRYGNLGL-----GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSY 242

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
           +GA++ +G +   QLG G LE       P ++E L    +         + A+  DG L+
Sbjct: 243 SGALYTYGWSKYGQLGHGDLEDHLI---PHKLEALSNSFISQISGGWRHTMALTSDGKLY 299

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG +K GQ+G+G +  +   P +V     +K+V+VS GW H LA TE   +F WG   +
Sbjct: 300 GWGWNKFGQVGVG-NNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 358

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
           G++G                     D+                             P ++
Sbjct: 359 GQLGI----------------GESVDR---------------------------NFPKII 375

Query: 262 EGVEVVDIACGFDHSLVLGRNGVLLSCGSN 291
           E +  VD A G              S  S 
Sbjct: 376 EAL-SVDGASGQHIESSNIDPSSGKSWVSP 404

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score =  133 bits (337), Expect = 1e-35
 Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 15/180 (8%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTN 81
           S SG  + ++G    G LG          D   P ++  L  S ++ +S G  H++A+T+
Sbjct: 241 SYSGA-LYTYGWSKYGQLGHGDL-----EDHLIPHKLEALSNSFISQISGGWRHTMALTS 294

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLW 141
           +G ++ WG N   Q+G G    + +   P +V   D   V         + A+ +  +++
Sbjct: 295 DGKLYGWGWNKFGQVGVGNNLDQCS---PVQVRFPDDQKVVQVSCGWRHTLAVTERNNVF 351

Query: 142 VWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            WG+   GQLG+G +  +   P  +EAL+    V  + G     +  +      W   A+
Sbjct: 352 AWGRGTNGQLGIG-ESVDRNFPKIIEALS----VDGASGQHIESSNIDPSSGKSWVSPAE 406

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score =  203 bits (518), Expect = 4e-62
 Identities = 88/360 (24%), Positives = 145/360 (40%), Gaps = 72/360 (20%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS---DVTSVSAGHYHSLAV 79
           +A G  + + G G+ G LG+  +          PT +  +        +V++G  H LA+
Sbjct: 69  TADGK-LYATGYGAGGRLGIGGT-----ESVSTPTLLESIQHVFIKKVAVNSGGKHCLAL 122

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
           ++ G V++WG   + +LG G          P+ +E L  + V    A G  S+ +   G 
Sbjct: 123 SSEGEVYSWGEAEDGKLGHGNRSPCDR---PRVIESLRGIEVVDVAAGGAHSACVTAAGD 179

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWG--HALAQTEDGKLFGWG 197
           L+ WGK + G+LG   D  + + P  VEAL G ++V ++ G G    L  T+D  ++ WG
Sbjct: 180 LYTWGKGRYGRLGHS-DSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWG 238

Query: 198 YSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWE 257
               G++G  G      P             +I S T                       
Sbjct: 239 DGDYGKLGRGGSDGCKVP------------MKIDSLT----------------------- 263

Query: 258 PFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFH 313
                G+ VV + CG   S+ L ++G + + G   Y +LG    D    P  +       
Sbjct: 264 -----GLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKK 318

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV--PLVVEGLEG 370
            ++I++G  H +   E           G V +WG N   QLG    + +  P +V  L+G
Sbjct: 319 VIAIATGSLHCVCCTE----------DGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQG 368

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score =  197 bits (504), Expect = 4e-60
 Identities = 89/360 (24%), Positives = 142/360 (39%), Gaps = 70/360 (19%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
             SGT +  +G   +G LG        G     PT    L +     +  G     AVT 
Sbjct: 17  QGSGT-IYGWGHNHRGQLGG-----IEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTA 70

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNV-CAAFASGVVSS-AIGDDGS 139
           +G ++A G     +LG G  ES +T   P  +E +  V +   A  SG     A+  +G 
Sbjct: 71  DGKLYATGYGAGGRLGIGGTESVST---PTLLESIQHVFIKKVAVNSGGKHCLALSSEGE 127

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           ++ WG+++ G+LG G + +    P  +E+L G ++V V+ G  H+   T  G L+ WG  
Sbjct: 128 VYSWGEAEDGKLGHG-NRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKG 186

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
             GR+G+     +  P            + + +                           
Sbjct: 187 RYGRLGHSDSEDQLKP------------KLVEA--------------------------- 207

Query: 260 LVEGVEVVDIAC--GFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFH 313
            ++G  VVDIAC  G   +L L  +  + S G   YG+LGR   D    P+ I       
Sbjct: 208 -LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLG 266

Query: 314 PVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR--MGPDNVPLVVEGLEGE 371
            V +  G   S+A+ +      +G      +WG     +LG         P  V+GL+G+
Sbjct: 267 VVKVECGSQFSVALTK------SGAVY---TWGKGDYHRLGHGSDDHVRRPRQVQGLQGK 317

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score =  193 bits (494), Expect = 1e-58
 Identities = 78/316 (24%), Positives = 119/316 (37%), Gaps = 57/316 (18%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTN 81
           S+ G  V S+G+   G LG      G       P  +  L   +V  V+AG  HS  VT 
Sbjct: 123 SSEGE-VYSWGEAEDGKLGH-----GNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTA 176

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA-AFASGVVSS-AIGDDGS 139
            G ++ WG+    +LG    E +     PK VE L    V   A  SG   +  + DD +
Sbjct: 177 AGDLYTWGKGRYGRLGHSDSEDQLK---PKLVEALQGHRVVDIACGSGDAQTLCLTDDDT 233

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS 199
           +W WG    G+LG G       VP ++++L G  +VKV  G   ++A T+ G ++ WG  
Sbjct: 234 VWSWGDGDYGKLGRG-GSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKG 292

Query: 200 ADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPF 259
              R+G+        P                        + V                 
Sbjct: 293 DYHRLGHGSDDHVRRP------------------------RQVQGLQ------------- 315

Query: 260 LVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPV 315
              G +V+ IA G  H +    +G + + G N  GQLG    +    P  +         
Sbjct: 316 ---GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVN 372

Query: 316 SISSGLGHSLAICEVR 331
            ++ G  H+LA    +
Sbjct: 373 RVACGSAHTLAWSTSK 388

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score =  174 bits (443), Expect = 4e-51
 Identities = 68/316 (21%), Positives = 115/316 (36%), Gaps = 63/316 (19%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
                +    +L    +G ++ WG N+  QLG            P   E L  +      
Sbjct: 3   HHHHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKV---PTPCEALATLRPVQLI 59

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI--VKVSFGWGH 183
                  A+  DG L+  G    G+LG+G        P+ +E++    I  V V+ G  H
Sbjct: 60  GGEQTLFAVTADGKLYATGYGAGGRLGIG-GTESVSTPTLLESIQHVFIKKVAVNSGGKH 118

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
            LA + +G+++ WG + DG++G+  ++    P                        +++ 
Sbjct: 119 CLALSSEGEVYSWGEAEDGKLGHGNRSPCDRP------------------------RVIE 154

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM 303
                            + G+EVVD+A G  HS  +   G L + G   YG+LG    + 
Sbjct: 155 ----------------SLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSED 198

Query: 304 GMFPV------DINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG 357
            + P             ++  SG   +L +              + SWG     +LGR G
Sbjct: 199 QLKPKLVEALQGHRVVDIACGSGDAQTLCL-------TDDDT--VWSWGDGDYGKLGRGG 249

Query: 358 PDN--VPLVVEGLEGE 371
            D   VP+ ++ L G 
Sbjct: 250 SDGCKVPMKIDSLTGL 265

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score = 68.4 bits (168), Expect = 5e-13
 Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 17/114 (14%)

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDI----NFHPVSISS 319
           +           +L    +G +   G N  GQLG  +      P          PV +  
Sbjct: 1   MHHHHHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG 60

Query: 320 GLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLGRMGPDNV--PLVVEGLEG 370
           G     A+             G + + G+    +LG  G ++V  P ++E ++ 
Sbjct: 61  GEQTLFAVTA----------DGKLYATGYGAGGRLGIGGTESVSTPTLLESIQH 104

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 9   HNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVT 67
             H    T         G  V ++GD  +G LG  T+          P  V  L    V 
Sbjct: 326 SLHCVCCTE-------DGE-VYTWGDNDEGQLGDGTT-----NAIQRPRLVAALQGKKVN 372

Query: 68  SVSAGHYHSLAVTNN 82
            V+ G  H+LA + +
Sbjct: 373 RVACGSAHTLAWSTS 387

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score =  182 bits (465), Expect = 5e-54
 Identities = 61/355 (17%), Positives = 119/355 (33%), Gaps = 55/355 (15%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNN 82
           +  G  V+  G+G  G LGL   +     +    + V G+  D   +SAG  H+L +T +
Sbjct: 40  TVLGN-VLVCGNGDVGQLGLGEDIL----ERKRLSPVAGI-PDAVDISAGGMHNLVLTKS 93

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
           G ++++G N+E  LGR   E  +  + P  ++           A    S+ + +DG ++ 
Sbjct: 94  GDIYSFGCNDEGALGRDTSEDGSE-SKPDLIDLPG--KALCISAGDSHSACLLEDGRVFA 150

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WG  +     +G    +    + ++ + G     ++ G  H +  T  GK+F  G +  G
Sbjct: 151 WGSFRDSHGNMG-LTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQG 209

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
           ++G              +   S S +             +                 +  
Sbjct: 210 QLG-------------RLSERSISGEGRRGKRDLLRPTQLI----------------ITR 240

Query: 263 GVEVVDIACGFDHSLVLGRN-GVLLSCGSNVYGQLGREKQDMGMFP--VDINFHPV-SIS 318
                 I      + +      V+ + G N + QL  E +        +      +  I+
Sbjct: 241 AKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIA 300

Query: 319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG---RMGPDNVPLVVEGLEG 370
            G  H++ +                  G     +LG          P +V+ L  
Sbjct: 301 GGQHHTVILTT------DLKCS---VVGRPEYGRLGLGDVKDVVEKPTIVKKLTE 346

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score =  170 bits (433), Expect = 2e-49
 Identities = 64/345 (18%), Positives = 120/345 (34%), Gaps = 80/345 (23%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           + SFG   +GALG  TS  G      +P  +         +SAG  HS  +  +G V+AW
Sbjct: 96  IYSFGCNDEGALGRDTSEDG---SESKPDLIDLP-GKALCISAGDSHSACLLEDGRVFAW 151

Query: 89  G--RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWGK 145
           G  R++   +G     ++ T   P  +          + ASG      +   G ++  G 
Sbjct: 152 GSFRDSHGNMGLTIDGNKRT---PIDLMEGTVC---CSIASGADHLVILTTAGKVFTVGC 205

Query: 146 SKRGQLGLGKDIT----------EAIVPSRVEALAGEKIVKVSFGWGHALA-QTEDGKLF 194
           +++GQLG   + +          + + P+++     +    +          +++   ++
Sbjct: 206 AEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIW 265

Query: 195 GWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI 254
             G +   ++ +  K  E +                                        
Sbjct: 266 ATGLNNFKQLAHETKGKEFAL--------------------------------------- 286

Query: 255 IWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMGMFPV---DI 310
              P   E  ++  IA G  H+++L  +      G   YG+LG  + +D+   P     +
Sbjct: 287 --TPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKL 344

Query: 311 NFHPVSISSGLGHSLAICEVRSSNVTGGARGIV-SWGWNRSSQLG 354
               VS+  G   S A+             G + SWG   ++QLG
Sbjct: 345 TEKIVSVGCGEVCSYAVTI----------DGKLYSWGSGVNNQLG 379

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score =  166 bits (422), Expect = 9e-48
 Identities = 60/326 (18%), Positives = 108/326 (33%), Gaps = 70/326 (21%)

Query: 23  SASGTAVVSFGDG--SQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVT 80
              G  V ++G    S G +GL      + G+   P  +    +   S+++G  H + +T
Sbjct: 143 LEDGR-VFAWGSFRDSHGNMGL-----TIDGNKRTPIDLMEG-TVCCSIASGADHLVILT 195

Query: 81  NNGAVWAWGRNNEVQLGRGALESRATWND--------PKRVEGLDQVNVCAAFASGVVSS 132
             G V+  G   + QLGR +  S +            P ++         A +A+   + 
Sbjct: 196 TAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTF 255

Query: 133 AIG-DDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDG 191
                   +W  G +   QL       +    + ++    + I  ++ G  H +  T D 
Sbjct: 256 MRESQTQVIWATGLNNFKQLAHE-TKGKEFALTPIKTE-LKDIRHIAGGQHHTVILTTDL 313

Query: 192 KLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKY 251
           K    G    GR+G               D                              
Sbjct: 314 KCSVVGRPEYGRLGL----------GDVKDVVE--------------------------- 336

Query: 252 MPIIWEPFLVEGVE--VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD 309
                +P +V+ +   +V + CG   S  +  +G L S GS V  QLG    D  + P+ 
Sbjct: 337 -----KPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIV 391

Query: 310 I------NFHPVSISSGLGHSLAICE 329
           +        H +  S G  H++ + +
Sbjct: 392 VVSKNTQGKHMLLASGGGQHAIFLVK 417

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score =  154 bits (392), Expect = 2e-43
 Identities = 61/339 (17%), Positives = 98/339 (28%), Gaps = 78/339 (23%)

Query: 33  GDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNN 92
           G   + AL           +A E  + P   +    ++         T  G V   G  +
Sbjct: 1   GSPRRKALTN-------NNNAGEAEQQPPK-AKRARIAFHLELPKRRTVLGNVLVCGNGD 52

Query: 93  EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLG 152
             QLG G  E          V G+   +     A G+ +  +   G ++ +G +  G LG
Sbjct: 53  VGQLGLG--EDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALG 108

Query: 153 LGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALE 212
                 +             K + +S G  H+    EDG++F WG   D   GN+G    
Sbjct: 109 RD-TSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSH-GNMG---- 162

Query: 213 SSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV-EGVEVVDIAC 271
              L  + ++                                   P  + EG     IA 
Sbjct: 163 ---LTIDGNK---------------------------------RTPIDLMEGTVCCSIAS 186

Query: 272 GFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHP---------------VS 316
           G DH ++L   G + + G    GQLGR  +                             +
Sbjct: 187 GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEA 246

Query: 317 ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGR 355
           I +    +               + I + G N   QL  
Sbjct: 247 IWATNYCTFMR--------ESQTQVIWATGLNNFKQLAH 277

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score =  140 bits (355), Expect = 4e-38
 Identities = 56/283 (19%), Positives = 96/283 (33%), Gaps = 59/283 (20%)

Query: 9   HNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGG------DAYEPTRVPGL 62
            +H+ +LT+       +G  V + G   QG LG  +  +  G       D   PT++   
Sbjct: 188 ADHLVILTT-------AGK-VFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIIT 239

Query: 63  P-SDVTSVSAGHYHSLAVT-NNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVN 120
                 ++ A +Y +         +WA G NN  QL                ++   + +
Sbjct: 240 RAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFA---LTPIKTELK-D 295

Query: 121 VCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG 180
           +         +  +  D    V G+ + G+LGLG        P+ V+ L  EKIV V  G
Sbjct: 296 IRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKL-TEKIVSVGCG 354

Query: 181 WGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQK 240
              + A T DGKL+ WG   + ++G               D                   
Sbjct: 355 EVCSYAVTIDGKLYSWGSGVNNQLGV----------GDGDDELE---------------- 388

Query: 241 LVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNG 283
                       PI+      +G  ++  + G  H++ L +  
Sbjct: 389 ------------PIVVVSKNTQGKHMLLASGGGQHAIFLVKAD 419

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score =  130 bits (329), Expect = 2e-34
 Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 11/175 (6%)

Query: 20  FMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAV 79
           FMR +    + + G  +   L   T      G  +  T +     D+  ++ G +H++ +
Sbjct: 255 FMRESQTQVIWATGLNNFKQLAHETK-----GKEFALTPIKTELKDIRHIAGGQHHTVIL 309

Query: 80  TNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGS 139
           T +      GR    +LG G ++       P  V+ L +  + +     V S A+  DG 
Sbjct: 310 TTDLKCSVVGRPEYGRLGLGDVKDVVEK--PTIVKKLTE-KIVSVGCGEVCSYAVTIDGK 366

Query: 140 LWVWGKSKRGQLGLGKDITEAIVPSRVE--ALAGEKIVKVSFGWGHALAQTEDGK 192
           L+ WG     QLG+G D  + + P  V      G+ ++  S G  HA+   +  K
Sbjct: 367 LYSWGSGVNNQLGVG-DGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKADK 420

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score = 92.4 bits (230), Expect = 7e-21
 Identities = 48/234 (20%), Positives = 78/234 (33%), Gaps = 61/234 (26%)

Query: 144 GKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGR 203
           G  +R  L    +  EA      +     K  +++F       +T  G +   G    G+
Sbjct: 1   GSPRRKALTNNNNAGEA-----EQQPPKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQ 55

Query: 204 IGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEG 263
           +G     LE   L                                           +   
Sbjct: 56  LGLGEDILERKRLSP-----------------------------------------VAGI 74

Query: 264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFP----VDINFHPVSISS 319
            + VDI+ G  H+LVL ++G + S G N  G LGR+  + G       +D+    + IS+
Sbjct: 75  PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISA 134

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSS--QLGRMGPDNVPLVVEGLEGE 371
           G  HS  + E       G    + +WG  R S   +G     N    ++ +EG 
Sbjct: 135 GDSHSACLLE------DG---RVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGT 179

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score =  182 bits (463), Expect = 3e-53
 Identities = 66/320 (20%), Positives = 109/320 (34%), Gaps = 50/320 (15%)

Query: 29  VVSFGDG--SQGALGLPTSLTGVGGDAYEPTRVPGL-PSDVTSVSAGHYHSLAVTNNGAV 85
           V ++G    ++G LG              P +VP     ++  ++ G  H L +   G V
Sbjct: 169 VYAWGTFRCNEGILGFYQDKIK---IQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMV 225

Query: 86  WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSS-AIGDDGSLWVWG 144
           +AWG   + QLGR  +E         R  GL  V      ASG     A+  D  L  WG
Sbjct: 226 FAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHV---KYIASGENHCFALTKDNKLVSWG 282

Query: 145 KSKRGQLGLG---KDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSAD 201
            ++ GQ G+    +D      P R+       I  ++ G  H+L  ++DG L+  G    
Sbjct: 283 LNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDM 342

Query: 202 GRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV 261
             +G     L          ++                               +  P  +
Sbjct: 343 FEVGIPKDNLPEYTYKDVHGKAR-----------------------------AVPLPTKL 373

Query: 262 EGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGR-EKQDMGMFPVDI------NFH 313
             V     +A G  HS+ + +NG+  S G      +G    +D    P  I      + +
Sbjct: 374 NNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHN 433

Query: 314 PVSISSGLGHSLAICEVRSS 333
            + +  G   S++     S 
Sbjct: 434 IILVGCGGQFSVSGGVKLSD 453

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score =  171 bits (435), Expect = 3e-49
 Identities = 77/384 (20%), Positives = 129/384 (33%), Gaps = 90/384 (23%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP---SDVTSVSAGHYHSLAVTNNGAV 85
           +  +G GS   LGL         +   P   P LP   + + S + G  H+LA+     V
Sbjct: 31  IFCWGTGSMCELGLGP--LAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNV 88

Query: 86  WAWGRNNEVQLGRGALESRATWND--------------------------PKRVEGLDQV 119
           W+WG N+   LGR    ++    D                                 +  
Sbjct: 89  WSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGH 148

Query: 120 NVCAAFASGVVSSAIGDDGSLWVWG--KSKRGQLGLGKDITEAI-VPSRVEALAGEKIVK 176
            V    A+  +S A+  +G ++ WG  +   G LG  +D  +    P +V   +   IV+
Sbjct: 149 KVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQ 208

Query: 177 VSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIE 236
           ++ G  H L   E+G +F WG     ++G                               
Sbjct: 209 LAPGKDHILFLDEEGMVFAWGNGQQNQLGR------------------------KVMERF 244

Query: 237 KAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL 296
           + + L                P       V  IA G +H   L ++  L+S G N +GQ 
Sbjct: 245 RLKTLD---------------PRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQC 289

Query: 297 G----REKQDMGMFPVDI----NFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWN 348
           G     E   +   P  +    N    SI++G  HSL + +       G    + S G  
Sbjct: 290 GVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQ------DG---DLYSCGRL 340

Query: 349 RSSQLGRMGPDNVPLVVEGLEGES 372
              ++G    +      + + G++
Sbjct: 341 DMFEVGIPKDNLPEYTYKDVHGKA 364

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score =  169 bits (430), Expect = 2e-48
 Identities = 80/390 (20%), Positives = 136/390 (34%), Gaps = 94/390 (24%)

Query: 29  VVSFGDGSQGALGLPTS------------------LTGVGGDAYEPTRVPGLPS------ 64
           V S+G    GALG  TS                     +      P ++P          
Sbjct: 88  VWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEG 147

Query: 65  -DVTSVSAGHYHSLAVTNNGAVWAWG--RNNEVQLGRGALESRATWNDPKRVEGLDQVNV 121
             V  ++A    S A+ +NG V+AWG  R NE  LG    + +     P +V    + N+
Sbjct: 148 HKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKT-PWKVPTFSKYNI 206

Query: 122 CAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW 181
                       + ++G ++ WG  ++ QLG        +            +  ++ G 
Sbjct: 207 VQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGE 266

Query: 182 GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKL 241
            H  A T+D KL  WG +  G+ G                    S+     + + K ++L
Sbjct: 267 NHCFALTKDNKLVSWGLNQFGQCGV-------------------SEDVEDGALVTKPKRL 307

Query: 242 VSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ 301
                               + V +  IA G  HSL+L ++G L SCG     ++G  K 
Sbjct: 308 AL-----------------PDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKD 350

Query: 302 DMGMF--------------PVDINFHP--VSISSGLGHSLAICEVRSSNVTGGARGIV-S 344
           ++  +              P  +N  P   S+++G  HS+A+ +           GI  S
Sbjct: 351 NLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQ----------NGIAYS 400

Query: 345 WGWNRSSQLG---RMGPDNVPLVVEGLEGE 371
           WG+  +  +G         VP  ++    +
Sbjct: 401 WGFGETYAVGLGPFEDDTEVPTRIKNTATQ 430

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score =  163 bits (413), Expect = 5e-46
 Identities = 60/359 (16%), Positives = 107/359 (29%), Gaps = 93/359 (25%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
                 + S + +    + H         ++ WG  +  +LG G L        P+    
Sbjct: 3   HHHHHHM-SHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPF 61

Query: 116 L--DQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAI------------ 161
           L  D+  + +    G+ + A+ ++ ++W WG +  G LG      +              
Sbjct: 62  LPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDD 121

Query: 162 ----------------VPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIG 205
                             S      G K+V+++     + A   +G+++ WG       G
Sbjct: 122 EDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNE-G 180

Query: 206 NLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLV---E 262
            LG   +                                         I   P+ V    
Sbjct: 181 ILGFYQDKI--------------------------------------KIQKTPWKVPTFS 202

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINF-----HPVSI 317
              +V +A G DH L L   G++ + G+    QLGR+  +               H   I
Sbjct: 203 KYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYI 262

Query: 318 SSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNVPLVVEGLEG 370
           +SG  H  A+ +            +VSWG N+  Q G             P  +   + 
Sbjct: 263 ASGENHCFALTK-------DNK--LVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDN 312

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score =  147 bits (373), Expect = 2e-40
 Identities = 55/285 (19%), Positives = 92/285 (32%), Gaps = 64/285 (22%)

Query: 10  NHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP--SDVT 67
           +H+  L          G  V ++G+G Q  LG       V       T  P       V 
Sbjct: 214 DHILFLDE-------EGM-VFAWGNGQQNQLGR-----KVMERFRLKTLDPRPFGLRHVK 260

Query: 68  SVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT-WNDPKRVEGLDQVNVCAAFA 126
            +++G  H  A+T +  + +WG N   Q G             PKR+   D V + +  A
Sbjct: 261 YIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAA 320

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEA-----------IVPSRVEALAGEKIV 175
               S  +  DG L+  G+    ++G+ KD                VP   +     K  
Sbjct: 321 GEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFK 380

Query: 176 KVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTI 235
            V+ G  H++A  ++G  + WG+     +G                   E D E+     
Sbjct: 381 SVAAGSHHSVAVAQNGIAYSWGFGETYAVGL---------------GPFEDDTEV----- 420

Query: 236 EKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLG 280
                            P   +    +   ++ + CG   S+  G
Sbjct: 421 -----------------PTRIKNTATQDHNIILVGCGGQFSVSGG 448

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score =  120 bits (302), Expect = 2e-30
 Identities = 38/200 (19%), Positives = 77/200 (38%), Gaps = 22/200 (11%)

Query: 23  SASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTN 81
           +     +VS+G    G  G+       G    +P R+       + S++AG +HSL ++ 
Sbjct: 273 TKDNK-LVSWGLNQFGQCGVSED-VEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQ 330

Query: 82  NGAVWAWGRNNEVQLGRGALESRATWND-----------PKRVEGLDQVNVCAAFASGVV 130
           +G +++ GR +  ++G                       P ++  +      +  A    
Sbjct: 331 DGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHH 388

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE--ALAGEKIVKVSFGWGHALAQT 188
           S A+  +G  + WG  +   +GLG    +  VP+R++  A     I+ V  G   +++  
Sbjct: 389 SVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVS-- 446

Query: 189 EDGKLFGWGYSADGRIGNLG 208
             G +      A+ R   + 
Sbjct: 447 --GGVKLSDEDAEKRADEMD 464

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score = 81.0 bits (200), Expect = 6e-17
 Identities = 32/238 (13%), Positives = 58/238 (24%), Gaps = 83/238 (34%)

Query: 173 KIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISS 232
            I+     + H     +   +F WG  +   +G                           
Sbjct: 11  HIINAQEDYKHMYLSVQPLDIFCWGTGSMCELG--------------------------- 43

Query: 233 STIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNV 292
                   L      KE   P +      +  +++  A G  H+L L     + S G N 
Sbjct: 44  --------LGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCND 95

Query: 293 YGQLGREKQDMGMFPVDINFHP---------------------------------VSISS 319
            G LGR+  +      D++                                    V +++
Sbjct: 96  VGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAA 155

Query: 320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG------RMGPDNVPLVVEGLEGE 371
               S A+         G      +WG  R ++        ++     P  V      
Sbjct: 156 TDNMSCALFS------NGEVY---AWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKY 204

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score = 77.1 bits (190), Expect = 1e-15
 Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 19/148 (12%)

Query: 23  SASGTAVVSFGDGSQGALGLPTS---------LTGVGGDAYEPTRVPGLPSDVTSVSAGH 73
           S  G  + S G      +G+P           + G       PT++  +     SV+AG 
Sbjct: 329 SQDGD-LYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV-PKFKSVAAGS 386

Query: 74  YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG--LDQVNVCAAFASGVVS 131
           +HS+AV  NG  ++WG      +G G  E       P R++       N+      G  S
Sbjct: 387 HHSVAVAQNGIAYSWGFGETYAVGLGPFEDDT--EVPTRIKNTATQDHNIILVGCGGQFS 444

Query: 132 SAIGDDGSLWVWGKSKRGQLGLGKDITE 159
            + G    + +  +    +     D+  
Sbjct: 445 VSGG----VKLSDEDAEKRADEMDDLEH 468

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score =  120 bits (303), Expect = 7e-32
 Identities = 69/307 (22%), Positives = 112/307 (36%), Gaps = 63/307 (20%)

Query: 48  GVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATW 107
           G   D  E T      S V +++ G++H LA+   G V  WG N   QL   A       
Sbjct: 8   GGNNDWGEATVPAEAQSGVDAIAGGYFHGLALKG-GKVLGWGANLNGQLTMPAATQS--- 63

Query: 108 NDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE 167
                        V A  A    S A+  DG +  WG ++ GQ               V 
Sbjct: 64  ------------GVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTT-------------VP 97

Query: 168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESD 227
           A A   +  ++ G   + A  +DGK+  WG  +DG+          +   S +       
Sbjct: 98  AEARSGVDAIAAGAWASYA-LKDGKVIAWGDDSDGQTTV------PAEAQSGVTALDGGV 150

Query: 228 QEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLS 287
               ++   K   +++ G        +   P       V D+A G  HSL L ++G +++
Sbjct: 151 Y---TALAVKNGGVIAWGDNYFGQTTV---PAEA-QSGVDDVAGGIFHSLAL-KDGKVIA 202

Query: 288 CGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGW 347
            G N Y Q           P +      +I+SG  +SLA        +  G   +++WG 
Sbjct: 203 WGDNRYKQTTV--------PTEALSGVSAIASGEWYSLA--------LKNG--KVIAWGS 244

Query: 348 NRSSQLG 354
           +R++   
Sbjct: 245 SRTAPSS 251

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score = 81.6 bits (202), Expect = 7e-18
 Identities = 48/272 (17%), Positives = 78/272 (28%), Gaps = 100/272 (36%)

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
            +V AWG NN+                    E    V    A A G         G +  
Sbjct: 2   TSVVAWGGNNDWGEA------------TVPAEAQSGV---DAIAGGYFHGLALKGGKVLG 46

Query: 143 WGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADG 202
           WG +  GQL +              A     +  ++ G  H+LA   DG++  WG + DG
Sbjct: 47  WGANLNGQLTMP-------------AATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDG 92

Query: 203 RIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE 262
           +          +   S +                                          
Sbjct: 93  QTTV------PAEARSGV------------------------------------------ 104

Query: 263 GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLG 322
                 IA G   S  L ++G +++ G +  GQ           P +      ++  G+ 
Sbjct: 105 ----DAIAAGAWASYAL-KDGKVIAWGDDSDGQTTV--------PAEAQSGVTALDGGVY 151

Query: 323 HSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
            +LA+          G  G+++WG N   Q  
Sbjct: 152 TALAV--------KNG--GVIAWGDNYFGQTT 173

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score = 80.4 bits (199), Expect = 2e-17
 Identities = 42/200 (21%), Positives = 64/200 (32%), Gaps = 52/200 (26%)

Query: 29  VVSFGDGSQGALGLPTS-LTGV---------------------GGDAYEPTRVPGLPSDV 66
           V+++G    G   +P    +GV                     G D+   T VP      
Sbjct: 83  VIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSG 142

Query: 67  TSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA 126
            +   G  ++     NG V AWG N   Q                  E    V      A
Sbjct: 143 VTALDGGVYTALAVKNGGVIAWGDNYFGQTTVP-------------AEAQSGV---DDVA 186

Query: 127 SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA 186
            G+  S    DG +  WG ++  Q  +             EAL+G  +  ++ G  ++LA
Sbjct: 187 GGIFHSLALKDGKVIAWGDNRYKQTTVP-----------TEALSG--VSAIASGEWYSLA 233

Query: 187 QTEDGKLFGWGYSADGRIGN 206
              +GK+  WG S       
Sbjct: 234 LK-NGKVIAWGSSRTAPSSV 252

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score = 76.2 bits (188), Expect = 6e-16
 Identities = 44/193 (22%), Positives = 64/193 (33%), Gaps = 60/193 (31%)

Query: 29  VVSFGDGSQGALGLPTS-LTGV---------------------GGDAYEPTRVP-GLPSD 65
           V+++GD S G   +P    +GV                     G + +  T VP    S 
Sbjct: 122 VIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSG 181

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
           V  V+ G +HSLA+ + G V AWG N   Q                  E L  V   +A 
Sbjct: 182 VDDVAGGIFHSLALKD-GKVIAWGDNRYKQTTVP-------------TEALSGV---SAI 224

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHAL 185
           ASG   S    +G +  WG S+     +   ++                  +  G   A 
Sbjct: 225 ASGEWYSLALKNGKVIAWGSSRTAPSSVQSGVS-----------------SIEAGPNAAY 267

Query: 186 AQTEDGKLFGWGY 198
           A        G G+
Sbjct: 268 ALKGGS---GSGH 277

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 13/62 (20%)

Query: 266 VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSL 325
           V  IA G  +SL L +NG +++ GS+                  +     SI +G   + 
Sbjct: 221 VSAIASGEWYSLAL-KNGKVIAWGSSRTAPSS--------VQSGV----SSIEAGPNAAY 267

Query: 326 AI 327
           A+
Sbjct: 268 AL 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	372
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	100.0
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	100.0
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	100.0
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	100.0
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	100.0
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	100.0
3of7_A	473	Regulator of chromosome condensation; beta-propell	100.0
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	100.0
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	100.0
3of7_A	473	Regulator of chromosome condensation; beta-propell	100.0
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	100.0
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	100.0
4gbf_A	400	Phikz131; 7-bladed beta-propeller, possibly partic	96.19
4gbf_A	400	Phikz131; 7-bladed beta-propeller, possibly partic	95.88
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	95.62
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	95.3
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.43
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	93.41
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	92.6
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	91.8
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	91.14
3jrp_A	379	Fusion protein of protein transport protein SEC13	89.87
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	89.72
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	89.48
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	86.55
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	85.51
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	84.03
3jro_A	753	Fusion protein of protein transport protein SEC13	83.63
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	82.05
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	80.87
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	80.56
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	80.34
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	80.16

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=100.00  E-value=4.3e-62  Score=465.73  Aligned_cols=301  Identities=30%  Similarity=0.520  Sum_probs=269.0

Q ss_pred             hcceeeeeeEEEEeeCCC-cEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCC-CeEEEecCCCceEEEecCCcEEE
Q 042844           10 NHVNVLTSRIFMRSASGT-AVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNGAVWA   87 (372)
Q Consensus        10 ~~~~~~~~~~~~~l~~~g-~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~-~i~~I~~G~~h~~~lt~~G~v~~   87 (372)
                      +-.+++|..|+++++.++ +||+||.|.+||||.+.     ..+...|.+++.+.. +|++|+||..|+++|+++|+||+
T Consensus        70 i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~-----~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~  144 (406)
T 4d9s_A           70 IVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGN-----SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQS  144 (406)
T ss_dssp             EEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSS-----CCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEE
T ss_pred             EEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCC-----CCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEE
Confidence            345789999999999886 99999999999999987     346788988887654 79999999999999999999999


Q ss_pred             EeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEec
Q 042844           88 WGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE  167 (372)
Q Consensus        88 ~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~  167 (372)
                      ||.|.+||||.+...   ....|.+++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.. .....|.++.
T Consensus       145 wG~n~~GqLG~g~~~---~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~-~~~~~p~~v~  220 (406)
T 4d9s_A          145 WGRNQNGQLGLGDTE---DSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR-TDRLVPERVT  220 (406)
T ss_dssp             EECCTTSTTCSSSCC---CEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSS-CCEEEEEECC
T ss_pred             eCCCCCccCCCCCCC---CcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCC-CCcCccEEec
Confidence            999999999998876   345788888888889999999999999999999999999999999999865 5667899998


Q ss_pred             ccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccc
Q 042844          168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME  247 (372)
Q Consensus       168 ~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (372)
                      .+...+|++|+||.+|+++|+++|+||+||.|.++|||.....                                     
T Consensus       221 ~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~-------------------------------------  263 (406)
T 4d9s_A          221 STGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLE-------------------------------------  263 (406)
T ss_dssp             CSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCC-------------------------------------
T ss_pred             ccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCc-------------------------------------
Confidence            8888899999999999999999999999999999999987321                                     


Q ss_pred             cccCCCceeceeeec---CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec----cccEEEecC
Q 042844          248 KEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSISSG  320 (372)
Q Consensus       248 ~~~~~~~~~~p~~i~---~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~----~~i~~ia~G  320 (372)
                            ....|.+++   ..+|++|+||..|++||+++|+||+||.|.+||||.++......|+++.    .+|++|+||
T Consensus       264 ------~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G  337 (406)
T 4d9s_A          264 ------DHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCG  337 (406)
T ss_dssp             ------CEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEEC
T ss_pred             ------CccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeC
Confidence                  123466665   5679999999999999999999999999999999999988888888875    679999999


Q ss_pred             CCceEEEEeeccccccCCCccEEEecCCCCCCccCCC--CCCCceEEecCCCC
Q 042844          321 LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG--PDNVPLVVEGLEGE  371 (372)
Q Consensus       321 ~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~--~~~~p~~i~~~~~~  371 (372)
                      .+|+++|++         +|+||+||+|.+||||+++  +..+|++|+.|+.+
T Consensus       338 ~~hs~alt~---------~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~  381 (406)
T 4d9s_A          338 WRHTLAVTE---------RNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVD  381 (406)
T ss_dssp             SSEEEEEET---------TSCEEEEECCTTSTTCSSSCCCEEEEEECGGGCSC
T ss_pred             CCeEEEEeC---------CCCEEEecCCCCCccCCCCCCCCcCCEEeeeecCC
Confidence            999999999         9999999999999999999  66789999987654

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.3e-61  Score=460.01  Aligned_cols=299  Identities=26%  Similarity=0.514  Sum_probs=267.0

Q ss_pred             ceeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCC---CeEEEecCCCceEEEecCCcEEEE
Q 042844           12 VNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS---DVTSVSAGHYHSLAVTNNGAVWAW   88 (372)
Q Consensus        12 ~~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~---~i~~I~~G~~h~~~lt~~G~v~~~   88 (372)
                      .+++|..|+++++++|+||+||.|.+||||.+.     ......|.+++.+..   ++++|+||..|++||+++|+||+|
T Consensus        57 ~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~-----~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w  131 (389)
T 3kci_A           57 QLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG-----TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW  131 (389)
T ss_dssp             EEEEETTEEEEEETTSCEEEEECCGGGTTSSSS-----SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred             EEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC-----cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence            478999999999999999999999999999987     346788888876543   468999999999999999999999


Q ss_pred             eCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecc
Q 042844           89 GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA  168 (372)
Q Consensus        89 G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~  168 (372)
                      |.|.+||||.+...   ....|.+++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.. .....|.+++.
T Consensus       132 G~n~~GqLG~g~~~---~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~-~~~~~p~~v~~  207 (389)
T 3kci_A          132 GEAEDGKLGHGNRS---PCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDS-EDQLKPKLVEA  207 (389)
T ss_dssp             ECCGGGTTCSSSCC---CEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSC-CCEEEEEECGG
T ss_pred             eCCCCCcCCCCCCc---cCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCC-cccccceEecc
Confidence            99999999998765   346788888888889999999999999999999999999999999999866 56678999998


Q ss_pred             cCCCcEEEEEecC--CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhccc
Q 042844          169 LAGEKIVKVSFGW--GHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGM  246 (372)
Q Consensus       169 ~~~~~i~~I~~g~--~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (372)
                      +.+.+|++|+||.  .|+++|+++|+||+||.|.++|||.....                                    
T Consensus       208 ~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~------------------------------------  251 (389)
T 3kci_A          208 LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSD------------------------------------  251 (389)
T ss_dssp             GTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCC------------------------------------
T ss_pred             cCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCC------------------------------------
Confidence            8888999999994  89999999999999999999999987321                                    


Q ss_pred             ccccCCCceeceeeec---CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec----cccEEEec
Q 042844          247 EKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSISS  319 (372)
Q Consensus       247 ~~~~~~~~~~~p~~i~---~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~----~~i~~ia~  319 (372)
                             ....|.+++   ..+|++|+||..|++||+++|+||+||.|.++|||.+.......|+++.    .+|++|+|
T Consensus       252 -------~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~  324 (389)
T 3kci_A          252 -------GCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT  324 (389)
T ss_dssp             -------CEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE
T ss_pred             -------CccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe
Confidence                   122466665   4579999999999999999999999999999999999988888899886    57999999


Q ss_pred             CCCceEEEEeeccccccCCCccEEEecCCCCCCccCCC--CCCCceEEecCCCC
Q 042844          320 GLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG--PDNVPLVVEGLEGE  371 (372)
Q Consensus       320 G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~--~~~~p~~i~~~~~~  371 (372)
                      |.+|++++++         +|+||+||+|.+||||++.  +...|++|+.+++.
T Consensus       325 G~~h~~al~~---------~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~  369 (389)
T 3kci_A          325 GSLHCVCCTE---------DGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGK  369 (389)
T ss_dssp             CSSEEEEEET---------TCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTS
T ss_pred             ccCeEEEECC---------CCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCC
Confidence            9999999999         9999999999999999998  55679999888764

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=100.00  E-value=8.5e-61  Score=456.75  Aligned_cols=296  Identities=29%  Similarity=0.533  Sum_probs=264.4

Q ss_pred             ceeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCC-CeEEEecCCCceEEEecCC-cEEEEe
Q 042844           12 VNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS-DVTSVSAGHYHSLAVTNNG-AVWAWG   89 (372)
Q Consensus        12 ~~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~-~i~~I~~G~~h~~~lt~~G-~v~~~G   89 (372)
                      .+++|..|+++++++|+||+||.|.+||||.+.     ..+...|.+++.+.. +|++|+||..|+++|+++| +||+||
T Consensus        20 ~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~-----~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG   94 (406)
T 4d9s_A           20 IISAGASHSVALLSGDIVCSWGRGEDGQLGHGD-----AEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG   94 (406)
T ss_dssp             EEEECSSEEEEEETTTEEEEEECCTTSTTCSSS-----CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred             EEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCC-----cccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence            478999999999999999999999999999988     346788999887653 7999999999999999986 999999


Q ss_pred             CCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEeccc
Q 042844           90 RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL  169 (372)
Q Consensus        90 ~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~  169 (372)
                      .|.+||||.+...   ....|.+++.+...+|++|+||..|+++|+++|+||+||.|.+||||.+.. .....|.++..+
T Consensus        95 ~n~~GqLG~g~~~---~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~-~~~~~p~~v~~~  170 (406)
T 4d9s_A           95 WGDFGRLGHGNSS---DLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT-EDSLVPQKIQAF  170 (406)
T ss_dssp             CCGGGTTCSSSCC---CEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC-CCEEEEEECGGG
T ss_pred             CCCCcCCCCCCCC---ccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCC-CCcccceEeccc
Confidence            9999999998765   346788888888889999999999999999999999999999999999865 556789999988


Q ss_pred             CCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccccc
Q 042844          170 AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKE  249 (372)
Q Consensus       170 ~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (372)
                      .+.+|++|+||.+|++||+++|+||+||.|.++|||......                                      
T Consensus       171 ~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~--------------------------------------  212 (406)
T 4d9s_A          171 EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTD--------------------------------------  212 (406)
T ss_dssp             TTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCC--------------------------------------
T ss_pred             CCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCC--------------------------------------
Confidence            888999999999999999999999999999999999873211                                      


Q ss_pred             cCCCceeceeeec---CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec----cccEEEecCCC
Q 042844          250 KYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSISSGLG  322 (372)
Q Consensus       250 ~~~~~~~~p~~i~---~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~----~~i~~ia~G~~  322 (372)
                           ...|.++.   ..+|++|+||.+|+++|+++|+||+||.|.+||||.++......|.++.    .+|++|+||.+
T Consensus       213 -----~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~  287 (406)
T 4d9s_A          213 -----RLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWR  287 (406)
T ss_dssp             -----EEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS
T ss_pred             -----cCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCC
Confidence                 12455554   5789999999999999999999999999999999999988888898886    46999999999


Q ss_pred             ceEEEEeeccccccCCCccEEEecCCCCCCccCCC--CCCCceEEecC
Q 042844          323 HSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG--PDNVPLVVEGL  368 (372)
Q Consensus       323 ~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~--~~~~p~~i~~~  368 (372)
                      |+++|++         +|+||+||+|.+||||++.  +...|++|+-.
T Consensus       288 hs~alt~---------~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~  326 (406)
T 4d9s_A          288 HTMALTS---------DGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP  326 (406)
T ss_dssp             EEEEEET---------TSCEEEEECCTTSTTCSSSSSCEEEEEEECCG
T ss_pred             EEEEEcC---------CCeEEEeeCCCCCCCCCCCCCCCccCEEEecc
Confidence            9999999         9999999999999999998  45567777643

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=100.00  E-value=4.5e-59  Score=447.72  Aligned_cols=301  Identities=21%  Similarity=0.268  Sum_probs=260.2

Q ss_pred             hhhcceeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEE
Q 042844            8 VHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWA   87 (372)
Q Consensus         8 ~~~~~~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~   87 (372)
                      ..+..+++|..|+++++++|+||+||.|.+||||.+...   ......|.+++ ++.+|++|+||..|+++|+++|+||+
T Consensus        75 ~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~---~~~~~~P~~v~-~~~~i~~va~G~~hs~al~~~G~v~~  150 (423)
T 3mvd_K           75 PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSE---DGSESKPDLID-LPGKALCISAGDSHSACLLEDGRVFA  150 (423)
T ss_dssp             SSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCS---TTSSSSCEECC-CSSCEEEEEECSSEEEEEETTSCEEE
T ss_pred             CCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcC---CccccCCeEEc-CCCCEEEEEcCcCeEEEEeCCCeEEE
Confidence            334568899999999999999999999999999998743   23467888887 55799999999999999999999999


Q ss_pred             EeC--CCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC--------
Q 042844           88 WGR--NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDI--------  157 (372)
Q Consensus        88 ~G~--n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~--------  157 (372)
                      ||.  |.+||||.+...     ..+++++.+...+|++|+||..|+++|+++|+||+||.|.+||||.+...        
T Consensus       151 wG~~~n~~GqlG~~~~~-----~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~  225 (423)
T 3mvd_K          151 WGSFRDSHGNMGLTIDG-----NKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRR  225 (423)
T ss_dssp             EECEECSSSEEESBTTB-----CEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTT
T ss_pred             EeCCCCCCCCcCcCCCC-----CCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCccccccccccc
Confidence            999  999999998766     23445555677789999999999999999999999999999999997542        


Q ss_pred             --cccccceEecccCCCcEEEEEecCCeEEEE-eCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhh
Q 042844          158 --TEAIVPSRVEALAGEKIVKVSFGWGHALAQ-TEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSST  234 (372)
Q Consensus       158 --~~~~~p~~i~~~~~~~i~~I~~g~~~~~~l-t~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (372)
                        .....|.++......+|++|+||.+|++++ +++|+||+||.|.++|||....                         
T Consensus       226 ~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~-------------------------  280 (423)
T 3mvd_K          226 GKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETK-------------------------  280 (423)
T ss_dssp             TTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCT-------------------------
T ss_pred             ccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCC-------------------------
Confidence              345688888877778899999999999999 6999999999999999998522                         


Q ss_pred             HHHhhhhhhcccccccCCCceeceeeecCccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCC-cccceeec--
Q 042844          235 IEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDM-GMFPVDIN--  311 (372)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~-~~~P~~v~--  311 (372)
                                      .......|.++...+|++|+||..|++||+++|+||+||.|.+||||.++... ...|.++.  
T Consensus       281 ----------------~~~~~~~p~~~~~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l  344 (423)
T 3mvd_K          281 ----------------GKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKL  344 (423)
T ss_dssp             ----------------TCSEEEEEEEECCCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTC
T ss_pred             ----------------CCceeeeeEEcCCCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccC
Confidence                            11123456666678899999999999999999999999999999999998665 34677765  


Q ss_pred             -cccEEEecCCCceEEEEeeccccccCCCccEEEecCCCCCCccCCC--CCCCceEEec
Q 042844          312 -FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG--PDNVPLVVEG  367 (372)
Q Consensus       312 -~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~--~~~~p~~i~~  367 (372)
                       .+|++|+||.+|+++|++         +|+||+||+|.+||||+++  +..+|++|+.
T Consensus       345 ~~~v~~ia~G~~hs~alt~---------~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~  394 (423)
T 3mvd_K          345 TEKIVSVGCGEVCSYAVTI---------DGKLYSWGSGVNNQLGVGDGDDELEPIVVVS  394 (423)
T ss_dssp             CSCEEEEEEETTEEEEEET---------TSCEEEEECCTTSCSSSSSSCCEEEEEECCS
T ss_pred             CCCEEEEEcCCCeEEEEcC---------CCCEEEECCCCCCCCCCCCCCCcccCeEEeC
Confidence             379999999999999999         9999999999999999998  5667888875

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B

Probab=100.00  E-value=4.2e-59  Score=446.43  Aligned_cols=299  Identities=25%  Similarity=0.348  Sum_probs=253.1

Q ss_pred             hhcceeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEE
Q 042844            9 HNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW   88 (372)
Q Consensus         9 ~~~~~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~   88 (372)
                      .+-.+++|..|+++++++|+||+||.|.+||||.+...   ......|.+++ ++.+|++|+||..|+++|+++|+||+|
T Consensus        60 ~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~---~~~~~~P~~v~-l~~~i~~va~G~~hs~alt~~G~v~~w  135 (413)
T 1a12_A           60 DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSV---EGSEMVPGKVE-LQEKVVQVSAGDSHTAALTDDGRVFLW  135 (413)
T ss_dssp             CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCS---TTGGGSCEECC-CCSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred             CeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCC---CccccCCeEec-CCCcEEEEecCCCeEEEEcCCCcEEEe
Confidence            34457899999999999999999999999999998742   23567888885 667999999999999999999999999


Q ss_pred             eC--CCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCc--------
Q 042844           89 GR--NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDIT--------  158 (372)
Q Consensus        89 G~--n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~--------  158 (372)
                      |.  |.+||||.+....  ....|.++  +...+|++|+||..|+++|+++|+||+||.|.+||||.+....        
T Consensus       136 G~~~n~~GqlG~~~~~~--~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~  211 (413)
T 1a12_A          136 GSFRDNNGVIGLLEPMK--KSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQG  211 (413)
T ss_dssp             ECEEETTEEEESSBBTB--CEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGG
T ss_pred             eCCcCCCCccCcCCccc--cccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccc
Confidence            99  9999999876542  22346655  4456899999999999999999999999999999999874321        


Q ss_pred             --ccccceEeccc-----CCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccc
Q 042844          159 --EAIVPSRVEAL-----AGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEIS  231 (372)
Q Consensus       159 --~~~~p~~i~~~-----~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (372)
                        ....|.++...     ...+|++|+||.+|++||+++|+||+||.|.++|||.....                     
T Consensus       212 ~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~---------------------  270 (413)
T 1a12_A          212 LERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTE---------------------  270 (413)
T ss_dssp             HHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCS---------------------
T ss_pred             ccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCC---------------------
Confidence              23567666543     34689999999999999999999999999999999987321                     


Q ss_pred             hhhHHHhhhhhhcccccccCCCceeceeeec---C--ccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCC-CCCCcc
Q 042844          232 SSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE---G--VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGRE-KQDMGM  305 (372)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~---~--~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~-~~~~~~  305 (372)
                                            ..+.|.+++   .  .+|++|+||..|++||+++|+||+||.|.+||||.+ +.....
T Consensus       271 ----------------------~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~  328 (413)
T 1a12_A          271 ----------------------SCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKS  328 (413)
T ss_dssp             ----------------------CEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEE
T ss_pred             ----------------------cccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCcccc
Confidence                                  123566665   2  469999999999999999999999999999999998 556667


Q ss_pred             cceeec--cccEEEecCCCceEEEEeeccccccCCCccEEEecCCCCCCccCCC--CCCCceEEec
Q 042844          306 FPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG--PDNVPLVVEG  367 (372)
Q Consensus       306 ~P~~v~--~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~--~~~~p~~i~~  367 (372)
                      .|++++  .+|++|+||.+|++++++         +|+||+||+|.+||||++.  +..+|++|+.
T Consensus       329 ~P~~v~~l~~v~~v~~G~~hs~alt~---------~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~  385 (413)
T 1a12_A          329 IPTLISRLPAVSSVACGASVGYAVTK---------DGRVFAWGMGTNYQLGTGQDEDAWSPVEMMG  385 (413)
T ss_dssp             EEEECCSSSSEEEEEECSSEEEEEET---------TSCEEEEECCTTSTTCSSSCSCEEEEEECCS
T ss_pred             CCEEecccCceeEEEECcceEEEEeC---------CCCEEEecCCCCCCCCCCCCCCcccCeEccc
Confidence            788876  589999999999999999         9999999999999999998  5566887764

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=100.00  E-value=9.4e-60  Score=447.23  Aligned_cols=300  Identities=29%  Similarity=0.492  Sum_probs=248.1

Q ss_pred             cceeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCC-CCeEEEecCCCceEEEecCCcEEEEe
Q 042844           11 HVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP-SDVTSVSAGHYHSLAVTNNGAVWAWG   89 (372)
Q Consensus        11 ~~~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~-~~i~~I~~G~~h~~~lt~~G~v~~~G   89 (372)
                      |-+....+++++++.+|+||+||.|.+||||.+.     ......|.+++.+. .+|++|+||..|+++|+++|+||+||
T Consensus         4 ~~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~-----~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG   78 (389)
T 3kci_A            4 HHHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIE-----GAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATG   78 (389)
T ss_dssp             -----------------CEEEEEECTTSTTSSCS-----CSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             cccccCcccceeECCCCeEEEeeCCCCccCCCCc-----CccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEE
Confidence            4456688999999999999999999999999876     34677888876543 37999999999999999999999999


Q ss_pred             CCCCCCCcCCCCCCCCccCCCceeecCCc--eeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEec
Q 042844           90 RNNEVQLGRGALESRATWNDPKRVEGLDQ--VNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE  167 (372)
Q Consensus        90 ~n~~gqlg~~~~~~~~~~~~p~~i~~~~~--~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~  167 (372)
                      .|.+||||.+...   ....|.+++.+..  .++++|+||..|+++|+++|+||+||.|.+||||.+.. .....|.+++
T Consensus        79 ~n~~GqLG~g~~~---~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~-~~~~~p~~v~  154 (389)
T 3kci_A           79 YGAGGRLGIGGTE---SVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNR-SPCDRPRVIE  154 (389)
T ss_dssp             CCGGGTTSSSSSC---CEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSC-CCEEEEEECG
T ss_pred             CCCCCCCCCCCcC---CccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCC-ccCcCCeEec
Confidence            9999999998765   3456777776655  45688999999999999999999999999999999865 5567899999


Q ss_pred             ccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccc
Q 042844          168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME  247 (372)
Q Consensus       168 ~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (372)
                      .+.+.+|++|+||..|++||+++|+||+||.|.++|||.....                                     
T Consensus       155 ~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~-------------------------------------  197 (389)
T 3kci_A          155 SLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE-------------------------------------  197 (389)
T ss_dssp             GGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCC-------------------------------------
T ss_pred             ccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCc-------------------------------------
Confidence            8888899999999999999999999999999999999987321                                     


Q ss_pred             cccCCCceeceeeec---CccEEEEEecC--CeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec----cccEEEe
Q 042844          248 KEKYMPIIWEPFLVE---GVEVVDIACGF--DHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN----FHPVSIS  318 (372)
Q Consensus       248 ~~~~~~~~~~p~~i~---~~~i~~I~~G~--~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~----~~i~~ia  318 (372)
                            ....|.+++   ..+|++|+||.  .|+++|+++|+||+||.|.+||||.+.......|+++.    .+|++|+
T Consensus       198 ------~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~  271 (389)
T 3kci_A          198 ------DQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVE  271 (389)
T ss_dssp             ------CEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEE
T ss_pred             ------ccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEe
Confidence                  123466665   67899999994  89999999999999999999999999988888898886    4699999


Q ss_pred             cCCCceEEEEeeccccccCCCccEEEecCCCCCCccCCC--CCCCceEEecCCCC
Q 042844          319 SGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG--PDNVPLVVEGLEGE  371 (372)
Q Consensus       319 ~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~--~~~~p~~i~~~~~~  371 (372)
                      ||.+|+++|++         +|+||+||.|.+||||++.  ....|++|+.+.++
T Consensus       272 ~G~~hs~alt~---------~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~  317 (389)
T 3kci_A          272 CGSQFSVALTK---------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGK  317 (389)
T ss_dssp             EETTEEEEEET---------TSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTC
T ss_pred             CCCCEEEEEeC---------CCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCC
Confidence            99999999999         9999999999999999998  55568888877654

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-58  Score=448.07  Aligned_cols=307  Identities=25%  Similarity=0.351  Sum_probs=253.4

Q ss_pred             hcceeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCC------------------CCCccceeecCC--CC-----C
Q 042844           10 NHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGV------------------GGDAYEPTRVPG--LP-----S   64 (372)
Q Consensus        10 ~~~~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~------------------~~~~~~p~~i~~--~~-----~   64 (372)
                      +-.+++|..|+++++++|+||+||.|.+||||.+......                  ......|.+++.  ++     .
T Consensus        69 i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~  148 (473)
T 3of7_A           69 IISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGH  148 (473)
T ss_dssp             EEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTC
T ss_pred             EEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCC
Confidence            3457899999999999999999999999999998743200                  001567888875  54     5


Q ss_pred             CeEEEecCCCceEEEecCCcEEEEeC--CCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEE
Q 042844           65 DVTSVSAGHYHSLAVTNNGAVWAWGR--NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV  142 (372)
Q Consensus        65 ~i~~I~~G~~h~~~lt~~G~v~~~G~--n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~  142 (372)
                      +|++|+||..|++||+++|+||+||.  +.+||||.+... ......|.+++.+.+.+|++|+||..|+++|+++|+||+
T Consensus       149 ~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~-~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~  227 (473)
T 3of7_A          149 KVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDK-IKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFA  227 (473)
T ss_dssp             CEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTT-BSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEE
T ss_pred             cEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCC-CccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEE
Confidence            89999999999999999999999998  678999985543 223457888888888889999999999999999999999


Q ss_pred             EeCCCCCCCCCCCCCc---ccccceEecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCC
Q 042844          143 WGKSKRGQLGLGKDIT---EAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSN  219 (372)
Q Consensus       143 ~G~n~~gqlg~~~~~~---~~~~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~  219 (372)
                      ||.|.+||||.+....   ....|.++..   .+|++|+||.+|++||+++|+||+||.|.++|||......        
T Consensus       228 wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~--------  296 (473)
T 3of7_A          228 WGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVE--------  296 (473)
T ss_dssp             EECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCC--------
T ss_pred             EeCCCCCCCCCCccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCccc--------
Confidence            9999999999985432   2456666543   5799999999999999999999999999999999873210        


Q ss_pred             cCCCCCCccccchhhHHHhhhhhhcccccccCCCceeceeeec---CccEEEEEecCCeeEEEecCCCEEEEeCCCCCcc
Q 042844          220 IDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQL  296 (372)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~---~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gql  296 (372)
                                                     .......|+++.   ..+|++|+||..|++||+++|+||+||.|.+|||
T Consensus       297 -------------------------------~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqL  345 (473)
T 3of7_A          297 -------------------------------DGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEV  345 (473)
T ss_dssp             -------------------------------TTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTT
T ss_pred             -------------------------------CCceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCcc
Confidence                                           011234577666   4689999999999999999999999999999999


Q ss_pred             CCCCCC--------------Ccccceeecc--ccEEEecCCCceEEEEeeccccccCCCccEEEecCCCCCCccCCC---
Q 042844          297 GREKQD--------------MGMFPVDINF--HPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG---  357 (372)
Q Consensus       297 G~~~~~--------------~~~~P~~v~~--~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~---  357 (372)
                      |.+...              ....|+++..  +|++|+||.+|+++|++         +|+||+||+|.+||||++.   
T Consensus       346 G~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~Ia~G~~hs~al~~---------~G~vy~wG~n~~GqLG~g~~~~  416 (473)
T 3of7_A          346 GIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQ---------NGIAYSWGFGETYAVGLGPFED  416 (473)
T ss_dssp             CCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEEEECSSEEEEEET---------TSCEEEEECCTTCTTCCCSCCS
T ss_pred             CCCccccccccccccCCceeeeccCcccCCCCceEEEEeCCCeEEEEeC---------CCcEEEeeCCCCCCCCCCCCCc
Confidence            986521              1235666653  89999999999999999         9999999999999999988   


Q ss_pred             CCCCceEEecC
Q 042844          358 PDNVPLVVEGL  368 (372)
Q Consensus       358 ~~~~p~~i~~~  368 (372)
                      +..+|++|+.+
T Consensus       417 ~~~~P~~v~~~  427 (473)
T 3of7_A          417 DTEVPTRIKNT  427 (473)
T ss_dssp             CEEEEEECCCT
T ss_pred             cccCCeEeccc
Confidence            45578888743

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B

Probab=100.00  E-value=3.9e-58  Score=439.68  Aligned_cols=306  Identities=25%  Similarity=0.409  Sum_probs=253.1

Q ss_pred             eeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEeCCC
Q 042844           13 NVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNN   92 (372)
Q Consensus        13 ~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~   92 (372)
                      .+.+..|.++++.+|+||+||.|.+||||.+...    .....|.+++. +.+|++|+||..|+++|+++|+||+||.|.
T Consensus        13 ~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~----~~~~~P~~v~~-~~~i~~va~G~~hs~~l~~~G~v~~wG~n~   87 (413)
T 1a12_A           13 KKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENV----MERKKPALVSI-PEDVVQAEAGGMHTVCLSKSGQVYSFGCND   87 (413)
T ss_dssp             CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTC----CEEEEEEEECC-SSCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred             hhhccccceeecCCCcEEEEECCCCCcCCCCCCc----cccccceEccC-CCCeEEEEeCCCeEEEEcCCCCEEEEECCC
Confidence            4566789999999999999999999999998832    23678998884 478999999999999999999999999999


Q ss_pred             CCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeC--CCCCCCCCCCCCcccccceEecccC
Q 042844           93 EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK--SKRGQLGLGKDITEAIVPSRVEALA  170 (372)
Q Consensus        93 ~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~--n~~gqlg~~~~~~~~~~p~~i~~~~  170 (372)
                      +||||.+.... .....|.++.. . .+|++|+||..|+++|+++|+||+||.  |.+||||.+........|.++  +.
T Consensus        88 ~GqLG~~~~~~-~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~  162 (413)
T 1a12_A           88 EGALGRDTSVE-GSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QL  162 (413)
T ss_dssp             TSTTCSCCCST-TGGGSCEECCC-C-SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CC
T ss_pred             CCCCCCCCCCC-ccccCCeEecC-C-CcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cC
Confidence            99999987642 23457877743 3 389999999999999999999999999  899999998765555568777  34


Q ss_pred             CCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhccccccc
Q 042844          171 GEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEK  250 (372)
Q Consensus       171 ~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (372)
                      ..+|++|+||.+|+++|+++|+||+||.|.++|||...........               ....               
T Consensus       163 ~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~---------------~~~~---------------  212 (413)
T 1a12_A          163 DVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGG---------------RQGL---------------  212 (413)
T ss_dssp             SSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCG---------------GGGH---------------
T ss_pred             CCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccc---------------cccc---------------
Confidence            5689999999999999999999999999999999987332111000               0000               


Q ss_pred             CCCceeceeeec--------CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec------cccEE
Q 042844          251 YMPIIWEPFLVE--------GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN------FHPVS  316 (372)
Q Consensus       251 ~~~~~~~p~~i~--------~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~------~~i~~  316 (372)
                        .....|+.+.        ..+|++|+||.+|++||+++|+||+||.|.+||||.++......|.++.      .+|++
T Consensus       213 --~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~  290 (413)
T 1a12_A          213 --ERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVG  290 (413)
T ss_dssp             --HHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEE
T ss_pred             --cccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEE
Confidence              0011233222        3679999999999999999999999999999999999988888898885      34999


Q ss_pred             EecCCCceEEEEeeccccccCCCccEEEecCCCCCCccCCC---CCCCceEEecCC
Q 042844          317 ISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG---PDNVPLVVEGLE  369 (372)
Q Consensus       317 ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~---~~~~p~~i~~~~  369 (372)
                      |+||.+|+++|++         +|+||+||.|.+||||++.   ....|++|+.++
T Consensus       291 ia~G~~hs~al~~---------~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~  337 (413)
T 1a12_A          291 FSGGQHHTVCMDS---------EGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP  337 (413)
T ss_dssp             EEECSSEEEEEET---------TSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS
T ss_pred             EecccceEEEEeC---------CCCEEEeeCCCCCccCCCCCCccccCCEEecccC
Confidence            9999999999999         9999999999999999985   445788887654

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=100.00  E-value=1.1e-56  Score=431.25  Aligned_cols=309  Identities=22%  Similarity=0.328  Sum_probs=252.7

Q ss_pred             hcceeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEe
Q 042844           10 NHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWG   89 (372)
Q Consensus        10 ~~~~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G   89 (372)
                      ...++++..|.++++++|+||+||.|.+||||.+...    .....|.+++.+ .+|++|+||..|+++|+++|+||+||
T Consensus        26 ~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~----~~~~~p~~v~~l-~~v~~va~G~~h~~~l~~~G~v~~wG  100 (423)
T 3mvd_K           26 RARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDI----LERKRLSPVAGI-PDAVDISAGGMHNLVLTKSGDIYSFG  100 (423)
T ss_dssp             ---CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSC----CEEEEEEECCSC-SSEEEEEECSSEEEEEETTSCEEEEE
T ss_pred             eeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCC----ccCcCCeEccCC-CCceEEeeCCCeEEEEeCCCeEEEeE
Confidence            3457899999999999999999999999999998732    356789999877 57999999999999999999999999


Q ss_pred             CCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeC--CCCCCCCCCCCCcccccceEec
Q 042844           90 RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGK--SKRGQLGLGKDITEAIVPSRVE  167 (372)
Q Consensus        90 ~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~--n~~gqlg~~~~~~~~~~p~~i~  167 (372)
                      .|.+||||.+.... .....|.++...  .+|++|+||..|+++|+++|+||+||.  |.+||||.+.. .....|  +.
T Consensus       101 ~n~~GqLG~~~~~~-~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~-~~~~~p--~~  174 (423)
T 3mvd_K          101 CNDEGALGRDTSED-GSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTID-GNKRTP--ID  174 (423)
T ss_dssp             CCSSSTTCSCCCST-TSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTT-BCEEEE--EE
T ss_pred             CCCCcCCCCCCcCC-ccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCC-CCCcee--eE
Confidence            99999999988752 234677777643  379999999999999999999999999  99999998755 333444  44


Q ss_pred             ccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccc
Q 042844          168 ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGME  247 (372)
Q Consensus       168 ~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (372)
                      .+...+|++|+||.+|++||+++|+||+||.|.++|||.........+..                              
T Consensus       175 ~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~------------------------------  224 (423)
T 3mvd_K          175 LMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGR------------------------------  224 (423)
T ss_dssp             SSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCST------------------------------
T ss_pred             ecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccc------------------------------
Confidence            45667899999999999999999999999999999999874422111100                              


Q ss_pred             cccCCCceeceeeec---CccEEEEEecCCeeEEE-ecCCCEEEEeCCCCCccCCCCCCC--cccceeec-cccEEEecC
Q 042844          248 KEKYMPIIWEPFLVE---GVEVVDIACGFDHSLVL-GRNGVLLSCGSNVYGQLGREKQDM--GMFPVDIN-FHPVSISSG  320 (372)
Q Consensus       248 ~~~~~~~~~~p~~i~---~~~i~~I~~G~~h~~al-t~~G~vy~wG~n~~gqlG~~~~~~--~~~P~~v~-~~i~~ia~G  320 (372)
                        ........|.++.   ..+|++|+||.+|++++ +++|+||+||.|.++|||.+....  ...|+++. .+|++|+||
T Consensus       225 --~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G  302 (423)
T 3mvd_K          225 --RGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGG  302 (423)
T ss_dssp             --TTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEEC
T ss_pred             --cccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcc
Confidence              0011123466555   67899999999999999 699999999999999999965433  34566554 689999999


Q ss_pred             CCceEEEEeeccccccCCCccEEEecCCCCCCccCCCC---CCCceEEecCCC
Q 042844          321 LGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGP---DNVPLVVEGLEG  370 (372)
Q Consensus       321 ~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~~---~~~p~~i~~~~~  370 (372)
                      .+|+++|++         +|+||+||+|.+||||.+..   ...|++|+.+.+
T Consensus       303 ~~ht~alt~---------~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~  346 (423)
T 3mvd_K          303 QHHTVILTT---------DLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE  346 (423)
T ss_dssp             SSEEEEEET---------TCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCS
T ss_pred             cCeEEEEeC---------CCcEEEEECCCCCCCCCCCccccccCceEeccCCC
Confidence            999999999         99999999999999999983   246888877654

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-57  Score=440.09  Aligned_cols=293  Identities=25%  Similarity=0.389  Sum_probs=245.9

Q ss_pred             eeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCC---CCeEEEecCCCceEEEecCCcEEEEeCC
Q 042844           15 LTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLP---SDVTSVSAGHYHSLAVTNNGAVWAWGRN   91 (372)
Q Consensus        15 ~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~---~~i~~I~~G~~h~~~lt~~G~v~~~G~n   91 (372)
                      ..-+|+++++.+++||+||.|.+||||.+....  ..+..+|.+++.+.   .+|++|+||..|++||+++|+||+||.|
T Consensus        17 ~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~--~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n   94 (473)
T 3of7_A           17 EDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAK--NKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCN   94 (473)
T ss_dssp             GGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGG--GGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred             ccccccccCCCCccEEEEcCCCCCccCCCCCcc--cccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECC
Confidence            566788899999999999999999999997421  23467888887663   3799999999999999999999999999


Q ss_pred             CCCCCcCCCCCCCC--------------------ccCCCceeec--C----CceeEEEEeecCcEEEEEeCCCcEEEEeC
Q 042844           92 NEVQLGRGALESRA--------------------TWNDPKRVEG--L----DQVNVCAAFASGVVSSAIGDDGSLWVWGK  145 (372)
Q Consensus        92 ~~gqlg~~~~~~~~--------------------~~~~p~~i~~--~----~~~~i~~i~~g~~~~~~lt~~g~v~~~G~  145 (372)
                      .+||||.+......                    ....|.+++.  +    +..+|++|+||..|+++|+++|+||+||.
T Consensus        95 ~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~  174 (473)
T 3of7_A           95 DVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGT  174 (473)
T ss_dssp             TTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred             CCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeC
Confidence            99999998765310                    1346777764  4    35789999999999999999999999998


Q ss_pred             --CCCCCCCCCCC-CcccccceEecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCC
Q 042844          146 --SKRGQLGLGKD-ITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR  222 (372)
Q Consensus       146 --n~~gqlg~~~~-~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~  222 (372)
                        +.+||||.+.. ......|.+++.+.+.+|++|+||.+|++||+++|+||+||.|.++|||........         
T Consensus       175 n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~---------  245 (473)
T 3of7_A          175 FRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFR---------  245 (473)
T ss_dssp             EEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGT---------
T ss_pred             CcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCcccccc---------
Confidence              67899998543 345678999988888889999999999999999999999999999999987321100         


Q ss_pred             CCCCccccchhhHHHhhhhhhcccccccCCCceeceeeecCccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCC
Q 042844          223 SSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQD  302 (372)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~  302 (372)
                                                    .....|..+...+|++|+||.+|++||+++|+||+||.|.+||||.+...
T Consensus       246 ------------------------------~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~  295 (473)
T 3of7_A          246 ------------------------------LKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDV  295 (473)
T ss_dssp             ------------------------------TTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCC
T ss_pred             ------------------------------ccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcc
Confidence                                          01124666666789999999999999999999999999999999998754


Q ss_pred             ----Ccccceeec----cccEEEecCCCceEEEEeeccccccCCCccEEEecCCCCCCccCCC
Q 042844          303 ----MGMFPVDIN----FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG  357 (372)
Q Consensus       303 ----~~~~P~~v~----~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~  357 (372)
                          ....|+++.    .+|++|+||.+|+++|++         +|+||+||.|.+||||++.
T Consensus       296 ~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~---------~G~v~~wG~n~~GqLG~~~  349 (473)
T 3of7_A          296 EDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQ---------DGDLYSCGRLDMFEVGIPK  349 (473)
T ss_dssp             CTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEET---------TSCEEEEEECTTCTTCCCG
T ss_pred             cCCceeeccccccccCCccEEEEEeCCCeEEEEeC---------CCeEEEEECCCCCccCCCc
Confidence                234677765    579999999999999999         9999999999999999875

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=100.00  E-value=1e-48  Score=354.43  Aligned_cols=233  Identities=28%  Similarity=0.380  Sum_probs=200.6

Q ss_pred             hhhhhcceeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcE
Q 042844            6 SVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAV   85 (372)
Q Consensus         6 ~~~~~~~~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v   85 (372)
                      ...++..+++|..|+++++ +|+||+||.|.+||||.+.             +.   ..+|++|+||..|+++|+ ||+|
T Consensus        22 ~~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~-------------~~---~~~i~~ia~G~~hs~~l~-~G~v   83 (282)
T 3qhy_B           22 AQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA-------------AT---QSGVDAIAAGNYHSLALK-DGEV   83 (282)
T ss_dssp             GSSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG-------------GG---GSCCCEEEECSSEEEEEE-TTEE
T ss_pred             ccCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc-------------cC---CCCEEEEEeCCCEEEEEE-CCEE
Confidence            3445667889999999998 9999999999999998633             11   258999999999999996 9999


Q ss_pred             EEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceE
Q 042844           86 WAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR  165 (372)
Q Consensus        86 ~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~  165 (372)
                      |+||.|.++|||.           |..+.    .+|++|+||..|+++|+ +|+||+||.|.+||||...          
T Consensus        84 ~~wG~n~~Gqlg~-----------P~~~~----~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~----------  137 (282)
T 3qhy_B           84 IAWGGNEDGQTTV-----------PAEAR----SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA----------  137 (282)
T ss_dssp             EEEECCTTSTTCC-----------CGGGS----SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG----------
T ss_pred             EEeeCCCCCCCCC-----------CcccC----CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc----------
Confidence            9999999999985           33222    37999999999999999 9999999999999998421          


Q ss_pred             ecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcc
Q 042844          166 VEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEG  245 (372)
Q Consensus       166 i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (372)
                         ....+|++|+||.+|+++|+ +|+||+||.|.++||+..                                      
T Consensus       138 ---~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p--------------------------------------  175 (282)
T 3qhy_B          138 ---EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVP--------------------------------------  175 (282)
T ss_dssp             ---GGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCC--------------------------------------
T ss_pred             ---cCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCc--------------------------------------
Confidence               11246999999999999999 899999999999999743                                      


Q ss_pred             cccccCCCceeceeeecCccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeeccccEEEecCCCceE
Q 042844          246 MEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSL  325 (372)
Q Consensus       246 ~~~~~~~~~~~~p~~i~~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~~~i~~ia~G~~~s~  325 (372)
                                   ..+ ..+|++|+||.+|++|| ++|+||+||.|.++|||.        |.+...+|++|+||.+|++
T Consensus       176 -------------~~~-~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~--------p~~~~~~v~~i~~G~~h~~  232 (282)
T 3qhy_B          176 -------------AEA-QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTV--------PTEALSGVSAIASGEWYSL  232 (282)
T ss_dssp             -------------GGG-GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCC--------CGGGGSSCCEEEECSSCEE
T ss_pred             -------------eec-CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCC--------CcccCCCceEEEcCCCEEE
Confidence                         001 35699999999999999 899999999999999985        3444568999999999999


Q ss_pred             EEEeeccccccCCCccEEEecCCCCCCccCCC
Q 042844          326 AICEVRSSNVTGGARGIVSWGWNRSSQLGRMG  357 (372)
Q Consensus       326 ~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~  357 (372)
                      +++          +|+||+||+|.+||++...
T Consensus       233 al~----------~g~v~~wG~n~~gq~~v~~  254 (282)
T 3qhy_B          233 ALK----------NGKVIAWGSSRTAPSSVQS  254 (282)
T ss_dssp             EEE----------TTEEEEESTTCCCCGGGSS
T ss_pred             EEE----------CCEEEEecCCCCccccCCC
Confidence            999          8999999999999999854

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=100.00  E-value=1.7e-45  Score=333.32  Aligned_cols=214  Identities=28%  Similarity=0.438  Sum_probs=182.3

Q ss_pred             CcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCc
Q 042844           27 TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT  106 (372)
Q Consensus        27 g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~  106 (372)
                      .+||+||.|...++..              .+++.+ .+|++|+||..|+++|+ ||+||+||.|.+||||...      
T Consensus         2 ~~v~~WG~n~~~~~~~--------------~p~~~~-~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~------   59 (282)
T 3qhy_B            2 TSVVAWGGNNDWGEAT--------------VPAEAQ-SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA------   59 (282)
T ss_dssp             CEEEEECSCCTTSTTC--------------CCGGGS-SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG------
T ss_pred             eEEEEeCCCCCcCccc--------------CCcccc-CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc------
Confidence            3699999986544322              222323 48999999999999998 9999999999999999521      


Q ss_pred             cCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCCeEEE
Q 042844          107 WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA  186 (372)
Q Consensus       107 ~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~  186 (372)
                           .    ...+|++|+||..|+++|+ +|+||+||.|.+||||.         |.++.    .+|++|+||.+|+++
T Consensus        60 -----~----~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~---------P~~~~----~~v~~ia~G~~hs~a  116 (282)
T 3qhy_B           60 -----A----TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV---------PAEAR----SGVDAIAAGAWASYA  116 (282)
T ss_dssp             -----G----GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC---------CGGGS----SSEEEEEEETTEEEE
T ss_pred             -----c----CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC---------CcccC----CCeEEEECcCCEEEE
Confidence                 1    1237899999999999996 99999999999999985         33322    479999999999999


Q ss_pred             EeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccccccCCCceeceeeecCccE
Q 042844          187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV  266 (372)
Q Consensus       187 lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~i  266 (372)
                      |+ +|+||+||.|.++|||...                                                 +   ...+|
T Consensus       117 l~-~G~v~~wG~n~~gqlg~~~-------------------------------------------------~---~~~~i  143 (282)
T 3qhy_B          117 LK-DGKVIAWGDDSDGQTTVPA-------------------------------------------------E---AQSGV  143 (282)
T ss_dssp             EE-TTEEEEEECCTTSTTSCCG-------------------------------------------------G---GGSSE
T ss_pred             Ee-CCeEEEecCCCCCcCCCCc-------------------------------------------------c---CCCCe
Confidence            99 9999999999999997540                                                 0   03569


Q ss_pred             EEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeeccccEEEecCCCceEEEEeeccccccCCCccEEEec
Q 042844          267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWG  346 (372)
Q Consensus       267 ~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG  346 (372)
                      ++|+||..|+++|+ +|+||+||.|.++|||        .|.++..+|++|+||.+|+++| +         +|+||+||
T Consensus       144 ~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg--------~p~~~~~~v~~i~~G~~hs~al-~---------~G~v~~wG  204 (282)
T 3qhy_B          144 TALDGGVYTALAVK-NGGVIAWGDNYFGQTT--------VPAEAQSGVDDVAGGIFHSLAL-K---------DGKVIAWG  204 (282)
T ss_dssp             EEEEECSSEEEEEE-TTEEEEEECCTTSTTS--------CCGGGGSSEEEEEECSSEEEEE-E---------TTEEEEEE
T ss_pred             EEEEcccCEEEEEE-CCEEEEecCCCCCCCC--------CceecCCCeEEEEecCCEEEEE-E---------CCeEEEEE
Confidence            99999999999999 8999999999999998        4666678999999999999999 9         99999999


Q ss_pred             CCCCCCccCCC
Q 042844          347 WNRSSQLGRMG  357 (372)
Q Consensus       347 ~n~~gqLG~~~  357 (372)
                      .|.+||||.+.
T Consensus       205 ~n~~gqlg~p~  215 (282)
T 3qhy_B          205 DNRYKQTTVPT  215 (282)
T ss_dssp             CCTTSTTCCCG
T ss_pred             CCCCCCCCCCc
Confidence            99999999876

>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}

Probab=96.19  E-value=0.016  Score=49.29  Aligned_cols=71  Identities=14%  Similarity=0.272  Sum_probs=58.0

Q ss_pred             eEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCCeEEEEeCCCcEEEEeCC
Q 042844          120 NVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGYS  199 (372)
Q Consensus       120 ~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n  199 (372)
                      .+-.|+-...|++++--+++|+.||.+..||+-....    .          .+..++.+|+++++-+..-+.+-.||..
T Consensus       310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t----a----------gPfla~~AG~~fTVTVn~~nyv~FWGDS  375 (400)
T 4gbf_A          310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH----A----------GPYIQLAAGHNFTVTVNTLNQVMFWGDS  375 (400)
T ss_dssp             CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG----G----------CCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred             ccccccccccceEEEecCceeEEeccCCCCceecCCC----c----------chHHhHhccCCeEEEEeceeeEEEecCC
Confidence            4667777888999999999999999999999865322    1          2488999999999999999999999987


Q ss_pred             CCCCC
Q 042844          200 ADGRI  204 (372)
Q Consensus       200 ~~gql  204 (372)
                      ....|
T Consensus       376 PDNSL  380 (400)
T 4gbf_A          376 PDNSL  380 (400)
T ss_dssp             TTSTT
T ss_pred             CCcce
Confidence            65544

>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}

Probab=95.88  E-value=0.017  Score=49.23  Aligned_cols=72  Identities=17%  Similarity=0.182  Sum_probs=60.7

Q ss_pred             CCeEEEecCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEE
Q 042844           64 SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVW  143 (372)
Q Consensus        64 ~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~  143 (372)
                      ..|..|+....|++++--|++|++||.+..||+-.....                -+..++.+|..+++-++.-..+-.|
T Consensus       309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta----------------gPfla~~AG~~fTVTVn~~nyv~FW  372 (400)
T 4gbf_A          309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA----------------GPYIQLAAGHNFTVTVNTLNQVMFW  372 (400)
T ss_dssp             SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG----------------CCEEEEEECSSEEEEEETTCCEEEE
T ss_pred             CccccccccccceEEEecCceeEEeccCCCCceecCCCc----------------chHHhHhccCCeEEEEeceeeEEEe
Confidence            468999999999999999999999999999998764443                2577899999999999999999999


Q ss_pred             eCCCCCCC
Q 042844          144 GKSKRGQL  151 (372)
Q Consensus       144 G~n~~gql  151 (372)
                      |......|
T Consensus       373 GDSPDNSL  380 (400)
T 4gbf_A          373 GDSPDNSL  380 (400)
T ss_dssp             ECCTTSTT
T ss_pred             cCCCCcce
Confidence            98765443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=95.62  E-value=1.4  Score=40.80  Aligned_cols=145  Identities=13%  Similarity=0.119  Sum_probs=87.5

Q ss_pred             eeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEeCCCC
Q 042844           14 VLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNE   93 (372)
Q Consensus        14 ~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~   93 (372)
                      +.....++.-..||.|++|-...                ......+..-...|..++......+.-..||.|..|-....
T Consensus       140 ~~d~~~l~~g~~dg~i~iwd~~~----------------~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~  203 (435)
T 1p22_A          140 QYDDQKIVSGLRDNTIKIWDKNT----------------LECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG  203 (435)
T ss_dssp             ECCSSEEEEEESSSCEEEEESSS----------------CCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSC
T ss_pred             EECCCEEEEEeCCCeEEEEeCCC----------------CeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCC
Confidence            33455566667778888885321                01112233333578888887777777788999999975432


Q ss_pred             CCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCc
Q 042844           94 VQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK  173 (372)
Q Consensus        94 gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~  173 (372)
                      ..+              ..+. .....|..+.......+.-+.||.|..|-.....          ...+..........
T Consensus       204 ~~~--------------~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~  258 (435)
T 1p22_A          204 EML--------------NTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT----------DITLRRVLVGHRAA  258 (435)
T ss_dssp             CEE--------------EEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSS----------CCEEEEEECCCSSC
T ss_pred             cEE--------------EEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCC----------CceeeeEecCCCCc
Confidence            110              0111 1123566777677777888899999999643211          01111111122346


Q ss_pred             EEEEEecCCeEEEEeCCCcEEEEeCC
Q 042844          174 IVKVSFGWGHALAQTEDGKLFGWGYS  199 (372)
Q Consensus       174 i~~I~~g~~~~~~lt~~g~vy~wG~n  199 (372)
                      |..++......++-+.+|.|..|-..
T Consensus       259 v~~~~~~~~~l~s~~~dg~i~vwd~~  284 (435)
T 1p22_A          259 VNVVDFDDKYIVSASGDRTIKVWNTS  284 (435)
T ss_dssp             EEEEEEETTEEEEEETTSEEEEEETT
T ss_pred             EEEEEeCCCEEEEEeCCCeEEEEECC
Confidence            88888878888888999999999764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=95.30  E-value=1.8  Score=40.04  Aligned_cols=231  Identities=10%  Similarity=0.073  Sum_probs=127.8

Q ss_pred             eeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEeCCCCC
Q 042844           15 LTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEV   94 (372)
Q Consensus        15 ~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~g   94 (372)
                      .....++.-..||.|.+|-.... +               ....+..-...|..++......+.-..||.|..|-.....
T Consensus       181 ~~~~~l~sg~~dg~i~vwd~~~~-~---------------~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~  244 (435)
T 1p22_A          181 YDERVIITGSSDSTVRVWDVNTG-E---------------MLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT  244 (435)
T ss_dssp             CCSSEEEEEETTSCEEEEESSSC-C---------------EEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSS
T ss_pred             ECCCEEEEEcCCCeEEEEECCCC-c---------------EEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCC
Confidence            34556666677888888865321 1               1112222335688888888888888899999999753221


Q ss_pred             CCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcE
Q 042844           95 QLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI  174 (372)
Q Consensus        95 qlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i  174 (372)
                      .+            .+..........|..+.......+.-+.||.|..|-....-            ....+. .....|
T Consensus       245 ~~------------~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~------------~~~~~~-~~~~~v  299 (435)
T 1p22_A          245 DI------------TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE------------FVRTLN-GHKRGI  299 (435)
T ss_dssp             CC------------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC------------EEEEEE-CCSSCE
T ss_pred             Cc------------eeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc------------EEEEEc-CCCCcE
Confidence            10            00011111223566666667777778889999999643210            011111 112457


Q ss_pred             EEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccccccCCCc
Q 042844          175 VKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPI  254 (372)
Q Consensus       175 ~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (372)
                      ..++......++-..+|.|..|-......+                                                  
T Consensus       300 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~--------------------------------------------------  329 (435)
T 1p22_A          300 ACLQYRDRLVVSGSSDNTIRLWDIECGACL--------------------------------------------------  329 (435)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEETTTCCEE--------------------------------------------------
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCCEE--------------------------------------------------
Confidence            777777788888889999999976432111                                                  


Q ss_pred             eeceeeec--CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCccccee-e---ccccEEEecCCCceEEEE
Q 042844          255 IWEPFLVE--GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVD-I---NFHPVSISSGLGHSLAIC  328 (372)
Q Consensus       255 ~~~p~~i~--~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~-v---~~~i~~ia~G~~~s~~l~  328 (372)
                          ..+.  ...|..++....+.+.-..||.|.+|-...........   ...+.. +   ...|..++......+.-.
T Consensus       330 ----~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~h~~~v~~l~~~~~~l~s~s  402 (435)
T 1p22_A          330 ----RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA---GTLCLRTLVEHSGRVFRLQFDEFQIVSSS  402 (435)
T ss_dssp             ----EEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCT---TTTEEEEECCCSSCCCCEEECSSCEEECC
T ss_pred             ----EEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccc---cchheeeccCCCCCeEEEEeCCCEEEEEe
Confidence                0011  34567777766666666789999999743211110000   000111 1   145666666444444445


Q ss_pred             eeccccccCCCccEEEecCCCCCC
Q 042844          329 EVRSSNVTGGARGIVSWGWNRSSQ  352 (372)
Q Consensus       329 ~~~~~~~~~~~g~v~~wG~n~~gq  352 (372)
                      .         ||.|..|--....+
T Consensus       403 ~---------Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          403 H---------DDTILIWDFLNDPA  417 (435)
T ss_dssp             S---------SSEEEEEC------
T ss_pred             C---------CCEEEEEECCCCCC
Confidence            5         89999997665433

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.43  E-value=1.4  Score=44.00  Aligned_cols=19  Identities=16%  Similarity=0.181  Sum_probs=14.7

Q ss_pred             cCCeeEEEecCCCEEEEeC
Q 042844          272 GFDHSLVLGRNGVLLSCGS  290 (372)
Q Consensus       272 G~~h~~alt~~G~vy~wG~  290 (372)
                      ...|++++..++++|++|-
T Consensus       597 R~~~~~~~~~~~~iyv~GG  615 (695)
T 2zwa_A          597 RYGSQIKYITPRKLLIVGG  615 (695)
T ss_dssp             CBSCEEEEEETTEEEEECC
T ss_pred             cccceEEEeCCCEEEEECC
Confidence            3567777777799999984

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=93.41  E-value=4.8  Score=37.14  Aligned_cols=72  Identities=4%  Similarity=-0.068  Sum_probs=38.9

Q ss_pred             ccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeeccccEEEecCCCceEEEEeeccccccCCCccEE
Q 042844          264 VEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIV  343 (372)
Q Consensus       264 ~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~  343 (372)
                      ..+..++......++-..+|.|..|-......+..-.     .+..-...|..++......+.-..         ||.|.
T Consensus       320 ~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~l~s~~~---------dg~v~  385 (445)
T 2ovr_B          320 SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ-----GPNKHQSAVTCLQFNKNFVITSSD---------DGTVK  385 (445)
T ss_dssp             SCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEEC-----STTSCSSCEEEEEECSSEEEEEET---------TSEEE
T ss_pred             ccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEc-----cCCCCCCCEEEEEECCCEEEEEeC---------CCeEE
Confidence            3455555556666667789999999754321111000     000012345566665555555555         77888


Q ss_pred             EecCCC
Q 042844          344 SWGWNR  349 (372)
Q Consensus       344 ~wG~n~  349 (372)
                      .|-...
T Consensus       386 iwd~~~  391 (445)
T 2ovr_B          386 LWDLKT  391 (445)
T ss_dssp             EEETTT
T ss_pred             EEECCC
Confidence            885443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=92.60  E-value=8.6  Score=37.90  Aligned_cols=70  Identities=14%  Similarity=0.006  Sum_probs=38.2

Q ss_pred             CCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec---cccEEEe----cCCCceE-EEEeeccccccCCCccEEE
Q 042844          273 FDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN---FHPVSIS----SGLGHSL-AICEVRSSNVTGGARGIVS  344 (372)
Q Consensus       273 ~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~---~~i~~ia----~G~~~s~-~l~~~~~~~~~~~~g~v~~  344 (372)
                      ..|.+++..+|+||+.|-...+.. .........+...+   ..+..+.    .-..|+. ++..         +|+||+
T Consensus       457 ~~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~---------dg~v~v  526 (656)
T 1k3i_A          457 TFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLP---------DGRVFN  526 (656)
T ss_dssp             BSCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECT---------TSCEEE
T ss_pred             ccCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCC---------CcEEEe
Confidence            357777777999999995443321 11111111122211   2233332    2345664 4557         999999


Q ss_pred             ecCCCCCC
Q 042844          345 WGWNRSSQ  352 (372)
Q Consensus       345 wG~n~~gq  352 (372)
                      .|.+.++.
T Consensus       527 ~GG~~~~~  534 (656)
T 1k3i_A          527 GGGGLCGD  534 (656)
T ss_dssp             EECCCCTT
T ss_pred             cCCCCCCC
Confidence            99987653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=91.80  E-value=7.8  Score=35.65  Aligned_cols=141  Identities=9%  Similarity=0.038  Sum_probs=85.0

Q ss_pred             eeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEeCCCC
Q 042844           14 VLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNE   93 (372)
Q Consensus        14 ~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~   93 (372)
                      ......++.-..||.|++|-.... +               ....+..-...|..++......+.-..||.|..|-....
T Consensus       126 ~~~g~~l~sg~~dg~i~vwd~~~~-~---------------~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~  189 (445)
T 2ovr_B          126 QFCGNRIVSGSDDNTLKVWSAVTG-K---------------CLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG  189 (445)
T ss_dssp             EEETTEEEEEETTSCEEEEETTTC-C---------------EEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT
T ss_pred             EEcCCEEEEEECCCcEEEEECCCC-c---------------EEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC
Confidence            334455666678888888864321 1               111222233467778777777777888999999975321


Q ss_pred             CCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCc
Q 042844           94 VQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEK  173 (372)
Q Consensus        94 gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~  173 (372)
                      ..+              ..+. .....|..+.......+.-+.||.|+.|-.....            ....+. .....
T Consensus       190 ~~~--------------~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~------------~~~~~~-~~~~~  241 (445)
T 2ovr_B          190 ECI--------------HTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ------------CLHVLM-GHVAA  241 (445)
T ss_dssp             EEE--------------EEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCC------------EEEEEE-CCSSC
T ss_pred             cEE--------------EEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCc------------EEEEEc-CCccc
Confidence            110              0111 1122466666667777888899999999643210            000111 12245


Q ss_pred             EEEEEecCCeEEEEeCCCcEEEEeC
Q 042844          174 IVKVSFGWGHALAQTEDGKLFGWGY  198 (372)
Q Consensus       174 i~~I~~g~~~~~~lt~~g~vy~wG~  198 (372)
                      |..++......++-+.+|.|+.|-.
T Consensus       242 v~~~~~~~~~l~~~~~dg~i~iwd~  266 (445)
T 2ovr_B          242 VRCVQYDGRRVVSGAYDFMVKVWDP  266 (445)
T ss_dssp             EEEEEECSSCEEEEETTSCEEEEEG
T ss_pred             EEEEEECCCEEEEEcCCCEEEEEEC
Confidence            7777777777888888999999975

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=91.14  E-value=7.4  Score=34.14  Aligned_cols=145  Identities=9%  Similarity=0.065  Sum_probs=77.1

Q ss_pred             eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCC------ceEEEecCCcEEEEeC
Q 042844           17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHY------HSLAVTNNGAVWAWGR   90 (372)
Q Consensus        17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~------h~~~lt~~G~v~~~G~   90 (372)
                      ...+++-..++.|.+|-......+           .......-+.....|..++....      ..+.-..||.|..|-.
T Consensus        34 ~~~~~~~~~~~~v~vw~~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~  102 (366)
T 3k26_A           34 DPLVFATVGSNRVTLYECHSQGEI-----------RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINP  102 (366)
T ss_dssp             SCEEEEEEETTEEEEEEECGGGCE-----------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECT
T ss_pred             CceEEEECCCCEEEEEEcCCCcEE-----------EeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEc
Confidence            455666677888888865432111           11111111112245666666544      4455678899999964


Q ss_pred             CCCCCCcCCCCCCCCccCCCceeecCCceeEEEEee---cCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEec
Q 042844           91 NNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA---SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVE  167 (372)
Q Consensus        91 n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~---g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~  167 (372)
                      .....              ...+.. ....|..+..   .....+.-+.||.|+.|-....            .....+.
T Consensus       103 ~~~~~--------------~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~  155 (366)
T 3k26_A          103 ITMQC--------------IKHYVG-HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD------------TLVAIFG  155 (366)
T ss_dssp             TTCCE--------------EEEEES-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT------------EEEEEEC
T ss_pred             hhceE--------------eeeecC-CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC------------eEEEEec
Confidence            32110              111111 1224555544   3455666778999999964221            0111111


Q ss_pred             --ccCCCcEEEEEec--CCeEEEEeCCCcEEEEeCC
Q 042844          168 --ALAGEKIVKVSFG--WGHALAQTEDGKLFGWGYS  199 (372)
Q Consensus       168 --~~~~~~i~~I~~g--~~~~~~lt~~g~vy~wG~n  199 (372)
                        ......|..++..  ....+.-..+|.|+.|-..
T Consensus       156 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  191 (366)
T 3k26_A          156 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN  191 (366)
T ss_dssp             STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred             ccccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence              1123457777765  3456666788999999764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=89.87  E-value=9.9  Score=33.51  Aligned_cols=112  Identities=16%  Similarity=0.170  Sum_probs=60.7

Q ss_pred             CCCeEEEecC----CCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeec----CcEEEEE
Q 042844           63 PSDVTSVSAG----HYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS----GVVSSAI  134 (372)
Q Consensus        63 ~~~i~~I~~G----~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g----~~~~~~l  134 (372)
                      ...|..++..    ....+.-..||.|..|-.....             ..+..........|..++..    ....+.-
T Consensus        55 ~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  121 (379)
T 3jrp_A           55 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR-------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVA  121 (379)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE-------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred             CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc-------------eeEeeeecCCCcceEEEEeCCCCCCCEEEEe
Confidence            3568888765    4555666789999999643210             00111111112234454444    3456777


Q ss_pred             eCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEec---------------CCeEEEEeCCCcEEEEeC
Q 042844          135 GDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG---------------WGHALAQTEDGKLFGWGY  198 (372)
Q Consensus       135 t~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g---------------~~~~~~lt~~g~vy~wG~  198 (372)
                      +.+|.|..|-......          ..+..+. .....|..++..               ....++-..+|.|+.|-.
T Consensus       122 ~~d~~i~v~d~~~~~~----------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  189 (379)
T 3jrp_A          122 SSDGKVSVVEFKENGT----------TSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY  189 (379)
T ss_dssp             ETTSEEEEEECCTTSC----------CCEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEE
T ss_pred             cCCCcEEEEecCCCCc----------eeeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEe
Confidence            8899999996532110          1111111 122346666654               345666678899999964

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=89.72  E-value=11  Score=34.00  Aligned_cols=141  Identities=13%  Similarity=0.039  Sum_probs=78.7

Q ss_pred             eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCC--CceEEEecCCcEEEEeCCCCC
Q 042844           17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGH--YHSLAVTNNGAVWAWGRNNEV   94 (372)
Q Consensus        17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~--~h~~~lt~~G~v~~~G~n~~g   94 (372)
                      ...+++...++.|++|-.... +             ...-.... -...|..++...  .+.++-..||.|..|-.....
T Consensus       103 ~~~l~~~~~d~~v~lw~~~~~-~-------------~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~  167 (401)
T 4aez_A          103 NLNVVAVALERNVYVWNADSG-S-------------VSALAETD-ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT  167 (401)
T ss_dssp             TTSEEEEEETTEEEEEETTTC-C-------------EEEEEECC-TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             CCCEEEEECCCeEEEeeCCCC-c-------------EeEeeecC-CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe
Confidence            345667778999999976431 1             11111111 224566666543  344555678999999753321


Q ss_pred             CCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcE
Q 042844           95 QLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKI  174 (372)
Q Consensus        95 qlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i  174 (372)
                      .+              ..+. .....|..++......+.-+.+|.|+.|-....+           .....+. .....|
T Consensus       168 ~~--------------~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~-~~~~~v  220 (401)
T 4aez_A          168 KL--------------RTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN-----------HQIGTLQ-GHSSEV  220 (401)
T ss_dssp             EE--------------EEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-----------CEEEEEE-CCSSCE
T ss_pred             EE--------------EEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCc-----------ceeeEEc-CCCCCe
Confidence            10              1111 1223566666667777788899999999653211           0011111 112356


Q ss_pred             EEEEec--CCeEEEEeCCCcEEEEeCC
Q 042844          175 VKVSFG--WGHALAQTEDGKLFGWGYS  199 (372)
Q Consensus       175 ~~I~~g--~~~~~~lt~~g~vy~wG~n  199 (372)
                      ..++..  ....+.-+.+|.|+.|-..
T Consensus       221 ~~~~~~~~~~~l~s~~~d~~v~iwd~~  247 (401)
T 4aez_A          221 CGLAWRSDGLQLASGGNDNVVQIWDAR  247 (401)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence            666664  3455566778999999764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=89.48  E-value=9.7  Score=32.88  Aligned_cols=107  Identities=9%  Similarity=0.128  Sum_probs=54.7

Q ss_pred             CCeEEEecCC--CceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEee--cCcEEEEEeCCCc
Q 042844           64 SDVTSVSAGH--YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA--SGVVSSAIGDDGS  139 (372)
Q Consensus        64 ~~i~~I~~G~--~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~g~  139 (372)
                      ..|..++...  .+.+.-..+|.|+.|-......              ...+.. ....+..+..  .....+.-+.+|.
T Consensus       142 ~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~--------------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~  206 (337)
T 1gxr_A          142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL--------------VRQFQG-HTDGASCIDISNDGTKLWTGGLDNT  206 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--------------EEEECC-CSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce--------------eeeeec-ccCceEEEEECCCCCEEEEEecCCc
Confidence            4566666543  4445566789999997532110              011111 1123444443  3345566678899


Q ss_pred             EEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEec--CCeEEEEeCCCcEEEEeCC
Q 042844          140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFG--WGHALAQTEDGKLFGWGYS  199 (372)
Q Consensus       140 v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g--~~~~~~lt~~g~vy~wG~n  199 (372)
                      |+.|-....          .  ....+.  ....+..++..  ....++-+.+|.|+.|-..
T Consensus       207 i~~~d~~~~----------~--~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~  254 (337)
T 1gxr_A          207 VRSWDLREG----------R--QLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN  254 (337)
T ss_dssp             EEEEETTTT----------E--EEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEEECCCC----------c--eEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence            999964221          0  000111  12345555543  3345555677888888653

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=86.55  E-value=27  Score=34.66  Aligned_cols=18  Identities=22%  Similarity=0.248  Sum_probs=14.4

Q ss_pred             CCeEEEEeCCCcEEEEeC
Q 042844          181 WGHALAQTEDGKLFGWGY  198 (372)
Q Consensus       181 ~~~~~~lt~~g~vy~wG~  198 (372)
                      ..|++++..+++||++|-
T Consensus       598 ~~~~~~~~~~~~iyv~GG  615 (695)
T 2zwa_A          598 YGSQIKYITPRKLLIVGG  615 (695)
T ss_dssp             BSCEEEEEETTEEEEECC
T ss_pred             ccceEEEeCCCEEEEECC
Confidence            567877777689999984

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=85.51  E-value=17  Score=31.28  Aligned_cols=155  Identities=9%  Similarity=0.101  Sum_probs=78.1

Q ss_pred             eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCc-eEEEecCCcEEEEeCCCCCC
Q 042844           17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYH-SLAVTNNGAVWAWGRNNEVQ   95 (372)
Q Consensus        17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h-~~~lt~~G~v~~~G~n~~gq   95 (372)
                      .-..+....||++++.+......+....      .....+.....-...|..++..... .++...||.|..|-......
T Consensus        11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~   84 (337)
T 1gxr_A           11 PAYSFHVTADGQMQPVPFPPDALIGPGI------PRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGN   84 (337)
T ss_dssp             ECCEEEECSSSCEEECCCCTTSSSSTTC------CSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTC
T ss_pred             ceeEEEECCCCCEEEeecCCCcEecccc------CCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCc
Confidence            3445777899999998875543332211      1223333332334567777765433 34444588899987543221


Q ss_pred             CcCCCCCCCCccCCCceeec-CCceeEEEEeec--CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCC
Q 042844           96 LGRGALESRATWNDPKRVEG-LDQVNVCAAFAS--GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE  172 (372)
Q Consensus        96 lg~~~~~~~~~~~~p~~i~~-~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~  172 (372)
                      .           .....+.. .....|..++..  ....++-+.+|.|+.|-....         .. .....+. ....
T Consensus        85 ~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---------~~-~~~~~~~-~~~~  142 (337)
T 1gxr_A           85 K-----------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP---------TP-RIKAELT-SSAP  142 (337)
T ss_dssp             C-----------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC------------EEEEEEE-CSSS
T ss_pred             e-----------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---------Cc-ceeeecc-cCCC
Confidence            0           01111110 111234444333  344556677899999854221         00 0001111 1223


Q ss_pred             cEEEEEec--CCeEEEEeCCCcEEEEeCC
Q 042844          173 KIVKVSFG--WGHALAQTEDGKLFGWGYS  199 (372)
Q Consensus       173 ~i~~I~~g--~~~~~~lt~~g~vy~wG~n  199 (372)
                      .|..++..  ....++-+.+|.|+.|-..
T Consensus       143 ~i~~~~~~~~~~~l~~~~~dg~v~~~d~~  171 (337)
T 1gxr_A          143 ACYALAISPDSKVCFSCCSDGNIAVWDLH  171 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence            46666654  3456666788899999754

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=84.03  E-value=20  Score=31.02  Aligned_cols=122  Identities=13%  Similarity=0.066  Sum_probs=69.3

Q ss_pred             CeEEEecCC--CceEEEecCCcEEEEeCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeec---CcEEEEEeCCCc
Q 042844           65 DVTSVSAGH--YHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS---GVVSSAIGDDGS  139 (372)
Q Consensus        65 ~i~~I~~G~--~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g---~~~~~~lt~~g~  139 (372)
                      .+..+....  .+.+++|++|++|.--.......     . +   ..   + ..++.+|+.+.+-   ....+++|++|.
T Consensus        25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~-----~-~---~~---l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~   91 (276)
T 3no0_A           25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQG-----S-K---VS---L-KSREEKIVGAFIREKFGNRLLLATKKGY   91 (276)
T ss_dssp             CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTS-----E-E---CC---C-SSTTCCEEEEEEGGGSCSEEEEEETTSE
T ss_pred             eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccC-----c-c---cc---c-CCCCCEEEEEECCcCCCCEEEEEeCCCE
Confidence            444444433  44688999999998653221100     0 0   00   2 2235567777651   246889999999


Q ss_pred             EEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEe--cCCeEEEEeCCCcEEEEeCCCCCCCCCC
Q 042844          140 LWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSF--GWGHALAQTEDGKLFGWGYSADGRIGNL  207 (372)
Q Consensus       140 v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~--g~~~~~~lt~~g~vy~wG~n~~gqlg~~  207 (372)
                      +...-...+-+-.        .-..-+...+++.++.+..  +.++.+++|++|++|.+-....-.+|+.
T Consensus        92 iKr~~l~~~~~~~--------~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~  153 (276)
T 3no0_A           92 VKKIPLAEFEYKA--------QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPG  153 (276)
T ss_dssp             EEEEEGGGTTTCS--------TTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred             EEEEEHHHhhhhc--------CCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCC
Confidence            9887654432100        0011111123345555443  4567999999999999987665555543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=83.63  E-value=38  Score=33.80  Aligned_cols=145  Identities=14%  Similarity=0.149  Sum_probs=75.9

Q ss_pred             eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecC----CCceEEEecCCcEEEEeCCC
Q 042844           17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAG----HYHSLAVTNNGAVWAWGRNN   92 (372)
Q Consensus        17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G----~~h~~~lt~~G~v~~~G~n~   92 (372)
                      ...++.-..||.|.+|-....              .......+..-...|..++..    ....+.-..||.|+.|-...
T Consensus        21 g~~latg~~dg~I~vwd~~~~--------------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~   86 (753)
T 3jro_A           21 GKRLATCSSDKTIKIFEVEGE--------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN   86 (753)
T ss_dssp             SCCEEEEETTTEEEEEEEETT--------------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred             CCeEEEEECCCcEEEEecCCC--------------CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence            344555567888888853210              011111222233568888765    34556667899999997432


Q ss_pred             CCCCcCCCCCCCCccCCCceeecCCceeEEEEeec----CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecc
Q 042844           93 EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFAS----GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA  168 (372)
Q Consensus        93 ~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g----~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~  168 (372)
                      ..             ..+..........|..++..    ....+.-+.+|.|..|-......          ..+..+. 
T Consensus        87 ~~-------------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~----------~~~~~~~-  142 (753)
T 3jro_A           87 GR-------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT----------TSPIIID-  142 (753)
T ss_dssp             TE-------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC----------CCCEEEE-
T ss_pred             Cc-------------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC----------cceeEee-
Confidence            10             00111111112245555444    44567778899999996532211          1111111 


Q ss_pred             cCCCcEEEEEecC---------------CeEEEEeCCCcEEEEeCC
Q 042844          169 LAGEKIVKVSFGW---------------GHALAQTEDGKLFGWGYS  199 (372)
Q Consensus       169 ~~~~~i~~I~~g~---------------~~~~~lt~~g~vy~wG~n  199 (372)
                      .....|..++...               ...+.-..+|.|+.|-..
T Consensus       143 ~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~  188 (753)
T 3jro_A          143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN  188 (753)
T ss_dssp             CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEE
T ss_pred             cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEecc
Confidence            1123466666543               456666788999999653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=82.05  E-value=24  Score=30.45  Aligned_cols=150  Identities=9%  Similarity=0.052  Sum_probs=78.5

Q ss_pred             eEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecC--CC-ceEEEecCCcEEEEeC-CCC
Q 042844           18 RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAG--HY-HSLAVTNNGAVWAWGR-NNE   93 (372)
Q Consensus        18 ~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G--~~-h~~~lt~~G~v~~~G~-n~~   93 (372)
                      ..++.-..+|.|++|-.....             ....+..+......|..++..  .. ..++-..||.|+.|-. .. 
T Consensus        24 ~~l~~~~~d~~v~iw~~~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-   89 (342)
T 1yfq_A           24 SLLLITSWDGSLTVYKFDIQA-------------KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS-   89 (342)
T ss_dssp             TEEEEEETTSEEEEEEEETTT-------------TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS-
T ss_pred             CEEEEEcCCCeEEEEEeCCCC-------------ccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccC-
Confidence            455666678888888653211             011122222233466666654  33 4556678899999965 22 


Q ss_pred             CCCcCCCCCCCCccCCCceeec-CCceeEEEEeec-CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCC
Q 042844           94 VQLGRGALESRATWNDPKRVEG-LDQVNVCAAFAS-GVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAG  171 (372)
Q Consensus        94 gqlg~~~~~~~~~~~~p~~i~~-~~~~~i~~i~~g-~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~  171 (372)
                      +++              ..+.. .....|..++.. ....+.-+.+|.|+.|-......   . .......+..... ..
T Consensus        90 ~~~--------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~-~~~~~~~~~~~~~-~~  150 (342)
T 1yfq_A           90 PSF--------------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---G-VIAVKNLNSNNTK-VK  150 (342)
T ss_dssp             SSE--------------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---B-CEEEEESCSSSSS-SC
T ss_pred             Cce--------------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---c-cccccCCeeeEEe-eC
Confidence            111              11111 011133333332 56667778899999995321000   0 0000000000001 22


Q ss_pred             CcEEEEEecCCeEEEEeCCCcEEEEeCCC
Q 042844          172 EKIVKVSFGWGHALAQTEDGKLFGWGYSA  200 (372)
Q Consensus       172 ~~i~~I~~g~~~~~~lt~~g~vy~wG~n~  200 (372)
                      ..|..++...+..++-+.+|.|+.|-...
T Consensus       151 ~~v~~~~~~~~~l~~~~~d~~i~i~d~~~  179 (342)
T 1yfq_A          151 NKIFTMDTNSSRLIVGMNNSQVQWFRLPL  179 (342)
T ss_dssp             CCEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred             CceEEEEecCCcEEEEeCCCeEEEEECCc
Confidence            46888888888877888999999998653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=80.87  E-value=17  Score=31.29  Aligned_cols=17  Identities=24%  Similarity=0.362  Sum_probs=12.0

Q ss_pred             CCeEEEEeCCCcEEEEeC
Q 042844          181 WGHALAQTEDGKLFGWGY  198 (372)
Q Consensus       181 ~~~~~~lt~~g~vy~wG~  198 (372)
                      ..|++++. +++||++|-
T Consensus       151 ~~~~~~~~-~~~iyv~GG  167 (301)
T 2vpj_A          151 EGAGLVVA-SGVIYCLGG  167 (301)
T ss_dssp             BSCEEEEE-TTEEEEECC
T ss_pred             ccceEEEE-CCEEEEECC
Confidence            34666555 779999984

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=80.56  E-value=28  Score=30.22  Aligned_cols=64  Identities=17%  Similarity=0.056  Sum_probs=35.3

Q ss_pred             EeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecC--CeEEEEeCCCcEEEEeCC
Q 042844          124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGW--GHALAQTEDGKLFGWGYS  199 (372)
Q Consensus       124 i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~--~~~~~lt~~g~vy~wG~n  199 (372)
                      ++......++-+.+|.|+.|-....            ..+..........|..++...  ...++-+.+|.|+.|-..
T Consensus       183 ~~~~~~~l~~~~~dg~i~i~d~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  248 (369)
T 3zwl_B          183 WSTKGKYIIAGHKDGKISKYDVSNN------------YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS  248 (369)
T ss_dssp             ECGGGCEEEEEETTSEEEEEETTTT------------TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EcCCCCEEEEEcCCCEEEEEECCCC------------cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence            3334445666678899999964221            011111111224566666643  345555678888888753

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=80.34  E-value=19  Score=33.00  Aligned_cols=143  Identities=10%  Similarity=0.079  Sum_probs=77.4

Q ss_pred             eEEEEeeCCCcEEEEeCCCCCccCCCCCCC----CCCCCccce-eecCCCCCCeEEEecCCCceEEEecCCcEEEEeCCC
Q 042844           18 RIFMRSASGTAVVSFGDGSQGALGLPTSLT----GVGGDAYEP-TRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNN   92 (372)
Q Consensus        18 ~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~----~~~~~~~~p-~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~   92 (372)
                      -..+++++...+++-|.+..-.+.....-.    +.... +.| ..++ ++. |..+++ +...+++..+|.|..|-...
T Consensus        40 ~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~-~~~~~~~~-lp~-V~~l~f-d~~~L~v~~~~~l~v~dv~s  115 (388)
T 1xip_A           40 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTP-LTFKWEKE-IPD-VIFVCF-HGDQVLVSTRNALYSLDLEE  115 (388)
T ss_dssp             CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCC-CCCSEEEE-CTT-EEEEEE-ETTEEEEEESSEEEEEESSS
T ss_pred             ccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhcccccc-ccceEEee-CCC-eeEEEE-CCCEEEEEcCCcEEEEEchh
Confidence            344555566666666665433321110000    00011 445 3333 656 999999 77888888999999997544


Q ss_pred             CCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCC
Q 042844           93 EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGE  172 (372)
Q Consensus        93 ~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~  172 (372)
                      ..+..              .++.++ ..+.++.+-....++++.+|.|++|--... +          ..+  +.    .
T Consensus       116 l~~~~--------------~~~~~~-~~v~~i~~~~p~~av~~~dG~L~v~dl~~~-~----------~~~--~~----~  163 (388)
T 1xip_A          116 LSEFR--------------TVTSFE-KPVFQLKNVNNTLVILNSVNDLSALDLRTK-S----------TKQ--LA----Q  163 (388)
T ss_dssp             TTCEE--------------EEEECS-SCEEEEEECSSEEEEEETTSEEEEEETTTC-C----------EEE--EE----E
T ss_pred             hhccC--------------ccceee-cceeeEEecCCCEEEEECCCCEEEEEccCC-c----------ccc--cc----C
Confidence            32111              111111 234455555555888899999999954211 1          011  11    2


Q ss_pred             cEEEEEecCCeEEEEeCCCcEEEE
Q 042844          173 KIVKVSFGWGHALAQTEDGKLFGW  196 (372)
Q Consensus       173 ~i~~I~~g~~~~~~lt~~g~vy~w  196 (372)
                      .|..|+....-.++...+|++..|
T Consensus       164 ~Vs~v~WSpkG~~vg~~dg~i~~~  187 (388)
T 1xip_A          164 NVTSFDVTNSQLAVLLKDRSFQSF  187 (388)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEE
T ss_pred             CceEEEEcCCceEEEEcCCcEEEE
Confidence            466666655555566666766666

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=80.16  E-value=35  Score=31.09  Aligned_cols=159  Identities=15%  Similarity=0.185  Sum_probs=78.0

Q ss_pred             eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCcccee-ecCCCCCCeEEEecCCC---ceEEEecCCcEEEEeCCC
Q 042844           17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPT-RVPGLPSDVTSVSAGHY---HSLAVTNNGAVWAWGRNN   92 (372)
Q Consensus        17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~-~i~~~~~~i~~I~~G~~---h~~~lt~~G~v~~~G~n~   92 (372)
                      ..+++.-..+|.|++|-...........       ....|. .+..-...|..++....   +.+.-..||.|..|-...
T Consensus       141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~-------~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~  213 (430)
T 2xyi_A          141 ACVIATKTPSSDVLVFDYTKHPSKPEPS-------GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA  213 (430)
T ss_dssp             EEEEEEECSSSCEEEEEGGGSCSSCCTT-------CCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTS
T ss_pred             CcEEEEECCCCcEEEEECCCcccccCcc-------ccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCC
Confidence            4566666789999999875421110000       011111 11222234555554432   445556789999998654


Q ss_pred             CCCCcCCCCCCCCccCCCceeecCCceeEEEEee---cCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEeccc
Q 042844           93 EVQLGRGALESRATWNDPKRVEGLDQVNVCAAFA---SGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEAL  169 (372)
Q Consensus        93 ~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~---g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~  169 (372)
                      ......        ...+..........|.+++.   +....+..+.+|.|+.|-......          ..+......
T Consensus       214 ~~~~~~--------~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~----------~~~~~~~~~  275 (430)
T 2xyi_A          214 TPKEHR--------VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT----------SKPSHTVDA  275 (430)
T ss_dssp             CCBGGG--------EEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS----------SSCSEEEEC
T ss_pred             CCCCCc--------eeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC----------CcceeEeec
Confidence            221100        00111111111223555554   344556667899999997543210          011111111


Q ss_pred             CCCcEEEEEecCC---eEEEEeCCCcEEEEeCCC
Q 042844          170 AGEKIVKVSFGWG---HALAQTEDGKLFGWGYSA  200 (372)
Q Consensus       170 ~~~~i~~I~~g~~---~~~~lt~~g~vy~wG~n~  200 (372)
                      ....|..|+...+   ..+.-..+|.|..|-...
T Consensus       276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~  309 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRN  309 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence            2245777776532   344557788899998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	372
d1a12a_	401	b.69.5.1 (A:) Regulator of chromosome condensation	3e-23
d1a12a_	401	b.69.5.1 (A:) Regulator of chromosome condensation	4e-19
d1a12a_	401	b.69.5.1 (A:) Regulator of chromosome condensation	9e-14
d1a12a_	401	b.69.5.1 (A:) Regulator of chromosome condensation	2e-13
d1a12a_	401	b.69.5.1 (A:) Regulator of chromosome condensation	4e-12
d1jtdb_	273	b.69.5.2 (B:) beta-lactamase inhibitor protein-II,	8e-07
d1jtdb_	273	b.69.5.2 (B:) beta-lactamase inhibitor protein-II,	8e-07
d1jtdb_	273	b.69.5.2 (B:) beta-lactamase inhibitor protein-II,	3e-06
d1jtdb_	273	b.69.5.2 (B:) beta-lactamase inhibitor protein-II,	1e-05
d1jtdb_	273	b.69.5.2 (B:) beta-lactamase inhibitor protein-II,	0.003

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.6 bits (241), Expect = 3e-23
 Identities = 77/366 (21%), Positives = 130/366 (35%), Gaps = 40/366 (10%)

Query: 5   KSVVHNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPS 64
           K V  +H +  T         G  V++ G G  G LGL  ++     +  +P  V  +P 
Sbjct: 1   KKVKVSHRSHSTE-------PGL-VLTLGQGDVGQLGLGENVM----ERKKPALVS-IPE 47

Query: 65  DVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA 124
           DV    AG  H++ ++ +G V+++G N+E  LGR      +     K       V V A 
Sbjct: 48  DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAG 107

Query: 125 FASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHA 184
                 ++A+ DDG +++WG  +     +G           V+      +VKV+ G  H 
Sbjct: 108 D---SHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHL 164

Query: 185 LAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSE 244
           +  T DG L+  G    G++G              +  +    Q +    + K   L S 
Sbjct: 165 VMLTADGDLYTLGCGEQGQLGR----------VPELFANRGGRQGLERLLVPKCVMLKSR 214

Query: 245 GMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMG 304
           G                  V   D  CG   +  +   G +   G + Y QLG    +  
Sbjct: 215 GSRG--------------HVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESC 260

Query: 305 MFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMGPDNVPLV 364
             P ++     S  S +G S         +  G A  +    + R          ++P +
Sbjct: 261 FIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTL 320

Query: 365 VEGLEG 370
           +  L  
Sbjct: 321 ISRLPA 326

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (210), Expect = 4e-19
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 41/220 (18%)

Query: 64  SDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCA 123
                   G Y + A+++ G V+ +G +N  QLG                      +   
Sbjct: 220 VRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPG-TESCFIPQNLTSFKNSTKSWVG 278

Query: 124 AFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGH 183
                  +  +  +G  +  G+++ G+LGLG+   E  +P+ +  L    +  V+ G   
Sbjct: 279 FSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL--PAVSSVACGASV 336

Query: 184 ALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVS 243
             A T+DG++F WG   + ++G             + D  S                   
Sbjct: 337 GYAVTKDGRVFAWGMGTNYQLGT----------GQDEDAWS------------------- 367

Query: 244 EGMEKEKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNG 283
                    P+      +E   V+ ++ G  H+++L ++ 
Sbjct: 368 ---------PVEMMGKQLENRVVLSVSSGGQHTVLLVKDK 398

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (169), Expect = 9e-14
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 7/129 (5%)

Query: 66  VTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAF 125
               S G +H++ + + G  ++ GR    +LG G  E     + P  +  L    V +  
Sbjct: 276 WVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLG--EGAEEKSIPTLISRLP--AVSSVA 331

Query: 126 ASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRV--EALAGEKIVKVSFGWGH 183
               V  A+  DG ++ WG     QLG G    +A  P  +  + L    ++ VS G  H
Sbjct: 332 CGASVGYAVTKDGRVFAWGMGTNYQLGTG-QDEDAWSPVEMMGKQLENRVVLSVSSGGQH 390

Query: 184 ALAQTEDGK 192
            +   +D +
Sbjct: 391 TVLLVKDKE 399

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 2e-13
 Identities = 71/335 (21%), Positives = 121/335 (36%), Gaps = 40/335 (11%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V SFG   +GALG  TS+ G             L   V  VSAG  H+ A+T++G V+ W
Sbjct: 68  VYSFGCNDEGALGRDTSVEGS----EMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLW 123

Query: 89  GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKR 148
           G   +     G LE          V+    V V    +       +  DG L+  G  ++
Sbjct: 124 GSFRDNNGVIGLLEP--MKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQ 181

Query: 149 GQLGLGKDIT---------------EAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKL 193
           GQLG   ++                + ++     +    +      G     A + +G +
Sbjct: 182 GQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHV 241

Query: 194 FGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMP 253
           +G+G S   ++G  G      P +    ++S       S        + SEG        
Sbjct: 242 YGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRA 301

Query: 254 IIWE------------PFLVEGVE-VVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREK 300
                           P L+  +  V  +ACG      + ++G + + G     QLG  +
Sbjct: 302 EYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQ 361

Query: 301 QDMGMFPVDI------NFHPVSISSGLGHSLAICE 329
            +    PV++      N   +S+SSG  H++ + +
Sbjct: 362 DEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 396

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 4e-12
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 56  PTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEG 115
           PT +  LP  V+SV+ G     AVT +G V+AWG     QLG G  E   +   P  + G
Sbjct: 318 PTLISRLP-AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWS---PVEMMG 373

Query: 116 --LDQVNVCAAFASGVVSSAIGDDGS 139
             L+   V +  + G  +  +  D  
Sbjct: 374 KQLENRVVLSVSSGGQHTVLLVKDKE 399

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

 Score = 47.4 bits (111), Expect = 8e-07
 Identities = 47/283 (16%), Positives = 90/283 (31%), Gaps = 44/283 (15%)

Query: 83  GAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWV 142
            +V AWG NN+        E+++                  A A G         G +  
Sbjct: 4   TSVVAWGGNNDWGEATVPAEAQSGV---------------DAIAGGYFHGLALKGGKVLG 48

Query: 143 WGKSKRGQLGLGKDIT---EAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGWGY- 198
           WG +  GQL +        +AI      +LA +    +++G       T   +       
Sbjct: 49  WGANLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEARSGVDA 108

Query: 199 -------SADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKY 251
                  S   + G +    + S   + +   ++S        +  A  + + G+     
Sbjct: 109 IAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGD 168

Query: 252 MPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN 311
                     E    VD   G     +  ++G +++ G N Y Q           P +  
Sbjct: 169 NYFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTT--------VPTEAL 220

Query: 312 FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLG 354
               +I+SG  +SLA+              +++WG +R++   
Sbjct: 221 SGVSAIASGEWYSLALKN----------GKVIAWGSSRTAPSS 253

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

 Score = 47.4 bits (111), Expect = 8e-07
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 17/72 (23%)

Query: 29  VVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW 88
           V+++GD       +PT                   S V+++++G ++SLA+  NG V AW
Sbjct: 202 VIAWGDNRYKQTTVPTEAL----------------SGVSAIASGEWYSLALK-NGKVIAW 244

Query: 89  GRNNEVQLGRGA 100
           G +        +
Sbjct: 245 GSSRTAPSSVQS 256

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

 Score = 45.9 bits (107), Expect = 3e-06
 Identities = 25/102 (24%), Positives = 34/102 (33%), Gaps = 17/102 (16%)

Query: 71  AGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVV 130
           AG         +G V AWG N   Q                  E L  V   +A ASG  
Sbjct: 188 AGGIFHSLALKDGKVIAWGDNRYKQTTVP-------------TEALSGV---SAIASGEW 231

Query: 131 SSAIGDDGSLWVWGKSKRGQLGLGKDITE-AIVPSRVEALAG 171
            S    +G +  WG S+     +   ++     P+   AL G
Sbjct: 232 YSLALKNGKVIAWGSSRTAPSSVQSGVSSIEAGPNAAYALKG 273

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 16/72 (22%)

Query: 25 SGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGA 84
          + T+VV++G  +              G+A  P       S V +++ G++H LA+   G 
Sbjct: 2  AATSVVAWGGNNDW------------GEATVPA---EAQSGVDAIAGGYFHGLALK-GGK 45

Query: 85 VWAWGRNNEVQL 96
          V  WG N   QL
Sbjct: 46 VLGWGANLNGQL 57

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 13/66 (19%)

Query: 137 DGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALAQTEDGKLFGW 196
             S+  WG +                 + V A A   +  ++ G+ H LA  + GK+ GW
Sbjct: 3   ATSVVAWGGNNDWG------------EATVPAEAQSGVDAIAGGYFHGLA-LKGGKVLGW 49

Query: 197 GYSADG 202
           G + +G
Sbjct: 50  GANLNG 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	372
d1a12a_	401	Regulator of chromosome condensation RCC1 {Human (	100.0
d1a12a_	401	Regulator of chromosome condensation RCC1 {Human (	100.0
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	100.0
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	100.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.1
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.02
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	92.46

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-52  Score=392.34  Aligned_cols=331  Identities=21%  Similarity=0.281  Sum_probs=239.6

Q ss_pred             eEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEeCCCCCCCc
Q 042844           18 RIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLG   97 (372)
Q Consensus        18 ~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~gqlg   97 (372)
                      .|+.+++.+|+||+||.|.+||||++.+.    .....|.+++.+ .+|++|+||..|++||+++|+||+||.|.+||||
T Consensus         6 ~h~~~~~~~G~vy~wG~n~~GqLG~g~~~----~~~~~P~~v~~~-~~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG   80 (401)
T d1a12a_           6 SHRSHSTEPGLVLTLGQGDVGQLGLGENV----MERKKPALVSIP-EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALG   80 (401)
T ss_dssp             CCTTCCCCCBEEEEEEECTTSTTCSCTTC----CEEEEEEEECCS-SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTC
T ss_pred             eEEEEECCCCEEEEEeCCCCCCCCCCCCC----ceeccCEEeCCC-CCeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCC
Confidence            46777889999999999999999998733    368899999855 7899999999999999999999999999999999


Q ss_pred             CCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEE
Q 042844           98 RGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKV  177 (372)
Q Consensus        98 ~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I  177 (372)
                      .+.....   ..|.+.......+|++|+||..|+++++++|+||+||.+..++.+..........+..+......+|++|
T Consensus        81 ~g~~~~~---~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  157 (401)
T d1a12a_          81 RDTSVEG---SEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKV  157 (401)
T ss_dssp             SCCCSTT---GGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEE
T ss_pred             ccccccc---ccccccccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEE
Confidence            9877622   3333344445568999999999999999999999999987766655444333334444444555689999


Q ss_pred             EecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCC---C------C-CCccccchhhHHHhhhhhhcccc
Q 042844          178 SFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDR---S------S-ESDQEISSSTIEKAQKLVSEGME  247 (372)
Q Consensus       178 ~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~---~------~-~~~~~~~~~~~~~~~~~~~~~~~  247 (372)
                      +||..|+++++.+|++|+||.|.++|||.................   +      . ..........+.. ...... ..
T Consensus       158 ~~g~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~-g~~~~~-~l  235 (401)
T d1a12a_         158 ASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFC-GAYFTF-AI  235 (401)
T ss_dssp             EECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEE-ETTEEE-EE
T ss_pred             EecccceeeeecCCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEe-cCCeEE-EE
Confidence            999999999999999999999999999977442222111000000   0      0 0000000000000 000000 01


Q ss_pred             cccCCCceecee-------eec---------------CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCC-CCc
Q 042844          248 KEKYMPIIWEPF-------LVE---------------GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ-DMG  304 (372)
Q Consensus       248 ~~~~~~~~~~p~-------~i~---------------~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~-~~~  304 (372)
                      .+....+.+...       ...               ...|+++++|..|+++++++|+||+||.|.++|||.++. ...
T Consensus       236 ~~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~  315 (401)
T d1a12a_         236 SHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEK  315 (401)
T ss_dssp             ETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCE
T ss_pred             ecCCeEeeecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccccc
Confidence            111111111110       000               255889999999999999999999999999999998764 444


Q ss_pred             ccceeec--cccEEEecCCCceEEEEeeccccccCCCccEEEecCCCCCCccCCC--CCCCceEEec
Q 042844          305 MFPVDIN--FHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWGWNRSSQLGRMG--PDNVPLVVEG  367 (372)
Q Consensus       305 ~~P~~v~--~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG~n~~gqLG~~~--~~~~p~~i~~  367 (372)
                      ..|++++  .+|++|+||.+|++|+++         +|+||+||+|.+||||+|+  +..+|++|..
T Consensus       316 ~~P~~i~~~~~i~~Is~G~~hs~alt~---------dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~  373 (401)
T d1a12a_         316 SIPTLISRLPAVSSVACGASVGYAVTK---------DGRVFAWGMGTNYQLGTGQDEDAWSPVEMMG  373 (401)
T ss_dssp             EEEEECCSSSSEEEEEECSSEEEEEET---------TSCEEEEECCTTSTTCSSSCSCEEEEEECCS
T ss_pred             cCCEEcCCCCCeEEEEeeCCEEEEEeC---------CCeEEEEecCCCCCCCCCCCCCEecCEEeec
Confidence            5677776  689999999999999999         9999999999999999999  4456766643

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-44  Score=340.83  Aligned_cols=314  Identities=24%  Similarity=0.280  Sum_probs=226.6

Q ss_pred             hcceeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEe
Q 042844           10 NHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWG   89 (372)
Q Consensus        10 ~~~~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G   89 (372)
                      +-.+++|..|.++|+++|+||+||.|.+||||.+....   .....|..+. ...+|++|+||..|+++++++|+||+||
T Consensus        49 i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~---~~~~~~~~~~-~~~~i~~i~~g~~~~~~~~~~g~v~~wG  124 (401)
T d1a12a_          49 VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVE---GSEMVPGKVE-LQEKVVQVSAGDSHTAALTDDGRVFLWG  124 (401)
T ss_dssp             EEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCST---TGGGSCEECC-CCSCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred             eEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCcccccc---cccccccccc-cccceeeecccccceeeccccccceecc
Confidence            34578999999999999999999999999999987332   2334455544 3468999999999999999999999999


Q ss_pred             CCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcc----------
Q 042844           90 RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITE----------  159 (372)
Q Consensus        90 ~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~----------  159 (372)
                      .+...+.+........  ..+..+....+.+|++|+||..|+++++++|++|+||.+.+||||.......          
T Consensus       125 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~  202 (401)
T d1a12a_         125 SFRDNNGVIGLLEPMK--KSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLER  202 (401)
T ss_dssp             CEEETTEEEESSBBTB--CEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHH
T ss_pred             ccccccccccccCCcc--ccceeeeeccCCceeEEEecccceeeeecCCcccccccCCccccCCCCccccccCCcccccc
Confidence            8877665554443111  1223333444568999999999999999999999999999999997643211          


Q ss_pred             cccceEec-----ccCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCC-CCccccc--
Q 042844          160 AIVPSRVE-----ALAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSS-ESDQEIS--  231 (372)
Q Consensus       160 ~~~p~~i~-----~~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~-~~~~~~~--  231 (372)
                      ...|..+.     .....+|.+|+||..|+++|+++|+||.||.|.++++|.........+......... .....+.  
T Consensus       203 ~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g  282 (401)
T d1a12a_         203 LLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGG  282 (401)
T ss_dssp             HHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEEC
T ss_pred             ccccceeeccccCCCCCceEEEEEecCCeEEEEecCCeEeeecccceecccccccccceeccccccccccceeEEEEeee
Confidence            12344433     223467999999999999999999999999999999998755332211111111000 0000000  


Q ss_pred             --------h-hhHHHhhhhhhcccccccCCCceeceeeec-CccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCC
Q 042844          232 --------S-STIEKAQKLVSEGMEKEKYMPIIWEPFLVE-GVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQ  301 (372)
Q Consensus       232 --------~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~-~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~  301 (372)
                              . ..+..........+...........|+.++ ..+|++|+||.+|++||+++|+||+||+|.+||||.++.
T Consensus       283 ~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i~~~~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~  362 (401)
T d1a12a_         283 QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQD  362 (401)
T ss_dssp             SSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC
T ss_pred             ccceeeeccCCCEEEecccccCccCCCcccccccCCEEcCCCCCeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCC
Confidence                    0 000000000000111111223344577777 678999999999999999999999999999999999999


Q ss_pred             CCcccceeec------cccEEEecCCCceEEEEe
Q 042844          302 DMGMFPVDIN------FHPVSISSGLGHSLAICE  329 (372)
Q Consensus       302 ~~~~~P~~v~------~~i~~ia~G~~~s~~l~~  329 (372)
                      .+...|+++.      .+|++|+||.+|+++|++
T Consensus       363 ~~~~~P~~v~~~~~~~~~v~~v~~G~~hs~~l~~  396 (401)
T d1a12a_         363 EDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK  396 (401)
T ss_dssp             SCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEE
T ss_pred             CCEecCEEeeccCCCCCEEEEEEEccceEEEEEE
Confidence            9999999875      369999999999999999

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=100.00  E-value=3.2e-38  Score=282.98  Aligned_cols=230  Identities=29%  Similarity=0.385  Sum_probs=183.9

Q ss_pred             hhcceeeeeeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEE
Q 042844            9 HNHVNVLTSRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAW   88 (372)
Q Consensus         9 ~~~~~~~~~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~   88 (372)
                      ++-.+++|..|+++|+ +|+||+||.|.+||||.+...                ..+|++|+||..|+++|+ ||+||+|
T Consensus        27 ~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~~~----------------~~~v~~v~~G~~~~~al~-dg~v~~w   88 (273)
T d1jtdb_          27 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAAT----------------QSGVDAIAAGNYHSLALK-DGEVIAW   88 (273)
T ss_dssp             SEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGG----------------GSCCCEEEECSSEEEEEE-TTEEEEE
T ss_pred             CcEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeeecc----------------cccceEEecCCCceeeee-eeeeecc
Confidence            3445789999999998 899999999999999986611                146899999999999996 8999999


Q ss_pred             eCCCCCCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecc
Q 042844           89 GRNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEA  168 (372)
Q Consensus        89 G~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~  168 (372)
                      |.+.++|++.....           .    ..+..++++..|+++++ +|++|.||.+..++....         .    
T Consensus        89 G~~~~gq~~~~~~~-----------~----~~~~~i~~~~~~~~~~~-dg~v~~~g~~~~~~~~~~---------~----  139 (273)
T d1jtdb_          89 GGNEDGQTTVPAEA-----------R----SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVP---------A----  139 (273)
T ss_dssp             ECCTTSTTCCCGGG-----------G----SSCCEEEEETTEEEEEE-TTEEEEEECCTTSTTSCC---------G----
T ss_pred             CCCcceeecccccc-----------c----cceeEEeeecccccccc-cccceecccCCCCceeee---------c----
Confidence            99999997653221           1    23567889999998886 899999998876654321         1    


Q ss_pred             cCCCcEEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhccccc
Q 042844          169 LAGEKIVKVSFGWGHALAQTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEK  248 (372)
Q Consensus       169 ~~~~~i~~I~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (372)
                      .....|..++++.+|++++ ++|.+|+||.+.++|+....                                        
T Consensus       140 ~~~~~v~~~~~~~~~~~~~-~~g~~~~~G~~~~g~~~~~~----------------------------------------  178 (273)
T d1jtdb_         140 EAQSGVTALDGGVYTALAV-KNGGVIAWGDNYFGQTTVPA----------------------------------------  178 (273)
T ss_dssp             GGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTSCCG----------------------------------------
T ss_pred             cCCceEEEEeccceeeeee-cccceeEeecccCCcccccc----------------------------------------
Confidence            1113467777766655554 57899999999988875430                                        


Q ss_pred             ccCCCceeceeeecCccEEEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeeccccEEEecCCCceEEEE
Q 042844          249 EKYMPIIWEPFLVEGVEVVDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAIC  328 (372)
Q Consensus       249 ~~~~~~~~~p~~i~~~~i~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~~~i~~ia~G~~~s~~l~  328 (372)
                               +   ...+|++|+||.+|+++|+ ||+||+||.|.+|||+.        |.....+|++|+||..|+++| 
T Consensus       179 ---------~---~~~~v~~Is~G~~h~~~l~-dG~v~~WG~n~~Gql~~--------~~~~~~~v~~I~~G~~~~~~l-  236 (273)
T d1jtdb_         179 ---------E---AQSGVDDVAGGIFHSLALK-DGKVIAWGDNRYKQTTV--------PTEALSGVSAIASGEWYSLAL-  236 (273)
T ss_dssp             ---------G---GSSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGGGSSCCEEEECSSCEEEE-
T ss_pred             ---------c---ccCCccceeccceeeEEEe-cCcEEEcCCCCCCccCC--------CccCCCCcEEEEeCcceEEEE-
Confidence                     0   0357999999999999998 79999999999999985        444456899999999999887 


Q ss_pred             eeccccccCCCccEEEecCCCCCCccCCC
Q 042844          329 EVRSSNVTGGARGIVSWGWNRSSQLGRMG  357 (372)
Q Consensus       329 ~~~~~~~~~~~g~v~~wG~n~~gqLG~~~  357 (372)
                      +         ||+||+||.|.++|++.+.
T Consensus       237 ~---------~g~v~~WG~~~~~~~~~~~  256 (273)
T d1jtdb_         237 K---------NGKVIAWGSSRTAPSSVQS  256 (273)
T ss_dssp             E---------TTEEEEESTTCCCCGGGSS
T ss_pred             E---------CCEEEEECCCCCCCCCCCC
Confidence            6         9999999999999998877

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=100.00  E-value=1e-34  Score=260.06  Aligned_cols=214  Identities=28%  Similarity=0.424  Sum_probs=168.3

Q ss_pred             CcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecCCCceEEEecCCcEEEEeCCCCCCCcCCCCCCCCc
Q 042844           27 TAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAGHYHSLAVTNNGAVWAWGRNNEVQLGRGALESRAT  106 (372)
Q Consensus        27 g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G~~h~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~  106 (372)
                      ..||+||.|..++            ....|.+..   .+|++|+||..|+++|+ ||+||+||.|.+||||.+...    
T Consensus         4 ~sv~~WG~~~~~~------------~~~~~~~~~---~~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~~~----   63 (273)
T d1jtdb_           4 TSVVAWGGNNDWG------------EATVPAEAQ---SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAAT----   63 (273)
T ss_dssp             SEEEEESSCCSSS------------TTCCCGGGS---SSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGG----
T ss_pred             CEEEEECCCCCCC------------ceeccccCC---CCcEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeeecc----
Confidence            3699999876543            222333332   57999999999999998 899999999999999975443    


Q ss_pred             cCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceEecccCCCcEEEEEecCCeEEE
Q 042844          107 WNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSRVEALAGEKIVKVSFGWGHALA  186 (372)
Q Consensus       107 ~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~I~~g~~~~~~  186 (372)
                                 ...+++|+||..|+++|+ +|.||+||.+.+||++...         ++    ...++.|+++..|+++
T Consensus        64 -----------~~~v~~v~~G~~~~~al~-dg~v~~wG~~~~gq~~~~~---------~~----~~~~~~i~~~~~~~~~  118 (273)
T d1jtdb_          64 -----------QSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPA---------EA----RSGVDAIAAGAWASYA  118 (273)
T ss_dssp             -----------GSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCG---------GG----GSSCCEEEEETTEEEE
T ss_pred             -----------cccceEEecCCCceeeee-eeeeeccCCCcceeecccc---------cc----ccceeEEeeecccccc
Confidence                       125778999999999997 8999999999999986531         11    1347889999999999


Q ss_pred             EeCCCcEEEEeCCCCCCCCCCCCCCcCCCCCCCcCCCCCCccccchhhHHHhhhhhhcccccccCCCceeceeeecCccE
Q 042844          187 QTEDGKLFGWGYSADGRIGNLGKALESSPLDSNIDRSSESDQEISSSTIEKAQKLVSEGMEKEKYMPIIWEPFLVEGVEV  266 (372)
Q Consensus       187 lt~~g~vy~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~i  266 (372)
                      ++ +|++|.||.+..++.....                                                   . ....|
T Consensus       119 ~~-dg~v~~~g~~~~~~~~~~~---------------------------------------------------~-~~~~v  145 (273)
T d1jtdb_         119 LK-DGKVIAWGDDSDGQTTVPA---------------------------------------------------E-AQSGV  145 (273)
T ss_dssp             EE-TTEEEEEECCTTSTTSCCG---------------------------------------------------G-GGSSE
T ss_pred             cc-cccceecccCCCCceeeec---------------------------------------------------c-CCceE
Confidence            87 7999999998776654330                                                   0 02456


Q ss_pred             EEEEecCCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeeccccEEEecCCCceEEEEeeccccccCCCccEEEec
Q 042844          267 VDIACGFDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDINFHPVSISSGLGHSLAICEVRSSNVTGGARGIVSWG  346 (372)
Q Consensus       267 ~~I~~G~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~~~i~~ia~G~~~s~~l~~~~~~~~~~~~g~v~~wG  346 (372)
                      ..++++.. ++++.++|.+|+||.+.++|+.        .|.+...+|++|+||.+|+++|+          ||+||+||
T Consensus       146 ~~~~~~~~-~~~~~~~g~~~~~G~~~~g~~~--------~~~~~~~~v~~Is~G~~h~~~l~----------dG~v~~WG  206 (273)
T d1jtdb_         146 TALDGGVY-TALAVKNGGVIAWGDNYFGQTT--------VPAEAQSGVDDVAGGIFHSLALK----------DGKVIAWG  206 (273)
T ss_dssp             EEEEECSS-EEEEEETTEEEEEECCTTSTTS--------CCGGGSSSEEEEEECSSEEEEEE----------TTEEEEEE
T ss_pred             EEEeccce-eeeeecccceeEeecccCCccc--------ccccccCCccceeccceeeEEEe----------cCcEEEcC
Confidence            67766664 4556668999999999999875        34555678999999999999975          89999999


Q ss_pred             CCCCCCccCCC
Q 042844          347 WNRSSQLGRMG  357 (372)
Q Consensus       347 ~n~~gqLG~~~  357 (372)
                      .|.+||||.+.
T Consensus       207 ~n~~Gql~~~~  217 (273)
T d1jtdb_         207 DNRYKQTTVPT  217 (273)
T ss_dssp             CCTTSTTCCCG
T ss_pred             CCCCCccCCCc
Confidence            99999999875

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.10  E-value=0.0094  Score=52.55  Aligned_cols=71  Identities=13%  Similarity=-0.008  Sum_probs=40.6

Q ss_pred             CCeeEEEecCCCEEEEeCCCCCccCCCCCCCcccceeec---cccEEEe----cCCCceE-EEEeeccccccCCCccEEE
Q 042844          273 FDHSLVLGRNGVLLSCGSNVYGQLGREKQDMGMFPVDIN---FHPVSIS----SGLGHSL-AICEVRSSNVTGGARGIVS  344 (372)
Q Consensus       273 ~~h~~alt~~G~vy~wG~n~~gqlG~~~~~~~~~P~~v~---~~i~~ia----~G~~~s~-~l~~~~~~~~~~~~g~v~~  344 (372)
                      ..|+.++..||+||+.|-...+........ ...+...+   ..+..++    .-..|+. ++..         ||+||+
T Consensus       290 ~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~-~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~---------dG~v~v  359 (387)
T d1k3ia3         290 TFHTSVVLPDGSTFITGGQRRGIPFEDSTP-VFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLP---------DGRVFN  359 (387)
T ss_dssp             BSCEEEECTTSCEEEECCBSBCCTTCCCSB-CCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECT---------TSCEEE
T ss_pred             ccceeeeccCCeEEEECCcccCccCCCCcE-eceEEEEECCCCeEEECCCCCCcccceEEEEECC---------CCEEEE
Confidence            457778888999999986654433322211 11111111   2333332    2245664 4667         999999


Q ss_pred             ecCCCCCCc
Q 042844          345 WGWNRSSQL  353 (372)
Q Consensus       345 wG~n~~gqL  353 (372)
                      +|-+..+.-
T Consensus       360 ~GG~~~~~~  368 (387)
T d1k3ia3         360 GGGGLCGDC  368 (387)
T ss_dssp             EECCCCTTC
T ss_pred             EeCCCcCCC
Confidence            998766553

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.02  E-value=0.03  Score=49.10  Aligned_cols=109  Identities=18%  Similarity=0.150  Sum_probs=56.2

Q ss_pred             eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCC-CCC---eEEEecCC---CceEEEecCCcEEEEe
Q 042844           17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGL-PSD---VTSVSAGH---YHSLAVTNNGAVWAWG   89 (372)
Q Consensus        17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~-~~~---i~~I~~G~---~h~~~lt~~G~v~~~G   89 (372)
                      ..|..++..+|+||++|-....+.+...       .....+.+=.. ...   +.......   .++.++..||++|..|
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~-------~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~G   93 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSP-------GGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTG   93 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCC-------CSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEEC
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCC-------CceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEee
Confidence            3466777899999999985443332221       11111111111 111   11122222   3467888999999998


Q ss_pred             CCCCCCCcCCCCCCCCccCCCceeecCCceeEEEE----eecCcEEEEEeCCCcEEEEeCCC
Q 042844           90 RNNEVQLGRGALESRATWNDPKRVEGLDQVNVCAA----FASGVVSSAIGDDGSLWVWGKSK  147 (372)
Q Consensus        90 ~n~~gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i----~~g~~~~~~lt~~g~v~~~G~n~  147 (372)
                      ........         ...|      ....-..+    ..-..|++++..||+||++|...
T Consensus        94 g~~~~~~~---------~yd~------~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~  140 (387)
T d1k3ia3          94 GNDAKKTS---------LYDS------SSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSW  140 (387)
T ss_dssp             SSSTTCEE---------EEEG------GGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCC
T ss_pred             cCCCccee---------EecC------ccCcccccccccccccccceeeecCCceeeecccc
Confidence            54321110         0011      00011111    12356899999999999999653

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.46  E-value=2.2  Score=34.53  Aligned_cols=152  Identities=7%  Similarity=-0.053  Sum_probs=74.9

Q ss_pred             eeEEEEeeCCCcEEEEeCCCCCccCCCCCCCCCCCCccceeecCCCCCCeEEEecC---CCceEEEecCCcEEEEeCCCC
Q 042844           17 SRIFMRSASGTAVVSFGDGSQGALGLPTSLTGVGGDAYEPTRVPGLPSDVTSVSAG---HYHSLAVTNNGAVWAWGRNNE   93 (372)
Q Consensus        17 ~~~~~~l~~~g~vy~wG~n~~gqLG~~~~~~~~~~~~~~p~~i~~~~~~i~~I~~G---~~h~~~lt~~G~v~~~G~n~~   93 (372)
                      .++++.-..||.|.+|-.....+             .............|..++..   ....+.-..||.|+.|-....
T Consensus        23 ~~~L~s~s~Dg~v~iwd~~~~~~-------------~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~   89 (342)
T d1yfqa_          23 KSLLLITSWDGSLTVYKFDIQAK-------------NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS   89 (342)
T ss_dssp             GTEEEEEETTSEEEEEEEETTTT-------------EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS
T ss_pred             CCEEEEEECCCeEEEEEccCCCc-------------ceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccc
Confidence            44555666788899985432111             11111111123467777643   223344467999999975432


Q ss_pred             CCCcCCCCCCCCccCCCceeecCCceeEEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccccceE-ecccCCC
Q 042844           94 VQLGRGALESRATWNDPKRVEGLDQVNVCAAFASGVVSSAIGDDGSLWVWGKSKRGQLGLGKDITEAIVPSR-VEALAGE  172 (372)
Q Consensus        94 gqlg~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~p~~-i~~~~~~  172 (372)
                      .........            ............+....+....++.+..|-.......      .....+.. .......
T Consensus        90 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~------~~~~~~~~~~~~~~~~  151 (342)
T d1yfqa_          90 PSFQALTNN------------EANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG------VIAVKNLNSNNTKVKN  151 (342)
T ss_dssp             SSEEECBSC------------CCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB------CEEEEESCSSSSSSCC
T ss_pred             ccccccccc------------ccccccccccccccccccccccccccceeeccccccc------eeeeccccccccccee
Confidence            211110000            0111223344556666777788888988843111000      00000000 0001112


Q ss_pred             cEEEEEecCCeEEEEeCCCcEEEEeCC
Q 042844          173 KIVKVSFGWGHALAQTEDGKLFGWGYS  199 (372)
Q Consensus       173 ~i~~I~~g~~~~~~lt~~g~vy~wG~n  199 (372)
                      ....+.......+.-+.+|.|..|-..
T Consensus       152 ~~~~~~~~~~~~~~~~~d~~i~~~~~~  178 (342)
T d1yfqa_         152 KIFTMDTNSSRLIVGMNNSQVQWFRLP  178 (342)
T ss_dssp             CEEEEEECSSEEEEEESTTEEEEEESS
T ss_pred             eeeeeeccCCceeeecCCCcEEEEecc
Confidence            344556666777778889999998754