Citrus Sinensis ID: 043014

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MEEQQQGEQEPTTPTSPTSSSSSSYKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQSHQNPSSGWPALYASVLLGAVFGLLSMVAALAVAVPATLVIWITVLVLLAFFGKPRTSLVIEGRKITKEIIGFVFKILLKEGNAVAAVCAVLGYFALVRRNCGDLE
Secondary Structure (PSIPRED)
cHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHEccccccc
Coil and Loop (DISEMBL)
meeqqqgeqepttptsptssssssYKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNlqshqnpssgwpALYASVLLGAVFGLLSMVAALAVAVPATLVIWITVLVLLAFfgkprtslviEGRKITKEIIGFVFKILLKEGNAVAAVCAVLGYFALVRRNCGDLE
Flexible Loop (DISEMBL)
meeqqqgeqepttptsptssssssYKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQSHQNPSSGWPALYASVLLGAVFGLLSMVAALAVAVPATLVIWITVLVLLAFFGKprtslviegrkiTKEIIGFVFKILLKEGNAVAAVCAVLGYFALVRRNCGDLE
Low Complexity Region (SEG)
MeeqqqgeqepttptsptssssssYKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQSHQNPSSGWPALYASVLLGAVFGllsmvaalavavpatlviwitvlvllAFFGKPRTSLVIEGRKITKEIIGFVFKILLKEGNAVAAVCAVLGYFALVRRNCGDLE
Disordered region (IsUnstruct)
************************YKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQSHQNPSSGWPALYASVLLGAVFGLLSMVAALAVAVPATLVIWITVLVLLAFFGKPRTSLVIEGRKITKEIIGFVFKILLKEGNAVAAVCAVLGYFALVRRNC****
Disordered Region (DISOPRED)
**********************SSYKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQSHQNPSSGWPALYASVLLGAVFGLLSMVAALAVAVPATLVIWITVLVLLAFFGKPRTSLVIEGRKITKEIIGFVFKILLKEGNAVAAVCAVLGYFALV*RN*****
Disordered Region (DISEMBL)
************************YKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQSHQNPSSGWPALYASVLLGAVFGLLSMVAALAVAVPATLVIWITVLVLLAFFGKPRTSLVIEGRKITKEIIGFVFKILLKEGNAVAAVCAVLGYFALVRRNCGDLE
Disordered Region (DISPRO)
*******************SSSSSYKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQSHQNPSSGWPALYASVLLGAVFGLLSMVAALAVAVPATLVIWITVLVLLAFFGKPRTSLVIEGRKITKEIIGFVFKILLKEGNAVAAVCAVLGYFALVRRNC****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEQQQGEQEPTTPTSPTSSSSSSYKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQSHQNPSSGWPALYASVLLGAVFGLLSMVAALAVAVPATLVIWITVLVLLAFFGKPRTSLVIEGRKITKEIIGFVFKILLKEGNAVAAVCAVLGYFALVRRNCGDLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
255553735	168	conserved hypothetical protein [Ricinus	0.947	0.976	0.785	4e-60
357474351	167	hypothetical protein MTR_4g078240 [Medic	0.924	0.958	0.697	2e-57
356542947	175	PREDICTED: uncharacterized protein LOC10	0.930	0.92	0.666	3e-57
224121928	141	predicted protein [Populus trichocarpa]	0.797	0.978	0.862	7e-56
18412310	162	uncharacterized protein [Arabidopsis tha	0.884	0.944	0.656	9e-52
116831333	163	unknown [Arabidopsis thaliana]	0.878	0.932	0.658	9e-52
21593419	145	unknown [Arabidopsis thaliana]	0.791	0.944	0.687	7e-49
297809755	166	F21B7.33 [Arabidopsis lyrata subsp. lyra	0.884	0.921	0.627	1e-48
18379130	167	uncharacterized protein [Arabidopsis tha	0.924	0.958	0.697	7e-48
9280654	166	F21B7.33 [Arabidopsis thaliana]	0.924	0.963	0.697	9e-48

>gi|255553735|ref|XP_002517908.1| conserved hypothetical protein [Ricinus communis] gi|223542890|gb|EEF44426.1| conserved hypothetical protein [Ricinus communis]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 132/168 (78%), Positives = 141/168 (83%), Gaps = 4/168 (2%)

Query: 1   MEEQQQGEQEPTTPTSPTSSSSSSYKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSI 60
           ME Q++ E        P    SS+Y  FI +MSKRRTWVCLFV+VY ILLSSSWN LKS+
Sbjct: 1   MESQEEVEATRIQQQQP----SSTYSLFITVMSKRRTWVCLFVLVYTILLSSSWNLLKSV 56

Query: 61  LSWYNLQSHQNPSSGWPALYASVLLGAVFGLLSMVAALAVAVPATLVIWITVLVLLAFFG 120
           LSWY  QS    SSGWPALYASVLLGAVFGLLSMVAALAVAVPATLVIWITV+VLLAFFG
Sbjct: 57  LSWYKEQSQVATSSGWPALYASVLLGAVFGLLSMVAALAVAVPATLVIWITVVVLLAFFG 116

Query: 121 KPRTSLVIEGRKITKEIIGFVFKILLKEGNAVAAVCAVLGYFALVRRN 168
           KPR +LVIEGRKIT+EIIGFVFKILLKEGN VAAVCAVLGYFALVRRN
Sbjct: 117 KPRRALVIEGRKITREIIGFVFKILLKEGNFVAAVCAVLGYFALVRRN 164

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474351|ref|XP_003607460.1| hypothetical protein MTR_4g078240 [Medicago truncatula] gi|217071038|gb|ACJ83879.1| unknown [Medicago truncatula] gi|355508515|gb|AES89657.1| hypothetical protein MTR_4g078240 [Medicago truncatula] gi|388501324|gb|AFK38728.1| unknown [Medicago truncatula]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 113/162 (69%), Positives = 130/162 (80%), Gaps = 2/162 (1%)

Query: 8   EQEPTTPTSPTSSSSS-SYKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNL 66
           E+EPT+        +  SY   + IMSKRRTW CLF +VY  LL+SSWNFLKS+LSWYNL
Sbjct: 5   EEEPTSSIQQHQQQAPYSYMLLLNIMSKRRTWACLFFLVYGTLLASSWNFLKSMLSWYNL 64

Query: 67  QSHQNPSSGWPALYASVLLGAVFGLLSMVAALAVAVPATLVIWITVLVLLAFFGKPRTSL 126
           Q+ Q+ +SGWPA+YASVLLG VFGLLSMVAAL + VPA +V WIT++VLLAFFGKPR +L
Sbjct: 65  QA-QSSTSGWPAIYASVLLGTVFGLLSMVAALVIMVPAVMVTWITIVVLLAFFGKPRRTL 123

Query: 127 VIEGRKITKEIIGFVFKILLKEGNAVAAVCAVLGYFALVRRN 168
           V+EGRKIT EI  FV KILLKEGN VAAVCAVLGYF LVRRN
Sbjct: 124 VVEGRKITGEIFSFVIKILLKEGNVVAAVCAVLGYFVLVRRN 165

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542947|ref|XP_003539925.1| PREDICTED: uncharacterized protein LOC100811991 [Glycine max]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 110/165 (66%), Positives = 132/165 (80%), Gaps = 4/165 (2%)

Query: 4   QQQGEQEPTTPTSPTSSSSSSYKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSW 63
           +++ +Q+PT+P  P      +Y   + I SKRRTW CLF++VY  LL+SSWNFLKS LSW
Sbjct: 3   KEEEQQQPTSPMHP----PYAYTIILNIFSKRRTWACLFLLVYGTLLTSSWNFLKSTLSW 58

Query: 64  YNLQSHQNPSSGWPALYASVLLGAVFGLLSMVAALAVAVPATLVIWITVLVLLAFFGKPR 123
           YNLQ   + +S WPALYASVLLG VFG+LSMVAAL V VPA +V WIT++VLLAFFGKP+
Sbjct: 59  YNLQVESSTTSAWPALYASVLLGTVFGVLSMVAALVVMVPALVVTWITIVVLLAFFGKPK 118

Query: 124 TSLVIEGRKITKEIIGFVFKILLKEGNAVAAVCAVLGYFALVRRN 168
            +LV+EGRKIT+EI GFV + LLKEGN VAAVCAVLGYFALVRRN
Sbjct: 119 RTLVVEGRKITREIFGFVMRTLLKEGNFVAAVCAVLGYFALVRRN 163

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121928|ref|XP_002330688.1| predicted protein [Populus trichocarpa] gi|222872292|gb|EEF09423.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (563), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 119/138 (86%), Positives = 127/138 (92%)

Query: 32  MSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQSHQNPSSGWPALYASVLLGAVFGL 91
           MSKRRTWVCLFV+VYAILLSSSWN+LK+ILSWY  Q  QN +SGWPALYASVLLGAVFGL
Sbjct: 1   MSKRRTWVCLFVIVYAILLSSSWNWLKTILSWYKQQESQNSASGWPALYASVLLGAVFGL 60

Query: 92  LSMVAALAVAVPATLVIWITVLVLLAFFGKPRTSLVIEGRKITKEIIGFVFKILLKEGNA 151
           LSMVAALAVAVPATLVIWITV+V+L FFGKPR  LV+EGRKITKEIIGFVFK LLKEGNA
Sbjct: 61  LSMVAALAVAVPATLVIWITVVVMLTFFGKPRRVLVVEGRKITKEIIGFVFKTLLKEGNA 120

Query: 152 VAAVCAVLGYFALVRRNC 169
           VAAVCAVLGYF + RRNC
Sbjct: 121 VAAVCAVLGYFVIFRRNC 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412310|ref|NP_567259.1| uncharacterized protein [Arabidopsis thaliana] gi|4263047|gb|AAD15316.1| hypothetical protein [Arabidopsis thaliana] gi|7270683|emb|CAB77845.1| hypothetical protein [Arabidopsis thaliana] gi|91806630|gb|ABE66042.1| unknown [Arabidopsis thaliana] gi|332656943|gb|AEE82343.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  207 bits (528), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 103/157 (65%), Positives = 126/157 (80%), Gaps = 4/157 (2%)

Query: 16  SPTSSSSSSYKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQSHQNPS-- 73
           +  + S  SY  FI IMSKRRTWVCLF+ VYAIL+SSSWN L+S+L+WY LQ   + S  
Sbjct: 2   ADQTESPRSYHIFITIMSKRRTWVCLFIAVYAILVSSSWNLLRSVLNWYKLQYTSSNSDY 61

Query: 74  --SGWPALYASVLLGAVFGLLSMVAALAVAVPATLVIWITVLVLLAFFGKPRTSLVIEGR 131
             S  PA+YASV+LGA+FG +SMVAA+ VAVPA +VIWI+V+VLLAFFGK R  LV+EGR
Sbjct: 62  SPSRLPAVYASVVLGAMFGAMSMVAAMTVAVPAVMVIWISVVVLLAFFGKSRRVLVVEGR 121

Query: 132 KITKEIIGFVFKILLKEGNAVAAVCAVLGYFALVRRN 168
           KIT+E++GFVFK+LLKEGN VAA CAVL YF L+RR+
Sbjct: 122 KITREVVGFVFKVLLKEGNVVAAFCAVLAYFLLIRRD 158

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831333|gb|ABK28619.1| unknown [Arabidopsis thaliana]

 Score =  207 bits (528), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 104/158 (65%), Positives = 127/158 (80%), Gaps = 6/158 (3%)

Query: 16  SPTSSSSSSYKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQ-----SHQ 70
           +  + S  SY  FI IMSKRRTWVCLF+ VYAIL+SSSWN L+S+L+WY LQ     S  
Sbjct: 2   ADQTESPRSYHIFITIMSKRRTWVCLFIAVYAILVSSSWNLLRSVLNWYKLQYTSSNSDY 61

Query: 71  NPSSGWPALYASVLLGAVFGLLSMVAALAVAVPATLVIWITVLVLLAFFGKPRTSLVIEG 130
           +PS   PA+YASV+LGA+FG +SMVAA+ VAVPA +VIWI+V+VLLAFFGK R  LV+EG
Sbjct: 62  SPSR-LPAVYASVVLGAMFGAMSMVAAMTVAVPAVMVIWISVVVLLAFFGKSRRVLVVEG 120

Query: 131 RKITKEIIGFVFKILLKEGNAVAAVCAVLGYFALVRRN 168
           RKIT+E++GFVFK+LLKEGN VAA CAVL YF L+RR+
Sbjct: 121 RKITREVVGFVFKVLLKEGNVVAAFCAVLAYFLLIRRD 158

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593419|gb|AAM65386.1| unknown [Arabidopsis thaliana]

 Score =  198 bits (503), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 97/141 (68%), Positives = 118/141 (83%), Gaps = 4/141 (2%)

Query: 32  MSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQSHQNPS----SGWPALYASVLLGA 87
           MSKRRTWVCLF+ VYAIL+SSSWN L+S+L+WY LQ   + S    S  PA+YASV+LGA
Sbjct: 1   MSKRRTWVCLFIAVYAILVSSSWNLLRSVLNWYKLQYTSSNSDYSPSRLPAVYASVVLGA 60

Query: 88  VFGLLSMVAALAVAVPATLVIWITVLVLLAFFGKPRTSLVIEGRKITKEIIGFVFKILLK 147
           +FG +SMVAA+ VAVPA +VIWI+V+VLLAFFGK R  LV+EGRKIT+E++GFVFK+LLK
Sbjct: 61  MFGAMSMVAAMTVAVPAVMVIWISVVVLLAFFGKSRRVLVVEGRKITREVVGFVFKVLLK 120

Query: 148 EGNAVAAVCAVLGYFALVRRN 168
           EGN VAA CAVL YF L+RR+
Sbjct: 121 EGNVVAAFCAVLAYFLLIRRD 141

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809755|ref|XP_002872761.1| F21B7.33 [Arabidopsis lyrata subsp. lyrata] gi|297318598|gb|EFH49020.1| F21B7.33 [Arabidopsis lyrata subsp. lyrata]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 101/161 (62%), Positives = 122/161 (75%), Gaps = 8/161 (4%)

Query: 16  SPTSSSSSSYKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQ-------- 67
           +  + S  SY  FI+IMSKRRTWVCLF+ VYAILLSSSWN L+S+L+WY LQ        
Sbjct: 2   ADHTESPRSYLIFIKIMSKRRTWVCLFIAVYAILLSSSWNLLRSVLNWYKLQYTSSSSDS 61

Query: 68  SHQNPSSGWPALYASVLLGAVFGLLSMVAALAVAVPATLVIWITVLVLLAFFGKPRTSLV 127
           S     S  PA+YASV+LGA+FG +SMVAA  VAVPA +VIWI+V+VLL FFGK R  LV
Sbjct: 62  SPSPSPSRLPAVYASVVLGAMFGAMSMVAATTVAVPAVMVIWISVVVLLTFFGKSRRVLV 121

Query: 128 IEGRKITKEIIGFVFKILLKEGNAVAAVCAVLGYFALVRRN 168
           +EGRKIT+E++GFVFK+LLKEGN VA  CAV  YF L+RR+
Sbjct: 122 VEGRKITREVVGFVFKVLLKEGNVVAVFCAVFAYFLLIRRD 162

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18379130|ref|NP_563690.1| uncharacterized protein [Arabidopsis thaliana] gi|107738058|gb|ABF83624.1| At1g03730 [Arabidopsis thaliana] gi|332189482|gb|AEE27603.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  194 bits (494), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 113/162 (69%), Positives = 133/162 (82%), Gaps = 2/162 (1%)

Query: 9   QEPT-TPTSPTSSSSSSYKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQ 67
            +PT +P +   S   SY  F+RIMSKRRTWVCLFV VYAILL+SSWNFL S+LSWY LQ
Sbjct: 2   MDPTGSPRTSNGSPPRSYLIFMRIMSKRRTWVCLFVAVYAILLASSWNFLTSVLSWYKLQ 61

Query: 68  SHQNPS-SGWPALYASVLLGAVFGLLSMVAALAVAVPATLVIWITVLVLLAFFGKPRTSL 126
              +PS S  PA+YASV+LGAVFG +SMVAA AVAVPA +VIWI+V+VLLAFFGK R  L
Sbjct: 62  YTSSPSPSRLPAVYASVVLGAVFGAMSMVAAAAVAVPAVMVIWISVVVLLAFFGKSRRVL 121

Query: 127 VIEGRKITKEIIGFVFKILLKEGNAVAAVCAVLGYFALVRRN 168
           V+E RKIT+E+ GFVFK+LLKEGNAVAAVCAVLGYF L+R++
Sbjct: 122 VVEARKITREVFGFVFKVLLKEGNAVAAVCAVLGYFILIRKD 163

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9280654|gb|AAF86523.1|AC002560_16 F21B7.33 [Arabidopsis thaliana]

 Score =  194 bits (494), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 113/162 (69%), Positives = 133/162 (82%), Gaps = 2/162 (1%)

Query: 9   QEPT-TPTSPTSSSSSSYKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQ 67
            +PT +P +   S   SY  F+RIMSKRRTWVCLFV VYAILL+SSWNFL S+LSWY LQ
Sbjct: 1   MDPTGSPRTSNGSPPRSYLIFMRIMSKRRTWVCLFVAVYAILLASSWNFLTSVLSWYKLQ 60

Query: 68  SHQNPS-SGWPALYASVLLGAVFGLLSMVAALAVAVPATLVIWITVLVLLAFFGKPRTSL 126
              +PS S  PA+YASV+LGAVFG +SMVAA AVAVPA +VIWI+V+VLLAFFGK R  L
Sbjct: 61  YTSSPSPSRLPAVYASVVLGAVFGAMSMVAAAAVAVPAVMVIWISVVVLLAFFGKSRRVL 120

Query: 127 VIEGRKITKEIIGFVFKILLKEGNAVAAVCAVLGYFALVRRN 168
           V+E RKIT+E+ GFVFK+LLKEGNAVAAVCAVLGYF L+R++
Sbjct: 121 VVEARKITREVFGFVFKVLLKEGNAVAAVCAVLGYFILIRKD 162

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
TAIR|locus:2020728	167	AT1G03730 "AT1G03730" [Arabido	0.832	0.862	0.613	2.8e-41
TAIR|locus:2140685	162	AT4G03600 "AT4G03600" [Arabido	0.832	0.888	0.567	4.3e-38
TAIR|locus:2121397	158	AT4G28330 "AT4G28330" [Arabido	0.786	0.860	0.579	1.3e-36
TAIR|locus:2121402	159	AT4G28340 "AT4G28340" [Arabido	0.786	0.855	0.565	1.7e-34

TAIR|locus:2020728 AT1G03730 "AT1G03730" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 89/145 (61%), Positives = 102/145 (70%)

Query:    25 YKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQSHQNPS-SGWPALYASV 83
             Y  F+RIMSKRRTWVCLFV VYAILL+SSWNFL S+LSWY LQ   +PS S  PA+YASV
Sbjct:    19 YLIFMRIMSKRRTWVCLFVAVYAILLASSWNFLTSVLSWYKLQYTSSPSPSRLPAVYASV 78

Query:    84 LLGAVFGXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGKPRTSLVIEGRKITKEIIGFVFK 143
             +LGAVFG                          AFFGK R  LV+E RKIT+E+ GFVFK
Sbjct:    79 VLGAVFGAMSMVAAAAVAVPAVMVIWISVVVLLAFFGKSRRVLVVEARKITREVFGFVFK 138

Query:   144 ILLKEGNAVAAVCAVLGYFALVRRN 168
             +LLKEGNAVAAVCAVLGYF L+R++
Sbjct:   139 VLLKEGNAVAAVCAVLGYFILIRKD 163

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009693 "ethylene biosynthetic process" evidence=RCA

TAIR|locus:2140685 AT4G03600 "AT4G03600" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 84/148 (56%), Positives = 101/148 (68%)

Query:    25 YKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQ---SHQNPS-SGWPALY 80
             Y  FI IMSKRRTWVCLF+ VYAIL+SSSWN L+S+L+WY LQ   S+ + S S  PA+Y
Sbjct:    11 YHIFITIMSKRRTWVCLFIAVYAILVSSSWNLLRSVLNWYKLQYTSSNSDYSPSRLPAVY 70

Query:    81 ASVLLGAVFGXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGKPRTSLVIEGRKITKEIIGF 140
             ASV+LGA+FG                          AFFGK R  LV+EGRKIT+E++GF
Sbjct:    71 ASVVLGAMFGAMSMVAAMTVAVPAVMVIWISVVVLLAFFGKSRRVLVVEGRKITREVVGF 130

Query:   141 VFKILLKEGNAVAAVCAVLGYFALVRRN 168
             VFK+LLKEGN VAA CAVL YF L+RR+
Sbjct:   131 VFKVLLKEGNVVAAFCAVLAYFLLIRRD 158

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2121397 AT4G28330 "AT4G28330" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 80/138 (57%), Positives = 95/138 (68%)

Query:    25 YKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQSHQNPSSGWPALYASVL 84
             YK F+R++SKRRTW CLF+VVYAILLSSSWN L SI++WY  ++HQ  SSG PA+YASVL
Sbjct:    13 YKLFLRVISKRRTWACLFLVVYAILLSSSWNSLNSIVNWYG-ENHQT-SSGLPAIYASVL 70

Query:    85 LGAVFGXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGKPRTSLVIEGRKITKEIIGFVFKI 144
             LGAVFG                          AF GK R  +VIEGRK+TKEI GFVF++
Sbjct:    71 LGAVFGVLSMAAALFIAVPAIVVIWISVVVTMAFAGKSRKRVVIEGRKVTKEIAGFVFRV 130

Query:   145 LLKEGNAVAAVCAVLGYF 162
             LLKEGN VA +CA+L YF
Sbjct:   131 LLKEGNFVALLCALLAYF 148

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2121402 AT4G28340 "AT4G28340" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 78/138 (56%), Positives = 94/138 (68%)

Query:    25 YKWFIRIMSKRRTWVCLFVVVYAILLSSSWNFLKSILSWYNLQSHQNPSSGWPALYASVL 84
             YK F+R++SKRRTWVCLF+VVYA+LLSSS N L SI++WY  ++HQ  SSG PA+YASVL
Sbjct:    13 YKLFLRVISKRRTWVCLFLVVYAVLLSSSRNSLNSIVNWYG-ENHQT-SSGLPAIYASVL 70

Query:    85 LGAVFGXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGKPRTSLVIEGRKITKEIIGFVFKI 144
             LGAVFG                          AF  K R  +VIEGRK+TKEI G+VFK+
Sbjct:    71 LGAVFGVLSMAAALFIAVPAIVVIWISVVVTIAFPVKSRKKVVIEGRKVTKEIAGYVFKV 130

Query:   145 LLKEGNAVAAVCAVLGYF 162
             LLKEGN VA +CAV+ YF
Sbjct:   131 LLKEGNFVALLCAVIAYF 148


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.141   0.456    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      173       124   0.00091  102 3  11 22  0.42    30
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  143 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.74u 0.16s 10.90t   Elapsed:  00:00:01
  Total cpu time:  10.74u 0.16s 10.90t   Elapsed:  00:00:01
  Start:  Sat May 11 14:17:24 2013   End:  Sat May 11 14:17:25 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_142000013 hypothetical protein (141 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00