Citrus Sinensis ID: 043456

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFKAKPAPEAKGKKSKA
cccHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEcccccccccccHHHHHHHccccccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHcccEEccccccccHHHHHHcccccccccHHHccccccccEEEEccccHHHHHHHccccccccccccccccccccHHHHccccccccccHHHHcccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHcccEEEEccccccEEEEEcccccHHHHHHHccccccccccccccccEEEcccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
cccHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEccccccccccccHHHHHHHcccccHHHHHHHcccHEEEEccHHHHHHHHHHHHHHHHHHHccccEEcccEEEcHHHccccccccccHHHHEEEccccccEEEccccHHHHHHcccccEEEHHHccEEEEEEEEEEccccccccccccccccccEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccEEEEEEEEEHHHcEEEEEEEEEEEEcccHHHHccEEcccccccccccEEEEEcccHHHHHHHHHHHHHHHccccccEccHHHcHcccccEEEccccccccHcccccccc
mldinlfreekggipekIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLvhdsvpvsndeaNNAIVRTwgekrtepklkNHVELVELLGIadlkkgadiaggrgfylkgdgvRLNQALINFGLDFlekksytllhtpFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEqplcayhiddwihpselpiryagysscfrkeagshgrdtlgiFRVHQFEKVEQFcitspngndswdMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLdleawfpasqtyrelvscsnctdyqSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILEnyqkedgvevpevlqpfmggktflpfkakpapeakgkkska
mldinlfreekggipekiresqrrrfasvdLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTneikqqsadkeVEVREAWAAVKAKLEVVGNLvhdsvpvsndeanNAIVRtwgekrtepklkNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQtyrelvscsnctdYQSRRLEIRYgqkksneqTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKtflpfkakpapeakgkkska
MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGalndaaakkldleaWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLpfkakpapeakgkkska
*************************FASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKL************************EVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYG*******TKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLP****************
MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQF**********************************************VREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQ*****QTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLP****************
MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNE***********VREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFKAK************
MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFK**************
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MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKxxxxxxxxxxxxxxxxxxxxxxxxxxxxGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFKAKPAPEAKGKKSKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query447 2.2.26 [Sep-21-2011]
O81983438 Serine--tRNA ligase OS=He N/A no 0.973 0.993 0.811 0.0
Q39230451 Serine--tRNA ligase OS=Ar yes no 1.0 0.991 0.791 0.0
Q7KWQ2451 Serine--tRNA ligase, cyto yes no 0.977 0.968 0.569 1e-143
O14018450 Serine--tRNA ligase, cyto yes no 0.984 0.977 0.549 1e-136
Q9HGT6462 Serine--tRNA ligase, cyto N/A no 0.988 0.956 0.544 1e-132
Q18678487 Probable serine--tRNA lig yes no 0.988 0.907 0.514 1e-130
Q6P799512 Serine--tRNA ligase, cyto yes no 0.973 0.849 0.505 1e-128
Q4R4U9514 Serine--tRNA ligase, cyto N/A no 0.973 0.846 0.507 1e-127
P26638512 Serine--tRNA ligase, cyto yes no 0.966 0.843 0.502 1e-127
P07284462 Serine--tRNA ligase, cyto yes no 0.959 0.928 0.539 1e-127
>sp|O81983|SYS_HELAN Serine--tRNA ligase OS=Helianthus annuus PE=2 SV=1 Back     alignment and function desciption
 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/435 (81%), Positives = 393/435 (90%)

Query: 1   MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKIN 60
           MLDINLFREEKGG PE +RESQRRR ASV++VDEII LDK+WRQ QF++E  RK+ N+IN
Sbjct: 1   MLDINLFREEKGGNPEIVRESQRRRGASVEIVDEIIKLDKEWRQRQFELEQLRKDFNRIN 60

Query: 61  KQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSN 120
           K++A+L++SG D S ++  T E K  +A K+ EV+EA  A+ +KLE VGNLVHDSVPVSN
Sbjct: 61  KEVAKLRISGGDASSLIKNTEENKDSTAKKQAEVQEARTALYSKLETVGNLVHDSVPVSN 120

Query: 121 DEANNAIVRTWGEKRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQAL 180
           DEA+NA+VRTWGE+R E  LKNHVELVELLGIADLKKGA++AGGRG+YLKGDGVRLNQAL
Sbjct: 121 DEADNAVVRTWGERREETNLKNHVELVELLGIADLKKGANVAGGRGYYLKGDGVRLNQAL 180

Query: 181 INFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPL 240
           INFGLDFLEK+ YT L TPFFMRK++M KCAQLAQFDEELYKVTGEGDDKYLIATAEQPL
Sbjct: 181 INFGLDFLEKRKYTALQTPFFMRKDIMGKCAQLAQFDEELYKVTGEGDDKYLIATAEQPL 240

Query: 241 CAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGND 300
           CAYHIDDWIHP+ELP+RYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFC+T P+GND
Sbjct: 241 CAYHIDDWIHPNELPLRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCLTKPSGND 300

Query: 301 SWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCS 360
           SW+MHEEMIKNSEEFYQMLK+PYQVV+IVSGALNDAAAKK DLEAWFPAS+TYRELVSCS
Sbjct: 301 SWEMHEEMIKNSEEFYQMLKLPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCS 360

Query: 361 NCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVL 420
           NCTDYQSR+LEIR GQKK NEQ KQY HLLNSTLTATERT+CCILENYQ E GV +PEVL
Sbjct: 361 NCTDYQSRKLEIRCGQKKGNEQAKQYCHLLNSTLTATERTLCCILENYQTEKGVAIPEVL 420

Query: 421 QPFMGGKTFLPFKAK 435
           QPFMGGKTFL F  K
Sbjct: 421 QPFMGGKTFLDFLKK 435
Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).
Helianthus annuus (taxid: 4232)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q39230|SYS_ARATH Serine--tRNA ligase OS=Arabidopsis thaliana GN=At5g27470 PE=2 SV=1 Back     alignment and function description
>sp|Q7KWQ2|SYSC_DICDI Serine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=serS PE=1 SV=1 Back     alignment and function description
>sp|O14018|SYSC_SCHPO Serine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC29A4.15 PE=3 SV=1 Back     alignment and function description
>sp|Q9HGT6|SYSC_CANAL Serine--tRNA ligase, cytoplasmic OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SES1 PE=1 SV=1 Back     alignment and function description
>sp|Q18678|SYSC_CAEEL Probable serine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=srs-2 PE=3 SV=1 Back     alignment and function description
>sp|Q6P799|SYSC_RAT Serine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Sars PE=1 SV=3 Back     alignment and function description
>sp|Q4R4U9|SYSC_MACFA Serine--tRNA ligase, cytoplasmic OS=Macaca fascicularis GN=SARS PE=2 SV=3 Back     alignment and function description
>sp|P26638|SYSC_MOUSE Serine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Sars PE=2 SV=3 Back     alignment and function description
>sp|P07284|SYSC_YEAST Serine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SES1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query447
225450981447 PREDICTED: seryl-tRNA synthetase [Vitis 1.0 1.0 0.854 0.0
356535091447 PREDICTED: seryl-tRNA synthetase-like [G 1.0 1.0 0.823 0.0
356576773447 PREDICTED: seryl-tRNA synthetase-like [G 1.0 1.0 0.812 0.0
255546678447 seryl-tRNA synthetase, putative [Ricinus 1.0 1.0 0.809 0.0
224081391447 predicted protein [Populus trichocarpa] 1.0 1.0 0.798 0.0
357441653447 Seryl-tRNA synthetase [Medicago truncatu 1.0 1.0 0.789 0.0
6094413438 RecName: Full=Serine--tRNA ligase; AltNa 0.973 0.993 0.811 0.0
255557773447 seryl-tRNA synthetase, putative [Ricinus 1.0 1.0 0.798 0.0
15240939451 seryl-tRNA synthetase [Arabidopsis thali 1.0 0.991 0.791 0.0
297812971451 seryl-tRNA synthetase [Arabidopsis lyrat 1.0 0.991 0.782 0.0
>gi|225450981|ref|XP_002284787.1| PREDICTED: seryl-tRNA synthetase [Vitis vinifera] gi|296088317|emb|CBI36762.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  817 bits (2110), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/447 (85%), Positives = 418/447 (93%)

Query: 1   MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKIN 60
           MLDINLFRE+KG  PE IRESQRRR+A+V+LVDE+I LDK+WRQ QF+ EN RKE NKIN
Sbjct: 1   MLDINLFREDKGHNPEIIRESQRRRYANVELVDEVIHLDKEWRQRQFEYENLRKEFNKIN 60

Query: 61  KQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSN 120
           KQ+A+LK+SG+D SEM+  T+E K+ ++ KE EV+EA AA+ +KLE++GNLVHDSVPVSN
Sbjct: 61  KQVAKLKISGEDASEMIKSTDENKRLTSKKEAEVQEALAALNSKLEIIGNLVHDSVPVSN 120

Query: 121 DEANNAIVRTWGEKRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQAL 180
           DEANNA++R+WGEK+ EPKLKNHVELVELLGIADLKKGA+IAGGRGFYLKGDGVRLNQAL
Sbjct: 121 DEANNAVIRSWGEKKVEPKLKNHVELVELLGIADLKKGANIAGGRGFYLKGDGVRLNQAL 180

Query: 181 INFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPL 240
           INFGLDFLEK+ YT L TPFFMRK++MAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPL
Sbjct: 181 INFGLDFLEKRGYTALQTPFFMRKDIMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPL 240

Query: 241 CAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGND 300
           CAYH+DDWIHPS+LP+RYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGND
Sbjct: 241 CAYHLDDWIHPSQLPLRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGND 300

Query: 301 SWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCS 360
           SWDMHEEMIKNSE+FY+ML IPYQVVAIVSGALNDAAAKK DLE WFPASQTYRELVSCS
Sbjct: 301 SWDMHEEMIKNSEDFYKMLNIPYQVVAIVSGALNDAAAKKYDLEGWFPASQTYRELVSCS 360

Query: 361 NCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVL 420
           NCTDYQSRRLEIRYGQKKSNEQ KQYVHLLNSTLTATERTICCILENYQKEDGVEVPE L
Sbjct: 361 NCTDYQSRRLEIRYGQKKSNEQIKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEPL 420

Query: 421 QPFMGGKTFLPFKAKPAPEAKGKKSKA 447
           +PFMGGKTFLPF+  PA EAKGKKSKA
Sbjct: 421 RPFMGGKTFLPFQTSPATEAKGKKSKA 447

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356535091|ref|XP_003536082.1| PREDICTED: seryl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|356576773|ref|XP_003556504.1| PREDICTED: seryl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|255546678|ref|XP_002514398.1| seryl-tRNA synthetase, putative [Ricinus communis] gi|223546495|gb|EEF47994.1| seryl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224081391|ref|XP_002306393.1| predicted protein [Populus trichocarpa] gi|222855842|gb|EEE93389.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357441653|ref|XP_003591104.1| Seryl-tRNA synthetase [Medicago truncatula] gi|355480152|gb|AES61355.1| Seryl-tRNA synthetase [Medicago truncatula] Back     alignment and taxonomy information
>gi|6094413|sp|O81983.1|SYS_HELAN RecName: Full=Serine--tRNA ligase; AltName: Full=Seryl-tRNA synthetase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase gi|3451411|emb|CAB11470.1| seryl-tRNA synthetase [Helianthus annuus] Back     alignment and taxonomy information
>gi|255557773|ref|XP_002519916.1| seryl-tRNA synthetase, putative [Ricinus communis] gi|223540962|gb|EEF42520.1| seryl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15240939|ref|NP_198099.1| seryl-tRNA synthetase [Arabidopsis thaliana] gi|2501056|sp|Q39230.1|SYS_ARATH RecName: Full=Serine--tRNA ligase; AltName: Full=Seryl-tRNA synthetase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase gi|13507571|gb|AAK28648.1|AF360352_1 putative seryl-tRNA synthetase [Arabidopsis thaliana] gi|1359497|emb|CAA94388.1| seryl-tRNA Synthetase [Arabidopsis thaliana] gi|15293241|gb|AAK93731.1| putative seryl-tRNA synthetase [Arabidopsis thaliana] gi|332006309|gb|AED93692.1| seryl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297812971|ref|XP_002874369.1| seryl-tRNA synthetase [Arabidopsis lyrata subsp. lyrata] gi|297320206|gb|EFH50628.1| seryl-tRNA synthetase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query447
TAIR|locus:2146400451 AT5G27470 [Arabidopsis thalian 0.961 0.953 0.764 2.2e-183
DICTYBASE|DDB_G0272660451 serS "seryl-tRNA synthetase" [ 0.953 0.944 0.547 4.3e-125
POMBASE|SPAC29A4.15450 SPAC29A4.15 "cytoplasmic serin 0.948 0.942 0.530 4.2e-118
ZFIN|ZDB-GENE-040831-1515 sars "seryl-tRNA synthetase" [ 0.713 0.619 0.569 4.3e-113
CGD|CAL0004049458 SES1 [Candida albicans (taxid: 0.930 0.908 0.524 2.2e-112
UNIPROTKB|Q5AEJ9458 SES1 "Potential serine tRNA sy 0.930 0.908 0.524 2.2e-112
WB|WBGene00005663487 sars-1 [Caenorhabditis elegans 0.818 0.751 0.509 2.7e-111
SGD|S000002430462 SES1 "Cytosolic seryl-tRNA syn 0.948 0.917 0.512 1.1e-110
RGD|628813512 Sars "seryl-tRNA synthetase" [ 0.713 0.623 0.563 2.4e-110
UNIPROTKB|Q6P799512 Sars "Serine--tRNA ligase, cyt 0.713 0.623 0.563 2.4e-110
TAIR|locus:2146400 AT5G27470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1779 (631.3 bits), Expect = 2.2e-183, P = 2.2e-183
 Identities = 331/433 (76%), Positives = 381/433 (87%)

Query:     1 MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKIN 60
             MLDINLFREEKG  PE IRESQRRRFASV++VDEII LDK+WRQ QF+V+++RKE NK+N
Sbjct:     1 MLDINLFREEKGNNPEIIRESQRRRFASVEIVDEIIKLDKEWRQRQFEVDSFRKEFNKLN 60

Query:    61 KQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSN 120
             KQ+AQLK+  +D SE++ +T + KQ S  KE EVREA+AA+KAKLE VGNLVHDSVPV  
Sbjct:    61 KQVAQLKIKKEDASEIIQQTEKNKQDSTAKEAEVREAYAALKAKLEQVGNLVHDSVPVDK 120

Query:   121 DEANNAIVRTWGEKR-TEP--KLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLN 177
             DEANN +++ WGEKR + P  KLKNHV+LVELLGIAD K+GA+IAG RGF+LKGDG+ LN
Sbjct:   121 DEANNLVIKLWGEKRFSTPGLKLKNHVDLVELLGIADTKRGAEIAGARGFFLKGDGLMLN 180

Query:   178 QALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAE 237
             QALINFGL FL+K+ +T L  PFFMRK+VMAKCAQLAQFDEELYKVTGEGDDKYLIATAE
Sbjct:   181 QALINFGLTFLKKRGFTGLQPPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATAE 240

Query:   238 QPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPN 297
             QPLCAYHID+WIHP+ELP+RYAGYSSCFRKEAGSHGRDTLGIFRVHQFEK+EQFCIT PN
Sbjct:   241 QPLCAYHIDEWIHPTELPLRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKIEQFCITGPN 300

Query:   298 GNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGXXXXXXXXXXXXXXWFPASQTYRELV 357
              N SW+M +EM+KNSE+FYQ LK+PYQ+V+IVSG              WFP+S+T+RELV
Sbjct:   301 ENASWEMLDEMMKNSEDFYQALKLPYQIVSIVSGALNDAAAKKYDLEAWFPSSETFRELV 360

Query:   358 SCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVP 417
             SCSNCTDYQ+RRLEIRYGQKKSNEQTKQYVH+LNSTLTATERTICCILENYQ+EDGV++P
Sbjct:   361 SCSNCTDYQARRLEIRYGQKKSNEQTKQYVHMLNSTLTATERTICCILENYQREDGVDIP 420

Query:   418 EVLQPFMGGKTFL 430
             EVLQPFMGG+TFL
Sbjct:   421 EVLQPFMGGETFL 433
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0004828 "serine-tRNA ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=ISS;IDA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
DICTYBASE|DDB_G0272660 serS "seryl-tRNA synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPAC29A4.15 SPAC29A4.15 "cytoplasmic serine-tRNA ligase Srs1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040831-1 sars "seryl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
CGD|CAL0004049 SES1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AEJ9 SES1 "Potential serine tRNA synthetase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
WB|WBGene00005663 sars-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
SGD|S000002430 SES1 "Cytosolic seryl-tRNA synthetase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
RGD|628813 Sars "seryl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P799 Sars "Serine--tRNA ligase, cytoplasmic" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4J8I4SYS_SULAC6, ., 1, ., 1, ., 1, 10.42390.89700.8755yesno
Q2FS27SYS_METHJ6, ., 1, ., 1, ., 1, 10.41240.94180.9905yesno
O66647SYS_AQUAE6, ., 1, ., 1, ., 1, 10.42060.93950.9882yesno
C3NEQ7SYS_SULIY6, ., 1, ., 1, ., 1, 10.41240.89930.8796yesno
Q8U1K2SYS_PYRFU6, ., 1, ., 1, ., 1, 10.40300.95070.9340yesno
Q5JE75SYS_PYRKO6, ., 1, ., 1, ., 1, 10.40780.94630.9296yesno
A0RTS8SYS_CENSY6, ., 1, ., 1, ., 1, 10.41310.92390.9880yesno
O28244SYS_ARCFU6, ., 1, ., 1, ., 1, 10.42590.90150.8896yesno
Q4R4U9SYSC_MACFA6, ., 1, ., 1, ., 1, 10.50730.97310.8463N/Ano
Q5R9K9SYSC_PONAB6, ., 1, ., 1, ., 1, 10.50310.97310.8463yesno
Q979Z3SYS_THEVO6, ., 1, ., 1, ., 1, 10.37890.92390.9365yesno
P49591SYSC_HUMAN6, ., 1, ., 1, ., 1, 10.50310.97310.8463yesno
Q82FK8SYS1_STRAW6, ., 1, ., 1, ., 1, 10.39220.93730.9858yesno
Q6P799SYSC_RAT6, ., 1, ., 1, ., 1, 10.50520.97310.8496yesno
Q0W8S5SYS_UNCMA6, ., 1, ., 1, ., 1, 10.41240.94180.9905yesno
Q970Y4SYS_SULTO6, ., 1, ., 1, ., 1, 10.41700.91270.9006yesno
C5A226SYS_THEGJ6, ., 1, ., 1, ., 1, 10.40990.94630.9296yesno
Q7KWQ2SYSC_DICDI6, ., 1, ., 1, ., 1, 10.56910.97760.9689yesno
C3NGY7SYS_SULIN6, ., 1, ., 1, ., 1, 10.41240.89930.8796yesno
C6A4A3SYS_THESM6, ., 1, ., 1, ., 1, 10.40650.94180.9252yesno
C3MQH9SYS_SULIL6, ., 1, ., 1, ., 1, 10.41240.89930.8796yesno
C4KHR4SYS_SULIK6, ., 1, ., 1, ., 1, 10.41240.89930.8796yesno
A9A4V3SYS_NITMS6, ., 1, ., 1, ., 1, 10.43580.93060.9881yesno
P07284SYSC_YEAST6, ., 1, ., 1, ., 1, 10.53910.95970.9285yesno
Q18678SYSC_CAEEL6, ., 1, ., 1, ., 1, 10.51430.98880.9075yesno
Q5HK07SYS_STAEQ6, ., 1, ., 1, ., 1, 10.38740.93510.9766yesno
O33780SYS_SULSO6, ., 1, ., 1, ., 1, 10.41010.89930.8796yesno
Q9GMB8SYSC_BOVIN6, ., 1, ., 1, ., 1, 10.51020.99320.8638yesno
Q8SS48SYS_ENCCU6, ., 1, ., 1, ., 1, 10.46860.93280.9720yesno
A2SRC6SYS_METLZ6, ., 1, ., 1, ., 1, 10.40090.94180.9905yesno
A4YI40SYS_METS56, ., 1, ., 1, ., 1, 10.40320.89930.8835yesno
Q6KZN5SYS_PICTO6, ., 1, ., 1, ., 1, 10.39640.91940.9256yesno
C3MW57SYS_SULIM6, ., 1, ., 1, ., 1, 10.41240.89930.8796yesno
Q39230SYS_ARATH6, ., 1, ., 1, ., 1, 10.79151.00.9911yesno
P26638SYSC_MOUSE6, ., 1, ., 1, ., 1, 10.50200.96640.8437yesno
Q9HGT6SYSC_CANAL6, ., 1, ., 1, ., 1, 10.54400.98880.9567N/Ano
B8CZZ9SYS_HALOH6, ., 1, ., 1, ., 1, 10.38790.93950.9952yesno
Q2NEU9SYS_METST6, ., 1, ., 1, ., 1, 10.48970.93950.9905yesno
Q2RMH8SYS_MOOTA6, ., 1, ., 1, ., 1, 10.38510.93280.9765yesno
Q9ZBX1SYS_STRCO6, ., 1, ., 1, ., 1, 10.39140.93510.9835yesno
O14018SYSC_SCHPO6, ., 1, ., 1, ., 1, 10.54940.98430.9777yesno
B1L5G0SYS_KORCO6, ., 1, ., 1, ., 1, 10.41370.89260.875yesno
A7I890SYS_METB66, ., 1, ., 1, ., 1, 10.40420.90600.9529yesno
Q8CU95SYS_STAES6, ., 1, ., 1, ., 1, 10.38740.93510.9766yesno
O81983SYS_HELAN6, ., 1, ., 1, ., 1, 10.81140.97310.9931N/Ano
A3CTP4SYS_METMJ6, ., 1, ., 1, ., 1, 10.39860.94180.9905yesno
C3N6A0SYS_SULIA6, ., 1, ., 1, ., 1, 10.41240.89930.8796yesno
B6YWW5SYS_THEON6, ., 1, ., 1, ., 1, 10.40780.94630.9256yesno
Q9UZ21SYS_PYRAB6, ., 1, ., 1, ., 1, 10.40950.95070.9340yesno
O58441SYS_PYRHO6, ., 1, ., 1, ., 1, 10.41610.95070.9340yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.110.979
3rd Layer6.1.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
PLN02678448 PLN02678, PLN02678, seryl-tRNA synthetase 0.0
PRK05431425 PRK05431, PRK05431, seryl-tRNA synthetase; Provisi 0.0
cd00770297 cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) 0.0
COG0172429 COG0172, SerS, Seryl-tRNA synthetase [Translation, 0.0
TIGR00414418 TIGR00414, serS, seryl-tRNA synthetase 1e-165
PLN02320502 PLN02320, PLN02320, seryl-tRNA synthetase 9e-84
pfam00587171 pfam00587, tRNA-synt_2b, tRNA synthetase class II 8e-49
pfam02403108 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-t 2e-27
cd00670235 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro 2e-19
cd00768211 cd00768, class_II_aaRS-like_core, Class II tRNA am 2e-09
COG0441589 COG0441, ThrS, Threonyl-tRNA synthetase [Translati 7e-06
cd00771298 cd00771, ThrRS_core, Threonyl-tRNA synthetase (Thr 0.002
TIGR00418563 TIGR00418, thrS, threonyl-tRNA synthetase 0.004
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase Back     alignment and domain information 
 Score =  909 bits (2350), Expect = 0.0
 Identities = 360/447 (80%), Positives = 405/447 (90%)

Query: 1   MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKIN 60
           MLDINLFREEKGG PE IRESQRRRFASV+LVDE+I+LDK+WRQ QF++++ RKE NK+N
Sbjct: 1   MLDINLFREEKGGDPELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLN 60

Query: 61  KQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSN 120
           K++A+LK++ +D +E++ +T E+K++  +KE EV+EA AA+ AKL+ +GNLVHDSVPVSN
Sbjct: 61  KEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVPVSN 120

Query: 121 DEANNAIVRTWGEKRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQAL 180
           DEANNA+VRTWGEKR EPKLKNHV+LVELLGI D ++GAD+AGGRG+YLKG GV LNQAL
Sbjct: 121 DEANNAVVRTWGEKRQEPKLKNHVDLVELLGIVDTERGADVAGGRGYYLKGAGVLLNQAL 180

Query: 181 INFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPL 240
           INFGL FL K+ YT L TPFFMRK+VMAKCAQLAQFDEELYKVTGEGDDKYLIAT+EQPL
Sbjct: 181 INFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATSEQPL 240

Query: 241 CAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGND 300
           CAYH  DWI P ELPIRYAGYS+CFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGN+
Sbjct: 241 CAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNE 300

Query: 301 SWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCS 360
           SW+MHEEM+KNSE+FYQ L IPYQVV+IVSGALNDAAAKK DLEAWFPAS+TYRELVSCS
Sbjct: 301 SWEMHEEMLKNSEDFYQSLGIPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCS 360

Query: 361 NCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVL 420
           NCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERT+CCILENYQ EDGV VPEVL
Sbjct: 361 NCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTLCCILENYQTEDGVRVPEVL 420

Query: 421 QPFMGGKTFLPFKAKPAPEAKGKKSKA 447
           QPFMGG  FLPFK KP  + KGKK K 
Sbjct: 421 QPFMGGIEFLPFKKKPPAKGKGKKKKK 447

Length = 448
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238393 cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|177954 PLN02320, PLN02320, seryl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) Back     alignment and domain information
>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain Back     alignment and domain information
>gnl|CDD|238359 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238394 cd00771, ThrRS_core, Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 447
PLN02678448 seryl-tRNA synthetase 100.0
PLN02320502 seryl-tRNA synthetase 100.0
COG0172429 SerS Seryl-tRNA synthetase [Translation, ribosomal 100.0
PRK05431425 seryl-tRNA synthetase; Provisional 100.0
KOG2509455 consensus Seryl-tRNA synthetase [Translation, ribo 100.0
TIGR00414418 serS seryl-tRNA synthetase. This model represents 100.0
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 100.0
PRK00960517 seryl-tRNA synthetase; Provisional 100.0
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 100.0
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 100.0
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 100.0
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 100.0
PLN02837614 threonine-tRNA ligase 100.0
PRK08661 477 prolyl-tRNA synthetase; Provisional 100.0
PRK03991613 threonyl-tRNA synthetase; Validated 100.0
TIGR00415520 serS_MJ seryl-tRNA synthetase, Methanococcus janna 100.0
TIGR00408 472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 100.0
KOG2324 457 consensus Prolyl-tRNA synthetase [Translation, rib 100.0
PRK12325439 prolyl-tRNA synthetase; Provisional 100.0
PRK09194 565 prolyl-tRNA synthetase; Provisional 100.0
TIGR00409 568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 100.0
PRK14799545 thrS threonyl-tRNA synthetase; Provisional 100.0
PLN02908686 threonyl-tRNA synthetase 100.0
COG0441589 ThrS Threonyl-tRNA synthetase [Translation, riboso 100.0
PRK12444639 threonyl-tRNA synthetase; Reviewed 100.0
KOG1637560 consensus Threonyl-tRNA synthetase [Translation, r 100.0
TIGR00418563 thrS threonyl-tRNA synthetase. This model represen 100.0
COG0442 500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 100.0
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 100.0
PRK04173456 glycyl-tRNA synthetase; Provisional 100.0
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 100.0
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 100.0
PRK00413638 thrS threonyl-tRNA synthetase; Reviewed 100.0
TIGR00389551 glyS_dimeric glycyl-tRNA synthetase, dimeric type. 99.93
KOG4163 551 consensus Prolyl-tRNA synthetase [Translation, rib 99.93
PRK14894 539 glycyl-tRNA synthetase; Provisional 99.92
PLN02734684 glycyl-tRNA synthetase 99.92
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 99.92
PF02403108 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom 99.89
COG0423558 GRS1 Glycyl-tRNA synthetase (class II) [Translatio 99.89
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.84
PRK07080317 hypothetical protein; Validated 99.7
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 99.59
CHL00201 430 syh histidine-tRNA synthetase; Provisional 99.55
PRK00037 412 hisS histidyl-tRNA synthetase; Reviewed 99.53
TIGR00442 397 hisS histidyl-tRNA synthetase. This model finds a 99.48
KOG2298 599 consensus Glycyl-tRNA synthetase and related class 99.35
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 99.31
PLN02530 487 histidine-tRNA ligase 99.29
TIGR00443314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 99.28
PRK12420 423 histidyl-tRNA synthetase; Provisional 99.24
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 99.13
COG0124 429 HisS Histidyl-tRNA synthetase [Translation, riboso 99.07
PRK12292 391 hisZ ATP phosphoribosyltransferase regulatory subu 98.9
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 98.8
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 98.77
PLN02972 763 Histidyl-tRNA synthetase 98.7
PF13393311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 98.68
PRK12421 392 ATP phosphoribosyltransferase regulatory subunit; 98.67
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 98.65
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 98.65
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 98.61
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 98.59
PRK12295 373 hisZ ATP phosphoribosyltransferase regulatory subu 98.53
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 98.34
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 98.2
PRK09350306 poxB regulator PoxA; Provisional 98.04
COG0173 585 AspS Aspartyl-tRNA synthetase [Translation, riboso 97.97
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 97.94
PF00152335 tRNA-synt_2: tRNA synthetases class II (D, K and N 97.81
TIGR00459 583 aspS_bact aspartyl-tRNA synthetase, bacterial type 97.79
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 97.75
KOG2411 628 consensus Aspartyl-tRNA synthetase, mitochondrial 97.73
PRK00476 588 aspS aspartyl-tRNA synthetase; Validated 97.66
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 97.66
PLN02903 652 aminoacyl-tRNA ligase 97.64
COG3705 390 HisZ ATP phosphoribosyltransferase involved in his 97.63
PRK00484491 lysS lysyl-tRNA synthetase; Reviewed 97.63
TIGR00458428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 97.62
PRK05159437 aspC aspartyl-tRNA synthetase; Provisional 97.62
cd00775329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 97.6
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 97.6
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 97.58
PRK06462335 asparagine synthetase A; Reviewed 97.56
TIGR00470 533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 97.53
TIGR00499496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 97.52
PTZ00417585 lysine-tRNA ligase; Provisional 97.51
PLN02850530 aspartate-tRNA ligase 97.48
PLN02502553 lysyl-tRNA synthetase 97.46
PRK12445505 lysyl-tRNA synthetase; Reviewed 97.44
TIGR00457453 asnS asparaginyl-tRNA synthetase. In a multiple se 97.42
PTZ00385 659 lysyl-tRNA synthetase; Provisional 97.41
PTZ00425586 asparagine-tRNA ligase; Provisional 97.37
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 97.35
PTZ00401550 aspartyl-tRNA synthetase; Provisional 97.26
PLN02221 572 asparaginyl-tRNA synthetase 97.16
PRK029831094 lysS lysyl-tRNA synthetase; Provisional 97.14
COG0442500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 97.13
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 97.1
KOG1936 518 consensus Histidyl-tRNA synthetase [Translation, r 97.04
COG0017435 AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl 96.99
PLN02532 633 asparagine-tRNA synthetase 96.94
PLN02603565 asparaginyl-tRNA synthetase 96.81
PRK12294272 hisZ ATP phosphoribosyltransferase regulatory subu 96.74
PLN02788402 phenylalanine-tRNA synthetase 96.54
COG2269322 Truncated, possibly inactive, lysyl-tRNA synthetas 96.53
COG1190502 LysU Lysyl-tRNA synthetase (class II) [Translation 95.77
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 95.3
KOG1885560 consensus Lysyl-tRNA synthetase (class II) [Transl 94.44
TIGR00469 460 pheS_mito phenylalanyl-tRNA synthetase, mitochondr 94.03
KOG0554446 consensus Asparaginyl-tRNA synthetase (mitochondri 93.78
cd00769198 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR 93.71
COG2024 536 Phenylalanyl-tRNA synthetase alpha subunit (archae 93.49
TIGR03752472 conj_TIGR03752 integrating conjugative element pro 92.92
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 92.8
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 92.08
cd02426128 Pol_gamma_b_Cterm C-terminal domain of mitochondri 91.54
COG4026290 Uncharacterized protein containing TOPRIM domain, 91.44
KOG0555545 consensus Asparaginyl-tRNA synthetase [Translation 91.3
COG3883265 Uncharacterized protein conserved in bacteria [Fun 91.11
KOG0556533 consensus Aspartyl-tRNA synthetase [Translation, r 90.66
TIGR00471551 pheT_arch phenylalanyl-tRNA synthetase, beta subun 90.01
PRK10884206 SH3 domain-containing protein; Provisional 87.61
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 87.24
PF01920106 Prefoldin_2: Prefoldin subunit; InterPro: IPR00277 85.67
PF05278269 PEARLI-4: Arabidopsis phospholipase-like protein ( 85.61
PF03962188 Mnd1: Mnd1 family; InterPro: IPR005647 This family 85.26
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 85.01
PF1232974 TMF_DNA_bd: TATA element modulatory factor 1 DNA b 84.81
PF06810155 Phage_GP20: Phage minor structural protein GP20; I 84.27
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 84.22
PRK06253 529 O-phosphoseryl-tRNA synthetase; Reviewed 84.15
PF13870177 DUF4201: Domain of unknown function (DUF4201) 83.7
PRK11637428 AmiB activator; Provisional 83.61
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 83.36
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 83.3
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 82.9
KOG2784483 consensus Phenylalanyl-tRNA synthetase, beta subun 82.2
PRK09343121 prefoldin subunit beta; Provisional 81.7
COG1382119 GimC Prefoldin, chaperonin cofactor [Posttranslati 81.55
KOG4196135 consensus bZIP transcription factor MafK [Transcri 81.45
PF05266190 DUF724: Protein of unknown function (DUF724); Inte 81.33
PRK11637428 AmiB activator; Provisional 81.26
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information 
Probab=100.00  E-value=3.6e-124  Score=963.98  Aligned_cols=446  Identities=81%  Similarity=1.284  Sum_probs=422.7

Q ss_pred             CCchhhhhcccCCCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHH
Q 043456            1 MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKT   80 (447)
Q Consensus         1 MlDik~ir~~~~~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~   80 (447)
                      |||+++||.+||+|+|.|++++++|+.+.+.||+|+++|++||+++.++++|+++||++||+|+++++++++.+++++++
T Consensus         1 mlD~k~ir~~~~~~~~~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~   80 (448)
T PLN02678          1 MLDINLFREEKGGDPELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAET   80 (448)
T ss_pred             CCCHHHHhcccccCHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            99999999888899999999999999766668999999999999999999999999999999999888888889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCCCCceEEEeecCCCCCCCCCCHHHHHHHcCCcccccccc
Q 043456           81 NEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEPKLKNHVELVELLGIADLKKGAD  160 (447)
Q Consensus        81 ~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e~~~~~i~~~g~~~~~~~~~~H~~l~~~~~l~d~~~~~~  160 (447)
                      ++||++|+.++.++.++++++.++++.|||+|||+||+|.||++|++++.||.++...+++||++||+++|||||++|++
T Consensus        81 ~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~VP~G~de~~n~~vr~~g~~~~~~~~~dH~~Lg~~l~l~d~~~~~~  160 (448)
T PLN02678         81 KELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVPVSNDEANNAVVRTWGEKRQEPKLKNHVDLVELLGIVDTERGAD  160 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCcCCCEEEEEEcCCCCCCCCCCHHHHHhhccCccchhhhh
Confidence            99999999999999999999999999999999999999999999999999999876337899999999999999999999


Q ss_pred             ccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhH
Q 043456          161 IAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPL  240 (447)
Q Consensus       161 ~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l  240 (447)
                      ++|+++|||.|.||+|++||++|+++.+.+.||++|.+|+|++.++|++||||++|+++||++++.++++||+||||+++
T Consensus       161 vsG~~~y~l~g~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~~~~yLi~TaE~~l  240 (448)
T PLN02678        161 VAGGRGYYLKGAGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATSEQPL  240 (448)
T ss_pred             hcCceeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCCCCceeeeccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999976556899999999999


Q ss_pred             HHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcC
Q 043456          241 CAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLK  320 (447)
Q Consensus       241 ~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lg  320 (447)
                      |++|++++++|++||+||+++|+|||+|+|++|++++||+|||||+|||||+||.|++.+|+++|++|++.+++||+.||
T Consensus       241 ~~~h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~  320 (448)
T PLN02678        241 CAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLG  320 (448)
T ss_pred             ChHHhcccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999765699999999999999999999


Q ss_pred             CcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccchhHH
Q 043456          321 IPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERT  400 (447)
Q Consensus       321 l~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rl  400 (447)
                      ||||+|.+||||||++++++||||||||+++.|+||+|||||+||||||++|||++.++.++++.||||+|||||||+|+
T Consensus       321 lpyrvv~~~sgdlg~~a~~~yDiE~W~P~~~~y~EvsS~Snc~D~QaRRl~iryr~~~~~~~~~~~vHTLNgt~lA~~R~  400 (448)
T PLN02678        321 IPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERT  400 (448)
T ss_pred             CCeEEEeecccccCCchhhceeeEeeccccCCceEEeeecccccHhhhcccceecccccCCCCceeEEecCCchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999996532245789999999999999999


Q ss_pred             HHHHHHhcCCCCCcccCCcccCcCCCceeecCCCCCCccccccccC
Q 043456          401 ICCILENYQKEDGVEVPEVLQPFMGGKTFLPFKAKPAPEAKGKKSK  446 (447)
Q Consensus       401 l~allE~~q~~~gi~iP~~L~py~~g~~~i~~~~~~~~~~~~~~~~  446 (447)
                      |+|||||||++|||.||++|+|||||.++|+|+.||...-||+|.+
T Consensus       401 l~AiLEn~Q~~dgi~iP~vL~pym~g~~~i~~~~~~~~~~~~~~~~  446 (448)
T PLN02678        401 LCCILENYQTEDGVRVPEVLQPFMGGIEFLPFKKKPPAKGKGKKKK  446 (448)
T ss_pred             HHHHHHhCcCCCCeECChhhhhhcCCCceecCCCCccccccccccc
Confidence            9999999999999999999999999999999875554455666543

>PLN02320 seryl-tRNA synthetase Back     alignment and domain information
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14894 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02734 glycyl-tRNA synthetase Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>PRK07080 hypothetical protein; Validated Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00457 asnS asparaginyl-tRNA synthetase Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00425 asparagine-tRNA ligase; Provisional Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02221 asparaginyl-tRNA synthetase Back     alignment and domain information
>PRK02983 lysS lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02532 asparagine-tRNA synthetase Back     alignment and domain information
>PLN02603 asparaginyl-tRNA synthetase Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial Back     alignment and domain information
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea Back     alignment and domain information
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4 Back     alignment and domain information
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures Back     alignment and domain information
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09343 prefoldin subunit beta; Provisional Back     alignment and domain information
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4196 consensus bZIP transcription factor MafK [Transcription] Back     alignment and domain information
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
3qne_A485 Candida Albicans Seryl-Trna Synthetase Length = 485 1e-125
3qo5_A485 Crystal Structure Of The Seryl-Trna Synthetase From 1e-124
3vbb_A522 Crystal Structure Of Seryl-Trna Synthetase From Hum 1e-117
3lsq_A484 Trypanosoma Brucei Seryl-Trna Synthetase Length = 4 1e-113
2dq0_A455 Crystal Structure Of Seryl-Trna Synthetase From Pyr 4e-86
2dq3_A425 Crystal Structure Of Aq_298 Length = 425 2e-82
1sry_A421 Refined Crystal Structure Of The Seryl-Trna Synthet 5e-51
3err_A536 Microtubule Binding Domain From Mouse Cytoplasmic D 8e-50
1wle_A501 Crystal Structure Of Mammalian Mitochondrial Seryl- 2e-43
>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase Length = 485 Back     alignment and structure 
Iteration: 1

 Score =  443 bits (1139), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/442 (53%), Positives = 302/442 (68%), Gaps = 21/442 (4%)
Query: 1   MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKIN 60
           MLDIN F  EKGG PE I+ SQ++R  SV+LVDEII+  K+W +L+FD++ + K+LN + 
Sbjct: 1   MLDINAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQ 60
Query: 61  KQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWA--AVKAKLEVVGNLVHDSVPV 118
           K+I +   + +D  +++ +  ++  +   KE+  +EA A   +++K+  VGN+VH+SV  
Sbjct: 61  KEIGKRFKAKEDAKDLIAEKEKLSNEK--KEIIEKEAEADKNLRSKINQVGNIVHESVVD 118
Query: 119 SNDEANNAIVRTWG-EKRTEP-----------KLKNHVELVELLGIADLKKGADIAGGRG 166
           S DE NN +VRTW  E   +P           KL +H  L+ L G  D ++G  I G RG
Sbjct: 119 SQDEENNELVRTWTPENYKKPEQIAAATGAPAKLSHHEVLLRLDGY-DPERGVRIVGHRG 177
Query: 167 FYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE 226
           ++L+  GV LNQALIN+GL FL  K Y  L  P  M KEVMAK AQL+QFDEELYKV   
Sbjct: 178 YFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG 237
Query: 227 GDDKYLIATAEQPLCAYHIDDWIH-PSE-LPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQ 284
            D+KYLIAT+EQP+ AYH  +W   P+E LP+RYAGYSSCFR+EAGSHG+D  GIFRVH 
Sbjct: 238 EDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHA 297
Query: 285 FEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGXXXXXXXXXXXXX 344
           FEK+EQF +T P    SW+  + MI  SEEFYQ L +PY+VV IVSG             
Sbjct: 298 FEKIEQFVLTEPE--KSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYDLE 355
Query: 345 XWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCI 404
            WFP  Q Y+ELVSCSNCTDYQSR LEIR G K+ N+Q K+YVH LNSTL+ATERTICCI
Sbjct: 356 AWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTLSATERTICCI 415
Query: 405 LENYQKEDGVEVPEVLQPFMGG 426
           LENYQKEDG+ +PEVL+ ++ G
Sbjct: 416 LENYQKEDGLVIPEVLRKYIPG 437
>pdb|3QO5|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From Candida Albicans Length = 485 Back     alignment and structure
>pdb|3VBB|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Human At 2.9 Angstroms Length = 522 Back     alignment and structure
>pdb|3LSQ|A Chain A, Trypanosoma Brucei Seryl-Trna Synthetase Length = 484 Back     alignment and structure
>pdb|2DQ0|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus Horikoshii Complexed With A Seryl-Adenylate Analog Length = 455 Back     alignment and structure
>pdb|2DQ3|A Chain A, Crystal Structure Of Aq_298 Length = 425 Back     alignment and structure
>pdb|1SRY|A Chain A, Refined Crystal Structure Of The Seryl-Trna Synthetase From Thermus Thermophilus At 2.5 Angstroms Resolution Length = 421 Back     alignment and structure
>pdb|3ERR|A Chain A, Microtubule Binding Domain From Mouse Cytoplasmic Dynein As A Fusion With Seryl-Trna Synthetase Length = 536 Back     alignment and structure
>pdb|1WLE|A Chain A, Crystal Structure Of Mammalian Mitochondrial Seryl-Trna Synthetase Complexed With Seryl-Adenylate Length = 501 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 0.0
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 0.0
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 0.0
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 0.0
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 1e-166
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 1e-166
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 1e-152
3err_A536 Fusion protein of microtubule binding domain from 1e-152
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 8e-70
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 4e-64
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-04
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Length = 485 Back     alignment and structure
 Score =  721 bits (1864), Expect = 0.0
 Identities = 243/461 (52%), Positives = 316/461 (68%), Gaps = 17/461 (3%)

Query: 1   MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKIN 60
           MLDIN F  EKGG PE I+ SQ++R  SV+LVDEII+  K+W +L+FD++ + K+LN + 
Sbjct: 1   MLDINAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQ 60

Query: 61  KQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSN 120
           K+I +   + +D  +++ +  ++  +  +   +  EA   +++K+  VGN+VH+SV  S 
Sbjct: 61  KEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQ 120

Query: 121 DEANNAIVRTWGEKR-----------TEPKLKNHVELVELLGIADLKKGADIAGGRGFYL 169
           DE NN +VRTW  +              P   +H E++  L   D ++G  I G RG++L
Sbjct: 121 DEENNELVRTWTPENYKKPEQIAAATGAPAKLSHHEVLLRLDGYDPERGVRIVGHRGYFL 180

Query: 170 KGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDD 229
           +  GV LNQALIN+GL FL  K Y  L  P  M KEVMAK AQL+QFDEELYKV    D+
Sbjct: 181 RNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGEDE 240

Query: 230 KYLIATAEQPLCAYHIDDWIHP--SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEK 287
           KYLIAT+EQP+ AYH  +W      +LP+RYAGYSSCFR+EAGSHG+D  GIFRVH FEK
Sbjct: 241 KYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEK 300

Query: 288 VEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWF 347
           +EQF +T P    SW+  + MI  SEEFYQ L +PY+VV IVSG LN+AAAKK DLEAWF
Sbjct: 301 IEQFVLTEPE--KSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYDLEAWF 358

Query: 348 PASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILEN 407
           P  Q Y+ELVSCSNCTDYQSR LEIR G K+ N+Q K+YVH LNSTL+ATERTICCILEN
Sbjct: 359 PFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTLSATERTICCILEN 418

Query: 408 YQKEDGVEVPEVLQPFMGGKT-FLPFKAKPAPEAKGKKSKA 447
           YQKEDG+ +PEVL+ ++ G+  F+P+  K  P+      KA
Sbjct: 419 YQKEDGLVIPEVLRKYIPGEPEFIPY-IKELPKNTTSVKKA 458
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Length = 484 Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Length = 522 Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Length = 455 Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Length = 501 Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Length = 421 Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Length = 425 Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} Length = 536 Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Length = 346 Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Length = 522 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query447
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 100.0
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 100.0
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 100.0
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 100.0
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 100.0
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 100.0
3err_A536 Fusion protein of microtubule binding domain from 100.0
1nj1_A 501 PROR, proline-tRNA synthetase, proline--tRNA ligas 100.0
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 100.0
3ial_A 518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 100.0
4hvc_A 519 Bifunctional glutamate/proline--tRNA ligase; ligas 100.0
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 100.0
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 100.0
1nj8_A 459 Proline-tRNA synthetase, proline--tRNA ligase; cla 100.0
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 100.0
1hc7_A 477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 100.0
2j3l_A 572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 100.0
1ati_A505 Glycyl-tRNA synthetase; protein biosynthesis, liga 100.0
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 100.0
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 100.0
3a32_A 471 Probable threonyl-tRNA synthetase 1; aeropyrum per 100.0
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 100.0
2zt5_A 693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 99.97
1qe0_A 420 Histidyl-tRNA synthetase; class II tRNA synthetase 99.93
4e51_A 467 Histidine--tRNA ligase; seattle structural genomic 99.87
1h4v_B 421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 99.84
1htt_A 423 Histidyl-tRNA synthetase; complex (tRNA synthetase 99.82
1wu7_A 434 Histidyl-tRNA synthetase; ligase, structural genom 99.81
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 99.77
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 99.72
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 99.71
3od1_A 400 ATP phosphoribosyltransferase regulatory subunit; 99.68
3lc0_A 456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 99.64
3net_A 465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 99.56
4g84_A 464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 99.5
4g85_A 517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 99.49
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 99.3
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 99.21
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 98.79
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 98.21
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 98.16
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 98.12
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 98.11
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 98.09
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 98.06
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 97.99
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 97.98
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 97.91
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 97.84
2du3_A 534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 97.83
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 97.82
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 97.81
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 97.79
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 97.79
1c0a_A 585 Aspartyl tRNA synthetase; protein-RNA complex, lig 97.74
1l0w_A 580 Aspartyl-tRNA synthetase; space-grown crystal, dim 97.7
4ah6_A 617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 97.67
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 97.67
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 97.6
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 97.48
2du7_A 549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 97.18
2odr_B 648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 97.08
2odr_A 665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 97.06
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 97.05
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.99
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 96.17
3cmq_A415 Phenylalanyl-tRNA synthetase, mitochondrial; class 95.32
2rhq_B795 Phenylalanyl-tRNA synthetase beta chain; heterotet 94.33
1b7y_B785 Phers, protein (phenylalanyl-tRNA synthetase); enz 94.27
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 94.09
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 94.08
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 92.1
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 83.69
2zqm_A117 Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9 82.48
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 81.61
1fxk_A107 Prefoldin; archaeal protein, chaperone; 2.30A {Met 80.6
4dzn_A33 Coiled-coil peptide CC-PIL; de novo protein; HET: 80.4
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
Probab=100.00  E-value=2.4e-121  Score=949.66  Aligned_cols=437  Identities=55%  Similarity=0.917  Sum_probs=414.4

Q ss_pred             CCchhhhhcccCCCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHH
Q 043456            1 MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKT   80 (447)
Q Consensus         1 MlDik~ir~~~~~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~   80 (447)
                      ||||++||++||.|||.|++++++|+.+.++||+|++||++||+++.++++|+++||++||+|+++|+++++.++|++++
T Consensus         1 Mldi~~ir~~~~~n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~   80 (485)
T 3qne_A            1 MLDINAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEK   80 (485)
T ss_dssp             CCCGGGGCGGGTCCHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             CCChHHHhccCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            99999999888889999999999999887779999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCCCCceEEEeecCCC----------C-CCCCCCHHHHHHH
Q 043456           81 NEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKR----------T-EPKLKNHVELVEL  149 (447)
Q Consensus        81 ~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e~~~~~i~~~g~~~----------~-~~~~~~H~~l~~~  149 (447)
                      ++|+++|++|++++.++++++..+++.|||+|||+||+|.||++|++|++||+++          . +++++||++||++
T Consensus        81 ~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g~~e~~n~~v~~~g~~~~~~~~~~~~~~~~~~~~dH~elg~~  160 (485)
T 3qne_A           81 EKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQDEENNELVRTWTPENYKKPEQIAAATGAPAKLSHHEVLLR  160 (485)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSCGGGCEEEEEECCTTCCSSSSBCTTTCCBCCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCccCCEEEEEeCCCCccccccccccccCCCccCHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999987          2 6788999999999


Q ss_pred             cCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCc
Q 043456          150 LGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDD  229 (447)
Q Consensus       150 ~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~  229 (447)
                      +|||||+++++++|+|||||+|.|++|+++|++|+++.+.+.||++|++|.|++.++|++||||++|+++||++++.+++
T Consensus       161 l~l~df~~~~k~sGsg~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~~~~  240 (485)
T 3qne_A          161 LDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGEDE  240 (485)
T ss_dssp             TTCEEHHHHHHHHCTTCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEETTEE
T ss_pred             cCCcccccccccccceeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCCCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999875568


Q ss_pred             cccccCCChhHHHHhhccccC--CCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHH
Q 043456          230 KYLIATAEQPLCAYHIDDWIH--PSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEE  307 (447)
Q Consensus       230 ~~L~pTsE~~l~~l~~~~~~s--~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~  307 (447)
                      +||+||+|+|+++||++++++  |++||++|+++|+|||+|+|++|++++||+|+|||+|+|+|+||+|++  |+++|++
T Consensus       241 ~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~--s~~e~e~  318 (485)
T 3qne_A          241 KYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEK--SWEEFDR  318 (485)
T ss_dssp             EEECSSTHHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGGG--HHHHHHH
T ss_pred             EEEeccccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHH--HHHHHHH
Confidence            999999999999999999998  999999999999999999999999999999999999999999999988  9999999


Q ss_pred             HHHHHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEE
Q 043456          308 MIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYV  387 (447)
Q Consensus       308 ~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~  387 (447)
                      |++.+++||+.||||||+|.+|++|+|++++++||||+|+|++++|+||+|||||+||||+|++|+|+++.+.++++.||
T Consensus       319 ml~~~e~il~~LgLpyrvv~~~tgdlg~~a~~tyDiE~w~P~~~~~~Eiss~Snc~dyqArr~~iry~~~~~~~~~~~~v  398 (485)
T 3qne_A          319 MIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYV  398 (485)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHTTCEECC------CCCBC
T ss_pred             HHHHHHHHHHHCCCcEEEEEcCCcccCCchhhheeeeEeccCCCceeEEEEecCCcCccccccceEEecccccCCCceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999753224677899


Q ss_pred             EeecccccchhHHHHHHHHhcCCCCCcccCCcccCcCCCc-eeecCCCCCCccc
Q 043456          388 HLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGK-TFLPFKAKPAPEA  440 (447)
Q Consensus       388 htlngt~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~-~~i~~~~~~~~~~  440 (447)
                      ||+||||+|++|+|+|||||||++|||+||++|+|||+|. .+||+. |++|..
T Consensus       399 htlNgt~lav~R~l~AiLEn~q~~dGi~iP~~L~py~~g~~~~i~~~-~~~~~~  451 (485)
T 3qne_A          399 HCLNSTLSATERTICCILENYQKEDGLVIPEVLRKYIPGEPEFIPYI-KELPKN  451 (485)
T ss_dssp             EEEEEEEEEHHHHHHHHHHHSEETTEEECCHHHHTTSTTCCSEEECC-CCCSSC
T ss_pred             EEEecchhHHHHHHHHHHHhcCCCCceecChhhcCccCCcceEeecc-ccCCcc
Confidence            9999999999999999999999999999999999999999 999998 888864
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B Back     alignment and structure
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 447
d1seta2311 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS 8e-84
d1nyra4291 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (Th 1e-31
d1nj1a3265 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS 2e-26
d1nj8a3268 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) 2e-24
d1g5ha2290 d.104.1.1 (A:41-330) The aaRS-like accessory subun 5e-24
d1seta1110 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {T 3e-22
d1hc7a2272 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) 8e-22
d1qf6a4291 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (Th 4e-20
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Length = 311 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

 Score =  258 bits (659), Expect = 8e-84
 Identities = 103/313 (32%), Positives = 172/313 (54%), Gaps = 8/313 (2%)

Query: 121 DEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQA 179
            E  N  ++  G          +HV L+E  G  +  + + ++G R + LKGD      A
Sbjct: 3   GEEANREIKRVGGPPEFSFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELA 61

Query: 180 LINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQP 239
           L+ F +DF+ ++ +  +  P + R++          + ++++ +     D YL  TAE  
Sbjct: 62  LLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE--TDLYLTGTAEVV 119

Query: 240 LCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGN 299
           L A H  + +    LP+RYAGY+  FR EAGS G+D  G+ RVHQF KVEQ+ +T  +  
Sbjct: 120 LNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLE 179

Query: 300 DSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSC 359
            S    +E+++N+EE  ++L++PY++V + +G +     +++D+E + P+   YRE  SC
Sbjct: 180 ASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSC 239

Query: 360 SNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDG-VEVPE 418
           S   D+Q+RR  +RY   +  E   +Y + LN+T  AT R +  +LEN+Q +DG V VP+
Sbjct: 240 SALLDWQARRANLRY---RDPEGRVRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQ 296

Query: 419 VLQPFMGGKTFLP 431
            L P+MG +   P
Sbjct: 297 ALIPYMGKEVLEP 309
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Length = 291 Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 265 Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 268 Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 290 Back     information, alignment and structure
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Length = 110 Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Length = 272 Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Length = 291 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query447
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 100.0
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 100.0
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 100.0
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 100.0
d1nj1a3265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 100.0
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 100.0
d1g5ha2290 The aaRS-like accessory subunit of mitochondrial p 99.98
d1b76a2331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.97
d1seta1110 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 99.92
d1atia2394 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.88
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 99.06
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 98.79
d1wu7a2327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 98.78
d1h4vb2324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 98.68
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 98.54
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 97.99
d1eova2353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 97.95
d1b8aa2335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 97.84
d1e1oa2342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 97.76
d1usya_275 ATP phosphoribosyltransferase regulatory subunit H 97.71
d1c0aa3346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 97.6
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 97.58
d1n9wa2304 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 97.45
d1l0wa3356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 97.42
d1jjcb5207 Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, 90.88
d1fxka_107 Prefoldin beta subunit {Archaeon Methanobacterium 87.87
d2f23a175 GreA transcript cleavage protein, N-terminal domai 81.87
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=100.00  E-value=1.5e-90  Score=685.63  Aligned_cols=308  Identities=34%  Similarity=0.604  Sum_probs=292.4

Q ss_pred             CCCCCCCceEEEeecCCCC-CCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEe
Q 043456          118 VSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLL  196 (447)
Q Consensus       118 ~g~~e~~~~~i~~~g~~~~-~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v  196 (447)
                      ||++| +|++|++||+++. +|+++||++||+++||+|+ +++|+||+|||||+|.||+|++||++|++|.+.+.||++|
T Consensus         1 vG~e~-~n~~i~~~G~~~~~~f~~k~H~el~~~l~l~d~-~~~k~sG~rfy~l~g~~a~Le~AL~~~~ld~~~~~gy~~v   78 (311)
T d1seta2           1 VGGEE-ANREIKRVGGPPEFSFPPLDHVALMEKNGWWEP-RISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPM   78 (311)
T ss_dssp             SSSGG-GCEEEEEESCCCCCSSCCCCHHHHHHHHTCBCT-THHHHHCSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCcc-CCEEEEEECCCCCCCCCCCCHHHHHHHcCCcch-hhceeecCceEEEECHHHHHHHHHHHHHHHhhhcccceEE
Confidence            57754 6999999999988 8999999999999999994 7899999999999999999999999999999999999999


Q ss_pred             cCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCC
Q 043456          197 HTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDT  276 (447)
Q Consensus       197 ~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~  276 (447)
                      ++|+|++.+++++|||+|+|.+++|.+.+  +++||+||||+++++||+++++++++||+||+++|+|||+|+|++|+++
T Consensus        79 ~~P~lv~~~~~~~~G~~p~f~~~~y~~~~--~~~~LipTsE~~l~~~~~~~i~~~~~LPlr~~~~s~cfR~Eag~~g~~t  156 (311)
T d1seta2          79 TLPSYAREKAFLGTGHFPAYRDQVWAIAE--TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDV  156 (311)
T ss_dssp             ECCSEEEHHHHHHHTCTTTTGGGSCBBTT--SSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCTTSSC
T ss_pred             eechhhccchhhhcccccccccccccccc--cceeecccccchhhhhhhhhhhhhhhccceEEeecccchhhhccccccc
Confidence            99999999999999999999999999865  4799999999999999999999999999999999999999999999999


Q ss_pred             cCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeE
Q 043456          277 LGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYREL  356 (447)
Q Consensus       277 ~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev  356 (447)
                      +||+|||||+|+|||++|.+..++|.+++++++++++.+++.||||||+|.+|++|+|++++++||||+|||++++|+||
T Consensus       157 rGL~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~~~~~~~L~lpyrvv~~~~~dl~~~a~~~~diE~w~P~~~~y~Ev  236 (311)
T d1seta2         157 RGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRET  236 (311)
T ss_dssp             STTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCTTTSCTTCSEEEEEEEEEGGGTEEEEE
T ss_pred             hhhhhhcccchhhhheeeccccccchhHHHHHHHHHHHHHHhhCCcchhccccCCCCchHHHhhhHHHHhHhhcCCcccc
Confidence            99999999999999999976544599999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecccchhhhhhcccEEeccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCC-cccCCcccCcCCCceeecCC
Q 043456          357 VSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDG-VEVPEVLQPFMGGKTFLPFK  433 (447)
Q Consensus       357 ~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~g-i~iP~~L~py~~g~~~i~~~  433 (447)
                      +|||||+|||||||+|+|+++   +++..|+||+|||++|++|+|+|||||||++|| |.||++|+|||| .++|.|+
T Consensus       237 ~S~sn~~d~qsrRl~i~y~~~---dg~~~~~htlngT~~ai~R~l~allEn~q~~dG~v~iP~~L~py~~-~~~i~p~  310 (311)
T d1seta2         237 HSCSALLDWQARRANLRYRDP---EGRVRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYMG-KEVLEPC  310 (311)
T ss_dssp             EEEEECTTHHHHHHTCEEECT---TSCEEECEEEEEEEEEETHHHHHHHHHHBCTTSCEECCGGGHHHHS-SSEECCC
T ss_pred             cCceecchHHHhhcccEEECC---CCCEEeEEEecCchhHHHHHHHHHHHhccCCCCcEeCChhhhhhcC-CceeeeC
Confidence            999999999999999999975   567899999999999999999999999999999 789999999995 5666553
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure