Citrus Sinensis ID: 043785

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILCNLRLD
Secondary Structure (PSIPRED)
cHHHHHHHHHHccccEEcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHHHHccHHHHcHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MLQLFFTVAfsavpltlyipplrslNLFVETMEDFLRESRiytnrlyprarfVWSRVLDCILCNLRLD
Flexible Loop (DISEMBL)
MLQLFFTVAfsavpltlyipplrSLNLFVETMEDFLRESriytnrlyprarfvwsrVLDCILCNLRLD
Low Complexity Region (SEG)
MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILCNLRLD
Disordered region (IsUnstruct)
**QLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILCNLR**
Disordered Region (DISOPRED)
*LQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILCNLRL*
Disordered Region (DISEMBL)
MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILCNLRLD
Disordered Region (DISPRO)
MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILCNLRLD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILCNLRLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
118483978	69	unknown [Populus trichocarpa]	1.0	0.985	0.867	4e-26
224106071	68	predicted protein [Populus trichocarpa]	1.0	1.0	0.867	5e-26
224055221	68	predicted protein [Populus trichocarpa]	1.0	1.0	0.808	1e-23
357514837	78	hypothetical protein MTR_8g036790 [Medic	0.941	0.820	0.765	2e-21
388511919	67	unknown [Medicago truncatula]	0.941	0.955	0.765	2e-21
225450143	67	PREDICTED: uncharacterized protein LOC10	0.941	0.955	0.75	2e-20
4678939	763	putative protein [Arabidopsis thaliana]	0.970	0.086	0.651	7e-20
297816484	71	hypothetical protein ARALYDRAFT_906571 [	0.970	0.929	0.651	9e-18
42572639	70	uncharacterized protein [Arabidopsis tha	0.970	0.942	0.651	2e-17
224139858	66	predicted protein [Populus trichocarpa]	0.823	0.848	0.767	3e-16

>gi|118483978|gb|ABK93876.1| unknown [Populus trichocarpa]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/68 (86%), Positives = 62/68 (91%)

Query: 1  MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
          MLQL FTVAFSAVPLTLYIPP+RSLNLFVETMED LRESR+YT RLYPRAR VWSRVLD 
Sbjct: 2  MLQLLFTVAFSAVPLTLYIPPVRSLNLFVETMEDLLRESRVYTGRLYPRARHVWSRVLDI 61

Query: 61 ILCNLRLD 68
          +LCN RLD
Sbjct: 62 LLCNFRLD 69

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106071|ref|XP_002314033.1| predicted protein [Populus trichocarpa] gi|222850441|gb|EEE87988.1| predicted protein [Populus trichocarpa]

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 59/68 (86%), Positives = 62/68 (91%)

Query: 1  MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
          MLQL FTVAFSAVPLTLYIPP+RSLNLFVETMED LRESR+YT RLYPRAR VWSRVLD 
Sbjct: 1  MLQLLFTVAFSAVPLTLYIPPVRSLNLFVETMEDLLRESRVYTGRLYPRARHVWSRVLDI 60

Query: 61 ILCNLRLD 68
          +LCN RLD
Sbjct: 61 LLCNFRLD 68

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055221|ref|XP_002298436.1| predicted protein [Populus trichocarpa] gi|222845694|gb|EEE83241.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/68 (80%), Positives = 58/68 (85%)

Query: 1  MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
          MLQLFFTVAFSAVPLTLYIPP+RSLNLFVETME  LRES +YT RLYPRAR  WSR LD 
Sbjct: 1  MLQLFFTVAFSAVPLTLYIPPMRSLNLFVETMEGLLRESSVYTTRLYPRARHAWSRFLDI 60

Query: 61 ILCNLRLD 68
          +LCN RL 
Sbjct: 61 LLCNFRLG 68

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514837|ref|XP_003627707.1| hypothetical protein MTR_8g036790 [Medicago truncatula] gi|355521729|gb|AET02183.1| hypothetical protein MTR_8g036790 [Medicago truncatula]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/64 (76%), Positives = 56/64 (87%)

Query: 1  MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
          MLQLFFTVAFS VPLTLYIPP+RSLNLFVETME  +RES  Y+NR+YPR R  WSR+L+C
Sbjct: 1  MLQLFFTVAFSVVPLTLYIPPIRSLNLFVETMESVMRESTTYSNRIYPRLRIAWSRMLNC 60

Query: 61 ILCN 64
          +LCN
Sbjct: 61 LLCN 64

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511919|gb|AFK44021.1| unknown [Medicago truncatula]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/64 (76%), Positives = 56/64 (87%)

Query: 1  MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
          MLQLFFTVAFS VPLTLYIPP+RSLNLFVETME  +RES  Y+NR+YPR R  WSR+L+C
Sbjct: 1  MLQLFFTVAFSVVPLTLYIPPIRSLNLFVETMESVMRESTTYSNRIYPRLRIAWSRMLNC 60

Query: 61 ILCN 64
          +LCN
Sbjct: 61 LLCN 64

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450143|ref|XP_002279582.1| PREDICTED: uncharacterized protein LOC100263680 isoform 1 [Vitis vinifera]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 57/64 (89%)

Query: 1  MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
          MLQLFF VAFS+VPLTLYIPPLRSLNLFVETMED +RE+ ++T+RLYPR R  + R+LDC
Sbjct: 1  MLQLFFAVAFSSVPLTLYIPPLRSLNLFVETMEDIVRETSMHTDRLYPRVRQAFFRILDC 60

Query: 61 ILCN 64
          +LCN
Sbjct: 61 MLCN 64

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4678939|emb|CAB41330.1| putative protein [Arabidopsis thaliana]

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/66 (65%), Positives = 52/66 (78%)

Query: 1   MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
           MLQLFFT+AFSA PLTLYIPP+R L +FVETME+   E R+Y+ RL+PRAR  WSR+LDC
Sbjct: 694 MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRARIAWSRLLDC 753

Query: 61  ILCNLR 66
              + R
Sbjct: 754 FFSSSR 759

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816484|ref|XP_002876125.1| hypothetical protein ARALYDRAFT_906571 [Arabidopsis lyrata subsp. lyrata] gi|297321963|gb|EFH52384.1| hypothetical protein ARALYDRAFT_906571 [Arabidopsis lyrata subsp. lyrata]

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 52/66 (78%)

Query: 1  MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
          MLQLFFT+AFSA PLTLYIPP+R L +FVETME+   E R+Y+ RL+PRAR  WSR+LDC
Sbjct: 1  MLQLFFTIAFSAAPLTLYIPPVRCLTVFVETMEEMGMEGRVYSRRLFPRARIAWSRLLDC 60

Query: 61 ILCNLR 66
             + R
Sbjct: 61 FFSSSR 66

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572639|ref|NP_974415.1| uncharacterized protein [Arabidopsis thaliana] gi|22135852|gb|AAM91508.1| putative protein [Arabidopsis thaliana] gi|23197630|gb|AAN15342.1| putative protein [Arabidopsis thaliana] gi|332645371|gb|AEE78892.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 52/66 (78%)

Query: 1  MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
          MLQLFFT+AFSA PLTLYIPP+R L +FVETME+   E R+Y+ RL+PRAR  WSR+LDC
Sbjct: 1  MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRARIAWSRLLDC 60

Query: 61 ILCNLR 66
             + R
Sbjct: 61 FFSSSR 66

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139858|ref|XP_002323311.1| predicted protein [Populus trichocarpa] gi|222867941|gb|EEF05072.1| predicted protein [Populus trichocarpa]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/56 (76%), Positives = 49/56 (87%)

Query: 1  MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSR 56
          MLQLFF VAFSAVPLTLY+PP+RSLNLFVETMED LR++ +YT R YPR R V+SR
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETMEDVLRQTSLYTVRAYPRIRLVFSR 56

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
TAIR|locus:1006230209	70	AT3G52105 "AT3G52105" [Arabido	0.970	0.942	0.651	1.9e-19

TAIR|locus:1006230209 AT3G52105 "AT3G52105" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 43/66 (65%), Positives = 52/66 (78%)

Query:     1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60
             MLQLFFT+AFSA PLTLYIPP+R L +FVETME+   E R+Y+ RL+PRAR  WSR+LDC
Sbjct:     1 MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRARIAWSRLLDC 60

Query:    61 ILCNLR 66
                + R
Sbjct:    61 FFSSSR 66


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.336   0.146   0.461    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       68        68   0.00091  102 3  11 21  0.46    27
                                                     29  0.38    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  453 (48 KB)
  Total size of DFA:  86 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.40u 0.10s 8.50t   Elapsed:  00:00:01
  Total cpu time:  8.40u 0.10s 8.50t   Elapsed:  00:00:01
  Start:  Tue May 21 00:36:45 2013   End:  Tue May 21 00:36:46 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00091029 SubName- Full=Putative uncharacterized protein; (68 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
KOG4443	694	consensus Putative transcription factor HALR/MLL3,	97.14

>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]

Probab=97.14  E-value=6.2e-05  Score=63.23  Aligned_cols=62  Identities=13%  Similarity=-0.239  Sum_probs=58.8

Q ss_pred             ChhHHHHHhhhcccceeccCCchhHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHH
Q 043785            1 MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDCILC   63 (68)
Q Consensus         1 MLQl~favaFSA~PLTLYvPPiRsL~lfvet~e~~~re~~~Ys~r~ypr~R~a~sRil~~~~~   63 (68)
                      |||.++.-.++|.+.+.||+|+++.+.+++|++++ -|-..|.-+..+|+|++||+-++++..
T Consensus       626 ~~q~~kw~~~~~~g~~ati~~~~~~~~~~~t~~e~-p~~~~~~iql~~~~~~~~s~~~~pf~q  687 (694)
T KOG4443|consen  626 PLQSAQWTNNHLEGGVATIKIPFKPGEPQKTKLEM-PQLDEKQIQLQARIPISTSLPLTPFGQ  687 (694)
T ss_pred             chhhhhhhhhccCCCcceeccccCCCcchhhcccc-cchhHHHHHHhhhhhhhcccccCcccc
Confidence            68999999999999999999999999999999999 999999999999999999998877654

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00