Citrus Sinensis ID: 043990

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-
MEDDEEILSDSDPSDSSDGYTIDREDADYNDDNDDGDDEASAADSAPSDEDRKSKNVDALVRGNLVVKRQSLLPRVLSVTEGAAVCRKPFKPPCSNGYDNGNDQLARRLCARKRFVPWGSSRPVLVTITNRLDLPRTVENNVIEENFTLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFTNQVDGKLVPIESKVSPKMQATEGNKNPNNHITNPKPKLDQRSKLLSQHHKLLKDVPSLENSAKFSLSASSQPKSMRTSLKGAIKPKLSFGNQLPLKRFSPDNVEHDDDFE
cccHHHccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHcccccHHccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEccccHHHHHHHHHHHccccEEEEEEccccHHHHHHcccccccccccccEEEEEHHHHHHcHHcccccccccEEEEcccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHcHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHcccccccEEEEEcccccccccccccccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHcccHHHHHHcccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccHHHHHcccccccccccccHHHHHHHcccccEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccHHcccccccccccccccccccHcccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccEEccHHHHHcccHHHHHHHHHHHHHHccccccccccccEEEcccccHHHHHHHHHHHHHHHcccccccccccEEEEEcHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHccccccEEEEEHHHHHHcHHHHHccccEEEEEEEccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHHHcHHHHHHHcccccccHHHHHHHHHHHHcccHHHHccHHHcccccccccccHHHccccccccccccccccccccHHHHccHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHcccccccEEEEEEcccccccEEEccccEEEEEcccccHHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHHHcHcHHEEEccccccccccccccHHHHHHHHHccccccccccccccccccccccccHHHHHHcccccHHHHccccccccccHHHccHHHHHHHHccccccccccccHHHHHHccccccccccccHHHHHHHHccccEEEEcccccccccHHHHcccHHHHHHHccccccccccccccccccHHHHcccccccccccccccccccEccccccccccccccHHccccccccccccccccccccccccccccc
meddeeilsdsdpsdssdgytidredadynddnddgddeasaadsapsdedrksknvdaLVRGNLVVkrqsllprvlsvtegaavcrkpfkppcsngydngnDQLARRLCARkrfvpwgssrpvLVTITnrldlprtvennvieenftlppgvdplvlwqpeepqndggnlvpitvdpllvrflrphqreGVQFMFECVSGLLnaagihgciladdmglgKTLQSIALLYTLLCqgfdgkpmvKKAIIVtptslvsnWEAEIKKWVGGRVQLIALCEStrddvvsgidsftdpcsSLQVLIVSYETFrmhsskfscsescdllICDEAhrlkndqtltnrNDLEEFFAMvnftnpgilgdaAYFRRYYETSiicgreptateeEKKLGIERSSELSAKVNQFILRRTNAllsnhlppkIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCnhpkliydtiksgnpgttgfedcirffppemfsgrsgswtggdgawvELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRerrypylrldgttsiSKRQKLVnhfndpskNEFVFLLSskaggcglnliggnrlvlfdpdwnpandkQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEqtdssatqgnflstedLRDLFTFHDDVRSEihenmhctrcqnyddgaesigegdetnsankndqsdqevtDIGGFAGLAGCLHKLKssekqlgtpleedlnnwghhfysmsvpdailqasagdevtfvftnqvdgklvpieskvspkmqategnknpnnhitnpkpkldQRSKLLSQHHKLLkdvpslensakfslsassqpksMRTSlkgaikpklsfgnqlplkrfspdnvehdddfe
meddeeilsdsdpsdssdgytiDREDADYNDDNDDGDDEasaadsapsdedrksknvdalvrgnlvvkrqsllprvlsvtegaavcrkpfkppcsngydnGNDQLARRLCARKrfvpwgssrpvlvtitnrldlprtVENNVIEENFTLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIvtptslvsnWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIicgreptatEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAaarvwrdgqkkRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFTNQVDGKLVPIESKVSpkmqategnknpnnhitnpkPKLDQRSKLLSQHHKLLKdvpslensakfslsassqpksmrTSLKgaikpklsfgnqlplkrfspdnvehdddfe
MeddeeilsdsdpsdssdGYTIdredadynddnddgddeasaadsapsdedRKSKNVDALVRGNLVVKRQSLLPRVLSVTEGAAVCRKPFKPPCSNGYDNGNDQLARRLCARKRFVPWGSSRPVLVTITNRLDLPRTVENNVIEENFTLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFTNQVDGKLVPIESKVSPKMQATEGNKNPNNHITNPKPKLDQRskllsqhhkllkDVPSLENSAKFSLSASSQPKSMRTSLKGAIKPKLSFGNQLPLKRFSPDNVEHDDDFE
**********************************************************ALVRGNLVVKRQSLLPRVLSVTEGAAVCRKPFKPPCSNGYDNGNDQLARRLCARKRFVPWGSSRPVLVTITNRLDLPRTVENNVIEENFTLPPGVDPLVLWQPE****DGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGR*********************KVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVY******************************EDLRDLFTFHDDVRSEIHENMHCTRCQN****************************DIGGFAGLAGCLHKLK*********LEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFTNQVDGKLVP*****************************************************************************************************
***********************************************************************************************************************************************************************GGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIA****************TDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREP**T*EEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHS*****************AYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQ*****************DLRDLFTFHDDVRSEIHENMHC*****************************************************************WGHHFYSMSVPDAILQASAGDEVTFVFTNQVD**********************************************************************************************************
*****************DGYTIDREDADYNDD***********************NVDALVRGNLVVKRQSLLPRVLSVTEGAAVCRKPFKPPCSNGYDNGNDQLARRLCARKRFVPWGSSRPVLVTITNRLDLPRTVENNVIEENFTLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVY***********************QGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFTNQVDGKLVPIESKVSPKMQATEGNKNPNNHITNPKPKLDQRSKLLSQHHKLLKDVPSLE*******************LKGAIKPKLSFGNQLPLKRFSPDNVEHDDDFE
**************************************************************G**VVKRQSLLPRVLS**EGAAVCRKPFKPPCS*******DQLARRLCARKRFVPWGSSRPVLVTIT*************************PLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQ**********LSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFTNQVDGKLVPIESKVSPKMQ*******************************************************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEDDEEILSDSDPSDSSDGYTIDREDADYNDDNDDGDDEASAADSAPSDEDRKSKNVDALVRGNLVVKRQSLLPRVLSVTEGAAVCRKPFKPPCSNGYDNGNDQLARRLCARKRFVPWGSSRPVLVTITNRLDLPRTVENNVIEENFTLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNRNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFTNQVDGKLVPIESKVSPKMQATEGNKNPNNHITNPKPKLDQRSKLLSQHHKLLKDVPSLENSAKFSLSASSQPKSMRTSLKGAIKPKLSFGNQLPLKRFSPDNVEHDDDFE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query911 2.2.26 [Sep-21-2011]
A4PBL4980 DNA repair and recombinat yes no 0.833 0.774 0.737 0.0
B4KHL5783 DNA repair and recombinat N/A no 0.641 0.745 0.441 1e-147
Q92698747 DNA repair and recombinat yes no 0.594 0.725 0.475 1e-146
P70270747 DNA repair and recombinat yes no 0.572 0.698 0.480 1e-145
B4NXB8784 DNA repair and recombinat N/A no 0.596 0.692 0.454 1e-145
B4M9A8786 DNA repair and recombinat N/A no 0.609 0.706 0.447 1e-145
B3NAN8784 DNA repair and recombinat N/A no 0.596 0.692 0.449 1e-144
O76460784 DNA repair and recombinat yes no 0.596 0.692 0.447 1e-144
B3MMA5791 DNA repair and recombinat N/A no 0.596 0.686 0.456 1e-144
B4MX21784 DNA repair and recombinat N/A no 0.609 0.707 0.436 1e-143
>sp|A4PBL4|RAD54_ORYSJ DNA repair and recombination protein RAD54 OS=Oryza sativa subsp. japonica GN=RAD54 PE=1 SV=1 Back     alignment and function desciption
 Score = 1209 bits (3128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/791 (73%), Positives = 655/791 (82%), Gaps = 32/791 (4%)

Query: 48  SDEDRKSKNVDALVRGNLVVKRQSLLPRVLSVTEGAAVCRKPFKPPCSNGYDNGNDQLAR 107
           +D +RKS+NVDALVRGNLVV+RQ L+PR+LSV++ AA+ RKPFKPPC NGY   N+QLAR
Sbjct: 100 NDRERKSQNVDALVRGNLVVRRQPLIPRILSVSDAAAIARKPFKPPCQNGYSENNEQLAR 159

Query: 108 RLCARKRFVPWGSSRPVLVTITNRL-DLPRTVENNVIEENFTLPPGVDPLVLWQPEEPQN 166
           RL ARKRFVPWGS +P    +TN L   P    ++ +E   +LPPG++PL+LWQPE    
Sbjct: 160 RLSARKRFVPWGSVQPF--AVTNILPQSPAVSSDDSVENEESLPPGIEPLILWQPEGRDK 217

Query: 167 DGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSI 226
           +  N   I VD LLVR+LRPHQREGVQFMF+CVSGLLN  GI GCILADDMGLGKTLQSI
Sbjct: 218 ENSNFSAIKVDHLLVRYLRPHQREGVQFMFDCVSGLLNDDGISGCILADDMGLGKTLQSI 277

Query: 227 ALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSG 286
            LLYTLLCQGFD KPMVK+A++VTPTSLVSNWE+EI KW+ GRVQL+ALCESTR DV+SG
Sbjct: 278 TLLYTLLCQGFDAKPMVKRAVVVTPTSLVSNWESEIIKWLKGRVQLLALCESTRADVLSG 337

Query: 287 IDSFTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR------ 340
           I+SF  P S LQVLIVSYETFRMHSSKF    SCDLLICDEAHRLKNDQTLTN+      
Sbjct: 338 IESFLKPLSRLQVLIVSYETFRMHSSKFERPGSCDLLICDEAHRLKNDQTLTNKALAALP 397

Query: 341 -------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKL 387
                        NDLEEFF+MVNFTNPG+LGDA YFRRYYE  IICGREPTA+ EEK L
Sbjct: 398 CKRRILLSGTPMQNDLEEFFSMVNFTNPGVLGDATYFRRYYEAPIICGREPTASAEEKNL 457

Query: 388 GIERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRA 447
           G ERS+ELSAKVN FILRRTNALLSNHLPPKI+EVVCCKLT LQ+ LYNHFIHSKNVKR 
Sbjct: 458 GSERSAELSAKVNLFILRRTNALLSNHLPPKIVEVVCCKLTALQTALYNHFIHSKNVKRL 517

Query: 448 ISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSW 507
           ISE TKQSK+LAYITALKKLCNHPKLIYDTIKS N G +GF+DC+RFFPPE+FSGRSGSW
Sbjct: 518 ISEGTKQSKVLAYITALKKLCNHPKLIYDTIKSNNSGGSGFDDCLRFFPPELFSGRSGSW 577

Query: 508 TGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLD 567
           TGG G WVELSGKMHVLARLLGHLR +TDDRIVLVSNYTQTLDLFAQLCRERRYPY+RLD
Sbjct: 578 TGGGGMWVELSGKMHVLARLLGHLRLKTDDRIVLVSNYTQTLDLFAQLCRERRYPYIRLD 637

Query: 568 GTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAA 627
           G TSI+KRQKLVN FNDPS++EFVFLLSSKAGGCGLNL+GGNRL+LFDPDWNPANDKQAA
Sbjct: 638 GATSINKRQKLVNQFNDPSRDEFVFLLSSKAGGCGLNLVGGNRLILFDPDWNPANDKQAA 697

Query: 628 ARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTED 687
           ARVWRDGQKKRV+IYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQ D    QG+ LSTED
Sbjct: 698 ARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQADGK-MQGSSLSTED 756

Query: 688 LRDLFTFHDDVRSEIHENMHCTRCQNYD-----DGAESIGEGDETNSANKNDQSDQEVTD 742
           LRDLFTFH+ +RSEIHEN+ C RC N D     DG++      E  ++N  + S     D
Sbjct: 757 LRDLFTFHEQIRSEIHENLKCNRC-NKDGCMVLDGSKFDSAATEHEASNSGENS---YID 812

Query: 743 IGGFAGLAGCLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFTN 802
           IGGF  ++GC+ K+ SS +Q+G+P EEDL +WGHH    +VPD ILQ S+GDEV+FVFTN
Sbjct: 813 IGGFGAISGCVQKMNSSNQQIGSPSEEDLGSWGHHSDPSTVPDTILQCSSGDEVSFVFTN 872

Query: 803 QVDGKLVPIES 813
           Q+DGKLVP+ES
Sbjct: 873 QIDGKLVPVES 883
Involved in DNA repair and mitotic recombination.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -
>sp|B4KHL5|RAD54_DROMO DNA repair and recombination protein RAD54-like OS=Drosophila mojavensis GN=okr PE=3 SV=1 Back     alignment and function description
>sp|Q92698|RAD54_HUMAN DNA repair and recombination protein RAD54-like OS=Homo sapiens GN=RAD54L PE=1 SV=2 Back     alignment and function description
>sp|P70270|RAD54_MOUSE DNA repair and recombination protein RAD54-like OS=Mus musculus GN=Rad54l PE=1 SV=2 Back     alignment and function description
>sp|B4NXB8|RAD54_DROYA DNA repair and recombination protein RAD54-like OS=Drosophila yakuba GN=okr PE=3 SV=2 Back     alignment and function description
>sp|B4M9A8|RAD54_DROVI DNA repair and recombination protein RAD54-like OS=Drosophila virilis GN=okr PE=3 SV=1 Back     alignment and function description
>sp|B3NAN8|RAD54_DROER DNA repair and recombination protein RAD54-like OS=Drosophila erecta GN=okr PE=3 SV=1 Back     alignment and function description
>sp|O76460|RAD54_DROME DNA repair and recombination protein RAD54-like OS=Drosophila melanogaster GN=okr PE=1 SV=1 Back     alignment and function description
>sp|B3MMA5|RAD54_DROAN DNA repair and recombination protein RAD54-like OS=Drosophila ananassae GN=okr PE=3 SV=1 Back     alignment and function description
>sp|B4MX21|RAD54_DROWI DNA repair and recombination protein RAD54-like OS=Drosophila willistoni GN=okr PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query911
255555479940 DNA repair and recombination protein RAD 0.972 0.942 0.762 0.0
359475198934 PREDICTED: DNA repair and recombination 0.950 0.927 0.772 0.0
449445882928 PREDICTED: DNA repair and recombination 0.986 0.968 0.744 0.0
147834946985 hypothetical protein VITISV_021223 [Viti 0.855 0.790 0.758 0.0
145338703910 Rad54-like protein [Arabidopsis thaliana 0.917 0.918 0.748 0.0
297834836910 hypothetical protein ARALYDRAFT_479436 [ 0.971 0.972 0.706 0.0
356495839894 PREDICTED: DNA repair and recombination 0.917 0.935 0.705 0.0
9294624959 DNA repair protein RAD54-like [Arabidops 0.971 0.922 0.675 0.0
334185464908 Rad54-like protein [Arabidopsis thaliana 0.969 0.972 0.702 0.0
403399531980 RecName: Full=DNA repair and recombinati 0.833 0.774 0.737 0.0
>gi|255555479|ref|XP_002518776.1| DNA repair and recombination protein RAD54B, putative [Ricinus communis] gi|223542157|gb|EEF43701.1| DNA repair and recombination protein RAD54B, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1414 bits (3661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 709/930 (76%), Positives = 781/930 (83%), Gaps = 44/930 (4%)

Query: 13  PSDSSDGYTIDREDADYNDDNDDGDDEASAADSAPSDEDRKSKNVDALVRGNLVVKRQSL 72
           PSDSS+ Y +D E+ D +D +         A  +PSDE+ KSKNVDALVRGNLVVKRQSL
Sbjct: 24  PSDSSEDYALDEEEGDDDDVD------VVQAAQSPSDEELKSKNVDALVRGNLVVKRQSL 77

Query: 73  LPRVLSVTEGAAVCRKPFKPPCSNGYDNGNDQLARRLCARKRFVPWGSSRPVLVTITNRL 132
           LPRVLSVTEGAA+CRKPFKPP SNGY +GN QL+RRL ARKRFVPWGSSRPVL+ ITNR+
Sbjct: 78  LPRVLSVTEGAAICRKPFKPPSSNGYKDGNQQLSRRLLARKRFVPWGSSRPVLLPITNRI 137

Query: 133 DLPRTVENNVI-EENFTLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFLRPHQREG 191
           ++    E +V+ E+  TLPPG+DPLVLWQP+E  +  GN +PI VD LLV+FLRPHQREG
Sbjct: 138 NVSSPFEKDVVVEDTVTLPPGIDPLVLWQPDECDSTAGNFIPIIVDSLLVQFLRPHQREG 197

Query: 192 VQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTP 251
           VQFMF+CVSGL +AA I+GCILADDMGLGKTLQSI LLYTLL QGFD KPMV+KAIIVTP
Sbjct: 198 VQFMFDCVSGLHSAANINGCILADDMGLGKTLQSITLLYTLLGQGFDDKPMVRKAIIVTP 257

Query: 252 TSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSLQVLIVSYETFRMHS 311
           TSLVSNWEAEIKKWVG  V+LIALCE+TRDDVVSGIDSF +P S+LQVLIVSYETFRMHS
Sbjct: 258 TSLVSNWEAEIKKWVGESVKLIALCETTRDDVVSGIDSFANPRSNLQVLIVSYETFRMHS 317

Query: 312 SKFSCSESCDLLICDEAHRLKNDQTLTNR-------------------NDLEEFFAMVNF 352
           SKFS  ESCDLLICDEAHRLKNDQTLTNR                   NDLEEFFAMVNF
Sbjct: 318 SKFSHDESCDLLICDEAHRLKNDQTLTNRALAALSCKRRILLSGTPMQNDLEEFFAMVNF 377

Query: 353 TNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLS 412
           TNPGILGDAAYFRRYYET IICGREPTATEEEKKLG ERS ELSAKVNQFILRRTNALLS
Sbjct: 378 TNPGILGDAAYFRRYYETPIICGREPTATEEEKKLGAERSGELSAKVNQFILRRTNALLS 437

Query: 413 NHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPK 472
           NHLPPKI+EVVCCKLTPLQSELYNHFIHSKNVKRAI+EETK+SKILAYITALKKLCNHPK
Sbjct: 438 NHLPPKIVEVVCCKLTPLQSELYNHFIHSKNVKRAITEETKKSKILAYITALKKLCNHPK 497

Query: 473 LIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLR 532
           LIYDTI+SG PGT+GFEDCIRFFPP MFSGRSG+W+GGDG+W+ELSGKMHVLARLL HLR
Sbjct: 498 LIYDTIRSGTPGTSGFEDCIRFFPPGMFSGRSGTWSGGDGSWIELSGKMHVLARLLAHLR 557

Query: 533 QRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVF 592
           QRTDDRIVLVSNYTQTLDLFAQLCRERRYP+LRLDG TSI KRQKLVN FND SK+EFVF
Sbjct: 558 QRTDDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGATSIGKRQKLVNRFNDQSKDEFVF 617

Query: 593 LLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEE 652
           LLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAAR+WRDGQKKRV+IYRFLSTGTIEE
Sbjct: 618 LLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARIWRDGQKKRVYIYRFLSTGTIEE 677

Query: 653 KVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQ 712
           KVYQRQMSKEGLQKVIQ EQ DS+ ++GNFLSTEDLRDLFTF+ D+RSEIHE M+C RC 
Sbjct: 678 KVYQRQMSKEGLQKVIQHEQNDSTISEGNFLSTEDLRDLFTFYGDIRSEIHEKMNCDRCL 737

Query: 713 NYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEEDLN 772
             DDG ESI   DE  S ++  +SD+EV DIGGFA +AG LH+LKSSEKQ+GTPLEEDL 
Sbjct: 738 FNDDGLESI--MDEDGSVSRRCKSDEEVFDIGGFAKIAGILHELKSSEKQVGTPLEEDLG 795

Query: 773 NWGHHFYSMSVPDAILQASAGDEVTFVFTNQVDGKLVPIESKVSPKMQATEGNKNPNNHI 832
           +WGHHF+S SVPDAILQASAGDEVTFVFTNQVDGKLVPIES  SPKM   +GN+N ++  
Sbjct: 796 SWGHHFHSTSVPDAILQASAGDEVTFVFTNQVDGKLVPIESTASPKMLEIKGNQNQHDGK 855

Query: 833 TNPKPKLDQRSKLLSQHHKLLKDVPSLENSAKFSLSASSQP------KSMRTSLKG---- 882
            N       R+  L QH KLL+ + +  +S + +LSAS +P      K  RTSLKG    
Sbjct: 856 ENM-----SRTSRLFQHQKLLQSISASRDSLEETLSASFKPLEGATVKRRRTSLKGTTDS 910

Query: 883 AIKPKLSFGNQLPLKRFSPDNVE-HDDDFE 911
            +K +LS G QLP KR  P NVE HDDDFE
Sbjct: 911 TLKSRLSSGTQLPFKRVFPYNVEQHDDDFE 940

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359475198|ref|XP_002282100.2| PREDICTED: DNA repair and recombination protein RAD54-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449445882|ref|XP_004140701.1| PREDICTED: DNA repair and recombination protein RAD54-like [Cucumis sativus] gi|449497618|ref|XP_004160452.1| PREDICTED: DNA repair and recombination protein RAD54-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147834946|emb|CAN70202.1| hypothetical protein VITISV_021223 [Vitis vinifera] Back     alignment and taxonomy information
>gi|145338703|ref|NP_188552.3| Rad54-like protein [Arabidopsis thaliana] gi|112419506|dbj|BAF03042.1| Rad54 [Arabidopsis thaliana] gi|116518260|gb|ABJ99465.1| RAD54-like protein [Arabidopsis thaliana] gi|332642687|gb|AEE76208.1| Rad54-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297834836|ref|XP_002885300.1| hypothetical protein ARALYDRAFT_479436 [Arabidopsis lyrata subsp. lyrata] gi|297331140|gb|EFH61559.1| hypothetical protein ARALYDRAFT_479436 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356495839|ref|XP_003516779.1| PREDICTED: DNA repair and recombination protein RAD54-like [Glycine max] Back     alignment and taxonomy information
>gi|9294624|dbj|BAB02963.1| DNA repair protein RAD54-like [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334185464|ref|NP_001189933.1| Rad54-like protein [Arabidopsis thaliana] gi|332642688|gb|AEE76209.1| Rad54-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|403399531|sp|A4PBL4.1|RAD54_ORYSJ RecName: Full=DNA repair and recombination protein RAD54; Short=OsRad54 gi|144369229|dbj|BAF56217.1| OsRad54 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query911
TAIR|locus:2094083910 RAD54 "homolog of RAD54" [Arab 0.918 0.919 0.719 0.0
UNIPROTKB|F1S3V8747 RAD54L "Uncharacterized protei 0.628 0.767 0.467 2.7e-139
UNIPROTKB|A1L4Z4749 RAD54L "Uncharacterized protei 0.632 0.769 0.463 7.2e-139
UNIPROTKB|Q92698747 RAD54L "DNA repair and recombi 0.594 0.725 0.482 1.9e-138
UNIPROTKB|F1PJC9747 RAD54L "Uncharacterized protei 0.588 0.717 0.483 4e-138
MGI|MGI:894697747 Rad54l "RAD54 like (S. cerevis 0.709 0.864 0.427 2.8e-137
UNIPROTKB|B4KHL5783 okr "DNA repair and recombinat 0.641 0.745 0.439 6.6e-136
UNIPROTKB|B3MMA5791 okr "DNA repair and recombinat 0.598 0.689 0.455 2.8e-135
ZFIN|ZDB-GENE-040426-968738 rad54l "RAD54-like (S. cerevis 0.653 0.806 0.444 5.9e-135
WB|WBGene00004298818 rad-54 [Caenorhabditis elegans 0.613 0.683 0.452 3.2e-134
TAIR|locus:2094083 RAD54 "homolog of RAD54" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3168 (1120.3 bits), Expect = 0., P = 0.
 Identities = 634/881 (71%), Positives = 709/881 (80%)

Query:    52 RKSKNVDALVRGNLVVKRQSLLPRVLSVTEGAAVCRKPFKPPCSNGYDNGNDQLARRLCA 111
             RKSKNV  L+RGNLVV+RQ LLPRVLSV++GAAVCRKPFKPPCS+GYD+   QL+RRL A
Sbjct:    51 RKSKNVKDLLRGNLVVQRQPLLPRVLSVSDGAAVCRKPFKPPCSHGYDS-TGQLSRRLSA 109

Query:   112 RKRFVPWGSSRPVLVTITNRLDLPRTVENNVIEENFTLPPGVDPLVLWQPEEPQNDG-GN 170
             RKRFVPWGSS PV+V +  +L+    +E +  EE   LPP ++PLVLWQ EE   DG  N
Sbjct:   110 RKRFVPWGSSTPVVVALPTKLEASTNIERDEEEEVVCLPPDIEPLVLWQSEE---DGMSN 166

Query:   171 LVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLY 230
             +  I V  +LV+FLRPHQREGVQFMF+CVSGL  +A I+GCILADDMGLGKTLQSI LLY
Sbjct:   167 VTTIMVHSVLVKFLRPHQREGVQFMFDCVSGLHGSANINGCILADDMGLGKTLQSITLLY 226

Query:   231 TLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSF 290
             TLLCQGFDG PMVKKAIIVTPTSLVSNWEAEIKKWVG R+QLIALCESTRDDV+SGIDSF
Sbjct:   227 TLLCQGFDGTPMVKKAIIVTPTSLVSNWEAEIKKWVGDRIQLIALCESTRDDVLSGIDSF 286

Query:   291 TDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTNR---------- 340
             T P S+LQVLI+SYETFRMHSSKF  SESCDLLICDEAHRLKNDQTLTNR          
Sbjct:   287 TRPRSALQVLIISYETFRMHSSKFCQSESCDLLICDEAHRLKNDQTLTNRALASLTCKRR 346

Query:   341 ---------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGIER 391
                      NDLEEFFAMVNFTNPG LGDAA+FR YYE  IICGREPTATEEEK L  +R
Sbjct:   347 VLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGREPTATEEEKNLAADR 406

Query:   392 SSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEE 451
             S+ELS+KVNQFILRRTNALLSNHLPPKIIEVVCCK+T LQS LYNHFI SKN+KRA+++ 
Sbjct:   407 SAELSSKVNQFILRRTNALLSNHLPPKIIEVVCCKMTTLQSTLYNHFISSKNLKRALADN 466

Query:   452 TKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGD 511
              KQ+K+LAYITALKKLCNHPKLIYDTIKSGNPGT GFE+C+ FFP EMFSGRSG+WTGGD
Sbjct:   467 AKQTKVLAYITALKKLCNHPKLIYDTIKSGNPGTVGFENCLEFFPAEMFSGRSGAWTGGD 526

Query:   512 GAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTS 571
             GAWVELSGKMHVL+RLL +LR++TDDRIVLVSNYTQTLDLFAQLCRERRYP+LRLDG+T+
Sbjct:   527 GAWVELSGKMHVLSRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTT 586

Query:   572 ISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVW 631
             ISKRQKLVN  NDP+K+EF FLLSSKAGGCGLNLIG NRLVLFDPDWNPANDKQAAARVW
Sbjct:   587 ISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVW 646

Query:   632 RDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDL 691
             RDGQKKRV++YRFLSTGTIEEKVYQRQMSKEGLQKVIQ EQTD+S  QGN LSTEDLRDL
Sbjct:   647 RDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQKVIQHEQTDNSTRQGNLLSTEDLRDL 706

Query:   692 FTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAG 751
             F+FH DVRSEIHE M C+RCQN   G E+I EG+E N  +   Q DQE  DIGGFA  AG
Sbjct:   707 FSFHGDVRSEIHEKMSCSRCQNDASGTENIEEGNENNVDDNACQIDQE--DIGGFAKDAG 764

Query:   752 CLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFTNQVDGKLVPI 811
             C + LK+SE+Q+GTPLEEDL +WGHHF S SVPDAILQASAGDEVTFVFTNQVDGKLVPI
Sbjct:   765 CFNLLKNSERQVGTPLEEDLGSWGHHFTSKSVPDAILQASAGDEVTFVFTNQVDGKLVPI 824

Query:   812 ESKVSPK-MQATEGNKN-PNNHITNPKPKLDQRXXXXXXXXXXXXDVPSLENSAKFSLSA 869
             ES VSPK +++ E N+N P N     KP+   R                L    +   ++
Sbjct:   825 ESNVSPKTVESEEHNRNQPVNKRAFNKPQQRPREPLQPLSLNETTKRVKLSTYKRLHGNS 884

Query:   870 SSQPKSMRTSLKGAIKPKLSFGNQLPLKRFSPDNVEHDDDF 910
             +     ++ SL+   +P L              +V HDDDF
Sbjct:   885 NIDDAQIKMSLQ---RPNLV-------------SVNHDDDF 909
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0004386 "helicase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006281 "DNA repair" evidence=ISS
GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA;IMP
GO:0005515 "protein binding" evidence=IPI
GO:0010332 "response to gamma radiation" evidence=IEP;RCA
GO:0006302 "double-strand break repair" evidence=RCA
GO:0006310 "DNA recombination" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0007126 "meiosis" evidence=RCA
GO:0007129 "synapsis" evidence=RCA
GO:0007131 "reciprocal meiotic recombination" evidence=RCA
GO:0007140 "male meiosis" evidence=RCA
GO:0010212 "response to ionizing radiation" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016444 "somatic cell DNA recombination" evidence=RCA
GO:0032204 "regulation of telomere maintenance" evidence=RCA
GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0045003 "double-strand break repair via synthesis-dependent strand annealing" evidence=IDA
UNIPROTKB|F1S3V8 RAD54L "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A1L4Z4 RAD54L "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q92698 RAD54L "DNA repair and recombination protein RAD54-like" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PJC9 RAD54L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:894697 Rad54l "RAD54 like (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|B4KHL5 okr "DNA repair and recombination protein RAD54-like" [Drosophila mojavensis (taxid:7230)] Back     alignment and assigned GO terms
UNIPROTKB|B3MMA5 okr "DNA repair and recombination protein RAD54-like" [Drosophila ananassae (taxid:7217)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-968 rad54l "RAD54-like (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00004298 rad-54 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A4PBL4RAD54_ORYSJ3, ., 6, ., 4, ., -0.73700.83310.7744yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.12LOW CONFIDENCE prediction!
3rd Layer3.6.40.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query911
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 1e-83
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 2e-63
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 9e-62
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 3e-23
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 7e-22
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 8e-19
smart0049082 smart00490, HELICc, helicase superfamily c-termina 1e-18
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 2e-16
pfam00270169 pfam00270, DEAD, DEAD/DEAH box helicase 0.001
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  287 bits (735), Expect = 1e-83
 Identities = 192/619 (31%), Positives = 283/619 (45%), Gaps = 87/619 (14%)

Query: 125 LVTITNRLDLPRTVENNVIEENFTLPPGVDPLVLWQPEEPQNDGGNLVPITVDPLLVRFL 184
           L+      DL + +E  V E        +   +     E +     L       L    L
Sbjct: 281 LLDPLRLADLSQILEKFVRETLKLSARDLKDELKELLAELRLSEDLLNAPEPVDLSAE-L 339

Query: 185 RPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVK 244
           RP+Q EGV ++ E    LL +  + G ILADDMGLGKT+Q+IALL +LL      K  + 
Sbjct: 340 RPYQLEGVNWLSE----LLRSNLL-GGILADDMGLGKTVQTIALLLSLLESI---KVYLG 391

Query: 245 KAIIVTPTSLVSNWEAEIKKWVGGRVQLIAL----------CESTRDDVVSGIDSFTDPC 294
            A+IV P SL+SNW+ E +K+      ++             E+ RD +   +    D  
Sbjct: 392 PALIVVPASLLSNWKREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFD-- 449

Query: 295 SSLQVLIVSYETFRMHSSKFS--CSESCDLLICDEAHRLKNDQTLTNR------------ 340
               V+I +YE  R              D ++ DEAHR+KNDQ+   +            
Sbjct: 450 ----VVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLD 505

Query: 341 -------NDLEEFFAMVNFT-NPGILGDA-AYFRRYYETSIICGREPTATEEEKKLGIER 391
                  N L E ++++    NPG+LG + A F R +E   I   E     E ++LGIE 
Sbjct: 506 LTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEK-PIQAEEDIGPLEARELGIEL 564

Query: 392 SSELSAKVNQFILRRTNA--LLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSK-----NV 444
              L   ++ FILRRT     +   LPPKI +V+ C+L+  Q ELY   +         +
Sbjct: 565 ---LRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLL 621

Query: 445 KRAISE-------ETKQSKILAYITALKKLCNHPKLIYD--TIKSGNPGTTGFEDCIRFF 495
           +               +  ILA +T L+++CNHP L+ +              ED    +
Sbjct: 622 EDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDY 681

Query: 496 PPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGH--LRQRTDDRIVLVSNYTQTLDLFA 553
             +     S              GK+  L  LL    L +    ++++ S +T  LDL  
Sbjct: 682 LKKPLIQLS-------------KGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLE 728

Query: 554 QLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVL 613
              +     Y+RLDG+T   +RQ+L++ FN   + E VFLLS KAGG GLNL G + ++L
Sbjct: 729 DYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVIL 787

Query: 614 FDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQT 673
           FDP WNPA + QA  R  R GQK+ V +YR ++ GTIEEK+ + Q  K+ L   +   + 
Sbjct: 788 FDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEG 847

Query: 674 DSSATQGNFLSTEDLRDLF 692
           +    + + LS EDL DLF
Sbjct: 848 EK---ELSKLSIEDLLDLF 863

Length = 866
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 911
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 100.0
KOG0387923 consensus Transcription-coupled repair protein CSB 100.0
KOG0385 971 consensus Chromatin remodeling complex WSTF-ISWI, 100.0
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 100.0
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 100.0
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 100.0
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 100.0
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 100.0
KOG10151567 consensus Transcription regulator XNP/ATRX, DEAD-b 100.0
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 100.0
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 100.0
KOG1002791 consensus Nucleotide excision repair protein RAD16 100.0
KOG4439901 consensus RNA polymerase II transcription terminat 100.0
KOG1016 1387 consensus Predicted DNA helicase, DEAD-box superfa 100.0
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 100.0
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 100.0
PRK04914956 ATP-dependent helicase HepA; Validated 100.0
KOG1001674 consensus Helicase-like transcription factor HLTF/ 100.0
KOG0383696 consensus Predicted helicase [General function pre 100.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 100.0
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 100.0
PRK13766773 Hef nuclease; Provisional 100.0
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.97
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 99.96
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.95
KOG0298 1394 consensus DEAD box-containing helicase-like transc 99.95
PHA02558501 uvsW UvsW helicase; Provisional 99.95
PTZ00110545 helicase; Provisional 99.94
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 99.93
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 99.93
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.93
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.93
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.93
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.92
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.92
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.92
KOG0354746 consensus DEAD-box like helicase [General function 99.92
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 99.91
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 99.91
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.91
KOG1123776 consensus RNA polymerase II transcription initiati 99.9
PTZ00424401 helicase 45; Provisional 99.9
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.89
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 99.89
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 99.89
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 99.89
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 99.87
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 99.86
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.85
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.85
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.84
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.84
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.84
PRK13767 876 ATP-dependent helicase; Provisional 99.83
PRK02362737 ski2-like helicase; Provisional 99.83
PRK106891147 transcription-repair coupling factor; Provisional 99.83
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 99.81
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 99.81
PRK01172674 ski2-like helicase; Provisional 99.8
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 99.8
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.8
KOG0347731 consensus RNA helicase [RNA processing and modific 99.8
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.79
KOG0343758 consensus RNA Helicase [RNA processing and modific 99.79
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 99.78
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.78
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 99.77
PRK00254720 ski2-like helicase; Provisional 99.77
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.76
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 99.74
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.74
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 99.73
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 99.72
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 99.72
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 99.7
PRK09401 1176 reverse gyrase; Reviewed 99.7
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.7
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.69
COG4096875 HsdR Type I site-specific restriction-modification 99.69
KOG0346569 consensus RNA helicase [RNA processing and modific 99.68
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.68
KOG4284 980 consensus DEAD box protein [Transcription] 99.67
COG1201 814 Lhr Lhr-like helicases [General function predictio 99.67
KOG0334997 consensus RNA helicase [RNA processing and modific 99.67
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.66
PHA02653675 RNA helicase NPH-II; Provisional 99.66
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.66
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 99.65
COG1205 851 Distinct helicase family with a unique C-terminal 99.64
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.64
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 99.63
COG4889 1518 Predicted helicase [General function prediction on 99.63
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.6
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.59
PRK05580679 primosome assembly protein PriA; Validated 99.59
PRK14701 1638 reverse gyrase; Provisional 99.58
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.56
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.55
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 99.54
COG1202830 Superfamily II helicase, archaea-specific [General 99.54
COG1204766 Superfamily II helicase [General function predicti 99.54
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 99.53
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 99.53
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.5
KOG0327397 consensus Translation initiation factor 4F, helica 99.49
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.47
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.44
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.43
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 99.43
PRK09694878 helicase Cas3; Provisional 99.43
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.42
smart0049082 HELICc helicase superfamily c-terminal domain. 99.42
PRK13107908 preprotein translocase subunit SecA; Reviewed 99.41
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.36
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.36
PRK05298652 excinuclease ABC subunit B; Provisional 99.34
KOG0351941 consensus ATP-dependent DNA helicase [Replication, 99.29
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 99.28
smart00487201 DEXDc DEAD-like helicases superfamily. 99.2
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 99.19
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.16
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.15
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 99.13
PF11496297 HDA2-3: Class II histone deacetylase complex subun 99.12
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.12
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.11
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.1
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.09
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.02
PRK12326764 preprotein translocase subunit SecA; Reviewed 98.99
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 98.97
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 98.92
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 98.92
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 98.9
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 98.88
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 98.88
KOG0353695 consensus ATP-dependent DNA helicase [General func 98.81
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 98.78
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 98.73
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 98.66
KOG1513 1300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 98.65
TIGR00596814 rad1 DNA repair protein (rad1). This family is bas 98.63
CHL00122870 secA preprotein translocase subunit SecA; Validate 98.51
KOG0948 1041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 98.51
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 98.5
KOG0949 1330 consensus Predicted helicase, DEAD-box superfamily 98.49
COG1198730 PriA Primosomal protein N' (replication factor Y) 98.48
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 98.48
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 98.46
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 98.45
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 98.43
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 98.4
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 98.37
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 98.36
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 98.32
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 98.32
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 98.31
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 98.25
KOG09501008 consensus DNA polymerase theta/eta, DEAD-box super 98.2
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 98.19
COG0610962 Type I site-specific restriction-modification syst 98.14
PRK15483 986 type III restriction-modification system StyLTI en 98.09
PF13871278 Helicase_C_4: Helicase_C-like 98.04
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 97.91
KOG0920 924 consensus ATP-dependent RNA helicase A [RNA proces 97.9
smart00489289 DEXDc3 DEAD-like helicases superfamily. 97.76
smart00488289 DEXDc2 DEAD-like helicases superfamily. 97.76
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 97.6
KOG0926 1172 consensus DEAH-box RNA helicase [RNA processing an 97.59
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 97.38
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 97.2
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 97.18
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 97.03
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 96.5
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 96.49
KOG4150 1034 consensus Predicted ATP-dependent RNA helicase [RN 96.28
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 96.24
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 96.0
PRK14873665 primosome assembly protein PriA; Provisional 95.96
KOG1803649 consensus DNA helicase [Replication, recombination 95.96
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 95.9
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 95.79
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 95.6
KOG18051100 consensus DNA replication helicase [Replication, r 95.39
PRK04296190 thymidine kinase; Provisional 95.38
COG3587 985 Restriction endonuclease [Defense mechanisms] 95.25
PRK10536262 hypothetical protein; Provisional 95.19
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 94.76
KOG1131755 consensus RNA polymerase II transcription initiati 94.32
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 93.77
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 93.6
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 93.56
KOG1133821 consensus Helicase of the DEAD superfamily [Replic 93.55
KOG1132945 consensus Helicase of the DEAD superfamily [Replic 93.55
PRK08116268 hypothetical protein; Validated 93.35
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 93.31
PRK10875615 recD exonuclease V subunit alpha; Provisional 93.08
PRK06835329 DNA replication protein DnaC; Validated 92.83
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 92.63
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 92.49
COG3421 812 Uncharacterized protein conserved in bacteria [Fun 92.37
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 91.96
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 91.67
smart00382148 AAA ATPases associated with a variety of cellular 91.58
PF10446458 DUF2457: Protein of unknown function (DUF2457); In 91.46
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 91.42
PRK06526254 transposase; Provisional 91.3
PF1324576 AAA_19: Part of AAA domain 91.22
TIGR00376637 DNA helicase, putative. The gene product may repre 91.19
PTZ001121164 origin recognition complex 1 protein; Provisional 91.03
smart00492141 HELICc3 helicase superfamily c-terminal domain. 90.36
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 90.27
smart00491142 HELICc2 helicase superfamily c-terminal domain. 90.1
PRK07471365 DNA polymerase III subunit delta'; Validated 89.31
PRK08181269 transposase; Validated 89.03
PRK05707328 DNA polymerase III subunit delta'; Validated 88.98
PRK14087450 dnaA chromosomal replication initiation protein; P 88.84
PRK06921266 hypothetical protein; Provisional 87.99
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 87.61
PRK09112351 DNA polymerase III subunit delta'; Validated 86.99
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 86.98
COG1435201 Tdk Thymidine kinase [Nucleotide transport and met 85.97
TIGR02928365 orc1/cdc6 family replication initiation protein. M 85.9
PRK14974336 cell division protein FtsY; Provisional 85.87
PRK00771437 signal recognition particle protein Srp54; Provisi 85.75
PRK08084235 DNA replication initiation factor; Provisional 85.7
PRK08727233 hypothetical protein; Validated 85.51
KOG0780483 consensus Signal recognition particle, subunit Srp 85.42
PF06733174 DEAD_2: DEAD_2; InterPro: IPR010614 This represent 85.37
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 85.34
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 85.22
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 85.01
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 84.64
PRK08769319 DNA polymerase III subunit delta'; Validated 84.57
PRK07764824 DNA polymerase III subunits gamma and tau; Validat 84.44
COG1484254 DnaC DNA replication protein [DNA replication, rec 84.39
CHL00181287 cbbX CbbX; Provisional 84.34
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 84.32
PLN03025319 replication factor C subunit; Provisional 84.25
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 84.05
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 83.96
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 83.84
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 83.51
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 83.47
PTZ00293211 thymidine kinase; Provisional 83.23
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 82.72
PRK07952244 DNA replication protein DnaC; Validated 82.7
PRK00149450 dnaA chromosomal replication initiation protein; R 82.58
PRK11054684 helD DNA helicase IV; Provisional 82.54
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 82.53
PRK12422445 chromosomal replication initiation protein; Provis 82.24
PRK06871325 DNA polymerase III subunit delta'; Validated 81.79
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 81.67
PRK00411394 cdc6 cell division control protein 6; Reviewed 81.59
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 81.41
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 81.32
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 81.27
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 81.16
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 81.13
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 80.94
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 80.62
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 80.38
PRK07003830 DNA polymerase III subunits gamma and tau; Validat 80.23
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=9e-93  Score=828.41  Aligned_cols=520  Identities=47%  Similarity=0.758  Sum_probs=450.4

Q ss_pred             cccccChhhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEeC
Q 043990          172 VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTP  251 (911)
Q Consensus       172 ~~v~v~p~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~P  251 (911)
                      +.++++|.+...|||||+||+.|||+|++|.....+.+|||+||+||+|||+|+|++||++++++|.+.|.+.++|||||
T Consensus       227 v~v~~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P  306 (776)
T KOG0390|consen  227 VHVVIDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP  306 (776)
T ss_pred             ceEEecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc
Confidence            78899999999999999999999999999976545789999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHhCC-CeEEEEecCCcchhhhccCcc---cCCCCCCccEEEEehHHHHhhccccccCCCCcEEEEcC
Q 043990          252 TSLVSNWEAEIKKWVGG-RVQLIALCESTRDDVVSGIDS---FTDPCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDE  327 (911)
Q Consensus       252 ~sLl~qW~~Ei~k~~~~-~~~v~~~~~~~r~~~~~~~~~---~~~~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDE  327 (911)
                      ++||.||++||.||.+. ++..+.+++.... .+.....   +......+.|.|+||++++.+...+. ...+++|||||
T Consensus       307 ~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il-~~~~glLVcDE  384 (776)
T KOG0390|consen  307 SSLVNNWKKEFGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLGYKQFTTPVLIISYETASDYCRKIL-LIRPGLLVCDE  384 (776)
T ss_pred             HHHHHHHHHHHHHhccccccceeeeecccch-hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHh-cCCCCeEEECC
Confidence            99999999999999985 7888888777664 1111111   11222345799999999998777766 67899999999


Q ss_pred             ccccCCccchhcc-------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhh
Q 043990          328 AHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLG  388 (911)
Q Consensus       328 AH~lKN~~s~~~~-------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~  388 (911)
                      ||++||..+++.+                   |++.|+|++++|++|+++|+...|++.|..|+..+++..++..+... 
T Consensus       385 GHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~-  463 (776)
T KOG0390|consen  385 GHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER-  463 (776)
T ss_pred             CCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh-
Confidence            9999999987765                   99999999999999999999999999999999999999999888877 


Q ss_pred             hhHHHHHHHHhhHHhhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHh
Q 043990          389 IERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLC  468 (911)
Q Consensus       389 ~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~Lrklc  468 (911)
                      .+++++|..+++.|++||+.+.+.++||++.+++|+|.+++.|+.+|+.++... ....+.+     ..+..+..|+++|
T Consensus       464 ~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~~~~~-----~~l~~~~~L~k~c  537 (776)
T KOG0390|consen  464 EERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMRTLKG-----YALELITKLKKLC  537 (776)
T ss_pred             HHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhhhhhc-----chhhHHHHHHHHh
Confidence            777999999999999999999999999999999999999999999999998775 4433322     2788899999999


Q ss_pred             cChhhhH-hhhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchH
Q 043990          469 NHPKLIY-DTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQ  547 (911)
Q Consensus       469 nhP~Ll~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~  547 (911)
                      +||.|+. ......   ...+........+..+        ..+......|+|+..|..++..+++....++++.++|++
T Consensus       538 nhP~L~~~~~~~~~---e~~~~~~~~~~~~~~~--------~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~  606 (776)
T KOG0390|consen  538 NHPSLLLLCEKTEK---EKAFKNPALLLDPGKL--------KLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQ  606 (776)
T ss_pred             cCHHhhcccccccc---cccccChHhhhccccc--------ccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHH
Confidence            9999985 211111   1111000000000000        011122345999999999998888878899999999999


Q ss_pred             HHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHH
Q 043990          548 TLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAA  627 (911)
Q Consensus       548 ~ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAi  627 (911)
                      ++++++.+|+.+|+.+++|||+|+..+|+++|+.||++.+..+|||+|+||||+||||+||+|||+|||+|||+.+.|||
T Consensus       607 tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAm  686 (776)
T KOG0390|consen  607 TLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAM  686 (776)
T ss_pred             HHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHH
Confidence            99999999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             HhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHhhccCCCchhhhhhhcc
Q 043990          628 ARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMH  707 (911)
Q Consensus       628 gR~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~~v~~~~~~~~~~~~~~~s~~eL~~Lf~~~~~~~~~t~d~~~  707 (911)
                      +||||+||+|+||||||+++|||||+||+||.+|+.|+.+|++...+.    ..+++.++++.+|....++.++||+..+
T Consensus       687 aR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~----~~~~~~~~~~~lf~~~~~~~~e~~~~~~  762 (776)
T KOG0390|consen  687 ARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDV----EKHFFTEDLKTLFDLELDTIVETHKLKK  762 (776)
T ss_pred             HHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEeccccc----ccccchHHHHHHHhhhccccccchhhhh
Confidence            999999999999999999999999999999999999999999876554    5678889999999999999999999999


Q ss_pred             ccccccCC
Q 043990          708 CTRCQNYD  715 (911)
Q Consensus       708 c~~c~~~~  715 (911)
                      |.||...+
T Consensus       763 ~~~~~~~~  770 (776)
T KOG0390|consen  763 SKDCLLKN  770 (776)
T ss_pred             hHHHhhcc
Confidence            99998653

>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PTZ00293 thymidine kinase; Provisional Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK11054 helD DNA helicase IV; Provisional Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query911
1z3i_X644 Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA 1e-141
3mwy_W800 Crystal Structure Of The Chromodomain-atpase Portio 8e-49
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 2e-38
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 7e-35
1z5z_A271 Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal 3e-20
3dmq_A 968 Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT 1e-05
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 Back     alignment and structure 
Iteration: 1

 Score =  500 bits (1287), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/651 (43%), Positives = 383/651 (58%), Gaps = 81/651 (12%)
Query: 172 VPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYT 231
           V + VDP+L + LRPHQREGV+F+++CV+G       +GCI+AD+MGLGKTLQ I L++T
Sbjct: 44  VHVVVDPVLSKVLRPHQREGVKFLWDCVTGR-RIENSYGCIMADEMGLGKTLQCITLIWT 102
Query: 232 LLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFT 291
           LL Q  D KP + K I+V+P+SLV NW  E+ KW+GGRVQ +A+   ++D++ S + +F 
Sbjct: 103 LLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFI 162
Query: 292 DPCS---SLQVLIVSYETFRMHSSKFSCSESCDLLICDEAHRLKNDQTLTN--------- 339
                     +LI+SYETFR+H+          L+ICDE HRLKN    T          
Sbjct: 163 SQQGMRIPTPILIISYETFRLHAEVLH-KGKVGLVICDEGHRLKNSDNQTYLALNSMNAQ 221
Query: 340 ----------RNDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLGI 389
                     +NDL E+F++V+F N GILG A  F++ +E  I+ GR+  A+++++  G 
Sbjct: 222 RRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGE 281
Query: 390 ERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAIS 449
           ++  EL + VN+ ++RRT+ +LS +LP KI +VVCC LTPLQ ELY  F+       ++ 
Sbjct: 282 QKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQ 341
Query: 450 EETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTG 509
                   L+ IT+LKKLCNHP LIY+   +G  G  G  D      P+ +S ++     
Sbjct: 342 TGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLF----PQNYSTKAVE--- 394
Query: 510 GDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGT 569
                 +LSGKM VL  +L   R  T D++VLVSNYTQTLDLF +LCR RRY Y+RLDGT
Sbjct: 395 -----PQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGT 449
Query: 570 TSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAAR 629
            SI KR K+V  FN+PS  EF+F+LSSKAGGCGLNLIG NRLV+FDPDWNPAND+QA AR
Sbjct: 450 MSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMAR 509
Query: 630 VWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLR 689
           VWRDGQKK  +IYR LSTGTIEEK+ QRQ  K+ L   +  E+ D         S  +LR
Sbjct: 510 VWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVE----RHFSLGELR 565
Query: 690 DLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGL 749
           +LF+ ++   S+ H+   C RC N   G +     D+++                     
Sbjct: 566 ELFSLNEKTLSDTHDRFRCRRCVN---GRQVRPPPDDSDCT------------------- 603
Query: 750 AGCLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVF 800
             C                 DL+NW H      + D +LQAS    V+FVF
Sbjct: 604 --C-----------------DLSNWHHCADKRGLRDPVLQASWDAAVSFVF 635
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 Back     alignment and structure
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 Back     alignment and structure
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT Recycles Rna Polymerase During Transcription Length = 968 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query911
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 0.0
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 1e-104
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 1e-100
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 4e-80
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 8e-62
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 2e-48
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 8e-23
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 2e-14
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 4e-09
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 7e-09
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 1e-08
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 7e-08
3b6e_A216 Interferon-induced helicase C domain-containing P; 3e-04
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
 Score =  786 bits (2031), Expect = 0.0
 Identities = 287/684 (41%), Positives = 387/684 (56%), Gaps = 90/684 (13%)

Query: 150 PPGVDPLVLWQPEEP-------QNDGGNLVPITVDPLLVRFLRPHQREGVQFMFECVSGL 202
           P     LVL++P           +     V + VDP+L + LRPHQREGV+F+++CV+G 
Sbjct: 15  PFEDGALVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTGR 74

Query: 203 LNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEI 262
                 +GCI+AD+MGLGKTLQ I L++TLL Q  D KP + K I+V+P+SLV NW  E+
Sbjct: 75  RIENS-YGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133

Query: 263 KKWVGGRVQLIALCESTRDDVVSGIDSFTDPCSSL---QVLIVSYETFRMHSSKFSCSES 319
            KW+GGRVQ +A+   ++D++ S + +F           +LI+SYETFR+H+        
Sbjct: 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLH-KGK 192

Query: 320 CDLLICDEAHRLKNDQTLT----------NR---------NDLEEFFAMVNFTNPGILGD 360
             L+ICDE HRLKN    T           R         NDL E+F++V+F N GILG 
Sbjct: 193 VGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGT 252

Query: 361 AAYFRRYYETSIICGREPTATEEEKKLGIERSSELSAKVNQFILRRTNALLSNHLPPKII 420
           A  F++ +E  I+ GR+  A+++++  G ++  EL + VN+ ++RRT+ +LS +LP KI 
Sbjct: 253 AQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIE 312

Query: 421 EVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKS 480
           +VVCC LTPLQ ELY  F+       ++         L+ IT+LKKLCNHP LIY+   +
Sbjct: 313 QVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLT 372

Query: 481 GNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIV 540
           G  G   F+  +  FP    +              +LSGKM VL  +L   R  T D++V
Sbjct: 373 GEEG---FDGALDLFPQNYST---------KAVEPQLSGKMLVLDYILAMTRTTTSDKVV 420

Query: 541 LVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGG 600
           LVSNYTQTLDLF +LCR RRY Y+RLDGT SI KR K+V  FN+PS  EF+F+LSSKAGG
Sbjct: 421 LVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGG 480

Query: 601 CGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMS 660
           CGLNLIG NRLV+FDPDWNPAND+QA ARVWRDGQKK  +IYR LSTGTIEEK+ QRQ  
Sbjct: 481 CGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAH 540

Query: 661 KEGL-QKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAE 719
           K+ L   V+ +EQ           S  +LR+LF+ ++   S+ H+   C RC N      
Sbjct: 541 KKALSSCVVDEEQDVE-----RHFSLGELRELFSLNEKTLSDTHDRFRCRRCVN------ 589

Query: 720 SIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEEDLNNWGHHFY 779
               G +      +                                    DL+NW H   
Sbjct: 590 ----GRQVRPPPDDSD-------------------------------CTCDLSNWHHCAD 614

Query: 780 SMSVPDAILQASAGDEVTFVFTNQ 803
              + D +LQAS    V+FVF  +
Sbjct: 615 KRGLRDPVLQASWDAAVSFVFHQR 638
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query911
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 100.0
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 100.0
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 100.0
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 100.0
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 100.0
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 100.0
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 100.0
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 100.0
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 99.98
4gl2_A699 Interferon-induced helicase C domain-containing P; 99.97
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 99.97
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 99.97
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 99.97
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 99.96
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 99.96
3h1t_A590 Type I site-specific restriction-modification syst 99.96
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 99.96
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 99.96
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 99.95
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 99.95
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 99.95
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 99.95
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 99.95
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 99.94
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 99.94
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 99.93
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 99.92
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 99.92
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 99.92
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.92
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 99.91
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 99.9
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 99.9
2eyq_A1151 TRCF, transcription-repair coupling factor; MFD, S 99.9
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 99.88
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 99.87
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 99.86
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 99.86
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 99.85
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 99.79
2w00_A1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.79
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 99.79
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.75
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.75
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.74
1tf5_A844 Preprotein translocase SECA subunit; ATPase, helic 99.74
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 99.72
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.72
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 99.71
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.71
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 99.7
1nkt_A922 Preprotein translocase SECA 1 subunit; preprotein 99.7
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 99.69
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 99.69
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.68
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.67
1yks_A440 Genome polyprotein [contains: flavivirin protease 99.67
2xau_A773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 99.66
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 99.66
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.47
4f92_B1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.63
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 99.63
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.61
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.61
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 99.59
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 99.59
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.58
3jux_A822 Protein translocase subunit SECA; protein transloc 99.52
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.48
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 99.44
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 99.43
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 99.42
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 99.37
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 99.36
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 99.35
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 99.34
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 99.34
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 99.33
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 99.33
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 99.32
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 99.31
3bor_A237 Human initiation factor 4A-II; translation initiat 99.29
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 99.28
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 99.24
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 99.22
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.15
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.04
2ipc_A 997 Preprotein translocase SECA subunit; nucleotide bi 98.98
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 98.54
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 98.44
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 97.94
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 97.1
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 96.72
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 96.39
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 96.2
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 96.09
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 95.95
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 95.37
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 94.99
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 94.31
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 94.09
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 93.46
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 92.63
2o0j_A385 Terminase, DNA packaging protein GP17; nucleotide- 92.4
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 91.86
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 91.86
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 91.47
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 91.14
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 90.3
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 89.68
3cpe_A592 Terminase, DNA packaging protein GP17; large termi 89.6
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 89.0
3lfu_A647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 88.24
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 83.59
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 82.93
3bos_A242 Putative DNA replication factor; P-loop containing 82.84
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 82.44
2r6a_A454 DNAB helicase, replicative helicase; replication, 82.0
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 81.35
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 80.08
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
Probab=100.00  E-value=4.3e-93  Score=861.23  Aligned_cols=578  Identities=48%  Similarity=0.826  Sum_probs=486.9

Q ss_pred             CcccccChhhhccChHHHHHHHHHHHHhhhccccccCCCceEEEcCCCchHHHHHHHHHHHHHhcCCCCCCCCceEEEEe
Q 043990          171 LVPITVDPLLVRFLRPHQREGVQFMFECVSGLLNAAGIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVKKAIIVT  250 (911)
Q Consensus       171 ~~~v~v~p~l~~~LrphQ~egV~~m~~~~~g~l~~~~~~G~ILADemGLGKTlqaIali~~ll~~g~~~~p~~~~~LIV~  250 (911)
                      .+.+.+||.+...|||||++||.||++++.|.. ..+.+||||||+||+|||+|+|++++.++.+++..+|..+++||||
T Consensus        43 ~~~~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~-~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~  121 (644)
T 1z3i_X           43 PVHVVVDPVLSKVLRPHQREGVKFLWDCVTGRR-IENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVS  121 (644)
T ss_dssp             CCCEECCHHHHTTCCHHHHHHHHHHHHHHTTSS-STTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEE
T ss_pred             CceEeeChhhhhcccHHHHHHHHHHHHhhhccc-ccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEe
Confidence            356788999999999999999999999876532 2456789999999999999999999999998877777788999999


Q ss_pred             CchhhHHHHHHHHHHhCCCeEEEEecCCcchhhhccCcccCC---CCCCccEEEEehHHHHhhccccccCCCCcEEEEcC
Q 043990          251 PTSLVSNWEAEIKKWVGGRVQLIALCESTRDDVVSGIDSFTD---PCSSLQVLIVSYETFRMHSSKFSCSESCDLLICDE  327 (911)
Q Consensus       251 P~sLl~qW~~Ei~k~~~~~~~v~~~~~~~r~~~~~~~~~~~~---~~~~~~VvI~Sye~l~~~~~~~~~~~~~~lVIlDE  327 (911)
                      |++|+.||.+||.+|++..+.++.++++.+......+..+..   ....++|+|+||++++.+...+. ...|++|||||
T Consensus       122 P~sll~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~-~~~~~~vI~DE  200 (644)
T 1z3i_X          122 PSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLH-KGKVGLVICDE  200 (644)
T ss_dssp             CHHHHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTT-TSCCCEEEETT
T ss_pred             cHHHHHHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhh-cCCccEEEEEC
Confidence            999999999999999987666666666554332222111111   11346899999999988776654 56899999999


Q ss_pred             ccccCCccchhcc-------------------CCHHHHHHhhhhcCCCCCCCHHHHHHHHhhhhccCCCCCCcHHHHHhh
Q 043990          328 AHRLKNDQTLTNR-------------------NDLEEFFAMVNFTNPGILGDAAYFRRYYETSIICGREPTATEEEKKLG  388 (911)
Q Consensus       328 AH~lKN~~s~~~~-------------------N~l~El~sLl~fl~P~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~  388 (911)
                      ||++||..++.++                   |++.|||++++|++|+++++...|.+.|..|+..++...++..+...+
T Consensus       201 aH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~  280 (644)
T 1z3i_X          201 GHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAG  280 (644)
T ss_dssp             GGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHH
T ss_pred             ceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHH
Confidence            9999999876654                   999999999999999999999999999999999999998888888889


Q ss_pred             hhHHHHHHHHhhHHhhhhcHHHHhccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHh
Q 043990          389 IERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLC  468 (911)
Q Consensus       389 ~~~~~eL~~~l~~~ilRRtk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~Lrklc  468 (911)
                      ..++.+|+.++.+|++||++.++..+||++.+.+++|+|++.|+.+|+.++........+.........+..++.||++|
T Consensus       281 ~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c  360 (644)
T 1z3i_X          281 EQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLC  360 (644)
T ss_dssp             HHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998765432222222223456788999999999


Q ss_pred             cChhhhHhhhhcCCCCCCCcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHH
Q 043990          469 NHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQT  548 (911)
Q Consensus       469 nhP~Ll~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~  548 (911)
                      +||.++.........   .+..+...++..+.         ........|+|+.+|..++..+....++|+||||+|+.+
T Consensus       361 ~hp~l~~~~~~~~~~---~~~~~~~~~~~~~~---------~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~  428 (644)
T 1z3i_X          361 NHPALIYEKCLTGEE---GFDGALDLFPQNYS---------TKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQT  428 (644)
T ss_dssp             HCTHHHHHHHHHTCT---TCTTGGGTSCSSCC---------SSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHH
T ss_pred             CCHHHHHHHHhcccc---hhhhHHhhcccccc---------ccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHH
Confidence            999999876543322   22233333332211         112234569999999999999876568999999999999


Q ss_pred             HHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHH
Q 043990          549 LDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAA  628 (911)
Q Consensus       549 ld~L~~~L~~~gi~~~~LdGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAig  628 (911)
                      +++|+.+|...|+++.+++|+++.++|++++++|+++....++||+|+++||+||||++|++||+|||+|||+.+.||+|
T Consensus       429 ~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~g  508 (644)
T 1z3i_X          429 LDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMA  508 (644)
T ss_dssp             HHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHH
Confidence            99999999999999999999999999999999999977767799999999999999999999999999999999999999


Q ss_pred             hhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHhhccCCCchhhhhhhccc
Q 043990          629 RVWRDGQKKRVFIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHC  708 (911)
Q Consensus       629 R~~RiGQkk~V~VyrLi~~gTIEEkI~~rq~~K~~L~~~v~~~~~~~~~~~~~~~s~~eL~~Lf~~~~~~~~~t~d~~~c  708 (911)
                      |+||+||+++|+||+|+++|||||+|+++|..|+.|+..++++....    ...|+.+||++||++.+++.|+|||.++|
T Consensus       509 R~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~----~~~~~~~~l~~Lf~~~~~~~~~t~~~~~c  584 (644)
T 1z3i_X          509 RVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDV----ERHFSLGELRELFSLNEKTLSDTHDRFRC  584 (644)
T ss_dssp             TSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSC----CCSSCHHHHHHHTCCCSSCSCHHHHHHTC
T ss_pred             hhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCcchh----hcCCCHHHHHHHhCCCCCccchhhhhhhC
Confidence            99999999999999999999999999999999999999888765332    46899999999999999999999999999


Q ss_pred             cccccCCCCCCccCCCCCCCcCCCCCCccccccccccccccccccccccccccccCCCChhhcccCccCCCCCCCchHHH
Q 043990          709 TRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAIL  788 (911)
Q Consensus       709 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~h~~~~~~~~~~~~  788 (911)
                      .+|.+....      .+  ++                                 .+...++||++|+||.+..++||.+|
T Consensus       585 ~~c~~~~~~------~~--~~---------------------------------~~~~~~~~~~~w~~~~~~~~~~~~~~  623 (644)
T 1z3i_X          585 RRCVNGRQV------RP--PP---------------------------------DDSDCTCDLSNWHHCADKRGLRDPVL  623 (644)
T ss_dssp             SSEETTEEC------SC--CC---------------------------------TTCCTTSCGGGSEEESSSTTCSCHHH
T ss_pred             ccCCCCccc------CC--Ch---------------------------------hcccchhhhhhceeccccCCCCcHHH
Confidence            999864210      00  00                                 01124789999999999899999999


Q ss_pred             HhccCCceEEEEEeccCCe
Q 043990          789 QASAGDEVTFVFTNQVDGK  807 (911)
Q Consensus       789 ~~~~~~~~~~~f~~~~~~~  807 (911)
                      +++|.+.|||||+|+++..
T Consensus       624 ~~~~~~~~~~~~~~~~~~~  642 (644)
T 1z3i_X          624 QASWDAAVSFVFHQRSHED  642 (644)
T ss_dssp             HHHCSTTEEEEEEEESSCT
T ss_pred             HHhhcCCeEEEEecccccc
Confidence            9998889999999999875
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 911
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 1e-69
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 3e-48
d1z5za1244 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h 5e-32
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 5e-23
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 2e-16
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 1e-13
d2fz4a1206 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc 9e-06
d1rifa_282 c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 0.003
d1hv8a2155 c.37.1.19 (A:211-365) Putative DEAD box RNA helica 0.003
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

 Score =  232 bits (593), Expect = 1e-69
 Identities = 172/396 (43%), Positives = 212/396 (53%), Gaps = 57/396 (14%)

Query: 407 TNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKK 466
           T+ +LS +LP KI +VVCC LTPLQ ELY  F+       ++         L+ IT+LKK
Sbjct: 1   TSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKK 60

Query: 467 LCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLAR 526
           LCNHP LIY+   +G  G  G  D                         +LSGKM VL  
Sbjct: 61  LCNHPALIYEKCLTGEEGFDGALDLFPQNYSTK------------AVEPQLSGKMLVLDY 108

Query: 527 LLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPS 586
           +L   R  T D++VLVSNYTQTLDLF +LCR RRY Y+RLDGT SI KR K+V  FN+PS
Sbjct: 109 ILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPS 168

Query: 587 KNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLS 646
             EF+F+LSSKAGGCGLNLIG NRLV+FDPDWNPAND+QA ARVWRDGQKK  +IYR LS
Sbjct: 169 SPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLS 228

Query: 647 TGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENM 706
           TGTIEEK+ QRQ  K+ L   +  E+ D         S  +LR+LF+ ++   S+ H+  
Sbjct: 229 TGTIEEKILQRQAHKKALSSCVVDEEQDVER----HFSLGELRELFSLNEKTLSDTHDRF 284

Query: 707 HCTRCQNYDDGAESIGEGDETNSANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTP 766
            C RC N         + D                                         
Sbjct: 285 RCRRCVNGRQVRPPPDDSD----------------------------------------- 303

Query: 767 LEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFTN 802
              DL+NW H      + D +LQAS    V+FVF  
Sbjct: 304 CTCDLSNWHHCADKRGLRDPVLQASWDAAVSFVFHQ 339
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query911
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.87
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.82
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.8
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.8
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.78
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.77
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.74
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.71
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.67
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.66
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.64
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.58
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.57
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.56
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.5
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.34
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.26
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.25
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.06
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.01
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.0
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 98.99
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 98.95
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 98.92
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 98.89
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 98.89
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 98.86
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 98.84
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 98.82
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 98.81
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 98.78
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 98.77
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 98.71
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 98.67
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 98.62
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 98.48
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 98.44
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.26
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 98.25
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 97.5
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 95.88
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 95.7
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 95.63
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 94.52
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 92.46
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 91.91
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 91.3
d1c4oa1408 Nucleotide excision repair enzyme UvrB {Thermus th 87.04
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 86.68
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 85.05
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 84.84
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 84.74
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 81.73
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=100.00  E-value=1.6e-60  Score=529.20  Aligned_cols=344  Identities=50%  Similarity=0.829  Sum_probs=284.6

Q ss_pred             cHHHHhccCCCcEEEEEEecCCHHHHHHHHHHHHhHHHHHHhhhhhhHhhHHHHHHHHHHHhcChhhhHhhhhcCCCCCC
Q 043990          407 TNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAISEETKQSKILAYITALKKLCNHPKLIYDTIKSGNPGTT  486 (911)
Q Consensus       407 tk~~v~~~LP~k~~~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~l~~l~~LrklcnhP~Ll~~~~~~~~~~~~  486 (911)
                      |.+.+.++||||++++++|+||+.|+++|+.++.................++..+++|||+||||.|+........... 
T Consensus         1 t~~vl~k~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~~~~~-   79 (346)
T d1z3ix1           1 TSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGF-   79 (346)
T ss_dssp             CGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTC-
T ss_pred             ChhhhhccCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHhCCHHHhhhhhccccccc-
Confidence            3455667999999999999999999999999876432222222223345789999999999999999987655443322 


Q ss_pred             CcchhhhcCCcccccCCCCCCCCCCCcccccchHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHcCCCEEEE
Q 043990          487 GFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRL  566 (911)
Q Consensus       487 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~l~~~~~~KVIIFSq~~~~ld~L~~~L~~~gi~~~~L  566 (911)
                        ......++....         ........|+|+.+|.++|..+...+++||||||+|+.++++|+.+|...|++|.++
T Consensus        80 --~~~~~~~~~~~~---------~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l  148 (346)
T d1z3ix1          80 --DGALDLFPQNYS---------TKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRL  148 (346)
T ss_dssp             --TTGGGTSCSSCC---------SSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             --cchhhhcccccc---------ccccccccCHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhcccccc
Confidence              222222222211         112335679999999999998876678999999999999999999999999999999


Q ss_pred             eCCCCHHHHHHHHHhhcCCCCCceEEEEecCCcccccCCCCCCEEEEeCCCCCcchHHHHHHhhhhcCCcccEEEEEEEe
Q 043990          567 DGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLS  646 (911)
Q Consensus       567 dGsts~~~R~~iv~~Fn~~~~~~~v~LlStkagg~GLNL~~An~VIl~Dp~WNPa~~~QAigR~~RiGQkk~V~VyrLi~  646 (911)
                      +|+|+..+|++++++||++....+|||+|+++||+||||++|++||+|||+|||+.+.||+||+||+||+++|+||||++
T Consensus       149 ~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~  228 (346)
T d1z3ix1         149 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLS  228 (346)
T ss_dssp             CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEE
T ss_pred             ccchhHHHHHHHHHhhhcccccceeeeecchhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEe
Confidence            99999999999999999877777899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHhhccCCCchhhhhhhccccccccCCCCCCccCCCCC
Q 043990          647 TGTIEEKVYQRQMSKEGLQKVIQQEQTDSSATQGNFLSTEDLRDLFTFHDDVRSEIHENMHCTRCQNYDDGAESIGEGDE  726 (911)
Q Consensus       647 ~gTIEEkI~~rq~~K~~L~~~v~~~~~~~~~~~~~~~s~~eL~~Lf~~~~~~~~~t~d~~~c~~c~~~~~~~~~~~~~~~  726 (911)
                      +|||||+|+++|..|+.|+..++++..+.    .+.||.++|++||++.+++.|+|||.+.|.+|......    .    
T Consensus       229 ~~TiEe~i~~~~~~K~~l~~~v~~~~~~~----~~~~~~~~l~~lf~~~~~~~~~t~~~~~~~~~~~~~~~----~----  296 (346)
T d1z3ix1         229 TGTIEEKILQRQAHKKALSSCVVDEEQDV----ERHFSLGELRELFSLNEKTLSDTHDRFRCRRCVNGRQV----R----  296 (346)
T ss_dssp             TTSHHHHHHHHHHHHHHTSCCCCSCSSSC----CCSSCHHHHHHHTCCCSSCSCHHHHHHTCSSEETTEEC----S----
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCchhh----hhcCCHHHHHHHhcCCCcccccchhhhccccccccccc----c----
Confidence            99999999999999999999888765443    46799999999999999999999999999977643200    0    


Q ss_pred             CCcCCCCCCccccccccccccccccccccccccccccCCCChhhcccCccCCCCCCCchHHHHhccCCceEEEEEeccCC
Q 043990          727 TNSANKNDQSDQEVTDIGGFAGLAGCLHKLKSSEKQLGTPLEEDLNNWGHHFYSMSVPDAILQASAGDEVTFVFTNQVDG  806 (911)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~h~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  806 (911)
                       + ...                               ....++||+.|.||.+...++|++|+++|...|||||+|.+|.
T Consensus       297 -~-~~~-------------------------------~~~~~~~l~~~~~~~~~~~~~d~~l~~~~~~~~sfv~~~~~~~  343 (346)
T d1z3ix1         297 -P-PPD-------------------------------DSDCTCDLSNWHHCADKRGLRDPVLQASWDAAVSFVFHQRSHE  343 (346)
T ss_dssp             -C-CCT-------------------------------TCCTTSCGGGSEEESSSTTCSCHHHHHHCSTTEEEEEEEESSC
T ss_pred             -C-Ccc-------------------------------cccchhhHHHHHhhcCcccCCCHHHHhcccCCceEEEeccCcc
Confidence             0 000                               0123578999999999899999999999988999999999986


Q ss_pred             e
Q 043990          807 K  807 (911)
Q Consensus       807 ~  807 (911)
                      .
T Consensus       344 ~  344 (346)
T d1z3ix1         344 D  344 (346)
T ss_dssp             T
T ss_pred             c
Confidence            4
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure