Citrus Sinensis ID: 044037

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MSRHTPVGSDHERDPETRLYNPYAELNLPAQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYVPI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccHHHHcccccccHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
msrhtpvgsdherdpetrlynpyaelnlpaqnlyklptnpeflfseeSIHQRrswgenltfytgTAYLAGSVSGAAIGLFSAFksmekgdtLKLKINRVLnssghsgrswgnRVGVIGLIYAGmesgvvaatdrddvwssvaaglgTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYVPI
Flexible Loop (DISEMBL)
msrhtpvgsdherdpetRLYNPYAELNLPAQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLnssghsgrswgnRVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQavkryvpi
Low Complexity Region (SEG)
MSRHTPVGSDHERDPETRLYNPYAELNLPAQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSaavagaigglaagaavaakqavKRYVPI
Disordered region (IsUnstruct)
*******************YNPYAELNLPAQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAV******
Disordered Region (DISOPRED)
**********************YAELNLPAQNLY*******************SWGENLTFYTGTAYLAGSVSGAAIGLFSAF***************VLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYVPI
Disordered Region (DISEMBL)
**************PETRLYNPYAELNLPAQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYVPI
Disordered Region (DISPRO)
******************LYNPYAELNLPAQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYVPI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSRHTPVGSDHERDPETRLYNPYAELNLPAQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYVPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q38820	188	Mitochondrial import inne	yes	no	0.957	0.952	0.741	7e-68
Q9LNQ1	187	Mitochondrial import inne	no	no	0.957	0.957	0.734	1e-66
Q9S837	188	Mitochondrial import inne	no	no	0.946	0.941	0.528	1e-39
Q9USM7	210	Mitochondrial import inne	yes	no	0.925	0.823	0.302	3e-13
P32897	222	Mitochondrial import inne	yes	no	0.679	0.572	0.290	3e-08
Q5XH94	209	Mitochondrial import inne	yes	no	0.737	0.660	0.301	1e-05
Q6INU6	209	Mitochondrial import inne	N/A	no	0.743	0.665	0.285	5e-05
Q7T2P6	208	Mitochondrial import inne	yes	no	0.705	0.634	0.266	0.0009

>sp|Q38820|TI232_ARATH Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis thaliana GN=TIM23-2 PE=1 SV=1

 Score =  256 bits (653), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 135/182 (74%), Positives = 157/182 (86%), Gaps = 3/182 (1%)

Query: 9   SDHERDPETRLYNPYAELNLP---AQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGT 65
           SDH  D  TRLYNPY    +P   +Q LYKLPT+PEFLF+EE++ QRRSWGENLTFYTGT
Sbjct: 7   SDHGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGT 66

Query: 66  AYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGME 125
           AYL GSV+GA++G+ +  KS E GDT KLKINR+LNSSG +GR+WGNR+G+IGL+YAG+E
Sbjct: 67  AYLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIE 126

Query: 126 SGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYV 185
           SG+VAATDRDDVW+SV AGLGTGAVCRAARG+RSAAVAGA+GGLAAGA VA KQ VKRYV
Sbjct: 127 SGIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYV 186

Query: 186 PI 187
           PI
Sbjct: 187 PI 188

Essential component of the TIM17:23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Links the inner and outer membranes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNQ1|TI231_ARATH Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana GN=TIM23-1 PE=2 SV=1

 Score =  252 bits (643), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 133/181 (73%), Positives = 152/181 (83%), Gaps = 2/181 (1%)

Query: 9   SDHERDPETRLYNPYAELNLP--AQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGTA 66
           SDHE D  TRLY+PY    +P  +Q LYKLPT+PEFLF+EES+ QRRSWGENLTFYTGT 
Sbjct: 7   SDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGTG 66

Query: 67  YLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMES 126
           YLAGSV+GA+ G+FS  KS E GDT KLKINR+LNSSG +GR+WGNRVG++GLIYAG+ES
Sbjct: 67  YLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIES 126

Query: 127 GVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYVP 186
           GVVA TD+DDVW+SV AGLGTGAV RAARG+RSAAVAGA GG+AAGA VA KQ  KRY  
Sbjct: 127 GVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYAH 186

Query: 187 I 187
           I
Sbjct: 187 I 187

Essential component of the TIM17:23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Links the inner and outer membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S837|TI233_ARATH Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis thaliana GN=TIM23-3 PE=2 SV=1

 Score =  162 bits (410), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/178 (52%), Positives = 127/178 (71%), Gaps = 1/178 (0%)

Query: 11  HERDPETRLYNPYAELNLPAQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGTAYLAG 70
           H++  + R YNPY ++NLP + LY+LPT+PEFLF EE+  +R +WGENLTF+TG  Y  G
Sbjct: 11  HQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTGWGYCTG 70

Query: 71  SVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVA 130
           SV GA  G  +  ++ E+G++LK++ NR+LNS G   R  GN +G +GL++A MESGV  
Sbjct: 71  SVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAMESGVTY 130

Query: 131 ATDRDD-VWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYVPI 187
             D DD   ++V AGL TG + RAA G RSA VAGA+GG+AA AAVA ++ VKR+VPI
Sbjct: 131 MRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKRFVPI 188

Essential component of the TIM17:23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Links the inner and outer membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9USM7|TIM23_SCHPO Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim23 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 2/175 (1%)

Query: 9   SDHERDPETRLYNPYAELNLPAQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGTAYL 68
           S  E DP     +P A+L+ P   L         L  +      R W ++L + TGT+YL
Sbjct: 35  SGSEFDPAK--LHPLADLDKPLDYLLIEEDALSTLPGDSMAIPSRGWQDDLCYGTGTSYL 92

Query: 69  AGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGV 128
           +G   G   GL    K  +   + +L++N +LN     G   GN +GV+ L+Y G+ S +
Sbjct: 93  SGLAIGGLWGLNEGMKKTKDITSTRLRLNGILNGVTRRGPFVGNSLGVLALVYNGINSLI 152

Query: 129 VAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKR 183
                +    +SVAAG  TGA+ ++ RG+R+ A++ ++   AAG    AK++  +
Sbjct: 153 GYKRQKHGWENSVAAGALTGALYKSTRGLRAMAISSSLVATAAGIWTLAKRSFTK 207

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P32897|TIM23_YEAST Mitochondrial import inner membrane translocase subunit TIM23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIM23 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 4/131 (3%)

Query: 53  RSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGN 112
           R W ++L + TG  YL G   G   G+    +++      KL++N VLN     G   GN
Sbjct: 91  RGWTDDLCYGTGAVYLLGLGIGGFSGMMQGLQNIPPNSPGKLQLNTVLNHITKRGPFLGN 150

Query: 113 RVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAG 172
             G++ L Y  + S + A   + D   S+ AG  TGA+ ++++G++    + A+      
Sbjct: 151 NAGILALSYNIINSTIDALRGKHDTAGSIGAGALTGALFKSSKGLKPMGYSSAM----VA 206

Query: 173 AAVAAKQAVKR 183
           AA A   +VK+
Sbjct: 207 AACAVWCSVKK 217

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q5XH94|TIM23_XENTR Mitochondrial import inner membrane translocase subunit Tim23 OS=Xenopus tropicalis GN=timm23 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 8/146 (5%)

Query: 34  YKLPTNPEFLFSEESIHQRRSWGENLTFYT-GTAYLAGSVSGAAIGLFSAFKSMEKGDTL 92
           Y +  N EF+    +   R  +   L F+T G   ++G+  GA  GL   FK  +     
Sbjct: 52  YLVQDNDEFILPTGANKTRGRF--ELAFFTIGGCCMSGAAFGAVNGLRLGFKETQNMAWS 109

Query: 93  KLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDR--DDVWSSVAAGLGTGAV 150
           K K  ++LN     G  W N +G + L+Y+    GV+    R  +D  +++AAG  TG +
Sbjct: 110 KPKNVQILNMVTRQGALWANTLGSLALLYSAF--GVIIEKTRGAEDDLNTIAAGTMTGML 167

Query: 151 CRAARGIRSAAVAGAIGGLAAGAAVA 176
            ++  G+R  A  G + GLA  +A A
Sbjct: 168 YKSTGGLRGVA-RGGLAGLALTSAFA 192

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane (By similarity). Plays an essential role in early embryonic development.

Xenopus tropicalis (taxid: 8364)

>sp|Q6INU6|TIM23_XENLA Mitochondrial import inner membrane translocase subunit Tim23 OS=Xenopus laevis GN=timm23 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 8/147 (5%)

Query: 33  LYKLPTNPEFLFSEESIHQRRSWGENLTFYT-GTAYLAGSVSGAAIGLFSAFKSMEKGDT 91
           +Y +    EF+    +   R  +   L F+T G   ++G+  GA  GL   FK  +    
Sbjct: 51  MYLVQDTDEFILPTGANKTRGRF--ELAFFTIGGCCISGAAFGALNGLKLGFKETQNMPW 108

Query: 92  LKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDR--DDVWSSVAAGLGTGA 149
            K K  ++LN     G  W N +G + L+Y+    GV+    R  +D  +++AAG  TG 
Sbjct: 109 SKPKNVQILNMVTRQGALWANTLGSLALLYSAF--GVIVEKTRGAEDDLNTIAAGTMTGM 166

Query: 150 VCRAARGIRSAAVAGAIGGLAAGAAVA 176
           + ++  G+R  A  G + GLA  +  A
Sbjct: 167 LYKSTGGLRGVA-RGGLAGLALASTFA 192

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane (By similarity). Plays an essential role in early embryonic development.

Xenopus laevis (taxid: 8355)

>sp|Q7T2P6|TIM23_DANRE Mitochondrial import inner membrane translocase subunit Tim23 OS=Danio rerio GN=timm23 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 3/135 (2%)

Query: 34  YKLPTNPEFLFSEESIHQRRSWGENLTFYT-GTAYLAGSVSGAAIGLFSAFKSMEKGDTL 92
           Y +    EF+    +   R  +   L F+T G   + G+  G   GL             
Sbjct: 52  YLIQDTDEFILPTGANKTRGRF--ELAFFTIGGCCITGAAFGTLNGLRMGLSETRDMPWS 109

Query: 93  KLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCR 152
           K +  ++LN     G SW N +G + L+Y+     +  A   +D  ++VAAG  TG V +
Sbjct: 110 KPRNVQILNMVTRQGASWANTLGSVALLYSVFGVAIEKARGAEDDLNTVAAGTLTGMVFK 169

Query: 153 AARGIRSAAVAGAIG 167
           +  G++  A  G IG
Sbjct: 170 STGGLKGVARGGLIG 184

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane (By similarity). Plays an essential role in early embryonic development.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
224128546	187	predicted protein [Populus trichocarpa]	0.957	0.957	0.760	4e-68
255560713	188	Mitochondrial import inner membrane tran	0.957	0.952	0.743	4e-67
297839135	188	hypothetical protein ARALYDRAFT_476412 [	0.957	0.952	0.747	2e-66
15218593	188	translocase inner membrane subunit 23-2	0.957	0.952	0.741	3e-66
225442227	183	PREDICTED: mitochondrial import inner me	0.978	1.0	0.652	3e-65
18394498	187	translocase of inner mitochondrial membr	0.957	0.957	0.734	6e-65
224070720	185	predicted protein [Populus trichocarpa]	0.957	0.967	0.747	2e-64
13641346	187	translocase of inner mitochondrial membr	0.957	0.957	0.734	2e-64
356550408	188	PREDICTED: mitochondrial import inner me	0.994	0.989	0.671	2e-59
116784156	189	unknown [Picea sitchensis]	0.909	0.899	0.645	2e-59

>gi|224128546|ref|XP_002329030.1| predicted protein [Populus trichocarpa] gi|222839701|gb|EEE78024.1| predicted protein [Populus trichocarpa]

 Score =  262 bits (670), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 140/184 (76%), Positives = 160/184 (86%), Gaps = 5/184 (2%)

Query: 9   SDHERDPE-----TRLYNPYAELNLPAQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYT 63
           SD+  DP      TRLYNPY +L+LP+Q LY LPT+PE+LF+EES+HQRRSWGENLTFYT
Sbjct: 4   SDNNSDPNQPKPGTRLYNPYQDLHLPSQTLYHLPTSPEYLFTEESLHQRRSWGENLTFYT 63

Query: 64  GTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAG 123
           G+AYL+ S++G A G FSAF+S E  DTLKLK+NR+LNSSGHSGR WGNRVGV+GLIYAG
Sbjct: 64  GSAYLSASIAGGAAGFFSAFRSFEPTDTLKLKVNRILNSSGHSGRVWGNRVGVVGLIYAG 123

Query: 124 MESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKR 183
           MESG+VA TDRDDVWSSVAAGLGTGAVCRAARG+RSAAVAGA+GGLAAGA VA KQA+KR
Sbjct: 124 MESGIVAITDRDDVWSSVAAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQALKR 183

Query: 184 YVPI 187
           Y  I
Sbjct: 184 YAMI 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560713|ref|XP_002521370.1| Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis] gi|223539448|gb|EEF41038.1| Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 136/183 (74%), Positives = 157/183 (85%), Gaps = 4/183 (2%)

Query: 9   SDHE----RDPETRLYNPYAELNLPAQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTG 64
           SDH+     +P TRLYNPY +LNLP Q LY+LPT+PEFLF+EES+ QRRSWGENLTFYTG
Sbjct: 6   SDHDTNRTENPNTRLYNPYQDLNLPIQTLYQLPTSPEFLFTEESLRQRRSWGENLTFYTG 65

Query: 65  TAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGM 124
           +AYL+ S+ GA++G FSA KS E  DTLKLK+NR+LNSSGHSGR WGNR+G++GLIYA  
Sbjct: 66  SAYLSASIGGASVGFFSALKSFEPTDTLKLKVNRILNSSGHSGRVWGNRIGIVGLIYAMT 125

Query: 125 ESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRY 184
           ESGVVA TDRDDVW+SVAAGLGTGAVCRAARG+RSAAVAGA+GGLAAGA VA KQ +KRY
Sbjct: 126 ESGVVAVTDRDDVWTSVAAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQMMKRY 185

Query: 185 VPI 187
             I
Sbjct: 186 AMI 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839135|ref|XP_002887449.1| hypothetical protein ARALYDRAFT_476412 [Arabidopsis lyrata subsp. lyrata] gi|297333290|gb|EFH63708.1| hypothetical protein ARALYDRAFT_476412 [Arabidopsis lyrata subsp. lyrata]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 136/182 (74%), Positives = 157/182 (86%), Gaps = 3/182 (1%)

Query: 9   SDHERDPETRLYNPYAELNLP---AQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGT 65
           SDH  D  TRLYNPY    +P   +Q LYKLPT+PEFLF+EES+ QRRSWGENLTFYTGT
Sbjct: 7   SDHGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEESLRQRRSWGENLTFYTGT 66

Query: 66  AYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGME 125
           AYL GSV+GA++G+ +  KS E GDT KLKINR+LNSSG +GR+WGNR+G+IGL+YAG+E
Sbjct: 67  AYLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIE 126

Query: 126 SGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYV 185
           SGVVAATDRDDVW+SV AGLGTGAVCRAARG+RSAAVAGA+GGLAAGA VA KQ V+RYV
Sbjct: 127 SGVVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVRRYV 186

Query: 186 PI 187
           PI
Sbjct: 187 PI 188

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218593|ref|NP_177419.1| translocase inner membrane subunit 23-2 [Arabidopsis thaliana] gi|75101864|sp|Q38820.1|TI232_ARATH RecName: Full=Mitochondrial import inner membrane translocase subunit TIM23-2 gi|12323775|gb|AAG51855.1|AC010926_18 inner mitochondrial membrane protein; 26940-26374 [Arabidopsis thaliana] gi|603056|gb|AAA57314.1| inner mitochondrial membrane protein [Arabidopsis thaliana] gi|14596209|gb|AAK68832.1| inner mitochondrial membrane protein [Arabidopsis thaliana] gi|18377494|gb|AAL66913.1| inner mitochondrial membrane protein [Arabidopsis thaliana] gi|21594303|gb|AAM65992.1| inner mitochondrial membrane protein [Arabidopsis thaliana] gi|38678778|gb|AAR26374.1| mitochondrial inner membrane translocase TM23-2 [Arabidopsis thaliana] gi|332197247|gb|AEE35368.1| translocase inner membrane subunit 23-2 [Arabidopsis thaliana]

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 135/182 (74%), Positives = 157/182 (86%), Gaps = 3/182 (1%)

Query: 9   SDHERDPETRLYNPYAELNLP---AQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGT 65
           SDH  D  TRLYNPY    +P   +Q LYKLPT+PEFLF+EE++ QRRSWGENLTFYTGT
Sbjct: 7   SDHGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGT 66

Query: 66  AYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGME 125
           AYL GSV+GA++G+ +  KS E GDT KLKINR+LNSSG +GR+WGNR+G+IGL+YAG+E
Sbjct: 67  AYLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIE 126

Query: 126 SGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYV 185
           SG+VAATDRDDVW+SV AGLGTGAVCRAARG+RSAAVAGA+GGLAAGA VA KQ VKRYV
Sbjct: 127 SGIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYV 186

Query: 186 PI 187
           PI
Sbjct: 187 PI 188

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442227|ref|XP_002278010.1| PREDICTED: mitochondrial import inner membrane translocase subunit tim23-like [Vitis vinifera]

 Score =  253 bits (645), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/187 (65%), Positives = 148/187 (79%), Gaps = 4/187 (2%)

Query: 1   MSRHTPVGSDHERDPETRLYNPYAELNLPAQNLYKLPTNPEFLFSEESIHQRRSWGENLT 60
           M + T    +  R    RLYNPY +L +P QN+YKLPT+PEFLF EES+ QRRSWGENLT
Sbjct: 1   MDQRTSQNDNDNR----RLYNPYQDLQIPIQNIYKLPTSPEFLFQEESVAQRRSWGENLT 56

Query: 61  FYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLI 120
           +YTG  YL+G++SGAA GL    K+ E GDT+KL+INR+LN+SGH+GR +GNR GVIGL+
Sbjct: 57  YYTGIGYLSGALSGAAKGLVDGVKASEPGDTVKLRINRILNASGHAGRKFGNRAGVIGLM 116

Query: 121 YAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQA 180
           YAG+ESG+VA  D DDV +SV AGLGTGA+ RAA G+RSAAVAGAIGG+  GAAV AKQ 
Sbjct: 117 YAGLESGIVAVRDTDDVVNSVVAGLGTGALYRAAAGVRSAAVAGAIGGVVVGAAVTAKQV 176

Query: 181 VKRYVPI 187
           +KRYVPI
Sbjct: 177 LKRYVPI 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394498|ref|NP_564028.1| translocase of inner mitochondrial membrane 23 [Arabidopsis thaliana] gi|75175255|sp|Q9LNQ1.1|TI231_ARATH RecName: Full=Mitochondrial import inner membrane translocase subunit TIM23-1 gi|8778460|gb|AAF79468.1|AC022492_12 F1L3.24 [Arabidopsis thaliana] gi|15010570|gb|AAK73944.1| At1g17530/F11A6.4 [Arabidopsis thaliana] gi|20147387|gb|AAM10403.1| At1g17530/F11A6.4 [Arabidopsis thaliana] gi|38678776|gb|AAR26373.1| mitochondrial inner membrane translocase TM23-1 [Arabidopsis thaliana] gi|332191481|gb|AEE29602.1| translocase of inner mitochondrial membrane 23 [Arabidopsis thaliana]

 Score =  252 bits (643), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 133/181 (73%), Positives = 152/181 (83%), Gaps = 2/181 (1%)

Query: 9   SDHERDPETRLYNPYAELNLP--AQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGTA 66
           SDHE D  TRLY+PY    +P  +Q LYKLPT+PEFLF+EES+ QRRSWGENLTFYTGT 
Sbjct: 7   SDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGTG 66

Query: 67  YLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMES 126
           YLAGSV+GA+ G+FS  KS E GDT KLKINR+LNSSG +GR+WGNRVG++GLIYAG+ES
Sbjct: 67  YLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIES 126

Query: 127 GVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYVP 186
           GVVA TD+DDVW+SV AGLGTGAV RAARG+RSAAVAGA GG+AAGA VA KQ  KRY  
Sbjct: 127 GVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYAH 186

Query: 187 I 187
           I
Sbjct: 187 I 187

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070720|ref|XP_002303213.1| predicted protein [Populus trichocarpa] gi|222840645|gb|EEE78192.1| predicted protein [Populus trichocarpa]

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 136/182 (74%), Positives = 153/182 (84%), Gaps = 3/182 (1%)

Query: 9   SDHERD---PETRLYNPYAELNLPAQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGT 65
           SD   D   P TRLYNPY +L+LP+Q LY LPT+PEFLF+EES+ QRRSWGENLTFYTG+
Sbjct: 4   SDSNSDQPSPATRLYNPYQDLHLPSQTLYHLPTSPEFLFTEESLRQRRSWGENLTFYTGS 63

Query: 66  AYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGME 125
           AYL  S++G   G FSA +S E  DTLKLK+NR+LNSSGHSGR WGNRVG+ GLIYA ME
Sbjct: 64  AYLTASLAGGGSGFFSALRSFEPTDTLKLKVNRILNSSGHSGRIWGNRVGIAGLIYAMME 123

Query: 126 SGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYV 185
           SG+VA TDRDDVWSSVAAGLGTGAVCRAARG+RSAAVAGA+GGLAAGA VA KQA+KRY 
Sbjct: 124 SGIVAVTDRDDVWSSVAAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQALKRYA 183

Query: 186 PI 187
            I
Sbjct: 184 MI 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13641346|gb|AAK31587.1| translocase of inner mitochondrial membrane TIM23 [Arabidopsis thaliana]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 133/181 (73%), Positives = 151/181 (83%), Gaps = 2/181 (1%)

Query: 9   SDHERDPETRLYNPYAELNLP--AQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGTA 66
           SDHE D  TRLY+PY    +P  +Q LYKLPT+PEFLF+EES+ QRRSWGENLTFYTGT 
Sbjct: 7   SDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGTG 66

Query: 67  YLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMES 126
           YLAGSV+GA+ G+FS  KS E GDT KLKINR+LNSSG +GR+WGNRVG++GLIYAG+ES
Sbjct: 67  YLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIES 126

Query: 127 GVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYVP 186
           GVVA TD+DDVW+SV AGLGTGAV RAARG+RSAAVAGA GG AAGA VA KQ  KRY  
Sbjct: 127 GVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGSAAGAVVAGKQVFKRYAH 186

Query: 187 I 187
           I
Sbjct: 187 I 187

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550408|ref|XP_003543579.1| PREDICTED: mitochondrial import inner membrane translocase subunit tim23-like [Glycine max]

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/189 (67%), Positives = 153/189 (80%), Gaps = 3/189 (1%)

Query: 1   MSRHTPVGSDHERDPET--RLYNPYAELNLPAQNLYKLPTNPEFLFSEESIHQRRSWGEN 58
           M+  TP   D   DP+T  RLYNPY +L +P +NLY+LPT+PE+LF EE+  +RRSWGEN
Sbjct: 1   MAYQTP-DQDSGSDPKTPTRLYNPYKDLEVPIRNLYQLPTSPEYLFVEEARRKRRSWGEN 59

Query: 59  LTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIG 118
           LTFYTG  YL+G+V GAA GL    KS E GDT KL++NRVLNSSGH+GR+WGNR+GVIG
Sbjct: 60  LTFYTGCGYLSGAVGGAASGLVGGVKSFESGDTAKLRVNRVLNSSGHAGRAWGNRLGVIG 119

Query: 119 LIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAK 178
           L+YAG+ESG+ A  D DDVW+SVAAGLGTGA+ RAARG+RSAAVAGA+GG+  G AV AK
Sbjct: 120 LLYAGIESGIEATRDTDDVWNSVAAGLGTGALYRAARGVRSAAVAGAVGGVVVGVAVTAK 179

Query: 179 QAVKRYVPI 187
           QA+KRYVPI
Sbjct: 180 QALKRYVPI 188

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116784156|gb|ABK23235.1| unknown [Picea sitchensis]

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 113/175 (64%), Positives = 142/175 (81%), Gaps = 5/175 (2%)

Query: 18  RLYNPYAELN-----LPAQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGTAYLAGSV 72
           RLYNPY +L+      P QN+Y++PT+PEFLF EE+  QRRSWGEN+T+YTG  YL G+V
Sbjct: 15  RLYNPYGDLHGAIDYRPIQNIYQIPTSPEFLFQEEAAVQRRSWGENITYYTGCGYLLGAV 74

Query: 73  SGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAAT 132
           SGA++GL    K+ E GD++KL++NRVLN+SGH+GR +GNR+GVIGL+YAG+ESG+VA  
Sbjct: 75  SGASVGLVEGLKAREPGDSMKLRVNRVLNASGHTGRKFGNRLGVIGLLYAGLESGIVAGR 134

Query: 133 DRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYVPI 187
             DD+ +SV AGLGTGA+ +AA G RSAAVAGAIGGLA GA VA KQA+KRYVPI
Sbjct: 135 GTDDILNSVCAGLGTGALYKAAAGPRSAAVAGAIGGLAVGALVAGKQALKRYVPI 189

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
TAIR|locus:2030260	188	TIM23-2 "translocase inner mem	0.957	0.952	0.642	2.7e-61
TAIR|locus:2007893	187	TIM23-1 "AT1G17530" [Arabidops	0.957	0.957	0.646	1.3e-59
TAIR|locus:2084913	188	TIM23-3 "translocase inner mem	0.946	0.941	0.449	4.9e-37
POMBASE|SPCC16A11.09c	210	tim23 "TIM23 translocase compl	0.791	0.704	0.322	1e-13
ASPGD|ASPL0000008496	205	AN6348 [Emericella nidulans (t	0.770	0.702	0.303	1.3e-13
CGD|CAL0003881	218	TIM23 [Candida albicans (taxid	0.566	0.486	0.311	7.4e-11
UNIPROTKB|Q59YG5	218	TIM23 "Putative uncharacterize	0.566	0.486	0.311	7.4e-11
SGD|S000005300	222	TIM23 "Essential component of	0.764	0.644	0.265	1.5e-10
GENEDB_PFALCIPARUM|PF13_0300	167	PF13_0300 "mitochondrial inner	0.534	0.598	0.323	2.5e-10
UNIPROTKB|Q8IDE0	167	PF13_0300 "Mitochondrial inner	0.534	0.598	0.323	2.5e-10

TAIR|locus:2030260 TIM23-2 "translocase inner membrane subunit 23-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 117/182 (64%), Positives = 138/182 (75%)

Query:     9 SDHERDPETRLYNPYAELNLP---AQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGT 65
             SDH  D  TRLYNPY    +P   +Q LYKLPT+PEFLF+EE++ QRRSWGENLTFYTGT
Sbjct:     7 SDHGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGT 66

Query:    66 AYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGME 125
             AYL GSV+GA++G+ +  KS E GDT KLKINR+LNSSG +GR+WGNR+G+IGL+YAG+E
Sbjct:    67 AYLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIE 126

Query:   126 SGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSXXXXXXXXXXXXXXXXXXXXXXKRYV 185
             SG+VAATDRDDVW+SV AGLGTGAVCRAARG+RS                      KRYV
Sbjct:   127 SGIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYV 186

Query:   186 PI 187
             PI
Sbjct:   187 PI 188

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA;ISS

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2007893 TIM23-1 "AT1G17530" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 117/181 (64%), Positives = 135/181 (74%)

Query:     9 SDHERDPETRLYNPYAELNLP--AQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGTA 66
             SDHE D  TRLY+PY    +P  +Q LYKLPT+PEFLF+EES+ QRRSWGENLTFYTGT 
Sbjct:     7 SDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGTG 66

Query:    67 YLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMES 126
             YLAGSV+GA+ G+FS  KS E GDT KLKINR+LNSSG +GR+WGNRVG++GLIYAG+ES
Sbjct:    67 YLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIES 126

Query:   127 GVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSXXXXXXXXXXXXXXXXXXXXXXKRYVP 186
             GVVA TD+DDVW+SV AGLGTGAV RAARG+RS                      KRY  
Sbjct:   127 GVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYAH 186

Query:   187 I 187
             I
Sbjct:   187 I 187

GO:0005622 "intracellular" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS;TAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA;ISS;TAS

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2084913 TIM23-3 "translocase inner membrane subunit 23-3" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 80/178 (44%), Positives = 109/178 (61%)

Query:    11 HERDPETRLYNPYAELNLPAQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGTAYLAG 70
             H++  + R YNPY ++NLP + LY+LPT+PEFLF EE+  +R +WGENLTF+TG  Y  G
Sbjct:    11 HQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTGWGYCTG 70

Query:    71 SVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVA 130
             SV GA  G  +  ++ E+G++LK++ NR+LNS G   R  GN +G +GL++A MESGV  
Sbjct:    71 SVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAMESGVTY 130

Query:   131 ATDRDD-VWSSVAAGLGTGAVCRAARGIRSXXXXXXXXXXXXXXXXXXXXXXKRYVPI 187
               D DD   ++V AGL TG + RAA G RS                      KR+VPI
Sbjct:   131 MRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKRFVPI 188

GO:0005739 "mitochondrion" evidence=ISM

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

POMBASE|SPCC16A11.09c tim23 "TIM23 translocase complex subunit Tim23 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 49/152 (32%), Positives = 78/152 (51%)

Query:     9 SDHERDPETRLYNPYAELNLPAQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGTAYL 68
             S  E DP  +L+ P A+L+ P   L         L  +      R W ++L + TGT+YL
Sbjct:    35 SGSEFDP-AKLH-PLADLDKPLDYLLIEEDALSTLPGDSMAIPSRGWQDDLCYGTGTSYL 92

Query:    69 AGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGV 128
             +G   G   GL    K  +   + +L++N +LN     G   GN +GV+ L+Y G+ S +
Sbjct:    93 SGLAIGGLWGLNEGMKKTKDITSTRLRLNGILNGVTRRGPFVGNSLGVLALVYNGINS-L 151

Query:   129 VAATDRDDVW-SSVAAGLGTGAVCRAARGIRS 159
             +    +   W +SVAAG  TGA+ ++ RG+R+
Sbjct:   152 IGYKRQKHGWENSVAAGALTGALYKSTRGLRA 183

GO:0005739 "mitochondrion" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISO

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=ISO

ASPGD|ASPL0000008496 AN6348 [Emericella nidulans (taxid:162425)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 44/145 (30%), Positives = 70/145 (48%)

Query:    15 PETRLYNPYAELNLPAQNLYKLPTNP-EFLFSEESIHQRRSWGENLTFYTGTAYLAGSVS 73
             P+    +P A LN    +   L  +  + L   +S+   R W ++L + TGT Y+     
Sbjct:    37 PDPSQLHPLAGLNQDTLDYITLEDSALDQLPGSQSVLPSRGWSDDLCYGTGTTYVTALAI 96

Query:    74 GAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATD 133
             G A GL    K        K+++N VLNS    G   GN  GV+ ++Y G+ S    A  
Sbjct:    97 GGAWGLAEGLKRTPVTAPPKIRLNGVLNSITRRGPFLGNSAGVVAMVYNGLNSFAGYARG 156

Query:   134 RDDVWSSVAAGLGTGAVCRAARGIR 158
             + D  +S+AAG  +G V ++ RG++
Sbjct:   157 KHDAANSIAAGAVSGMVFKSTRGLK 181

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0030943 "mitochondrion targeting sequence binding" evidence=IEA

GO:0015266 "protein channel activity" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

CGD|CAL0003881 TIM23 [Candida albicans (taxid:5476)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 33/106 (31%), Positives = 56/106 (52%)

Query:    53 RSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGN 112
             RSW ++L + TG  YL G   G   G     K++ +    K+K+N +LN+    G   GN
Sbjct:    88 RSWTDDLCYGTGAVYLLGLGIGGLYGFQQGIKTLPESAPSKVKLNHILNNITKRGPFLGN 147

Query:   113 RVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIR 158
               GV+ L Y  ++S +    ++ D  +SV AG   GA+ +++ G++
Sbjct:   148 SAGVLALTYNLIDSTIDGIREKHDDLNSVTAGALAGALFKSSAGLK 193

GO:0005886 "plasma membrane" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0030943 "mitochondrion targeting sequence binding" evidence=IEA

GO:0015266 "protein channel activity" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

UNIPROTKB|Q59YG5 TIM23 "Putative uncharacterized protein TIM23" [Candida albicans SC5314 (taxid:237561)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 33/106 (31%), Positives = 56/106 (52%)

Query:    53 RSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGN 112
             RSW ++L + TG  YL G   G   G     K++ +    K+K+N +LN+    G   GN
Sbjct:    88 RSWTDDLCYGTGAVYLLGLGIGGLYGFQQGIKTLPESAPSKVKLNHILNNITKRGPFLGN 147

Query:   113 RVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIR 158
               GV+ L Y  ++S +    ++ D  +SV AG   GA+ +++ G++
Sbjct:   148 SAGVLALTYNLIDSTIDGIREKHDDLNSVTAGALAGALFKSSAGLK 193

GO:0005886 "plasma membrane" evidence=IDA

SGD|S000005300 TIM23 "Essential component of the TIM23 complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 38/143 (26%), Positives = 66/143 (46%)

Query:    16 ETRLYNPYAELNLPAQNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGTAYLAGSVSGA 75
             +T   +P A L+   + L         L   + +   R W ++L + TG  YL G   G 
Sbjct:    54 DTARLHPLAGLDKGVEYLDLEEEQLSSLEGSQGLIPSRGWTDDLCYGTGAVYLLGLGIGG 113

Query:    76 AIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDRD 135
               G+    +++      KL++N VLN     G   GN  G++ L Y  + S + A   + 
Sbjct:   114 FSGMMQGLQNIPPNSPGKLQLNTVLNHITKRGPFLGNNAGILALSYNIINSTIDALRGKH 173

Query:   136 DVWSSVAAGLGTGAVCRAARGIR 158
             D   S+ AG  TGA+ ++++G++
Sbjct:   174 DTAGSIGAGALTGALFKSSKGLK 196

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0015266 "protein channel activity" evidence=IDA

GO:0030943 "mitochondrion targeting sequence binding" evidence=IMP;IDA

GO:0030150 "protein import into mitochondrial matrix" evidence=IMP

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA;IPI

GO:0016021 "integral to membrane" evidence=IEA;ISM

GO:0016020 "membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GENEDB_PFALCIPARUM|PF13_0300 PF13_0300 "mitochondrial inner membrane translocase, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 33/102 (32%), Positives = 55/102 (53%)

Query:    53 RSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGN 112
             R WGE L +  G AY +G + G   GL +    M+ G T KL +N VLNS+   G S  N
Sbjct:    39 RQWGEKLVYSVGLAYGSGLLLGGGCGLINGI--MKGGKTKKLFLNSVLNSTSVIGPSVAN 96

Query:   113 RVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAA 154
             ++  + +I+  + + V   T  D++++S  AG   G + +++
Sbjct:    97 QMASLTMIFYALNNMVKLITKNDEIYNSSIAGFLAGCIYKSS 138

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

UNIPROTKB|Q8IDE0 PF13_0300 "Mitochondrial inner membrane translocase, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 33/102 (32%), Positives = 55/102 (53%)

Query:    53 RSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGN 112
             R WGE L +  G AY +G + G   GL +    M+ G T KL +N VLNS+   G S  N
Sbjct:    39 RQWGEKLVYSVGLAYGSGLLLGGGCGLINGI--MKGGKTKKLFLNSVLNSTSVIGPSVAN 96

Query:   113 RVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAA 154
             ++  + +I+  + + V   T  D++++S  AG   G + +++
Sbjct:    97 QMASLTMIFYALNNMVKLITKNDEIYNSSIAGFLAGCIYKSS 138

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9USM7	TIM23_SCHPO	No assigned EC number	0.3028	0.9251	0.8238	yes	no
Q38820	TI232_ARATH	No assigned EC number	0.7417	0.9572	0.9521	yes	no
Q9LNQ1	TI231_ARATH	No assigned EC number	0.7348	0.9572	0.9572	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	187
TIGR00983	149	TIGR00983, 3a0801s02tim23, mitochondrial import in	2e-52
pfam02466	128	pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family	3e-30
COG5596	191	COG5596, TIM22, Mitochondrial import inner membran	3e-09
TIGR00980	170	TIGR00980, 3a0801so1tim17, mitochondrial import in	0.003

>gnl|CDD|130056 TIGR00983, 3a0801s02tim23, mitochondrial import inner membrane translocase subunit tim23

 Score =  164 bits (416), Expect = 2e-52
 Identities = 57/148 (38%), Positives = 81/148 (54%), Gaps = 7/148 (4%)

Query: 33  LYKLPTNPEFLFSEESI-------HQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKS 85
           L  L  +PE+L  EE         +  R W E+L F TGT YL G   GA  GL    K 
Sbjct: 1   LAPLDKDPEYLVQEEDELSLLTGANPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKE 60

Query: 86  MEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVWSSVAAGL 145
            +     KL++N++LN     G  WGN +G++ L+Y G+ S + A   + D ++SVAAG 
Sbjct: 61  TQSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIEATRGKHDDFNSVAAGA 120

Query: 146 GTGAVCRAARGIRSAAVAGAIGGLAAGA 173
            TGA+ ++ RG+R  A +GA+G  AAG 
Sbjct: 121 LTGALYKSTRGLRGMARSGALGATAAGV 148

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 149

>gnl|CDD|217053 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family

 Score =  106 bits (268), Expect = 3e-30
 Identities = 41/128 (32%), Positives = 65/128 (50%)

Query: 54  SWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNR 113
              E + + TG  +L G+V G   G      +  +   LKL++N VLN++G  G S GN 
Sbjct: 1   PCPERIVYDTGGGFLMGAVYGGFFGAPHGLVNALRSGPLKLRLNGVLNATGRRGPSHGNN 60

Query: 114 VGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGA 173
             V G +Y+G+E  +     ++D W+S+ AG  TGAV     G ++AAV  A+G   + A
Sbjct: 61  FAVFGGLYSGIECALEKLRGKEDPWNSIIAGALTGAVLGLRGGPKAAAVGAAVGAAFSAA 120

Query: 174 AVAAKQAV 181
                + +
Sbjct: 121 IEGLGKLL 128

The pre-protein translocase of the mitochondrial outer membrane (Tom) allows the import of pre-proteins from the cytoplasm. Tom forms a complex with a number of proteins, including Tim17. Tim17 and Tim23 are thought to form the translocation channel of the inner membrane. This family includes Tim17, Tim22 and Tim23. This family also includes Pmp24 a peroxisomal protein. The involvement of this domain in the targeting of PMP24 remains to be proved. PMP24 was known as Pmp27 in. Length = 128

>gnl|CDD|227883 COG5596, TIM22, Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

 Score = 53.3 bits (128), Expect = 3e-09
 Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 5/129 (3%)

Query: 53  RSWGENLTFYTGTAYLAG-SVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWG 111
             +  +L + TG  +L G +  G   GLFS           +L++   LN++G  G   G
Sbjct: 65  GGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPF----RLQLKEQLNNAGKRGFFTG 120

Query: 112 NRVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAA 171
             +GV+GLIYAG+ S + A   + D+ +++AAG  TGA   ++ G ++  + GA     +
Sbjct: 121 KNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGAGFAAFS 180

Query: 172 GAAVAAKQA 180
                A ++
Sbjct: 181 AGITLAMKS 189

Length = 191

>gnl|CDD|130053 TIGR00980, 3a0801so1tim17, mitochondrial import inner membrane translocase subunit tim17

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 64  GTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAG 123
           G A+  G++ G+    F  F++  KG+ L   +  +   +   G ++     V G +++ 
Sbjct: 18  GGAFAMGTIGGSIFQAFKGFRNSPKGEKLVGAMRAIKTRAPVLGGNFA----VWGGLFST 73

Query: 124 MESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGG 168
           ++  VVA   ++D W+S+ +G  TGA   A RG   A    AI G
Sbjct: 74  IDCAVVAIRKKEDPWNSIISGFLTGAAL-AVRGGPRAMRGSAILG 117

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
KOG3324	206	consensus Mitochondrial import inner membrane tran	100.0
TIGR00983	149	3a0801s02tim23 mitochondrial import inner membrane	100.0
PTZ00236	164	mitochondrial import inner membrane translocase su	99.97
TIGR00980	170	3a0801so1tim17 mitochondrial import inner membrane	99.97
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	99.94
KOG3225	168	consensus Mitochondrial import inner membrane tran	99.92
KOG1652	183	consensus Mitochondrial import inner membrane tran	99.91
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	99.88
KOG4608	270	consensus Uncharacterized conserved protein [Funct	99.23
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	97.42
TIGR00983	149	3a0801s02tim23 mitochondrial import inner membrane	95.89
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	93.88
KOG4096	75	consensus Uncharacterized conserved protein [Funct	92.85
PF10247	67	Romo1: Reactive mitochondrial oxygen species modul	92.42
KOG1398	460	consensus Uncharacterized conserved protein [Funct	87.7
PTZ00236	164	mitochondrial import inner membrane translocase su	86.16

>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-53  Score=348.44  Aligned_cols=183  Identities=51%  Similarity=0.798  Sum_probs=175.4

Q ss_pred             CCCCCCCCC-CCCCCCCCCcccCCCCc--ccccCCCCCCcccchhhhhhhcCcccchhhhhhhhhhHhhhhHHHHHHHHH
Q 044037            5 TPVGSDHER-DPETRLYNPYAELNLPA--QNLYKLPTNPEFLFSEESIHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFS   81 (187)
Q Consensus         5 ~~~~~~~~~-~~~~~~~~Py~~~~~~~--~~l~~~~~~pE~l~~ee~~~~~r~~~e~l~~~tG~~y~~G~~~G~~~G~~~   81 (187)
                      .++.++|+. +..+++||||++++.+.  ++||.+|++|||||+||..+++|.|+|++||.||++|+.|+++|+++|++.
T Consensus        20 ~n~~sg~~~~d~~~~~l~P~~~ld~~~n~d~ly~~~~~pefl~~~eg~~~~rgw~E~l~f~tG~~yl~G~~iGa~~G~~~   99 (206)
T KOG3324|consen   20 GNIGSGPSHADLDPRPLNPYQPLDKPLNVDYLYLLPDQPEFLFPEEGAIKRRGWFENLTFGTGWAYLTGSAIGAFNGLIL   99 (206)
T ss_pred             CCCCCCCCcccCCccccCcccccccccccchhhhccCCccccCchhccccccchhhhhheeccchhccchhhhhHHHHHH
Confidence            355666655 57889999999998777  999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhhHhhhccCCchhHHHHHHHHHHHHhhhccChHHHH
Q 044037           82 AFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAA  161 (187)
Q Consensus        82 g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~i~~~R~k~D~~Nsv~AG~~TGal~~~~~G~ra~~  161 (187)
                      |+++++.+.+.|+|+|+|||+++|+|+.|||++|+++++|+++|++|++.|+|||++|+|+||++||+|||+++|+|+++
T Consensus       100 Glk~~e~~~~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~dd~lnsv~AGalTGalyrs~~Glr~~a  179 (206)
T KOG3324|consen  100 GLKNTENGASGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIEATRGKDDDLNSVAAGALTGALYRSTRGLRAAA  179 (206)
T ss_pred             hhhcCCCCCccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhcCCCchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh-hcCC
Q 044037          162 VAGAIGGLAAGAAVAAKQAVKR-YVPI  187 (187)
Q Consensus       162 ig~a~G~~la~a~~~~~~~~~r-~~~~  187 (187)
                      +++++|++++++|++.|+.++| |+||
T Consensus       180 v~ga~g~~aa~aw~l~k~~~~~r~~~~  206 (206)
T KOG3324|consen  180 VAGAVGGTAAAAWTLGKRIVKRRFVPI  206 (206)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhcCCC
Confidence            9999999999999999999999 9997

>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23

Probab=100.00  E-value=4.9e-46  Score=296.09  Aligned_cols=140  Identities=37%  Similarity=0.600  Sum_probs=130.3

Q ss_pred             cCCCCCCcccchhhhhhhcCcccchhhhhhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhh
Q 044037           34 YKLPTNPEFLFSEESIHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNR  113 (187)
Q Consensus        34 ~~~~~~pE~l~~ee~~~~~r~~~e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~  113 (187)
                      |...++||++|||++ .++|.|+|++||+||++|++|+++|+++|+++|+++.|.+.+.|+|+|++||+++++++++||+
T Consensus        10 ~l~~~~~~~~~~~g~-~~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~~g~~~G~~   88 (149)
T TIGR00983        10 YLVQEEDELSLLTGA-NPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNT   88 (149)
T ss_pred             HHcCcchhhcCCCCC-CCCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhHhHHHHHH
Confidence            555555666666655 3899999999999999999999999999999999998777788999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHhhhccCCchhHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHH
Q 044037          114 VGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAA  174 (187)
Q Consensus       114 fgvig~lysg~e~~i~~~R~k~D~~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~  174 (187)
                      ||+|+++|+++||+++++|+|||+||+|+||++||++|++++|||++++++++|++++++|
T Consensus        89 ~g~~g~lys~~e~~i~~~R~k~D~~Nsv~AGa~TGal~~~~~G~r~~~~g~~~G~~l~~~~  149 (149)
T TIGR00983        89 LGILALVYNGINSIIEATRGKHDDFNSVAAGALTGALYKSTRGLRGMARSGALGATAAGVW  149 (149)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHhccChHHHHHHhHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999876

>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional

Probab=99.97  E-value=1.3e-31  Score=215.88  Aligned_cols=131  Identities=18%  Similarity=0.279  Sum_probs=122.0

Q ss_pred             hhcCcccchhhhhhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhhHh
Q 044037           50 HQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVV  129 (187)
Q Consensus        50 ~~~r~~~e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~i~  129 (187)
                      ++++.|  .+.-..|.+|.+|++.|+++++++|++++|.+    .|++..++.+++++++++++||+||++|+++||+++
T Consensus         8 r~pcp~--ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~g----~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~   81 (164)
T PTZ00236          8 REPCPD--RIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKG----ERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQ   81 (164)
T ss_pred             cCCCch--HHHHhccHHHHHHHHHHHHHHHHHHHHhCCCc----chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            334444  77777999999999999999999999998754    478999999999999999999999999999999999


Q ss_pred             hhccCCchhHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 044037          130 AATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYVP  186 (187)
Q Consensus       130 ~~R~k~D~~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~~~~~~~~r~~~  186 (187)
                      ++|+|||+||+++||++||++|++++||++++.++++|++++++++++..+++||.+
T Consensus        82 ~~R~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie~~~i~~~~~~~  138 (164)
T PTZ00236         82 YLRGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIELVSIGMNRRQM  138 (164)
T ss_pred             HHHccCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999864

>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17

Probab=99.97  E-value=2.2e-31  Score=215.75  Aligned_cols=135  Identities=21%  Similarity=0.382  Sum_probs=124.8

Q ss_pred             hhhhhhcCcccchhhhhhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhh
Q 044037           46 EESIHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGME  125 (187)
Q Consensus        46 ee~~~~~r~~~e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e  125 (187)
                      ||..+..+.|  +.....|.+|.+|++.|++||+++|+++++.++    |++.++|+++.++++++++||+|+++|+++|
T Consensus         2 ~~~~r~pcp~--r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~----rl~g~l~av~~rap~~g~~Fav~g~lys~~e   75 (170)
T TIGR00980         2 EEYTREPCPY--RILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGE----KLVGAMRAIKTRAPVLGGNFAVWGGLFSTID   75 (170)
T ss_pred             cccccCCCcc--hhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccc----hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            4444566666  777789999999999999999999999886432    7889999999999999999999999999999


Q ss_pred             hhHhhhccCCchhHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 044037          126 SGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYVP  186 (187)
Q Consensus       126 ~~i~~~R~k~D~~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~~~~~~~~r~~~  186 (187)
                      |+++++|+|||+||+++||++||++|++++|+|+++.+|++++++.++++....+++|+.+
T Consensus        76 c~i~~~R~KeD~~NsiiAG~~TGa~l~~r~G~~a~~~~aa~gg~~la~ie~~g~~~~~~~~  136 (170)
T TIGR00980        76 CAVVAIRKKEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGACILAVIEGVGLVLTRWAA  136 (170)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999864

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=99.94  E-value=1.4e-26  Score=177.67  Aligned_cols=127  Identities=33%  Similarity=0.519  Sum_probs=119.2

Q ss_pred             cccchhhhhhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhhHhhhcc
Q 044037           54 SWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATD  133 (187)
Q Consensus        54 ~~~e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~i~~~R~  133 (187)
                      +|.|+.++.++.+|+.|+++|++.++.++....+.+.+.|.+++.++|.+++++++++++||+++++|+++||.++++|+
T Consensus         1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~   80 (128)
T PF02466_consen    1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG   80 (128)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            46788999999999999999999999988665555677888999999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHHH
Q 044037          134 RDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQA  180 (187)
Q Consensus       134 k~D~~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~~~~~~  180 (187)
                      |||+||+++||++||++|+.+.|++.++.+++++++++++++..+++
T Consensus        81 k~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~  127 (128)
T PF02466_consen   81 KDDPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYYGRM  127 (128)
T ss_pred             ccccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999998875

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2e-25  Score=177.56  Aligned_cols=119  Identities=22%  Similarity=0.254  Sum_probs=107.7

Q ss_pred             chhhhhhhhhhHhhhhHHHHHHHHHHhhcccCCCh---hHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhhHhhhcc
Q 044037           57 ENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDT---LKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATD  133 (187)
Q Consensus        57 e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~---~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~i~~~R~  133 (187)
                      ++|.+++-.+.++|..+|+++|+|.+..+.+.++|   .++-+.++++.+++|+.+++++||++|++|+++||+||.+|.
T Consensus        40 n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~iE~~RA  119 (168)
T KOG3225|consen   40 NSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSGVECLIESFRA  119 (168)
T ss_pred             cchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehhHHHHHHHHHh
Confidence            47888999999999999999999999999654433   345567889999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHH
Q 044037          134 RDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAV  175 (187)
Q Consensus       134 k~D~~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~  175 (187)
                      |+||+|+++|||+||+.+..++||+++++||+..+++++++.
T Consensus       120 K~D~~NgaiaG~vtGg~l~~raGp~a~~~G~agfa~fS~~id  161 (168)
T KOG3225|consen  120 KSDWYNGAIAGCVTGGSLGYRAGPKAAAIGCAGFAAFSAAID  161 (168)
T ss_pred             hhchhcceeeeeeeccchhhcccchhhhhchhHHHHHHHHHH
Confidence            999999999999999999999999999999999887766654

>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.1e-25  Score=182.15  Aligned_cols=132  Identities=18%  Similarity=0.342  Sum_probs=122.0

Q ss_pred             hhhhcCcccchhhhhhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhh
Q 044037           48 SIHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESG  127 (187)
Q Consensus        48 ~~~~~r~~~e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~  127 (187)
                      ..+.++.|  ++.-..|.++.+|.+-|.+|++++|+++++.+.    |+...++.+..+.+..|++||+||++||.+||+
T Consensus         4 ~sr~pcp~--riv~d~g~afamg~igG~~f~~ikG~~nap~G~----r~~gg~~av~~~ap~~ggsFAvwgglfSt~dC~   77 (183)
T KOG1652|consen    4 YSREPCPI--RIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGA----RLVGGISAVKMRAPQSGGSFAVWGGLFSTVDCA   77 (183)
T ss_pred             ccCCCCCc--eeeccccchhhhcccccceeeeeeeeecCCccc----ccccchhhhhccCcccccceeeeechhhHHHHH
Confidence            34556666  666678999999999999999999999887554    777889999999999999999999999999999


Q ss_pred             HhhhccCCchhHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044037          128 VVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKRYV  185 (187)
Q Consensus       128 i~~~R~k~D~~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~~~~~~~~r~~  185 (187)
                      +..+|+|||.||+|++|++||+++..+.|+++++.++++++++.+.++.+...++|+.
T Consensus        78 Lv~~R~KeDpwNsivsGa~TGg~La~r~g~~a~~~sa~~~g~~lamieg~g~~~t~~~  135 (183)
T KOG1652|consen   78 LVAIRKKEDPWNSIVSGAATGGLLAARGGPKAMLTSAITGGLLLAMIEGLGIQVTKIA  135 (183)
T ss_pred             HHHHhcccchHHHHHHHhhccceeeccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999875

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=3.1e-24  Score=174.62  Aligned_cols=146  Identities=25%  Similarity=0.333  Sum_probs=133.7

Q ss_pred             ccccCCCCCCcccchhhh----------hhhcCcccchhhhhhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHH
Q 044037           31 QNLYKLPTNPEFLFSEES----------IHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVL  100 (187)
Q Consensus        31 ~~l~~~~~~pE~l~~ee~----------~~~~r~~~e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~l  100 (187)
                      .+|-++-+.-+|+..++.          ....+.|.+++|+.|+..++.|.-+|++||   |+.+.....++++|++..+
T Consensus        33 ~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwG---gl~~~i~~~~~r~q~~~~~  109 (191)
T COG5596          33 EKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWG---GLFSTIDCTPFRLQLKEQL  109 (191)
T ss_pred             hHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCcccccccc---ceeeccccchHHHHHhhcc
Confidence            456667677778877776          236788999999999999999999999999   8887777789999999999


Q ss_pred             HhhccccccchhhHHHHHHHHHhhhhhHhhhccCCchhHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHH
Q 044037          101 NSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQ  179 (187)
Q Consensus       101 n~~~k~g~~~gn~fgvig~lysg~e~~i~~~R~k~D~~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~~~~~  179 (187)
                      |.+++++.+.||+||++|++|+++||.|+.+|+|||+.|+|.||+.||++|+.++|+|++.+++++.++.++.|+..++
T Consensus       110 ~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~qa~~~~~a~~aa~s~~~~~~~~  188 (191)
T COG5596         110 NNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGAGFAAFSAGITLAMK  188 (191)
T ss_pred             ccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccccccccCccchhhhhhhHHhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999988765

>KOG4608 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.23  E-value=2.6e-12  Score=108.82  Aligned_cols=161  Identities=23%  Similarity=0.289  Sum_probs=122.0

Q ss_pred             CCCCCCCCcccCCCCcccccCCCCCCcccchhhhhhhc-Ccccchhhhhh-hhhhHhhhhHHHHHHHHHHhhcccCC---
Q 044037           15 PETRLYNPYAELNLPAQNLYKLPTNPEFLFSEESIHQR-RSWGENLTFYT-GTAYLAGSVSGAAIGLFSAFKSMEKG---   89 (187)
Q Consensus        15 ~~~~~~~Py~~~~~~~~~l~~~~~~pE~l~~ee~~~~~-r~~~e~l~~~t-G~~y~~G~~~G~~~G~~~g~~~~~~g---   89 (187)
                      ..+..+.||.-...||.      |.||=|  .+ +... -+|.-+.++++ .+++++|.+.|++-+...+-.....+   
T Consensus        36 ~e~~~~k~~eave~ppe------Tgwerl--k~-lfg~dis~e~a~v~~v~a~~flgG~~~ggat~s~~A~~~y~~nsqa  106 (270)
T KOG4608|consen   36 EERQKRKPYEAVEYPPE------TGWERL--KE-LFGKDISKELANVCKVAATAFLGGWVYGGATASIHAKQQYIENSQA  106 (270)
T ss_pred             HhhcccccccccCCCCc------cchHHH--HH-HhCCCcchhhHHHHHHHHHhhhhheeeccchHhHHHHHHHHhccHH
Confidence            45566777775544443      555533  11 1112 25644456665 67799999999999888776654211   


Q ss_pred             -------ChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhhHhhhccCCchhHHHHHHHHHHHHhhhccChHHHHH
Q 044037           90 -------DTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAV  162 (187)
Q Consensus        90 -------~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~i~~~R~k~D~~Nsv~AG~~TGal~~~~~G~ra~~i  162 (187)
                             +-.|-...+......|.|.+||.+.|++...|..+...+..||+|||.+|-++||++||++|+..-|++..+-
T Consensus       107 ~ky~sh~davk~~~d~air~farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g~aa  186 (270)
T KOG4608|consen  107 EKYHSHFDAVKSAHDAAIRGFARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRGLAA  186 (270)
T ss_pred             HHhhChHHHHHHHHHHHHHHHhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHHHhh
Confidence                   1223334566777899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhh
Q 044037          163 AGAIGGLAAGAAVAAKQAVKRY  184 (187)
Q Consensus       163 g~a~G~~la~a~~~~~~~~~r~  184 (187)
                      +.++|+++.+..++.-.+++++
T Consensus       187 ~vilG~~lG~tv~~~l~l~q~a  208 (270)
T KOG4608|consen  187 GVILGALLGTTVGGLLMLFQKA  208 (270)
T ss_pred             cceeehhhcchHHHHHHHHHHH
Confidence            9999998888888877777665

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=2.1e-05  Score=64.75  Aligned_cols=94  Identities=13%  Similarity=0.095  Sum_probs=68.8

Q ss_pred             hhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHH-HHHHHHHhhhhhHhhhccCCchhHHH
Q 044037           63 TGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVG-VIGLIYAGMESGVVAATDRDDVWSSV  141 (187)
Q Consensus        63 tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fg-vig~lysg~e~~i~~~R~k~D~~Nsv  141 (187)
                      -+.++-.+.+.+.++.-++|++......    ++..-+...+.+.+-.|.+|| +||.+++.++|...++|.+.|.||..
T Consensus        38 ~~~~~~~~~i~k~~~s~l~G~~~g~~~g----~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~  113 (191)
T COG5596          38 FMKAFSYSCIGKSALSGLKGFRLGGPSG----GFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAG  113 (191)
T ss_pred             hccchhhcchhhhhhhcccccccccccc----cchhhcccccccccccCccccccccceeeccccchHHHHHhhcccccc
Confidence            3444445566666666666666543221    122234455566777888888 99999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccChHHH
Q 044037          142 AAGLGTGAVCRAARGIRSA  160 (187)
Q Consensus       142 ~AG~~TGal~~~~~G~ra~  160 (187)
                      ..|+.||..+....++++.
T Consensus       114 ~rg~ftG~n~GvlGl~y~~  132 (191)
T COG5596         114 KRGFFTGKNLGVLGLIYAG  132 (191)
T ss_pred             ccccccccccceeeeeccc
Confidence            9999999998887765443

>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23

Probab=95.89  E-value=0.041  Score=44.03  Aligned_cols=100  Identities=20%  Similarity=0.054  Sum_probs=62.9

Q ss_pred             ccCCCCCCcccchhhhhh--hcCcccchhhhh-hhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhcccccc
Q 044037           33 LYKLPTNPEFLFSEESIH--QRRSWGENLTFY-TGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRS  109 (187)
Q Consensus        33 l~~~~~~pE~l~~ee~~~--~~r~~~e~l~~~-tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~  109 (187)
                      ||.||++|||||+||...  ++..--.+-... .=-...+..++|.+.|.+.|+...-.+.+.......-+|.+.+...+
T Consensus         1 l~~l~~~~~~l~~~~~~~~~~~g~~~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~   80 (149)
T TIGR00983         1 LAPLDKDPEYLVQEEDELSLLTGANPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTR   80 (149)
T ss_pred             CCCCCCCcHHHcCcchhhcCCCCCCCCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHh
Confidence            577899999999998631  111111123332 23335566889999999999986533333222334557777777777


Q ss_pred             chhhHHHHHHHHHhhhhhHhhhc
Q 044037          110 WGNRVGVIGLIYAGMESGVVAAT  132 (187)
Q Consensus       110 ~gn~fgvig~lysg~e~~i~~~R  132 (187)
                      -+-++|---++...+=+++|..=
T Consensus        81 ~g~~~G~~~g~~g~lys~~e~~i  103 (149)
T TIGR00983        81 RGPFWGNTLGILALVYNGINSII  103 (149)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHH
Confidence            77777776666666666665543

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=93.88  E-value=0.36  Score=36.48  Aligned_cols=125  Identities=23%  Similarity=0.097  Sum_probs=87.5

Q ss_pred             hhhhhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhhHhhhccCCchh
Q 044037           59 LTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVW  138 (187)
Q Consensus        59 l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~i~~~R~k~D~~  138 (187)
                      |..++-.+.+.|++.|.++|.+.+..+...........++.++.+-+...+.+...|..-+.+.++=++++..=.+-=-.
T Consensus         2 c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~k   81 (128)
T PF02466_consen    2 CPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRGK   81 (128)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            44567888999999999999999998653222223344556777777777777777777777777777777664333345


Q ss_pred             HHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044037          139 SSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVKR  183 (187)
Q Consensus       139 Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~~~~~~~~r  183 (187)
                      +-..-.++.|++=.+--|.+.-..+.+.++++.++....=..++|
T Consensus        82 ~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~  126 (128)
T PF02466_consen   82 DDPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYYGR  126 (128)
T ss_pred             cccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhc
Confidence            778888888888777667777777777777766666655544444

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>KOG4096 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.85  E-value=0.067  Score=37.91  Aligned_cols=64  Identities=17%  Similarity=0.228  Sum_probs=40.8

Q ss_pred             chhhhhhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhh
Q 044037           57 ENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESG  127 (187)
Q Consensus        57 e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~  127 (187)
                      |++-...-+++.+|...|.++|-|.+++.-+       |-...++.++|.-...+.+||.+-.+=+++.|.
T Consensus         9 dKikmG~~mG~avG~a~G~lfGgf~~lR~g~-------~g~~~vr~iGkt~~~SagtFG~FM~igs~Ir~~   72 (75)
T KOG4096|consen    9 DKIKMGLMMGGAVGGATGALFGGFAALRYGP-------RGRGLVRTIGKTMLQSAGTFGLFMGIGSGIRCG   72 (75)
T ss_pred             HHHHHHHHHHhhhhhhhhhhccchhheeecC-------ChhHHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence            3333333344444555555555556655432       334668889999999999999888887777765

>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain

Probab=92.42  E-value=0.068  Score=37.40  Aligned_cols=60  Identities=15%  Similarity=0.139  Sum_probs=34.8

Q ss_pred             hhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhh
Q 044037           62 YTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGM  124 (187)
Q Consensus        62 ~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~  124 (187)
                      +.-+++++|..+|++.|++-|..+.-.   .++|-+.+++.++|.-...|.+||.+-.+=+.+
T Consensus         6 kikmG~~MG~~VG~~~G~l~G~~~~~r---~g~~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~I   65 (67)
T PF10247_consen    6 KIKMGFMMGGAVGGAFGALFGTFSAFR---YGARGRGLMRTLGKYMLGSGATFGFFMSIGSVI   65 (67)
T ss_pred             HHHHHHHHhhHHHhhhhhhhhhHHHhc---cCCCCcchHhHHhHHHhcchhHHHHHHhhhccc
Confidence            345566666666666665555544310   122234567778888888888888765544433

An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].

>KOG1398 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.70  E-value=0.75  Score=42.38  Aligned_cols=46  Identities=15%  Similarity=0.228  Sum_probs=41.1

Q ss_pred             cccccchhhHHHHHHHHHhhhhhHhhhccCCchhHHHHHHHHHHHH
Q 044037          105 HSGRSWGNRVGVIGLIYAGMESGVVAATDRDDVWSSVAAGLGTGAV  150 (187)
Q Consensus       105 k~g~~~gn~fgvig~lysg~e~~i~~~R~k~D~~Nsv~AG~~TGal  150 (187)
                      |...+.|-=+|.+.++|.++.|.+.+.+.+||..|++.||.+++.-
T Consensus       297 renlqlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~S  342 (460)
T KOG1398|consen  297 RENLQLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLS  342 (460)
T ss_pred             cccchhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhhe
Confidence            5566777778999999999999999999999999999999998854

>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional

Probab=86.16  E-value=5  Score=32.71  Aligned_cols=129  Identities=10%  Similarity=0.010  Sum_probs=91.0

Q ss_pred             hhhcCcccchhhhhhhhhhHhhhhHHHHHHHHHHhhcccCCChhHHHHHHHHHhhccccccchhhHHHHHHHHHhhhhhH
Q 044037           49 IHQRRSWGENLTFYTGTAYLAGSVSGAAIGLFSAFKSMEKGDTLKLKINRVLNSSGHSGRSWGNRVGVIGLIYAGMESGV  128 (187)
Q Consensus        49 ~~~~r~~~e~l~~~tG~~y~~G~~~G~~~G~~~g~~~~~~g~~~k~r~~~~ln~~~k~g~~~gn~fgvig~lysg~e~~i  128 (187)
                      .++.|.+ |++--.-.++.+.|++.+.+.|+........-..    -++.+-.....-+..+|.--++..++.+.++..=
T Consensus        10 pcp~ri~-dd~G~af~~G~vgG~~~~~~~G~rnsp~g~rl~g----~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R   84 (164)
T PTZ00236         10 PCPDRII-EDMGGAFSMGCIGGFIWHFLKGMRNSPKGERFSG----GFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYLR   84 (164)
T ss_pred             CCchHHH-HhccHHHHHHHHHHHHHHHHHHHHhCCCcchHHH----HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777 5555555778889999999999988865533211    1233333344455556666688888999998887


Q ss_pred             hhhccCCchhHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044037          129 VAATDRDDVWSSVAAGLGTGAVCRAARGIRSAAVAGAIGGLAAGAAVAAKQAVK  182 (187)
Q Consensus       129 ~~~R~k~D~~Nsv~AG~~TGal~~~~~G~ra~~ig~a~G~~la~a~~~~~~~~~  182 (187)
                      .+---..-.+-..+.|++-++--..++=.+++++++++.+++.++..++++++.
T Consensus        85 ~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie~~~i~~~~~~~  138 (164)
T PTZ00236         85 GKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIELVSIGMNRRQM  138 (164)
T ss_pred             ccCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            666656667888888888655544454578899999999999999888887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00