Citrus Sinensis ID: 044091

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MISSLSPQLLIKPNTATTLSPIPHVQNQRFKLASHVCPSELLSIRKRPGSACAATTQHRRYLLFPAEEEEEEEREVKFTSDAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIRTS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHcccccccEEEEEEccccHHHHccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEcccccccccccccHHcHHHHHHHHHcccccHEEccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHcHHHccccccccEEEEEEccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccHHHccHHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHHHHHHHccccHHHccHHHHHcccHccccccccccEEEEcc
Coil and Loop (DISEMBL)
misslspqllikpntattlspiphvqnqrfklashvcpsellsirkrpgsacaattqhrryllfpaeeeeeeerevkftsdapALAEELQRESMPRHVAVIMDGNrrwahlrglpvgsgyeAGVKSLKTLVELCCKWGIRVLTVFAfssdnwfrpEVEVEFLMSLLESGVKEEKESFIRERIRISvigdtsklpKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKdgliepndvseSLIEQELetnctefpypdllirts
Flexible Loop (DISEMBL)
misslspqllikpntattlspipHVQNQRFKLASHVCPSELLSIRKRPGSACAATTQHRRYLLFPAEEEEEEEREVKFTSDAPALAeelqresmpRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVkeekesfireririsvigdtsklpkCLEELVINVVettknntrFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQeletnctefpypdllirts
Low Complexity Region (SEG)
MISSLSPQLLIKPNTATTLSPIPHVQNQRFKLASHVCPSELLSIRKRPGSACAATTQHRRYLLFPAeeeeeeereVKFTSDAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIRTS
Disordered region (IsUnstruct)
************************VQNQRFKLASHVCPSELLSIR*****ACAATTQHRRYLL*********************************HVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLL****
Disordered Region (DISOPRED)
******P*LLIKPNTATTLSPIPHVQNQRFKLASHVCP*******************************************************MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIRTS
Disordered Region (DISEMBL)
MISSLSPQLLIKPNTATTLSPIPHVQNQRFKLASHVCPSELLSIRKRPGSACAATTQHRRYLLFPAE************SDAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIRTS
Disordered Region (DISPRO)
****LSPQLLIKPNTATTLSPIPHVQNQRFKLASHVCPSELLSIRKRPGSACAATTQHRRYLLFPAEEEEEEEREVKFTSDAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIRTS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISSLSPQLLIKPNTATTLSPIPHVQNQRFKLASHVCPSELLSIRKRPGSACAATTQHRRYLLFPAEEEEEEEREVKFTSDAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIRTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
Q56Y11	310	Dehydrodolichyl diphospha	yes	no	0.669	0.593	0.635	1e-65
Q8RX73	302	Dehydrodolichyl diphospha	no	no	0.690	0.629	0.531	3e-51
Q8GY03	289	Dehydrodolichyl diphospha	no	no	0.687	0.653	0.513	6e-50
Q570Q8	302	Dehydrodolichyl diphospha	no	no	0.872	0.794	0.430	1e-47
O80458	303	Dehydrodolichyl diphospha	no	no	0.68	0.617	0.478	3e-46
Q8DI29	251	Isoprenyl transferase OS=	yes	no	0.687	0.752	0.460	9e-45
Q9ZEJ7	249	Isoprenyl transferase OS=	yes	no	0.676	0.746	0.441	1e-43
P58563	249	Isoprenyl transferase 1 O	yes	no	0.676	0.746	0.441	2e-43
Q55482	249	Isoprenyl transferase OS=	N/A	no	0.687	0.759	0.439	4e-43
B8XA40	303	(2Z,6Z)-farnesyl diphosph	N/A	no	0.658	0.597	0.430	1e-40

>sp|Q56Y11|DDPS2_ARATH Dehydrodolichyl diphosphate synthase 2 OS=Arabidopsis thaliana GN=At5g58770 PE=2 SV=2

 Score =  250 bits (638), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 117/184 (63%), Positives = 145/184 (78%)

Query: 92  ESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDN 151
           E MP+HVA+IMDGN RWA  RGL    G+ AGV++LK +VELC KWGI+VLTVFAFS+DN
Sbjct: 75  ELMPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDN 134

Query: 152 WFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNN 211
           W RP +E++FL SL E  +K E ++  +  +RIS+IGD+SKLPK L  ++  V E TKNN
Sbjct: 135 WIRPRIEIDFLFSLFERSLKTEFQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNN 194

Query: 212 TRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLL 271
           TR QLIVAV YSG+YD++QAC+ IA +VKDG IE  ++ E LIE+ELETNCTEFPYPDLL
Sbjct: 195 TRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEIDERLIEEELETNCTEFPYPDLL 254

Query: 272 IRTS 275
           IRTS
Sbjct: 255 IRTS 258

Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: -

>sp|Q8RX73|DDPS3_ARATH Dehydrodolichyl diphosphate synthase 3 OS=Arabidopsis thaliana GN=At5g58780 PE=2 SV=1

 Score =  202 bits (513), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/190 (53%), Positives = 133/190 (70%)

Query: 86  AEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVF 145
            EELQRE MPRHVAVIMDGNRRWA   GL    G+EAG K L    ELC K GI  ++ F
Sbjct: 62  VEELQRELMPRHVAVIMDGNRRWAKRAGLLTSQGHEAGAKRLIEFSELCFKLGIHTVSAF 121

Query: 146 AFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVV 205
           AFS++NW R ++EV+ LMSL++  +K + + F RE  R+SVIG+ +K+P+ L   V  + 
Sbjct: 122 AFSTENWGRHKIEVKCLMSLIQHYLKSKIQYFQREETRVSVIGNLTKIPESLLRTVQEIE 181

Query: 206 ETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEF 265
           E T++  +  LI+A+ YSG+ D+++AC+ I  K + GLI   DV E+LIE+EL TNCTEF
Sbjct: 182 EATRSYKKKHLILAIDYSGRLDILRACKSIVKKSEKGLIREEDVDEALIERELLTNCTEF 241

Query: 266 PYPDLLIRTS 275
           P PDLLIRTS
Sbjct: 242 PSPDLLIRTS 251

Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q8GY03|DDPS4_ARATH Dehydrodolichyl diphosphate synthase 4 OS=Arabidopsis thaliana GN=At5g58782 PE=2 SV=1

 Score =  197 bits (501), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 97/189 (51%), Positives = 130/189 (68%)

Query: 87  EELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFA 146
           +ELQRE MPRHVAVIMDGNRRWA   GL    GYEAG K L    +LC K GI  ++ FA
Sbjct: 50  KELQRELMPRHVAVIMDGNRRWAKQTGLLTSQGYEAGAKRLLEFADLCFKLGINTVSAFA 109

Query: 147 FSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVE 206
           FS++NW R ++EV+ LM L +  +K + + F  + IR+SVIG+ +K+P+ L   V  + E
Sbjct: 110 FSTENWGRHKIEVKCLMYLFQRYLKSKIQFFQSKEIRVSVIGNLAKIPESLLRTVHELEE 169

Query: 207 TTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFP 266
            TK+  +  LI+A+ YSG++D++ AC+ I  K + GLI   DV E+L E+EL+T CTEFP
Sbjct: 170 ATKSYKKKHLILAIDYSGRFDILGACKNIVKKSEQGLIREEDVDETLFERELQTRCTEFP 229

Query: 267 YPDLLIRTS 275
            PDLLIRTS
Sbjct: 230 SPDLLIRTS 238

Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q570Q8|DDPS5_ARATH Dehydrodolichyl diphosphate synthase 5 OS=Arabidopsis thaliana GN=At5g58784 PE=2 SV=2

 Score =  189 bits (481), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 105/244 (43%), Positives = 151/244 (61%), Gaps = 4/244 (1%)

Query: 32  LASHVCPSELLSIRKRPGSACAATTQHRRYLLFPAEEEEEEEREVKFTSDAPALAEELQR 91
           LA  + P   L I +R     + T   R   +  ++ ++EEER  K  +      ++  R
Sbjct: 12  LALFLIPG--LFISRRLNVPLSLTNILRFIKIIASKYDDEEERNEKRGTMGEK--QKRGR 67

Query: 92  ESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDN 151
             MP+HVAVI+DGNRRWA  RGL    G+EAG + L    + C   G   +++FAFS++N
Sbjct: 68  NIMPKHVAVILDGNRRWAEKRGLGTSEGHEAGARRLMENAKDCFAMGTNTISLFAFSTEN 127

Query: 152 WFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNN 211
           W RPE EV+ LM+L E  +  +      ++I+ISVIG+ +KLP+ L  L+  V E TK+ 
Sbjct: 128 WERPEDEVKCLMALFEKYLASDMPYLRSDKIKISVIGNRTKLPESLLGLIEEVEEATKSY 187

Query: 212 TRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLL 271
               LI+A+ YSG+YD++QAC+ +A KVKDGLI+  D++E  +E+EL T C+EFP PDLL
Sbjct: 188 EGKNLIIAIDYSGRYDILQACKSLANKVKDGLIQVEDINEKAMEKELLTKCSEFPNPDLL 247

Query: 272 IRTS 275
           IRTS
Sbjct: 248 IRTS 251

Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|O80458|DDPS1_ARATH Dehydrodolichyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=DPS PE=1 SV=2

 Score =  185 bits (470), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 128/188 (68%), Gaps = 1/188 (0%)

Query: 89  LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFS 148
           LQRE MPRHVA I+DGNRRWA   GL    G+EAG K L  + ELC + G+  ++ FAFS
Sbjct: 65  LQRELMPRHVAFILDGNRRWAKRAGLTTSQGHEAGAKRLIDIAELCFELGVHTVSAFAFS 124

Query: 149 SDNWFRPEVEVEFLMSLLESGV-KEEKESFIRERIRISVIGDTSKLPKCLEELVINVVET 207
           ++NW R ++E++ LMSL++    K   + F R  +R+SVIG+ +K+P+ L + +  + E 
Sbjct: 125 TENWGRDKIEIDNLMSLIQHYRNKSNIKFFHRSEVRVSVIGNKTKIPESLLKEIHEIEEA 184

Query: 208 TKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPY 267
           TK      LI+AV YSG++D++ AC+ +  K + GLI   DV E+LIE+EL TNC++FP 
Sbjct: 185 TKGYKNKHLIMAVDYSGKFDIMHACKSLVKKSEKGLIREEDVDEALIERELLTNCSDFPS 244

Query: 268 PDLLIRTS 275
           PDL+IRTS
Sbjct: 245 PDLMIRTS 252

Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 8

EC: 7

>sp|Q8DI29|ISPT_THEEB Isoprenyl transferase OS=Thermosynechococcus elongatus (strain BP-1) GN=uppS PE=3 SV=1

 Score =  180 bits (457), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 88/191 (46%), Positives = 122/191 (63%), Gaps = 2/191 (1%)

Query: 85  LAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTV 144
           L  +L R+ +PRHVAVIMDGN RWA  R LP   G++ GV +LK L+  C  WGI  LT 
Sbjct: 13  LPADLDRDRLPRHVAVIMDGNGRWAKQRNLPRIMGHQRGVDTLKDLLRCCKDWGIEALTA 72

Query: 145 FAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINV 204
           +AFS++NW RP  EVEFLM+L E  ++ E    + E ++I  +GD + LPK L+  +   
Sbjct: 73  YAFSTENWGRPLPEVEFLMTLFEQVLRRELGEMVAEGVQIHFVGDLTCLPKSLQAEIERA 132

Query: 205 VETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTE 264
           V  T NN + + +VA +Y G+ +++ AC+ IA +VK GL++P D+ E L E+ L T    
Sbjct: 133 VAATANNQKIKFVVATNYGGRREIIHACRSIAAQVKAGLLDPADIDEVLFERHLYTGG-- 190

Query: 265 FPYPDLLIRTS 275
            P PDLLIRTS
Sbjct: 191 LPDPDLLIRTS 201

Generates ditrans,octacis-undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) and farnesyl diphosphate. UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|Q9ZEJ7|ISPT_ANAVT Isoprenyl transferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=uppS PE=3 SV=2

 Score =  176 bits (446), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/188 (44%), Positives = 127/188 (67%), Gaps = 2/188 (1%)

Query: 88  ELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAF 147
           +L+RE +P+HVAVIMDGN RWA  +GLP   G++ GV +LK L+  C  WGI+ LT +AF
Sbjct: 14  DLKRELLPKHVAVIMDGNGRWAKRQGLPRIMGHKRGVDALKDLLRCCRDWGIQALTAYAF 73

Query: 148 SSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVET 207
           S++NW RP+ EVEFLM+L +  +++E    + E ++I  +G+ + LP+ L+  +   +E 
Sbjct: 74  STENWKRPQEEVEFLMTLFQRVLRQELREMVEENVQIQFVGNLAALPRSLQAEISRSMEA 133

Query: 208 TKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPY 267
           TKNN   +  VA +Y G+ +++QAC+ IA KV+ GL++P+++ E + E+ L T       
Sbjct: 134 TKNNRGIRFSVATNYGGRQEILQACRAIAQKVQQGLLQPDEIDEEVFERHLYT--AGIAD 191

Query: 268 PDLLIRTS 275
           PDLLIRTS
Sbjct: 192 PDLLIRTS 199

Generates ditrans,octacis-undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) and farnesyl diphosphate. UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|P58563|ISPT1_NOSS1 Isoprenyl transferase 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=uppS1 PE=3 SV=1

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/188 (44%), Positives = 128/188 (68%), Gaps = 2/188 (1%)

Query: 88  ELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAF 147
           +L+RE +P+HVAVIMDGN RWA  +GLP   G++ GV +LK L+  C  WGI+ LT +AF
Sbjct: 14  DLKRELLPKHVAVIMDGNGRWAKRQGLPRIMGHKRGVDALKDLLRCCRDWGIQALTAYAF 73

Query: 148 SSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVET 207
           S++NW RP+ EVEFLM+L +  +++E    + E ++I  +G+ + LP+ L+  +   +E 
Sbjct: 74  STENWKRPQEEVEFLMTLFQRVLRQELREMVEENVQIQFVGNLTALPRSLQAEISRSMEE 133

Query: 208 TKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPY 267
           TKNN   +  VA +Y G+ +++QAC+ IA KV+ GL++P++++E + E+ L T       
Sbjct: 134 TKNNRGIRFSVATNYGGRQEILQACRAIAQKVQQGLLQPDEINEEVFERHLYT--AGISD 191

Query: 268 PDLLIRTS 275
           PDLLIRTS
Sbjct: 192 PDLLIRTS 199

Generates ditrans,octacis-undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) and farnesyl diphosphate. UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|Q55482|ISPT_SYNY3 Isoprenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=uppS PE=3 SV=1

 Score =  175 bits (443), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 84/191 (43%), Positives = 124/191 (64%), Gaps = 2/191 (1%)

Query: 85  LAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTV 144
           L  +L ++ +P+HVAVIMDGN RWA  RG+P   G++ GV SLK L+  C  WGI  LT 
Sbjct: 11  LPPDLDQQRLPQHVAVIMDGNGRWAKQRGMPRIMGHQRGVDSLKNLLRCCDDWGIAALTA 70

Query: 145 FAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINV 204
           +AFS++NW RP  EVEFLM+L E  ++ E +  + E +RI  +G+ + LP+ L++ +   
Sbjct: 71  YAFSTENWGRPLEEVEFLMTLFERVLRRELKEMMAENVRIRFVGNLTSLPRSLQDEIARS 130

Query: 205 VETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTE 264
           +E TKNNT  +  VA +Y G+ ++V  CQ IA +V+ G ++P  + E ++E+ L T    
Sbjct: 131 MEDTKNNTGIRFTVATNYGGRQEIVHVCQAIAREVQSGKLDPETIDEGVVEKYLYTEG-- 188

Query: 265 FPYPDLLIRTS 275
             +PDLLIRTS
Sbjct: 189 LSHPDLLIRTS 199

Generates ditrans,octacis-undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) and farnesyl diphosphate. UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|B8XA40|ZFPS_SOLHA (2Z,6Z)-farnesyl diphosphate synthase, chloroplastic OS=Solanum habrochaites GN=ZFPS PE=1 SV=1

 Score =  166 bits (421), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/188 (43%), Positives = 122/188 (64%), Gaps = 7/188 (3%)

Query: 88  ELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAF 147
           +L  E MP+H+A+IMDGNRRWA  +GL V  G++     LK + ++  K GI+V+T FAF
Sbjct: 71  DLDEELMPKHIALIMDGNRRWAKDKGLDVSEGHKHLFPKLKEICDISSKLGIQVITAFAF 130

Query: 148 SSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVET 207
           S++NW R + EV+FLM + E    E  + F R  +R+S+IG  + LP  L++ +    ET
Sbjct: 131 STENWKRAKGEVDFLMQMFE----ELYDEFSRSGVRVSIIGCKTDLPMTLQKCIALTEET 186

Query: 208 TKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPY 267
           TK N    L++A++Y G YD++QA + I  K  +GL++  D++++L +QELE+ C   P 
Sbjct: 187 TKGNKGLHLVIALNYGGYYDILQATKSIVNKAMNGLLDVEDINKNLFDQELESKC---PN 243

Query: 268 PDLLIRTS 275
           PDLLIRT 
Sbjct: 244 PDLLIRTG 251

Specifically forms (2Z,6Z)-farnesyl diphosphate (Z,Z-FPP) from dimethylallyl diphosphate (DMAPP) and isopentenyl diphosphate (IPP). Also able to use nerylpyrophosphate (NPP) as substrate. Involved in the biosynthesis of several sesquiterpenes.

Solanum habrochaites (taxid: 62890)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
359478855	311	PREDICTED: dehydrodolichyl diphosphate s	0.741	0.655	0.665	1e-71
147833024	592	hypothetical protein VITISV_028791 [Viti	0.741	0.344	0.665	1e-71
357490673	310	Dehydrodolichyl diphosphate synthase [Me	0.694	0.616	0.654	3e-70
414091093	308	cis-prenyltransferase 4 [Solanum lycoper	0.698	0.623	0.635	4e-70
356553066	322	PREDICTED: dehydrodolichyl diphosphate s	0.694	0.593	0.643	4e-70
297745904	233	unnamed protein product [Vitis vinifera]	0.661	0.781	0.697	1e-68
356498941	312	PREDICTED: dehydrodolichyl diphosphate s	0.727	0.641	0.597	2e-67
395146547	290	hypothetical protein [Linum usitatissimu	0.861	0.817	0.551	9e-67
224104283	234	predicted protein [Populus trichocarpa]	0.661	0.777	0.633	1e-64
414091095	313	cis-prenyltransferase 5 [Solanum lycoper	0.694	0.610	0.596	2e-64

>gi|359478855|ref|XP_002279235.2| PREDICTED: dehydrodolichyl diphosphate synthase 2-like [Vitis vinifera]

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 137/206 (66%), Positives = 163/206 (79%), Gaps = 2/206 (0%)

Query: 70  EEEEREVKFTSDAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKT 129
           EEE REV     A    + L+RE MP HVAVIMDGN RWA  RGLP  SG++AGV+SL+ 
Sbjct: 57  EEEAREV--NERAEGFPDGLRRELMPEHVAVIMDGNVRWAQKRGLPAASGHQAGVRSLRE 114

Query: 130 LVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGD 189
           LV LCCKWGI+VL+VFAFS DNW R E EV FLMSL+E  VK E  +F RE IR+SVIGD
Sbjct: 115 LVGLCCKWGIKVLSVFAFSYDNWSRSEGEVGFLMSLIERVVKAELPNFGREGIRVSVIGD 174

Query: 190 TSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDV 249
            SKLP+ L++L+I+V ETTK N+R Q IVA+SYSGQ D++QAC+ I  KVKDGLIEP D+
Sbjct: 175 LSKLPEQLQKLIIDVEETTKENSRLQFIVALSYSGQCDILQACKNIGYKVKDGLIEPEDI 234

Query: 250 SESLIEQELETNCTEFPYPDLLIRTS 275
           ++SLIEQEL+TNCTEFP+PDLLIRTS
Sbjct: 235 NKSLIEQELQTNCTEFPFPDLLIRTS 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833024|emb|CAN61894.1| hypothetical protein VITISV_028791 [Vitis vinifera]

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 137/206 (66%), Positives = 163/206 (79%), Gaps = 2/206 (0%)

Query: 70  EEEEREVKFTSDAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKT 129
           EEE REV     A    + L+RE MP HVAVIMDGN RWA  RGLP  SG++AGV+SL+ 
Sbjct: 63  EEEAREV--NERAEGFPDGLRRELMPEHVAVIMDGNVRWAQKRGLPAASGHQAGVRSLRE 120

Query: 130 LVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGD 189
           LV LCCKWGI+VL+VFAFS DNW R E EV FLMSL+E  VK E  +F RE IR+SVIGD
Sbjct: 121 LVGLCCKWGIKVLSVFAFSYDNWSRSEGEVGFLMSLIERVVKAELPNFGREGIRVSVIGD 180

Query: 190 TSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDV 249
            SKLP+ L++L+I+V ETTK N+R Q IVA+SYSGQ D++QAC+ I  KVKDGLIEP D+
Sbjct: 181 LSKLPEQLQKLIIDVEETTKENSRLQFIVALSYSGQCDILQACKNIGXKVKDGLIEPEDI 240

Query: 250 SESLIEQELETNCTEFPYPDLLIRTS 275
           ++SLIEQEL+TNCTEFP+PDLLIRTS
Sbjct: 241 NKSLIEQELQTNCTEFPFPDLLIRTS 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357490673|ref|XP_003615624.1| Dehydrodolichyl diphosphate synthase [Medicago truncatula] gi|355516959|gb|AES98582.1| Dehydrodolichyl diphosphate synthase [Medicago truncatula]

 Score =  271 bits (692), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 125/191 (65%), Positives = 157/191 (82%)

Query: 85  LAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTV 144
           L +ELQ + MP+HVAVIMDGN RWA +RGLP  +G+ AG+KSL+ +V LC  WGI+VLTV
Sbjct: 69  LPKELQADLMPKHVAVIMDGNGRWAKMRGLPASAGHVAGIKSLRRMVMLCYSWGIKVLTV 128

Query: 145 FAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINV 204
           FAFS+DNW RP+VEVEFLMSL E  +  E E+  RE I+ISVIGDTSKLPK L+ ++ + 
Sbjct: 129 FAFSTDNWIRPKVEVEFLMSLFERTINSEIEALEREGIQISVIGDTSKLPKSLKSMIASA 188

Query: 205 VETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTE 264
            E+TK N +FQLI+AVSYSG+YDLVQAC+ +A KV+DG+I   D++E++IE+ELETNCTE
Sbjct: 189 EESTKENPKFQLILAVSYSGKYDLVQACKSVAQKVQDGIIHLEDINENIIEKELETNCTE 248

Query: 265 FPYPDLLIRTS 275
           FPYPDLLIRTS
Sbjct: 249 FPYPDLLIRTS 259

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414091093|gb|AFW98428.1| cis-prenyltransferase 4 [Solanum lycopersicum]

 Score =  270 bits (691), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 157/192 (81%)

Query: 84  ALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLT 143
           +L  +L+RE MP+HVA+IMDGNRRWA +RGLPV  GYEAG+++++ ++ELC  WGI VLT
Sbjct: 65  SLPPQLRRELMPKHVALIMDGNRRWAKMRGLPVALGYEAGIRAVRKIIELCGNWGIMVLT 124

Query: 144 VFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVIN 203
           +FAFSSDNW RP+VEV+ LMSL E  + +E E+F RE IRIS+IGD+SKLPK L++L+  
Sbjct: 125 LFAFSSDNWLRPKVEVDILMSLFERALNDELENFAREGIRISIIGDSSKLPKSLQDLIAK 184

Query: 204 VVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCT 263
            V+TTK N+R  L+VAV+YSGQ+D+VQACQ IA KVKD +IE  D++  LIEQEL+TNC 
Sbjct: 185 AVKTTKENSRLHLVVAVNYSGQHDVVQACQTIAQKVKDDIIETKDINSFLIEQELQTNCI 244

Query: 264 EFPYPDLLIRTS 275
           +FP PDLLIRTS
Sbjct: 245 DFPCPDLLIRTS 256

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553066|ref|XP_003544879.1| PREDICTED: dehydrodolichyl diphosphate synthase 2-like [Glycine max]

 Score =  270 bits (691), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 123/191 (64%), Positives = 156/191 (81%)

Query: 85  LAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTV 144
           L  EL  E MP+HVAVIMDGN RWA ++GLP  +G++AGV+SL+ +V LCC WGI+VLTV
Sbjct: 80  LPAELAAEMMPKHVAVIMDGNGRWAKVKGLPPSAGHQAGVQSLRKMVRLCCSWGIKVLTV 139

Query: 145 FAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINV 204
           FAFS+DNW RP+VEV+FLM L E  +  E ++F RE IRISVIGD+S+LP+ L+ ++ + 
Sbjct: 140 FAFSTDNWVRPKVEVDFLMRLFERTINSEVQTFKREGIRISVIGDSSRLPESLKRMIASA 199

Query: 205 VETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTE 264
            E TK N+RFQLIVAV YSG+YD+VQAC+ +A KVKDG I  +D++E++IEQELETNCTE
Sbjct: 200 EEDTKQNSRFQLIVAVGYSGKYDVVQACKSVAKKVKDGHIHLDDINENIIEQELETNCTE 259

Query: 265 FPYPDLLIRTS 275
           FPYPDLLIRTS
Sbjct: 260 FPYPDLLIRTS 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745904|emb|CBI15960.3| unnamed protein product [Vitis vinifera]

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 127/182 (69%), Positives = 151/182 (82%)

Query: 94  MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF 153
           MP HVAVIMDGN RWA  RGLP  SG++AGV+SL+ LV LCCKWGI+VL+VFAFS DNW 
Sbjct: 1   MPEHVAVIMDGNVRWAQKRGLPAASGHQAGVRSLRELVGLCCKWGIKVLSVFAFSYDNWS 60

Query: 154 RPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213
           R E EV FLMSL+E  VK E  +F RE IR+SVIGD SKLP+ L++L+I+V ETTK N+R
Sbjct: 61  RSEGEVGFLMSLIERVVKAELPNFGREGIRVSVIGDLSKLPEQLQKLIIDVEETTKENSR 120

Query: 214 FQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIR 273
            Q IVA+SYSGQ D++QAC+ I  KVKDGLIEP D+++SLIEQEL+TNCTEFP+PDLLIR
Sbjct: 121 LQFIVALSYSGQCDILQACKNIGYKVKDGLIEPEDINKSLIEQELQTNCTEFPFPDLLIR 180

Query: 274 TS 275
           TS
Sbjct: 181 TS 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498941|ref|XP_003518304.1| PREDICTED: dehydrodolichyl diphosphate synthase 2-like [Glycine max]

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/201 (59%), Positives = 161/201 (80%), Gaps = 1/201 (0%)

Query: 76  VKFTSDAP-ALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELC 134
           V F  ++P     EL  E MP+HVAVIMDGN RWA ++GLP  +G++AGV+SL+ +V LC
Sbjct: 60  VSFAGESPDPFPAELAAEMMPKHVAVIMDGNGRWAKVKGLPPSAGHQAGVQSLRRMVRLC 119

Query: 135 CKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLP 194
             WGI+VLTVFAFS+DNW RP++E +FLM L E+ +  E ++F RE I+ISVIGD+SKLP
Sbjct: 120 SSWGIKVLTVFAFSTDNWVRPKLEFDFLMRLFETTINSEVQAFKREGIQISVIGDSSKLP 179

Query: 195 KCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLI 254
           + L+ ++++V E TK+N+R QLIVA+SYSG+YD+VQAC+ +A KVKD  +  +D++E++I
Sbjct: 180 ESLKRMIVSVEEDTKHNSRLQLIVALSYSGKYDVVQACKSVAKKVKDDHLHLDDINENII 239

Query: 255 EQELETNCTEFPYPDLLIRTS 275
           EQELETNCTEFPYPDLLIRTS
Sbjct: 240 EQELETNCTEFPYPDLLIRTS 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395146547|gb|AFN53700.1| hypothetical protein [Linum usitatissimum]

 Score =  259 bits (662), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 135/245 (55%), Positives = 179/245 (73%), Gaps = 8/245 (3%)

Query: 32  LASHVCPSELLSIRKRPGSACAATTQ-HRRYLLFPAEEEEEEEREVKFTSDAPALAEELQ 90
           L+ H  P+ +   +K P +A A++ Q  RR ++  A + E+ ++  K       L E L+
Sbjct: 2   LSLHYFPNRIPE-QKCPTAAAASSGQLQRRRVVAKAWQLEKRKKNKK------ELPEGLR 54

Query: 91  RESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSD 150
            + +PRHVAVIMDGN RWA  RGL  G+G+EAGV+SLK +V LC +WGI VLTVFAFS+D
Sbjct: 55  EDLIPRHVAVIMDGNGRWAKQRGLVAGAGHEAGVRSLKEMVRLCIQWGISVLTVFAFSTD 114

Query: 151 NWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKN 210
           NW RP+VEV+FLMSL E  ++ E E  +R+ +RISVIGD+SKL   L +L+ +V E TKN
Sbjct: 115 NWIRPKVEVDFLMSLFERALRTELEDIVRQGVRISVIGDSSKLSDSLLDLIHDVEERTKN 174

Query: 211 NTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDL 270
           N+   L+VAVSYSG+YD+VQACQ IA +VKDG+IE +D++ESLIE+ELET  T+FP PDL
Sbjct: 175 NSNLHLMVAVSYSGKYDVVQACQSIACQVKDGVIELDDINESLIEKELETKRTKFPSPDL 234

Query: 271 LIRTS 275
           LIRTS
Sbjct: 235 LIRTS 239

Source: Linum usitatissimum

Species: Linum usitatissimum

Genus: Linum

Family: Linaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104283|ref|XP_002313383.1| predicted protein [Populus trichocarpa] gi|222849791|gb|EEE87338.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 116/183 (63%), Positives = 148/183 (80%), Gaps = 1/183 (0%)

Query: 94  MPRHVAVIMDGNRRWAHLRG-LPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNW 152
           MPRHVAVIMDGN RWA  RG + + +G+EAG +SL+ LVELCC WG+RVLTVFAFS DNW
Sbjct: 1   MPRHVAVIMDGNARWARQRGFIALSAGHEAGARSLRELVELCCDWGVRVLTVFAFSYDNW 60

Query: 153 FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNT 212
            RP+VEV+FLMSL E  +K E ++F+R+  R+S IGD+S+L + L++L+ +V E TK+N+
Sbjct: 61  IRPKVEVDFLMSLFERMLKSELDNFVRQGARVSTIGDSSRLSESLKKLISDVEEKTKDNS 120

Query: 213 RFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLI 272
           R  LIVAVSYSG+YD+ QAC+ IA KVKDG ++  D+ ESL+EQELETNC E+P PDLLI
Sbjct: 121 RLHLIVAVSYSGKYDVTQACKSIAQKVKDGTVQLEDIDESLLEQELETNCAEYPCPDLLI 180

Query: 273 RTS 275
           RTS
Sbjct: 181 RTS 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414091095|gb|AFW98429.1| cis-prenyltransferase 5 [Solanum lycopersicum]

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 145/191 (75%)

Query: 85  LAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTV 144
           L  EL RE MP+H+AVIMDGNRRWA  RGLPV  GY AG++ L+  V+L   WGI  LT+
Sbjct: 71  LPTELSRELMPKHIAVIMDGNRRWAKRRGLPVALGYAAGIRVLRNFVKLSYNWGISALTL 130

Query: 145 FAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINV 204
           FAFSS+NWFRP+ EV+ LM L +  +K+E E+  R  IR+S+IGD S+LPK L++L+   
Sbjct: 131 FAFSSENWFRPKAEVDLLMGLFDKVLKDELENLARTGIRLSIIGDASQLPKSLQDLIDKA 190

Query: 205 VETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTE 264
           V  TK N+R  ++VA++YSGQYD+VQACQ IA +VKDG IEP D++  L+EQEL+T CTE
Sbjct: 191 VMATKANSRLHILVAINYSGQYDVVQACQTIAQRVKDGNIEPEDINSLLVEQELQTKCTE 250

Query: 265 FPYPDLLIRTS 275
           FP PDLLIRTS
Sbjct: 251 FPSPDLLIRTS 261

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
TAIR|locus:2178823	310	cPT4 "cis-prenyltransferase 4"	0.727	0.645	0.613	4.2e-63
TAIR|locus:2178838	302	cPT5 "cis -prenyltransferase 5	0.687	0.625	0.534	3.7e-48
TAIR|locus:505006701	289	cPT6 "cis-prenyltransferase 6"	0.687	0.653	0.513	8.8e-47
TAIR|locus:505006702	302	AT5G58784 [Arabidopsis thalian	0.672	0.612	0.497	2.4e-44
TAIR|locus:2046867	303	CPT "cis-prenyltransferase" [A	0.68	0.617	0.478	8.1e-44
TIGR_CMR|CHY_1781	255	CHY_1781 "undecaprenyl diphosp	0.676	0.729	0.414	5.5e-38
TAIR|locus:2046857	253	AT2G23400 [Arabidopsis thalian	0.632	0.687	0.455	7.2e-36
TIGR_CMR|CBU_1382	237	CBU_1382 "undecaprenyl diphosp	0.643	0.746	0.421	1.2e-33
TIGR_CMR|SPO_1665	243	SPO_1665 "undecaprenyl diphosp	0.658	0.744	0.415	3.2e-33
UNIPROTKB|Q9KPV6	250	uppS "Ditrans,polycis-undecapr	0.672	0.74	0.385	4.1e-33

TAIR|locus:2178823 cPT4 "cis-prenyltransferase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 124/202 (61%), Positives = 154/202 (76%)

Query:    76 VKFTS--DAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVEL 133
             V FT+  +   L EEL  E MP+HVA+IMDGN RWA  RGL    G+ AGV++LK +VEL
Sbjct:    57 VSFTAAEEEETLPEELHAELMPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVEL 116

Query:   134 CCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKL 193
             C KWGI+VLTVFAFS+DNW RP +E++FL SL E  +K E ++  +  +RIS+IGD+SKL
Sbjct:   117 CGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSLKTEFQNLAKNNVRISIIGDSSKL 176

Query:   194 PKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESL 253
             PK L  ++  V E TKNNTR QLIVAV YSG+YD++QAC+ IA +VKDG IE  ++ E L
Sbjct:   177 PKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEIDERL 236

Query:   254 IEQELETNCTEFPYPDLLIRTS 275
             IE+ELETNCTEFPYPDLLIRTS
Sbjct:   237 IEEELETNCTEFPYPDLLIRTS 258

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0019408 "dolichol biosynthetic process" evidence=IGI

GO:0045547 "dehydrodolichyl diphosphate synthase activity" evidence=IGI

GO:0009507 "chloroplast" evidence=IDA

GO:0006744 "ubiquinone biosynthetic process" evidence=RCA

TAIR|locus:2178838 cPT5 "cis -prenyltransferase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 101/189 (53%), Positives = 133/189 (70%)

Query:    87 EELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFA 146
             EELQRE MPRHVAVIMDGNRRWA   GL    G+EAG K L    ELC K GI  ++ FA
Sbjct:    63 EELQRELMPRHVAVIMDGNRRWAKRAGLLTSQGHEAGAKRLIEFSELCFKLGIHTVSAFA 122

Query:   147 FSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVE 206
             FS++NW R ++EV+ LMSL++  +K + + F RE  R+SVIG+ +K+P+ L   V  + E
Sbjct:   123 FSTENWGRHKIEVKCLMSLIQHYLKSKIQYFQREETRVSVIGNLTKIPESLLRTVQEIEE 182

Query:   207 TTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFP 266
              T++  +  LI+A+ YSG+ D+++AC+ I  K + GLI   DV E+LIE+EL TNCTEFP
Sbjct:   183 ATRSYKKKHLILAIDYSGRLDILRACKSIVKKSEKGLIREEDVDEALIERELLTNCTEFP 242

Query:   267 YPDLLIRTS 275
              PDLLIRTS
Sbjct:   243 SPDLLIRTS 251

GO:0005576 "extracellular region" evidence=ISM

GO:0019408 "dolichol biosynthetic process" evidence=IGI;RCA

GO:0045547 "dehydrodolichyl diphosphate synthase activity" evidence=IGI

GO:0002094 "polyprenyltransferase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0050267 "rubber cis-polyprenylcistransferase activity" evidence=IGI

TAIR|locus:505006701 cPT6 "cis-prenyltransferase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 97/189 (51%), Positives = 130/189 (68%)

Query:    87 EELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFA 146
             +ELQRE MPRHVAVIMDGNRRWA   GL    GYEAG K L    +LC K GI  ++ FA
Sbjct:    50 KELQRELMPRHVAVIMDGNRRWAKQTGLLTSQGYEAGAKRLLEFADLCFKLGINTVSAFA 109

Query:   147 FSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVE 206
             FS++NW R ++EV+ LM L +  +K + + F  + IR+SVIG+ +K+P+ L   V  + E
Sbjct:   110 FSTENWGRHKIEVKCLMYLFQRYLKSKIQFFQSKEIRVSVIGNLAKIPESLLRTVHELEE 169

Query:   207 TTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFP 266
              TK+  +  LI+A+ YSG++D++ AC+ I  K + GLI   DV E+L E+EL+T CTEFP
Sbjct:   170 ATKSYKKKHLILAIDYSGRFDILGACKNIVKKSEQGLIREEDVDETLFERELQTRCTEFP 229

Query:   267 YPDLLIRTS 275
              PDLLIRTS
Sbjct:   230 SPDLLIRTS 238

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0019408 "dolichol biosynthetic process" evidence=IGI;RCA

GO:0045547 "dehydrodolichyl diphosphate synthase activity" evidence=IGI

TAIR|locus:505006702 AT5G58784 [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 92/185 (49%), Positives = 127/185 (68%)

Query:    91 RESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSD 150
             R  MP+HVAVI+DGNRRWA  RGL    G+EAG + L    + C   G   +++FAFS++
Sbjct:    67 RNIMPKHVAVILDGNRRWAEKRGLGTSEGHEAGARRLMENAKDCFAMGTNTISLFAFSTE 126

Query:   151 NWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKN 210
             NW RPE EV+ LM+L E  +  +      ++I+ISVIG+ +KLP+ L  L+  V E TK+
Sbjct:   127 NWERPEDEVKCLMALFEKYLASDMPYLRSDKIKISVIGNRTKLPESLLGLIEEVEEATKS 186

Query:   211 NTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDL 270
                  LI+A+ YSG+YD++QAC+ +A KVKDGLI+  D++E  +E+EL T C+EFP PDL
Sbjct:   187 YEGKNLIIAIDYSGRYDILQACKSLANKVKDGLIQVEDINEKAMEKELLTKCSEFPNPDL 246

Query:   271 LIRTS 275
             LIRTS
Sbjct:   247 LIRTS 251

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0019408 "dolichol biosynthetic process" evidence=IGI;RCA

GO:0045547 "dehydrodolichyl diphosphate synthase activity" evidence=IGI

TAIR|locus:2046867 CPT "cis-prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 90/188 (47%), Positives = 128/188 (68%)

Query:    89 LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFS 148
             LQRE MPRHVA I+DGNRRWA   GL    G+EAG K L  + ELC + G+  ++ FAFS
Sbjct:    65 LQRELMPRHVAFILDGNRRWAKRAGLTTSQGHEAGAKRLIDIAELCFELGVHTVSAFAFS 124

Query:   149 SDNWFRPEVEVEFLMSLLES-GVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVET 207
             ++NW R ++E++ LMSL++    K   + F R  +R+SVIG+ +K+P+ L + +  + E 
Sbjct:   125 TENWGRDKIEIDNLMSLIQHYRNKSNIKFFHRSEVRVSVIGNKTKIPESLLKEIHEIEEA 184

Query:   208 TKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPY 267
             TK      LI+AV YSG++D++ AC+ +  K + GLI   DV E+LIE+EL TNC++FP 
Sbjct:   185 TKGYKNKHLIMAVDYSGKFDIMHACKSLVKKSEKGLIREEDVDEALIERELLTNCSDFPS 244

Query:   268 PDLLIRTS 275
             PDL+IRTS
Sbjct:   245 PDLMIRTS 252

GO:0005576 "extracellular region" evidence=ISM

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0019408 "dolichol biosynthetic process" evidence=IGI;RCA

GO:0045547 "dehydrodolichyl diphosphate synthase activity" evidence=IGI

TIGR_CMR|CHY_1781 CHY_1781 "undecaprenyl diphosphate synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 78/188 (41%), Positives = 125/188 (66%)

Query:    88 ELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAF 147
             +L    MPRH+A+IMDGN RWA  RG+P   G+ AGV++++ +V+ C K  +  LT++AF
Sbjct:    17 DLDFRKMPRHIAIIMDGNGRWAKKRGMPRYFGHRAGVETVRRVVKFCAKLNVPYLTLYAF 76

Query:   148 SSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVET 207
             S++NW RP+ EV  LM+LL   +++E +   RE +R++VIG+ S+LP+     +   +E 
Sbjct:    77 STENWRRPQEEVNVLMNLLVEYIEKETDELNREGVRLTVIGEISELPEKARIALAQGIEK 136

Query:   208 TKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPY 267
             T +N+R  LI+A++Y G+ ++V+A ++IA ++K+G + P  + E +    L T   EFP 
Sbjct:   137 TCHNSRLNLILALNYGGRREIVEAARKIAYEIKNGKLSPEQIDEKVFANYLYTK--EFPD 194

Query:   268 PDLLIRTS 275
             PDLLIR S
Sbjct:   195 PDLLIRPS 202

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TAIR|locus:2046857 AT2G23400 [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 86/189 (45%), Positives = 122/189 (64%)

Query:    87 EELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFA 146
             EELQRE MPRHV+ I+DGNRRWA   GL    G+EAG K +  + E+C + GI  ++ FA
Sbjct:    29 EELQRELMPRHVSFILDGNRRWAKRDGLTTAQGHEAGTKRIIEIAEVCFELGIHTVSAFA 88

Query:   147 FSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVE 206
             FS++NW R + EV+ LMSL    +K   + F R+ +R+SVIG+ +K+P+ L + +  + E
Sbjct:    89 FSTENWGRDKFEVKCLMSLFNHYLKSNIQYFQRKEVRVSVIGNKTKIPESLLKEIHEIEE 148

Query:   207 TTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFP 266
              TK  TR    +++S    + LV+       K + GLI   DV E+LIE+EL TNC++FP
Sbjct:   149 ATKA-TR----ISIS---SWHLVK-------KSEKGLIREEDVDEALIERELLTNCSDFP 193

Query:   267 YPDLLIRTS 275
              PDL+IRTS
Sbjct:   194 SPDLMIRTS 202

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0019408 "dolichol biosynthetic process" evidence=IGI;RCA

GO:0045547 "dehydrodolichyl diphosphate synthase activity" evidence=IGI

TIGR_CMR|CBU_1382 CBU_1382 "undecaprenyl diphosphate synthase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 78/185 (42%), Positives = 120/185 (64%)

Query:    94 MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF 153
             +PRHVA++MDGN RWA+ RGLP  +G+ AG K ++ +VE   +  + VLT+FAFS +N  
Sbjct:     2 IPRHVAIVMDGNGRWANRRGLPRVAGHRAGAKVVRRIVEYAAEKPLEVLTLFAFSIENRA 61

Query:   154 RPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213
             RP+ EV FLMSL    +K+  E   +  +++ VIGD  +  K +   +    + TK+NT 
Sbjct:    62 RPQSEVNFLMSLFLDSLKKNTEELHKNNVQLRVIGDHREFDKKMLAQIQTSQDLTKHNTG 121

Query:   214 FQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETN--C-TEFPYPDL 270
              +LI+A++YSG++D++QA QR+A K+K+      +++  L+  EL  N  C ++ P PDL
Sbjct:   122 LKLIIALNYSGRWDILQAVQRMAEKIKN-----QELTSELMSAELFQNYLCLSDLPEPDL 176

Query:   271 LIRTS 275
             LIRTS
Sbjct:   177 LIRTS 181

GO:0008834 "di-trans,poly-cis-decaprenylcistransferase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|SPO_1665 SPO_1665 "undecaprenyl diphosphate synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 76/183 (41%), Positives = 113/183 (61%)

Query:    93 SMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNW 152
             S PRHVA+IMDGN RWA  RG P   G+ AG + ++ +VE C + GI+ LT+FAFS++NW
Sbjct:    11 SGPRHVAIIMDGNGRWAQARGRPRLFGHHAGARRVREVVEACPQLGIKYLTIFAFSTENW 70

Query:   153 FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNT 212
              R +VEV  LMSL    + +E  +     +R+  IGD  +L   L  L+  + E T+ N 
Sbjct:    71 KRTQVEVAGLMSLFRRYIAKETRALHARGVRVRFIGDRVRLDAKLIALMDTLEEQTREND 130

Query:   213 RFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLI 272
               QL +A++Y G+ ++ +A +R+A  V +G ++P DV E  + + L+T     P PDL+I
Sbjct:   131 GVQLTIALNYGGRDEVARATRRLARDVAEGRLKPEDVDEETLPRYLDTRV--LPDPDLVI 188

Query:   273 RTS 275
             RTS
Sbjct:   189 RTS 191

GO:0005737 "cytoplasm" evidence=ISS

GO:0008834 "di-trans,poly-cis-decaprenylcistransferase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

UNIPROTKB|Q9KPV6 uppS "Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 72/187 (38%), Positives = 115/187 (61%)

Query:    89 LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFS 148
             L ++ +P+H+AVIMDGN RWA  +G P   G++ GV +++  +    + GI+ +T+FAFS
Sbjct:     6 LSQDVLPKHIAVIMDGNGRWAKAQGKPRVFGHKNGVAAVRKTISTSARLGIKAVTLFAFS 65

Query:   149 SDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETT 208
             S+NW RPE EV  LM L  + +  E +   +  +R+ VIGD S+  + L+  +    + T
Sbjct:    66 SENWRRPEEEVGVLMELFMTVLSTEIKKLHKNNLRLRVIGDKSRFSERLQTKIAQAEQLT 125

Query:   209 KNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYP 268
              +NT   + +A +Y GQ+D++QA Q +A KV  G ++P+D+ E + +Q L     + P  
Sbjct:   126 ASNTGMVVNIAANYGGQWDILQATQALAEKVTQGELQPSDIDEDVFKQHL--TMADLPDV 183

Query:   269 DLLIRTS 275
             DLLIRTS
Sbjct:   184 DLLIRTS 190

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1.31	0.737
3rd Layer	2.5.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024111001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (311 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00014674001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (371 aa)	•					•	•		0.950
	GSVIVG00019758001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (285 aa)	•					•	•		0.950
	GSVIVG00025000001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (368 aa)	•					•	•		0.948
	GSVIVG00016085001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (471 aa)	•				•		•		0.934
	GSVIVG00034853001	SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (250 aa)	•						•		0.923
	GSVIVG00033429001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (341 aa)						•	•		0.919
	GSVIVG00036188001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence (Chromosome undetermine [...] (341 aa)						•	•		0.911
	rps2	ribosomal protein S2 (180 aa)	•						•		0.908
	GSVIVG00027313001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (298 aa)						•			0.899
	GSVIVG00020546001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (258 aa)	•						•		0.850

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	275
PRK14831	249	PRK14831, PRK14831, undecaprenyl pyrophosphate syn	6e-73
cd00475	221	cd00475, CIS_IPPS, Cis (Z)-Isoprenyl Diphosphate S	4e-72
pfam01255	222	pfam01255, Prenyltransf, Putative undecaprenyl dip	1e-71
COG0020	245	COG0020, UppS, Undecaprenyl pyrophosphate synthase	5e-71
TIGR00055	226	TIGR00055, uppS, undecaprenyl diphosphate synthase	6e-66
PRK14830	251	PRK14830, PRK14830, undecaprenyl pyrophosphate syn	7e-64
PRK14836	253	PRK14836, PRK14836, undecaprenyl pyrophosphate syn	9e-57
PRK14834	249	PRK14834, PRK14834, undecaprenyl pyrophosphate syn	1e-55
PRK14832	253	PRK14832, PRK14832, undecaprenyl pyrophosphate syn	1e-54
PRK14838	242	PRK14838, PRK14838, undecaprenyl pyrophosphate syn	1e-50
PRK14840	250	PRK14840, PRK14840, undecaprenyl pyrophosphate syn	4e-44
PRK14833	233	PRK14833, PRK14833, undecaprenyl pyrophosphate syn	5e-43
PRK14839	239	PRK14839, PRK14839, undecaprenyl pyrophosphate syn	2e-40
PRK10240	229	PRK10240, PRK10240, undecaprenyl pyrophosphate syn	1e-37
PRK14829	243	PRK14829, PRK14829, undecaprenyl pyrophosphate syn	2e-37
PRK14841	233	PRK14841, PRK14841, undecaprenyl pyrophosphate syn	3e-35
PRK14837	230	PRK14837, PRK14837, undecaprenyl pyrophosphate syn	2e-32
PRK14827	296	PRK14827, PRK14827, undecaprenyl pyrophosphate syn	2e-27
PRK14835	275	PRK14835, PRK14835, undecaprenyl pyrophosphate syn	3e-27
PRK14828	256	PRK14828, PRK14828, undecaprenyl pyrophosphate syn	3e-25
PRK14842	241	PRK14842, PRK14842, undecaprenyl pyrophosphate syn	2e-24
PTZ00349	322	PTZ00349, PTZ00349, dehydrodolichyl diphosphate sy	5e-18

>gnl|CDD|184841 PRK14831, PRK14831, undecaprenyl pyrophosphate synthase; Provisional

 Score =  223 bits (571), Expect = 6e-73
 Identities = 87/197 (44%), Positives = 119/197 (60%), Gaps = 2/197 (1%)

Query: 79  TSDAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWG 138
            +    L  +L  + +P+HVAVIMDGN RWA  RGLP   G+  GV +LK L+  C  WG
Sbjct: 5   PTKLQDLPADLDPQRLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWG 64

Query: 139 IRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLE 198
           I  LT +AFS++NW RP  EV FLM+L E  ++ E E  + E +RI  +GD   LPK L+
Sbjct: 65  IGALTAYAFSTENWSRPLEEVNFLMTLFERVLRRELEELMEENVRIRFVGDLDPLPKSLQ 124

Query: 199 ELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQEL 258
           E +    E TKNN      V  +Y G+ ++VQA + IA +V+ G ++P+++ E+L E EL
Sbjct: 125 EEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAIAQQVQQGELDPSEIDENLFESEL 184

Query: 259 ETNCTEFPYPDLLIRTS 275
            T       PDLLIRTS
Sbjct: 185 YT--AGIKDPDLLIRTS 199

Length = 249

>gnl|CDD|238265 cd00475, CIS_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates

 Score =  220 bits (563), Expect = 4e-72
 Identities = 78/181 (43%), Positives = 117/181 (64%), Gaps = 2/181 (1%)

Query: 95  PRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFR 154
           P+HVA IMDGNRRWA  RG+    G++AG + L+ ++  C + G++ +T++AFS++NW R
Sbjct: 1   PKHVAFIMDGNRRWAKQRGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKR 60

Query: 155 PEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRF 214
           P+ EV+FLM L    ++   +   +  +RI +IGD S LP+ L++ +    E TKNNT F
Sbjct: 61  PKEEVDFLMELFRDVLRRILKELEKLGVRIRIIGDLSLLPESLQKEIKKAEEATKNNTGF 120

Query: 215 QLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIRT 274
            L VA +Y G+ +++ A + IA KVK G + P D+ ES + + L T+    P PDLLIRT
Sbjct: 121 TLNVAFNYGGRQEIIHAVREIAEKVKAGKLTPEDIDESTLNKHLYTHD--SPDPDLLIRT 178

Query: 275 S 275
           S
Sbjct: 179 S 179

A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity. Length = 221

>gnl|CDD|216392 pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase

 Score =  218 bits (559), Expect = 1e-71
 Identities = 80/175 (45%), Positives = 118/175 (67%), Gaps = 2/175 (1%)

Query: 101 IMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVE 160
           IMDGNRRWA  RGLP   G+ AG ++++ ++E C + GI+ LT++AFS++NW RP+ EV+
Sbjct: 1   IMDGNRRWAKKRGLPRTEGHRAGAEAVREILEWCLELGIKYLTLYAFSTENWKRPKEEVD 60

Query: 161 FLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAV 220
           FLM LLE  ++   E   +  +R+ VIGD S LP+ L + + +  E TKNNT   L +A+
Sbjct: 61  FLMELLERKLRRLLEDLHKNGVRVRVIGDLSLLPEDLRKAIEDAEEATKNNTGLTLNIAL 120

Query: 221 SYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIRTS 275
           +Y G+ ++V A +R+A  V DG + P D+ E +IE+ L T+  + P PDLLIRTS
Sbjct: 121 NYGGRDEIVDAVKRLARDVADGKLSPEDIDEEVIEKYLYTS--DLPDPDLLIRTS 173

Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase. Length = 222

>gnl|CDD|223099 COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]

 Score =  218 bits (557), Expect = 5e-71
 Identities = 90/194 (46%), Positives = 125/194 (64%), Gaps = 3/194 (1%)

Query: 82  APALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRV 141
            P    EL    +PRHVA+IMDGNRRWA  RGLP   G++AG K+L+ ++E C + GI+ 
Sbjct: 5   LPLYKREL-PARLPRHVAIIMDGNRRWAKKRGLPRIEGHKAGAKALREILEWCLELGIKY 63

Query: 142 LTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV 201
           LT++AFS++NW RP+ EV FLM L E  ++EE +   +  +RI +IGD S+LP+ + E +
Sbjct: 64  LTLYAFSTENWKRPKEEVSFLMELFEKALREELKKLHKNGVRIRIIGDLSRLPEEVREAI 123

Query: 202 INVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETN 261
               E TKNNT   L +AV+Y G+ ++V A ++IA  V  G + P D+ E LI   L T 
Sbjct: 124 EKAEEKTKNNTGLTLNIAVNYGGRDEIVDAVRKIAEDVAAGKLSPEDIDEELISSHLYT- 182

Query: 262 CTEFPYPDLLIRTS 275
            +  P PDLLIRTS
Sbjct: 183 -SGLPDPDLLIRTS 195

Length = 245

>gnl|CDD|129165 TIGR00055, uppS, undecaprenyl diphosphate synthase

 Score =  204 bits (521), Expect = 6e-66
 Identities = 82/180 (45%), Positives = 114/180 (63%), Gaps = 2/180 (1%)

Query: 96  RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRP 155
           RHVA+IMDGN RWA  +G P   G++AGVKSL+ ++  C   G+  LT++AFS++NW RP
Sbjct: 1   RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRP 60

Query: 156 EVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQ 215
           + EV+FLM L E  +  E +   R  +RI +IGD S L K L+E +    E TKNNT F 
Sbjct: 61  KEEVDFLMELFEKKLDREVKELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFT 120

Query: 216 LIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIRTS 275
           L +A +Y G+ +++ A ++IA KVK G + P D+ E  + + L T     P  DLLIRTS
Sbjct: 121 LNIAFNYGGRNEILHAVKQIAEKVKSGKLLPEDIDEETLNKHLYTA--NLPPVDLLIRTS 178

This enzyme builds undecaprenyl diphosphate, a molecule that in bacteria is used a carrier in synthesizing cell wall components. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 226

>gnl|CDD|184840 PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional

 Score =  200 bits (510), Expect = 7e-64
 Identities = 79/189 (41%), Positives = 122/189 (64%), Gaps = 2/189 (1%)

Query: 87  EELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFA 146
           EEL + ++P+H+A+IMDGN RWA  R LP  +G++AG+ ++K + +   + G++VLT++A
Sbjct: 15  EELDKGNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYA 74

Query: 147 FSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVE 206
           FS++NW RP+ EV+FLM+L    + +     I   ++++VIGDT +LP+     +   +E
Sbjct: 75  FSTENWKRPKDEVKFLMNLPVEFLDKFVPELIENNVKVNVIGDTDRLPEHTLRALEKAIE 134

Query: 207 TTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFP 266
            TKNNT   L  A++Y G+ ++V A + IA  V DG + P D++E LI   L T     P
Sbjct: 135 KTKNNTGLILNFALNYGGRAEIVSAVKEIAKDVLDGKLNPEDITEELISNYLMTK--GLP 192

Query: 267 YPDLLIRTS 275
            PDLLIRTS
Sbjct: 193 DPDLLIRTS 201

Length = 251

>gnl|CDD|237831 PRK14836, PRK14836, undecaprenyl pyrophosphate synthase; Provisional

 Score =  182 bits (463), Expect = 9e-57
 Identities = 80/184 (43%), Positives = 115/184 (62%), Gaps = 2/184 (1%)

Query: 92  ESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDN 151
           E++PRH+A+IMDGN RWA  RG P   G+ AGV++++  +E C + GI +LT+FAFSS+N
Sbjct: 12  ENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSEN 71

Query: 152 WFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNN 211
           W RP  EV  LM L    +  E +   R  IR+  IGD S+L   L+E +      T +N
Sbjct: 72  WLRPADEVSALMELFLKALDREVDKLHRNGIRVRFIGDRSRLSPKLQERMEYAERLTASN 131

Query: 212 TRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLL 271
           TR  L +AVSY G++D+V A + +A +V  G + P+++ E+L+ Q L     + P PDL 
Sbjct: 132 TRLILSLAVSYGGRWDIVTAARALAREVAAGKLAPDEIDEALLAQHLAL--ADLPEPDLF 189

Query: 272 IRTS 275
           IRTS
Sbjct: 190 IRTS 193

Length = 253

>gnl|CDD|237829 PRK14834, PRK14834, undecaprenyl pyrophosphate synthase; Provisional

 Score =  179 bits (455), Expect = 1e-55
 Identities = 76/194 (39%), Positives = 115/194 (59%), Gaps = 2/194 (1%)

Query: 82  APALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRV 141
           A    +E    S+PRHVA+IMDGN RWA  RGLP  +G+ AGV++L+ +V    + GI  
Sbjct: 2   AAPAKDESDAMSVPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGY 61

Query: 142 LTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV 201
           LT+FAFSS+NW RP  EV  L  LL   ++ +     R  +R+ VIG+ + L   +  L+
Sbjct: 62  LTLFAFSSENWSRPASEVSDLFGLLRLFIRRDLAELHRNGVRVRVIGERAGLEADICALL 121

Query: 202 INVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETN 261
               E T+NNT   L++A +Y  + ++ +A +R+A +V +G ++P  +    I   L+T 
Sbjct: 122 NEAEELTRNNTGLNLVIAFNYGSRDEIARAVRRLAREVAEGRLDPASIDAETISANLDT- 180

Query: 262 CTEFPYPDLLIRTS 275
             + P PDL+IRTS
Sbjct: 181 -ADIPDPDLIIRTS 193

Length = 249

>gnl|CDD|237827 PRK14832, PRK14832, undecaprenyl pyrophosphate synthase; Provisional

 Score =  177 bits (449), Expect = 1e-54
 Identities = 85/195 (43%), Positives = 120/195 (61%), Gaps = 2/195 (1%)

Query: 81  DAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIR 140
           D      +L  + +P+H+AVIMDGN RWA  +GLP  +G+  G ++LK L+  C  WGI+
Sbjct: 5   DYVMRPPDLDPQKIPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIK 64

Query: 141 VLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEEL 200
            LT +AFS++NW RP  EV+FLM L E  ++ E     RE +RIS IGD S LPK L+  
Sbjct: 65  ALTAYAFSTENWQRPIEEVDFLMLLFERLLRRELAQMHREGVRISFIGDLSALPKSLQTE 124

Query: 201 VINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELET 260
           +   +  T NN      VAV+Y  + ++ +AC+++A  V+ G +  + V+E L+EQ L T
Sbjct: 125 MERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVAELVQQGKLSADAVNEQLVEQHLYT 184

Query: 261 NCTEFPYPDLLIRTS 275
             T  P PDLLIRTS
Sbjct: 185 ADT--PPPDLLIRTS 197

Length = 253

>gnl|CDD|184846 PRK14838, PRK14838, undecaprenyl pyrophosphate synthase; Provisional

 Score =  165 bits (420), Expect = 1e-50
 Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 4/190 (2%)

Query: 85  LAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTV 144
             E++    +P+H+A+IMDGN RWA  RG     G++AG +++  + E   + G++ LT+
Sbjct: 1   YKEQIDMNRIPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTL 60

Query: 145 FAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINV 204
           + FS++NW RP  EV  LMSLL   +  E+E+F++  IR  +IGD +KLP+ ++E +   
Sbjct: 61  YTFSTENWNRPSDEVAALMSLLLDSI--EEETFMKNNIRFRIIGDIAKLPEEVQERLNEC 118

Query: 205 VETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTE 264
            E T  NT   L++A+SYS ++++ +A ++IA  V++G + P +++E  I + L TN   
Sbjct: 119 EEHTAKNTGMCLVLALSYSSRWEITEATRQIATLVQNGELNPEEITEESISEHLTTNF-- 176

Query: 265 FPYPDLLIRT 274
            P PDLLIRT
Sbjct: 177 MPDPDLLIRT 186

Length = 242

>gnl|CDD|173301 PRK14840, PRK14840, undecaprenyl pyrophosphate synthase; Provisional

 Score =  149 bits (378), Expect = 4e-44
 Identities = 73/190 (38%), Positives = 109/190 (57%), Gaps = 6/190 (3%)

Query: 89  LQRESMPRHVAVIMDGNRRWAH----LRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTV 144
              +S+PRHVA+IMDGNRRW             SG+  G KSL  +V+     GI VLT+
Sbjct: 13  PSLQSLPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTL 72

Query: 145 FAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINV 204
           FAFS++N+ R + EV  L SL  S +  +        IR+  IGD SKLP+ L+  +   
Sbjct: 73  FAFSTENFSRSKEEVAELFSLFNSQLDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQA 132

Query: 205 VETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTE 264
              T + +R +L++A++Y G+ +LV+A +++   + +  I  +D+SE LI   L+T  + 
Sbjct: 133 SSATAHYSRMELVLAINYGGKDELVRAFKKLHQDLANKKISSDDISEELISSYLDT--SG 190

Query: 265 FPYPDLLIRT 274
            P PDLLIRT
Sbjct: 191 LPDPDLLIRT 200

Length = 250

>gnl|CDD|237828 PRK14833, PRK14833, undecaprenyl pyrophosphate synthase; Provisional

 Score =  146 bits (370), Expect = 5e-43
 Identities = 63/185 (34%), Positives = 108/185 (58%), Gaps = 7/185 (3%)

Query: 93  SMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNW 152
           +  +H+A+IMDGN RWA LRG    +G++ GVK+L+ +   C    +  LT++AFS++NW
Sbjct: 3   NTLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENW 62

Query: 153 FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNT 212
            RP+ EV+FLM LL+  +K+E+ +++   IR   IGD     K L + ++ + E T++  
Sbjct: 63  KRPKSEVDFLMKLLKKYLKDERSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSFK 122

Query: 213 RFQLIVAVSYSGQYDLVQACQRI--AMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDL 270
            F  ++A++Y  + ++ +A +++  +     G +E     E  I   L+T   + P  DL
Sbjct: 123 GFTQVLALNYGSKDEISRAFKKLLESPPSHIGELE---SLEEEISNCLDT--ADLPEVDL 177

Query: 271 LIRTS 275
           LIRT 
Sbjct: 178 LIRTG 182

Length = 233

>gnl|CDD|237832 PRK14839, PRK14839, undecaprenyl pyrophosphate synthase; Provisional

 Score =  139 bits (353), Expect = 2e-40
 Identities = 69/190 (36%), Positives = 96/190 (50%), Gaps = 14/190 (7%)

Query: 89  LQRESMPR---HVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVF 145
           +Q     R   HVA+IMDGN RWA  RGLP  +G+ AGV++++ +VE     GI  LT++
Sbjct: 1   MQSSLDRRSGLHVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLY 60

Query: 146 AFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVV 205
           AFSSDNW RP  EV  LM LL + ++ E E   R  +R++VIG   +LP  + E +    
Sbjct: 61  AFSSDNWRRPAAEVGGLMRLLRAYLRNETERLARNGVRLTVIGRRDRLPDGIPEAIARAE 120

Query: 206 ETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEF 265
             T    R  L +AV YS +  ++ A  +           P  +S       L     + 
Sbjct: 121 AATAGGDRLHLRIAVDYSARDAILAAAAKAL--------GPEGLSREAFSDLL---TGDG 169

Query: 266 PYPDLLIRTS 275
              DLLIRT 
Sbjct: 170 GDVDLLIRTG 179

Length = 239

>gnl|CDD|182326 PRK10240, PRK10240, undecaprenyl pyrophosphate synthase; Provisional

 Score =  132 bits (333), Expect = 1e-37
 Identities = 64/173 (36%), Positives = 99/173 (57%), Gaps = 2/173 (1%)

Query: 102 MDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEF 161
           MDGN RWA  +G     G++AG KS++  V      GI  LT++AFSS+NW RP  EV  
Sbjct: 1   MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSA 60

Query: 162 LMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVS 221
           LM L    +  E +S  R  +R+ +IGDTS+    L+E +      T  NT   L +A +
Sbjct: 61  LMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAAN 120

Query: 222 YSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIRT 274
           Y G++D+VQ  +++A +V+ G ++P+ + E ++ Q +  +  E    DL+IRT
Sbjct: 121 YGGRWDIVQGVRQLAEQVQQGNLQPDQIDEEMLNQHICMH--ELAPVDLVIRT 171

Length = 229

>gnl|CDD|237826 PRK14829, PRK14829, undecaprenyl pyrophosphate synthase; Provisional

 Score =  131 bits (332), Expect = 2e-37
 Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 2/193 (1%)

Query: 83  PALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVL 142
           P +  ++ +  +PRH+AV+MDGN RWA  RGL    G++AG   L  +V    + G+  L
Sbjct: 3   PLIPPDIPKNKLPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYL 62

Query: 143 TVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVI 202
           +++ FS++NW R   EV FLM      +   +E      +R+   G   +L K + + + 
Sbjct: 63  SLYTFSTENWKRSPDEVRFLMGFSRDVIHRRREQMDEWGVRVRWSGRRPRLWKSVIDELE 122

Query: 203 NVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNC 262
              E TKNNT   L+  V+Y G+ ++  A   IA +V+DG I  + V+E +I   L    
Sbjct: 123 AAEELTKNNTTMDLVFCVNYGGRAEIADAAAAIAREVRDGKISGDRVTEKMISDHLYN-- 180

Query: 263 TEFPYPDLLIRTS 275
            + P  DL +RTS
Sbjct: 181 PDMPDVDLFLRTS 193

Length = 243

>gnl|CDD|173302 PRK14841, PRK14841, undecaprenyl pyrophosphate synthase; Provisional

 Score =  126 bits (317), Expect = 3e-35
 Identities = 71/182 (39%), Positives = 106/182 (58%), Gaps = 4/182 (2%)

Query: 94  MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF 153
           +P+HVA+IMDGN RWA  RGLP   G++ G + L   V+   + GI+ LT F+FS++NW 
Sbjct: 3   IPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWK 62

Query: 154 RPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213
           RP+ EVEFLM L    +  E E   RER+R+ ++G    LP+ + +    V E TK   R
Sbjct: 63  RPKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDR 122

Query: 214 FQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIR 273
             L++A +Y G+ +++ A + I   V  G  +  +++E    Q L     + P PDL+IR
Sbjct: 123 MTLVIAFNYGGRREILDAVESILKDVSQG--KKIELTEETFRQYLYL--PDVPDPDLIIR 178

Query: 274 TS 275
           TS
Sbjct: 179 TS 180

Length = 233

>gnl|CDD|173298 PRK14837, PRK14837, undecaprenyl pyrophosphate synthase; Provisional

 Score =  118 bits (298), Expect = 2e-32
 Identities = 63/187 (33%), Positives = 104/187 (55%), Gaps = 8/187 (4%)

Query: 89  LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFS 148
           + + S+P HV +IMDGNRRWA  +GL    G++ G+K  K +V+   K GI+ L+++ FS
Sbjct: 1   MNKNSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFS 60

Query: 149 SDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETT 208
           ++NW R + E+E LM L+   +  E   + +  I+I V GD   L + +++ + + +  T
Sbjct: 61  TENWNRTDSEIEHLMFLIADYLSSEFNFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFT 120

Query: 209 KNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKD-GLIEPNDVSESLIEQELETNCTEFPY 267
           KN     L +A++Y G+ ++V+A ++      D   +  N  S+ L   EL       P 
Sbjct: 121 KNFDGLVLNLAINYGGRNEIVRAVKKFLSSGLDLETLNENVFSKFLDNPEL-------PD 173

Query: 268 PDLLIRT 274
            DLLIRT
Sbjct: 174 LDLLIRT 180

Length = 230

>gnl|CDD|173288 PRK14827, PRK14827, undecaprenyl pyrophosphate synthase; Provisional

 Score =  106 bits (267), Expect = 2e-27
 Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 4/193 (2%)

Query: 84  ALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLT 143
           A A  +  + +P HVA++MDGN RWA  RGL    G++ G   +  +     + GI+ L+
Sbjct: 57  AAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLS 116

Query: 144 VFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPK-CLEELVI 202
           ++AFS++NW R   EV FLM      V+  +++  +  +RI  +G   +L +  + EL I
Sbjct: 117 LYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDNLNKMGVRIRWVGSRPRLWRSVINELAI 176

Query: 203 NVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNC 262
              E TK+N    +   V+Y G+ ++ +A + IA +   G + P  ++ES I + L+   
Sbjct: 177 -AEEMTKSNDVITINYCVNYGGRTEITEATREIAREAAAGRLNPERITESTIARHLQR-- 233

Query: 263 TEFPYPDLLIRTS 275
            + P  DL +RTS
Sbjct: 234 PDIPDVDLFLRTS 246

Length = 296

>gnl|CDD|237830 PRK14835, PRK14835, undecaprenyl pyrophosphate synthase; Provisional

 Score =  106 bits (265), Expect = 3e-27
 Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 8/197 (4%)

Query: 85  LAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTV 144
           L  E++   +PRH+ +I+DGNRR+A   GL    G+E GV+    ++E C + GI  +T+
Sbjct: 32  LEREVKHGKLPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTI 91

Query: 145 FAFSSDNWFRPEVEVEFLMSLLESGVKE--EKESFIRERIRISVIGDTSKLPKCLEELVI 202
           + FS+DN+ R   EVE LM+L E   +           R+R+  IG     P  + E + 
Sbjct: 92  WVFSTDNFSRSPAEVETLMNLFEREARRMAVDPRIHANRVRVRAIGRHDGFPPKVLEALE 151

Query: 203 NVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESL----IEQEL 258
            + E T+ +    L +AV Y G+ ++V A + + ++       P +V+  L    I   L
Sbjct: 152 ELEERTEGHEGMLLNIAVGYGGREEIVDAVKSLLLEAAATGKSPEEVAAELTPEHISAHL 211

Query: 259 ETNCTEFPYPDLLIRTS 275
            T     P PD +IRTS
Sbjct: 212 YT--AGVPDPDFIIRTS 226

Length = 275

>gnl|CDD|237825 PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional

 Score =  100 bits (251), Expect = 3e-25
 Identities = 59/194 (30%), Positives = 96/194 (49%), Gaps = 6/194 (3%)

Query: 85  LAEELQRESMPRHVAVIMDGNRRWAHLRGLP-VGSGYEAGVKSLKTLVELCCKWGIRVLT 143
           L  EL    +P HV +I+DGNRRWA   G   V  G+ AG   +   +  C +  + V+T
Sbjct: 17  LLGELDGAQVPGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVT 76

Query: 144 VFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVIN 203
           ++  S+DN  RP  E+  L+ ++E  V++        R R+  +G    LP      +  
Sbjct: 77  LYLLSTDNLGRPSEELNPLLDIIEDVVRQLAPD---GRWRVRHVGSLDLLPAPSANRLKE 133

Query: 204 VVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETN-- 261
             E T  N   ++ VAV Y G+ ++V A + +  + KD     ++++ES+    + T+  
Sbjct: 134 AEEATVGNDGIKVNVAVGYGGRQEIVDAVRSLLTEHKDKGTSIDELAESVTVDAISTHLY 193

Query: 262 CTEFPYPDLLIRTS 275
               P PDL+IRTS
Sbjct: 194 TGGQPDPDLVIRTS 207

Length = 256

>gnl|CDD|173303 PRK14842, PRK14842, undecaprenyl pyrophosphate synthase; Provisional

 Score = 97.8 bits (243), Expect = 2e-24
 Identities = 54/189 (28%), Positives = 97/189 (51%), Gaps = 5/189 (2%)

Query: 89  LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFS 148
           L   ++P H+AVIMDGN RWA  +G     G+  G  ++  L++   ++G++ ++++AFS
Sbjct: 3   LFESTIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFS 62

Query: 149 SDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETT 208
           ++NW RP  E+  +  LL   ++   ++     IRI   G   KL + + + +   +  T
Sbjct: 63  TENWKRPITEIRSIFGLLVEFIETRLDTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKT 122

Query: 209 KNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYP 268
           K N    +   ++Y    +L++A Q + +  K    +   + + L E+E E      P P
Sbjct: 123 KKNKNLTVNFCLNYGSHDELLRAAQEVFLARKA---KKVTLEKPLKEKEFEKFLYTSPLP 179

Query: 269 --DLLIRTS 275
             DLLIRT+
Sbjct: 180 PVDLLIRTA 188

Length = 241

>gnl|CDD|185571 PTZ00349, PTZ00349, dehydrodolichyl diphosphate synthetase; Provisional

 Score = 82.0 bits (202), Expect = 5e-18
 Identities = 44/136 (32%), Positives = 83/136 (61%), Gaps = 3/136 (2%)

Query: 96  RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRP 155
           +H+++IMDGNRR+A  +GL    G+  G K+L  ++E+C K  I++L+VF+FS  N+ R 
Sbjct: 21  KHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRS 80

Query: 156 EVEVEFL--MSLLESGVKEEKESFIRE-RIRISVIGDTSKLPKCLEELVINVVETTKNNT 212
             E+ FL  ++LL    ++    FI++ +I+I +IG+ S +     +++ ++ E T+N  
Sbjct: 81  PEEIHFLFYLNLLILINEDFFFKFIKDNKIKIKIIGNLSYINDAYRKIIHDIEEKTENFD 140

Query: 213 RFQLIVAVSYSGQYDL 228
              L +  SY+ + ++
Sbjct: 141 NILLNIFFSYTSRNEM 156

Length = 322

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
PRK14832	253	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14837	230	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14840	250	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14842	241	undecaprenyl pyrophosphate synthase; Provisional	100.0
TIGR00055	226	uppS undecaprenyl diphosphate synthase. Alternate	100.0
PRK14831	249	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14829	243	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14834	249	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14838	242	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14827	296	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14836	253	undecaprenyl pyrophosphate synthase; Provisional	100.0
cd00475	221	CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (	100.0
PRK14830	251	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14841	233	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14833	233	undecaprenyl pyrophosphate synthase; Provisional	100.0
PTZ00349	322	dehydrodolichyl diphosphate synthetase; Provisiona	100.0
PRK14835	275	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14828	256	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14839	239	undecaprenyl pyrophosphate synthase; Provisional	100.0
KOG1602	271	consensus Cis-prenyltransferase [Lipid transport a	100.0
COG0020	245	UppS Undecaprenyl pyrophosphate synthase [Lipid me	100.0
PRK10240	229	undecaprenyl pyrophosphate synthase; Provisional	100.0
PF01255	223	Prenyltransf: Putative undecaprenyl diphosphate sy	100.0
KOG2818	263	consensus Predicted undecaprenyl diphosphate synth	98.99
PF01261	213	AP_endonuc_2: Xylose isomerase-like TIM barrel; In	87.95
PRK09856	275	fructoselysine 3-epimerase; Provisional	84.87
PRK13210	284	putative L-xylulose 5-phosphate 3-epimerase; Revie	84.65

>PRK14832 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=1.2e-65  Score=468.40  Aligned_cols=188  Identities=44%  Similarity=0.759  Sum_probs=182.6

Q ss_pred             HHhccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHH
Q 044091           86 AEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSL  165 (275)
Q Consensus        86 ~~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l  165 (275)
                      ...+..+++|+||||||||||||||++|+++.+||++|++++.++++||.++||++|||||||+|||+||++||+.||+|
T Consensus        10 ~~~~~~~~iP~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm~L   89 (253)
T PRK14832         10 PPDLDPQKIPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLMLL   89 (253)
T ss_pred             cccCCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHH
Confidence            34467789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCC
Q 044091          166 LESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIE  245 (275)
Q Consensus       166 ~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~  245 (275)
                      +.+++.+..+.+.++||||+++||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++++|.++
T Consensus        90 ~~~~l~~~~~~~~~~~irv~~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~~~~~v~~g~~~  169 (253)
T PRK14832         90 FERLLRRELAQMHREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVAELVQQGKLS  169 (253)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCchhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHhCCCC
Confidence            99999988888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          246 PNDVSESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       246 ~edI~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      +++||++.|+++|+++  ++||||||||||
T Consensus       170 ~~~i~e~~i~~~L~~~--~~Pd~DLlIRTs  197 (253)
T PRK14832        170 ADAVNEQLVEQHLYTA--DTPPPDLLIRTS  197 (253)
T ss_pred             hhhCCHHHHHHhhCcC--CCCCCCEEEECC
Confidence            9999999999999997  899999999998

>PRK14837 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=2.7e-65  Score=460.30  Aligned_cols=180  Identities=33%  Similarity=0.590  Sum_probs=174.5

Q ss_pred             cCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHh
Q 044091           90 QRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESG  169 (275)
Q Consensus        90 ~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~  169 (275)
                      +.+++|+||||||||||||||++|+++.+||.+|++++.++++||.++||++|||||||+|||+||++||+.||+|+.++
T Consensus         2 ~~~~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~~   81 (230)
T PRK14837          2 NKNSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADY   81 (230)
T ss_pred             CCCCCCCeEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Q 044091          170 VKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDV  249 (275)
Q Consensus       170 l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI  249 (275)
                      |.+..+.+.++||||+++||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++    +.+++++|
T Consensus        82 l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~----~~~~~~~i  157 (230)
T PRK14837         82 LSSEFNFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFTKNFDGLVLNLAINYGGRNEIVRAVKKFLS----SGLDLETL  157 (230)
T ss_pred             HHHHHHHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHh----cCCChhhC
Confidence            99888889999999999999999999999999999999999999999999999999999999999983    57889999


Q ss_pred             CHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          250 SESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       250 ~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      ||+.|+++||+.  ++||||||||||
T Consensus       158 ~e~~~~~~L~~~--~~p~~DLlIRTs  181 (230)
T PRK14837        158 NENVFSKFLDNP--ELPDLDLLIRTG  181 (230)
T ss_pred             CHHHHHHhhccC--CCCCCCEEEECC
Confidence            999999999998  999999999998

>PRK14840 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=4.2e-65  Score=464.20  Aligned_cols=191  Identities=39%  Similarity=0.595  Sum_probs=184.0

Q ss_pred             hHHHHhccCCCCCCEEEEEecCCchHHHHcC----CCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHH
Q 044091           83 PALAEELQRESMPRHVAVIMDGNRRWAHLRG----LPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVE  158 (275)
Q Consensus        83 ~~l~~~l~~~~iPrHIAiImDGNRRwAk~~g----l~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~E  158 (275)
                      +.-..-|+.+++|+||||||||||||||++|    ++..+||++|++++.++++||.++||++|||||||+|||+||++|
T Consensus         7 ~~~~~~~~~~~~P~HVaiImDGNrRwAk~~~~~~gl~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~E   86 (250)
T PRK14840          7 QAQENFPSLQSLPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEE   86 (250)
T ss_pred             hhhhhhcccCCCCCeEEEEcCCChHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHH
Confidence            3444557899999999999999999999975    799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHH
Q 044091          159 VEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMK  238 (275)
Q Consensus       159 V~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~  238 (275)
                      |+.||+|+.++|.+..+.+.++||+|+|+||+++||++++++++++|+.|++|++++||||++||||+||++|+++++++
T Consensus        87 V~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~  166 (250)
T PRK14840         87 VAELFSLFNSQLDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQASSATAHYSRMELVLAINYGGKDELVRAFKKLHQD  166 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCcHHHHHHHHHHHHHH
Confidence            99999999999999888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          239 VKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       239 v~~g~l~~edI~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      +.+|.++++||++++|+++|++.  ++||||||||||
T Consensus       167 v~~~~~~~~~i~~~~i~~~L~~~--~~pdpDLlIRTs  201 (250)
T PRK14840        167 LANKKISSDDISEELISSYLDTS--GLPDPDLLIRTG  201 (250)
T ss_pred             HHhCCCChhhCCHHHHHHHhccC--CCCCCCEEEeCC
Confidence            99999999999999999999987  899999999998

>PRK14842 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=5.1e-65  Score=461.69  Aligned_cols=185  Identities=29%  Similarity=0.503  Sum_probs=180.0

Q ss_pred             ccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHH
Q 044091           89 LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLES  168 (275)
Q Consensus        89 l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~  168 (275)
                      |..+++|+||||||||||||||++|++..+||++|++++.++++||.++||++|||||||+|||+||++||+.||+|+.+
T Consensus         3 ~~~~~~P~HVaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~~   82 (241)
T PRK14842          3 LFESTIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVE   82 (241)
T ss_pred             CCCCCCCCeEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCC-
Q 044091          169 GVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPN-  247 (275)
Q Consensus       169 ~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~e-  247 (275)
                      ++.+..+.+.++||||+++||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++.+|.++++ 
T Consensus        83 ~l~~~~~~~~~~~irv~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~~~~~~~~~~  162 (241)
T PRK14842         83 FIETRLDTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKTKKNKNLTVNFCLNYGSHDELLRAAQEVFLARKAKKVTLEK  162 (241)
T ss_pred             HHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCCccc
Confidence            9998888899999999999999999999999999999999999999999999999999999999999999999999876 


Q ss_pred             CCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          248 DVSESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       248 dI~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      +||++.|+++||++  ++||||||||||
T Consensus       163 ~i~e~~~~~~L~t~--~~p~pDLlIRTs  188 (241)
T PRK14842        163 PLKEKEFEKFLYTS--PLPPVDLLIRTA  188 (241)
T ss_pred             cCCHHHHHHHhCcC--CCCCCCEEEECC
Confidence            89999999999997  899999999998

>TIGR00055 uppS undecaprenyl diphosphate synthase

Probab=100.00  E-value=3.5e-65  Score=458.96  Aligned_cols=178  Identities=46%  Similarity=0.767  Sum_probs=175.5

Q ss_pred             CEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHH
Q 044091           96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKE  175 (275)
Q Consensus        96 rHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~  175 (275)
                      +||||||||||||||++|+++.+||.+|++++.++++||.++||++|||||||+|||+||++||+.||+|+.++|.+..+
T Consensus         1 ~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~~~~~   80 (226)
T TIGR00055         1 RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVK   80 (226)
T ss_pred             CcEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHH
Q 044091          176 SFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIE  255 (275)
Q Consensus       176 ~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e~~i~  255 (275)
                      .+.++||||+++||++.||+++++.++++|+.|++|++++||||++||||+||++|++++++++++|.+++++||++.|+
T Consensus        81 ~~~~~~irvr~iGd~~~Lp~~~~~~i~~~e~~T~~n~~~~lnia~~Yggr~EI~~A~~~~~~~~~~g~~~~~~i~e~~~~  160 (226)
T TIGR00055        81 ELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKVKSGKLLPEDIDEETLN  160 (226)
T ss_pred             HHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHhCCCChhhCCHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCCCCCcEEEecC
Q 044091          256 QELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       256 ~~L~t~~~~~PdPDLLIRTs  275 (275)
                      ++||++  ++||||||||||
T Consensus       161 ~~L~t~--~~pdpDLlIRTs  178 (226)
T TIGR00055       161 KHLYTA--NLPPVDLLIRTS  178 (226)
T ss_pred             HhhccC--CCCCCCEEEeCC
Confidence            999998  899999999998

Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.

>PRK14831 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=4.5e-65  Score=464.40  Aligned_cols=192  Identities=45%  Similarity=0.769  Sum_probs=185.2

Q ss_pred             hhHHHHhccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHH
Q 044091           82 APALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEF  161 (275)
Q Consensus        82 ~~~l~~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~  161 (275)
                      ...+...++.+++|+||||||||||||||++|++..+||++|++++.++++||.++||++|||||||+|||+||++||+.
T Consensus         8 ~~~~~~~~~~~~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~   87 (249)
T PRK14831          8 LQDLPADLDPQRLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNF   87 (249)
T ss_pred             chhhhhhcccCCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHH
Confidence            34455567778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhc
Q 044091          162 LMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKD  241 (275)
Q Consensus       162 Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~  241 (275)
                      ||+|+.++|.+..+.+.++||||+++||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++++
T Consensus        88 Lm~L~~~~l~~~~~~~~~~~iri~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EIv~A~~~l~~~v~~  167 (249)
T PRK14831         88 LMTLFERVLRRELEELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAIAQQVQQ  167 (249)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHHc
Confidence            99999999998888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          242 GLIEPNDVSESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       242 g~l~~edI~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      |.+++++||++.|+++||+.  ++||||||||||
T Consensus       168 g~l~~~~i~e~~~~~~L~t~--~~pdpDLlIRTs  199 (249)
T PRK14831        168 GELDPSEIDENLFESELYTA--GIKDPDLLIRTS  199 (249)
T ss_pred             CCCChHhCCHHHHHHhhccC--CCCCCCEEEeCC
Confidence            99999999999999999987  899999999998

>PRK14829 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=4.2e-65  Score=463.22  Aligned_cols=187  Identities=34%  Similarity=0.568  Sum_probs=182.2

Q ss_pred             HhccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHH
Q 044091           87 EELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLL  166 (275)
Q Consensus        87 ~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~  166 (275)
                      ..++.+++|+||||||||||||||++|++..+||++|++++.++++||.++||++|||||||+|||+||++||+.||+|+
T Consensus         7 ~~~~~~~~P~HvaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~   86 (243)
T PRK14829          7 PDIPKNKLPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFS   86 (243)
T ss_pred             cccccCCCCCeEEEecCCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHH
Confidence            34577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCC
Q 044091          167 ESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEP  246 (275)
Q Consensus       167 ~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~  246 (275)
                      ++++....+.+.++||||+++||++.||+++++.++++|+.|++|++++||||++||||+||++|++++++++++|.+++
T Consensus        87 ~~~l~~~~~~~~~~~iri~~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~~~g~~~~  166 (243)
T PRK14829         87 RDVIHRRREQMDEWGVRVRWSGRRPRLWKSVIDELEAAEELTKNNTTMDLVFCVNYGGRAEIADAAAAIAREVRDGKISG  166 (243)
T ss_pred             HHHHHHHHHHHHHcCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCCh
Confidence            99999888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          247 NDVSESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       247 edI~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      ++||++.|+++|++.  ++||||||||||
T Consensus       167 ~~i~e~~i~~~L~~~--~~pdpDLlIRTs  193 (243)
T PRK14829        167 DRVTEKMISDHLYNP--DMPDVDLFLRTS  193 (243)
T ss_pred             HhCCHHHHHHHhccC--CCCCCCEEEEcC
Confidence            999999999999997  899999999998

>PRK14834 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=2.2e-64  Score=459.64  Aligned_cols=186  Identities=40%  Similarity=0.689  Sum_probs=182.1

Q ss_pred             hccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHH
Q 044091           88 ELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLE  167 (275)
Q Consensus        88 ~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~  167 (275)
                      +++++++|+||||||||||||||++|++..+||.+|++++.++++||.++||++||||+||+|||+||++||+.||+|+.
T Consensus         8 ~~~~~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm~L~~   87 (249)
T PRK14834          8 ESDAMSVPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLLR   87 (249)
T ss_pred             CCCCCCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCC
Q 044091          168 SGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPN  247 (275)
Q Consensus       168 ~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~e  247 (275)
                      .++.+..+.+.++||+|+|+||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++.+|.++++
T Consensus        88 ~~l~~~~~~~~~~~iri~viGd~~~Lp~~l~~~i~~~e~~T~~~~~~~lnla~~Yggr~EI~~A~k~~~~~~~~g~~~~~  167 (249)
T PRK14834         88 LFIRRDLAELHRNGVRVRVIGERAGLEADICALLNEAEELTRNNTGLNLVIAFNYGSRDEIARAVRRLAREVAEGRLDPA  167 (249)
T ss_pred             HHHHHHHHHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHhhccCCceEEEEEeccCCHHHHHHHHHHHHHHHHcCCCChh
Confidence            99998888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          248 DVSESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       248 dI~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      |||++.|+++|++.  ++||||||||||
T Consensus       168 dI~e~~i~~~L~~~--~~pdpDLLIRTs  193 (249)
T PRK14834        168 SIDAETISANLDTA--DIPDPDLIIRTS  193 (249)
T ss_pred             hCCHHHHHHHhccC--CCCCCCEEEEcC
Confidence            99999999999987  899999999997

>PRK14838 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=1.7e-64  Score=458.59  Aligned_cols=183  Identities=40%  Similarity=0.725  Sum_probs=177.5

Q ss_pred             ccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHH
Q 044091           89 LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLES  168 (275)
Q Consensus        89 l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~  168 (275)
                      +..+++|+||||||||||||||++|++..+||.+|++++.++++||.++||++|||||||+|||+||++||+.||+++.+
T Consensus         5 ~~~~~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm~l~~~   84 (242)
T PRK14838          5 IDMNRIPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSLLLD   84 (242)
T ss_pred             ccCCCCCCEEEEeccCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 044091          169 GVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPND  248 (275)
Q Consensus       169 ~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~ed  248 (275)
                      +|.+.  .+.++||+|+++||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++++|.+++++
T Consensus        85 ~l~~~--~~~~~~irir~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~lnia~~Yggr~EI~~A~~~~~~~~~~g~~~~~~  162 (242)
T PRK14838         85 SIEEE--TFMKNNIRFRIIGDIAKLPEEVQERLNECEEHTAKNTGMCLVLALSYSSRWEITEATRQIATLVQNGELNPEE  162 (242)
T ss_pred             HHHHH--HHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEeecCCCHHHHHHHHHHHHHHHHhCCCChhh
Confidence            99764  4788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          249 VSESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       249 I~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      ||++.|+++|++.  ++||||||||||
T Consensus       163 i~e~~~~~~L~~~--~~pd~DLlIRTs  187 (242)
T PRK14838        163 ITEESISEHLTTN--FMPDPDLLIRTG  187 (242)
T ss_pred             CCHHHHHHHhccC--CCCCCCEEEeCC
Confidence            9999999999997  899999999998

>PRK14827 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=1.6e-64  Score=469.48  Aligned_cols=193  Identities=31%  Similarity=0.534  Sum_probs=187.2

Q ss_pred             chhHHHHhccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHH
Q 044091           81 DAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVE  160 (275)
Q Consensus        81 ~~~~l~~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~  160 (275)
                      ....+...|+.+++|+||||||||||||||++|+++.+||++|++++.++++||.++||++|||||||+||||||++||+
T Consensus        54 ~~~~~~~~l~~~~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~  133 (296)
T PRK14827         54 TSKAAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVR  133 (296)
T ss_pred             cccccccccCCCCCCCeEEEeccCchHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHH
Confidence            45566777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHh
Q 044091          161 FLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVK  240 (275)
Q Consensus       161 ~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~  240 (275)
                      .||+|++++|.+..+.+.++||||+|+||+++||+++++.++++|+.|++|++++||||++||||+||++|+++++++|+
T Consensus       134 ~Lm~L~~~~l~~~~~~~~~~~irir~iG~~~~Lp~~v~~~i~~~e~~T~~n~~~~Lnia~~YgGR~EI~~A~~~i~~~v~  213 (296)
T PRK14827        134 FLMGFNRDVVRRRRDNLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTKSNDVITINYCVNYGGRTEITEATREIAREAA  213 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence            99999999999888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          241 DGLIEPNDVSESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       241 ~g~l~~edI~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      +|.+++++||++.|+++|++.  ++||||||||||
T Consensus       214 ~g~l~~~~I~e~~i~~~L~t~--~~PdpDLlIRTs  246 (296)
T PRK14827        214 AGRLNPERITESTIARHLQRP--DIPDVDLFLRTS  246 (296)
T ss_pred             cCCCChhhccHHHHHHHhccC--CCCCCCEEEecC
Confidence            999999999999999999997  999999999998

>PRK14836 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=1.5e-64  Score=461.81  Aligned_cols=188  Identities=43%  Similarity=0.725  Sum_probs=183.4

Q ss_pred             HHhccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHH
Q 044091           86 AEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSL  165 (275)
Q Consensus        86 ~~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l  165 (275)
                      ...|+.+++|+|||||||||||||+++|++..+||.+|++++.++++||.++||++|||||||+|||+||++||+.||++
T Consensus         6 ~~~~~~~~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l   85 (253)
T PRK14836          6 QMIPANENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMEL   85 (253)
T ss_pred             ccccccCCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCC
Q 044091          166 LESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIE  245 (275)
Q Consensus       166 ~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~  245 (275)
                      +.++|.+..+.+.++||+|+++||++.||+++++.++++|+.|++|++++||||++||||+||++|++++++++++|.++
T Consensus        86 ~~~~l~~~~~~~~~~~irv~viG~~~~Lp~~~~~~i~~~e~~T~~n~~~~Lnla~~YggR~EI~~A~k~l~~~~~~g~l~  165 (253)
T PRK14836         86 FLKALDREVDKLHRNGIRVRFIGDRSRLSPKLQERMEYAERLTASNTRLILSLAVSYGGRWDIVTAARALAREVAAGKLA  165 (253)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHHhCCCC
Confidence            99999988889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          246 PNDVSESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       246 ~edI~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      +++||++.|+++|++.  ++||||||||||
T Consensus       166 ~~~i~e~~i~~~L~~~--~~pdpDLlIRTs  193 (253)
T PRK14836        166 PDEIDEALLAQHLALA--DLPEPDLFIRTS  193 (253)
T ss_pred             hHhCCHHHHHHHhccC--CCCCCCEEEEcC
Confidence            9999999999999997  899999999998

>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates

Probab=100.00  E-value=2.1e-64  Score=452.97  Aligned_cols=179  Identities=44%  Similarity=0.759  Sum_probs=176.5

Q ss_pred             CCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHH
Q 044091           95 PRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEK  174 (275)
Q Consensus        95 PrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~  174 (275)
                      |+||||||||||||||++|++..+||++|++++.++++||.++||++|||||||+|||+||++||+.||+++++++.+..
T Consensus         1 P~HvaiImDGNrRwA~~~gl~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~   80 (221)
T cd00475           1 PKHVAFIMDGNRRWAKQRGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLMELFRDVLRRIL   80 (221)
T ss_pred             CCeEEEecCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHH
Q 044091          175 ESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLI  254 (275)
Q Consensus       175 ~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e~~i  254 (275)
                      +.+.++||+||++||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++++|.++++|||++.|
T Consensus        81 ~~~~~~~i~vr~iGd~~~Lp~~~~~~~~~~e~~T~~~~~~~lni~~~Y~gr~eI~~a~~~~~~~~~~~~~~~~~i~~~~~  160 (221)
T cd00475          81 KELEKLGVRIRIIGDLSLLPESLQKEIKKAEEATKNNTGFTLNVAFNYGGRQEIIHAVREIAEKVKAGKLTPEDIDESTL  160 (221)
T ss_pred             HHHHHCCcEEEEEeChhhCCHHHHHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChHhCCHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhcCCCCCCCCcEEEecC
Q 044091          255 EQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       255 ~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      +++|++.  ++||||||||||
T Consensus       161 ~~~L~~~--~~p~pDLlIRTs  179 (221)
T cd00475         161 NKHLYTH--DSPDPDLLIRTS  179 (221)
T ss_pred             HHhhCcC--CCCCCCEEEecC
Confidence            9999987  899999999998

A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.

>PRK14830 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=6.2e-64  Score=457.36  Aligned_cols=187  Identities=42%  Similarity=0.718  Sum_probs=182.1

Q ss_pred             HhccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHH
Q 044091           87 EELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLL  166 (275)
Q Consensus        87 ~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~  166 (275)
                      ..++.+++|+||||||||||||||++|++..+||++|++++.++++||.++||++|||||||+|||+||++||+.||+|+
T Consensus        15 ~~~~~~~~P~HVAiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm~l~   94 (251)
T PRK14830         15 EELDKGNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLP   94 (251)
T ss_pred             cccCCCCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHH
Confidence            34577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCC
Q 044091          167 ESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEP  246 (275)
Q Consensus       167 ~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~  246 (275)
                      .++|.+..+.+.+++|+|+|+||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++++|.+++
T Consensus        95 ~~~l~~~~~~~~~~~iri~viG~~~~Lp~~~~~~~~~~e~~T~~~~~~~Lnia~~YggR~EI~~A~~~~~~~v~~g~l~~  174 (251)
T PRK14830         95 VEFLDKFVPELIENNVKVNVIGDTDRLPEHTLRALEKAIEKTKNNTGLILNFALNYGGRAEIVSAVKEIAKDVLDGKLNP  174 (251)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEcChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCCh
Confidence            99999888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          247 NDVSESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       247 edI~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      +||+++.|+++|++.  ++||||||||||
T Consensus       175 ~~I~e~~i~~~L~~~--~~pdpDLlIRTs  201 (251)
T PRK14830        175 EDITEELISNYLMTK--GLPDPDLLIRTS  201 (251)
T ss_pred             HhCCHHHHHHHhCcC--CCCCCCEEEeCC
Confidence            999999999999997  899999999997

>PRK14841 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=1.5e-63  Score=450.48  Aligned_cols=179  Identities=40%  Similarity=0.662  Sum_probs=174.2

Q ss_pred             CCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHH
Q 044091           93 SMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKE  172 (275)
Q Consensus        93 ~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~  172 (275)
                      ++|+||||||||||||||++|++..+||.+|++++.++++||.++||++|||||||+|||+||++||+.||+|++++|.+
T Consensus         2 ~~P~HVaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~   81 (233)
T PRK14841          2 RIPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDR   81 (233)
T ss_pred             CCCCEEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHH
Q 044091          173 EKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSES  252 (275)
Q Consensus       173 ~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e~  252 (275)
                      ..+.+.++||+||++||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++.+|..  ++|+++
T Consensus        82 ~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~~~~~~--~~i~~~  159 (233)
T PRK14841         82 EMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDRMTLVIAFNYGGRREILDAVESILKDVSQGKK--IELTEE  159 (233)
T ss_pred             HHHHHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHHHHHcCCc--CCCCHH
Confidence            888899999999999999999999999999999999999999999999999999999999999999988864  689999


Q ss_pred             HHHhhhhcCCCCCCCCcEEEecC
Q 044091          253 LIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       253 ~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      .|+++|++.  ++||||||||||
T Consensus       160 ~~~~~L~~~--~~pdpDLlIRTs  180 (233)
T PRK14841        160 TFRQYLYLP--DVPDPDLIIRTS  180 (233)
T ss_pred             HHHHHhccC--CCCCCCEEEeCC
Confidence            999999997  899999999998

>PRK14833 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=4e-63  Score=447.63  Aligned_cols=181  Identities=34%  Similarity=0.633  Sum_probs=172.0

Q ss_pred             CCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHH
Q 044091           92 ESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVK  171 (275)
Q Consensus        92 ~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~  171 (275)
                      +++|+||||||||||||||++|++..+||++|++++.++++||.++||++|||||||+|||+||++||+.||+|+.++|.
T Consensus         2 ~~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm~L~~~~l~   81 (233)
T PRK14833          2 DNTLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKKYLK   81 (233)
T ss_pred             CCCCCeEEEEccCCHHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCH
Q 044091          172 EEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSE  251 (275)
Q Consensus       172 ~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e  251 (275)
                      +..+.+.++||+||++||+++||++++++++++|+.|++|++++||||++||||+||++|++++++++.. .....+|++
T Consensus        82 ~~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~~~-~~~~~~i~e  160 (233)
T PRK14833         82 DERSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSFKGFTQVLALNYGSKDEISRAFKKLLESPPS-HIGELESLE  160 (233)
T ss_pred             HHHHHHHhCCcEEEEEeChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHhhc-ccCcccCCH
Confidence            8888899999999999999999999999999999999999999999999999999999999999988631 122348999


Q ss_pred             HHHHhhhhcCCCCCCCCcEEEecC
Q 044091          252 SLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       252 ~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      +.|+++|+++  ++||||||||||
T Consensus       161 ~~l~~~L~~~--~~p~pDLlIRTs  182 (233)
T PRK14833        161 EEISNCLDTA--DLPEVDLLIRTG  182 (233)
T ss_pred             HHHHHHhccC--CCCCCCEEEECC
Confidence            9999999997  899999999998

>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional

Probab=100.00  E-value=3.9e-63  Score=462.75  Aligned_cols=192  Identities=28%  Similarity=0.463  Sum_probs=178.0

Q ss_pred             hhHHHHhccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHH
Q 044091           82 APALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEF  161 (275)
Q Consensus        82 ~~~l~~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~  161 (275)
                      ++.+...|+.+++|+||||||||||||||++|+++.+||++|++++.++++||.++||++|||||||+|||+||++||++
T Consensus         7 ~~~~~~~l~~g~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~EV~~   86 (322)
T PTZ00349          7 ERFITSLLRDFINIKHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHF   86 (322)
T ss_pred             HHHHHHHhhcCCCCCcEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHHHHH
Confidence            35666779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHH---HHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHH---------
Q 044091          162 LMSLLESGVKEE---KESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLV---------  229 (275)
Q Consensus       162 Lm~l~~~~l~~~---~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv---------  229 (275)
                      ||+|+..++.+.   .+.+.++||||||+||++.||+++++.++++|+.|++|++++||||++||||+||+         
T Consensus        87 Lm~L~~~~l~~~~~~~~~l~~~~irirviGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~YggR~EI~~~v~~~~~~  166 (322)
T PTZ00349         87 LFYLNLLILINEDFFFKFIKDNKIKIKIIGNLSYINDAYRKIIHDIEEKTENFDNILLNIFFSYTSRNEMSLCKFNPNLY  166 (322)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhCCCCCcEEEEEecCCCHHHHHHhhcccchH
Confidence            999999999876   57788999999999999999999999999999999999999999999999999999         


Q ss_pred             -HHHHHHHHH-------------HhcCCC---------------------------------------CCCCCCHHHHHh
Q 044091          230 -QACQRIAMK-------------VKDGLI---------------------------------------EPNDVSESLIEQ  256 (275)
Q Consensus       230 -~A~r~l~~~-------------v~~g~l---------------------------------------~~edI~e~~i~~  256 (275)
                       +|+++++++             +.+|.+                                       ++++|+++.|.+
T Consensus       167 ~~A~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~e~~i~~~~~~~  246 (322)
T PTZ00349        167 FDTYKNLLEEKKILCGSNILTDPIKEGTFAIPDDEDECDYLDHELENERIDLDLKFDGDCICGEKSFLNEEQIEIVNYHK  246 (322)
T ss_pred             HHHHHHHHHHhccccccccccccccccccccchhcccccccccccccccccccccccccccccccccCChhhccHHHHHH
Confidence             799999887             455654                                       334566667999


Q ss_pred             hhhcCCCCCCCCcEEEecC
Q 044091          257 ELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       257 ~L~t~~~~~PdPDLLIRTs  275 (275)
                      +||++  ++||||||||||
T Consensus       247 ~Lyt~--~~PdpDLlIRTS  263 (322)
T PTZ00349        247 KLLTS--DLPPPNILIRTS  263 (322)
T ss_pred             hccCC--CCCCCCEEEECC
Confidence            99998  999999999998

>PRK14835 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=6e-63  Score=455.59  Aligned_cols=193  Identities=32%  Similarity=0.528  Sum_probs=183.7

Q ss_pred             chhHHHHhccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHH
Q 044091           81 DAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVE  160 (275)
Q Consensus        81 ~~~~l~~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~  160 (275)
                      |.+.+...+..+++|+||||||||||||||++|++..+||.+|++++.++++||.++||++||||+||+|||+||++||+
T Consensus        28 ~~~~l~~~~~~~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R~~~EV~  107 (275)
T PRK14835         28 YEQRLEREVKHGKLPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVE  107 (275)
T ss_pred             HHHHHHhhcccCCCCCEEEEEecCchHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEccccCCCHHHHH
Confidence            34566677778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHH--HhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHH
Q 044091          161 FLMSLLESGVKEEKE--SFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMK  238 (275)
Q Consensus       161 ~Lm~l~~~~l~~~~~--~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~  238 (275)
                      .||+++.+++.+..+  .+.++||+|+++||++.||+++++.++++|+.|++|++++||||++||||+||++|+++++++
T Consensus       108 ~Lm~L~~~~l~~~~~~~~~~~~~irir~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~i~~~  187 (275)
T PRK14835        108 TLMNLFEREARRMAVDPRIHANRVRVRAIGRHDGFPPKVLEALEELEERTEGHEGMLLNIAVGYGGREEIVDAVKSLLLE  187 (275)
T ss_pred             HHHHHHHHHHHHHhchhhhhhCCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHH
Confidence            999999999987653  688999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCCC----CHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          239 VKDGLIEPNDV----SESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       239 v~~g~l~~edI----~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      +++|.++++||    ||+.|+++|++.  ++||||||||||
T Consensus       188 ~~~g~~~~~~i~~~~~e~~i~~~L~~~--~~p~pDLLIRTs  226 (275)
T PRK14835        188 AAATGKSPEEVAAELTPEHISAHLYTA--GVPDPDFIIRTS  226 (275)
T ss_pred             HHcCCCChHHhcccCCHHHHHHHhccC--CCCCCCEEEecC
Confidence            99999999877    789999999997  899999999998

>PRK14828 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=4.6e-62  Score=446.19  Aligned_cols=189  Identities=32%  Similarity=0.475  Sum_probs=178.9

Q ss_pred             hhHHHHhccCCCCCCEEEEEecCCchHHHHcCCCCC-cchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHH
Q 044091           82 APALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVG-SGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVE  160 (275)
Q Consensus        82 ~~~l~~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~-~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~  160 (275)
                      .+.+...++.+++|+||||||||||||||++|++.. +||++|++++.++++||.++||++|||||||+|||+||++||+
T Consensus        14 ~~~~~~~~~~~~~P~HvAiImDGNrRwA~~~gl~~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~   93 (256)
T PRK14828         14 ARRLLGELDGAQVPGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELN   93 (256)
T ss_pred             HHHHHhhcccCCCCCEEEEEecCChHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHH
Confidence            345666778889999999999999999999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHh
Q 044091          161 FLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVK  240 (275)
Q Consensus       161 ~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~  240 (275)
                      .||+|+.+++.+..   .+++|+|+++||++.||++++++++++|+.|++|++++||||++||||+||++|++++++++.
T Consensus        94 ~Lm~L~~~~l~~~~---~~~~irv~~iG~~~~lp~~~~~~~~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~~  170 (256)
T PRK14828         94 PLLDIIEDVVRQLA---PDGRWRVRHVGSLDLLPAPSANRLKEAEEATVGNDGIKVNVAVGYGGRQEIVDAVRSLLTEHK  170 (256)
T ss_pred             HHHHHHHHHHHHHH---HhCCeEEEEECChhhCCHHHHHHHHHHHHhhcCCCCcEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence            99999999997643   578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCC----CCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          241 DGLIEPN----DVSESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       241 ~g~l~~e----dI~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      +|.++++    +||++.|+++|++.  ++||||||||||
T Consensus       171 ~~~~~~~~~~~~i~e~~i~~~L~~~--~~P~pDLlIRTs  207 (256)
T PRK14828        171 DKGTSIDELAESVTVDAISTHLYTG--GQPDPDLVIRTS  207 (256)
T ss_pred             hCCCChhhccccCCHHHHHHHhccC--CCCCCCEEEeCC
Confidence            9999876    67889999999997  899999999997

>PRK14839 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=1.2e-61  Score=438.34  Aligned_cols=172  Identities=39%  Similarity=0.610  Sum_probs=166.3

Q ss_pred             CCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHH
Q 044091           93 SMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKE  172 (275)
Q Consensus        93 ~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~  172 (275)
                      .-|+|||||||||||||+++|++..+||.+|++++.++++||.++||++|||||||+|||+||++||+.||+|++++|.+
T Consensus         8 ~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~   87 (239)
T PRK14839          8 RSGLHVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRAYLRN   87 (239)
T ss_pred             CCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHHHHHHH
Confidence            45999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHH
Q 044091          173 EKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSES  252 (275)
Q Consensus       173 ~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e~  252 (275)
                      ..+.+.++||||+++||+++||+++++.++++|+.|++|++++||||++||||+||++|+++++        .+++||++
T Consensus        88 ~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~~~--------~~~~i~e~  159 (239)
T PRK14839         88 ETERLARNGVRLTVIGRRDRLPDGIPEAIARAEAATAGGDRLHLRIAVDYSARDAILAAAAKAL--------GPEGLSRE  159 (239)
T ss_pred             HHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHhc--------CcccCCHH
Confidence            8888999999999999999999999999999999999999999999999999999999999864        57899999


Q ss_pred             HHHhhhhcCCCCCCCCcEEEecC
Q 044091          253 LIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       253 ~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      .|+++|+ .  ++||||||||||
T Consensus       160 ~~~~~l~-~--~~p~~DLlIRTs  179 (239)
T PRK14839        160 AFSDLLT-G--DGGDVDLLIRTG  179 (239)
T ss_pred             HHHHHhc-c--CCCCCCEEEeCC
Confidence            9999998 5  899999999998

>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]

Probab=100.00  E-value=5.2e-61  Score=433.87  Aligned_cols=185  Identities=46%  Similarity=0.676  Sum_probs=177.9

Q ss_pred             hccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHH
Q 044091           88 ELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLE  167 (275)
Q Consensus        88 ~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~  167 (275)
                      .+..+++|+||||||||||||||++|++..+||++|+.++.++++||.++||++||+||||+||||||++||+.||+|+.
T Consensus        30 ~~~~g~~P~HVaFIMDGNRR~AKk~~L~~~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~L~~  109 (271)
T KOG1602|consen   30 LLARGPMPRHVAFIMDGNRRYAKKRGLETSEGHEAGFEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMDLAL  109 (271)
T ss_pred             HHhcCCCcceeEEEecCchHHHHhcCCCcccchHHHHHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHH---HHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCC
Q 044091          168 SGVKEEK---ESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLI  244 (275)
Q Consensus       168 ~~l~~~~---~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l  244 (275)
                      ++++...   +.++++||||||+||+++||+++++.+.++|+.|++|++++||||++|+||+||++|+|+++..+++|.+
T Consensus       110 ~k~~~~~~~~~~~~~~gvririiGdlslL~~~l~k~i~~ieE~Tknn~~~~L~vcf~Ytsr~EI~~a~r~~~~~~~~g~~  189 (271)
T KOG1602|consen  110 EKIERLLEQGEKLDKYGVRIRVIGDLSLLPESLRKAIKKIEEATKNNTRLILNVCFAYTSRDEILHAVRGIVKRVKDGDI  189 (271)
T ss_pred             HHHHHHHHHhhhhhhcCeEEEEEcchhhCCHHHHHHHHHHHHHhhcCCceEEEEEeccCcHHHHHHHHHHHHHhhhcCCC
Confidence            9998533   4688999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          245 EPNDVSESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       245 ~~edI~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      ++ ||++..|+++||++  +.|.||||||||
T Consensus       190 ~~-~i~~~~~e~~l~~~--~~p~pDLlIRTS  217 (271)
T KOG1602|consen  190 DV-DINLSDIEECLYTS--DVPHPDLLIRTS  217 (271)
T ss_pred             cc-chhhHHHHHhhccC--CCCCCCEEEEcC
Confidence            88 99999999999998  779999999998

>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]

Probab=100.00  E-value=7.6e-60  Score=428.78  Aligned_cols=181  Identities=48%  Similarity=0.828  Sum_probs=178.9

Q ss_pred             CCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHH
Q 044091           93 SMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKE  172 (275)
Q Consensus        93 ~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~  172 (275)
                      .+|+||||||||||||||++|+++..||..|++++.++++||.++||++||+|+||+|||+||++||++||+++..++.+
T Consensus        15 ~~p~HvaiImDGN~RwAk~~~~~r~~Gh~~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~lm~l~~~~l~~   94 (245)
T COG0020          15 RLPRHVAIIMDGNRRWAKKRGLPRIEGHKAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLMELFEKALRE   94 (245)
T ss_pred             ccccceEEEecCChHHHHhCCCChhHHHHHhHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHH
Q 044091          173 EKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSES  252 (275)
Q Consensus       173 ~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e~  252 (275)
                      ..+.+++++|+|+++|+++.||.++++.++.+|+.|++|++++||+|++||||+||++|+|+++++|++|.+++++|||+
T Consensus        95 ~~~~l~~~~v~v~~iG~~~~l~~~~~~~i~~~e~~t~~~~~~~l~~a~nYGGR~eI~~avr~ia~~v~~g~l~~~~I~e~  174 (245)
T COG0020          95 ELKKLHKNGVRIRIIGDLSRLPEEVREAIEKAEEKTKNNTGLTLNIAVNYGGRDEIVDAVRKIAEDVAAGKLSPEDIDEE  174 (245)
T ss_pred             HHHHHhhcCeEEEEEeccccCCHHHHHHHHHHHHhccCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHcCCCChHHcCHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhcCCCCCCCCcEEEecC
Q 044091          253 LIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       253 ~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      +|+++|++.  ++||||||||||
T Consensus       175 ~i~~~L~~~--~~pdpDLlIRTs  195 (245)
T COG0020         175 LISSHLYTS--GLPDPDLLIRTS  195 (245)
T ss_pred             HHHHhhccc--CCCCCCEEEeCC
Confidence            999999997  999999999997

>PRK10240 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=1.1e-58  Score=417.85  Aligned_cols=172  Identities=37%  Similarity=0.627  Sum_probs=169.5

Q ss_pred             ecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCC
Q 044091          102 MDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRER  181 (275)
Q Consensus       102 mDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~  181 (275)
                      |||||||||++|++..+||.+|++++.++++||.++||++|||||||+|||+||++||+.||+|+.++|.+..+.+.++|
T Consensus         1 mDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~   80 (229)
T PRK10240          1 MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHN   80 (229)
T ss_pred             CCCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998888899999


Q ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhcC
Q 044091          182 IRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETN  261 (275)
Q Consensus       182 irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e~~i~~~L~t~  261 (275)
                      |+|+++||+++||+++++.++++|+.|++|++++||||++||||+||++|+++++++|.+|.++++||+++.|+++|++.
T Consensus        81 i~vr~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~v~~g~~~~~~i~e~~i~~~L~t~  160 (229)
T PRK10240         81 VRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEQVQQGNLQPDQIDEEMLNQHICMH  160 (229)
T ss_pred             cEEEEEeChhhCCHHHHHHHHHHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHHHHcCCCChhhCCHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCCCcEEEecC
Q 044091          262 CTEFPYPDLLIRTS  275 (275)
Q Consensus       262 ~~~~PdPDLLIRTs  275 (275)
                        ++||||||||||
T Consensus       161 --~~pdpDLlIRTs  172 (229)
T PRK10240        161 --ELAPVDLVIRTG  172 (229)
T ss_pred             --CCCCCCEEEeCC
Confidence              899999999998

>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2

Probab=100.00  E-value=2.9e-58  Score=413.46  Aligned_cols=172  Identities=47%  Similarity=0.801  Sum_probs=158.3

Q ss_pred             EecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhh--
Q 044091          101 IMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFI--  178 (275)
Q Consensus       101 ImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~--  178 (275)
                      |||||||||+++|++..+||.+|++++.++++||.++||++|||||||+|||+||++||+.||+++..++.+..+...  
T Consensus         1 ImDGNrRwA~~~g~~~~~Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~   80 (223)
T PF01255_consen    1 IMDGNRRWAKKRGLPRSEGHRAGAEKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALMDLFERYLRELIDELNFH   80 (223)
T ss_dssp             EE--HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             CCcCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHHHHHHHHHHHHhhhcchh
Confidence            899999999999999999999999999999999999999999999999999999999999999999999998887666  


Q ss_pred             cCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhh
Q 044091          179 RERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQEL  258 (275)
Q Consensus       179 ~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e~~i~~~L  258 (275)
                      +++|||+++||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++.|++|.++++|||++.|+++|
T Consensus        81 ~~~irvr~iGd~~~Lp~~~~~~i~~~e~~T~~n~~l~Lnia~~Yggr~eI~~a~~~~~~~~~~~~~~~~~i~~~~i~~~L  160 (223)
T PF01255_consen   81 KNGIRVRVIGDLSLLPEELQKAIAEAEEKTKNNTGLTLNIAINYGGRDEIVDAARKLAEEVQSGKLSPEDIDEELISSHL  160 (223)
T ss_dssp             HTTEEEEEES-GGGS-HHHHHHHHHHHHHHTTSSSEEEEEEECE-HHHHHHHHHHHHHHHHHTTSSGGGG-SHHHHHHTS
T ss_pred             hcCeeEEEEeccCcCCHHHHHHHHHHHHhhccCcceeEEEEecCCcHHHHHHHHHHhhhhhccCccccccCCHHHHHhhc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCcEEEecC
Q 044091          259 ETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       259 ~t~~~~~PdPDLLIRTs  275 (275)
                      +++  ++| ||||||||
T Consensus       161 ~~~--~~P-pDLlIRts  174 (223)
T PF01255_consen  161 YTP--DLP-PDLLIRTS  174 (223)
T ss_dssp             TTT--TS---SEEEEET
T ss_pred             ccc--CCC-CCEEEEeC
Confidence            997  777 99999998

5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....

>KOG2818 consensus Predicted undecaprenyl diphosphate synthase [Lipid transport and metabolism]

Probab=98.99  E-value=4.2e-10  Score=103.12  Aligned_cols=154  Identities=17%  Similarity=0.168  Sum_probs=104.2

Q ss_pred             ccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHH-HHHHHH
Q 044091           89 LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEF-LMSLLE  167 (275)
Q Consensus        89 l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~-Lm~l~~  167 (275)
                      .+..+.|+|+|++.--++           +| .-.+..+.+++.||...||+++++|+.-. -.+|...++.. +.....
T Consensus        59 ~~L~k~p~hl~lvI~~v~-----------~~-~~~~~da~~~v~w~v~~gik~~~lyd~~g-~~~r~~~~~~~~I~s~la  125 (263)
T KOG2818|consen   59 SSLKKGPKHLALVIHPVE-----------DG-EGSFSDASSIVFWAVTVGIKYLSLYDRVG-IKKRNMPVVRDEIISHLA  125 (263)
T ss_pred             hhhhhcchhheEEEEecc-----------cC-CceehhhHHHHHHHHHhccceeeHHHHHH-HhccCcHHHHHHHHHhhh
Confidence            445689999997766442           23 12368899999999999999999999764 23566655443 222222


Q ss_pred             HhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcC--CCC
Q 044091          168 SGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDG--LIE  245 (275)
Q Consensus       168 ~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g--~l~  245 (275)
                      +++...     .  ..+-+.-   .+..        .+....++..+.+..-+.-+||.-|++.++.|.+.+...  ..+
T Consensus       126 ~~~g~~-----~--~~~~~~~---~~sn--------D~~nQ~~~~~L~~~~~s~~DGr~~i~Dl~r~i~~~~~~~~~~~~  187 (263)
T KOG2818|consen  126 NYFGLD-----E--PTLAVTI---KLSN--------DEPNQEDKCKLGTHAISLEDGRMIIIDLTRLIQELCYLYELYRS  187 (263)
T ss_pred             hhcCCC-----C--CcccccC---CCCC--------CCcccccccchhheecccccccHHHHHHHHHHHHHHHHHHHhCC
Confidence            222200     0  0110000   0111        122224566788888999999999999999988776654  468


Q ss_pred             CCCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          246 PNDVSESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       246 ~edI~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      ++|||.|++++.|...  +.|||||+|++|
T Consensus       188 ~~~itve~vds~l~e~--~~PePdLll~fg  215 (263)
T KOG2818|consen  188 ETDITVETVDSELKEF--VEPEPDLLLFFG  215 (263)
T ss_pred             CccccHHHHHHHHHhc--CCCCcceeeeec
Confidence            8999999999999875  899999999986

>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3

Probab=87.95  E-value=3.4  Score=34.77  Aligned_cols=117  Identities=17%  Similarity=0.123  Sum_probs=64.8

Q ss_pred             hhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHH--
Q 044091          120 YEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCL--  197 (275)
Q Consensus       120 h~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l--  197 (275)
                      .....+.+.+.++.|..+|++.+++....-.-+....  .+.-++.+.+.|+...+...+.|+++-+-..........  
T Consensus        66 r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~--~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~  143 (213)
T PF01261_consen   66 REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDD--TEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFS  143 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSS--HHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESS
T ss_pred             hHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCC--HHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhh
Confidence            4566899999999999999999999854211111111  223445555666666677778899988865443332111  


Q ss_pred             -HHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHH
Q 044091          198 -EELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMK  238 (275)
Q Consensus       198 -~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~  238 (275)
                       .....-+++.-..+-++.+.++=-+-...+..++++.+...
T Consensus       144 ~~~~~~~l~~~~~~~~~i~~D~~h~~~~~~~~~~~i~~~~~~  185 (213)
T PF01261_consen  144 VEEIYRLLEEVDSPNVGICFDTGHLIMAGEDPDEAIKRLAPR  185 (213)
T ss_dssp             HHHHHHHHHHHTTTTEEEEEEHHHHHHTTHHHHHHHHHHHHG
T ss_pred             HHHHHHHHhhcCCCcceEEEehHHHHHcCCCHHHHHHHhhcc
Confidence             22222233332233233333222233355666676666544

1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....

>PRK09856 fructoselysine 3-epimerase; Provisional

Probab=84.87  E-value=16  Score=32.94  Aligned_cols=114  Identities=6%  Similarity=0.024  Sum_probs=68.7

Q ss_pred             hhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEec--CCC-CCCHH
Q 044091          120 YEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIG--DTS-KLPKC  196 (275)
Q Consensus       120 h~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iG--d~~-~LP~~  196 (275)
                      ..+.++.+.+.+++|..+|++.+.+... ..++..+.++   .++-+.+.++...+...++||++-+--  ..+ .+-..
T Consensus        85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~-~~~~~~~~~~---~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~~~~~~~t  160 (275)
T PRK09856         85 RRESLDMIKLAMDMAKEMNAGYTLISAA-HAGYLTPPNV---IWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCN  160 (275)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEcCC-CCCCCCCHHH---HHHHHHHHHHHHHHHHHHcCCEEEEecCCCCcccccCC
Confidence            4566789999999999999999988664 2344444433   345556677777777888999987642  111 11111


Q ss_pred             HHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHH
Q 044091          197 LEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAM  237 (275)
Q Consensus       197 l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~  237 (275)
                      ....++-+.+....+-++.+.++-.|..-+++...++++..
T Consensus       161 ~~~~~~l~~~~~~~~v~~~~D~~h~~~~~~~~~~~i~~~~~  201 (275)
T PRK09856        161 ANDVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGD  201 (275)
T ss_pred             HHHHHHHHHHcCCCcceeEEeecchhcCCCCHHHHHHHhCC
Confidence            22333333333334556666666544444567777766644

>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=84.65  E-value=11  Score=33.89  Aligned_cols=66  Identities=15%  Similarity=0.215  Sum_probs=45.5

Q ss_pred             chhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEec
Q 044091          119 GYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIG  188 (275)
Q Consensus       119 Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iG  188 (275)
                      -..+..+.+.+++++|..+|++.|.+..+.  .+..+..+  .-++.+.+.|.+..+...++||++-+-.
T Consensus        88 ~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~--~~~~~~~~--~~~~~~~~~l~~l~~~a~~~gv~l~lE~  153 (284)
T PRK13210         88 TRERALEIMKKAIRLAQDLGIRTIQLAGYD--VYYEEKSE--ETRQRFIEGLAWAVEQAAAAQVMLAVEI  153 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEECCcc--cccccccH--HHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence            345678899999999999999999986442  12222221  2345556666666677888899988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	275
4h8e_A	256	Structure Of S. Aureus Undecaprenyl Diphosphate Syn		2e-33
1ueh_A	253	E. Coli Undecaprenyl Pyrophosphate Synthase In Comp		9e-33
1x08_A	253	Crystal Structure Of D26a Mutant Upps In Complex Wi		7e-32
1jp3_A	253	Structure Of E.Coli Undecaprenyl Pyrophosphate Synt		7e-31
1f75_A	249	Crystal Structure Of Undecaprenyl Diphosphate Synth		6e-30
3ugs_B	225	Crystal Structure Of A Probable Undecaprenyl Diphos		2e-26
2d2r_A	245	Crystal Structure Of Helicobacter Pylori Undecapren		4e-26
2vg2_A	284	Rv2361 With Ipp Length = 284		6e-22
2vg1_A	228	Rv1086 E,E-Farnesyl Diphosphate Complex Length = 22		4e-14
2vfw_A	227	Rv1086 Native Length = 227		5e-14

>pdb|4H8E|A Chain A, Structure Of S. Aureus Undecaprenyl Diphosphate Synthase In Complex With Fpp And Sulfate Length = 256

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 114/189 (60%), Gaps = 2/189 (1%)
Query: 87  EELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFA 146
           EEL   ++P H+A+IMDGN RWA  R +P   G+  G++++K +  +    G++ LT++A
Sbjct: 17  EELDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYA 76
Query: 147 FSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVE 206
           FS++NW RPE EV ++M+L  + +K      I + +++  IG T KLPK   E + N  E
Sbjct: 77  FSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKE 136
Query: 207 TTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFP 266
            T NNT  +LI A++Y G+ +LV + + +  ++    +  + + E+ I   L T   ++P
Sbjct: 137 KTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYINNHLMT--KDYP 194
Query: 267 YPDLLIRTS 275
            P+LLIRTS
Sbjct: 195 DPELLIRTS 203

>pdb|1UEH|A Chain A, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex With Triton X- 100, Magnesium And Sulfate Length = 253

Iteration: 1
 Score =  137 bits (344), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 105/181 (58%), Gaps = 4/181 (2%)
Query: 96  RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRP 155
           RHVA+IMDGN RWA  +G     G++AG KS++  V      GI  LT++AFSS+NW RP
Sbjct: 19  RHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRP 78
Query: 156 EVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQ 215
             EV  LM L    +  E +S  R  +R+ +IGDTS+    L+E +      T  NT   
Sbjct: 79  AQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLT 138
Query: 216 LIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYP-DLLIRT 274
           L +A +Y G++D+VQ  +++A KV+ G ++P+ + E ++ Q +   C     P DL+IRT
Sbjct: 139 LNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHV---CMHELAPVDLVIRT 195
Query: 275 S 275
Sbjct: 196 G 196

>pdb|1X08|A Chain A, Crystal Structure Of D26a Mutant Upps In Complex With Mg, Ipp And Fspp Length = 253

Iteration: 1
 Score =  134 bits (336), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 70/181 (38%), Positives = 104/181 (57%), Gaps = 4/181 (2%)
Query: 96  RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRP 155
           RHVA+IM GN RWA  +G     G++AG KS++  V      GI  LT++AFSS+NW RP
Sbjct: 19  RHVAIIMAGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRP 78
Query: 156 EVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQ 215
             EV  LM L    +  E +S  R  +R+ +IGDTS+    L+E +      T  NT   
Sbjct: 79  AQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLT 138
Query: 216 LIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYP-DLLIRT 274
           L +A +Y G++D+VQ  +++A KV+ G ++P+ + E ++ Q +   C     P DL+IRT
Sbjct: 139 LNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHV---CMHELAPVDLVIRT 195
Query: 275 S 275
Sbjct: 196 G 196

>pdb|1JP3|A Chain A, Structure Of E.Coli Undecaprenyl Pyrophosphate Synthase Length = 253

Iteration: 1
 Score =  130 bits (327), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 69/181 (38%), Positives = 102/181 (56%), Gaps = 4/181 (2%)
Query: 96  RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRP 155
           RHVA+I DGN RWA  +G     G++AG KS++  V      GI  LT++AFSS+NW RP
Sbjct: 19  RHVAIIXDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRP 78
Query: 156 EVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQ 215
             EV  L  L    +  E +S  R  +R+ +IGDTS+    L+E +      T  NT   
Sbjct: 79  AQEVSALXELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLT 138
Query: 216 LIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYP-DLLIRT 274
           L +A +Y G++D+VQ  +++A KV+ G ++P+ + E  + Q +   C     P DL+IRT
Sbjct: 139 LNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEXLNQHV---CXHELAPVDLVIRT 195
Query: 275 S 275
Sbjct: 196 G 196

>pdb|1F75|A Chain A, Crystal Structure Of Undecaprenyl Diphosphate Synthase From Micrococcus Luteus B-P 26 Length = 249

Iteration: 1
 Score =  127 bits (319), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 107/182 (58%), Gaps = 2/182 (1%)
Query: 94  MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF 153
           +P+H+A+IMDGN RWA  + +P   G+  G+++++ +       G++ LT++AFS++NW 
Sbjct: 20  IPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWS 79
Query: 154 RPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213
           RP+ EV +LM L    +       I + +++  IG    LP   ++ V+   E TK+NT 
Sbjct: 80  RPKDEVNYLMKLPGDFLNTFLPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTG 139
Query: 214 FQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIR 273
             L+ A++Y G+ +++ A Q IA + K G I  +++SE+   + L T     P P+LLIR
Sbjct: 140 LTLVFALNYGGRKEIISAVQLIAERYKSGEISLDEISETHFNEYLFT--ANMPDPELLIR 197
Query: 274 TS 275
           TS
Sbjct: 198 TS 199

>pdb|3UGS|B Chain B, Crystal Structure Of A Probable Undecaprenyl Diphosphate Synthase (Upps) From Campylobacter Jejuni Length = 225

Iteration: 1
 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 91/143 (63%)
Query: 96  RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRP 155
           +H+AV+MDGNRRWA  +G     GY  GVK+++ L+E+C +  I  L++FAFS++NW RP
Sbjct: 8   KHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTENWKRP 67
Query: 156 EVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQ 215
           + E++F+  LL+  + E  E F +  +R+  IGD S+L   + E +  V E TK+     
Sbjct: 68  KDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRLEDKVREKITLVEEKTKHCDALC 127
Query: 216 LIVAVSYSGQYDLVQACQRIAMK 238
           + +A+SY  + ++++A +R+  K
Sbjct: 128 VNLAISYGARDEIIRAAKRVIEK 150

>pdb|2D2R|A Chain A, Crystal Structure Of Helicobacter Pylori Undecaprenyl Pyrophosphate Synthase Length = 245

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 113/198 (57%), Gaps = 19/198 (9%)
Query: 85  LAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTV 144
           L+E+L  +S  +H+A+IMDGN RWA L+      G++ GVK+LK +   C    +  LT+
Sbjct: 8   LSEKL--DSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTL 65
Query: 145 FAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINV 204
           +AFS++NW RP+ EV+FLM +L+  +K+E+ +++   IR   IGD     K L + ++ +
Sbjct: 66  YAFSTENWKRPKSEVDFLMKMLKKYLKDERSTYLDNNIRFRAIGDLEGFSKELRDTILQL 125
Query: 205 VETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIE--PNDVS-----ESLIEQE 257
              T++   F  ++A++Y  + +L +A +         L+E  P+++S     E+ I   
Sbjct: 126 ENDTRHFKDFTQVLALNYGSKNELSRAFK--------SLLESPPSNISLLESLENEISNR 177
Query: 258 LETNCTEFPYPDLLIRTS 275
           L+T     P  DLL+RT 
Sbjct: 178 LDTR--NLPEVDLLLRTG 193

>pdb|2VG2|A Chain A, Rv2361 With Ipp Length = 284

Iteration: 1
 Score =  101 bits (251), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 103/192 (53%), Gaps = 2/192 (1%)
Query: 84  ALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLT 143
           A A  +  + +P HVA++MDGN RWA  RGL    G++ G   +  +     + GI+ L+
Sbjct: 45  AAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLS 104
Query: 144 VFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVIN 203
           ++AFS++NW R   EV FLM      V+  +++  +  +RI  +G   +L + +   +  
Sbjct: 105 LYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINELAV 164
Query: 204 VVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCT 263
             E TK+N    +   V+Y G+ ++ +A + IA +V  G + P  ++ES I + L+    
Sbjct: 165 AEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNPERITESTIARHLQR--P 222
Query: 264 EFPYPDLLIRTS 275
           + P  DL +RTS
Sbjct: 223 DIPDVDLFLRTS 234

>pdb|2VG1|A Chain A, Rv1086 E,E-Farnesyl Diphosphate Complex Length = 228

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 5/186 (2%)
Query: 93  SMPRHVAVIMDGNRRWAHLRGL-PVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDN 151
            +PRH+AV+ DGNRRWA   G   V  GY  G   +  ++  C + GI + TV+  S++N
Sbjct: 2   DLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTEN 61
Query: 152 WFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNN 211
             R   E+  L+ ++   V+E         +R   +GD   + +     +   VE+T   
Sbjct: 62  LQRDPDELAALIEIITDVVEEICAPANHWSVR--TVGDLGLIGEEPARRLRGAVESTPEV 119
Query: 212 TRFQLIVAVSYSGQYDLVQACQRIAMK-VKDGLIEPNDVSESLIEQELETNCTEF-PYPD 269
             F + VAV Y G+ ++V A + +  K + +G      V    +E   E   T   P PD
Sbjct: 120 ASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQPDPD 179
Query: 270 LLIRTS 275
           L+IRTS
Sbjct: 180 LVIRTS 185

>pdb|2VFW|A Chain A, Rv1086 Native Length = 227

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 5/186 (2%)
Query: 93  SMPRHVAVIMDGNRRWAHLRGL-PVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDN 151
            +PRH+AV+ DGNRRWA   G   V  GY  G   +  ++  C + GI + TV+  S++N
Sbjct: 1   DLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTEN 60
Query: 152 WFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNN 211
             R   E+  L+ ++   V+E         +R   +GD   + +     +   VE+T   
Sbjct: 61  LQRDPDELAALIEIITDVVEEICAPANHWSVR--TVGDLGLIGEEPARRLRGAVESTPEV 118
Query: 212 TRFQLIVAVSYSGQYDLVQACQRIAMK-VKDGLIEPNDVSESLIEQELETNCTEF-PYPD 269
             F + VAV Y G+ ++V A + +  K + +G      V    +E   E   T   P PD
Sbjct: 119 ASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQPDPD 178
Query: 270 LLIRTS 275
           L+IRTS
Sbjct: 179 LVIRTS 184

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	275
3qas_B	253	Undecaprenyl pyrophosphate synthase; alpha-helix,	5e-87
1f75_A	249	Undecaprenyl pyrophosphate synthetase; parallel be	8e-86
2vg3_A	284	Undecaprenyl pyrophosphate synthetase; transferase	4e-82
2d2r_A	245	Undecaprenyl pyrophosphate synthase; prenyltransfe	6e-80
2vg0_A	227	Short-chain Z-isoprenyl diphosphate synthetase; pe	1e-76
3ugs_B	225	Undecaprenyl pyrophosphate synthase; niaid, csgid,	2e-76

>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A* Length = 253

 Score =  258 bits (663), Expect = 5e-87
 Identities = 74/198 (37%), Positives = 111/198 (56%), Gaps = 3/198 (1%)

Query: 78  FTSDAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKW 137
             S    L+E+L      RHVA+IMDGN RWA  +G     G++AG KS++  V      
Sbjct: 2   MLSATQPLSEKLP-AHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANN 60

Query: 138 GIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCL 197
           GI  LT++AFSS+NW RP  EV  LM L    +  E +S  R  +R+ +IGDTS+    L
Sbjct: 61  GIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRL 120

Query: 198 EELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQE 257
           +E +      T  NT   L +A +Y G++D+VQ  +++A KV+ G ++P+ + E ++ Q 
Sbjct: 121 QERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQH 180

Query: 258 LETNCTEFPYPDLLIRTS 275
           +  +  E    DL+IRT 
Sbjct: 181 VCMH--ELAPVDLVIRTG 196

>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1 Length = 249

 Score =  255 bits (654), Expect = 8e-86
 Identities = 63/199 (31%), Positives = 108/199 (54%), Gaps = 2/199 (1%)

Query: 77  KFTSDAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCK 136
                       +    +P+H+A+IMDGN RWA  + +P   G+  G+++++ +      
Sbjct: 3   PIKKRKAIKNNNINAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASD 62

Query: 137 WGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKC 196
            G++ LT++AFS++NW RP+ EV +LM L    +       I + +++  IG    LP  
Sbjct: 63  LGVKYLTLYAFSTENWSRPKDEVNYLMKLPGDFLNTFLPELIEKNVKVETIGFIDDLPDH 122

Query: 197 LEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQ 256
            ++ V+   E TK+NT   L+ A++Y G+ +++ A Q IA + K G I  +++SE+   +
Sbjct: 123 TKKAVLEAKEKTKHNTGLTLVFALNYGGRKEIISAVQLIAERYKSGEISLDEISETHFNE 182

Query: 257 ELETNCTEFPYPDLLIRTS 275
            L T     P P+LLIRTS
Sbjct: 183 YLFTA--NMPDPELLIRTS 199

>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Length = 284

 Score =  247 bits (633), Expect = 4e-82
 Identities = 60/194 (30%), Positives = 104/194 (53%), Gaps = 2/194 (1%)

Query: 82  APALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRV 141
           + A A  +  + +P HVA++MDGN RWA  RGL    G++ G   +  +     + GI+ 
Sbjct: 43  SKAAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKW 102

Query: 142 LTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV 201
           L+++AFS++NW R   EV FLM      V+  +++  +  +RI  +G   +L + +   +
Sbjct: 103 LSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINEL 162

Query: 202 INVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETN 261
               E TK+N    +   V+Y G+ ++ +A + IA +V  G + P  ++ES I + L+  
Sbjct: 163 AVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNPERITESTIARHLQRP 222

Query: 262 CTEFPYPDLLIRTS 275
             + P  DL +RTS
Sbjct: 223 --DIPDVDLFLRTS 234

>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A Length = 245

 Score =  240 bits (615), Expect = 6e-80
 Identities = 62/196 (31%), Positives = 107/196 (54%), Gaps = 5/196 (2%)

Query: 80  SDAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGI 139
           S    L+E+L      +H+A+IMDGN RWA L+      G++ GVK+LK +   C    +
Sbjct: 3   SATQPLSEKLDS--TLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKL 60

Query: 140 RVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEE 199
             LT++AFS++NW RP+ EV+FLM +L+  +K+E+ +++   IR   IGD     K L +
Sbjct: 61  ECLTLYAFSTENWKRPKSEVDFLMKMLKKYLKDERSTYLDNNIRFRAIGDLEGFSKELRD 120

Query: 200 LVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELE 259
            ++ +   T++   F  ++A++Y  + +L +A + +       +    +  E+ I   L+
Sbjct: 121 TILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESPPSNISLL-ESLENEISNRLD 179

Query: 260 TNCTEFPYPDLLIRTS 275
           T     P  DLL+RT 
Sbjct: 180 TR--NLPEVDLLLRTG 193

>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A* Length = 227

 Score =  231 bits (592), Expect = 1e-76
 Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 9/187 (4%)

Query: 94  MPRHVAVIMDGNRRWAHLRGLP-VGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNW 152
           +PRH+AV+ DGNRRWA   G   V  GY  G   +  ++  C + GI + TV+  S++N 
Sbjct: 2   LPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENL 61

Query: 153 FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNT 212
            R   E+  L+ ++   V+E           +  +GD   + +     +   VE+T    
Sbjct: 62  QRDPDELAALIEIITDVVEEICAP--ANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVA 119

Query: 213 RFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEP----NDVSESLIEQELETNCTEFPYP 268
            F + VAV Y G+ ++V A + +  K            + V+   I + L T+    P P
Sbjct: 120 SFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTS--GQPDP 177

Query: 269 DLLIRTS 275
           DL+IRTS
Sbjct: 178 DLVIRTS 184

>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} Length = 225

 Score =  230 bits (590), Expect = 2e-76
 Identities = 60/181 (33%), Positives = 104/181 (57%), Gaps = 11/181 (6%)

Query: 95  PRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFR 154
            +H+AV+MDGNRRWA  +G     GY  GVK+++ L+E+C +  I  L++FAFS++NW R
Sbjct: 7   LKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTENWKR 66

Query: 155 PEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRF 214
           P+ E++F+  LL+  + E  E F +  +R+  IGD S+L   + E +  V E TK+    
Sbjct: 67  PKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRLEDKVREKITLVEEKTKHCDAL 126

Query: 215 QLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIRT 274
            + +A+SY  + ++++A +R+  K         +++E  + Q L+         DL++R 
Sbjct: 127 CVNLAISYGARDEIIRAAKRVIEKKL-------ELNEENLTQNLDLP----LDVDLMLRV 175

Query: 275 S 275
            
Sbjct: 176 G 176

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	275
4h8e_A	256	Undecaprenyl pyrophosphate synthase; alpha-helix,	100.0
3sgv_B	253	Undecaprenyl pyrophosphate synthase; alpha/beta, t	100.0
3ugs_B	225	Undecaprenyl pyrophosphate synthase; niaid, csgid,	100.0
1f75_A	249	Undecaprenyl pyrophosphate synthetase; parallel be	100.0
2vg3_A	284	Undecaprenyl pyrophosphate synthetase; transferase	100.0
3qas_B	253	Undecaprenyl pyrophosphate synthase; alpha-helix,	100.0
2d2r_A	245	Undecaprenyl pyrophosphate synthase; prenyltransfe	100.0
2vg0_A	227	Short-chain Z-isoprenyl diphosphate synthetase; pe	100.0

>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=2.3e-68  Score=485.23  Aligned_cols=189  Identities=37%  Similarity=0.646  Sum_probs=182.7

Q ss_pred             HHHhccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHH
Q 044091           85 LAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMS  164 (275)
Q Consensus        85 l~~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~  164 (275)
                      +..+++.+++|+||||||||||||||++|+++.+||++|++++.++++||.++||++|||||||+|||+||++||++||+
T Consensus        15 ~~~~~~~~~iP~HVAiIMDGN~RwAk~rgl~r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~   94 (256)
T 4h8e_A           15 YNEELDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMN   94 (256)
T ss_dssp             ----CCTTCCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHHH
T ss_pred             hHHhccCCCCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHHH
Confidence            34568889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCC
Q 044091          165 LLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLI  244 (275)
Q Consensus       165 l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l  244 (275)
                      |+.++|.+..+.+.++|||||++||++.||+++++.++++|+.|++|++++||||++||||+||++|+|+++++|++|.+
T Consensus        95 L~~~~l~~~~~~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~i~~~v~~g~l  174 (256)
T 4h8e_A           95 LPVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGL  174 (256)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHTTTCCSCEEEEEEEECHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcCeEEEEecCcccCCHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCHHHHHHHHHHHHHHHHcCCC
Confidence            99999999888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          245 EPNDVSESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       245 ~~edI~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      +++||||+.|+++||++  ++||||||||||
T Consensus       175 ~~~~I~e~~i~~~L~t~--~~PdpDLlIRTs  203 (256)
T 4h8e_A          175 NSDIIDETYINNHLMTK--DYPDPELLIRTS  203 (256)
T ss_dssp             CGGGCCHHHHHTTSTTT--TSCCCSEEEECS
T ss_pred             ChhhCCHHHHHHhCCCC--CCCCCcEEEEcC
Confidence            99999999999999998  999999999998

>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...

Probab=100.00  E-value=5.8e-68  Score=481.91  Aligned_cols=184  Identities=38%  Similarity=0.613  Sum_probs=169.7

Q ss_pred             cCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHh
Q 044091           90 QRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESG  169 (275)
Q Consensus        90 ~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~  169 (275)
                      .+.++|+||||||||||||||++|+++.+||++|++++.++++||.++||++|||||||+||||||++||++||+|+.++
T Consensus        13 ~~~~iP~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~~~   92 (253)
T 3sgv_B           13 LPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWA   92 (253)
T ss_dssp             CCTTCCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-----------CHHHHHHHHTT
T ss_pred             cCCCCCCEEEEEecCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhccCCCHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Q 044091          170 VKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDV  249 (275)
Q Consensus       170 l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI  249 (275)
                      |.++.+.++++|||||++||++.||+++++.++++|+.|++|++++||||++||||+||++|+|+++++|++|.+++++|
T Consensus        93 l~~~~~~l~~~~vrvr~iGd~~~Lp~~l~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~ia~~v~~g~l~~~~I  172 (253)
T 3sgv_B           93 LDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQI  172 (253)
T ss_dssp             HHHHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHHHHHTSSCGGGC
T ss_pred             HHHHHHHHHHCCeEEEEEeehhhCCHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChhhC
Confidence            99988899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          250 SESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       250 ~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      ||+.|+++||++  ++||||||||||
T Consensus       173 ~e~~i~~~L~t~--~~PdpDLlIRTs  196 (253)
T 3sgv_B          173 DEEMLNQHVCMH--ELAPVDLVIRTG  196 (253)
T ss_dssp             CHHHHHTTSTTT--TSCCCCEEEEES
T ss_pred             CHHHHHHhhccc--CCCCCcEEEEec
Confidence            999999999998  999999999998

>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0

Probab=100.00  E-value=4.9e-65  Score=455.86  Aligned_cols=173  Identities=34%  Similarity=0.638  Sum_probs=154.1

Q ss_pred             CCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHH
Q 044091           92 ESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVK  171 (275)
Q Consensus        92 ~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~  171 (275)
                      ..+|+||||||||||||||++|+++.+||++|++++.++++||.++||++|||||||||||+||++||++||+|+.++|.
T Consensus         4 m~~P~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~Lm~L~~~~l~   83 (225)
T 3ugs_B            4 MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLD   83 (225)
T ss_dssp             CCCCCEEEEEECCCC--------------CHHHHHHHHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEeccCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCH
Q 044091          172 EEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSE  251 (275)
Q Consensus       172 ~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e  251 (275)
                      ++.+.++++|||||++||+++||+++++.++++|+.|++|++++||||++||||+||++|+|++   |++|    ++|||
T Consensus        84 ~~~~~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~A~~~i---v~~g----~~I~e  156 (225)
T 3ugs_B           84 EALEKFEKNNVRLRAIGDLSRLEDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRV---IEKK----LELNE  156 (225)
T ss_dssp             HHHHHSTTTTEEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHH---HHTT----CCCSH
T ss_pred             HHHHHHHHCCcEEEEEeChHhCCHHHHHHHHHHHHHhcCCCCcEEEEeeCCCCHHHHHHHHHHH---HHhc----CcCCH
Confidence            9888999999999999999999999999999999999999999999999999999999999999   5566    89999


Q ss_pred             HHHHhhhhcCCCCCCCCcEEEecC
Q 044091          252 SLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       252 ~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      +.|+++||++    ||||||||||
T Consensus       157 ~~i~~~L~t~----PdpDLlIRTs  176 (225)
T 3ugs_B          157 ENLTQNLDLP----LDVDLMLRVG  176 (225)
T ss_dssp             HHHHHTSSSC----SCCSEEEEES
T ss_pred             HHHHHhcCCC----CCCCEEEEeC
Confidence            9999999983    9999999998

>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1

Probab=100.00  E-value=2.2e-65  Score=465.26  Aligned_cols=185  Identities=34%  Similarity=0.625  Sum_probs=169.1

Q ss_pred             ccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHH
Q 044091           89 LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLES  168 (275)
Q Consensus        89 l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~  168 (275)
                      ++.+++|+||||||||||||||++|+++.+||.+|++++.++++||.++||++|||||||+|||+||++||+.||+++.+
T Consensus        15 ~~~~~iP~HVAiImDGN~RwA~~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~   94 (249)
T 1f75_A           15 INAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLPGD   94 (249)
T ss_dssp             CCSTTSCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC------------CGGGTHHHH
T ss_pred             cccCCCCCEEEEEecCCcHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEecccccCCCHHHHHHHHHHHHH
Confidence            55678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 044091          169 GVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPND  248 (275)
Q Consensus       169 ~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~ed  248 (275)
                      ++.+..+.+.++||||+++||++.||+++++.++++++.|++|++++||||++||||+||++|+|+++++|++|.++++|
T Consensus        95 ~l~~~~~~l~~~~vr~~~iG~~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~eIv~A~r~l~~~v~~g~l~~~~  174 (249)
T 1f75_A           95 FLNTFLPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLTLVFALNYGGRKEIISAVQLIAERYKSGEISLDE  174 (249)
T ss_dssp             HHHHHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHTTTTCCSCEEEEECSCCHHHHHHHHHHHHHHHHHTTSSCGGG
T ss_pred             HHHHHHHHHHHcCeEEEEeCChhhCCHHHHHHHHHHHHhhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChHh
Confidence            99988888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          249 VSESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       249 I~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      |||++|+++|++.  ++||||||||||
T Consensus       175 I~e~~i~~~L~t~--~~PdpDLlIRTs  199 (249)
T 1f75_A          175 ISETHFNEYLFTA--NMPDPELLIRTS  199 (249)
T ss_dssp             CSHHHHGGGSTTT--TSCCCSEEEECT
T ss_pred             CCHHHHHHhhccC--CCCCCcEEEEcC
Confidence            9999999999998  899999999998

>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A

Probab=100.00  E-value=7.5e-65  Score=468.53  Aligned_cols=190  Identities=32%  Similarity=0.549  Sum_probs=184.0

Q ss_pred             HHHHhccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHH
Q 044091           84 ALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLM  163 (275)
Q Consensus        84 ~l~~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm  163 (275)
                      .+...++.+++|+||||||||||||||++|+++.+||++|++++.++++||.++||++||||+||+||||||++||+.||
T Consensus        45 ~~~~~~~~~~iP~HVAIIMDGN~RwAk~rgl~r~~GH~~G~~~l~~iv~~c~~lGI~~LTlYaFStENwkRp~~EV~~Lm  124 (284)
T 2vg3_A           45 AAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLM  124 (284)
T ss_dssp             CCCCCCCTTTSCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEETTGGGSCHHHHHHHH
T ss_pred             hhhhhcccCCCCCEEEEEecCChHHHHHcCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHH
Confidence            34455667789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCC
Q 044091          164 SLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGL  243 (275)
Q Consensus       164 ~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~  243 (275)
                      +++.++|.++.+.+.+++||||++||++.||+++++.++++++.|++|++++||||++||||+||++|+|+++++|++|.
T Consensus       125 ~L~~~~l~~~~~~l~~~~vrvrviG~~~~lp~~~~~~i~~ae~~T~~n~~l~Lnia~~YgGR~EIv~A~r~la~~v~~g~  204 (284)
T 2vg3_A          125 GFNRDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGR  204 (284)
T ss_dssp             HHHHHHHHHHHHHHHHTTEEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHcCeEEEEeCChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCC
Confidence            99999999888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          244 IEPNDVSESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       244 l~~edI~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      ++++||||++|+++|++.  ++||||||||||
T Consensus       205 l~~~dI~e~~i~~~L~t~--~~PdPDLlIRTs  234 (284)
T 2vg3_A          205 LNPERITESTIARHLQRP--DIPDVDLFLRTS  234 (284)
T ss_dssp             SCGGGCCHHHHHHHSSST--TCCCCSEEEECT
T ss_pred             CChHHCCHHHHHHHhccC--CCCCCcEEEeCC
Confidence            999999999999999998  999999999998

>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*

Probab=100.00  E-value=1.3e-64  Score=460.86  Aligned_cols=187  Identities=39%  Similarity=0.640  Sum_probs=160.7

Q ss_pred             HhccCCCCC----CEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHH
Q 044091           87 EELQRESMP----RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFL  162 (275)
Q Consensus        87 ~~l~~~~iP----rHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~L  162 (275)
                      ..++.+++|    +||||||||||||||++|+++.+||.+|++++.++++||.++||++|||||||+||||||++||+.|
T Consensus         6 ~~l~~~~iP~~~~~HVAiImDGN~RwAk~~gl~r~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFStENwkRp~~EV~~L   85 (253)
T 3qas_B            6 TQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSAL   85 (253)
T ss_dssp             -------CCTTCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCC-------------
T ss_pred             cccccCCCCCCCCCEEEEEecCCHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHCCCCEEEEEEecCcccCCCHHHHHHH
Confidence            345667899    9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcC
Q 044091          163 MSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDG  242 (275)
Q Consensus       163 m~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g  242 (275)
                      |+++.++|.+..+.+.+++||||++||++.||+++++.++++++.|++|++++||||++||||+||++|+|+++++|++|
T Consensus        86 m~l~~~~l~~~~~~l~~~~vrlr~iG~~~~lp~~~~~~i~~a~~~T~~n~~l~lnia~~YgGR~EIv~A~r~l~~~v~~g  165 (253)
T 3qas_B           86 MELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQG  165 (253)
T ss_dssp             ----CTHHHHHHHHHHHTTCEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHCCeEEEEeCChHhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcC
Confidence            99999999998888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          243 LIEPNDVSESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       243 ~l~~edI~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      .++++||||+.|+++|++.  ++||||||||||
T Consensus       166 ~l~~~~I~e~~i~~~L~t~--~~PdpDLlIRTs  196 (253)
T 3qas_B          166 NLQPDQIDEEMLNQHVCMH--ELAPVDLVIRTG  196 (253)
T ss_dssp             SCCGGGCCHHHHHTTSTTT--TSCCCCEEEECS
T ss_pred             CCChHHCCHHHHHHhhccC--CCCCCcEEEEcC
Confidence            9999999999999999998  899999999998

>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A

Probab=100.00  E-value=1e-64  Score=459.86  Aligned_cols=181  Identities=33%  Similarity=0.607  Sum_probs=167.1

Q ss_pred             CCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHH
Q 044091           92 ESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVK  171 (275)
Q Consensus        92 ~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~  171 (275)
                      +++|+||||||||||||||++|+++.+||.+|++++.++++||.++||++|||||||+||||||++||+.||+++.+++.
T Consensus        13 ~~iP~HVAiImDGN~RwAk~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~l~   92 (245)
T 2d2r_A           13 DSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLK   92 (245)
T ss_dssp             -CCCCEEEEECCCHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC----------CHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEecCchHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCH
Q 044091          172 EEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSE  251 (275)
Q Consensus       172 ~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e  251 (275)
                      +..+.+.++||||+++||++.||+++++.+.++++.|++|++++||||++||||+||++|+|+++++|++ .++|+||||
T Consensus        93 ~~~~~l~~~~vrl~~iG~~~~lp~~~~~~i~~a~~~T~~n~~l~lnia~~YggR~EIv~A~r~i~~~v~~-~l~~~~I~e  171 (245)
T 2d2r_A           93 DERSTYLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESPPS-NISLLESLE  171 (245)
T ss_dssp             HHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHSCCT-TGGGCSCCH
T ss_pred             HHHHHHHHcCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHh-cCChhhCCH
Confidence            9888899999999999999999999999999999999999999999999999999999999999999988 999999999


Q ss_pred             HHHHhhhhcCCCCCCCCcEEEecC
Q 044091          252 SLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       252 ~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      +.|+++|++.  ++||||||||||
T Consensus       172 ~~i~~~L~t~--~~PdpDLlIRTs  193 (245)
T 2d2r_A          172 NEISNRLDTR--NLPEVDLLLRTG  193 (245)
T ss_dssp             HHHHTTSTTT--TSCCCSEEEECS
T ss_pred             HHHHHHhccC--CCCCCcEEEEcC
Confidence            9999999998  999999999998

>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*

Probab=100.00  E-value=5e-64  Score=451.00  Aligned_cols=179  Identities=31%  Similarity=0.485  Sum_probs=174.2

Q ss_pred             CCCCEEEEEecCCchHHHHcC-CCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHH
Q 044091           93 SMPRHVAVIMDGNRRWAHLRG-LPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVK  171 (275)
Q Consensus        93 ~iPrHIAiImDGNRRwAk~~g-l~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~  171 (275)
                      ++|+||||||||||||||++| +++.+||.+|++++.++++||.++||++||||+||+||||||++||+.||+++.+++.
T Consensus         1 ~iP~HvAiImDGN~RwA~~~g~l~~~~GH~~G~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev~~Lm~l~~~~l~   80 (227)
T 2vg0_A            1 DLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVE   80 (227)
T ss_dssp             CCCSEEEEECCCHHHHHHHTTCSCTHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEecCChHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHHHHHHHHHHHHHH
Confidence            589999999999999999999 9999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCC---
Q 044091          172 EEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPND---  248 (275)
Q Consensus       172 ~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~ed---  248 (275)
                      +..+.  +++|||+++||++.||+++++.++++++.|++|++++||||++||||+||++|+|+++++|++|.++++|   
T Consensus        81 ~~~~~--~~~vrv~~iG~~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~eI~~A~r~l~~~v~~g~l~~~~~~~  158 (227)
T 2vg0_A           81 EICAP--ANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVD  158 (227)
T ss_dssp             HHTCT--TTCCEEEEESCGGGSCHHHHHHHHHHHHTSCSSCSCEEEEEEEECHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHhcc--ccCeEEEecCChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChhHhhc
Confidence            76543  7899999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             -CCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          249 -VSESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       249 -I~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                       |||+.|+++|++.  ++||||||||||
T Consensus       159 ~I~e~~i~~~L~t~--~~pdpDLlIRTs  184 (227)
T 2vg0_A          159 AVTVEGISENLYTS--GQPDPDLVIRTS  184 (227)
T ss_dssp             HCCHHHHHHHSTTT--TSCCCSEEEECT
T ss_pred             cCCHHHHHHhhccC--CCCCCcEEEEcC
Confidence             9999999999997  999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	275
d1ueha_	228	c.101.1.1 (A:) Undecaprenyl diphosphate synthase {	2e-47
d1f75a_	229	c.101.1.1 (A:) Undecaprenyl diphosphate synthase {	1e-39

>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]} Length = 228

class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Escherichia coli [TaxId: 562]

 Score =  155 bits (393), Expect = 2e-47
 Identities = 69/182 (37%), Positives = 104/182 (57%), Gaps = 2/182 (1%)

Query: 94  MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF 153
             RHVA+IMDGN RWA  +G     G++AG KS++  V      GI  LT++AFSS+NW 
Sbjct: 5   GCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWN 64

Query: 154 RPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213
           RP  EV  LM L    +  E +S  R  +R+ +IGDTS+    L+E +      T  NT 
Sbjct: 65  RPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTG 124

Query: 214 FQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIR 273
             L +A +Y G++D+VQ  +++A KV+ G ++P+ + E ++ Q +  +       DL+IR
Sbjct: 125 LTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHE--LAPVDLVIR 182

Query: 274 TS 275
           T 
Sbjct: 183 TG 184

>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]} Length = 229

class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Micrococcus luteus [TaxId: 1270]

 Score =  136 bits (342), Expect = 1e-39
 Identities = 62/187 (33%), Positives = 107/187 (57%), Gaps = 2/187 (1%)

Query: 89  LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFS 148
           +    +P+H+A+IMDGN RWA  + +P   G+  G+++++ +       G++ LT++AFS
Sbjct: 2   INAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFS 61

Query: 149 SDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETT 208
           ++NW RP+ EV +LM L    +       I + +++  IG    LP   ++ V+   E T
Sbjct: 62  TENWSRPKDEVNYLMKLPGDFLNTFLPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKT 121

Query: 209 KNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYP 268
           K+NT   L+ A++Y G+ +++ A Q IA + K G I  +++SE+   + L       P P
Sbjct: 122 KHNTGLTLVFALNYGGRKEIISAVQLIAERYKSGEISLDEISETHFNEYL--FTANMPDP 179

Query: 269 DLLIRTS 275
           +LLIRTS
Sbjct: 180 ELLIRTS 186

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	275
d1ueha_	228	Undecaprenyl diphosphate synthase {Escherichia col	100.0
d1f75a_	229	Undecaprenyl diphosphate synthase {Micrococcus lut	100.0
d1hl2a_	295	N-acetylneuraminate lyase {Escherichia coli [TaxId	86.85
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	81.92
d1i60a_	278	Hypothetical protein IolI {Bacillus subtilis [TaxI	81.41
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	81.01

>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.1e-65  Score=454.29  Aligned_cols=182  Identities=38%  Similarity=0.624  Sum_probs=164.9

Q ss_pred             CCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHH
Q 044091           92 ESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVK  171 (275)
Q Consensus        92 ~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~  171 (275)
                      ...|+||||||||||||||++|++..+||.+|++++.++++||.++||++|||||||+|||+||++||+.||+++.+++.
T Consensus         3 ~~~P~HiaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~ii~~~~~~gI~~lTvYaFStEN~~R~~~Ev~~Lm~l~~~~l~   82 (228)
T d1ueha_           3 AHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALD   82 (228)
T ss_dssp             TTCCCEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEC--------------CHHHHHHHH
T ss_pred             CCCCCEEEEeccCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCcEEEeehhhhhhcccccchhHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCH
Q 044091          172 EEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSE  251 (275)
Q Consensus       172 ~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e  251 (275)
                      +..+.+.+++|+|+|+||++.||+++++.++++|+.|++|++++||||++||||+||++|++++++++.+|.+.+++||+
T Consensus        83 ~~~~~~~~~~i~i~~iG~~~~lp~~~~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~~~~~~~~~~~~i~~  162 (228)
T d1ueha_          83 SEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDE  162 (228)
T ss_dssp             HTHHHHHHTTCEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSCEEEEEESCCHHHHHHHHHHHHHHHHHTTSCCGGGCCH
T ss_pred             HhHHHHHhccEEEEEECCcchhhhhhhhhhhhHHHhccCCCCceEEEEeccccchHHHHHHHHHHHHHHhCCCCHhHhhh
Confidence            88888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhcCCCCCCCCcEEEecC
Q 044091          252 SLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       252 ~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      +.|+++||++  ++||||||||||
T Consensus       163 ~~~~~~l~~~--~~pdpDLlIRTs  184 (228)
T d1ueha_         163 EMLNQHVCMH--ELAPVDLVIRTG  184 (228)
T ss_dssp             HHHHTTSTTT--TSCCCCEEEECS
T ss_pred             hheecccccC--CCCCCcEEEecC
Confidence            9999999998  999999999998

>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]}

class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Micrococcus luteus [TaxId: 1270]

Probab=100.00  E-value=3.6e-65  Score=456.82  Aligned_cols=185  Identities=34%  Similarity=0.625  Sum_probs=170.0

Q ss_pred             ccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHH
Q 044091           89 LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLES  168 (275)
Q Consensus        89 l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~  168 (275)
                      |+.+++|+||||||||||||||++|+++.+||++|++++.++++||.++||++|||||||+|||+||++||+.||+++.+
T Consensus         2 i~~~~lP~HvAiImDGNrRwAk~~g~~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafSteN~~R~~~Ev~~Lm~l~~~   81 (229)
T d1f75a_           2 INAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLPGD   81 (229)
T ss_dssp             CCSTTSCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC------------CGGGTHHHH
T ss_pred             CCccCCCCeEEEeccCcHHHHHHCCCChhHHHHHHHHHHHHHHHHHHhcCCceEEEeeehhhhcccchHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 044091          169 GVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPND  248 (275)
Q Consensus       169 ~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~ed  248 (275)
                      ++.+..+.+.+++|+++++||++.||+++++.++++|+.|++|++++||||++||||+||++|++++++.+.+|.+.+++
T Consensus        82 ~l~~~~~~~~~~~iri~~iG~~~~lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~i~~~~~~~~~~~~~  161 (229)
T d1f75a_          82 FLNTFLPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLTLVFALNYGGRKEIISAVQLIAERYKSGEISLDE  161 (229)
T ss_dssp             HHHHHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHTTTTCCSCEEEEECSCCHHHHHHHHHHHHHHHHHTTSSCGGG
T ss_pred             HHHHHhhhhhhhcccchhhhhhhhhhHHHHHHHHHHHHHhcCCCCeEEEEeccCcchhhHHHHHHHHHhhhcccccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091          249 VSESLIEQELETNCTEFPYPDLLIRTS  275 (275)
Q Consensus       249 I~e~~i~~~L~t~~~~~PdPDLLIRTs  275 (275)
                      ||++.|+++|+++  ++||||||||||
T Consensus       162 i~e~~~~~~L~t~--~~PdpDLlIRTs  186 (229)
T d1f75a_         162 ISETHFNEYLFTA--NMPDPELLIRTS  186 (229)
T ss_dssp             CSHHHHGGGSTTT--TSCCCSEEEECT
T ss_pred             hhHhhHHHhcCCC--CCCCcceEEecC
Confidence            9999999999998  999999999998

>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Escherichia coli [TaxId: 562]

Probab=86.85  E-value=3.6  Score=34.26  Aligned_cols=125  Identities=14%  Similarity=0.085  Sum_probs=81.7

Q ss_pred             hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH
Q 044091          122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV  201 (275)
Q Consensus       122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i  201 (275)
                      --.+.+.+.++|+.+.|+..+.+....+|.+.=+.+|...+.+...+...        ..+.+ ++|-.+.=-++..+..
T Consensus        20 iD~~~l~~~i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~--------~~~pv-i~gv~~~s~~~~i~~a   90 (295)
T d1hl2a_          20 LDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAK--------GKIKL-IAHVGCVSTAESQQLA   90 (295)
T ss_dssp             BCHHHHHHHHHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT--------TTSEE-EEECCCSSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhc--------cccce-eeccccchhhHHHHHH
Confidence            33688999999999999999999999999999999999998887766442        33444 3343322133344444


Q ss_pred             HHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHHHHhcCCC--------CCCCCCHHHHHhhh
Q 044091          202 INVVETTKNNTRFQLIVAVSY--SGQYDLVQACQRIAMKVKDGLI--------EPNDVSESLIEQEL  258 (275)
Q Consensus       202 ~~~e~~T~~~~~~~lniai~Y--gGR~EIv~A~r~l~~~v~~g~l--------~~edI~e~~i~~~L  258 (275)
                      +.+++.   ..+..+.+.-.|  .+.+++++-.+++++.+....+        .--+++.+++.+-.
T Consensus        91 ~~a~~~---Gad~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~~~~l~~L~  154 (295)
T d1hl2a_          91 ASAKRY---GFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLTLDQINTLV  154 (295)
T ss_dssp             HHHHHH---TCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCCHHHHHHHH
T ss_pred             HHHHhc---CCceeeeeeccccCCChHHHHHHHHHHhcccCcCcccccccccccccccccccccccc
Confidence            444443   333333333333  5789999999998876543221        11357777776543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.92  E-value=4  Score=29.19  Aligned_cols=67  Identities=15%  Similarity=0.312  Sum_probs=41.4

Q ss_pred             ccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHH
Q 044091           89 LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLES  168 (275)
Q Consensus        89 l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~  168 (275)
                      +....+|++|+||=-|                ..|++    +.....++|.+ +|++..+..-+..-..|+...   +. 
T Consensus        16 l~~~~~p~~v~IiGgG----------------~ig~E----~A~~l~~~G~~-Vtlve~~~~il~~~d~~~~~~---l~-   70 (117)
T d1ebda2          16 LNLGEVPKSLVVIGGG----------------YIGIE----LGTAYANFGTK-VTILEGAGEILSGFEKQMAAI---IK-   70 (117)
T ss_dssp             HTCSSCCSEEEEECCS----------------HHHHH----HHHHHHHTTCE-EEEEESSSSSSTTSCHHHHHH---HH-
T ss_pred             hChhhcCCeEEEECCC----------------cccee----eeeeecccccE-EEEEEecceecccccchhHHH---HH-
Confidence            4667899999998554                35655    55666778966 888876654443333333321   12 


Q ss_pred             hHHHHHHHhhcCCcEEEE
Q 044091          169 GVKEEKESFIRERIRISV  186 (275)
Q Consensus       169 ~l~~~~~~~~~~~irvr~  186 (275)
                            +.+.++||+++.
T Consensus        71 ------~~l~~~GI~i~~   82 (117)
T d1ebda2          71 ------KRLKKKGVEVVT   82 (117)
T ss_dssp             ------HHHHHTTCEEEE
T ss_pred             ------HHHHhcCCEEEc
Confidence                  234567888776

>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Hypothetical protein IolI
species: Bacillus subtilis [TaxId: 1423]

Probab=81.41  E-value=3.6  Score=33.32  Aligned_cols=98  Identities=13%  Similarity=0.135  Sum_probs=59.1

Q ss_pred             CcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEe--cCCCCCC
Q 044091          117 GSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVI--GDTSKLP  194 (275)
Q Consensus       117 ~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~i--Gd~~~LP  194 (275)
                      ..++.+.++.+...++.|..+|++.+.+..... +...+.+|   .++.+.+.|+...+...+.||++-+-  |.....-
T Consensus        76 ~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~~~~-~~~~~~~~---~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~  151 (278)
T d1i60a_          76 EKGHNEIITEFKGMMETCKTLGVKYVVAVPLVT-EQKIVKEE---IKKSSVDVLTELSDIAEPYGVKIALEFVGHPQCTV  151 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCEEEEECCBC-SSCCCHHH---HHHHHHHHHHHHHHHHGGGTCEEEEECCCCTTBSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCccccccccC-CCCCCHHH---HHHHHHHHHHHHHHHHHHhCCeeeeeecccccccc
Confidence            346778899999999999999999998876432 33444443   23344455666667778899998873  4322222


Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEE
Q 044091          195 KCLEELVINVVETTKNNTRFQLIV  218 (275)
Q Consensus       195 ~~l~~~i~~~e~~T~~~~~~~lni  218 (275)
                      ......++-+++....+-++.+.+
T Consensus       152 ~~~~~~~~ll~~v~~~~vg~~~D~  175 (278)
T d1i60a_         152 NTFEQAYEIVNTVNRDNVGLVLDS  175 (278)
T ss_dssp             CSHHHHHHHHHHHCCTTEEEEEEH
T ss_pred             CCHHHHHHHHHHhhcccccccccc
Confidence            223333333444334444544443

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.01  E-value=12  Score=30.83  Aligned_cols=105  Identities=16%  Similarity=0.090  Sum_probs=71.5

Q ss_pred             hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH
Q 044091          122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV  201 (275)
Q Consensus       122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i  201 (275)
                      --.+.+++.++|+.+.||.-+.+...++|.+.=+.+|...+++...+...        ..+.+ +.|-.+.=.++..+..
T Consensus        25 iD~~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~--------~~~~v-i~g~~~~s~~~~i~~a   95 (296)
T d1xxxa1          25 LDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVG--------DRARV-IAGAGTYDTAHSIRLA   95 (296)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHT--------TTSEE-EEECCCSCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhc--------cccce-EeccccchhHHHHHHH
Confidence            44788999999999999999999889999999999999998887665432        23433 3444333234455555


Q ss_pred             HHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHHH
Q 044091          202 INVVETTKNNTRFQLIVAVSY--SGQYDLVQACQRIAMK  238 (275)
Q Consensus       202 ~~~e~~T~~~~~~~lniai~Y--gGR~EIv~A~r~l~~~  238 (275)
                      +.+++.   +-+..+-+.=.|  .+.++|++-.+++++.
T Consensus        96 ~~a~~~---Gad~v~i~~P~~~~~~~~~l~~~~~~v~~~  131 (296)
T d1xxxa1          96 KACAAE---GAHGLLVVTPYYSKPPQRGLQAHFTAVADA  131 (296)
T ss_dssp             HHHHHH---TCSEEEEECCCSSCCCHHHHHHHHHHHHTT
T ss_pred             HHHHHh---cCCeEEEEeccCCCCCHHHHHHHHHHHHHh
Confidence            555554   223222222222  3688999999999864