Citrus Sinensis ID: 044166

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37

KPSDISKVEDAQNFHIYYGQTFKVIKNAIDGRSYLLIQNNSRMAARTKYCTARIKSFVIPMSNYSVDTDFFPGKLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNKSEPLQFSQYAAHFTTDSDQPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPTGNYTITYFRNIAKGEGVVNIDAKMCDRDTSIPMEPTILPCQ

ccccEEEcEEEccEEEEEEccEEEEEEcccccEEEEEEcccccccccccccccEEEEEcEEEEEEEEcccHHHHHcccccccccccccccccHHHHHHHHcccEEEcccccccccccccEEEEccccccccccEEEEcccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEccEEEEccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHccccEEEEccccccccccccHHHHHcccccccccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccEEEccccccccccccccccccccc

cccccEEEEEcccEEEEEcccEEEEEccccccEEEEEEccccccccccccccEEEEEcccEEEEEccccHHHHHHHccccEEEEccccccccHHHHHHHHcccEEEcccccHHHHHHccccEEEEccccccccHHHHHHHcccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccEEEEcccHHHHHHHHHccccEEEcccccccEcccccccccccccHEccHHHHHHHHHcccccccccHHHHHHHHHccHHHHHHHHcccEEEcccccccccccccHccccccHHHHHHHHHHHHcccccccEEEEEEccccccEEEEccHHcccccccccccEEcccc

kpsdiskvedaqnfhIYYGQTFKVIKNAIDGRSYLLIQNNSRMAARTKYCTARIKSFvipmsnysvdtdffpgKLLGLLSSmkgmtsesvaSGCVLKlyqggeiglvnkseplqfsqyaahfttdsdqpqacnfanfapfgedgplrRAEWIKFLGIFANAEARANQVYNAVKENYLCLTrvaagktkpfkpIVAWMEFYNGVWSFTKEAFKLKYVedaggenvdssinkmtynisnsddLEQLHAILCTVDVVIdgtytlepanytqstfLENIDAADKSCFAFLTnqslwrfdkrnqnslaldwfdgavsqpQLVLADLTealfptgnytITYFRNIakgegvvnidakmcdrdtsipmeptilpcq

kpsdiskvedaqnfhIYYGQTFKVIKNAIDGRSYLLIQNNSRMAARTKYCTARIKSFVIPMSNYSVDTDFFPGKLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNKSEPLQFSQYAAHFTTDSDQPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPTGNYTITYFRNIAKGEGVVNIDAKMcdrdtsipmeptilpcq

KPSDISKVEDAQNFHIYYGQTFKVIKNAIDGRSYLLIQNNSRMAARTKYCTARIKSFVIPMSNYSVDTDFFPgkllgllssmkgmTSESVASGCVLKLYQGGEIGLVNKSEPLQFSQYAAHFTTDSDQPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPTGNYTITYFRNIAKGEGVVNIDAKMCDRDTSIPMEPTILPCQ

***********QNFHIYYGQTFKVIKNAIDGRSYLLIQNNSRMAARTKYCTARIKSFVIPMSNYSVDTDFFPGKLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNKSEPLQFSQYAAHFTTDSDQPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPTGNYTITYFRNIAKGEGVVNIDAKMCD***************

***DISKVEDAQNFHIYYGQTFKVIKNAIDGRSYLLIQNNSRMAARTKYCTARIKSFVIPMSNYSVDTDFFPGKLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNKSEPLQFSQYAAHFTTDSDQPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPTGNYTITYFRNIAKGEGVVNIDAKMCDRDTSIPMEPTILPC*

********EDAQNFHIYYGQTFKVIKNAIDGRSYLLIQNNSRMAARTKYCTARIKSFVIPMSNYSVDTDFFPGKLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNKSEPLQFSQYAAHFTTDSDQPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPTGNYTITYFRNIAKGEGVVNIDAKMCDRDTSIPMEPTILPCQ

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		369
224135101		379	predicted protein [Populus trichocarpa]	0.989	0.963	0.728	1e-160
225466225		407	PREDICTED: uncharacterized protein LOC10	1.0	0.906	0.701	1e-157
357460721		404	hypothetical protein MTR_3g064600 [Medic	0.986	0.900	0.663	1e-145
356537837		409	PREDICTED: uncharacterized protein LOC10	0.989	0.892	0.649	1e-144
449469100		400	PREDICTED: uncharacterized protein LOC10	0.991	0.915	0.660	1e-143
449484475		443	PREDICTED: uncharacterized protein LOC10	0.991	0.826	0.660	1e-143
356569396		403	PREDICTED: uncharacterized protein LOC10	0.989	0.905	0.654	1e-143
21554140		389	unknown [Arabidopsis thaliana]	0.981	0.930	0.664	1e-140
18408387		408	uncharacterized protein [Arabidopsis tha	0.981	0.887	0.664	1e-140
6227015		416	F12P19.7 [Arabidopsis thaliana]	0.981	0.870	0.643	1e-139

>gi\|224135101\|ref\|XP_002327566.1\| predicted protein [Populus trichocarpa] gi\|222836120\|gb\|EEE74541.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 268/368 (72%), Positives = 309/368 (83%), Gaps = 3/368 (0%)

Query: 4   DISKVEDAQNFHIYYGQTFKVIKNAIDGRSYLLIQNNSRMAARTKYCTARIKSFVIPMSN 63
           +ISK EDA NFHIYYGQTFKVIKN +DG+SYLLIQNNSRMA RTKYCT+RI+SFVIP+SN
Sbjct: 12  NISKTEDAVNFHIYYGQTFKVIKNVVDGKSYLLIQNNSRMATRTKYCTSRIESFVIPLSN 71

Query: 64  YSVDTDFFPG---KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNKSEPLQFSQYAA 120
           YS DT  FP    +LLGLL SMKG+TS+S+AS C LKLY+ GEI ++N+SEP QFS++ A
Sbjct: 72  YSADTYSFPVSFLELLGLLGSMKGITSDSMASECALKLYETGEIEMMNRSEPQQFSEFGA 131

Query: 121 HFTTDSDQPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLT 180
           HF + +DQPQACNFANF P  ED PL+RAEWIKFLG+F N E RAN+VY+A+KENYLCLT
Sbjct: 132 HFISVTDQPQACNFANFVPLVEDYPLQRAEWIKFLGVFVNLETRANKVYDAIKENYLCLT 191

Query: 181 RVAAGKTKPFKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDD 240
           +VAA K   FKPIVAWM++ +G+WSFTKE  KLKYVEDAGGEN+D+SINK+TYN SN DD
Sbjct: 192 KVAASKNGSFKPIVAWMQYDSGIWSFTKETCKLKYVEDAGGENIDNSINKITYNTSNPDD 251

Query: 241 LEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKSCFAFLTNQSLWRFDKRNQN 300
            E+LHAILCTVDVVID TYT +PA Y QS+FL+NI   D SCFAF+ NQSLWR+DKR QN
Sbjct: 252 SEELHAILCTVDVVIDETYTPDPAGYNQSSFLQNIGVDDNSCFAFIANQSLWRYDKRVQN 311

Query: 301 SLALDWFDGAVSQPQLVLADLTEALFPTGNYTITYFRNIAKGEGVVNIDAKMCDRDTSIP 360
              LDW DGAVSQPQLVLADL E LFP GNY+ TYFRNIAKGEGVV+IDA MC+RD S P
Sbjct: 312 LTTLDWNDGAVSQPQLVLADLIEVLFPDGNYSTTYFRNIAKGEGVVSIDANMCERDISTP 371

Query: 361 MEPTILPC 368
           +EPTIL C
Sbjct: 372 LEPTILSC 379

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225466225\|ref\|XP_002267603.1\| PREDICTED: uncharacterized protein LOC100247879 [Vitis vinifera] gi\|297738139\|emb\|CBI27340.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357460721\|ref\|XP_003600642.1\| hypothetical protein MTR_3g064600 [Medicago truncatula] gi\|355489690\|gb\|AES70893.1\| hypothetical protein MTR_3g064600 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356537837\|ref\|XP_003537431.1\| PREDICTED: uncharacterized protein LOC100809133 [Glycine max]	Back alignment and taxonomy information

>gi\|449469100\|ref\|XP_004152259.1\| PREDICTED: uncharacterized protein LOC101208429 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449484475\|ref\|XP_004156893.1\| PREDICTED: uncharacterized protein LOC101227035 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356569396\|ref\|XP_003552887.1\| PREDICTED: uncharacterized protein LOC100816954 [Glycine max]	Back alignment and taxonomy information

>gi\|21554140\|gb\|AAM63220.1\| unknown [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|18408387\|ref\|NP_564864.1\| uncharacterized protein [Arabidopsis thaliana] gi\|15146232\|gb\|AAK83599.1\| At1g65900/F12P19_7 [Arabidopsis thaliana] gi\|19699144\|gb\|AAL90938.1\| At1g65900/F12P19_7 [Arabidopsis thaliana] gi\|332196317\|gb\|AEE34438.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|6227015\|gb\|AAF06051.1\|AC009513_7 F12P19.7 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		369
TAIR\|locus:2009724		408	AT1G65900 "AT1G65900" [Arabido	0.981	0.887	0.648	8.4e-129

TAIR\|locus:2009724 AT1G65900 "AT1G65900" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1264 (450.0 bits), Expect = 8.4e-129, P = 8.4e-129
 Identities = 242/373 (64%), Positives = 288/373 (77%)

Query:     5 ISKVEDAQNFHIYYGQTFKVIKNAIDGRSYLLIQNNSRMAARTKYCTARIKSFVIPMSNY 64
             ISKVEDA NFHIYYGQTFKVIKNAIDG+SYLLIQN SRMA RTKYCT+RIKS+VIP+ NY
Sbjct:    37 ISKVEDATNFHIYYGQTFKVIKNAIDGKSYLLIQNTSRMAVRTKYCTSRIKSYVIPLLNY 96

Query:    65 SVDTDF----FPXXXXXXXXXXXXX---TSESVASGCVLKLYQGGEIGLVNKSEPLQFSQ 117
             S+DT       P                TS+ V S C+LKL + GE+  ++K E  Q SQ
Sbjct:    97 SLDTQSSQGSVPVSFFELLGLLGSLKGITSDEVVSPCLLKLCEAGEVVKLDKGE--QLSQ 154

Query:   118 YAAHFTTDSDQPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYL 177
             +AAHF +D+DQPQ CNFANF P  E  PL+RAEWIKFLG F N E +ANQVY++VK +Y 
Sbjct:   155 FAAHFISDTDQPQTCNFANFFPLSEGTPLQRAEWIKFLGAFTNLETKANQVYDSVKASYT 214

Query:   178 CLTRVAAGKTKPFKPIVAWMEF-YNG-VWSFTKEAFKLKYVEDAGGENVDSSINKMTYNI 235
             CL+++AA KTK FKPIVAWM +  NG +WSFTKE+ KLK+VEDAGGEN+D SINK++YN+
Sbjct:   215 CLSQMAANKTKSFKPIVAWMGYDQNGGMWSFTKESHKLKFVEDAGGENIDKSINKVSYNV 274

Query:   236 SNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKSCFAFLTNQSLWRFD 295
             S+ DDLE LHAILCTVD VID T + +P NYTQ+TFL NI+  D SCFAFL NQS+WR+D
Sbjct:   275 SDPDDLEALHAILCTVDAVIDETLSSDPQNYTQTTFLANINVDDNSCFAFLANQSIWRYD 334

Query:   296 KRNQNSLALDWFDGAVSQPQLVLADLTEALFPTGNYTITYFRNIAKGEGVVNIDAKMCDR 355
             KR +N   LDW+DGA+SQP LVLAD+ EALFPTGNYT +YFRNIAKGEGV+NI   MCDR
Sbjct:   335 KRVRNRTTLDWYDGAISQPNLVLADIVEALFPTGNYTTSYFRNIAKGEGVINISPDMCDR 394

Query:   356 DTSIPMEPTILPC 368
             D S+P+ P+I  C
Sbjct:   395 DASLPLVPSIPAC 407


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      369       356   0.00080  117 3  11 22  0.39    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  248 KB (2133 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.18u 0.10s 26.28t   Elapsed:  00:00:02
  Total cpu time:  26.18u 0.10s 26.28t   Elapsed:  00:00:02
  Start:  Sat May 11 10:58:52 2013   End:  Sat May 11 10:58:54 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.44.353.1	hypothetical protein (379 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		369
cd01141		186	cd01141, TroA_d, Periplasmic binding protein TroA_	4e-07

>gnl\|CDD\|238561 cd01141, TroA_d, Periplasmic binding protein TroA_d	Back alignment and domain information

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 142 EDGPLRRAEWIKFLGIFAN--AEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEF 199
              PL RAEWIKF   F     E +A++ +  +   Y  L   A   +   KP VA  + 
Sbjct: 101 YPSPLGRAEWIKFAAAFYGVGKEDKADEAFAQIAGRYRDL---AKKVSNLNKPTVAIGKP 157

Query: 200 YNGVWSF-TKEAFKLKYVEDAGG 221
             G+W      ++  K + DAGG
Sbjct: 158 VKGLWYMPGGNSYVAKMLRDAGG 180

These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains. Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		369
PRK09534		359	btuF corrinoid ABC transporter substrate-binding p	99.97
cd01142		289	TroA_e Periplasmic binding protein TroA_e. These p	99.97
TIGR03659		289	IsdE heme ABC transporter, heme-binding protein is	99.96
cd01149		235	HutB Hemin binding protein HutB. These proteins ha	99.96
cd01139		342	TroA_f Periplasmic binding protein TroA_f. These p	99.96
cd01148		284	TroA_a Metal binding protein TroA_a. These protein	99.96
PRK14048		374	ferrichrome/ferrioxamine B periplasmic transporter	99.96
cd01140		270	FatB Siderophore binding protein FatB. These prote	99.96
cd01147		262	HemV-2 Metal binding protein HemV-2. These protein	99.96
COG0614		319	FepB ABC-type Fe3+-hydroxamate transport system, p	99.96
cd01144		245	BtuF Cobalamin binding protein BtuF. These protein	99.95
cd01146		256	FhuD Fe3+-siderophore binding domain FhuD. These p	99.95
PRK11411		303	fecB iron-dicitrate transporter substrate-binding	99.94
TIGR03868		287	F420-O_ABCperi proposed F420-0 ABC transporter, pe	99.94
PF01497		238	Peripla_BP_2: Periplasmic binding protein; InterPr	99.93
COG4558		300	ChuT ABC-type hemin transport system, periplasmic	99.92
cd01143		195	YvrC Periplasmic binding protein YvrC. These prote	99.92
PRK03379		260	vitamin B12-transporter protein BtuF; Provisional	99.91
cd01138		248	FeuA Periplasmic binding protein FeuA. These prote	99.91
PRK10576		292	iron-hydroxamate transporter substrate-binding sub	99.91
PRK10957		317	iron-enterobactin transporter periplasmic binding	99.91
COG4607		320	CeuA ABC-type enterochelin transport system, perip	99.87
COG4594		310	FecB ABC-type Fe3+-citrate transport system, perip	99.83
cd01141		186	TroA_d Periplasmic binding protein TroA_d. These p	99.83
cd00636		148	TroA-like Helical backbone metal receptor (TroA-li	99.12
COG4592		319	FepB ABC-type Fe2+-enterobactin transport system,	99.08
cd01967		406	Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha	94.06
cd01972		426	Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE	81.12
TIGR01282		466	nifD nitrogenase molybdenum-iron protein alpha cha	81.02

>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed	Back alignment and domain information

Probab=99.97  E-value=4.9e-30  Score=249.00  Aligned_cols=241  Identities=12%  Similarity=0.001  Sum_probs=177.3

Q ss_pred             eeEEEecCceEEEec-CCccc-cccCCCCcEEEecCCCcCcHHHHhhhcCCcccccC--CCchhhhccCceEE--ecCC-
Q 044166           54 IKSFVIPMSNYSVDT-DFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVN--KSEPLQFSQYAAHF--TTDS-  126 (369)
Q Consensus        54 ~~~i~~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G--~~n~E~i~~l~P~~--~~~~-  126 (369)
                      ..+|+.|++|||+.. ...++ .+||+.|+|||++....+.|.+.+.   ..+...+  ..|+|+|++++|++  .... 
T Consensus        53 ~Vti~~~p~RIVsL~~~~~e~l~aLG~~d~iVGv~~~~~~~~~~~~~---~~v~~g~~~~~n~E~Il~l~PDLVi~~~~~  129 (359)
T PRK09534         53 EITLDERPERVVTLNPSAAQTMWELGARDRVVGVTQYASYLDGAEER---TNVSGGQPFGVNVEAVVGLDPDLVLAPNAV  129 (359)
T ss_pred             EEEecCCCCeEEecCccHHHHHHHcCCCCeEEEecccccCChhhhhC---CcccCCCCCCCCHHHHhcCCCCEEEEcCCC
Confidence            357788999999954 45677 9999999999998411122433221   1122111  22999999999955  2221 


Q ss_pred             C-------CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEee
Q 044166          127 D-------QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEF  199 (369)
Q Consensus       127 ~-------~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~  199 (369)
                      .       ++.||||+.+..  ..+..+..++++.+|++||+|++|++++++++++++.+++++++.+  +||+|++...
T Consensus       130 ~~~~~~~L~~~gi~V~~~~~--~~~l~~i~~~i~~lG~i~G~e~~A~~li~~~~~~i~~i~~~~~~~~--~~p~Vl~~~~  205 (359)
T PRK09534        130 AGDTVTRLREAGITVFHFPA--ATSIEDVAEKTATIGRLTGNCEAAAETNAEMRDRVDAVEDRTADVD--DRPRVLYPLG  205 (359)
T ss_pred             chHHHHHHHHCCCeEEEeCC--CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhccC--CCCeEEEEec
Confidence            1       578999987742  1234456789999999999999999999999999999999998875  4899998542


Q ss_pred             eCCEEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccC
Q 044166          200 YNGVWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAA  278 (369)
Q Consensus       200 ~~~~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~  278 (369)
                        + .++.| ++|.++|++.+|++|++.+.   ...++..+|+|+|+++  |||+||+...    .    +   +..+++
T Consensus       206 --~-~~~~g~~s~~~~li~~aG~~Ni~~~~---~~~~~~~vs~E~ll~~--nPDvIiv~~~----~----~---~~~~~p  266 (359)
T PRK09534        206 --D-GYTAGGNTFIGALIEAAGGHNVAADA---TTDGYPQLSEEVIVQQ--DPDVIVVATA----S----A---LVAETE  266 (359)
T ss_pred             --C-ceecCCCccHHHHHHHhCCEehhhhc---CcCCCCCCCHHHHHHh--CCCEEEEcCc----c----h---hhhccc
Confidence              2 24556 99999999999999999742   2235779999999999  9999997421    1    1   223469


Q ss_pred             CCccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhCCC
Q 044166          279 DKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPT  328 (369)
Q Consensus       279 ~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lhPe  328 (369)
                      .|++++||||||||.++..       .|...++. ....+++|+++|||+
T Consensus       267 ~~~~l~AVKngrV~~v~~~-------~~~~p~pr-~~~~~e~LA~~l~~~  308 (359)
T PRK09534        267 PYASTTAGETGNVVTVNVN-------HINQPAPR-IVESMATMATAFHNT  308 (359)
T ss_pred             ccccCchhhcCCEEEeCcc-------cccCCCCc-HHHHHHHHHHHhhhh
Confidence            9999999999999999642       23334443 445589999999997

>cd01142 TroA_e Periplasmic binding protein TroA_e	Back alignment and domain information

>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE	Back alignment and domain information

>cd01149 HutB Hemin binding protein HutB	Back alignment and domain information

>cd01139 TroA_f Periplasmic binding protein TroA_f	Back alignment and domain information

>cd01148 TroA_a Metal binding protein TroA_a	Back alignment and domain information

>PRK14048 ferrichrome/ferrioxamine B periplasmic transporter; Provisional	Back alignment and domain information

>cd01140 FatB Siderophore binding protein FatB	Back alignment and domain information

>cd01147 HemV-2 Metal binding protein HemV-2	Back alignment and domain information

>COG0614 FepB ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd01144 BtuF Cobalamin binding protein BtuF	Back alignment and domain information

>cd01146 FhuD Fe3+-siderophore binding domain FhuD	Back alignment and domain information

>PRK11411 fecB iron-dicitrate transporter substrate-binding subunit; Provisional	Back alignment and domain information

>TIGR03868 F420-O_ABCperi proposed F420-0 ABC transporter, periplasmic F420-0 binding protein	Back alignment and domain information

>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems	Back alignment and domain information

>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd01143 YvrC Periplasmic binding protein YvrC	Back alignment and domain information

>PRK03379 vitamin B12-transporter protein BtuF; Provisional	Back alignment and domain information

>cd01138 FeuA Periplasmic binding protein FeuA	Back alignment and domain information

>PRK10576 iron-hydroxamate transporter substrate-binding subunit; Provisional	Back alignment and domain information

>PRK10957 iron-enterobactin transporter periplasmic binding protein; Provisional	Back alignment and domain information

>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd01141 TroA_d Periplasmic binding protein TroA_d	Back alignment and domain information

>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain)	Back alignment and domain information

>COG4592 FepB ABC-type Fe2+-enterobactin transport system, periplasmic component [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like	Back alignment and domain information

>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like	Back alignment and domain information

>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		369
3psh_A		326	Protein HI_1472; substrate binding protein, peripl	7e-04

>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A Length = 326	Back alignment and structure

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 20/161 (12%), Positives = 44/161 (27%), Gaps = 17/161 (10%)

Query: 122 FTTDSDQPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTR 181
             T     +           +       + I+ +      + + +++  A   N   L  
Sbjct: 114 LRTGEVGEKGKLNPTLTDEDKAYNDGLKQGIELIAEVFEKKQQGDELVKAAFANRKLLAD 173

Query: 182 VAAGKTKPFKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDL 241
                +   +    +M     + ++    +    +E AG  NV ++  K    +S    L
Sbjct: 174 RLGDVSADKRVRT-YMAN-PDLGTYGSGKYTGLMMEHAGAYNVAAATIKGFKQVS----L 227

Query: 242 EQLHA-----ILCTVDVVIDGTYTLEPANYTQSTFLENIDA 277
           E +       I      ++   Y              NI A
Sbjct: 228 ENVLEWNPAVI------LVQDRYPDVVPQILNDQGWANIQA 262

PyMOL of 3psh

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		369
3psh_A		326	Protein HI_1472; substrate binding protein, peripl	100.0
4hn9_A		335	Iron complex transport system substrate-binding P;	100.0
2r7a_A		256	Bacterial heme binding protein; periplasmic bindin	100.0
2r79_A		283	Periplasmic binding protein; heme transport, trans	100.0
2etv_A		346	Iron(III) ABC transporter, periplasmic iron-bindi	100.0
2q8p_A		260	Iron-regulated surface determinant E; helical back	99.97
3md9_A		255	Hemin-binding periplasmic protein HMUT; transport	99.97
3lhs_A		296	Ferrichrome ABC transporter lipoprotein; sideropho	99.97
3gfv_A		303	Uncharacterized ABC transporter solute-binding pro	99.97
2chu_A		296	CEUE, enterochelin uptake periplasmic binding prot	99.97
3r5t_A		305	Ferric vibriobactin ABC transporter, periplasmic v	99.96
3be6_A		297	Putative iron compound-binding protein of ABC TRA	99.96
1efd_N		266	Ferrichrome-binding periplasmic protein; periplasm	99.96
2x4l_A		325	Ferric-siderophore receptor protein; transport; 1.	99.96
3tny_A		303	YFIY (ABC transport system substrate-binding PROT;	99.96
3g9q_A		279	Ferrichrome-binding protein; alpha-beta protein, s	99.96
3tlk_A		326	Ferrienterobactin-binding periplasmic protein; fer	99.96
3tef_A		292	VCTP, iron(III) ABC transporter, periplasmic iron-	99.95
1n2z_A		245	Vitamin B12 transport protein BTUF; HET: CNC PG4;	99.95
4b8y_A		277	FHUD2; transport protein-siderophore complex, tran	99.95
3mwf_A		298	Iron-regulated ABC transporter siderophore-bindin	99.94
2wi8_A		311	Iron-uptake system-binding protein; bacillibactin	99.94
4h59_A		308	PIAA, iron-compound ABC transporter, iron compound	99.9

>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A	Back alignment and structure

Probab=100.00  E-value=5.5e-35  Score=279.03  Aligned_cols=262  Identities=11%  Similarity=0.053  Sum_probs=189.0

Q ss_pred             eEEEecCceEEEec-CCccc-cccCCCCcEEEecCCCcC--cHHHHhh-hcCCcccccCCC---chhhhccCceEE--ec
Q 044166           55 KSFVIPMSNYSVDT-DFFPG-KLLGLLSSMKGMTSESVA--SGCVLKL-YQGGEIGLVNKS---EPLQFSQYAAHF--TT  124 (369)
Q Consensus        55 ~~i~~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~~~--~p~~~~~-~~~g~i~~~G~~---n~E~i~~l~P~~--~~  124 (369)
                      .+|+.|++|||+.+ +.+++ .+||+.|+|||++.....  .+.+... ....+++.+|..   |+|+|++++|+|  .+
T Consensus        12 v~i~~~p~RIv~l~~~~~e~l~aLg~~d~iVg~~~~~~~~~~~~~~~~~~~~~~ip~vG~~~~~n~E~i~~l~PDlIi~~   91 (326)
T 3psh_A           12 VTIPDHINRAVVLQHQTLNIAVQLDATKQIVGVLSNWKKQLGKNYVRLAPELENMAMPGDLNSVNIESLLALKPDVVFVT   91 (326)
T ss_dssp             EEECSSCSCEEEECHHHHHHHHHTTCGGGEEEECTTHHHHHCTTGGGTCGGGGGCBCCBCSSCBCHHHHHHTCCSEEEEE
T ss_pred             EEcCCCCCEEEEcCccHHHHHHhcCCCCcEEEeccccccccchhHHHhChhhhcCCcCCCCCCCCHHHHHccCCCEEEEe
Confidence            56778899999954 45677 999999999999741100  0001000 011346667753   999999999954  23


Q ss_pred             CC-C-------CCCCceEEEcCCCCCC-------c----------hhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Q 044166          125 DS-D-------QPQACNFANFAPFGED-------G----------PLRRAEWIKFLGIFANAEARANQVYNAVKENYLCL  179 (369)
Q Consensus       125 ~~-~-------~~~gIpvv~~~~~~e~-------~----------pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i  179 (369)
                      .. .       ++.||||+.+......       .          ..+..++|+.+|++||+|++|++++++++++++++
T Consensus        92 ~~~~~~~~~~L~~~Gipvv~~~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~~i~~lg~~lg~e~~A~~li~~~~~~~~~v  171 (326)
T 3psh_A           92 NYAPSEMIKQISDVNIPVVAISLRTGEVGEKGKLNPTLTDEDKAYNDGLKQGIELIAEVFEKKQQGDELVKAAFANRKLL  171 (326)
T ss_dssp             TTCCHHHHHHHHTTTCCEEEECSCCSCGGGTTCSSCCCTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTHHHH
T ss_pred             CCCChHHHHHHHHcCCCEEEEeccccccccccccccccccccchhhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            22 1       5789999987533210       0          14567899999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCEEEEEeeeCCEEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecC
Q 044166          180 TRVAAGKTKPFKPIVAWMEFYNGVWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGT  258 (369)
Q Consensus       180 ~~~~~~~~~~~kp~V~~~~~~~~~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~  258 (369)
                      ++++++++..+||+|++..   +.+++.| +++.++++++|||+|++.+.    ..++..+|+|+|+++  |||+||+..
T Consensus       172 ~~~~~~~~~~~~~~v~~~~---~~~~~~g~~s~~~~~i~~aG~~n~~~~~----~~~~~~vs~E~l~~~--~PDvIi~~~  242 (326)
T 3psh_A          172 ADRLGDVSADKRVRTYMAN---PDLGTYGSGKYTGLMMEHAGAYNVAAAT----IKGFKQVSLENVLEW--NPAVILVQD  242 (326)
T ss_dssp             HHHHTTCCTTTSEEEEECB---TTTEEECBSSHHHHHHHHTTEEETTTTT----CBSEEECCHHHHHHH--CCSEEEECT
T ss_pred             HHHHccCCcccCcEEEEEc---CcceeecCCccHHHHHHHcCCEeccccc----cCCCceeCHHHHHhh--CCCEEEEeC
Confidence            9999987655689998742   3356666 89999999999999998732    235789999999999  999999853


Q ss_pred             CCCCCCCCChhhHHhhcccCCCccccceeeCcEEEeccCCCCCcCcccccccCCCHH---HHHHHHHHHhCCC--Ccc--
Q 044166          259 YTLEPANYTQSTFLENIDAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQ---LVLADLTEALFPT--GNY--  331 (369)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~---~vL~dla~~lhPe--~~~--  331 (369)
                      .  ..     ....+..++|.|++++||||||||.++.     +... |..  ..|.   ..+++||++||||  .+.  
T Consensus       243 ~--~~-----~~~~~l~~~p~~~~l~AVk~grV~~~~~-----~~~~-~~~--~~p~~~~~~~~~lA~~l~Pe~f~d~d~  307 (326)
T 3psh_A          243 R--YP-----DVVPQILNDQGWANIQALKDKKVFLMPE-----YAKA-WGY--PMPEALALGEVWLAKALYPQRFQDVDL  307 (326)
T ss_dssp             T--CT-----THHHHHHTCGGGTTSHHHHTTCEEECCT-----TCCC-CSS--CCHHHHHTHHHHHHHHHCGGGCTTCCH
T ss_pred             C--Cc-----hhHHHHhcCCCcccCChhhCCcEEEcCC-----CCcc-cCC--CChhHHHHHHHHHHHhhChhhccCCCh
Confidence            1  11     1233334579999999999999999953     2222 332  2343   3478999999999  332  


Q ss_pred             ---ccccccccc
Q 044166          332 ---TITYFRNIA  340 (369)
Q Consensus       332 ---~~~yy~~l~  340 (369)
                         ...||+++.
T Consensus       308 ~~~~~~~y~~f~  319 (326)
T 3psh_A          308 DKMVNDYYQKFY  319 (326)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence               358888876

PyMOL of 3psh

>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}	Back alignment and structure

>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A	Back alignment and structure

>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}	Back alignment and structure

>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4	Back alignment and structure

>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*	Back alignment and structure

>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*	Back alignment and structure

>3lhs_A Ferrichrome ABC transporter lipoprotein; siderophore, iron, receptor, binding protein, T protein; HET: SF8; 1.30A {Staphylococcus aureus subsp} PDB: 3eiw_A 3eix_A* 3li2_A*	Back alignment and structure

>3gfv_A Uncharacterized ABC transporter solute-binding protein YCLQ; alpha-beta-sandwich, periplasmic binding protein fold (PBP fold); 1.75A {Bacillus subtilis subsp}	Back alignment and structure

>2chu_A CEUE, enterochelin uptake periplasmic binding protein; iron, mecam, SELF assembly, siderophore; HET: ECA; 2.40A {Campylobacter jejuni} SCOP: c.92.2.4	Back alignment and structure

>3r5t_A Ferric vibriobactin ABC transporter, periplasmic vibriobactin-binding protein; iron-vibriobactin transport protein; HET: VBN; 1.45A {Vibrio cholerae} PDB: 3r5s_A*	Back alignment and structure

>3be6_A Putative iron compound-binding protein of ABC TRA family; open form, closed form, group III periplasmic binding protei structural genomics; HET: MSE; 1.82A {Escherichia coli O157} PDB: 3be5_A*	Back alignment and structure

>1efd_N Ferrichrome-binding periplasmic protein; periplasmic binding protein-siderophore complex, FHUD complex with gallichrome; HET: GCR; 1.90A {Escherichia coli} SCOP: c.92.2.1 PDB: 1k7s_N* 1k2v_N* 1esz_A*	Back alignment and structure

>2x4l_A Ferric-siderophore receptor protein; transport; 1.50A {Streptomyces coelicolor}	Back alignment and structure

>3tny_A YFIY (ABC transport system substrate-binding PROT; schizokinen, nutrient binding protein, ABC transporter, metal transport; HET: SKZ; 1.55A {Bacillus cereus}	Back alignment and structure

>3g9q_A Ferrichrome-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.60A {Bacillus subtilis subsp} PDB: 3hxp_A	Back alignment and structure

>3tlk_A Ferrienterobactin-binding periplasmic protein; ferric-enterobactin, trimer, siderophore transport, periplas space, metal transport; HET: EB4; 1.85A {Escherichia coli}	Back alignment and structure

>3tef_A VCTP, iron(III) ABC transporter, periplasmic iron-compo binding protein; siderophore-binding protein, transport protein; 1.70A {Vibrio cholerae}	Back alignment and structure

>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A	Back alignment and structure

>4b8y_A FHUD2; transport protein-siderophore complex, transport protein, VA siderophore, class III solute binding, inhibitor protein (S; HET: AHO; 1.90A {Staphylococcus aureus subsp}	Back alignment and structure

>3mwf_A Iron-regulated ABC transporter siderophore-bindin SIRA; ABC transporter binding protein, transport protein; HET: SE8; 1.70A {Staphylococcus aureus subsp} PDB: 3mwg_A	Back alignment and structure

>2wi8_A Iron-uptake system-binding protein; bacillibactin and enterobactin binding, triscatecholate BIND protein, iron transport; 1.55A {Bacillus subtilis} PDB: 2why_A 2xuz_A* 2xv1_A* 2phz_A	Back alignment and structure

>4h59_A PIAA, iron-compound ABC transporter, iron compound-BIND protein; center for structural genomics of infectious diseases; HET: MSE B3P; 1.66A {Streptococcus pneumoniae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		369
d2etva1		334	Putative iron(III) transporter TM0189 {Thermotoga	100.0
d2chua1		287	Enterochelin uptake protein CeuE {Campylobacter je	99.95
d1esza_		260	Periplasmic ferric siderophore binding protein Fhu	99.93
d2phza1		277	Iron-uptake system-binding protein FeuA {Bacillus	99.93
d1n2za_		245	Vitamin B12 binding protein BtuF {Escherichia coli	99.89
d7reqa2		168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	81.28

>d2etva1 c.92.2.4 (A:25-358) Putative iron(III) transporter TM0189 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: "Helical backbone" metal receptor
family: TM0189-like
domain: Putative iron(III) transporter TM0189
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.3e-35  Score=279.46  Aligned_cols=264  Identities=10%  Similarity=0.036  Sum_probs=185.1

Q ss_pred             eEEEecCceEEEec-CCccc-cccCCCCcEEEecC----CCcCcHHHHhhhcCCccccc---CC---CchhhhccCceEE
Q 044166           55 KSFVIPMSNYSVDT-DFFPG-KLLGLLSSMKGMTS----ESVASGCVLKLYQGGEIGLV---NK---SEPLQFSQYAAHF  122 (369)
Q Consensus        55 ~~i~~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~----~~~~~p~~~~~~~~g~i~~~---G~---~n~E~i~~l~P~~  122 (369)
                      .+|+.|++|||+.+ ...++ .+||+.|+|||++.    .....+......+..+++.+   |.   .|+|+|++++|+|
T Consensus         8 Vti~~~p~RIv~l~~~~~e~l~aLg~~d~iVGv~~~~~~~~~~~~~~~~~p~~~~~~~vg~~~~~~~~n~E~i~~l~PDL   87 (334)
T d2etva1           8 VEIPSNVNRIVAVGPGALRLIAYLKATDMVVGVEDFEKLRPYGRPYILAYPELKKLPSVGPGGPGKLPDLESLITLQPDV   87 (334)
T ss_dssp             EEEESCCCCEEEESTTHHHHHHHTTCGGGBCCBCTHHHHSCSSCHHHHHCGGGGGSCBSCCCSTTCCCCHHHHHHHCCSE
T ss_pred             EEcCCCCCEEEEeCchHHHHHHHcCCCCcEEEeccccccCcchhhhhhhChHHhcCCeeeccCCCCcccHHHHHhcCCCE
Confidence            46888899999954 45677 99999999999973    22222222211111233333   32   2999999999954


Q ss_pred             --ecCCC--------CCCCceEEEcC--CCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 044166          123 --TTDSD--------QPQACNFANFA--PFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPF  190 (369)
Q Consensus       123 --~~~~~--------~~~gIpvv~~~--~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~  190 (369)
                        .+...        +++||||+++.  +.......++.+||+++|++||+|++|++++++++++++.+++++++.   +
T Consensus        88 Vi~~~~~~~~~~~~l~~~gipv~~~~~~~~~~~~~~~~~~~i~~lg~~~g~e~~A~~~~~~~~~~~~~v~~~~~~~---~  164 (334)
T d2etva1          88 VFITYVDRKTAKDIQEKTGIPVVVLSYGNLGTFEDEDLFRSIELAGKILGREERAHEVVDFIRKAQEDLVTRSEGV---E  164 (334)
T ss_dssp             EEEESCCHHHHHHHHHHHTSCEEEECCCCTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTS---C
T ss_pred             EEEeCCCchhHHHHHHhcCCCEEEecccccccCCHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHhhccc---C
Confidence              33322        46899999864  222223346788999999999999999999999999999999999876   4


Q ss_pred             CCEEEEEeee-CCEEEEeCCChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChh
Q 044166          191 KPIVAWMEFY-NGVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQS  269 (369)
Q Consensus       191 kp~V~~~~~~-~~~~~~~g~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~  269 (369)
                      ||+|++.... .+.+...+.+....++..|||.|++.+.    +.++..+|+|+|+++  |||+||+....     . ..
T Consensus       165 ~p~v~~~~~~~~~~~~~~~~~~~~~~~~~aG~~nv~~~~----~~~~~~vs~E~l~~~--nPDvI~v~~~~-----~-~~  232 (334)
T d2etva1         165 SPTVYVGGIGYKGAHGIDSTEAKYPPFVVLHARNVVDEL----GEGHKFIDPEKLLVW--NPEYIFIDENG-----L-SL  232 (334)
T ss_dssp             CCEEEEECCCSSSCCCTTEEEESCHHHHHTTCEETTGGG----CSEEEECCTHHHHHH--CCSEEEEEGGG-----H-HH
T ss_pred             CcEEEEEecccccceeeccCCcccHHHHHhccccccccc----cCCCCccCHHHHhhh--CCCEEEEeCCC-----c-hh
Confidence            8999876433 2333333345555677899999999843    246789999999999  99999874311     0 11


Q ss_pred             hHHhhc-ccCCCccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhCCC--Cc-----cccccccccc
Q 044166          270 TFLENI-DAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPT--GN-----YTITYFRNIA  340 (369)
Q Consensus       270 ~~~~~~-~~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lhPe--~~-----~~~~yy~~l~  340 (369)
                      ...+.+ .+|.|++++||||||||.+..       ..||..++.+....+.+||++||||  .|     ....||++++
T Consensus       233 ~~~~~~~~~p~w~~l~AVkngrVy~v~~-------~~~~~~~~~~~~~~~~~lAk~lyPe~F~did~~~~~~~fy~~~y  304 (334)
T d2etva1         233 VLDDYSKHREFYESLSAVKRGKVYGILP-------YNYYTTNIGTALADAYFIGKVLYPERFTDIDPEEKADEIYEFLL  304 (334)
T ss_dssp             HHHHHHHCHHHHHTSHHHHTTCEEEECC-------CCTTSCCHHHHHHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHHH
T ss_pred             hHHHHHhcCccccCCChhhcCcEEEECc-------hhhccCChhHHHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHc
Confidence            122222 369999999999999998842       3466665544434467899999999  32     2467888877

PyMOL of d2etva1

>d2chua1 c.92.2.4 (A:24-310) Enterochelin uptake protein CeuE {Campylobacter jejuni [TaxId: 197]}	Back information, alignment and structure

>d1esza_ c.92.2.1 (A:) Periplasmic ferric siderophore binding protein FhuD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2phza1 c.92.2.4 (A:20-296) Iron-uptake system-binding protein FeuA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1n2za_ c.92.2.2 (A:) Vitamin B12 binding protein BtuF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}	Back information, alignment and structure