Citrus Sinensis ID: 044248

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
MATSLSCSADQLASFFGPNATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDDDVQSNGIQLRKIEPTATTPSSV
ccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccEEEccccccccccccccccccccEEccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccccccccccccccccccccccccccccccccc
ccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHcHHccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccHHccccEEcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcHcHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccHHHccccHEHHcccccccccccccccccccccccccc
matslscsadqlasffgpnatdatsAASLICSQLEAINNKfsdtayavdSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFafafgtpsngfigrhnfalksfptsnfdysYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFwsvdgwasasntgdllfgsgvidfagsGVVHMVGGIAGLwgayiegprigrfdrsgqsvlrgHSASLVVLGTFMLWFgwygfnpgsFTKILSAYntgshygqwsaiGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLaekakyddpleaaqlhggcgaWGVIFTALLLRrnspyglfmgggGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKllrispedemagmdltrhggfayvyhddddvqsngiqlrkieptattpssv
MATSLSCSADQLASFFGPNATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDDDVQSngiqlrkieptattpssv
MATSLSCSADQLASFFGPNATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDaaagglfyylfgfafafgTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWafaiaaagitsgsiaERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRtavtttlagctaalttlFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDDDVQSNGIQLRKIEPTATTPSSV
**************FFG****DATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDD**********************
******CSADQLASFFGPNATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVY**************************
********ADQLASFFGPNATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDDDVQSNGIQLRKIEP********
****LSCSADQLASFFGPNATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDD***********************
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MATSLSCSADQLASFFGPNATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDDDVQSNGIQLRKIEPTATTPSSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query489 2.2.26 [Sep-21-2011]
P54144501 Ammonium transporter 1 me yes no 0.979 0.956 0.786 0.0
P58905488 Ammonium transporter 1 me N/A no 0.971 0.973 0.783 0.0
Q9SQH9498 Ammonium transporter 1 me no no 0.991 0.973 0.752 0.0
O04161514 Ammonium transporter 1 me N/A no 0.989 0.941 0.752 0.0
Q9LK16496 Putative ammonium transpo no no 0.989 0.975 0.758 0.0
Q9ZPJ8514 Ammonium transporter 1 me no no 0.940 0.894 0.759 0.0
Q7XQ12498 Ammonium transporter 1 me yes no 0.950 0.933 0.743 0.0
Q6K9G1496 Ammonium transporter 1 me no no 0.957 0.943 0.735 0.0
Q9SVT8504 Ammonium transporter 1 me no no 0.975 0.946 0.735 0.0
Q6K9G3498 Ammonium transporter 1 me no no 0.973 0.955 0.688 0.0
>sp|P54144|AMT11_ARATH Ammonium transporter 1 member 1 OS=Arabidopsis thaliana GN=AMT1-1 PE=1 SV=1 Back     alignment and function desciption
 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/496 (78%), Positives = 429/496 (86%), Gaps = 17/496 (3%)

Query: 5   LSCSADQLASFFGPNATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQ 64
           +SCSA  LA   GPNAT   +AA+ IC QL  +NNKF DTA+A+D+TYLLFSAYLVFSMQ
Sbjct: 1   MSCSATDLAVLLGPNAT---AAANYICGQLGDVNNKFIDTAFAIDNTYLLFSAYLVFSMQ 57

Query: 65  LGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNFALKS 124
           LGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFG+AFAFG+PSNGFIG+H F LK 
Sbjct: 58  LGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGSPSNGFIGKHYFGLKD 117

Query: 125 FPTSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSV 184
            PT++ DYS FLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSV
Sbjct: 118 IPTASADYSNFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSV 177

Query: 185 DGWASASNT-GDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSV-LR 242
           DGWAS   T GDLLF +G IDFAGSGVVHMVGGIAGLWGA IEGPR+GRFD  G+++ LR
Sbjct: 178 DGWASPFRTDGDLLFSTGAIDFAGSGVVHMVGGIAGLWGALIEGPRLGRFDNGGRAIALR 237

Query: 243 GHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRTAVTTTLAGCTAA 302
           GHSASLVVLGTF+LWFGWYGFNPGSF KIL  Y TG++ GQWSA+GRTAVTTTLAGCTAA
Sbjct: 238 GHSASLVVLGTFLLWFGWYGFNPGSFNKILVTYETGTYNGQWSAVGRTAVTTTLAGCTAA 297

Query: 303 LTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLA 362
           LTTLFGKR+LSGHWNVTDVCNGLLGGFAAIT GCSVVEPWAAI+CGFVAA+VL+ CNKLA
Sbjct: 298 LTTLFGKRLLSGHWNVTDVCNGLLGGFAAITGGCSVVEPWAAIICGFVAALVLLGCNKLA 357

Query: 363 EKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRN-----------SPYGLFMGGGGKLLAA 411
           EK KYDDPLEAAQLHGGCGAWG+IFTAL  +              P+GLFMGGGGKLL A
Sbjct: 358 EKLKYDDPLEAAQLHGGCGAWGLIFTALFAQEKYLNQIYGNKPGRPHGLFMGGGGKLLGA 417

Query: 412 HVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDDDVQS 471
            +IQI+V+ GWVSATMG LFFIL K+KLLRIS EDEMAGMD+TRHGGFAY+Y DDD+   
Sbjct: 418 QLIQIIVITGWVSATMGTLFFILKKMKLLRISSEDEMAGMDMTRHGGFAYMYFDDDE-SH 476

Query: 472 NGIQLRKIEPTATTPS 487
             IQLR++EP + +PS
Sbjct: 477 KAIQLRRVEPRSPSPS 492
High affinity ammonium transporter probably involved in ammonium uptake from the soil, long-distance transport to the shoots and re-uptake of apoplastic ammonium that derives from photorespiration in shoots. Contributes with AMT1-3 to the overall ammonium uptake capacity in roots under nitrogen-deficiency conditions.
Arabidopsis thaliana (taxid: 3702)
>sp|P58905|AMT11_SOLLC Ammonium transporter 1 member 1 OS=Solanum lycopersicum GN=AMT1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SQH9|AMT13_ARATH Ammonium transporter 1 member 3 OS=Arabidopsis thaliana GN=AMT1-3 PE=1 SV=2 Back     alignment and function description
>sp|O04161|AMT12_SOLLC Ammonium transporter 1 member 2 OS=Solanum lycopersicum GN=AMT1-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LK16|AMT15_ARATH Putative ammonium transporter 1 member 5 OS=Arabidopsis thaliana GN=AMT1-5 PE=3 SV=1 Back     alignment and function description
>sp|Q9ZPJ8|AMT12_ARATH Ammonium transporter 1 member 2 OS=Arabidopsis thaliana GN=AMT1-2 PE=1 SV=1 Back     alignment and function description
>sp|Q7XQ12|AMT11_ORYSJ Ammonium transporter 1 member 1 OS=Oryza sativa subsp. japonica GN=AMT1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q6K9G1|AMT12_ORYSJ Ammonium transporter 1 member 2 OS=Oryza sativa subsp. japonica GN=AMT1-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SVT8|AMT14_ARATH Ammonium transporter 1 member 4 OS=Arabidopsis thaliana GN=AMT1-4 PE=1 SV=1 Back     alignment and function description
>sp|Q6K9G3|AMT13_ORYSJ Ammonium transporter 1 member 3 OS=Oryza sativa subsp. japonica GN=AMT1-3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query489
397788014500 AMT1;1 [Citrus trifoliata] 1.0 0.978 0.948 0.0
121485994502 ammonium transporter [Citrus sinensis x 0.997 0.972 0.941 0.0
10637893502 ammonium transporter (AMT1.1) [Lotus jap 0.995 0.970 0.828 0.0
10952510501 putative ammonium transporter AMT1;1 [Lo 0.985 0.962 0.832 0.0
255554324502 ammonium transporter, putative [Ricinus 0.995 0.970 0.815 0.0
224107549498 ammonium transporter [Populus trichocarp 0.987 0.969 0.814 0.0
357439799503 Ammonium transporter 1 member [Medicago 0.979 0.952 0.829 0.0
147805516502 hypothetical protein VITISV_044207 [Viti 0.979 0.954 0.814 0.0
225433318502 PREDICTED: ammonium transporter 1 member 0.979 0.954 0.814 0.0
384237239505 ammonium transporter AMT1;1 [Pyrus calle 0.991 0.960 0.812 0.0
>gi|397788014|gb|AFO66660.1| AMT1;1 [Citrus trifoliata] Back     alignment and taxonomy information
 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/500 (94%), Positives = 480/500 (96%), Gaps = 11/500 (2%)

Query: 1   MATSLSCSADQLASFFGPNATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLV 60
           MATSLSCSAD LA F GPNAT+A+SAASLICSQLEAINNKF+DTAYAVDSTYLLFSAYLV
Sbjct: 1   MATSLSCSADLLAGFLGPNATNASSAASLICSQLEAINNKFTDTAYAVDSTYLLFSAYLV 60

Query: 61  FSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNF 120
           FSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNF
Sbjct: 61  FSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNF 120

Query: 121 ALKSFPTSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHW 180
           ALKSFPTSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHW
Sbjct: 121 ALKSFPTSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHW 180

Query: 181 FWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSV 240
           FWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSV
Sbjct: 181 FWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSV 240

Query: 241 LRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRTAVTTTLAGCT 300
           LRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGS+YGQWSAIGRTAVTTTLAGCT
Sbjct: 241 LRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSYYGQWSAIGRTAVTTTLAGCT 300

Query: 301 AALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNK 360
           AALTTLFGKRILSG WNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNK
Sbjct: 301 AALTTLFGKRILSGRWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNK 360

Query: 361 LAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRN-----------SPYGLFMGGGGKLL 409
           LAEKAKYDDPLEAAQLHGGCGAWGVIFTAL  +              PYGLFMGGGGKLL
Sbjct: 361 LAEKAKYDDPLEAAQLHGGCGAWGVIFTALFAKEKFVNEVYPGKPGRPYGLFMGGGGKLL 420

Query: 410 AAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDDDV 469
           AAHVIQILVVAGWVSATMGPLFF+LHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDDDV
Sbjct: 421 AAHVIQILVVAGWVSATMGPLFFVLHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDDDV 480

Query: 470 QSNGIQLRKIEPTATTPSSV 489
           QSNGIQLRKIEPTATTPSSV
Sbjct: 481 QSNGIQLRKIEPTATTPSSV 500

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|121485994|gb|ABI52423.2| ammonium transporter [Citrus sinensis x Citrus trifoliata] Back     alignment and taxonomy information
>gi|10637893|emb|CAC10555.1| ammonium transporter (AMT1.1) [Lotus japonicus] Back     alignment and taxonomy information
>gi|10952510|gb|AAG24944.1| putative ammonium transporter AMT1;1 [Lotus japonicus] Back     alignment and taxonomy information
>gi|255554324|ref|XP_002518202.1| ammonium transporter, putative [Ricinus communis] gi|223542798|gb|EEF44335.1| ammonium transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224107549|ref|XP_002314518.1| ammonium transporter [Populus trichocarpa] gi|222863558|gb|EEF00689.1| ammonium transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357439799|ref|XP_003590177.1| Ammonium transporter 1 member [Medicago truncatula] gi|355479225|gb|AES60428.1| Ammonium transporter 1 member [Medicago truncatula] Back     alignment and taxonomy information
>gi|147805516|emb|CAN76352.1| hypothetical protein VITISV_044207 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225433318|ref|XP_002285558.1| PREDICTED: ammonium transporter 1 member 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|384237239|gb|AFH74974.1| ammonium transporter AMT1;1 [Pyrus calleryana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query489
TAIR|locus:2140877501 AMT1;1 "ammonium transporter 1 0.979 0.956 0.687 5.2e-184
UNIPROTKB|P58905488 AMT1-1 "Ammonium transporter 1 0.971 0.973 0.684 3.4e-180
TAIR|locus:2087173498 AMT1;3 "ammonium transporter 1 0.991 0.973 0.659 9.3e-178
TAIR|locus:2087168496 AMT1;5 "ammonium transporter 1 0.989 0.975 0.662 2.5e-177
UNIPROTKB|O04161514 AMT1-2 "Ammonium transporter 1 0.961 0.914 0.667 8.6e-175
TAIR|locus:2010791514 AMT1;2 "ammonium transporter 1 0.991 0.943 0.646 1.8e-172
TAIR|locus:2117758504 AMT1;4 "ammonium transporter 1 0.975 0.946 0.637 4e-170
UNIPROTKB|Q7XQ12498 AMT1-1 "Ammonium transporter 1 0.965 0.947 0.645 1.2e-168
UNIPROTKB|Q6K9G3498 AMT1-3 "Ammonium transporter 1 0.959 0.941 0.607 8.6e-159
UNIPROTKB|Q9FVN0460 AMT1-3 "Ammonium transporter 1 0.877 0.932 0.559 2.7e-132
TAIR|locus:2140877 AMT1;1 "ammonium transporter 1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1785 (633.4 bits), Expect = 5.2e-184, P = 5.2e-184
 Identities = 341/496 (68%), Positives = 379/496 (76%)

Query:     5 LSCSADQLASFFGPNATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQ 64
             +SCSA  LA   GPNAT   +AA+ IC QL  +NNKF DTA+A+D+TYLLFSAYLVFSMQ
Sbjct:     1 MSCSATDLAVLLGPNAT---AAANYICGQLGDVNNKFIDTAFAIDNTYLLFSAYLVFSMQ 57

Query:    65 LGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKS 124
             LGFAMLCAGSVRAKNTMNIMLTNVLD                  +PSNGFIG+H F LK 
Sbjct:    58 LGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGSPSNGFIGKHYFGLKD 117

Query:   125 FPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYPVVSHWFWSV 184
              PT++ DYS FLYQW               ERTQFVAYLIYSSFLTGFVYPVVSHWFWSV
Sbjct:   118 IPTASADYSNFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSV 177

Query:   185 DGWASASNT-GDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSV-LR 242
             DGWAS   T GDLLF +G IDFAGSGVVHMVGGIAGLWGA IEGPR+GRFD  G+++ LR
Sbjct:   178 DGWASPFRTDGDLLFSTGAIDFAGSGVVHMVGGIAGLWGALIEGPRLGRFDNGGRAIALR 237

Query:   243 GHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRXXXXXXXXXXXXX 302
             GHSASLVVLGTF+LWFGWYGFNPGSF KIL  Y TG++ GQWSA+GR             
Sbjct:   238 GHSASLVVLGTFLLWFGWYGFNPGSFNKILVTYETGTYNGQWSAVGRTAVTTTLAGCTAA 297

Query:   303 XXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLA 362
                 FGKR+LSGHWNVTDVCNGLLGGFAAIT GCSVVEPWAAI+CGFVAA+VL+ CNKLA
Sbjct:   298 LTTLFGKRLLSGHWNVTDVCNGLLGGFAAITGGCSVVEPWAAIICGFVAALVLLGCNKLA 357

Query:   363 EKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRN-----------SPYGLFMGGGGKLLAA 411
             EK KYDDPLEAAQLHGGCGAWG+IFTAL  +              P+GLFMGGGGKLL A
Sbjct:   358 EKLKYDDPLEAAQLHGGCGAWGLIFTALFAQEKYLNQIYGNKPGRPHGLFMGGGGKLLGA 417

Query:   412 HVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDDDVQS 471
              +IQI+V+ GWVSATMG LFFIL K+KLLRIS EDEMAGMD+TRHGGFAY+Y DDD+   
Sbjct:   418 QLIQIIVITGWVSATMGTLFFILKKMKLLRISSEDEMAGMDMTRHGGFAYMYFDDDE-SH 476

Query:   472 NGIQLRKIEPTATTPS 487
               IQLR++EP + +PS
Sbjct:   477 KAIQLRRVEPRSPSPS 492
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006810 "transport" evidence=ISS
GO:0008519 "ammonium transmembrane transporter activity" evidence=IEA;ISS;IMP;IDA
GO:0015695 "organic cation transport" evidence=ISS;IMP;IDA
GO:0016020 "membrane" evidence=ISS
GO:0015696 "ammonium transport" evidence=RCA;IDA
GO:0051258 "protein polymerization" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0080167 "response to karrikin" evidence=IEP
GO:0009737 "response to abscisic acid stimulus" evidence=IDA
GO:0010311 "lateral root formation" evidence=IMP
GO:0080181 "lateral root branching" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0001666 "response to hypoxia" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006820 "anion transport" evidence=RCA
GO:0006862 "nucleotide transport" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015802 "basic amino acid transport" evidence=RCA
GO:0031347 "regulation of defense response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0043269 "regulation of ion transport" evidence=RCA
UNIPROTKB|P58905 AMT1-1 "Ammonium transporter 1 member 1" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
TAIR|locus:2087173 AMT1;3 "ammonium transporter 1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087168 AMT1;5 "ammonium transporter 1;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O04161 AMT1-2 "Ammonium transporter 1 member 2" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
TAIR|locus:2010791 AMT1;2 "ammonium transporter 1;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117758 AMT1;4 "ammonium transporter 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XQ12 AMT1-1 "Ammonium transporter 1 member 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q6K9G3 AMT1-3 "Ammonium transporter 1 member 3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FVN0 AMT1-3 "Ammonium transporter 1 member 3" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9BLG3AMT2_DICDINo assigned EC number0.39410.84040.9535yesno
Q9SVT8AMT14_ARATHNo assigned EC number0.73580.97540.9464nono
Q9SQH9AMT13_ARATHNo assigned EC number0.75290.99180.9738nono
Q9FVN0AMT13_SOLLCNo assigned EC number0.64170.86090.9152N/Ano
O04161AMT12_SOLLCNo assigned EC number0.75290.98970.9416N/Ano
Q7XQ12AMT11_ORYSJNo assigned EC number0.74340.95090.9337yesno
P58905AMT11_SOLLCNo assigned EC number0.78340.97130.9733N/Ano
Q9LK16AMT15_ARATHNo assigned EC number0.75840.98970.9758nono
Q9ZPJ8AMT12_ARATHNo assigned EC number0.75990.94060.8949nono
P54144AMT11_ARATHNo assigned EC number0.78620.97950.9560yesno
P54145AMT1_CAEELNo assigned EC number0.34370.89570.8202yesno
Q6K9G1AMT12_ORYSJNo assigned EC number0.73580.95700.9435nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
TIGR00836403 TIGR00836, amt, ammonium transporter 1e-155
pfam00909399 pfam00909, Ammonium_transp, Ammonium Transporter F 1e-136
COG0004409 COG0004, AmtB, Ammonia permease [Inorganic ion tra 1e-101
TIGR03644404 TIGR03644, marine_trans_1, probable ammonium trans 4e-72
PRK10666428 PRK10666, PRK10666, ammonium transporter; Provisio 3e-39
>gnl|CDD|233145 TIGR00836, amt, ammonium transporter Back     alignment and domain information 
 Score =  447 bits (1152), Expect = e-155
 Identities = 191/425 (44%), Positives = 239/425 (56%), Gaps = 37/425 (8%)

Query: 51  TYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFG-- 108
            +LL +A LVF MQ GFA+L AG VR+KN +NIM+ N+LD A G L ++LFG++ AFG  
Sbjct: 2   AWLLIAAALVFFMQPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGED 61

Query: 109 TPSNGFIGRHNFALKSFPTSNF--------DYSYFLYQWAFAIAAAGITSGSIAERTQFV 160
            P NGFIG   F LK+F             D  +FL+Q  FA  AA I SG++AER +F 
Sbjct: 62  NPINGFIGTGGFGLKNFLYPGKISLAGTLPDLLFFLFQMMFAAIAATIISGAVAERMKFS 121

Query: 161 AYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGL 220
           AYL++S   T  VYP V+HW W   GW         L+  GV+DFAG GVVH+VGG+AGL
Sbjct: 122 AYLLFSVLWTTLVYPPVAHWVWGGGGW---------LYKLGVLDFAGGGVVHIVGGVAGL 172

Query: 221 WGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSH 280
             A + GPRIGRF R     +R H+  LVVLGTF+LWFGW+GFN GS      A N  + 
Sbjct: 173 AAALVLGPRIGRFPRP--VAIRPHNVPLVVLGTFILWFGWFGFNAGSA----LAANGTA- 225

Query: 281 YGQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVE 340
                     AV T LA     LT L    +  G   +   CNG+L G  AIT GC VV 
Sbjct: 226 -------AYAAVNTNLAAAAGGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVT 278

Query: 341 PWAAIVCGFVAAVV-LIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRR---NS 396
           PW AI+ G VA V+  +A +KL +K K DDPL+A  +HG  G WG+I T L         
Sbjct: 279 PWGAIIIGLVAGVLCYLAVSKLKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAAPKVGGV 338

Query: 397 PYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRH 456
             G  +GG GK L   +I I  +  W       +  IL K   LR+S E+E  G+DL  H
Sbjct: 339 GTGGLLGGNGKQLGVQLIGIAAIIAWAFVVTFIILKILDKTIGLRVSEEEEKIGLDLAEH 398

Query: 457 GGFAY 461
           G FAY
Sbjct: 399 GEFAY 403

The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally characterized members of the Amt family are ammonia or ammonium uptake transporters. Some, but not others, also transport methylammonium. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf [Transport and binding proteins, Cations and iron carrying compounds]. Length = 403
>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family Back     alignment and domain information
>gnl|CDD|223083 COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|234292 TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype Back     alignment and domain information
>gnl|CDD|182630 PRK10666, PRK10666, ammonium transporter; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 489
KOG0682500 consensus Ammonia permease [Inorganic ion transpor 100.0
COG0004409 AmtB Ammonia permease [Inorganic ion transport and 100.0
TIGR00836403 amt ammonium transporter. The mechanism of energy 100.0
TIGR03644404 marine_trans_1 probable ammonium transporter, mari 100.0
PRK10666428 ammonium transporter; Provisional 100.0
PF00909399 Ammonium_transp: Ammonium Transporter Family; Inte 100.0
KOG3796442 consensus Ammonium transporter RHBG [Intracellular 100.0
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-111  Score=875.53  Aligned_cols=419  Identities=51%  Similarity=0.878  Sum_probs=381.1

Q ss_pred             hhHHHHHHHHHhhhhcccc-cccchhHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 044248           26 AASLICSQLEAINNKFSDT-AYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFA  104 (489)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~-~~~~d~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~kn~~~~~v~~i~~~lvGy~  104 (489)
                      .++..+++.....+...+. -+.-|+.|++.++++||+|||||+|||+|+||+||++|+|+||++|.+++.+.||++||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~y~~dn~~~l~sss~lvF~M~~Gfg~L~sG~vr~Kna~nim~~nvld~a~g~l~y~~~Gys   87 (500)
T KOG0682|consen    8 TATYIRGAGGNVLTKFTPNAYDLDNTAWLLSSSFLVFTMQPGFGLLYSGLVRAKNAVNIMLKNVLDVAVGGLQYYLFGYS   87 (500)
T ss_pred             ccccccccccccccccCcchhcCCchhhHHHHHHHHHHhcccHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            4444444333223333333 344677888889999999999999999999999999999999999999999999999999


Q ss_pred             hhccCC-CCccccccc-cccccCCCC------CchhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHhhhhhccc
Q 044248          105 FAFGTP-SNGFIGRHN-FALKSFPTS------NFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPV  176 (489)
Q Consensus       105 lafG~~-~~g~iG~~~-f~l~~~~~~------~~~~~~~~fq~~Faa~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~  176 (489)
                      |+||+. .|+|||... |++.+.+.+      .+++.+++||++||+++++|++|+++||+|+++|++|+.+|.++||||
T Consensus        88 lAFg~~~~n~FiG~~~~F~~~~~~g~~~~~~~~p~~~~f~FQ~~FA~~a~~i~sGa~AER~~l~~~~v~~~~~~tlVY~~  167 (500)
T KOG0682|consen   88 LAFGDSPSNGFIGKLDFFGLRNVSGDPSSGSTIPDYSFFLFQGMFAATAATIVSGAVAERGRLKPYMVFSFFLTTLVYCP  167 (500)
T ss_pred             eeccCCCCCCceeeccccccccCCCCcCCccchhhHHHHHHHHHHHHHHHHHhhhHHHhhhcchhHHHHHHHHHHhcccc
Confidence            999987 799999965 777766422      248999999999999999999999999999999999999999999999


Q ss_pred             ccceeeccccccccccCCCcccCCceeeecCceEeehhhHHHHHHHHHhhcCCCCCCCCCCCcccCCCchHHHHhhHHHH
Q 044248          177 VSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFML  256 (489)
Q Consensus       177 vahWvW~~~GWL~~~~~~~~~~~lG~~DfaGs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~hs~~l~~lGt~lL  256 (489)
                      ++||+|+++||++         ++|++|||||++||++||++||++++++|||++||+ ++.+++||||+++++||++||
T Consensus       168 ~a~W~W~~~Gw~~---------~~gviDfAG~g~VHl~gG~agl~~a~~lGpR~~r~~-~~~~~~~~hsv~~v~LGt~lL  237 (500)
T KOG0682|consen  168 VAHWVWSPNGWLY---------KLGVIDFAGGGVVHLVGGVAGLVAALILGPRIGRFF-GKAIALRPHSVTLVVLGTFLL  237 (500)
T ss_pred             cceeeecCCceee---------ecceeeccCCceeEecccHHHHHHHHHhCCccCccc-ccccccCCCchhHHHHHHHHH
Confidence            9999999999998         589999999999999999999999999999999984 334459999999999999999


Q ss_pred             HHHhhhcCcccchhhhccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCceeecccccceeceeeeccCC
Q 044248          257 WFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGC  336 (489)
Q Consensus       257 w~GW~gFN~gs~~~~~~~~~~~~~~g~~~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaIta~~  336 (489)
                      ||||++||+||.+.++       . +.+   +|+++||+||++.|+++|++++++++|||++..+|||+|+|||||||+|
T Consensus       238 WfGWl~FN~GS~~~i~-------~-~~~---~~a~vnT~Ls~a~gglt~~~~d~~~~~kwsv~~~cnG~laGlVaiT~gc  306 (500)
T KOG0682|consen  238 WFGWLGFNGGSFYAIN-------L-RSW---ARAAVNTILSGATGGLTWLIIDYLRHGKWSVIGLCNGILAGLVAITPGC  306 (500)
T ss_pred             HHHHHccCCccccccc-------c-hhH---HHHHHHHHHHHhhhhhhhhhhhhhhcCCcchhhhHHHHHHHHHhhcCCC
Confidence            9999999999998872       1 111   3999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhHHHHHHHhhHHHHHHHhhhccccccccccCccccccchhhHHHHHHHHHhcCC----------CCccccccCch
Q 044248          337 SVVEPWAAIVCGFVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRN----------SPYGLFMGGGG  406 (489)
Q Consensus       337 ~~v~pw~AliiG~iag~v~~~~~~l~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~----------~~~G~~~gg~~  406 (489)
                      ++++||+|+++|++++++|..+.++++|+|||||+|++++||+||+||.|++|+|+.+.          .+.|+++++++
T Consensus       307 ~~v~pWaAiviG~va~~~~~~~~kL~~~lkvDDpl~~f~~Hgv~G~wG~I~~glFa~~~v~~~~~~~~~~~~G~~~~~~~  386 (500)
T KOG0682|consen  307 GVVEPWAAIVIGAVAGLVCNAANKLKERLKVDDPLDAFAVHGVGGIWGLIFTGLFAHDDVAAMDGTTIARISGLWMGHGF  386 (500)
T ss_pred             cccCcHHHHHHhHHHHHHHHHHHHHHHHhcCCcHHHHHHHhccccchhhheeeeeccCccccccCCCccCCCceeecchH
Confidence            99999999999999999999999999999999999999999999999999999999871          35799999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhccc-CCCCHHHHhcCCcccccccccCCCCC
Q 044248          407 KLLAAHVIQILVVAGWVSATMGPLFFILHKLKL-LRISPEDEMAGMDLTRHGGFAYVYHD  465 (489)
Q Consensus       407 ~~l~~Ql~g~~vi~~ws~~~~~i~~~il~~~~~-LRv~~e~E~~GlD~~~hg~~ay~~~~  465 (489)
                      +|++.|+.+++++.+|++++++++++++||+++ |||++|||+.|+|..||||.+|++.+
T Consensus       387 kqLg~Qla~i~ai~~ws~~~t~iilf~l~kip~~LRvs~e~E~~G~D~~~hGe~ay~~~~  446 (500)
T KOG0682|consen  387 KQLGYQLAGILAIAAWSAVVTFIILFLLNKIPLGLRVSEEEEELGMDATEHGEAAYDYHE  446 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeecCHHHHhcCCCHhhhhhhhcchhh
Confidence            999999999999999999999999999999999 99999999999999999999998755

>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00836 amt ammonium transporter Back     alignment and domain information
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype Back     alignment and domain information
>PRK10666 ammonium transporter; Provisional Back     alignment and domain information
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix Back     alignment and domain information
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
2b2f_A399 Ammonium Transporter Amt-1 From A.Fulgidus (Native) 1e-26
3c1h_A424 Substrate Binding, Deprotonation And Selectivity At 1e-24
2ns1_A412 Crystal Structure Of The E. Coli Ammonia Channel Am 1e-24
1xqe_A418 The Mechanism Of Ammonia Transport Based On The Cry 1e-24
2nmr_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 1e-24
2nuu_A415 Regulating The Escherichia Coli Ammonia Channel: Th 1e-24
3c1j_A424 Substrate Binding, Deprotonation And Selectivity At 8e-24
2now_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 9e-24
3c1i_A424 Substrate Binding, Deprotonation And Selectivity At 1e-23
2npd_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 1e-23
2npg_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 1e-23
2npc_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 2e-23
2npe_A424 An Unusual Twin-his Arrangement In The Pore Of Ammo 2e-23
2npk_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 2e-22
1u77_A385 Crystal Structure Of Ammonia Channel Amtb From E. C 5e-19
>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native) Length = 399 Back     alignment and structure 
Iteration: 1

 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 171/425 (40%), Gaps = 51/425 (12%)
Query: 49  DSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXX 108
           +  ++L S  LV  M  G     AG VR KN +N++  + +                   
Sbjct: 5   NVAWILASTALVMLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFG 64
Query: 109 TPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSF 168
              +G IG  N+AL S      D  + +YQ                ER +  ++++ S+ 
Sbjct: 65  NDISGIIGGLNYALLS-GVKGEDLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSAL 123
Query: 169 LTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGP 228
              FVY   +HW W   GW         L   G +DFAG  VVH+  G A L  A   G 
Sbjct: 124 WLTFVYAPFAHWLWG-GGW---------LAKLGALDFAGGMVVHISSGFAALAVAMTIGK 173
Query: 229 RIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIG 288
           R G  + S    +  HS  L ++G  +LWFGW+GFN GS    L+A +         AI 
Sbjct: 174 RAGFEEYS----IEPHSIPLTLIGAALLWFGWFGFNGGS---ALAANDV--------AIN 218
Query: 289 RXXXXXXXXXXXXXXXXXFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCG 348
                              G   + G      + +G + G AAIT     V+   AIV G
Sbjct: 219 AVVVTNTSAAVAGFVWMVIGW--IKGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIG 276
Query: 349 FVAAVVLIACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRN-SPYGLFMGGGGK 407
            VA +V         K K D+ L+A  +HG  G WG +   +L     + Y   + G  +
Sbjct: 277 LVAGIVCYLAMDFRIKKKIDESLDAWAIHGIGGLWGSVAVGILANPEVNGYAGLLFGNPQ 336
Query: 408 LLAAHVIQI-----------LVVAGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRH 456
           LL + +I +           L++A  V A +G           LR+S ++E  G+DL++H
Sbjct: 337 LLVSQLIAVASTTAYAFLVTLILAKAVDAAVG-----------LRVSSQEEYVGLDLSQH 385
Query: 457 GGFAY 461
              AY
Sbjct: 386 EEVAY 390
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb Complexed With The Signal Transduction Protein Glnk Length = 412 Back     alignment and structure
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal Structure Of Amtb Of E. Coli. Length = 418 Back     alignment and structure
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The Crystal Structure Of The Amtb-glnk Complex Length = 415 Back     alignment and structure
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli Length = 385 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
3b9w_A407 Ammonium transporter family; membrane protein, amm 6e-80
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 3e-77
1u7g_A385 Probable ammonium transporter; right handed helica 1e-65
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 2e-56
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Length = 407 Back     alignment and structure
 Score =  253 bits (649), Expect = 6e-80
 Identities = 78/419 (18%), Positives = 127/419 (30%), Gaps = 53/419 (12%)

Query: 72  AGSVRAKN-TMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHNFALKSFPTSNF 130
           A  V   N ++NI+   ++      +F   +GF+   GT      G   + L        
Sbjct: 11  ARLVAQYNYSINILAMLLVGFGFLMVFVRRYGFSATTGTYLVVATGLPLYILLRANGIFG 70

Query: 131 D-----YSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVD 185
                     +    FA+A   I  G++  R +   Y + + F+   VY +        +
Sbjct: 71  HALTPHSVDAVIYAEFAVATGLIAMGAVLGRLRVFQYALLALFIV-PVYLLNEWLVLD-N 128

Query: 186 GWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHS 245
                          G  D AGS  +H  G   GL  +        R            S
Sbjct: 129 AS---------GLTEGFQDSAGSIAIHAFGAYFGLGVSIALTTAAQRAQPIE---SDATS 176

Query: 246 ASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQWSAIGRTAVTTTLAGCTAALTT 305
               +LG+ +LW  W  F                    +  + +T V T LA C A L T
Sbjct: 177 DRFSMLGSMVLWLFWPSFATAI--------------VPFEQMPQTIVNTLLALCGATLAT 222

Query: 306 L-FGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIAC-----N 359
                    G  ++ D+ N  L G  AI + C++V P  A V G +   + +        
Sbjct: 223 YFLSALFHKGKASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQP 282

Query: 360 KLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGLFMGGGGKLLAAHVIQILVV 419
            L  KAK  D      LHG  G  G     L+                +  A +  I + 
Sbjct: 283 MLESKAKTIDTCGVHNLHGLPGLLGGFSAILI-------------VPGIAVAQLTGIGIT 329

Query: 420 AGWVSATMGPLFFILHKLKLLRISPEDEMAGMDLTRHGGFAYVYHDDDDVQSNGIQLRK 478
                        ++      + + ED    + L              + ++    L+ 
Sbjct: 330 LALALIGGVIAGALIKLTGTTKQAYEDSHEFIHLAGPEDEHKAERLVLEAKTEIQGLKN 388
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Length = 399 Back     alignment and structure
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Length = 385 Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Length = 490 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query489
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 100.0
1u7g_A385 Probable ammonium transporter; right handed helica 100.0
3b9w_A407 Ammonium transporter family; membrane protein, amm 100.0
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 100.0
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Back     alignment and structure
Probab=100.00  E-value=3.2e-109  Score=861.68  Aligned_cols=391  Identities=30%  Similarity=0.511  Sum_probs=360.8

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccc-ccccccc
Q 044248           46 YAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGR-HNFALKS  124 (489)
Q Consensus        46 ~~~d~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~kn~~~~~v~~i~~~lvGy~lafG~~~~g~iG~-~~f~l~~  124 (489)
                      +..|+.|+|+|++|||+|||||+|+|+|++|+||++|+++||++|++++++.||++||+++||++.++|||+ .++++.+
T Consensus         2 ~~~d~~w~l~~~~LV~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~~~~~iG~~~~~~~~~   81 (399)
T 2b2h_A            2 SDGNVAWILASTALVMLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYALLSG   81 (399)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSEETTTEECSTTGGGTT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCchHhhccC
Confidence            357999999999999999999999999999999999999999999999999999999999999766789998 4566654


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHhhhhhcccccceeeccccccccccCCCcccCCceee
Q 044248          125 FPTSNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVID  204 (489)
Q Consensus       125 ~~~~~~~~~~~~fq~~Faa~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~vahWvW~~~GWL~~~~~~~~~~~lG~~D  204 (489)
                      ...  .++.+++||++||+++++|++|+++||+|+.+|++|+++|+++||||++||+|+ +|||.         ++|++|
T Consensus        82 ~~~--~~~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~---------~lG~~D  149 (399)
T 2b2h_A           82 VKG--EDLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWG-GGWLA---------KLGALD  149 (399)
T ss_dssp             CCT--HHHHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHH---------HTTCCC
T ss_pred             CCC--CchhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhhhheEC-chhHH---------hcCCcc
Confidence            432  248899999999999999999999999999999999999999999999999998 89997         489999


Q ss_pred             ecCceEeehhhHHHHHHHHHhhcCCCCCCCCCCCcccCCCchHHHHhhHHHHHHHhhhcCcccchhhhccccCCCCCCcc
Q 044248          205 FAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYGQW  284 (489)
Q Consensus       205 faGs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~hs~~l~~lGt~lLw~GW~gFN~gs~~~~~~~~~~~~~~g~~  284 (489)
                      ||||++||++||++||+++++||||++|.    ++.+||||++++++|+++||+||||||+||++..       +     
T Consensus       150 FAGs~vVH~~gG~~aL~~a~~LG~R~g~~----~~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~-------~-----  213 (399)
T 2b2h_A          150 FAGGMVVHISSGFAALAVAMTIGKRAGFE----EYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAA-------N-----  213 (399)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHCCCTTTT----TSCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSS-------S-----
T ss_pred             ccCCeEEEechhHHHHHHHHHcCCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHhhcHHhhccc-------c-----
Confidence            99999999999999999999999999863    2347999999999999999999999999998765       2     


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCceeecccccceeceeeeccCCCCcchhHHHHHHHhhHHHHHHHhhhccc
Q 044248          285 SAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNKLAEK  364 (489)
Q Consensus       285 ~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaIta~~~~v~pw~AliiG~iag~v~~~~~~l~~k  364 (489)
                      ..++++++||++|+++|+++|+++++++ ||+|+..++||+|||||+|||+|++++||+|++||+++|++|+...++++|
T Consensus       214 ~~a~~a~~nT~lAaaag~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~l~~k  292 (399)
T 2b2h_A          214 DVAINAVVVTNTSAAVAGFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMDFRIK  292 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999 999999999999999999999999999999999999999999776688999


Q ss_pred             cccccccCccccccchhhHHHHHHHHHhcCC--CCccccccCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcccCCC
Q 044248          365 AKYDDPLEAAQLHGGCGAWGVIFTALLLRRN--SPYGLFMGGGGKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRI  442 (489)
Q Consensus       365 l~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~--~~~G~~~gg~~~~l~~Ql~g~~vi~~ws~~~~~i~~~il~~~~~LRv  442 (489)
                      +|||||||++++||+||+||+|++|+|+++.  ...|++| ++.+|++.|++|++++++|+++.++++++++|++.+|||
T Consensus       293 l~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~g~~Gl~~-g~~~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~~glRv  371 (399)
T 2b2h_A          293 KKIDESLDAWAIHGIGGLWGSVAVGILANPEVNGYAGLLF-GNPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAVGLRV  371 (399)
T ss_dssp             TTCCCTTCHHHHHHHHHHHHHHHHHHHCCHHHHSCCCGGG-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBC
T ss_pred             cCCCCCCCceeccchhhHHHHHHHHHHccccccCCCcccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence            9999999999999999999999999999752  1247888 568999999999999999999999999999999999999


Q ss_pred             CHHHHhcCCcccccccccCCCCCC
Q 044248          443 SPEDEMAGMDLTRHGGFAYVYHDD  466 (489)
Q Consensus       443 ~~e~E~~GlD~~~hg~~ay~~~~~  466 (489)
                      ++|||++|||.+||||++|+++.+
T Consensus       372 ~~e~E~~GlD~~~hg~~ay~~~~~  395 (399)
T 2b2h_A          372 SSQEEYVGLDLSQHEEVAYTLEHH  395 (399)
T ss_dssp             CHHHHHHCHHHHHHCCCSCC----
T ss_pred             CHHHHHhCCCHHHhCcccCCcccc
Confidence            999999999999999999997654
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 489
d1u7ga_383 f.44.1.1 (A:) Ammonium transporter AmtB {Escherich 2e-51
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Length = 383 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

 Score =  177 bits (449), Expect = 2e-51
 Identities = 103/403 (25%), Positives = 169/403 (41%), Gaps = 35/403 (8%)

Query: 49  DSTYLLFSAYLVFSMQL-GFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAF 107
           D+ +++    LV  M + G A+   G +R KN ++++    +  A   + + ++G++ A 
Sbjct: 7   DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAS 66

Query: 108 GTPSNGFIGRHNFALKSFPTSN-----FDYSYFLYQWAFAIAAAGITSGSIAERTQFVAY 162
           G  +N F   +   LK+   +      + Y +  +Q +FA    G+  G++AER +F A 
Sbjct: 67  GEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAV 126

Query: 163 LIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDLLFGSGVIDFAGSGVVHMVGGIAGLWG 222
           LI+        Y  ++H  W           G LL   G +DFAG  VVH+   IAGL G
Sbjct: 127 LIFVVVWLTLSYIPIAHMVWG----------GGLLASHGALDFAGGTVVHINAAIAGLVG 176

Query: 223 AYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYNTGSHYG 282
           AY     IG+    G+   + H+  +V  GT +L+ GW+G            +N GS   
Sbjct: 177 AY----LIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFG------------FNAGSAGT 220

Query: 283 QWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPW 342
                    V T +A   A L  +FG+  L G  ++   C+G + G   +T  C  +   
Sbjct: 221 ANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVG 280

Query: 343 AAIVCGFVAAVVL-IACNKLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGLF 401
            A++ G VA +        L    + DDP +   +HG CG  G I T +    +     F
Sbjct: 281 GALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGF 340

Query: 402 MGGG--GKLLAAHVIQILVVAGWVSATMGPLFFILHKLKLLRI 442
             G   G  L   +  I +   W        + +      LR+
Sbjct: 341 AEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 383

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query489
d1u7ga_383 Ammonium transporter AmtB {Escherichia coli [TaxId 100.0
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-92  Score=731.99  Aligned_cols=371  Identities=28%  Similarity=0.488  Sum_probs=335.6

Q ss_pred             ccccchhHHHHHHHHHHHHHH-HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCcccccc-ccc
Q 044248           44 TAYAVDSTYLLFSAYLVFSMQ-LGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRH-NFA  121 (489)
Q Consensus        44 ~~~~~d~~w~l~~~~lV~~M~-~Gfalle~G~vr~kn~~~il~kn~~~~~v~~i~~~lvGy~lafG~~~~g~iG~~-~f~  121 (489)
                      +.++.|++|+++|++||++|| |||+|+|+|+||+||++|+++||++|++++++.||++||+++||++ ++++|+. ++.
T Consensus         2 ~~d~~d~~~~l~~~~lV~~m~~~Gf~lle~G~vr~kn~~~~~~k~~~~~~~~~i~~~~~Gy~lafg~~-~~~~g~~~~~~   80 (383)
T d1u7ga_           2 VADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWLM   80 (383)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTGG
T ss_pred             CcCcccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHheeeEeEEeEcCCC-CCcCCCcchhh
Confidence            457799999999999999998 8999999999999999999999999999999999999999999965 6677774 444


Q ss_pred             cccCCCC-----CchhhHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHhhhhhcccccceeeccccccccccCCCc
Q 044248          122 LKSFPTS-----NFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDL  196 (489)
Q Consensus       122 l~~~~~~-----~~~~~~~~fq~~Faa~aatIvsGavaeR~~~~~yli~a~l~~~~VYp~vahWvW~~~GWL~~~~~~~~  196 (489)
                      +.+.+.+     .+++.+++||++||+++++|++|+++||+|+++|++|+++|++++|||++||+|+ +|||.       
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~~~~~~vy~~~~hwvw~-~g~l~-------  152 (383)
T d1u7ga_          81 LKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWG-GGLLA-------  152 (383)
T ss_dssp             GTTCCTTCEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHH-------
T ss_pred             ccCcccccccccchhhHHhHhhhhhhhhhccccccccccccceeEeeehhhHhhhhccchHHheecC-CCccc-------
Confidence            4433221     2568999999999999999999999999999999999999999999999999997 79997       


Q ss_pred             ccCCceeeecCceEeehhhHHHHHHHHHhhcCCCCCCCCCCCcccCCCchHHHHhhHHHHHHHhhhcCcccchhhhcccc
Q 044248          197 LFGSGVIDFAGSGVVHMVGGIAGLWGAYIEGPRIGRFDRSGQSVLRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSAYN  276 (489)
Q Consensus       197 ~~~lG~~DfaGs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~hs~~l~~lGt~lLw~GW~gFN~gs~~~~~~~~~  276 (489)
                        ++|++|||||++||++||+++|++++++|||++|+++    .+||||++++.+|+++||+||+|||+||+...     
T Consensus       153 --~lG~~DfaGs~vVH~~gG~~aL~~~~~lgpR~~~~~~----~~~~~~~~~~~lG~~iLw~gW~gFN~gs~~~~-----  221 (383)
T d1u7ga_         153 --SHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKE----AFKPHNLPMVFTGTAILYIGWFGFNAGSAGTA-----  221 (383)
T ss_dssp             --HHTCCCSSCTTTTHHHHHHHHHHHHHHSCCCCCTTCS----SCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSS-----
T ss_pred             --cCCceeccCceeeeecccHHHHHHHHhcCCccccccc----ccccCChhhhhHHHHHHHHHHHHhcccccccc-----
Confidence              5899999999999999999999999999999998643    37899999999999999999999999997654     


Q ss_pred             CCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCceeecccccceeceeeeccCCCCcchhHHHHHHHhhHHHHH
Q 044248          277 TGSHYGQWSAIGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLI  356 (489)
Q Consensus       277 ~~~~~g~~~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaIta~~~~v~pw~AliiG~iag~v~~  356 (489)
                        +     ....++.+||++|++++++++++.+++++||+|+.+++||+|||||+|||+|++++||+|++||+++|++|+
T Consensus       222 --~-----~~~~~~~~nt~~a~a~~~~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~  294 (383)
T d1u7ga_         222 --N-----EIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGL  294 (383)
T ss_dssp             --S-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             --c-----hHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhhhhcccCccccchhhHHHHHhhccHHHH
Confidence              1     456789999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             HHh-hhccccccccccCccccccchhhHHHHHHHHHhcCCCCcccccc---CchHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 044248          357 ACN-KLAEKAKYDDPLEAAQLHGGCGAWGVIFTALLLRRNSPYGLFMG---GGGKLLAAHVIQILVVAGWVSATMGPLFF  432 (489)
Q Consensus       357 ~~~-~l~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~~~G~~~g---g~~~~l~~Ql~g~~vi~~ws~~~~~i~~~  432 (489)
                      ... .+++|+|||||||++++||+||+||++++|+|+++.. .|..+.   ..++|++.|++|++++++|+++.++++++
T Consensus       295 ~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glfa~~~~-~g~~~~~~~~~~~ql~~Ql~g~~v~~~~~~~~~~ii~~  373 (383)
T d1u7ga_         295 WGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL-GGVGFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYK  373 (383)
T ss_dssp             HHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTSGGG-TCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccccceEeehhhhHHHHHHHHHHhcCccc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554 4557899999999999999999999999999998631 123222   24689999999999999999999999999


Q ss_pred             HHHhcccCCC
Q 044248          433 ILHKLKLLRI  442 (489)
Q Consensus       433 il~~~~~LRv  442 (489)
                      ++||+.+|||
T Consensus       374 il~~~~gLRV  383 (383)
T d1u7ga_         374 LADLTVGLRV  383 (383)
T ss_dssp             HHHHHTCSBC
T ss_pred             HHHhCcCCcC
Confidence            9999999997