Citrus Sinensis ID: 044314

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------
Protein Sequence
MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEAGSFLLKFPHVFEIYEHPVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEFGLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCAIEKVREKEYRERGIDAEDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRAVATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVFLREAYRKGELLEPNDLYLARRKLGELVLMSPRKVKMDTELVRNRRDRHDGGGYMGRSTVVHANNGFDNFGVKENAGGDQKGDADLDSDLGSNVESDTSDENDDYDSVETIDAEDYDMGM
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccccccHHHHHHHHccccEEEEcccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccEEcHHHHHHHHHHccccHHHHHHHHHcccccEEEEEccccccccEEEcccccccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccEEEEEEcccccEEEEEEEccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcccccEcHHHHHHHHHHcccccHHHHHHHHHcccEEEEEccccccccEEcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHcccccEEEEEcccccccEEEEEccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHcccEEEEEEccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccc
Coil and Loop (DISEMBL)
MEIEKKMRKVLKFQTLFLSqhnqtlpvsrlDFLARRVGFkrqeagsfllkfphvfeiyehpvqRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSnsgclrleHVRIArtefglpedfeYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCAIEKVREKEYrergidaediRFSFlvnfppgfkigkyYRIAVWKwqrvpywspyedvsgydlRSLEAQKRMEKRAVATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIfyistrgnhgklHTVFLREAyrkgellepndLYLARRKLGElvlmsprkvkmdtelvrnrrdrhdgggymgRSTVVHanngfdnfgvkenaggdqkgdadldsdlgsnvesdtsdenddydsvetidaedydmgm
Flexible Loop (DISEMBL)
MEIEKKMRKVLKFQTLFlsqhnqtlpvsrLDFLARRVGFKRQEAGSFLLKFPHVFEIYEHPVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEFGLPEDFEYSVVLKNAQFFRLFNAKESTEKYIelvgrdpslavcAIEKVRekeyrergidaedirfsflvnfppgFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRAVATIhelltltvekkiTLERIAHFRLAMNLPKKLKEFLLQHQGIFYistrgnhgKLHTVFLREAyrkgellepndlYLARRKlgelvlmsprkvkmdtelvrnrrdrhdgggymGRSTVVHANNGFDNFGVKENAGGDQKGDADLDSDLGSnvesdtsdenddydsvetidaedydmgm
Low Complexity Region (SEG)
MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEAGSFLLKFPHVFEIYEHPVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEFGLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCAIEKVREKEYRERGIDAEDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRAVATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVFLREAYRKGELLEPNDLYLARRKLGELVLMSPRKVKMDTELVRNRRDRHDGGGYMGRSTVVHANNGFDNFGVKENAGGDQKGDADLDSDLGSNVESDTSDENDDYDSVETIDAEDYDMGM
Disordered region (IsUnstruct)
*********VLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEAGSFLLKFPHVFEIYEHPVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEFGLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCAIEKVREKEYRERGIDAEDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRAVATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVFLREAYRKGELLEPNDLYLARRKLGELVLMSP*************************STVVHANNGFD****************************************************
Disordered Region (DISOPRED)
*EIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEAGSFLLKFPHVFEIYEHPVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEFGLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCA********************FSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGY*L******KRMEKRAVATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVFLREAYRKGELLEPNDLYLARRKLGELV********************************************************************************************
Disordered Region (DISEMBL)
MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEAGSFLLKFPHVFEIYEHPVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEFGLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCAIEKVREKEYRERGIDAEDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRAVATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVFLREAYRKGELLEPNDLYLARRKLGELVLMSPRKVKMDTELVRNRRDRHDGGGYMGRSTVVHANNGFDNFGVKENAGGDQKGDADLDSD***************YDSVETIDAEDYDMGM
Disordered Region (DISPRO)
MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEAGSFLLKFPHVFEIYEHPVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEFGLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCAIEKVREKEYRERGIDAEDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRAVATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVFLREAYRKGELLEPNDLYLARRKLGELVLMSPR****D**L*RN************RSTV******F*****************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEAGSFLLKFPHVFEIYEHPVQRILYxxxxxxxxxxxxxxxxxxxxxIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEFGLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCAIEKVREKEYRERGIDAEDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRAVATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVFLREAYRKGELLEPNDLYLARRKLGELVLMSPRKVKMDTELVRNRRDRHDGGGYMGRSTVVHANNGFDNFGVKENAGGDQKGDADLDSDLGSNVESDTSDENDDYDSVETIDAEDYDMGM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
359490387	457	PREDICTED: uncharacterized protein LOC10	0.976	0.890	0.756	1e-177
255539511	432	conserved hypothetical protein [Ricinus	0.956	0.923	0.739	1e-175
449451920	428	PREDICTED: uncharacterized protein LOC10	0.966	0.941	0.743	1e-174
356561687	462	PREDICTED: uncharacterized protein LOC10	0.928	0.837	0.732	1e-167
224136960	409	predicted protein [Populus trichocarpa]	0.923	0.941	0.751	1e-165
297798580	1070	hypothetical protein ARALYDRAFT_328389 [	0.832	0.324	0.769	1e-161
4490317	1066	putative protein [Arabidopsis thaliana]	0.820	0.320	0.773	1e-161
22329123	409	Ubiquitin carboxyl-terminal hydrolase fa	0.820	0.836	0.773	1e-157
26452650	354	unknown protein [Arabidopsis thaliana]	0.820	0.966	0.770	1e-156
125526862	679	hypothetical protein OsI_02874 [Oryza sa	0.911	0.559	0.478	5e-99

>gi|359490387|ref|XP_002274057.2| PREDICTED: uncharacterized protein LOC100245174 [Vitis vinifera]

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 311/411 (75%), Positives = 352/411 (85%), Gaps = 4/411 (0%)

Query: 1   MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEAGSFLLKFPHVFEIYEH 60
           ME+EKK+RK+LKFQ LFL Q +QTLPVSRLD LARR+ FK+ EAG+F+LKFPHVFEIYEH
Sbjct: 50  MEVEKKLRKILKFQDLFLCQPHQTLPVSRLDTLARRLDFKQHEAGAFILKFPHVFEIYEH 109

Query: 61  PVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEF 120
           PV+RILYCRLTRKA LQIEQE +ALN QIP+AVTRLRKLLMMSN+G LRLEH+RIAR E 
Sbjct: 110 PVRRILYCRLTRKAHLQIEQENRALNDQIPDAVTRLRKLLMMSNTGRLRLEHIRIARREL 169

Query: 121 GLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCAIEKVREKEYRERGIDA 180
           GLP+DFEYSV+LKN QFFRLF+AKE+  KYIE+V  DP+LAVCAIEK+REKEYRE+GIDA
Sbjct: 170 GLPDDFEYSVILKNPQFFRLFDAKETRNKYIEIVESDPTLAVCAIEKLREKEYREKGIDA 229

Query: 181 EDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRAVA 240
           EDIRFSF+VNFPPGFKIGKYYRIAVWKWQR+PYWSPYEDVSGYDLRSLEAQKRMEKRA+A
Sbjct: 230 EDIRFSFIVNFPPGFKIGKYYRIAVWKWQRIPYWSPYEDVSGYDLRSLEAQKRMEKRAIA 289

Query: 241 TIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVFLR 300
           TIHELL+LTVEKKI+LERIAHFR AMNLPKKLKEFLLQHQGIFYISTRGN GKLHTVFLR
Sbjct: 290 TIHELLSLTVEKKISLERIAHFRQAMNLPKKLKEFLLQHQGIFYISTRGNFGKLHTVFLR 349

Query: 301 EAYRKGELLEPNDLYLARRKLGELVLMSPRKVKMDTELVRNRRDRHDGGGYMGRSTVVHA 360
           EAY+KGEL+EPNDLYLARRKL ELVL+SPRK  +D ELV  RRDR D    M R    + 
Sbjct: 350 EAYKKGELIEPNDLYLARRKLAELVLLSPRKANVDRELVNYRRDREDDE--MVRIQSDYV 407

Query: 361 NNGFDNFGVKENAGGDQKGDADLDSDLGSNVESDTSDENDDYDSVETIDAE 411
            + F+ F  + N   D +   D D +L S+  SD SDE++  +  ET+DAE
Sbjct: 408 ESRFEGFVDENNFRQDGERGRDSDLNLDSDAGSDFSDEDNKCE--ETVDAE 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539511|ref|XP_002510820.1| conserved hypothetical protein [Ricinus communis] gi|223549935|gb|EEF51422.1| conserved hypothetical protein [Ricinus communis]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 309/418 (73%), Positives = 355/418 (84%), Gaps = 19/418 (4%)

Query: 1   MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEAGSFLLKFPHVFEIYEH 60
           MEIEKK RKVLKFQ+L LSQ NQTL +SRL+ LARR+G K+ EAG+F+LKFPH+FE+YEH
Sbjct: 23  MEIEKKTRKVLKFQSLILSQINQTLTISRLETLARRLGCKQYEAGTFILKFPHIFEVYEH 82

Query: 61  PVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEF 120
           PVQR+LYCRLTRKALLQI+QEK+AL AQIP AV RLRKL+MMSN+G LRLEHVRIAR+ F
Sbjct: 83  PVQRVLYCRLTRKALLQIQQEKEALIAQIPTAVMRLRKLIMMSNTGRLRLEHVRIARSAF 142

Query: 121 GLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCAIEKVREKEYRERGIDA 180
           GLP+DFEYSVVLKN Q+FRL + K++  KYIE+V +DP LAVCAIEKVRE+EYRE+G+DA
Sbjct: 143 GLPDDFEYSVVLKNPQYFRLVDGKDTRNKYIEIVDKDPELAVCAIEKVREREYREKGMDA 202

Query: 181 EDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRAVA 240
           EDIRFSF++NFPPGFKIGKYYRIAVWKWQR PYWSPYEDVSGYDLRS+EAQKRMEKRAVA
Sbjct: 203 EDIRFSFIINFPPGFKIGKYYRIAVWKWQRSPYWSPYEDVSGYDLRSIEAQKRMEKRAVA 262

Query: 241 TIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVFLR 300
           TIHELL+LTVEK+ITLERIAHFRLAMNLP KLK+FLLQHQGIFY+STRGN GKLHTVFLR
Sbjct: 263 TIHELLSLTVEKRITLERIAHFRLAMNLPNKLKDFLLQHQGIFYVSTRGNLGKLHTVFLR 322

Query: 301 EAYRKGELLEPNDLYLARRKLGELVLMSPRKVKMDTELVRNRRDRHD------GGGYMGR 354
           EAY+KGEL+EPNDLYLARRKLGELVLMSPRK KMD ELV  RRDR           Y+  
Sbjct: 323 EAYKKGELVEPNDLYLARRKLGELVLMSPRKAKMDRELVSYRRDRECQEMEKFAADYL-E 381

Query: 355 STVVHANNGFDNFGVKENAGGDQKGDADLDSDLGSNVESDTSDENDDYDSVETIDAED 412
           + V   NNG D         G+++ D DL+ DLGS+V SD SD  D  D+V+ +++ED
Sbjct: 382 NDVETGNNGQD---------GEEEED-DLNLDLGSDVTSDFSDGMD--DAVDVVNSED 427

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451920|ref|XP_004143708.1| PREDICTED: uncharacterized protein LOC101208717 [Cucumis sativus] gi|449520006|ref|XP_004167025.1| PREDICTED: uncharacterized protein LOC101232053 [Cucumis sativus]

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 304/409 (74%), Positives = 352/409 (86%), Gaps = 6/409 (1%)

Query: 1   MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEAGSFLLKFPHVFEIYEH 60
           ME+EKK RKVLKFQ L LSQ NQT+PVSRLD LARR+GFK+ EAG+F+LKFPHVFEIYEH
Sbjct: 23  MEVEKKTRKVLKFQELILSQFNQTIPVSRLDILARRLGFKQHEAGAFVLKFPHVFEIYEH 82

Query: 61  PVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEF 120
           PVQRILYCRLTRKA LQIEQ+K+A+ AQIP+AVTRLRKLLMMSN+G LRLEH+RIAR+EF
Sbjct: 83  PVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRKLLMMSNNGRLRLEHIRIARSEF 142

Query: 121 GLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCAIEKVREKEYRERGIDA 180
           GLP+DFEYSVVLK+ QFFRLF+AKE+  KYIE+V RDPSL VCAIE+ RE+ YRE+G DA
Sbjct: 143 GLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSLTVCAIERARERVYREKGSDA 202

Query: 181 EDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRAVA 240
           EDIRFSF+VNFPPGFKIGKY+RIA+WKWQR+PYWSPYED+S YD+RS+EAQKRMEKRAVA
Sbjct: 203 EDIRFSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDISEYDMRSIEAQKRMEKRAVA 262

Query: 241 TIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVFLR 300
           TIHE+L+LTVEKKITLERIAHFRLAM LPKKLK+FLLQHQGIFYISTRGNHGKLHTVFLR
Sbjct: 263 TIHEMLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQHQGIFYISTRGNHGKLHTVFLR 322

Query: 301 EAYRKGELLEPNDLYLARRKLGELVLMSPRKVKMDTELVRNRRDRHDGGGYMGRSTVVHA 360
           E YR+ EL+EPND+YLARR+L ELVL+SPRK  +D ELV  RR+R   G  M  S   + 
Sbjct: 323 EGYRRSELVEPNDVYLARRQLAELVLLSPRKATVDRELVGYRRER--VGYDMENSRTDYV 380

Query: 361 NNGFDNFGVKENAGGDQKGDADLDSDLGSNVESDTSDENDDYDSVETID 409
            +   +FGV EN G  +     LDSD+GS+VESD SD+++    VE +D
Sbjct: 381 EDKSVDFGV-ENKGNVRDV---LDSDIGSDVESDFSDDDNHSVEVEDVD 425

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561687|ref|XP_003549111.1| PREDICTED: uncharacterized protein LOC100782167 [Glycine max]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 285/389 (73%), Positives = 336/389 (86%), Gaps = 2/389 (0%)

Query: 1   MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEAGSFLLKFPHVFEIYEH 60
           ME+EKK RKVLKFQ L LS+ +Q+LP+SRL+ LARR GF R E+G+F+LKFPHVFEI+EH
Sbjct: 55  MEVEKKTRKVLKFQNLILSEPSQSLPISRLETLARRFGFTRHESGAFVLKFPHVFEIFEH 114

Query: 61  PVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEF 120
           PVQRIL+CRLTRKA+LQIEQE++AL A++P AVTRLRKLLMMSN G LRLEHVRIAR  +
Sbjct: 115 PVQRILFCRLTRKAILQIEQERRALAAELPRAVTRLRKLLMMSNHGRLRLEHVRIARAAY 174

Query: 121 GLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCAIEKVREKEYRERGIDA 180
           GLP+DFE SVVL+  QFFRL +AKE+  KYIE+V RDP L  CAIE+ RE+ YRERG DA
Sbjct: 175 GLPDDFENSVVLRYPQFFRLIDAKETRNKYIEVVERDPGLGTCAIEEARERVYRERGSDA 234

Query: 181 EDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRAVA 240
           EDIRFSF+++FPPGFKIGKY+RIA+WKWQR+PYWSPYEDVSGYDLRS+EAQKRMEKRAVA
Sbjct: 235 EDIRFSFVIDFPPGFKIGKYFRIAMWKWQRLPYWSPYEDVSGYDLRSIEAQKRMEKRAVA 294

Query: 241 TIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVFLR 300
           TIHELL+LTVEKKITLERIAHFR+AMNLPKKLK+FLLQHQGIFY+STRGN GKLHTVFLR
Sbjct: 295 TIHELLSLTVEKKITLERIAHFRMAMNLPKKLKDFLLQHQGIFYVSTRGNQGKLHTVFLR 354

Query: 301 EAYRKGELLEPNDLYLARRKLGELVLMSPRKVKMDTELVRNRRDRHDGGGYMGRSTVVHA 360
           EAYRKGEL+EPN+LYLARRKL ELVL+SPRK K+D ELV  RR R +    MG+ T  + 
Sbjct: 355 EAYRKGELIEPNELYLARRKLAELVLLSPRKAKVDGELVGYRRSRLEDE--MGQVTRAYV 412

Query: 361 NNGFDNFGVKENAGGDQKGDADLDSDLGS 389
            +  ++F  K+++G D+  + DL SD+GS
Sbjct: 413 EDACEDFKGKDDSGRDKDAEDDLTSDIGS 441

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136960|ref|XP_002322459.1| predicted protein [Populus trichocarpa] gi|222869455|gb|EEF06586.1| predicted protein [Populus trichocarpa]

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 294/391 (75%), Positives = 332/391 (84%), Gaps = 6/391 (1%)

Query: 1   MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEAGSFLLKFPHVFEIYEH 60
           MEIEKK RKVLKFQ+L LSQ+NQTLP+SRLD LA R+GFK+ EAG+F+LKFPHVFE+YEH
Sbjct: 1   MEIEKKTRKVLKFQSLILSQYNQTLPISRLDNLAGRLGFKQFEAGAFILKFPHVFEVYEH 60

Query: 61  PVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEF 120
           PVQR+LYCRLTRKA+ QI QEK+AL AQIP+AVTRLRKL+MMSN G LRLEHVRIAR EF
Sbjct: 61  PVQRVLYCRLTRKAVNQIMQEKEALLAQIPDAVTRLRKLIMMSNEGRLRLEHVRIARYEF 120

Query: 121 GLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCAIEKVREKEYRERGIDA 180
           GLP+DFEYSVVLK  QFFRL +A E+  KYIE+V RD  L VCAIEKVRE+EYRE+G+DA
Sbjct: 121 GLPDDFEYSVVLKYPQFFRLVDASETRNKYIEVVDRDRRLTVCAIEKVREREYREKGMDA 180

Query: 181 EDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRAVA 240
           ED+RF F+VNFPPGFKIGKYYRIAVWKWQRVPYWSPYED+SGYDLRS+EAQKRMEKRAVA
Sbjct: 181 EDVRFKFMVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDISGYDLRSIEAQKRMEKRAVA 240

Query: 241 TIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVFLR 300
           TIHELL+LTVEKKIT+ERIAHFR+AMNLP KLK FLLQHQ IFY+STRGNHGKLHTVFLR
Sbjct: 241 TIHELLSLTVEKKITMERIAHFRMAMNLPNKLKGFLLQHQEIFYVSTRGNHGKLHTVFLR 300

Query: 301 EAYRKGELLEPNDLYLARRKLGELVLMSPRKVKMDTELVRNRRDRHDGGGYMGRSTVVHA 360
           EAYRKGEL+EPN LYLARRKL ELVL S RK  +D  LV  R DR D    M R     +
Sbjct: 301 EAYRKGELVEPNGLYLARRKLCELVLTSSRKANVDRGLVHYRGDREDDE--MERFRRDCS 358

Query: 361 NNGFDNFGVKENAGGDQKGDADLD--SDLGS 389
            +GF+  G KE   G+++ D +LD   D+GS
Sbjct: 359 EDGFE--GGKEGKDGEREDDLNLDLSCDVGS 387

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798580|ref|XP_002867174.1| hypothetical protein ARALYDRAFT_328389 [Arabidopsis lyrata subsp. lyrata] gi|297313010|gb|EFH43433.1| hypothetical protein ARALYDRAFT_328389 [Arabidopsis lyrata subsp. lyrata]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 270/351 (76%), Positives = 313/351 (89%), Gaps = 4/351 (1%)

Query: 1    MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVG--FKRQEAGSFLLKFPHVFEIY 58
            ME+EKK+RKV+KF +L LSQ N T+ +S LD LARR+G  FK+ E G+FLLKFPHVFEIY
Sbjct: 717  MEVEKKIRKVIKFHSLILSQPNNTIAISLLDTLARRLGLGFKQHEPGAFLLKFPHVFEIY 776

Query: 59   EHPVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIART 118
            EHPVQRILYCRLTRKAL QI  E +A+ AQIP+ VTRLRKL+MMSN+G +RLEHVRIART
Sbjct: 777  EHPVQRILYCRLTRKALDQIRHEHEAVLAQIPDVVTRLRKLVMMSNTGRIRLEHVRIART 836

Query: 119  EFGLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCAIEKVREKEYRERGI 178
            EFGLPEDFEYSV+LK+ QFFRL +A+E+ +KYIE+V +DP+L++CAIE+VRE EYR +GI
Sbjct: 837  EFGLPEDFEYSVILKHPQFFRLIDAEETRDKYIEIVEKDPNLSICAIERVREIEYRSKGI 896

Query: 179  DAEDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRA 238
            DAED+RFSF+VNFPPGFKIGKY+RIAVWKWQR+PYWSPYED+SGYDLRS+EAQ R+EKRA
Sbjct: 897  DAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYEDISGYDLRSMEAQNRLEKRA 956

Query: 239  VATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVF 298
            VA IHELL+LTVEKKITLERIAHFR  MNLPKKLKEFLLQHQGIFYISTRGN+GKLHTVF
Sbjct: 957  VACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQHQGIFYISTRGNYGKLHTVF 1016

Query: 299  LREAYRKGELLEPNDLYLARRKLGELVLMSPRKVKMDTELV--RNRRDRHD 347
            LREAY++GEL+ PND+YLARR+L ELVLMSPRK K+D ELV  RN  D  D
Sbjct: 1017 LREAYKRGELVVPNDVYLARRRLAELVLMSPRKAKVDAELVSYRNGLDDED 1067

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4490317|emb|CAB38808.1| putative protein [Arabidopsis thaliana] gi|7270298|emb|CAB80067.1| putative protein [Arabidopsis thaliana]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 266/344 (77%), Positives = 310/344 (90%), Gaps = 2/344 (0%)

Query: 1    MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVG--FKRQEAGSFLLKFPHVFEIY 58
            ME+EKK+RKV+KF +L LSQ N T+ +S LD LARR+G  FK+ E G+FLLKFPHVFEIY
Sbjct: 713  MEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARRLGLGFKQHEPGAFLLKFPHVFEIY 772

Query: 59   EHPVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIART 118
            EHPVQRILYCRLTRKAL QI  E +A+  QIP+AVTRLRKL+MMSN+G +RLEHVRIART
Sbjct: 773  EHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDAVTRLRKLVMMSNTGRIRLEHVRIART 832

Query: 119  EFGLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCAIEKVREKEYRERGI 178
            EFGLPEDFEYSV+LK+ QFFRL + +E+ +KYIE+V +DP+L++CAIE+VRE EYR +GI
Sbjct: 833  EFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPNLSICAIERVREIEYRTKGI 892

Query: 179  DAEDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRA 238
            DAED+RFSF+VNFPPGFKIGKY+RIAVWKWQR+PYWSPYED+SGYDLRS+EAQ R+EKR+
Sbjct: 893  DAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYEDISGYDLRSMEAQNRLEKRS 952

Query: 239  VATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVF 298
            VA IHELL+LTVEKKITLERIAHFR  MNLPKKLKEFLLQHQGIFYISTRGN+GKLHTVF
Sbjct: 953  VACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQHQGIFYISTRGNYGKLHTVF 1012

Query: 299  LREAYRKGELLEPNDLYLARRKLGELVLMSPRKVKMDTELVRNR 342
            LRE Y++GEL+EPND+YLARR+L ELVLMSPRK K+D ELVR R
Sbjct: 1013 LREGYKRGELVEPNDVYLARRRLAELVLMSPRKAKVDAELVRYR 1056

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329123|ref|NP_680759.1| Ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] gi|51850389|dbj|BAD42412.1| plant-specific family protein RPD1 [Arabidopsis thaliana] gi|332660835|gb|AEE86235.1| Ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 266/344 (77%), Positives = 310/344 (90%), Gaps = 2/344 (0%)

Query: 1   MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVG--FKRQEAGSFLLKFPHVFEIY 58
           ME+EKK+RKV+KF +L LSQ N T+ +S LD LARR+G  FK+ E G+FLLKFPHVFEIY
Sbjct: 56  MEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARRLGLGFKQHEPGAFLLKFPHVFEIY 115

Query: 59  EHPVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIART 118
           EHPVQRILYCRLTRKAL QI  E +A+  QIP+AVTRLRKL+MMSN+G +RLEHVRIART
Sbjct: 116 EHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDAVTRLRKLVMMSNTGRIRLEHVRIART 175

Query: 119 EFGLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCAIEKVREKEYRERGI 178
           EFGLPEDFEYSV+LK+ QFFRL + +E+ +KYIE+V +DP+L++CAIE+VRE EYR +GI
Sbjct: 176 EFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPNLSICAIERVREIEYRTKGI 235

Query: 179 DAEDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRA 238
           DAED+RFSF+VNFPPGFKIGKY+RIAVWKWQR+PYWSPYED+SGYDLRS+EAQ R+EKR+
Sbjct: 236 DAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYEDISGYDLRSMEAQNRLEKRS 295

Query: 239 VATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVF 298
           VA IHELL+LTVEKKITLERIAHFR  MNLPKKLKEFLLQHQGIFYISTRGN+GKLHTVF
Sbjct: 296 VACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQHQGIFYISTRGNYGKLHTVF 355

Query: 299 LREAYRKGELLEPNDLYLARRKLGELVLMSPRKVKMDTELVRNR 342
           LRE Y++GEL+EPND+YLARR+L ELVLMSPRK K+D ELVR R
Sbjct: 356 LREGYKRGELVEPNDVYLARRRLAELVLMSPRKAKVDAELVRYR 399

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26452650|dbj|BAC43408.1| unknown protein [Arabidopsis thaliana]

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 265/344 (77%), Positives = 309/344 (89%), Gaps = 2/344 (0%)

Query: 1   MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVG--FKRQEAGSFLLKFPHVFEIY 58
           ME+EKK+RKV+KF +L LSQ N T+ +S LD LARR+G  FK+ E G+FLLKFPHVFEIY
Sbjct: 1   MEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARRLGLGFKQHEPGAFLLKFPHVFEIY 60

Query: 59  EHPVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIART 118
           EHPVQRILYCRLTRKAL QI  E +A+  QIP+AVTRLRKL+MMSN+G +RLEHVRIART
Sbjct: 61  EHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDAVTRLRKLVMMSNTGRIRLEHVRIART 120

Query: 119 EFGLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCAIEKVREKEYRERGI 178
           EFGLPEDFEYSV+LK+ QFFRL + +E+ +KYIE+V +DP+L++CAIE+VRE EYR +GI
Sbjct: 121 EFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPNLSICAIERVREIEYRTKGI 180

Query: 179 DAEDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRA 238
            AED+RFSF+VNFPPGFKIGKY+RIAVWKWQR+PYWSPYED+SGYDLRS+EAQ R+EKR+
Sbjct: 181 GAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYEDISGYDLRSMEAQNRLEKRS 240

Query: 239 VATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVF 298
           VA IHELL+LTVEKKITLERIAHFR  MNLPKKLKEFLLQHQGIFYISTRGN+GKLHTVF
Sbjct: 241 VACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQHQGIFYISTRGNYGKLHTVF 300

Query: 299 LREAYRKGELLEPNDLYLARRKLGELVLMSPRKVKMDTELVRNR 342
           LRE Y++GEL+EPND+YLARR+L ELVLMSPRK K+D ELVR R
Sbjct: 301 LREGYKRGELVEPNDVYLARRRLAELVLMSPRKAKVDAELVRYR 344

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125526862|gb|EAY74976.1| hypothetical protein OsI_02874 [Oryza sativa Indica Group]

 Score =  367 bits (943), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 196/410 (47%), Positives = 272/410 (66%), Gaps = 30/410 (7%)

Query: 1   MEIEKKMRKVLKFQTLFL-----------SQHNQTLPVSRLDFLARR-VGFKRQEAGSFL 48
           ME++K++R+ L   +L L                ++P SRL  LARR +     +AG FL
Sbjct: 271 MEVQKRVRRFLALHSLLLYAAAPTALAGGGGGAVSVPFSRLGALARRQLRLAPLDAGRFL 330

Query: 49  LKFPHVFEIYEHPVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGC- 107
           L+ PH F ++ HPV R+L+ RLT +A+  +  E  A+ + +P ++ R+RKLL+++     
Sbjct: 331 LRHPHAFHLFLHPVHRVLHARLTPRAVAALRLEADAVASSLPASIVRIRKLLLLAPPHHR 390

Query: 108 LRLEHVRIARTEFGLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRD---PSLAVCA 164
           LRLEH+R+ R + GLP+DF  S++  +   FRL     + ++++E V      P L+V A
Sbjct: 391 LRLEHIRLLRRDLGLPDDFAESIIQAHPALFRL-----TPDQFVEFVPSPSDPPGLSVAA 445

Query: 165 IEKVREKEYRER---GIDAEDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVS 221
           +E+ RE+ YRE    G   ED+RF+F   FPPGFKIGKY+RIAVWKWQR+PY SPY DVS
Sbjct: 446 VERAREQHYREHRNPGAGEEDVRFAFPTRFPPGFKIGKYFRIAVWKWQRLPYASPYADVS 505

Query: 222 GYDLRSLEAQKRMEKRAVATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQG 281
           G+DLRSLEA++RMEKRAVA +HELL+LTVEK+ TLER+A FR A+ +PKK+KEFLL++QG
Sbjct: 506 GHDLRSLEARRRMEKRAVAAVHELLSLTVEKRTTLERLALFRDALGVPKKIKEFLLKYQG 565

Query: 282 IFYISTRGNHGKLHTVFLREAYRKGELLEPNDLYLARRKLGELVLMSPRKVKMDTELVRN 341
           IFYISTRGN GKLHTVFLREAY KGEL+EPN++Y ARRKL EL++++P+K  +D      
Sbjct: 566 IFYISTRGNQGKLHTVFLREAYYKGELVEPNEIYAARRKLEELLMLNPQKANLDRMFTSM 625

Query: 342 RRDRHD-GGGYMGRST-----VVHANNGFDNFGVKENAGGDQKGDADLDS 385
            R   + GGG  G +      +  A++   N  V    GGD   D+ ++S
Sbjct: 626 GRGWDELGGGRRGGAELREEFLGEASDRRTNTKVDGEYGGDSGDDSGVES 675

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
TAIR|locus:504955534	409	RPD1 "ROOT PRIMORDIUM DEFECTIV	0.820	0.836	0.773	2.8e-144
TAIR|locus:2009230	390	AT1G06440 [Arabidopsis thalian	0.772	0.825	0.404	3.3e-56
TAIR|locus:4515103321	528	WTF1 "what's this factor?" [Ar	0.918	0.725	0.310	1.6e-38
TAIR|locus:2042561	415	AT2G31290 [Arabidopsis thalian	0.702	0.706	0.333	2e-33
TAIR|locus:2207380	413	AT1G79120 [Arabidopsis thalian	0.762	0.769	0.307	4.1e-33
TAIR|locus:2012981	470	AT1G71850 "AT1G71850" [Arabido	0.918	0.814	0.276	4.2e-31
TAIR|locus:2166305	494	emb1692 "embryo defective 1692	0.889	0.751	0.287	8.6e-26
TAIR|locus:2064940	387	WTF9 "AT2G39120" [Arabidopsis	0.741	0.798	0.283	1.2e-23
TAIR|locus:2138738	395	AT4G08940 [Arabidopsis thalian	0.659	0.696	0.294	2.2e-18

TAIR|locus:504955534 RPD1 "ROOT PRIMORDIUM DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1410 (501.4 bits), Expect = 2.8e-144, P = 2.8e-144
 Identities = 266/344 (77%), Positives = 310/344 (90%)

Query:     1 MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVG--FKRQEAGSFLLKFPHVFEIY 58
             ME+EKK+RKV+KF +L LSQ N T+ +S LD LARR+G  FK+ E G+FLLKFPHVFEIY
Sbjct:    56 MEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARRLGLGFKQHEPGAFLLKFPHVFEIY 115

Query:    59 EHPVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIART 118
             EHPVQRILYCRLTRKAL QI  E +A+  QIP+AVTRLRKL+MMSN+G +RLEHVRIART
Sbjct:   116 EHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDAVTRLRKLVMMSNTGRIRLEHVRIART 175

Query:   119 EFGLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCAIEKVREKEYRERGI 178
             EFGLPEDFEYSV+LK+ QFFRL + +E+ +KYIE+V +DP+L++CAIE+VRE EYR +GI
Sbjct:   176 EFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPNLSICAIERVREIEYRTKGI 235

Query:   179 DAEDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRA 238
             DAED+RFSF+VNFPPGFKIGKY+RIAVWKWQR+PYWSPYED+SGYDLRS+EAQ R+EKR+
Sbjct:   236 DAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYEDISGYDLRSMEAQNRLEKRS 295

Query:   239 VATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVF 298
             VA IHELL+LTVEKKITLERIAHFR  MNLPKKLKEFLLQHQGIFYISTRGN+GKLHTVF
Sbjct:   296 VACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQHQGIFYISTRGNYGKLHTVF 355

Query:   299 LREAYRKGELLEPNDLYLARRKLGELVLMSPRKVKMDTELVRNR 342
             LRE Y++GEL+EPND+YLARR+L ELVLMSPRK K+D ELVR R
Sbjct:   356 LREGYKRGELVEPNDVYLARRRLAELVLMSPRKAKVDAELVRYR 399

GO:0009507 "chloroplast" evidence=ISM

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

TAIR|locus:2009230 AT1G06440 [Arabidopsis thaliana (taxid:3702)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 135/334 (40%), Positives = 193/334 (57%)

Query:     1 MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLAR---RVGFKRQEAGSFLLKFPHVFEI 57
             M+  K + KV+  Q L L+      P   ++FL+R   ++   R  A SFL K+PH+F +
Sbjct:    44 MDKYKNLLKVIAIQDLTLANPTADPPSLSIEFLSRLSQKLHLNRG-AASFLRKYPHIFHV 102

Query:    58 YEHPVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIAR 117
                PV+   +CRLT  A+    QE  A+ A +   V RL +LL MS S  + L  V    
Sbjct:   103 LYDPVKAEPFCRLTDVAMEISRQEALAITATLSLVVDRLVRLLSMSISKSIPLRAVFKVW 162

Query:   118 TEFGLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAV--CAIEKVREKEYRE 175
              E GLP+DFE SV+ KN   F+L +  ES    +ELV  +        A+EK R  E  +
Sbjct:   163 RELGLPDDFEDSVISKNPHLFKLSDGHESNTHILELVQEEEKRLEFEAAVEKWRVVECSK 222

Query:   176 R--GIDAEDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKR 233
                 +D  +I+FSF  ++PPG ++ K ++  V +WQR+PY  PYED+ G   +S      
Sbjct:   223 EDCSVDRTEIQFSFKHSYPPGMRLSKTFKAKVKEWQRLPYVGPYEDMVGKK-KSRSGVMG 281

Query:   234 MEKRAVATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGK 293
             +EKRAVA  HE L LTVEK + +E+I+HFR    +   +++  L H G+FY+ST+G   K
Sbjct:   282 IEKRAVAIAHEFLNLTVEKMVEVEKISHFRKCFGIDLNIRDLFLDHPGMFYVSTKG---K 338

Query:   294 LHTVFLREAYRKGELLEPNDLYLARRKLGELVLM 327
              HTVFLREAY +G L++PN +Y ARRKL +LVL+
Sbjct:   339 RHTVFLREAYERGRLIDPNPVYDARRKLLDLVLL 372

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:4515103321 WTF1 "what's this factor?" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 129/416 (31%), Positives = 203/416 (48%)

Query:     4 EKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEAGSFLL-KFPHVFEIYEHPV 62
             +KK++ VL  + + +SQ ++ + +  L    R +G K++     LL K+P VFEI E   
Sbjct:    91 DKKLKLVLNIRKILVSQPDRMMSLRGLGKYRRDLGLKKRRRFIALLRKYPGVFEIVEEGA 150

Query:    63 QRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEFGL 122
               + + ++T +A      E +  N      V +LRKL+MMS    + LE +   +T+ GL
Sbjct:   151 YSLRF-KMTSEAERLYLDEMRIRNELEDVLVVKLRKLVMMSIDKRILLEKISHLKTDLGL 209

Query:   123 PEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCAIE------KVREKEYRER 176
             P +F  ++  +  Q+FR+          +EL   DP LAV A E      + RE E R  
Sbjct:   210 PLEFRDTICQRYPQYFRVVPTPRGPA--LELTHWDPELAVSAAELSEDDNRTRESEERNL 267

Query:   177 GIDAEDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEK 236
              ID    +F+  V  P G  + K     + +++ + Y SPY+D S   LRS   +K  EK
Sbjct:   268 IIDRPP-KFN-RVKLPRGLNLSKSETRKISQFRDMQYISPYKDFS--HLRSGTLEK--EK 321

Query:   237 RAVATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHT 296
              A   IHELL+LT EK+  ++ + HFR      ++L+  L++H  +FY+S +G      +
Sbjct:   322 HACGVIHELLSLTTEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDLFYVSLKGERD---S 378

Query:   297 VFLREAYRKGELLEPNDLYLARRKLGELVLMS--PRK--VKMDTELVRNRRDRHDGGGYM 352
             VFLREAYR  EL++ + L L + K+  LV +   PR+   + D E    R    DG    
Sbjct:   379 VFLREAYRNSELIDKDPLTLVKEKMRALVSVPRFPRRGGPRKDEE---GREVEIDGSDAD 435

Query:   353 GRSTVVHAN----NGFDNFGVKENAGGDQKGDADLDS---DLGSNVESDTSDENDD 401
             G      ++    +  D +   E+ G D  GD   D    D+  N + D  DE +D
Sbjct:   436 GEEEEEESDAEEWSDVDGYLEGEDGGNDDDGDWTDDEGEEDVPPNFDDDDEDEEED 491

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2042561 AT2G31290 [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 105/315 (33%), Positives = 159/315 (50%)

Query:    67 YCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEFGLPEDF 126
             YCRLT+  +  +E+E+   + Q P    RL KLLM+S +  L +  +   +  FG P+D+
Sbjct:   101 YCRLTKPMMTLVEEEELVKDTQEPVLADRLAKLLMLSVNQRLNVVKLNEFKRSFGFPDDY 160

Query:   127 EYSVVLKNAQFFRLFN-AKESTEKYIELVGRDPSLAVCAIEKVREKEYRERGIDAEDIRF 185
                +V K +  FRL N +   +   IEL+   P LAV A+E   +K        +E    
Sbjct:   161 VIRIVPKYSDVFRLVNYSGRKSSMEIELLLWKPELAVSAVEAAAKK------CGSEP--- 211

Query:   186 SFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRAVATIHEL 245
             SF  + P  +    + R    ++   PY SPYED  G DL  +E  K  EKR+V  +HEL
Sbjct:   212 SFSCSLPSTWT-KPWERFM--EFNAFPYISPYED-HG-DL--VEGSKESEKRSVGLVHEL 264

Query:   246 LTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVFLREAYRK 305
             L+LT+ KK+++ +++HF+    LP+KL   LL+H GIFY+   GN  ++HTV LRE Y  
Sbjct:   265 LSLTLWKKLSIVKLSHFKREFGLPEKLNGMLLKHPGIFYV---GNKYQVHTVILREGYNG 321

Query:   306 GELLEPNDLYLARRKLGELVLMSPRKVKMDTELVRNRRDRHDGGGYMGRSTVVHANNGFD 365
              EL+  + L + + K GEL+     +      L    + R  G   + +  V   +   D
Sbjct:   322 SELIHKDPLVVVKDKFGELMQQGLYEYNHRRYLANLEKKREKGIESL-KPVVRKKDRNHD 380

Query:   366 NFGVKENAG-GDQKG 379
                V E    GD+ G
Sbjct:   381 RDDVDEEENHGDRPG 395

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2207380 AT1G79120 [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 109/355 (30%), Positives = 182/355 (51%)

Query:     1 MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQ-EAGSFLLKFPHVFEI-- 57
             +++ KK   +L+ +++  +Q + +L +  L+   + VGF  +    + + K+P +F +  
Sbjct:    72 IDLNKKPSLILQLKSIIQAQKHGSLLLRDLE---KHVGFVHKWNLMAAIEKYPTIFYVGG 128

Query:    58 -YEHPVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIA 116
              ++ P     +  LT KA     +E +A  +  P  V  LRKLLMMS    + LE V   
Sbjct:   129 GHKEPP----FVMLTEKAKKIAAEESEATESMEPILVNNLRKLLMMSVDCRVPLEKVEFI 184

Query:   117 RTEFGLPEDFEYSVVLKNAQFFRL--FNAKESTEKYIELVGRDPSLAVCAIEKVREKE-Y 173
             ++  GLP+DF+ +++ K  +FF L   N K +    + L   D SLA+ A E    +E +
Sbjct:   185 QSAMGLPQDFKSTLIPKYTEFFSLKVINGKVN----LVLENWDSSLAITAREDRLSREGF 240

Query:   174 RERGIDAEDIRFS----------FLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGY 223
              E   D + +R +          F ++FPPGF+    Y     KWQ++ + SPY +   +
Sbjct:   241 SESVGDRKRVRITKDGNFLGRNAFKISFPPGFRPNASYLEEFEKWQKMEFPSPYLNARRF 300

Query:   224 DLRSLEAQKRMEKRAVATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIF 283
             D     A  +  KR VA +HELL+LT+EK++T  ++  F     LP +L   L++HQGIF
Sbjct:   301 DA----ADPKARKRVVAVLHELLSLTMEKRVTCAQLDAFHSEYLLPSRLILCLIKHQGIF 356

Query:   284 YISTRGNHGKLHTVFLREAYRKGELLEPNDLYLARRKLGELVLMSPRKVKMDTEL 338
             YI+ +G  G   TVFL++AY    L+E   L L   +   + L   ++V +  E+
Sbjct:   357 YITNKGARG---TVFLKDAYAGSNLIEKCPLLLFHDRF--VALCGRKEVNLSNEM 406

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2012981 AT1G71850 "AT1G71850" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 113/408 (27%), Positives = 195/408 (47%)

Query:     1 MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFL--ARRVGFKRQEAGSFLLKFPHVF-EI 57
             +E EK +R +L  + L  S+  +++P+S +     + RV  +  E   F+  FP VF E 
Sbjct:    41 VEREKNLRPLLSIKDLIRSEPAKSVPISVITSQKDSLRVPLRPIE---FIRSFPSVFQEF 97

Query:    58 YEHPVQRILYCRLTRKALLQIEQEKKALNAQIPEA--VTRLRKLLMMSNSGCLRLEHVRI 115
                 +    +  LT + L     E+    ++  +     RL KLLM++    + LE + +
Sbjct:    98 LPGGIGIHPHISLTPEILNHDADEQLVYGSETYKQGLADRLLKLLMINRINKIPLEILDL 157

Query:   116 ARTEFGLPEDFEYSVVLKNAQFFRLFNAK-ESTEKYIELVGRDPSLAVCAIEKVREKEYR 174
              + + GLP+D+  ++V +   +FR+  +K       +ELV      AV  +EK + +  R
Sbjct:   158 LKWDLGLPKDYVETMVPEFPDYFRVIKSKLRGCSGELELVCWSNEHAVSVLEK-KARTLR 216

Query:   175 ERGIDAEDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRM 234
              +G   +    +F + F  GF + K  +  +  WQ++PY SPYE+       S E+    
Sbjct:   217 -KGEYTKGSAIAFPMKFSNGFVVDKKMKKWIDDWQKLPYISPYENALHLSATSDES---- 271

Query:   235 EKRAVATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKL 294
             +K A A +HE++ L V KK+  + I H    M L  + K  L  H GIFY+S++    + 
Sbjct:   272 DKWAAAVLHEIMNLFVSKKVEKDAILHLGEFMGLRSRFKRVLHNHPGIFYLSSKL---RT 328

Query:   295 HTVFLREAYRKGELLEPNDLYLARRKLGELVLMSPRKVKMDTELVRNRRDRHDGGGYMGR 354
             HTV LR+ Y++G L+E N+L  +R +  +L+      VK D + V +   + D G   G 
Sbjct:   329 HTVVLRDGYKRGMLIESNELVTSRNRYMKLM----NTVKKDNKAVSSSSKKEDKGKVEGE 384

Query:   355 --STVVHA-NNGFDNFGVKENAGGDQKGDADLDSDLGSNVESDTSDEN 399
                T   A N+      V+++  GD   D + D ++  N + +    N
Sbjct:   385 VCDTDAKAENDDISGSDVEDDRQGDFVDDDEDDDEVDQNQDLERGRRN 432

GO:0005739 "mitochondrion" evidence=IDA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR|locus:2166305 emb1692 "embryo defective 1692" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 8.6e-26, P = 8.6e-26
 Identities = 120/418 (28%), Positives = 201/418 (48%)

Query:     4 EKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEAG-SFLLKFPHVFEIYEHPV 62
             + ++R V K  TL LS+    +P+  L      +  +   A  S + ++P +FE++  P 
Sbjct:    72 QNRVRFVQKLNTLLLSKPKHYIPIEILYKCRSYLCIENPLAILSMIRRYPTIFELFTTPT 131

Query:    63 QRI----------LYCRLTRKALLQIEQEKKALNAQIPEAV-TRLRKLLMMSNSGCLRLE 111
               +          L  RLT  A     QE   L ++I + + T+L+KLLM+S+   L L 
Sbjct:   132 PHLPMNATKPLSQLCVRLTSAASSLAMQELN-LKSEISDKLATKLQKLLMLSSHRRLLLS 190

Query:   112 H-VRIARTEFGLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCAIEKVRE 170
               V IA  +FG P +F   +       F+  +   S  + +ELV  DP LA     ++  
Sbjct:   191 KLVHIA-PDFGFPPNFRSRLCNDYPDKFKTVDT--SYGRALELVSSDPELA----NQMPS 243

Query:   171 KEYRERGIDAE-DIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGY-DLRSL 228
              E  +RG+  +  ++F  L N   G  + + ++  + K++  P   PY+  S Y    S+
Sbjct:   244 PEV-DRGLIVDRPLKFKRL-NLRRGLNLKRRHQGFLIKFRESPDVCPYKMSSDYLASESI 301

Query:   229 EAQKRMEKRAVATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTR 288
             EA    EKRA A + E+L LTVEK+  ++ + HFR   +LP KL++ +++H  +FY+S +
Sbjct:   302 EA----EKRACAVVREVLGLTVEKRTLIDHLTHFRKEFSLPNKLRDLIVRHPELFYVSIK 357

Query:   289 GNHGKLHTVFLREAYR-KGELLEPNDLYLARRKLGELVLMSPRKVKMDTELVRNRRDRHD 347
             G      +VFL EAY   G+LL+ ++  + R +L +L+           E  R RR+R  
Sbjct:   358 GMRD---SVFLVEAYNDNGDLLDKDERLVIRERLIDLI----------QEGKRIRRERRR 404

Query:   348 GGGYMGRSTVVHANNGFDNFGVKENAGGDQKGDA--DL-DS-DLGSNVESDTSDENDD 401
              G  +G  +V       +     ++   D+  D   +L DS DLG     D  D++D+
Sbjct:   405 KGATLGDKSVEEKRKDDETIDDYDSDLDDEYEDGFENLFDSEDLGVEYHFDEEDDDDE 462

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2064940 WTF9 "AT2G39120" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 95/335 (28%), Positives = 159/335 (47%)

Query:     6 KMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEAGSFLLKFPHVFEIYEHPVQRI 65
             +++ V+  +   + + N+ +P+S +    R+     + A  FL KFP +FE +  P   +
Sbjct:    48 QLKSVVSLKNCIVQEPNRCIPISAISKKTRQFDVSTKIA-HFLRKFPSIFEEFVGPEYNL 106

Query:    66 LYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEFGLPED 125
              + RLT +A     QE+        +   RL+KL++MS    L L  V+  +   GLP+D
Sbjct:   107 PWFRLTPEATELDRQERVVYQTSADDLRDRLKKLILMSKDNVLPLSIVQGMKWYLGLPDD 166

Query:   126 FEYSVVLKNAQFFRLFNAKESTEKY-IELVGRDPSLAVCAIEKVREKEYRERGIDAEDIR 184
             +     +     FR  + ++  +   ++  G D  L+V  ++K   K+ R   +  E+I 
Sbjct:   167 YLQFPDMNLDSSFRFVDMEDGVKGLAVDYNGGDKVLSV--LQKNAMKKRRGE-VSLEEIE 223

Query:   185 FSFLVNFPP-GFKIGKYYRIAVW--KWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRAVAT 241
             F     FP  G ++    +I  W  ++Q++PY SPY+D S  D  S  A    EKR V  
Sbjct:   224 FPL---FPSKGCRLR--VKIEDWLMEFQKLPYVSPYDDYSCLDPSSDIA----EKRVVGF 274

Query:   242 IHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVFLRE 301
             +HELL L VE     +++   +    LP+K+ +   +H  IFY+S +    K  T  LRE
Sbjct:   275 LHELLCLFVEHSAERKKLLCLKKHFGLPQKVHKAFERHPQIFYLSMKN---KTCTAILRE 331

Query:   302 AYRKGELLEPNDL------YLARRKLGELVLMSPR 330
              YR    +E + +      Y+   K  EL+L S R
Sbjct:   332 PYRDKASVETHPVLGVRKKYIQLMKNSELILKSRR 366

GO:0005739 "mitochondrion" evidence=IDA

GO:0000373 "Group II intron splicing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

GO:0017004 "cytochrome complex assembly" evidence=IMP

TAIR|locus:2138738 AT4G08940 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 90/306 (29%), Positives = 145/306 (47%)

Query:    17 FLS-QHNQTLPVSRLDFLARRVGFKR-QEAGSFLLKFPHVFEIYEHPVQRILYCRLTRKA 74
             F+S Q  + L +     L R +GF R ++   F+ K P +F+ Y H   +I +   T   
Sbjct:    90 FISKQPERILRLDDAGKLYRELGFPRGRKVTKFIPKHPLIFQTYRHSDGKI-WLGFTEFM 148

Query:    75 LLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEFGLPEDFEYSVVLKN 134
                +++EK  + +   + V  +RKLLMM+    + L  +   R  FG+PEDF   V  K 
Sbjct:   149 EDLLDEEKGLMESMELDRVNCVRKLLMMTKDKRILLSKIHHTRLLFGIPEDFRDRVA-KY 207

Query:   135 AQFFRLFNAKESTEKYIELVGRDPSLAVCAIEKVREKEYRERGIDAEDIRFSFLVNFPPG 194
               +FR+    +   + +ELV  D +LAV  +E++         ID +  +  F   FP  
Sbjct:   208 PDYFRVVTGGDGN-RVLELVNWDTNLAVSELERLFM-------IDEDKAKRVF--KFP-- 255

Query:   195 FKIGKYYRIAVWKWQRV------PYWSPYEDVSGYDLRSLEAQKRMEKRAVATIHELLTL 248
              K GK   +     +++      P  SPY D    D+ SLEA    EK  V  +HE L L
Sbjct:   256 VKHGKELELEEKDTRKLNLLNTFPLVSPYSDGWKLDVWSLEA----EKYRVGIVHEFLNL 311

Query:   249 TVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYIS-TRGNHGKLHTVFLREAYRKGE 307
             T+EK+ ++  I  F+   +L ++  + L +    FY++ T  N     TVFL++AY +  
Sbjct:   312 TLEKRASIHHIVEFKDEFSLTRQTYQMLKKQSMSFYLAGTEMNW----TVFLKDAYDENG 367

Query:   308 LLEPND 313
             +L   D
Sbjct:   368 VLVSKD 373


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      417       417   0.00082  118 3  11 22  0.37    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  250 KB (2135 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  36.39u 0.17s 36.56t   Elapsed:  00:00:02
  Total cpu time:  36.39u 0.17s 36.56t   Elapsed:  00:00:02
  Start:  Tue May 21 04:05:34 2013   End:  Tue May 21 04:05:36 2013

GO:0009507 "chloroplast" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0015824 "proline transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	LOW CONFIDENCE prediction!
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	417
pfam11955	332	pfam11955, PORR, Plant organelle RNA recognition d	1e-129

>gnl|CDD|221338 pfam11955, PORR, Plant organelle RNA recognition domain

 Score =  375 bits (964), Expect = e-129
 Identities = 159/334 (47%), Positives = 211/334 (63%), Gaps = 12/334 (3%)

Query: 1   MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEAGSFLLKFPHVFEIYEH 60
           +E EK++R VL+ + L LSQ + +LP+  L  L R++G  R  A +FL K+P +FE++ H
Sbjct: 11  VEREKRLRLVLRLKDLLLSQPDHSLPLRDLSKLRRQLGLPR-GALAFLRKYPSIFELFRH 69

Query: 61  PVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEF 120
           P   +L  RLT KA   + +E + L +  P+ V RLRKLLMMS    L LE +   R + 
Sbjct: 70  PSDSVLCVRLTPKAEDLLAEEARLLESSEPDLVDRLRKLLMMSKDRRLPLEKLAHLRRDL 129

Query: 121 GLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSLAVCAIEKVREKEYRERGIDA 180
           GLP+DF  S+V K   +FRL    E     +ELV  DP LAV A+EK RE E   RG D 
Sbjct: 130 GLPDDFRDSLVPKYPDYFRL--VDEDGGDGLELVSWDPELAVSALEKRREIED--RGGDR 185

Query: 181 EDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRAVA 240
            D RF+F V FPPGFK+ K +R  + +WQ++PY SPYED S  D          EKRAVA
Sbjct: 186 VDRRFAFPVKFPPGFKLRKKFREKLEEWQKLPYISPYEDASHLD----PGSDEAEKRAVA 241

Query: 241 TIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVFLR 300
            +HELL+LTVEK+  ++ + HFR    LP+KL++ LL+H GIFY+ST+   GK HTVFLR
Sbjct: 242 VLHELLSLTVEKRTEVDHLTHFRKEFGLPQKLRKVLLRHPGIFYLSTK---GKRHTVFLR 298

Query: 301 EAYRKGELLEPNDLYLARRKLGELVLMSPRKVKM 334
           EAY +GEL+E + L LAR KL EL+L   R+ K 
Sbjct: 299 EAYDRGELVEKDPLVLAREKLLELMLEGKRERKR 332

This family, which was previously known as DUF860, has been shown to be a component of group II intron ribonucleoprotein particles in maize chloroplasts. The domain is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. All of the members are predicted to localise to mitochondria or chloroplasts. It seems likely that most PORR proteins function in organellar RNA metabolism. Length = 332

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	417
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	100.0
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	99.46
PLN03196	487	MOC1-like protein; Provisional	91.92
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	81.96

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=100.00  E-value=6.1e-111  Score=840.74  Aligned_cols=325  Identities=45%  Similarity=0.739  Sum_probs=310.0

Q ss_pred             ChhhhhhHHHHHHHHHHhcCCCCccchhhHHhhcccCCCCcchhhhHhhhCCCCeEEeccCccccccccCCHHHHHHHHH
Q 044314            1 MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEAGSFLLKFPHVFEIYEHPVQRILYCRLTRKALLQIEQ   80 (417)
Q Consensus         1 ~e~ek~lk~vl~Lk~lI~s~P~~~lpl~~l~k~~~~Lgl~~~~~~~FLrkyP~iF~vf~~p~~~~~~~rLT~~a~~L~~e   80 (417)
                      |+++|++++|++|+++|+++|+++||++.|++++++|||+..++++||+|||+||++|.||..+++||+||++|++|++|
T Consensus        11 i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~e   90 (335)
T PF11955_consen   11 IEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLRE   90 (335)
T ss_pred             HHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHH
Confidence            68999999999999999999999999999999999999965679999999999999999999999999999999999999


Q ss_pred             HHHHHHhcchHHHHHHHHHhhcCCCceeeHHHHHHHHHhcCCCccchhhhhhcCCCceEEeecCCCCcceEEEeecCCCc
Q 044314           81 EKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEFGLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSL  160 (417)
Q Consensus        81 E~~~~~~~e~~~v~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~slv~kyP~~Frvv~~~~~~~~~LeLv~Wdp~L  160 (417)
                      |.++++++++++|++|+||||||.+++|||++|+|++||||||+||++++|++||++|++|+..+ ++.+||||+|||+|
T Consensus        91 E~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~-~~~~LeLv~Wd~~L  169 (335)
T PF11955_consen   91 ERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLED-GGRYLELVSWDPEL  169 (335)
T ss_pred             HHHHHHhChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecCC-CCCEEEEeecCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999443 46899999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCccCcccceeeeCCCCCccchhHHHHHHhhhcCCCCCCCCCcCCCCCCCHHHHHhhhHHHHH
Q 044314          161 AVCAIEKVREKEYRERGIDAEDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRAVA  240 (417)
Q Consensus       161 AVS~lEk~~~~e~~~~g~~~~~~~~~F~~~fP~Gf~l~k~~r~~l~~fQ~LPyiSPYed~~~ld~~S~e~~~~~EKRaVa  240 (417)
                      |||++|++++.+++..+......+++|||+||+||++++++++|+++||+|||+|||+|+++++++|++    +||||||
T Consensus       170 Avs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~----~EKRaVa  245 (335)
T PF11955_consen  170 AVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDE----AEKRAVA  245 (335)
T ss_pred             CcCccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChH----HHhHHHH
Confidence            999999999876555555555678999999999999999999999999999999999999999999986    5999999


Q ss_pred             HHHHHhhccchhhccHHHHHHHHHhcCCcHHHHHHHhhcCCceEEEeeCCCCceeEEEEeeecCCCCccCCChHHHHHHH
Q 044314          241 TIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVFLREAYRKGELLEPNDLYLARRK  320 (417)
Q Consensus       241 VlHELLSLTveKr~~v~~L~hfr~efgLP~k~~~~L~rHPgIFYvS~Kgn~~k~~TVfLREAY~~g~Liek~Pl~~~R~K  320 (417)
                      |+||||||||||||++++|+|||++||||++++++|+|||||||||+||   +|+||||||||++|+|||||||+.+|+|
T Consensus       246 VlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~kg---~~~TVfLrEAY~~~~Liek~Pl~~~r~k  322 (335)
T PF11955_consen  246 VLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIFYVSLKG---KRHTVFLREAYDGGELIEKHPLVVIREK  322 (335)
T ss_pred             HHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeEEEeccC---CceEEEEeeccCCCCCCCCCchHHHHHH
Confidence            9999999999999999999999999999999999999999999999996   7999999999999999999999999999


Q ss_pred             HHHHHhcCccccc
Q 044314          321 LGELVLMSPRKVK  333 (417)
Q Consensus       321 ~~~L~~~~~r~~~  333 (417)
                      |++||.+|+++++
T Consensus       323 ~~~Lm~~~~~~~~  335 (335)
T PF11955_consen  323 FLELMQEGRRKRN  335 (335)
T ss_pred             HHHHHhhcccccC
Confidence            9999999998864

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=99.46  E-value=9.7e-13  Score=133.02  Aligned_cols=143  Identities=25%  Similarity=0.404  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHhcchHHHHHHHHHhhcCCCceeeHHHHHHHHHhcCCCccchhhhhhcCCCceEEeecCCCCcceEEEee
Q 044314           76 LQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEFGLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVG  155 (417)
Q Consensus        76 ~L~~eE~~~~~~~e~~~v~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~slv~kyP~~Frvv~~~~~~~~~LeLv~  155 (417)
                      .+++.|+.+.      .|.+|+.+|.-++++.|||+.+..++..|||+.-=..+++.+||..|.+...+..+.+++.|+.
T Consensus         9 ~~i~~~k~l~------~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~   82 (335)
T PF11955_consen    9 KVIEREKRLR------FVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTP   82 (335)
T ss_pred             HHHHhhhhHH------HHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCH
Confidence            3456666666      9999999999999999999999999999999532235899999999999885555677888876


Q ss_pred             cCCCcchhHHHHHHHHHHHHhCCCccCcccceeeeCCCCCccchhHHHHHHhhhcCCCCCCCCCcCCCCCCCHHHHHhhh
Q 044314          156 RDPSLAVCAIEKVREKEYRERGIDAEDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRME  235 (417)
Q Consensus       156 Wdp~LAVS~lEk~~~~e~~~~g~~~~~~~~~F~~~fP~Gf~l~k~~r~~l~~fQ~LPyiSPYed~~~ld~~S~e~~~~~E  235 (417)
                          -|...++   + |                             ..                          +.+.+|
T Consensus        83 ----~a~~L~~---e-E-----------------------------~~--------------------------~~~~~e   99 (335)
T PF11955_consen   83 ----EAEDLLR---E-E-----------------------------RR--------------------------VREEME   99 (335)
T ss_pred             ----HHHHHHH---H-H-----------------------------HH--------------------------HHHhCh
Confidence                2221111   0 0                             00                          011247


Q ss_pred             HHHHHHHHHHhhccchhhccHHHHHHHHHhcCCcHHHHHHHh-hcCCceEEEe
Q 044314          236 KRAVATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLL-QHQGIFYIST  287 (417)
Q Consensus       236 KRaVaVlHELLSLTveKr~~v~~L~hfr~efgLP~k~~~~L~-rHPgIFYvS~  287 (417)
                      .-+|..|+.||+|+..+++++++|.|++++||||.+|...++ +||+.|-|..
T Consensus       100 ~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~  152 (335)
T PF11955_consen  100 PDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVD  152 (335)
T ss_pred             HHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEee
Confidence            789999999999999999999999999999999999999977 9999999986

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>PLN03196 MOC1-like protein; Provisional

Probab=91.92  E-value=0.12  Score=55.36  Aligned_cols=49  Identities=10%  Similarity=0.324  Sum_probs=35.3

Q ss_pred             HHHHHHHHHhhccchhhccHHHHHHHHHhcCCc-HHHHHHHhhcCCceEEEee
Q 044314          237 RAVATIHELLTLTVEKKITLERIAHFRLAMNLP-KKLKEFLLQHQGIFYISTR  288 (417)
Q Consensus       237 RaVaVlHELLSLTveKr~~v~~L~hfr~efgLP-~k~~~~L~rHPgIFYvS~K  288 (417)
                      ++|..+-.+|++..+|  ...++..|++ +|++ +.+..|+.++|.++=.|.+
T Consensus       324 ~~v~k~P~il~lSe~k--l~~kvefL~~-~Gls~edI~~mv~k~P~lL~~S~~  373 (487)
T PLN03196        324 RVIEKLPQIVSLNRNV--ALKHVEFLRG-RGFSAQDVAKMVVRCPQILALNLE  373 (487)
T ss_pred             HHHHhcchhhcccHHH--HHHHHHHHHH-cCCCHHHHHHHHHhCCceeeccHH
Confidence            3455566778877654  3457777775 8998 5667888899999988863

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=81.96  E-value=2.3  Score=42.76  Aligned_cols=8  Identities=25%  Similarity=0.517  Sum_probs=4.6

Q ss_pred             hcCCCceE
Q 044314          132 LKNAQFFR  139 (417)
Q Consensus       132 ~kyP~~Fr  139 (417)
                      -+||..|.
T Consensus        83 vkH~g~~~   90 (314)
T PF06524_consen   83 VKHPGVFT   90 (314)
T ss_pred             EecCceee
Confidence            45666664

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	417
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 59/404 (14%), Positives = 125/404 (30%), Gaps = 102/404 (25%)

Query: 4   EKKMRKVLKFQTLFLSQHNQTLPVSRLDF---LARRVGFKRQEAGSFLLKFPHVFEIYEH 60
             K++  + F+  +L+  N   P + L+    L  ++                     + 
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 61  PVQRILYCRLTRKALLQIE--QEKKALNA-----QIPEAVTRLRKLLMMSNSGCLRLEHV 113
            ++R+L  +     LL +   Q  KA NA     +I    TR +++    ++      H+
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL-LTTRFKQVTDFLSAA--TTTHI 289

Query: 114 RIARTEFGLPEDFEYSVVLKNAQFFRLF-NAKESTEKYIELVGRDPSLAVCAI-EKVRE- 170
            +      L  D       +       + + +       E++  +P   +  I E +R+ 
Sbjct: 290 SLDHHSMTLTPD-------EVKSLLLKYLDCRPQDLP-REVLTTNP-RRLSIIAESIRDG 340

Query: 171 ----KEYRERGIDA--------------EDIR--FSFLVNFPPGFKIGKYYRIAVWKWQR 210
                 ++    D                + R  F  L  FPP   I     +++  W  
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-PTILLSLI-WFD 398

Query: 211 VPYWSPYEDVSGYDLRSLEAQKRMEKRAVATIHELLTLTVEKKITLERIAHFRLAMNLPK 270
           V        V+     SL  +K+ ++  + +I  +               +  L + L  
Sbjct: 399 VIKSDVMVVVNKLHKYSL-VEKQPKESTI-SIPSI---------------YLELKVKLE- 440

Query: 271 KLKEFLLQHQGIFYISTRGNHGKLHTVFLREAYRKGELLEPNDL-------Y-------- 315
                              N   LH   + + Y   +  + +DL       Y        
Sbjct: 441 -------------------NEYALHRSIV-DHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 316 LARRKLGELVLMSPRKVKMDTELVRNRRDRHDGGGYMGRSTVVH 359
           L   +  E + +  R V +D   +  +  RHD   +    ++++
Sbjct: 481 LKNIEHPERMTLF-RMVFLDFRFLEQKI-RHDSTAWNASGSILN 522

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 8e-04
 Identities = 54/366 (14%), Positives = 107/366 (29%), Gaps = 91/366 (24%)

Query: 43  EAGSFLLKFPHVFEIYEHPVQRILYCRLTRKALLQI---EQEKKALNAQIPEAVTRLRKL 99
           E G    ++  +  ++E        C+  +     I   E+    + +   +AV+   +L
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS--KDAVSGTLRL 67

Query: 100 LMMSNSGCLRLEHVRIAR--TEFGLPEDFEY--------------SVVLKNAQFFRLFNA 143
                   L  +   + +   E  L  ++++                 +   Q  RL+N 
Sbjct: 68  F-----WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 144 KESTEKYIELVGRDPSLAVCAIEKVREKEYR---ERGID-------------AEDIR-FS 186
            +   KY   V R          K+R+        + +               +    + 
Sbjct: 123 NQVFAKY--NVSRLQ-----PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 187 FLVNFPPG-F--KIGKYYR-----IAVWK--WQRVPYWSPYEDVS-GYDLRSLEAQKRME 235
                    F   +            + K  +Q  P W+   D S    LR    Q  + 
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 236 KRAVATIHE--LLTL-TVEKKITLERIAHFRLAMNLPKKLKEFLL--QHQGIFYISTRGN 290
           +   +  +E  LL L  V+             A NL  K+   LL  + + +    +   
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWN-------AFNLSCKI---LLTTRFKQVTDFLSAAT 285

Query: 291 HGKLHTVFLREAYRKGELLE---------PNDLYLARRKLGELVLMSPRKVKMDTELVRN 341
              +            E+           P DL    R   E++  +PR++ +  E +R+
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---PR---EVLTTNPRRLSIIAESIRD 339

Query: 342 RRDRHD 347
                D
Sbjct: 340 GLATWD 345

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	417
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	81.62

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=81.62  E-value=0.44  Score=44.85  Aligned_cols=41  Identities=17%  Similarity=0.251  Sum_probs=24.5

Q ss_pred             HHhhcCCCceeeHHHHHHHHHhcCCCccchhhhhhcCCCceEE
Q 044314           98 KLLMMSNSGCLRLEHVRIARTEFGLPEDFEYSVVLKNAQFFRL  140 (417)
Q Consensus        98 KLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~slv~kyP~~Frv  140 (417)
                      .+|.+|.++.  -.++.-+...+|++.+=...++.++|.++..
T Consensus       138 ~il~~s~e~~--~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~  178 (270)
T 3m66_A          138 RLLTGSLEPV--KENMKVYRLELGFKHNEIQHMITRIPKMLTA  178 (270)
T ss_dssp             GGGTSCSHHH--HHHHHHHHHTSCCCHHHHHHHHHHCGGGGTS
T ss_pred             cceeechHHH--HHHHHHHHHHcCCCHHHHHHHHHhCChhhee
Confidence            4555655432  2345545667777776666677777776644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	417
d2icga1	158	d.369.1.1 (A:1-158) Uncharacterized protein Lin291	0.004

>d2icga1 d.369.1.1 (A:1-158) Uncharacterized protein Lin2918 {Listeria innocua [TaxId: 1642]} Length = 158

class: Alpha and beta proteins (a+b)
fold: SMI1/KNR4-like
superfamily: SMI1/KNR4-like
family: SMI1/KNR4-like
domain: Uncharacterized protein Lin2918
species: Listeria innocua [TaxId: 1642]

 Score = 35.4 bits (81), Expect = 0.004
 Identities = 20/129 (15%), Positives = 36/129 (27%), Gaps = 11/129 (8%)

Query: 234 MEKRAVATIHELLTLTVEKKITLERIAHF--RLAMNLPKKLKEFLLQHQG-------IFY 284
           +E+         +T       T E I  +   L    P+  K FL ++          + 
Sbjct: 6   LEEVDRLITLSGITFHASGTGTPELIKIYQDALGNEFPETYKLFLEKYGTLTFNGVSFYG 65

Query: 285 ISTRGNHGK--LHTVFLREAYRKGELLEPNDLYLARRKLGELVLMSPRKVKMDTELVRNR 342
           IS RG          F  E  R    +    + +     G +  +    +  + E V   
Sbjct: 66  ISKRGLSAASIPDVKFATEQARTFGDINKEMIMIKNSGYGSIFSIDTSIIGSEGEPVIVE 125

Query: 343 RDRHDGGGY 351
            +       
Sbjct: 126 TNLSFKDNT 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00