Citrus Sinensis ID: 044504
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C952 | 693 | Cleavage and polyadenylat | yes | no | 0.984 | 0.746 | 0.907 | 0.0 | |
| Q9UKF6 | 684 | Cleavage and polyadenylat | yes | no | 0.961 | 0.738 | 0.620 | 0.0 | |
| P79101 | 684 | Cleavage and polyadenylat | yes | no | 0.961 | 0.738 | 0.620 | 0.0 | |
| Q9QXK7 | 684 | Cleavage and polyadenylat | yes | no | 0.961 | 0.738 | 0.618 | 0.0 | |
| Q86A79 | 774 | Cleavage and polyadenylat | yes | no | 0.979 | 0.664 | 0.579 | 0.0 | |
| O13794 | 757 | Endoribonuclease ysh1 OS= | yes | no | 0.969 | 0.672 | 0.539 | 1e-169 | |
| Q4PEJ3 | 880 | Endoribonuclease YSH1 OS= | N/A | no | 0.956 | 0.570 | 0.540 | 1e-169 | |
| Q6C2Z7 | 827 | Endoribonuclease YSH1 OS= | yes | no | 0.969 | 0.615 | 0.524 | 1e-162 | |
| Q6CUI5 | 764 | Endoribonuclease YSH1 OS= | yes | no | 0.963 | 0.662 | 0.481 | 1e-152 | |
| Q06224 | 779 | Endoribonuclease YSH1 OS= | yes | no | 0.883 | 0.595 | 0.521 | 1e-152 |
| >sp|Q9C952|CPSF3_ARATH Cleavage and polyadenylation specificity factor subunit 3-I OS=Arabidopsis thaliana GN=CPSF73-I PE=1 SV=1 | Back alignment and function desciption |
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Score = 1011 bits (2614), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/517 (90%), Positives = 503/517 (97%)
Query: 9 SLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
SLKRR+ P+SR+GDQLI+TPLGAG+EVGRSCVYMS++GK ILFDCGIHPAYSGMAALPYF
Sbjct: 7 SLKRREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYF 66
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV 128
DEIDPS+IDVLLITHFH+DHAASLPYFLEKTTF GRVFMTHATKAIYKLLLTDYVKVSKV
Sbjct: 67 DEIDPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVSKV 126
Query: 129 SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
SVEDMLFDEQDIN+SMDKIEV+DFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVR+LY
Sbjct: 127 SVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRILY 186
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
TGDYSREEDRHLRAAELPQFSPDICIIEST GVQLHQ R+IREKRFTDVIHST++QGGRV
Sbjct: 187 TGDYSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGRV 246
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
LIPAFALGRAQELLLILDEYW+NHP+ HNIPIYYASPLAKKCMAVYQTYILSMN+RIRNQ
Sbjct: 247 LIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQ 306
Query: 309 FANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
FANSNPF FKHISPLNSIDDF+DVGPSVVMA+PGGLQSGLSRQLFD WCSDKKNAC+IPG
Sbjct: 307 FANSNPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPG 366
Query: 369 YVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 428
Y+VEGTLAKTII+EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL
Sbjct: 367 YMVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 426
Query: 429 VHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGE 488
VHGE++EM RLK KL+TE D NTKI+TPKNC+SVEMYFNSEK+AKTIGRLAEKTP+VG+
Sbjct: 427 VHGEANEMMRLKQKLLTEFPDGNTKIMTPKNCESVEMYFNSEKLAKTIGRLAEKTPDVGD 486
Query: 489 TVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
TVSGILVKKGFTYQIMAPD+LH+FSQLSTA +TQRIT
Sbjct: 487 TVSGILVKKGFTYQIMAPDELHVFSQLSTATVTQRIT 523
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Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. May function as mRNA 3'-end-processing endonuclease and also be involved in the histone 3'-end pre-mRNA processing. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: 2EC: 7EC: .EC: - |
| >sp|Q9UKF6|CPSF3_HUMAN Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1 | Back alignment and function description |
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| >sp|P79101|CPSF3_BOVIN Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus GN=CPSF3 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9QXK7|CPSF3_MOUSE Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus GN=Cpsf3 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q86A79|CPSF3_DICDI Cleavage and polyadenylation specificity factor subunit 3 OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1 | Back alignment and function description |
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| >sp|O13794|YSH1_SCHPO Endoribonuclease ysh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ysh1 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q4PEJ3|YSH1_USTMA Endoribonuclease YSH1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=YSH1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q6C2Z7|YSH1_YARLI Endoribonuclease YSH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YSH1 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q6CUI5|YSH1_KLULA Endoribonuclease YSH1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=YSH1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q06224|YSH1_YEAST Endoribonuclease YSH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YSH1 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | ||||||
| 224140919 | 699 | predicted protein [Populus trichocarpa] | 1.0 | 0.751 | 0.916 | 0.0 | |
| 359486185 | 694 | PREDICTED: cleavage and polyadenylation | 1.0 | 0.756 | 0.918 | 0.0 | |
| 224140921 | 696 | predicted protein [Populus trichocarpa] | 1.0 | 0.754 | 0.918 | 0.0 | |
| 147787280 | 687 | hypothetical protein VITISV_029216 [Viti | 0.984 | 0.752 | 0.922 | 0.0 | |
| 359486187 | 693 | PREDICTED: cleavage and polyadenylation | 0.998 | 0.756 | 0.910 | 0.0 | |
| 15219848 | 693 | cleavage and polyadenylation specificity | 0.984 | 0.746 | 0.907 | 0.0 | |
| 18377654 | 693 | putative cleavage and polyadenylation sp | 0.984 | 0.746 | 0.907 | 0.0 | |
| 297837375 | 693 | hypothetical protein ARALYDRAFT_475225 [ | 0.984 | 0.746 | 0.905 | 0.0 | |
| 356543411 | 689 | PREDICTED: cleavage and polyadenylation | 0.977 | 0.744 | 0.879 | 0.0 | |
| 115456655 | 700 | Os03g0852900 [Oryza sativa Japonica Grou | 0.977 | 0.732 | 0.865 | 0.0 |
| >gi|224140919|ref|XP_002323824.1| predicted protein [Populus trichocarpa] gi|222866826|gb|EEF03957.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1030 bits (2664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/526 (91%), Positives = 510/526 (96%), Gaps = 1/526 (0%)
Query: 1 MASVGQPPSLKRRDAPVSREG-DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
MAS GQ SLKRRDAPV+REG DQL +TPLGAGNEVGRSCVYMS+KGKT+LFDCGIHPAY
Sbjct: 1 MASTGQSQSLKRRDAPVTREGGDQLTLTPLGAGNEVGRSCVYMSFKGKTVLFDCGIHPAY 60
Query: 60 SGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLL 119
SGMAALPYFDEIDPS IDVLL+THFHLDHAASLPYFLEKTTF+GRVFMTHATKAIYKLLL
Sbjct: 61 SGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFRGRVFMTHATKAIYKLLL 120
Query: 120 TDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMV 179
TDYVKVSKVSVEDMLFDE+DINRSMDKIEV+DFHQTV+VNGIKFWCYTAGHVLGAAMFMV
Sbjct: 121 TDYVKVSKVSVEDMLFDEKDINRSMDKIEVIDFHQTVDVNGIKFWCYTAGHVLGAAMFMV 180
Query: 180 DIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIH 239
DIAGVRVLYTGDYSREEDRHLRAAE+PQFSPDICIIESTYGVQLHQPR+IREKRFTDVIH
Sbjct: 181 DIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHIREKRFTDVIH 240
Query: 240 STISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYIL 299
STIS GGRVLIPAFALGRAQELLLILDEYWSNHPE HNIP+YYASPLAKKCM VYQTYIL
Sbjct: 241 STISLGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPVYYASPLAKKCMTVYQTYIL 300
Query: 300 SMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSD 359
SMNERIRNQFA+SNPFKFKHISPLNSI+DF+DVGPSVVMA+PGGLQSGLSRQLFD+WCSD
Sbjct: 301 SMNERIRNQFADSNPFKFKHISPLNSIEDFTDVGPSVVMATPGGLQSGLSRQLFDMWCSD 360
Query: 360 KKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLK 419
KKNACVIPG++VEGTLAKTII+EPKEV LMNGLTAPLNMQVHYISFSAHADYAQTSTFLK
Sbjct: 361 KKNACVIPGFLVEGTLAKTIINEPKEVQLMNGLTAPLNMQVHYISFSAHADYAQTSTFLK 420
Query: 420 ELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRL 479
ELMPPNIILVHGE++EMGRLK KL+TE D NTKIITPKNCQSVEMYFNSEKMAKT G+L
Sbjct: 421 ELMPPNIILVHGEANEMGRLKQKLITEFTDGNTKIITPKNCQSVEMYFNSEKMAKTTGKL 480
Query: 480 AEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
AE+TP+VGETVSGILVKKGFTYQIMAP+DLH+FSQLST NITQRIT
Sbjct: 481 AERTPDVGETVSGILVKKGFTYQIMAPEDLHVFSQLSTGNITQRIT 526
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486185|ref|XP_003633408.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224140921|ref|XP_002323825.1| predicted protein [Populus trichocarpa] gi|222866827|gb|EEF03958.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|147787280|emb|CAN71414.1| hypothetical protein VITISV_029216 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359486187|ref|XP_002271646.2| PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|15219848|ref|NP_176297.1| cleavage and polyadenylation specificity factor subunit 3-I [Arabidopsis thaliana] gi|30696512|ref|NP_849835.1| cleavage and polyadenylation specificity factor subunit 3-I [Arabidopsis thaliana] gi|79320389|ref|NP_001031215.1| cleavage and polyadenylation specificity factor subunit 3-I [Arabidopsis thaliana] gi|75262219|sp|Q9C952.1|CPSF3_ARATH RecName: Full=Cleavage and polyadenylation specificity factor subunit 3-I; AltName: Full=Cleavage and polyadenylation specificity factor 73 kDa subunit I; Short=AtCPSF73-I; Short=CPSF 73 kDa subunit I gi|12323330|gb|AAG51638.1|AC018908_4 putative cleavage and polyadenylation specificity factor; 72745-70039 [Arabidopsis thaliana] gi|23297661|gb|AAN13003.1| putative cleavage and polyadenylation specificity factor [Arabidopsis thaliana] gi|24415578|gb|AAN41458.1| putative cleavage and polyadenylation specificity factor 73 kDa subunit [Arabidopsis thaliana] gi|222422865|dbj|BAH19419.1| AT1G61010 [Arabidopsis thaliana] gi|222423059|dbj|BAH19511.1| AT1G61010 [Arabidopsis thaliana] gi|332195645|gb|AEE33766.1| cleavage and polyadenylation specificity factor subunit 3-I [Arabidopsis thaliana] gi|332195646|gb|AEE33767.1| cleavage and polyadenylation specificity factor subunit 3-I [Arabidopsis thaliana] gi|332195647|gb|AEE33768.1| cleavage and polyadenylation specificity factor subunit 3-I [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|18377654|gb|AAL66977.1| putative cleavage and polyadenylation specificity factor [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297837375|ref|XP_002886569.1| hypothetical protein ARALYDRAFT_475225 [Arabidopsis lyrata subsp. lyrata] gi|297332410|gb|EFH62828.1| hypothetical protein ARALYDRAFT_475225 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356543411|ref|XP_003540154.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|115456655|ref|NP_001051928.1| Os03g0852900 [Oryza sativa Japonica Group] gi|27573349|gb|AAO20067.1| putative cleavage and polyadenylation specifity factor protein [Oryza sativa Japonica Group] gi|29126360|gb|AAO66552.1| putative cleavage and polyadenylation specifity factor [Oryza sativa Japonica Group] gi|108712151|gb|ABF99946.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit, putative, expressed [Oryza sativa Japonica Group] gi|113550399|dbj|BAF13842.1| Os03g0852900 [Oryza sativa Japonica Group] gi|125588676|gb|EAZ29340.1| hypothetical protein OsJ_13407 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | ||||||
| TAIR|locus:2206076 | 693 | CPSF73-I "cleavage and polyade | 0.984 | 0.746 | 0.907 | 3.3e-260 | |
| UNIPROTKB|F1NKW5 | 685 | CPSF3 "Uncharacterized protein | 0.965 | 0.740 | 0.617 | 4.5e-178 | |
| UNIPROTKB|E2R7R2 | 717 | CPSF3 "Uncharacterized protein | 0.990 | 0.725 | 0.607 | 5.7e-178 | |
| UNIPROTKB|P79101 | 684 | CPSF3 "Cleavage and polyadenyl | 0.961 | 0.738 | 0.620 | 3.1e-177 | |
| UNIPROTKB|Q9UKF6 | 684 | CPSF3 "Cleavage and polyadenyl | 0.961 | 0.738 | 0.620 | 3.1e-177 | |
| MGI|MGI:1859328 | 684 | Cpsf3 "cleavage and polyadenyl | 0.961 | 0.738 | 0.618 | 6.5e-177 | |
| UNIPROTKB|G3V6W7 | 685 | Cpsf3 "Protein Cpsf3" [Rattus | 0.961 | 0.737 | 0.618 | 6.5e-177 | |
| RGD|1305767 | 685 | Cpsf3 "cleavage and polyadenyl | 0.961 | 0.737 | 0.616 | 1.4e-176 | |
| UNIPROTKB|I3LKR1 | 687 | CPSF3 "Uncharacterized protein | 0.961 | 0.735 | 0.616 | 7.5e-176 | |
| ZFIN|ZDB-GENE-030131-3275 | 690 | cpsf3 "cleavage and polyadenyl | 0.975 | 0.742 | 0.608 | 9.6e-176 |
| TAIR|locus:2206076 CPSF73-I "cleavage and polyadenylation specificity factor 73-I" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2504 (886.5 bits), Expect = 3.3e-260, P = 3.3e-260
Identities = 469/517 (90%), Positives = 503/517 (97%)
Query: 9 SLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
SLKRR+ P+SR+GDQLI+TPLGAG+EVGRSCVYMS++GK ILFDCGIHPAYSGMAALPYF
Sbjct: 7 SLKRREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYF 66
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV 128
DEIDPS+IDVLLITHFH+DHAASLPYFLEKTTF GRVFMTHATKAIYKLLLTDYVKVSKV
Sbjct: 67 DEIDPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVSKV 126
Query: 129 SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
SVEDMLFDEQDIN+SMDKIEV+DFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVR+LY
Sbjct: 127 SVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRILY 186
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
TGDYSREEDRHLRAAELPQFSPDICIIEST GVQLHQ R+IREKRFTDVIHST++QGGRV
Sbjct: 187 TGDYSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGRV 246
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
LIPAFALGRAQELLLILDEYW+NHP+ HNIPIYYASPLAKKCMAVYQTYILSMN+RIRNQ
Sbjct: 247 LIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQ 306
Query: 309 FANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
FANSNPF FKHISPLNSIDDF+DVGPSVVMA+PGGLQSGLSRQLFD WCSDKKNAC+IPG
Sbjct: 307 FANSNPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPG 366
Query: 369 YVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 428
Y+VEGTLAKTII+EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL
Sbjct: 367 YMVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 426
Query: 429 VHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGE 488
VHGE++EM RLK KL+TE D NTKI+TPKNC+SVEMYFNSEK+AKTIGRLAEKTP+VG+
Sbjct: 427 VHGEANEMMRLKQKLLTEFPDGNTKIMTPKNCESVEMYFNSEKLAKTIGRLAEKTPDVGD 486
Query: 489 TVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
TVSGILVKKGFTYQIMAPD+LH+FSQLSTA +TQRIT
Sbjct: 487 TVSGILVKKGFTYQIMAPDELHVFSQLSTATVTQRIT 523
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| UNIPROTKB|F1NKW5 CPSF3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2R7R2 CPSF3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P79101 CPSF3 "Cleavage and polyadenylation specificity factor subunit 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9UKF6 CPSF3 "Cleavage and polyadenylation specificity factor subunit 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| MGI|MGI:1859328 Cpsf3 "cleavage and polyadenylation specificity factor 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G3V6W7 Cpsf3 "Protein Cpsf3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| RGD|1305767 Cpsf3 "cleavage and polyadenylation specific factor 3, 73kDa" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|I3LKR1 CPSF3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-030131-3275 cpsf3 "cleavage and polyadenylation specific factor 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C952 | CPSF3_ARATH | 3, ., 1, ., 2, 7, ., - | 0.9071 | 0.9847 | 0.7460 | yes | no |
| O13794 | YSH1_SCHPO | 3, ., 1, ., 2, 7, ., - | 0.5390 | 0.9695 | 0.6723 | yes | no |
| Q6FUA5 | YSH1_CANGA | 3, ., 1, ., 2, 7, ., - | 0.5121 | 0.9028 | 0.6147 | yes | no |
| P79101 | CPSF3_BOVIN | 3, ., 1, ., 2, 7, ., - | 0.6200 | 0.9619 | 0.7383 | yes | no |
| Q9QXK7 | CPSF3_MOUSE | 3, ., 1, ., 2, 7, ., - | 0.6181 | 0.9619 | 0.7383 | yes | no |
| Q86A79 | CPSF3_DICDI | 3, ., 1, ., 2, 7, ., - | 0.5799 | 0.9790 | 0.6640 | yes | no |
| Q9UKF6 | CPSF3_HUMAN | 3, ., 1, ., 2, 7, ., - | 0.6200 | 0.9619 | 0.7383 | yes | no |
| Q6C2Z7 | YSH1_YARLI | 3, ., 1, ., 2, 7, ., - | 0.5240 | 0.9695 | 0.6154 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.1.27 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 525 | |||
| COG1236 | 427 | COG1236, YSH1, Predicted exonuclease of the beta-l | 1e-135 | |
| TIGR03675 | 630 | TIGR03675, arCOG00543, arCOG00543 universal archae | 2e-82 | |
| COG1782 | 637 | COG1782, COG1782, Predicted metal-dependent RNase, | 3e-78 | |
| smart01027 | 126 | smart01027, Beta-Casp, Beta-Casp domain | 6e-39 | |
| pfam10996 | 124 | pfam10996, Beta-Casp, Beta-Casp domain | 2e-30 | |
| TIGR04122 | 326 | TIGR04122, Xnuc_lig_assoc, putative exonuclease, D | 2e-17 | |
| smart00849 | 177 | smart00849, Lactamase_B, Metallo-beta-lactamase su | 3e-17 | |
| pfam00753 | 148 | pfam00753, Lactamase_B, Metallo-beta-lactamase sup | 6e-16 | |
| pfam12706 | 197 | pfam12706, Lactamase_B_2, Beta-lactamase superfami | 8e-14 | |
| pfam11718 | 208 | pfam11718, CPSF73-100_C, Pre-mRNA 3'-end-processin | 3e-13 | |
| smart01098 | 212 | smart01098, CPSF73-100_C, This is the C-terminal c | 4e-10 | |
| pfam07521 | 43 | pfam07521, RMMBL, RNA-metabolising metallo-beta-la | 5e-10 | |
| COG0595 | 555 | COG0595, COG0595, mRNA degradation ribonucleases J | 3e-08 | |
| COG1234 | 292 | COG1234, ElaC, Metal-dependent hydrolases of the b | 6e-08 | |
| COG0491 | 252 | COG0491, GloB, Zn-dependent hydrolases, including | 1e-06 | |
| COG2220 | 258 | COG2220, COG2220, Predicted Zn-dependent hydrolase | 2e-05 | |
| PRK00055 | 270 | PRK00055, PRK00055, ribonuclease Z; Reviewed | 2e-05 | |
| TIGR02651 | 299 | TIGR02651, RNase_Z, ribonuclease Z | 4e-05 | |
| COG1235 | 269 | COG1235, PhnP, Metal-dependent hydrolases of the b | 1e-04 | |
| COG1237 | 259 | COG1237, COG1237, Metal-dependent hydrolases of th | 1e-04 | |
| COG2333 | 293 | COG2333, ComEC, Predicted hydrolase (metallo-beta- | 6e-04 | |
| TIGR00649 | 422 | TIGR00649, MG423, conserved hypothetical protein | 0.001 | |
| COG0426 | 388 | COG0426, FpaA, Uncharacterized flavoproteins [Ener | 0.003 |
| >gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 399 bits (1026), Expect = e-135
Identities = 167/439 (38%), Positives = 245/439 (55%), Gaps = 15/439 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
+ LGA EVGRSCV + G IL DCG+ P P +D +L+TH H
Sbjct: 3 LRFLGAAREVGRSCVLLETGGTRILLDCGLFPGDPSPE-RPLLPPFPK--VDAVLLTHAH 59
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH +LPY + F+G V+ T T A+ K+LL D +K+++ + + E+D+ R D
Sbjct: 60 LDHIGALPYLVRNG-FEGPVYATPPTAALLKVLLGDSLKLAEGPDKP-PYSEEDVERVPD 117
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
I L + + VEV G+K Y AGH+LG+A ++++ G R+LYTGD R +DR L AEL
Sbjct: 118 LIRPLPYGEPVEVGGVKVTFYNAGHILGSAAILLEVDGGRILYTGDVKRRKDRLLNGAEL 177
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P D+ I+ESTYG +LH R+ E+RF + + + + +GG VLIPAFALGRAQELLLIL
Sbjct: 178 PP-CIDVLIVESTYGDRLHPNRDEVERRFIESVKAALERGGTVLIPAFALGRAQELLLIL 236
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNS 325
E + PIY P+A+ +A + I + + F+F S NS
Sbjct: 237 RELGF----AGDYPIYVDGPIARVALAYAKYPIGLDLPDLLKVAE--SRFRF-VESRRNS 289
Query: 326 IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
+ + D GP+VV+A+PG L+ G SR SD+KN ++PGY EGTL + ++
Sbjct: 290 MREGIDKGPAVVLAAPGMLKGGRSRYYLKHLLSDEKNWVLLPGYQAEGTLGRVLLEGGTS 349
Query: 386 VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMT 445
V + G+ + +V + FSAHAD + F+K++ PP ++LVHGE L+ +L+
Sbjct: 350 VHIK-GIEIKVKARVEELDFSAHADGDELLEFIKDISPPKVVLVHGEPEYGAALRARLLE 408
Query: 446 ELADCNTKIITPKNCQSVE 464
EL ++ P N + E
Sbjct: 409 ELIG-IRELELPANGEEYE 426
|
Length = 427 |
| >gnl|CDD|188365 TIGR03675, arCOG00543, arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein | Back alignment and domain information |
|---|
| >gnl|CDD|224696 COG1782, COG1782, Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|214983 smart01027, Beta-Casp, Beta-Casp domain | Back alignment and domain information |
|---|
| >gnl|CDD|220932 pfam10996, Beta-Casp, Beta-Casp domain | Back alignment and domain information |
|---|
| >gnl|CDD|200373 TIGR04122, Xnuc_lig_assoc, putative exonuclease, DNA ligase-associated | Back alignment and domain information |
|---|
| >gnl|CDD|214854 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|216099 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|221727 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain | Back alignment and domain information |
|---|
| >gnl|CDD|221184 pfam11718, CPSF73-100_C, Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term | Back alignment and domain information |
|---|
| >gnl|CDD|215023 smart01098, CPSF73-100_C, This is the C-terminal conserved region of the pre-mRNA 3'-end-processing of the polyadenylation factor CPSF-73/CPSF-100 proteins | Back alignment and domain information |
|---|
| >gnl|CDD|203663 pfam07521, RMMBL, RNA-metabolising metallo-beta-lactamase | Back alignment and domain information |
|---|
| >gnl|CDD|223668 COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224155 COG1234, ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|223565 COG0491, GloB, Zn-dependent hydrolases, including glyoxylases [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|225130 COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|234602 PRK00055, PRK00055, ribonuclease Z; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|233963 TIGR02651, RNase_Z, ribonuclease Z | Back alignment and domain information |
|---|
| >gnl|CDD|224156 COG1235, PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|224158 COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|225212 COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|233071 TIGR00649, MG423, conserved hypothetical protein | Back alignment and domain information |
|---|
| >gnl|CDD|223503 COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| KOG1137 | 668 | consensus mRNA cleavage and polyadenylation factor | 100.0 | |
| KOG1136 | 501 | consensus Predicted cleavage and polyadenylation s | 100.0 | |
| COG1782 | 637 | Predicted metal-dependent RNase, consists of a met | 100.0 | |
| TIGR03675 | 630 | arCOG00543 arCOG00543 universal archaeal KH-domain | 100.0 | |
| COG1236 | 427 | YSH1 Predicted exonuclease of the beta-lactamase f | 100.0 | |
| KOG1135 | 764 | consensus mRNA cleavage and polyadenylation factor | 100.0 | |
| TIGR00649 | 422 | MG423 conserved hypothetical protein. Contains an | 100.0 | |
| COG0595 | 555 | mRNA degradation ribonucleases J1/J2 (metallo-beta | 100.0 | |
| KOG1138 | 653 | consensus Predicted cleavage and polyadenylation s | 100.0 | |
| PF10996 | 126 | Beta-Casp: Beta-Casp domain; InterPro: IPR022712 T | 99.88 | |
| PRK11244 | 250 | phnP carbon-phosphorus lyase complex accessory pro | 99.85 | |
| TIGR02651 | 299 | RNase_Z ribonuclease Z. Processing of the 3-prime | 99.83 | |
| TIGR02649 | 303 | true_RNase_BN ribonuclease BN. Members of this pro | 99.81 | |
| TIGR03307 | 238 | PhnP phosphonate metabolism protein PhnP. This fam | 99.8 | |
| KOG1361 | 481 | consensus Predicted hydrolase involved in interstr | 99.79 | |
| PRK00055 | 270 | ribonuclease Z; Reviewed | 99.78 | |
| PRK02113 | 252 | putative hydrolase; Provisional | 99.78 | |
| PRK05184 | 302 | pyrroloquinoline quinone biosynthesis protein PqqB | 99.76 | |
| TIGR02108 | 302 | PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. | 99.75 | |
| COG1234 | 292 | ElaC Metal-dependent hydrolases of the beta-lactam | 99.69 | |
| PRK00685 | 228 | metal-dependent hydrolase; Provisional | 99.67 | |
| PRK02126 | 334 | ribonuclease Z; Provisional | 99.67 | |
| smart00849 | 183 | Lactamase_B Metallo-beta-lactamase superfamily. Ap | 99.66 | |
| PF12706 | 194 | Lactamase_B_2: Beta-lactamase superfamily domain; | 99.62 | |
| PRK04286 | 298 | hypothetical protein; Provisional | 99.6 | |
| TIGR02650 | 277 | RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me | 99.55 | |
| PF00753 | 194 | Lactamase_B: Metallo-beta-lactamase superfamily; I | 99.54 | |
| PRK11709 | 355 | putative L-ascorbate 6-phosphate lactonase; Provis | 99.48 | |
| PRK11921 | 394 | metallo-beta-lactamase/flavodoxin domain-containin | 99.47 | |
| COG2333 | 293 | ComEC Predicted hydrolase (metallo-beta-lactamase | 99.42 | |
| PLN02469 | 258 | hydroxyacylglutathione hydrolase | 99.4 | |
| PF07521 | 43 | RMMBL: RNA-metabolising metallo-beta-lactamase; In | 99.39 | |
| TIGR03413 | 248 | GSH_gloB hydroxyacylglutathione hydrolase. Members | 99.39 | |
| PRK05452 | 479 | anaerobic nitric oxide reductase flavorubredoxin; | 99.37 | |
| TIGR00361 | 662 | ComEC_Rec2 DNA internalization-related competence | 99.37 | |
| KOG2121 | 746 | consensus Predicted metal-dependent hydrolase (bet | 99.36 | |
| PRK11539 | 755 | ComEC family competence protein; Provisional | 99.36 | |
| PLN02962 | 251 | hydroxyacylglutathione hydrolase | 99.34 | |
| PLN02398 | 329 | hydroxyacylglutathione hydrolase | 99.33 | |
| PRK10241 | 251 | hydroxyacylglutathione hydrolase; Provisional | 99.3 | |
| PF13483 | 163 | Lactamase_B_3: Beta-lactamase superfamily domain; | 99.25 | |
| COG0491 | 252 | GloB Zn-dependent hydrolases, including glyoxylase | 99.24 | |
| COG2220 | 258 | Predicted Zn-dependent hydrolases of the beta-lact | 99.18 | |
| COG0426 | 388 | FpaA Uncharacterized flavoproteins [Energy product | 99.17 | |
| COG1235 | 269 | PhnP Metal-dependent hydrolases of the beta-lactam | 99.11 | |
| KOG0813 | 265 | consensus Glyoxylase [General function prediction | 99.1 | |
| COG2248 | 304 | Predicted hydrolase (metallo-beta-lactamase superf | 98.98 | |
| COG1237 | 259 | Metal-dependent hydrolases of the beta-lactamase s | 98.95 | |
| PF02112 | 335 | PDEase_II: cAMP phosphodiesterases class-II; Inter | 98.77 | |
| KOG0814 | 237 | consensus Glyoxylase [General function prediction | 97.9 | |
| PF07522 | 110 | DRMBL: DNA repair metallo-beta-lactamase; InterPro | 97.54 | |
| COG5212 | 356 | PDE1 Low-affinity cAMP phosphodiesterase [Signal t | 97.33 | |
| COG2015 | 655 | Alkyl sulfatase and related hydrolases [Secondary | 97.33 | |
| PF14597 | 199 | Lactamase_B_5: Metallo-beta-lactamase superfamily; | 97.29 | |
| KOG4736 | 302 | consensus Uncharacterized conserved protein [Funct | 97.01 | |
| PF13691 | 63 | Lactamase_B_4: tRNase Z endonuclease | 96.79 | |
| KOG3798 | 343 | consensus Predicted Zn-dependent hydrolase (beta-l | 96.03 | |
| KOG1137 | 668 | consensus mRNA cleavage and polyadenylation factor | 95.52 | |
| KOG3592 | 934 | consensus Microtubule-associated proteins [Cytoske | 89.76 | |
| PRK00685 | 228 | metal-dependent hydrolase; Provisional | 87.89 | |
| PRK00055 | 270 | ribonuclease Z; Reviewed | 86.69 |
| >KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-110 Score=829.78 Aligned_cols=505 Identities=66% Similarity=1.079 Sum_probs=492.5
Q ss_pred CCCCcEEEEEecCCCccCCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhh
Q 044504 19 REGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEK 98 (525)
Q Consensus 19 ~~~~~m~i~~LG~~~evg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~ 98 (525)
..++.+++++||+|+|||+||+++++.|++||+|||.+|++++..++|+++.++++.||.++|||+|+||++.+||++++
T Consensus 9 ~~~d~l~~~pLGag~EVGRSC~ile~kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qk 88 (668)
T KOG1137|consen 9 LNSDQLKFTPLGAGNEVGRSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQK 88 (668)
T ss_pred CCCCcEEEEECCCCcccCceEEEEEecCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeee
Confidence 34889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEeCCCCcCceEEE
Q 044504 99 TTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFM 178 (525)
Q Consensus 99 ~~~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~~gH~~gs~~~~ 178 (525)
..|.+++|+|++|++++++++.||.++.+...+..+|++.|+.+++.++++++|.++++++|++|+++.+||.+|+|||.
T Consensus 89 Tsf~grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~aGhVlgacMf~ 168 (668)
T KOG1137|consen 89 TSFIGRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYHAGHVLGACMFM 168 (668)
T ss_pred ccccceeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCCeEEEeeccchhhhheeee
Confidence 99999999999999999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred EEECCEEEEEeecCCCCCcccCccCCCCCCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHhcCCeEEEcccchhhH
Q 044504 179 VDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258 (525)
Q Consensus 179 i~~~~~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Esty~~~~~~~~~~~~~~l~~~i~~~~~~~g~vlip~fa~gr~ 258 (525)
+++.+.+++||||++++.|+++..++.|..++|++|+|||||...|.++.+++.+|...|..++.+||+||+|+||+||+
T Consensus 169 veiagv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt~vIh~~v~rGGR~L~PvFAlgrA 248 (668)
T KOG1137|consen 169 VEIAGVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLTWVIHSTVPRGGRVLIPVFALGRA 248 (668)
T ss_pred eeeceEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhhhhhHHhhccCCCceEeeeeecchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCEEEEChhHHHHHHHHHHhHHhhHHHHHHHhcCCCCCCCCCCcccCCccccCCCCCeEEE
Q 044504 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVM 338 (525)
Q Consensus 259 qell~~l~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~p~vii 338 (525)
|||+.+|++||..+.+++++|||+.|++|++|+.+|++|.+.||+.+++++...|||.|+++..+++.+.+++.+|||++
T Consensus 249 qELllildeyw~~h~~l~~iPiyyaSslakkcm~vfQtyv~~mnd~Irk~~~~~Npfifk~vs~L~~~D~f~D~gP~vv~ 328 (668)
T KOG1137|consen 249 QELLLILDEYWGNHVDLRDIPIYYASSLAKKCMGVFQTYVNMMNDRIRKQSALRNPFIFKHVSILRTGDWFDDEGPSVVM 328 (668)
T ss_pred HHHHHHHHHHhhcchhhhcCceeehhhHHHhhhhhHheehhhhhhhhHHhhccCCceEeeccccccccccccccCCceeE
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred eCCCCCCCChHHHHHHHHcCCCCCcEEecccCCCCChhHHhhcCCceeEeecCeeeeeeEEEEEeecccCCCHHHHHHHH
Q 044504 339 ASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFL 418 (525)
Q Consensus 339 a~~gml~~g~~~~~~~~~~~~~~n~ii~~gy~~~gt~~~~l~~~~~~~~~~~g~~i~~~~~v~~i~~S~Had~~~l~~~i 418 (525)
|+|||+++|+||+++++||+|++|+||++||+++||+|+.++++|+++...+|+.+|.+|+|++++||+|.|+.+..+|+
T Consensus 329 aspgmlqsglSRelfe~wcsD~kN~vlipGy~Vegtlak~il~eP~eI~a~~G~klp~~m~V~~isFaAhvdy~q~s~fi 408 (668)
T KOG1137|consen 329 ASPGMLQSGLSRELFERWCSDSKNAVLIPGYCVEGTLAKDILSEPKEIMAMNGRKLPLRMQVEYISFAAHVDYLQNSEFI 408 (668)
T ss_pred eCchHhhhhhhHHHHHHhCCCCCCcEEeccceechhHHHHHhcCchhhhcccCCcccccceEEEEEeeechhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEecCCHhHHHHHHHHHHHHhccC--CceEeeCCCCCEEEEeeCccchhhhhhhhhccCCccCCeEEeEEEe
Q 044504 419 KELMPPNIILVHGESHEMGRLKTKLMTELADC--NTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496 (525)
Q Consensus 419 ~~~~P~~vi~vHGe~~~~~~l~~~l~~~~~~~--~~~i~~p~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 496 (525)
+.++|+++|+||||.+.|.+|+..|+.++... ++.++.|+|+|.+++.+.+++.+|++|++|+ .|++ ++++|+|++
T Consensus 409 ~~i~~~~lilVHGE~neM~rLKs~L~~~f~d~kv~i~v~tprn~e~v~l~f~~eklak~~G~~a~-~p~~-~~~sgiLv~ 486 (668)
T KOG1137|consen 409 ADITPPHLILVHGEANEMMRLKSALEAAFRDGKVPIDVSTPRNCEDVELYFPGEKLAKTTGSLAE-VPKE-DRVSGILVS 486 (668)
T ss_pred HHhCCCeEEEEecccchhHHHHHHHHHHhccCCCcceecCCccceEeeeecCcchhhhhhhcccc-CCcc-ceEEEEEEe
Confidence 99999999999999999999999999888664 6789999999999999999999999999998 5544 899999999
Q ss_pred eCCcccccCccchhhhhccceeEEEeeeC
Q 044504 497 KGFTYQIMAPDDLHIFSQLSTANITQRIT 525 (525)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (525)
++++|.+++++||..|++|+++.+.|||+
T Consensus 487 ~~~~~~ils~edL~~ys~l~~~~~~erq~ 515 (668)
T KOG1137|consen 487 YGFSYAILSPEDLILYSDLKTIPLNERQV 515 (668)
T ss_pred cCCceeeccHHHhhhhhhheeeeccceEE
Confidence 99999999999999999999999999985
|
|
| >KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein | Back alignment and domain information |
|---|
| >COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00649 MG423 conserved hypothetical protein | Back alignment and domain information |
|---|
| >COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease | Back alignment and domain information |
|---|
| >PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02651 RNase_Z ribonuclease Z | Back alignment and domain information |
|---|
| >TIGR02649 true_RNase_BN ribonuclease BN | Back alignment and domain information |
|---|
| >TIGR03307 PhnP phosphonate metabolism protein PhnP | Back alignment and domain information |
|---|
| >KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK00055 ribonuclease Z; Reviewed | Back alignment and domain information |
|---|
| >PRK02113 putative hydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional | Back alignment and domain information |
|---|
| >TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B | Back alignment and domain information |
|---|
| >COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] | Back alignment and domain information |
|---|
| >PRK00685 metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK02126 ribonuclease Z; Provisional | Back alignment and domain information |
|---|
| >smart00849 Lactamase_B Metallo-beta-lactamase superfamily | Back alignment and domain information |
|---|
| >PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A | Back alignment and domain information |
|---|
| >PRK04286 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type | Back alignment and domain information |
|---|
| >PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] | Back alignment and domain information |
|---|
| >PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional | Back alignment and domain information |
|---|
| >PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
| >COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02469 hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
| >PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs | Back alignment and domain information |
|---|
| >TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
| >PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional | Back alignment and domain information |
|---|
| >TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2 | Back alignment and domain information |
|---|
| >KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11539 ComEC family competence protein; Provisional | Back alignment and domain information |
|---|
| >PLN02962 hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
| >PLN02398 hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
| >PRK10241 hydroxyacylglutathione hydrolase; Provisional | Back alignment and domain information |
|---|
| >PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A | Back alignment and domain information |
|---|
| >COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] | Back alignment and domain information |
|---|
| >COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] | Back alignment and domain information |
|---|
| >COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] | Back alignment and domain information |
|---|
| >COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0813 consensus Glyoxylase [General function prediction only] | Back alignment and domain information |
|---|
| >COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] | Back alignment and domain information |
|---|
| >PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3 | Back alignment and domain information |
|---|
| >KOG0814 consensus Glyoxylase [General function prediction only] | Back alignment and domain information |
|---|
| >PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs | Back alignment and domain information |
|---|
| >COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
| >PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B | Back alignment and domain information |
|---|
| >KOG4736 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF13691 Lactamase_B_4: tRNase Z endonuclease | Back alignment and domain information |
|---|
| >KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG3592 consensus Microtubule-associated proteins [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK00685 metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK00055 ribonuclease Z; Reviewed | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 525 | ||||
| 2i7t_A | 459 | Structure Of Human Cpsf-73 Length = 459 | 0.0 | ||
| 3af5_A | 651 | The Crystal Structure Of An Archaeal Cpsf Subunit, | 8e-51 | ||
| 2ycb_A | 636 | Structure Of The Archaeal Beta-Casp Protein With N- | 1e-50 | ||
| 3iek_A | 431 | Crystal Structure Of Native Ttha0252 From Thermus T | 7e-50 | ||
| 2dkf_A | 431 | Crystal Structure Of Ttha0252 From Thermus Thermoph | 2e-49 | ||
| 3idz_A | 431 | Crystal Structure Of S378q Mutant Ttha0252 From The | 2e-49 | ||
| 3ie0_A | 431 | Crystal Structure Of S378y Mutant Ttha0252 From The | 4e-49 | ||
| 3a4y_A | 431 | Crystal Structure Of H61a Mutant Ttha0252 From Ther | 9e-49 | ||
| 3ie1_A | 431 | Crystal Structure Of H380a Mutant Ttha0252 From The | 9e-49 | ||
| 3ie2_A | 431 | Crystal Structure Of H400v Mutant Ttha0252 From The | 1e-48 | ||
| 2xr1_A | 640 | Dimeric Archaeal Cleavage And Polyadenylation Speci | 3e-42 | ||
| 2i7x_A | 717 | Structure Of Yeast Cpsf-100 (Ydh1p) Length = 717 | 4e-07 | ||
| 1e5d_A | 402 | Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerob | 7e-04 |
| >pdb|2I7T|A Chain A, Structure Of Human Cpsf-73 Length = 459 | Back alignment and structure |
|
| >pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404 From Pyrococcus Horikoshii Length = 651 | Back alignment and structure |
| >pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With N-Terminal Kh Domains From Methanothermobacter Thermautotrophicus Length = 636 | Back alignment and structure |
| >pdb|3IEK|A Chain A, Crystal Structure Of Native Ttha0252 From Thermus Thermophilus Hb8 Length = 431 | Back alignment and structure |
| >pdb|2DKF|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus Hb8, A Rna Degradation Protein Of The Metallo-Beta-Lactamase Superfamily Length = 431 | Back alignment and structure |
| >pdb|3IDZ|A Chain A, Crystal Structure Of S378q Mutant Ttha0252 From Thermus Thermophilus Hb8 Length = 431 | Back alignment and structure |
| >pdb|3IE0|A Chain A, Crystal Structure Of S378y Mutant Ttha0252 From Thermus Thermophilus Hb8 Length = 431 | Back alignment and structure |
| >pdb|3A4Y|A Chain A, Crystal Structure Of H61a Mutant Ttha0252 From Thermus Thermophilus Hb8 Length = 431 | Back alignment and structure |
| >pdb|3IE1|A Chain A, Crystal Structure Of H380a Mutant Ttha0252 From Thermus Thermophilus Hb8 Complexed With Rna Length = 431 | Back alignment and structure |
| >pdb|3IE2|A Chain A, Crystal Structure Of H400v Mutant Ttha0252 From Thermus Thermophilus Hb8 Length = 431 | Back alignment and structure |
| >pdb|2XR1|A Chain A, Dimeric Archaeal Cleavage And Polyadenylation Specificity Factor With N-Terminal Kh Domains (Kh-Cpsf) From Methanosarcina Mazei Length = 640 | Back alignment and structure |
| >pdb|2I7X|A Chain A, Structure Of Yeast Cpsf-100 (Ydh1p) Length = 717 | Back alignment and structure |
| >pdb|1E5D|A Chain A, Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe Desulfovibrio Gigas Length = 402 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459 | Back alignment and structure |
|---|
Score = 650 bits (1678), Expect = 0.0
Identities = 289/451 (64%), Positives = 356/451 (78%), Gaps = 3/451 (0%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID+L
Sbjct: 8 ESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLL 67
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
LI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D
Sbjct: 68 LISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETD 127
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRH
Sbjct: 128 LEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRH 187
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGRAQ
Sbjct: 188 LMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQ 247
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
ELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF FKH
Sbjct: 248 ELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKH 307
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
IS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK I
Sbjct: 308 ISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHI 367
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM RL
Sbjct: 368 MSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARL 427
Query: 440 KTKLMTELADC---NTKIITPKNCQSVEMYF 467
K L+ E D + ++ P+N ++V + F
Sbjct: 428 KAALIREYEDNDEVHIEVHNPRNTEAVTLNF 458
|
| >3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Length = 431 | Back alignment and structure |
|---|
| >3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651 | Back alignment and structure |
|---|
| >2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 636 | Back alignment and structure |
|---|
| >2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640 | Back alignment and structure |
|---|
| >2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717 | Back alignment and structure |
|---|
| >2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Length = 429 | Back alignment and structure |
|---|
| >1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Length = 221 | Back alignment and structure |
|---|
| >1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Length = 268 | Back alignment and structure |
|---|
| >2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} Length = 284 | Back alignment and structure |
|---|
| >2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Length = 276 | Back alignment and structure |
|---|
| >4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Length = 303 | Back alignment and structure |
|---|
| >3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
| >3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Length = 261 | Back alignment and structure |
|---|
| >2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Length = 303 | Back alignment and structure |
|---|
| >1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Length = 320 | Back alignment and structure |
|---|
| >1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Length = 263 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Length = 280 | Back alignment and structure |
|---|
| >3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A Length = 274 | Back alignment and structure |
|---|
| >3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Length = 562 | Back alignment and structure |
|---|
| >3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Length = 235 | Back alignment and structure |
|---|
| >1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Length = 269 | Back alignment and structure |
|---|
| >2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Length = 280 | Back alignment and structure |
|---|
| >1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Length = 331 | Back alignment and structure |
|---|
| >3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Length = 555 | Back alignment and structure |
|---|
| >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Length = 404 | Back alignment and structure |
|---|
| >3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Length = 258 | Back alignment and structure |
|---|
| >1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein STR initiative, PSI, joint center for structural genomics, ELEC transport; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3 Length = 410 | Back alignment and structure |
|---|
| >3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Length = 294 | Back alignment and structure |
|---|
| >3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Length = 254 | Back alignment and structure |
|---|
| >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Length = 414 | Back alignment and structure |
|---|
| >2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Length = 306 | Back alignment and structure |
|---|
| >3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Length = 267 | Back alignment and structure |
|---|
| >2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Length = 210 | Back alignment and structure |
|---|
| >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Length = 398 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| 2i7t_A | 459 | Cleavage and polyadenylation specificity factor 73 | 100.0 | |
| 3iek_A | 431 | Ribonuclease TTHA0252; metallo beta lactamase fold | 100.0 | |
| 3af5_A | 651 | Putative uncharacterized protein PH1404; archaeal | 100.0 | |
| 2xr1_A | 640 | Cleavage and polyadenylation specificity factor 1 | 100.0 | |
| 2ycb_A | 636 | Beta-CAsp RNAse, cleavage and polyadenylation spec | 100.0 | |
| 2i7x_A | 717 | Protein CFT2; polyadenylation, metallo-B-lactamase | 100.0 | |
| 3zq4_A | 555 | Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat | 100.0 | |
| 3bk2_A | 562 | RNAse J, metal dependent hydrolase; endoribonuclea | 100.0 | |
| 2az4_A | 429 | Hypothetical protein EF2904; structural genomics, | 100.0 | |
| 3zdk_A | 336 | 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A | 100.0 | |
| 4b87_A | 367 | DNA cross-LINK repair 1A protein; dclre1A, DCLRE, | 100.0 | |
| 1zkp_A | 268 | Hypothetical protein BA1088; zinc binding protein, | 99.88 | |
| 2cbn_A | 306 | Ribonuclease Z; phosphodiesterase beta lactamase t | 99.87 | |
| 1y44_A | 320 | Ribonuclease Z; zinc-dependent metal hydrolase, hy | 99.87 | |
| 3g1p_A | 258 | Protein PHNP; C-P lyase, phosphodiesterase, phosph | 99.86 | |
| 3md7_A | 293 | Beta-lactamase-like; ssgcid, hydrolase, structural | 99.83 | |
| 3zwf_A | 368 | Zinc phosphodiesterase ELAC protein 1; beta-lactam | 99.82 | |
| 2e7y_A | 280 | TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, | 99.79 | |
| 3jxp_A | 321 | Coenzyme PQQ synthesis protein B; alpha-beta prote | 99.79 | |
| 3kl7_A | 235 | Putative metal-dependent hydrolase; structural gen | 99.76 | |
| 3m8t_A | 294 | 'BLR6230 protein; subclass B3 beta-lactamase, zinc | 99.7 | |
| 3rpc_A | 264 | Possible metal-dependent hydrolase; structural gen | 99.69 | |
| 2wyl_A | 360 | L-ascorbate-6-phosphate lactonase ULAG; hydrolase; | 99.66 | |
| 2r2d_A | 276 | AGR_PTI_140P, Zn-dependent hydrolases; lactonase, | 99.66 | |
| 3esh_A | 280 | Protein similar to metal-dependent hydrolase; stru | 99.66 | |
| 3bv6_A | 379 | Metal-dependent hydrolase; metallo protein, beta-l | 99.65 | |
| 3dha_A | 254 | N-acyl homoserine lactone hydrolase; zinc bimetall | 99.65 | |
| 1k07_A | 263 | FEZ-1 beta-lactamase; monomer with alpha-beta/BETA | 99.65 | |
| 1ztc_A | 221 | Hypothetical protein TM0894; structural genomics, | 99.63 | |
| 3adr_A | 261 | Putative uncharacterized protein ST1585; quorum se | 99.61 | |
| 4ax1_B | 303 | Metallo-beta-lactamase AIM-1; hydrolase, antibioti | 99.61 | |
| 3l6n_A | 219 | Metallo-beta-lactamase; zinc, hydolase, antibiotic | 99.61 | |
| 2xf4_A | 210 | Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A | 99.6 | |
| 1p9e_A | 331 | Methyl parathion hydrolase; Zn containing; 2.40A { | 99.59 | |
| 2bib_A | 547 | CBPE, teichoic acid phosphorylcholine esterase/ ch | 99.59 | |
| 4efz_A | 298 | Metallo-beta-lactamase family protein; structural | 99.58 | |
| 3q6v_A | 233 | Beta-lactamase; metalloenzyme, alpha-beta, hydrola | 99.58 | |
| 2zwr_A | 207 | Metallo-beta-lactamase superfamily protein; hydrol | 99.57 | |
| 2zo4_A | 317 | Metallo-beta-lactamase family protein; hydrolase; | 99.57 | |
| 3aj3_A | 274 | MLR6805 protein, 4-pyridoxolactonase; Zn-protein, | 99.57 | |
| 1m2x_A | 223 | Class B carbapenemase BLAB-1; alpha-beta/BETA-alph | 99.55 | |
| 1sml_A | 269 | Protein (penicillinase); metallo-beta-lactamase, a | 99.55 | |
| 2qed_A | 258 | Hydroxyacylglutathione hydrolase; metallo-B- super | 99.55 | |
| 2p18_A | 311 | Glyoxalase II; metalloprotein, beta sandwich, alph | 99.55 | |
| 1e5d_A | 402 | Rubredoxin\:oxygen oxidoreductase; oxygenreductase | 99.54 | |
| 1mqo_A | 227 | Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd | 99.53 | |
| 3iog_A | 227 | Beta-lactamase; hydrolase, antibiotic resistance, | 99.53 | |
| 1a7t_A | 232 | Metallo-beta-lactamase; hydrolase (beta-lactamase) | 99.53 | |
| 4hl2_A | 243 | Beta-lactamase NDM-1; structural genomics, PSI-bio | 99.52 | |
| 1qh5_A | 260 | Glyoxalase II, protein (hydroxyacylglutathione hyd | 99.52 | |
| 1vjn_A | 220 | Zn-dependent hydrolase of metallo-beta-lactamase s | 99.51 | |
| 2fhx_A | 246 | SPM-1; metallo-beta-lactamase, dinuclear zinc, ant | 99.5 | |
| 4dik_A | 410 | Flavoprotein; TM0755, electron transport, DI-iron | 99.5 | |
| 3hnn_A | 262 | Putative diflavin flavoprotein A 5; PSI-2, protein | 99.5 | |
| 1xm8_A | 254 | Glyoxalase II; structural genomics, protein struct | 99.5 | |
| 2vw8_A | 303 | PA1000, PQSE; quinolone signal response protein, s | 99.48 | |
| 2y8b_A | 265 | Metallo-B-lactamase; hydrolase, cephalosporins, an | 99.48 | |
| 3tp9_A | 474 | Beta-lactamase and rhodanese domain protein; struc | 99.48 | |
| 4ad9_A | 289 | Lactb2, beta-lactamase-like protein 2; hydrolase, | 99.47 | |
| 2ohh_A | 404 | Type A flavoprotein FPRA; beta-lactamase like doma | 99.46 | |
| 2gcu_A | 245 | Putative hydroxyacylglutathione hydrolase 3; ethyl | 99.45 | |
| 1ycg_A | 398 | Nitric oxide reductase; DIIRON site, oxidoreductas | 99.42 | |
| 1jjt_A | 228 | IMP-1 metallo beta-lactamase; metallo-beta-lactama | 99.42 | |
| 4eyb_A | 270 | Beta-lactamase NDM-1; metallo beta lactamase, anti | 99.4 | |
| 3r2u_A | 466 | Metallo-beta-lactamase family protein; structural | 99.39 | |
| 2q9u_A | 414 | A-type flavoprotein; flavodoxin like, beta lactama | 99.38 | |
| 2cfu_A | 658 | SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 | 99.23 | |
| 2p97_A | 201 | Hypothetical protein; putative metal-dependent hyd | 99.22 | |
| 2yhe_A | 668 | SEC-alkyl sulfatase; hydrolase, inversion, metallo | 98.65 | |
| 2p4z_A | 284 | Metal-dependent hydrolases of the beta-lactamase s | 98.82 | |
| 3h3e_A | 267 | Uncharacterized protein TM1679; structural genomic | 98.17 | |
| 3rpc_A | 264 | Possible metal-dependent hydrolase; structural gen | 89.1 | |
| 2wyl_A | 360 | L-ascorbate-6-phosphate lactonase ULAG; hydrolase; | 86.83 | |
| 3bv6_A | 379 | Metal-dependent hydrolase; metallo protein, beta-l | 86.77 | |
| 1zkp_A | 268 | Hypothetical protein BA1088; zinc binding protein, | 83.48 | |
| 2e7y_A | 280 | TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, | 81.38 |
| >2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-82 Score=670.47 Aligned_cols=451 Identities=64% Similarity=1.135 Sum_probs=368.4
Q ss_pred CCCCCcEEEEEecCCCccCCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHh
Q 044504 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLE 97 (525)
Q Consensus 18 ~~~~~~m~i~~LG~~~evg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~ 97 (525)
..++++|+|++||+++++|+||++|+.++..||||||+.++..+...++.+..+++.+||+|||||+|.||+||+|++..
T Consensus 6 ~~~~~~m~i~~LG~~~~vg~s~~li~~~~~~iLID~G~~~~~~~~~~~~~l~~~~~~~Id~VllTH~H~DH~ggl~~l~~ 85 (459)
T 2i7t_A 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQ 85 (459)
T ss_dssp ---CEEEEEEEEESSSSSSSCEEEEEETTEEEEECCCCCTTSCGGGGSCCGGGSCGGGCCEEECCCSSHHHHTTHHHHHH
T ss_pred cCCCCeEEEEEEecCCCCCCCEEEEEECCeEEEEeCCCCcCcccccccCcccccCcccCcEEEECCCChhhhhhhHHHHH
Confidence 34567899999999999999999999999999999999765444455665556778899999999999999999999988
Q ss_pred hcCCCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEeCCCCcCceEE
Q 044504 98 KTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMF 177 (525)
Q Consensus 98 ~~~~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~~gH~~gs~~~ 177 (525)
+.+++++||++++|.+++..++.++.+++.......+|+..++.....++..+++++++.++|++++++++||++|+++|
T Consensus 86 ~~~~~~~iy~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~GH~~Gs~~~ 165 (459)
T 2i7t_A 86 KTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMF 165 (459)
T ss_dssp HSSCCSEEEEEHHHHHHHHHHHHHHCC---------CCCHHHHHHHGGGEEEECTTCCEEETTEEEEEEECCSSTTCEEE
T ss_pred hcCCCCCEEechHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHhccEEeCCCCEEEECCEEEEEEeCCCccCcEEE
Confidence 88888999999999999998888877766555556778888887777788999999999999999999999999999999
Q ss_pred EEEECCEEEEEeecCCCCCcccCccCCCCCCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHhcCCeEEEcccchhh
Q 044504 178 MVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257 (525)
Q Consensus 178 ~i~~~~~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Esty~~~~~~~~~~~~~~l~~~i~~~~~~~g~vlip~fa~gr 257 (525)
.++.++.+++||||+...++..+....++..++|+||+||||+++.|+++.+++++|.+.+.++++++|+|+||+|++||
T Consensus 166 ~i~~~~~~il~sGD~~~~~~~~~~~~~~~~~~~D~Li~Esty~~~~~~~~~~~~~~l~~~i~~~~~~~g~vlip~fa~gr 245 (459)
T 2i7t_A 166 MIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245 (459)
T ss_dssp EEEETTEEEEECCSCCCC-----CCCCCCSSCCSEEEEECTTTTCCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCSSSS
T ss_pred EEEECCcEEEEeCCCCCCCCcccCCCCcCCCCCeEEEECCCCCCCCCCChHHHHHHHHHHHHHHHHCCCEEEEEecchhH
Confidence 99999999999999999887766555555568999999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCEEEEChhHHHHHHHHHHhHHhhHHHHHHHhcCCCCCCCCCCcccCCccccCCCCCeEE
Q 044504 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVV 337 (525)
Q Consensus 258 ~qell~~l~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~p~vi 337 (525)
+|||+++|+++|++++.++++|||++|+|+.+++++|+.+.+|+++.+++.+...|||.|+++..+.+.+++...+||||
T Consensus 246 ~qell~~l~~~~~~~~~~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~vi 325 (459)
T 2i7t_A 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVV 325 (459)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEC---------------------------------CCSEEECCCTTSSCCCSSEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCccEEEECHHHHHHHHHHHHHHHHHhHHHHHHhcccCCcCCCcceeeCCHHHhcCCCCeEE
Confidence 99999999999998777778999999999999999999999999998888777789999999888777766666799999
Q ss_pred EeCCCCCCCChHHHHHHHHcCCCCCcEEecccCCCCChhHHhhcCCceeEeecCeeeeeeEEEEEeecccCCCHHHHHHH
Q 044504 338 MASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTF 417 (525)
Q Consensus 338 ia~~gml~~g~~~~~~~~~~~~~~n~ii~~gy~~~gt~~~~l~~~~~~~~~~~g~~i~~~~~v~~i~~S~Had~~~l~~~ 417 (525)
||++|||++|++++++++|++|++|+|+|+|||++||+|++++++++.+....|+.++++|+|+.++||+|||++||.+|
T Consensus 326 ia~~gm~~~g~~~~~l~~~~~~~~~~ii~~gy~~~gt~g~~l~~~~~~~~~~~g~~~~~~~~v~~~~~S~Had~~~l~~~ 405 (459)
T 2i7t_A 326 MASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEF 405 (459)
T ss_dssp EESCTTCSSHHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHTTCCSEEECTTSCEEECCSEEEECCCSCCCCHHHHHHH
T ss_pred EEcCcccCCCHHHHHHHHHcCCCCCeEEEEecCCCCChHHHHhhCCceeeeeCCcEEEEEEEEEEeeecccCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877778999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCHhHHHHHHHHHHHHhccC---CceEeeCCCCCEEEEeeC
Q 044504 418 LKELMPPNIILVHGESHEMGRLKTKLMTELADC---NTKIITPKNCQSVEMYFN 468 (525)
Q Consensus 418 i~~~~P~~vi~vHGe~~~~~~l~~~l~~~~~~~---~~~i~~p~~g~~~~~~~~ 468 (525)
++.++|++||+||||...+.+|++.|+++++.. +.++++|+|||+++|.|+
T Consensus 406 i~~~~p~~v~~vHGe~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 459 (459)
T 2i7t_A 406 IRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFR 459 (459)
T ss_dssp HHHHCCSEEEEESSCHHHHHHHHHHHHHHHSSCTTCCCEEECCCTTCCEEEEEC
T ss_pred HHhcCCCeEEEeCCCHHHHHHHHHHHHHHhccccccCceEEeCCCCCEEEEEeC
Confidence 999999999999999999999999999888643 368999999999999874
|
| >3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* | Back alignment and structure |
|---|
| >3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* | Back alignment and structure |
|---|
| >2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
| >2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 | Back alignment and structure |
|---|
| >3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* | Back alignment and structure |
|---|
| >2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 | Back alignment and structure |
|---|
| >3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens} | Back alignment and structure |
|---|
| >4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens} | Back alignment and structure |
|---|
| >1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 | Back alignment and structure |
|---|
| >2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 | Back alignment and structure |
|---|
| >1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* | Back alignment and structure |
|---|
| >3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A | Back alignment and structure |
|---|
| >3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* | Back alignment and structure |
|---|
| >3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A | Back alignment and structure |
|---|
| >3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A | Back alignment and structure |
|---|
| >3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
| >3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A | Back alignment and structure |
|---|
| >3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} | Back alignment and structure |
|---|
| >2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* | Back alignment and structure |
|---|
| >2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
| >3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
| >3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} | Back alignment and structure |
|---|
| >3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A | Back alignment and structure |
|---|
| >1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A | Back alignment and structure |
|---|
| >1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 | Back alignment and structure |
|---|
| >3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B | Back alignment and structure |
|---|
| >3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 | Back alignment and structure |
|---|
| >2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} | Back alignment and structure |
|---|
| >1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 | Back alignment and structure |
|---|
| >2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* | Back alignment and structure |
|---|
| >4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
| >3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A | Back alignment and structure |
|---|
| >2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A | Back alignment and structure |
|---|
| >2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A | Back alignment and structure |
|---|
| >1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 | Back alignment and structure |
|---|
| >1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A | Back alignment and structure |
|---|
| >2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 | Back alignment and structure |
|---|
| >2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* | Back alignment and structure |
|---|
| >1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 | Back alignment and structure |
|---|
| >1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... | Back alignment and structure |
|---|
| >3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A | Back alignment and structure |
|---|
| >1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* | Back alignment and structure |
|---|
| >4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A | Back alignment and structure |
|---|
| >1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* | Back alignment and structure |
|---|
| >1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 | Back alignment and structure |
|---|
| >2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* | Back alignment and structure |
|---|
| >1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A | Back alignment and structure |
|---|
| >2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* | Back alignment and structure |
|---|
| >2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A | Back alignment and structure |
|---|
| >3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* | Back alignment and structure |
|---|
| >2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* | Back alignment and structure |
|---|
| >1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A | Back alignment and structure |
|---|
| >4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A | Back alignment and structure |
|---|
| >3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} | Back alignment and structure |
|---|
| >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} | Back alignment and structure |
|---|
| >2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* | Back alignment and structure |
|---|
| >2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 | Back alignment and structure |
|---|
| >2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} | Back alignment and structure |
|---|
| >2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} | Back alignment and structure |
|---|
| >3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} | Back alignment and structure |
|---|
| >2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* | Back alignment and structure |
|---|
| >3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} | Back alignment and structure |
|---|
| >1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 | Back alignment and structure |
|---|
| >2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 525 | ||||
| d2i7xa1 | 514 | d.157.1.10 (A:1-422,A:626-717) Cleavage factor two | 1e-110 | |
| d2i7ta1 | 451 | d.157.1.10 (A:9-459) Cleavage and polyadenylation | 1e-110 | |
| d2dkfa1 | 431 | d.157.1.10 (A:1-431) Putative RNA-degradation prot | 2e-94 | |
| d1wraa1 | 305 | d.157.1.8 (A:30-334) Teichoic acid phosphorylcholi | 1e-14 | |
| d2az4a1 | 183 | d.157.1.10 (A:56-238) Hypothetical protein EF2904 | 2e-12 | |
| d1ztca1 | 207 | d.157.1.11 (A:1-207) Hypothetical protein TM0894 { | 3e-07 | |
| d1p9ea_ | 294 | d.157.1.5 (A:) Methyl parathion hydrolase {Pseudom | 1e-06 | |
| d2e7ya1 | 280 | d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Ther | 3e-06 | |
| d2q0ia1 | 298 | d.157.1.14 (A:1-298) Quinolone signal response pro | 4e-06 | |
| d1vmea2 | 250 | d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, | 1e-05 | |
| d2aioa1 | 266 | d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xa | 2e-05 | |
| d1zkpa1 | 244 | d.157.1.9 (A:1-244) Hypothetical protein BA1088 (B | 5e-05 | |
| d2gmna1 | 264 | d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Br | 8e-05 | |
| d1xtoa_ | 304 | d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, P | 1e-04 | |
| d1k07a_ | 262 | d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoriba | 4e-04 | |
| d1y44a1 | 307 | d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Baci | 5e-04 | |
| d2cfua2 | 505 | d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudo | 6e-04 | |
| d2cbna1 | 305 | d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Esch | 0.001 | |
| d1ycga2 | 249 | d.157.1.3 (A:2-250) Nitric oxide reductase N-termi | 0.002 | |
| d1e5da2 | 249 | d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreducta | 0.004 |
| >d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Cleavage factor two protein 2, CFT2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 336 bits (863), Expect = e-110
Identities = 76/512 (14%), Positives = 168/512 (32%), Gaps = 87/512 (16%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G+G + + T+L D G +P+ + E IDV++++ ++
Sbjct: 11 GSGTT---VGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECL 67
Query: 90 ASLPYFL----EKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV--SVEDMLFDEQDINRS 143
+ + +V+ T + ++ D + V + D +DI S
Sbjct: 68 GAHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEIS 127
Query: 144 MDKIEVLDFHQTVEV----NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
D I L + Q V++ +G+ Y AG G +++ + +++Y ++ D
Sbjct: 128 FDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNI 187
Query: 200 LRAAELP--------QFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
L AA + II + QP R K F D + +S G V+IP
Sbjct: 188 LNAASILDATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIP 247
Query: 252 AFALGRAQELLLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
G+ +L + E + +P+ S + + ++ + ++ +
Sbjct: 248 VDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKT 307
Query: 309 F---ANSNPFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
+ N++PF+ + + ++ S G + S G L ++ + +K
Sbjct: 308 WENRNNTSPFEIGSRIKIIAPNELSKYPGSKICFVSEVG---ALINEVIIKVGNSEKTTL 364
Query: 365 VI--PGYVVEGTLAKTIISEPKEVT----------------------------------- 387
++ P + +L K + ++
Sbjct: 365 ILTKPSFECASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETNF 424
Query: 388 ---------------LMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
++ + L V ++ + D S L I+L +
Sbjct: 425 DNLDYLKIDKTLSKRTISTVNVQLKCSVVILNLQSLVDQRSASIIWPSLKSRKIVLSAPK 484
Query: 433 SHEMGRLKTKLMTELADCNTKIITPKNCQSVE 464
+ + KL+ + N +++ + VE
Sbjct: 485 QIQNEEITAKLIKK----NIEVVNMPLNKIVE 512
|
| >d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 | Back information, alignment and structure |
|---|
| >d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431 | Back information, alignment and structure |
|---|
| >d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 305 | Back information, alignment and structure |
|---|
| >d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Length = 183 | Back information, alignment and structure |
|---|
| >d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Length = 207 | Back information, alignment and structure |
|---|
| >d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Length = 294 | Back information, alignment and structure |
|---|
| >d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Length = 280 | Back information, alignment and structure |
|---|
| >d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Length = 298 | Back information, alignment and structure |
|---|
| >d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 250 | Back information, alignment and structure |
|---|
| >d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Length = 266 | Back information, alignment and structure |
|---|
| >d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Length = 244 | Back information, alignment and structure |
|---|
| >d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Length = 264 | Back information, alignment and structure |
|---|
| >d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Length = 304 | Back information, alignment and structure |
|---|
| >d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Length = 262 | Back information, alignment and structure |
|---|
| >d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Length = 307 | Back information, alignment and structure |
|---|
| >d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Length = 505 | Back information, alignment and structure |
|---|
| >d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} Length = 305 | Back information, alignment and structure |
|---|
| >d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Length = 249 | Back information, alignment and structure |
|---|
| >d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} Length = 249 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| d2i7xa1 | 514 | Cleavage factor two protein 2, CFT2 {Baker's yeast | 100.0 | |
| d2dkfa1 | 431 | Putative RNA-degradation protein TTHA0252 {Thermus | 100.0 | |
| d2i7ta1 | 451 | Cleavage and polyadenylation specificity factor su | 100.0 | |
| d1zkpa1 | 244 | Hypothetical protein BA1088 (BAS1016) {Bacillus an | 99.87 | |
| d2az4a1 | 183 | Hypothetical protein EF2904 {Enterococcus faecalis | 99.8 | |
| d2cbna1 | 305 | Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: | 99.77 | |
| d1y44a1 | 307 | Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId | 99.77 | |
| d1k07a_ | 262 | Zn metallo-beta-lactamase {Fluoribacter gormanii, | 99.67 | |
| d1p9ea_ | 294 | Methyl parathion hydrolase {Pseudomonas sp. WBC-3 | 99.65 | |
| d2aioa1 | 266 | Zn metallo-beta-lactamase {Xanthomonas maltophilia | 99.61 | |
| d1ztca1 | 207 | Hypothetical protein TM0894 {Thermotoga maritima [ | 99.57 | |
| d2gmna1 | 264 | Zn metallo-beta-lactamase {Bradyrhizobium japonicu | 99.56 | |
| d2e7ya1 | 280 | Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax | 99.55 | |
| d1x8ha_ | 228 | Zn metallo-beta-lactamase {Aeromonas hydrophila, C | 99.52 | |
| d2q0ia1 | 298 | Quinolone signal response protein PqsE {Pseudomona | 99.52 | |
| d1wraa1 | 305 | Teichoic acid phosphorylcholine esterase Pce (LytD | 99.51 | |
| d1xtoa_ | 304 | Coenzyme PQQ synthesis protein B, PqqB {Pseudomona | 99.5 | |
| d1m2xa_ | 219 | Zn metallo-beta-lactamase {Chryseobacterium mening | 99.43 | |
| d1e5da2 | 249 | Rubredoxin oxygen:oxidoreductase (ROO), N-terminal | 99.4 | |
| d1ko3a_ | 230 | Zn metallo-beta-lactamase {Pseudomonas aeruginosa, | 99.4 | |
| d1ycga2 | 249 | Nitric oxide reductase N-terminal domain {Moorella | 99.37 | |
| d1mqoa_ | 221 | Zn metallo-beta-lactamase {Bacillus cereus [TaxId: | 99.37 | |
| d1xm8a_ | 254 | Glyoxalase II (hydroxyacylglutathione hydrolase) { | 99.36 | |
| d1qh5a_ | 260 | Glyoxalase II (hydroxyacylglutathione hydrolase) { | 99.35 | |
| d1vjna_ | 209 | Hypothetical protein TM0207 {Thermotoga maritima [ | 99.32 | |
| d2qeda1 | 251 | Glyoxalase II (hydroxyacylglutathione hydrolase) { | 99.31 | |
| d1vmea2 | 250 | ROO-like flavoprotein TM0755, N-terminal domain {T | 99.28 | |
| d1jjta_ | 220 | Zn metallo-beta-lactamase {Pseudomonas aeruginosa, | 99.25 | |
| d1znba_ | 230 | Zn metallo-beta-lactamase {Bacteroides fragilis [T | 99.18 | |
| d2cfua2 | 505 | Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI | 99.16 | |
| d2p97a1 | 200 | Hypothetical protein Ava3068 {Anabaena variabilis | 98.55 | |
| d2e7ya1 | 280 | Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax | 90.84 | |
| d1zkpa1 | 244 | Hypothetical protein BA1088 (BAS1016) {Bacillus an | 90.46 | |
| d2cbna1 | 305 | Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: | 84.71 | |
| d1y44a1 | 307 | Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId | 83.15 |
| >d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Cleavage factor two protein 2, CFT2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-73 Score=606.71 Aligned_cols=435 Identities=17% Similarity=0.249 Sum_probs=372.8
Q ss_pred EEEEEecCCCccCCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhc----
Q 044504 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKT---- 99 (525)
Q Consensus 24 m~i~~LG~~~evg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~---- 99 (525)
.++.++|.|+. +.+|++|+.++.+||||||++++.......+......+.+||+|||||+|.||+|+||+|+...
T Consensus 3 ~~~~~~~~g~g-~~sc~ll~~~~~~iLlDcG~~~~~~~~~~~~~~~~~~~~~IdaillTH~H~DHiGalP~L~~~~~~~~ 81 (514)
T d2i7xa1 3 YKYNCCDDGSG-TTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSHF 81 (514)
T ss_dssp EEEEECCSSSS-SCCCEEEEETTEEEEECCCCCTTTSCHHHHHHHHHTTGGGCCEEECCCSSHHHHTTHHHHHHHSHHHH
T ss_pred EEEEEecCCCc-eeeEEEEEECCeEEEEECCCCcCccchhhhhhhhhcCcccCCEEEECCCChHHHCchHHHHHhccccc
Confidence 57788875554 4699999999999999999987655433322222345688999999999999999999997652
Q ss_pred CCCceEEecHHHHHHHHHHHHHHHhhhccc--cCCCCCCHHHHHHHhcccEEecCCcEEEeC----CEEEEEEeCCCCcC
Q 044504 100 TFKGRVFMTHATKAIYKLLLTDYVKVSKVS--VEDMLFDEQDINRSMDKIEVLDFHQTVEVN----GIKFWCYTAGHVLG 173 (525)
Q Consensus 100 ~~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----gi~v~~~~~gH~~g 173 (525)
++++|||+|++|+++++.++.|+.+..... ...++|+.+++..++.++..++|+++++++ ++.++++++||++|
T Consensus 82 ~~~~pIy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~y~e~~~i~~~~~~~~~~~~~aGHilG 161 (514)
T d2i7xa1 82 ISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPG 161 (514)
T ss_dssp HHTCEEEEEHHHHHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSSTT
T ss_pred CCCcCEEeCHHHHHHHHHHHHHHHHHhhhhcccccCCCCHHHHHHHHHhcccCCCCCeEEecCCcccEEEEEccCCCCCC
Confidence 468999999999999999999998776543 346789999999999999999999999995 69999999999999
Q ss_pred ceEEEEEECCEEEEEeecCCCCCcccCccCCCC--------CCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 044504 174 AAMFMVDIAGVRVLYTGDYSREEDRHLRAAELP--------QFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQG 245 (525)
Q Consensus 174 s~~~~i~~~~~~ilytGD~~~~~~~~~~~~~~~--------~~~~D~LI~Esty~~~~~~~~~~~~~~l~~~i~~~~~~~ 245 (525)
|++|.|+.++++|+||||++...++++..+.++ ....|.+++++||+...+.++.++++.|.+.+.+++++|
T Consensus 162 sa~~~I~~~~~~IvytGD~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lli~~t~~~~~~~~~~~~~~~l~~~i~~~~~~g 241 (514)
T d2i7xa1 162 GSIWCISTYSEKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSD 241 (514)
T ss_dssp CEEEEEECSSCEEEECSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEEECCSCCCCSSCHHHHHHHHHHHHHHHTSTT
T ss_pred ceEEEEEECCeEEEEEeccCCCCCccCCCccccccccccccccCCCEEEEEcCCCCCCCCChHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999998887665432 235677788889988888889999999999999999999
Q ss_pred CeEEEcccchhhHHHHHHHHHHHHhcC---CCCCCCCEEEEChhHHHHHHHHHHhHHhhHHHHHHHh---cCCCCCCCCC
Q 044504 246 GRVLIPAFALGRAQELLLILDEYWSNH---PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF---ANSNPFKFKH 319 (525)
Q Consensus 246 g~vlip~fa~gr~qell~~l~~~~~~~---~~~~~~pI~~~s~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~pf~~~~ 319 (525)
|+|+||+|++||+||++++|.++|++. +...++|||++|+++.+++++|+.+.+||++.+++.+ ...+||.|++
T Consensus 242 G~VlIP~fa~gR~QEil~~l~~~~~~~~~~~~~~~~pI~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~pf~~~~ 321 (514)
T d2i7xa1 242 GSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPFEIGS 321 (514)
T ss_dssp CEEEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHHHHHTCGGGSCHHHHHHHHSSSSCCTTCCTT
T ss_pred CEEEEEEcCchHHHHHHHHHHHHHHHHHhhccCCCceEEEEChHHHHHHHHHHHhHhhcCHHHHHHHhhhcCCCchhccC
Confidence 999999999999999999999999864 3346789999999999999999999999999988876 4568999999
Q ss_pred CcccCCcccc-CCCCCeEEEeCCCCCCCChHHHHHHHHcCCCCCcEEec--ccCCCCChhHHhhcCCc------------
Q 044504 320 ISPLNSIDDF-SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP--GYVVEGTLAKTIISEPK------------ 384 (525)
Q Consensus 320 ~~~~~~~~~~-~~~~p~viia~~gml~~g~~~~~~~~~~~~~~n~ii~~--gy~~~gt~~~~l~~~~~------------ 384 (525)
+..+.+.+++ ..++|||||||+|| |.++.++++|+.|++|+|+|| ||+.+||+++.+....+
T Consensus 322 ~~~i~~~~~l~~~~~p~VIiat~~~---G~~~~~l~~~a~d~~n~Vi~t~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 398 (514)
T d2i7xa1 322 RIKIIAPNELSKYPGSKICFVSEVG---ALINEVIIKVGNSEKTTLILTKPSFECASSLDKILEIVEQDERNWKTFPEDG 398 (514)
T ss_dssp TEEECCGGGGGGCCSCEEEEEESCH---HHHHHHHHHHSSCTTEEEEECSSCCTTCHHHHHHHHHHHTCC--------CC
T ss_pred ceeccCHHHHHhccCCcEEEEcCCC---chHHHHHHHHhcCCCCEEEEecCCCcccccHHHHHhhhhhhccccccccccc
Confidence 9888877665 34789999999987 999999999999999999998 99999999987742110
Q ss_pred --------------------------------------eeEeecCeeeeeeEEEEEeecccCCCHHHHHHHHHhcCCCeE
Q 044504 385 --------------------------------------EVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNI 426 (525)
Q Consensus 385 --------------------------------------~~~~~~g~~i~~~~~v~~i~~S~Had~~~l~~~i~~~~P~~v 426 (525)
......+..++++|+|..++||||||+++|++|++.++|++|
T Consensus 399 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~i~~SgHad~~el~~~~~~~~P~~v 478 (514)
T d2i7xa1 399 KSFLCDNYISIDTIKEEPLSKEETNFDNLDYLKIDKTLSKRTISTVNVQLKCSVVILNLQSLVDQRSASIIWPSLKSRKI 478 (514)
T ss_dssp CCEECCEEEEEEEEEEEESCSCCCCCSCCGGGSCSSCCEEEEEEEEEEEECSEEEECCCCCSCCHHHHHHHGGGSCCSEE
T ss_pred cccccCcceeecccccccccccccCcccccccccccccceeecccceEEEEEEEEEEEeeecCCHHHHHHHHHhhCCCEE
Confidence 001123567889999999999999999999999999999999
Q ss_pred EEecCCHhHHHHHHHHHHHHhccCCceEeeCCCCCEEEEe
Q 044504 427 ILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMY 466 (525)
Q Consensus 427 i~vHGe~~~~~~l~~~l~~~~~~~~~~i~~p~~g~~~~~~ 466 (525)
||||||..++.+|++.|+++ +.++++|++||+++|+
T Consensus 479 vlvHGe~~~~~~~a~~l~~~----g~~v~~p~~g~~ie~~ 514 (514)
T d2i7xa1 479 VLSAPKQIQNEEITAKLIKK----NIEVVNMPLNKIVEFS 514 (514)
T ss_dssp EECSCGGGSCHHHHHHHHHT----TCEEEECCSSCCEEEC
T ss_pred EEeCCCHHHHHHHHHHHHHC----CCeEEecCCCCEEeeC
Confidence 99999999999999999765 4699999999999984
|
| >d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
| >d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
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| >d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} | Back information, alignment and structure |
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| >d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} | Back information, alignment and structure |
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| >d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} | Back information, alignment and structure |
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| >d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
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| >d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} | Back information, alignment and structure |
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| >d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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| >d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
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| >d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
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| >d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} | Back information, alignment and structure |
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| >d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
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| >d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} | Back information, alignment and structure |
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| >d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
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| >d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
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| >d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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| >d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} | Back information, alignment and structure |
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| >d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} | Back information, alignment and structure |
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| >d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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| >d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} | Back information, alignment and structure |
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| >d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
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| >d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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