Citrus Sinensis ID: 044525

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500--
Protein Sequence
MLTPSATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQAELRRNLRLGLTSLPQPTNEYQIVVQPPAEEDEEPEEKIEEDMSDRLAREKAEEEARQQALLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRKELLKLLEHDNAKYPLDEKVAKKKKGNKRSANGPTAPIPVIEDFEEDELQESFTLLSDSRLNVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERREQAQKAAEEKRALELAEAQATANQAAEQVSEASESLPSEELGSSMAVDPPCDETTGQQINTAHMDIDSGKEHTAAVTDGCLSDTVPSFEEGKLPSHGVAVDTSGSSEVVKEDPAVDQQNVVEASNRNDALTKQESIAQETAKDDGFADESANKVHGAEFDKANLAAKELEAKDNLPLLNGDSTDK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHcccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccccccccHHHHHcHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccHcHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcccHHHccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHcccccccccccccccccccccEEEcccccccEEEEEccccccccccccccccEEEEEcccccccccccccccHccccccccccHcccccccHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mltpsatpggmgstprigmtpsrdgssfgvtpkgtpirdelhinedldmhdsAKLEQRRQAELRRNLRLgltslpqptneyqivvqppaeedeepeeKIEEDMSDRLAREKAEEEARQQALLRKRSKVLqrelprppvaSLELIRNSLlradgdkssfvpptsieQADEIIRKELLKLLEhdnakypldekvakkkkgnkrsangptapipviedfeeDELQESFTLLSDSRLNVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERREQAQKAAEEKRALELAEAQATANQAAEQVSeaseslpseelgssmavdppcdettgqqintahmdidsgkehtaavtdgclsdtvpsfeegklpshgvavdtsgssevvkedpavdqqnvveasnrndaltkqESIAQetakddgfadesankvhgaefDKANLAAKEleakdnlpllngdstdk
Flexible Loop (DISEMBL)
mltpsatpggmgstprigmtpsrdgssfgvtpkgtpirdelhinedldmhdsAKLEQRRQAELRRNLRlgltslpqptneyqivvqppaeedeepeeKIEEDMSDRLAREKAEEEARQQALlrkrskvlqrelprppvaslELIRNSLlradgdkssfvpptsieqaDEIIRKELLKLlehdnakypldekvakkkkgnkrsangptapipviEDFEEDELQESFTLLSDSRLNVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQqrygdlsteLERISRLIAERREQAQKAAEEKRALELAEAQATANQAAEQVSEASESLPSEELGSSMAVDPPCDETTGQQINTAHMDIDSGKEHTAAVTDGCLSDTVPSFEEGKLPSHGVAVDTsgssevvkedpavdqqnvveasnrndaltkqESIAQETAKDDGFADESANKVHGAEFDKANLAAkeleakdnlpllngdstdk
Low Complexity Region (SEG)
MLTPSATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQAELRRNLRLGLTSLPQPTNEYQIVVQppaeedeepeekieeDMSDrlarekaeeearqqallrKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRkellklleHDNAKYPLDEKVAKKKKGNKRSANGPTAPIPVIEDFEEDELQESFTLLSDSRLNVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIaerreqaqkaaeekralelaeaqatanqaaeqVseaseslpseelgssMAVDPPCDETTGQQINTAHMDIDSGKEHTAAVTDGCLSDTVPSFEEGKLPSHGVAVDTSGSSEVVKEDPAVDQQNVVEASNRNDALTKQESIAQETAKDDGFADESANKVHGAEFDkanlaakeleakDNLPLLNGDSTDK
Disordered region (IsUnstruct)
*************************************************************************************************************************************************************************IIRKELLKLL****************************************************************************AGTELECFLALQKQEQLAASSRINGLWED**************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*LTPSATPG**************************PIRDELH********************************PQPTNEYQ*******************************************************VAS*************************QADEIIRKELLKLLEHDN*******************************DF*********************************VKQMETAGTELECFLALQK******************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
*************TPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQAELRRNLRLGLTSLPQPTNEYQIVVQ**********************************LLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRKELLKLLEHDNAKYPLDEKVA***********GPTAPIPVIEDFEEDELQESFTLLSDSRLNVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAER*********************************************MAVDPPCDETTGQQINTAHMDIDSGKEHTAAVTDGCLSDTVPSFEEGKL*********************VDQQNVVEASNRNDALTKQESIAQETAKDDGFADESANKVHGAEFDKANLAAKELEAKDNLPLLNGDSTDK
Disordered Region (DISPRO)
*******************************P**TPIRDELHINEDLDMHDSAKLEQRRQAELRRNLRLGLTSLPQPTNEYQIVVQPPA********KIEEDMSDRLAREKAEEEARQQALLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRKELLKLLEHDNAKYPLDEKVAK************TAPIPVIEDFEEDELQESFTLLSDSRLNVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERREQAQKAAEEKRALELAEAQATANQAAEQVSEASESLPSEELGSS**************************************DTVPSFEEGKLPSHGVAVDTSGSSEVVKEDPAVDQQNVVEA********************************GAEFDKANLAAKELEAKDNLPLL*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLTPSATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQAELRRNLRLGLTSLPQPTNEYQIVVQPPAEEDEEPEEKIEEDMxxxxxxxxxxxxxxxxxxxxxRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRKELLKLLEHDNAKYPLDEKVAKKKKGNKRSANGPTAPIPVIEDFEEDELQESFTLLSDSRLNVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLPSEELGSSMAVDPPCDETTGQQINTAHMDIDSGKEHTAAVTDGCLSDTVPSFEEGKLPSHGVAVDTSGSSEVVKEDPAVDQQNVVEASNRNDALTKQESIAQETAKDDGFADESANKVHGAEFDKANLAAKELEAKDNLPLLNGDSTDK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	502	2.2.26 [Sep-21-2011]
P92948	844	Cell division cycle 5-lik	yes	no	0.456	0.271	0.734	6e-81
A7SD85	805	Cell division cycle 5-rel	N/A	no	0.541	0.337	0.309	2e-19
Q6A068	802	Cell division cycle 5-lik	yes	no	0.366	0.229	0.328	9e-17
O08837	802	Cell division cycle 5-lik	yes	no	0.366	0.229	0.328	9e-17
Q99459	802	Cell division cycle 5-lik	yes	no	0.364	0.228	0.334	1e-16
Q2KJC1	802	Cell division cycle 5-lik	yes	no	0.364	0.228	0.334	1e-16
P0CO94	838	Pre-mRNA-splicing factor	yes	no	0.352	0.211	0.336	1e-10
P0CO95	833	Pre-mRNA-splicing factor	N/A	no	0.352	0.212	0.336	1e-10
P39964	757	Pre-mRNA-splicing factor	yes	no	0.318	0.211	0.319	2e-08
Q4P652	820	Pre-mRNA-splicing factor	N/A	no	0.334	0.204	0.283	3e-06

>sp|P92948|CDC5L_ARATH Cell division cycle 5-like protein OS=Arabidopsis thaliana GN=CDC5 PE=1 SV=2

 Score =  301 bits (772), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 169/230 (73%), Positives = 197/230 (85%), Gaps = 1/230 (0%)

Query: 1   MLTPSATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQ 60
           MLTPS TPGG G TPRIG+TPSRDGSSF +TPKGTP RDELHINED+DMH+SAKLE++R+
Sbjct: 411 MLTPSMTPGGAGLTPRIGLTPSRDGSSFSMTPKGTPFRDELHINEDMDMHESAKLERQRR 470

Query: 61  AELRRNLRLGLTSLPQPTNEYQIVVQPPAEEDEEPEEKIEEDMSDRLAREKAEEEARQQA 120
            E RR+LR GLT LPQP NEYQIV QPP EE EEPEEKIEEDMSDR+AREKAEEEARQQA
Sbjct: 471 EEARRSLRSGLTGLPQPKNEYQIVAQPPPEESEEPEEKIEEDMSDRIAREKAEEEARQQA 530

Query: 121 LLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRKELLKLLE 180
           LL+KRSKVLQR+LPRPP ASL +IRNSLL ADGDKSS VPPT IE AD+++R+ELL+LLE
Sbjct: 531 LLKKRSKVLQRDLPRPPAASLAVIRNSLLSADGDKSSVVPPTPIEVADKMVREELLQLLE 590

Query: 181 HDNAKYPLDEKVAKKKKGNKRSANGPTAPIPVIEDFEEDELQESFTLLSD 230
           HDNAKYPLD+K A+KKKG K   N   + +  I+DF+E+ELQE+  ++ +
Sbjct: 591 HDNAKYPLDDK-AEKKKGAKNRTNRSASQVLAIDDFDENELQEADKMIKE 639

Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control.
Arabidopsis thaliana (taxid: 3702)

>sp|A7SD85|CDC5L_NEMVE Cell division cycle 5-related protein OS=Nematostella vectensis GN=cdc5l PE=3 SV=1

 Score = 97.8 bits (242), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/310 (30%), Positives = 165/310 (53%), Gaps = 38/310 (12%)

Query: 3   TPSATPG-GMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHIN-EDLDM--HDSAKLEQR 58
           TP  TPG G GSTPR GMTP     + G TP    +RD+L+IN ED  M  ++S    ++
Sbjct: 411 TPYRTPGEGSGSTPRQGMTPR---GAIG-TPSQRSVRDKLNINPEDAVMEEYESECAAKQ 466

Query: 59  RQAELRRNLRLGLTSLPQPTNEYQIVV-QPPAEEDEE--PEEKIEE--DMSDRLAREKAE 113
           +Q+E +  L  GL SLP P+N+++IV+ + PAE  EE  P + +E+  D+ +R    +A+
Sbjct: 467 QQSEAKEQLLAGLASLPAPSNDFEIVLPETPAEASEEHKPMDFVEDAADIDERALALRAK 526

Query: 114 EEARQQALLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTS-IEQADEIIR 172
           +E  ++   R+RS+ +QRELPRP   +  ++R          ++  PP S ++ A+E+I+
Sbjct: 527 QEELER---RRRSQAVQRELPRPSNVNTSVLR---------PTNVEPPLSALQMAEELIK 574

Query: 173 KELLKLLEHDNAKYPLDEKVAKKKKGNKRSANGPTAPIP---------VIEDFEEDELQE 223
           KE++ +L +D   +P  +++  +   NK++ N   A I           +E+F ++EL  
Sbjct: 575 KEMIVMLRNDIINHPTSQQI--ESLTNKKTRNAAQAVITGNRAALERDPMENFTDEELSS 632

Query: 224 SFTLLSDSRLNVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWE 283
           +  LL      V+ +  +    + +  K  E    ++  FL  Q++   AA +      E
Sbjct: 633 AKNLLRQEMDFVKSKMAHSDLPLEAYSKVWEECYAQV-LFLPSQQRYTRAAMASKKDRLE 691

Query: 284 DVQKQKELER 293
            ++K+ EL R
Sbjct: 692 SLEKRLELNR 701

Involved in mRNA splicing and cell cycle control.

Nematostella vectensis (taxid: 45351)

>sp|Q6A068|CDC5L_MOUSE Cell division cycle 5-like protein OS=Mus musculus GN=Cdc5l PE=1 SV=2

 Score = 89.0 bits (219), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 112/210 (53%), Gaps = 26/210 (12%)

Query: 3   TPSATP--GGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQ 60
           TP  TP  G  G TPR G TP         TP  TP+RD+L+IN +  M D +     +Q
Sbjct: 411 TPFRTPSNGAEGLTPRSGTTPK---PVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQ 467

Query: 61  AEL--RRNLRLGLTSLPQPTNEYQIVVQPPAE---EDEEPEEKIEEDMSDRLAREKAEEE 115
            E   R +LRLGL  LP P N+++IV+   AE   E+ E ++   ED +D  AR++A  +
Sbjct: 468 MERESREHLRLGLLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRD 527

Query: 116 ARQQALLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPP-TSIEQADEIIRKE 174
           A +   +++  K +Q++LPRP   +  ++R           +  PP T +++++E+I+KE
Sbjct: 528 AERVKEMKRMHKAVQKDLPRPSEVNETILR---------PLNVEPPLTDLQKSEELIKKE 578

Query: 175 LLKLLEHDNAKYPLDEKVAKKKKGNKRSAN 204
           ++ +L +D   +P +        GNK+  N
Sbjct: 579 MITMLHYDLLHHPYE------PSGNKKGKN 602

DNA-binding protein involved in cell cycle control. May act as a transcription activator. Also seems to be involved in the second catalytic step of pre-mRNA splicing.

Mus musculus (taxid: 10090)

>sp|O08837|CDC5L_RAT Cell division cycle 5-like protein OS=Rattus norvegicus GN=Cdc5l PE=1 SV=2

 Score = 88.6 bits (218), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 112/210 (53%), Gaps = 26/210 (12%)

Query: 3   TPSATP--GGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQ 60
           TP  TP  G  G TPR G TP         TP  TP+RD+L+IN +  M D +     +Q
Sbjct: 411 TPFRTPSNGAEGLTPRSGTTPK---PVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQ 467

Query: 61  AEL--RRNLRLGLTSLPQPTNEYQIVVQPPAE---EDEEPEEKIEEDMSDRLAREKAEEE 115
            E   R +LRLGL  LP P N+++IV+   AE   E+ E ++   ED +D  AR++A  +
Sbjct: 468 MERESREHLRLGLLGLPAPKNDFEIVLPENAEKELEEREMDDTYIEDAADVDARKQAIRD 527

Query: 116 ARQQALLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPP-TSIEQADEIIRKE 174
           A +   +++  K +Q++LPRP   +  ++R           +  PP T +++++E+I+KE
Sbjct: 528 AERVKEMKRMHKAVQKDLPRPSEVNETILR---------PLNVEPPLTDLQKSEELIKKE 578

Query: 175 LLKLLEHDNAKYPLDEKVAKKKKGNKRSAN 204
           ++ +L +D   +P +        GNK+  N
Sbjct: 579 MITMLHYDLLHHPYE------PSGNKKGKN 602

DNA-binding protein involved in cell cycle control. May act as a transcription activator. Also seems to be involved in the second catalytic step of pre-mRNA splicing.

Rattus norvegicus (taxid: 10116)

>sp|Q99459|CDC5L_HUMAN Cell division cycle 5-like protein OS=Homo sapiens GN=CDC5L PE=1 SV=2

 Score = 88.6 bits (218), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 110/203 (54%), Gaps = 20/203 (9%)

Query: 3   TPSATP--GGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQ 60
           TP  TP  G  G TPR G TP         TP  TP+RD+L+IN +  M D +     +Q
Sbjct: 411 TPFRTPSNGAEGLTPRSGTTPK---PVINSTPGRTPLRDKLNINPEDGMADYSDPSYVKQ 467

Query: 61  AEL--RRNLRLGLTSLPQPTNEYQIVVQPPAE---EDEEPEEKIEEDMSDRLAREKAEEE 115
            E   R +LRLGL  LP P N+++IV+   AE   E+ E ++   ED +D  AR++A  +
Sbjct: 468 MERESREHLRLGLLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRD 527

Query: 116 ARQQALLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPP-TSIEQADEIIRKE 174
           A +   +++  K +Q++LPRP   +  ++R           +  PP T +++++E+I+KE
Sbjct: 528 AERVKEMKRMHKAVQKDLPRPSEVNETILR---------PLNVEPPLTDLQKSEELIKKE 578

Query: 175 LLKLLEHDNAKYPLDEKVAKKKK 197
           ++ +L +D   +P +    KK K
Sbjct: 579 MITMLHYDLLHHPYEPSGNKKGK 601

DNA-binding protein involved in cell cycle control. May act as a transcription activator. Also seems to be involved in the second catalytic step of pre-mRNA splicing.

Homo sapiens (taxid: 9606)

>sp|Q2KJC1|CDC5L_BOVIN Cell division cycle 5-like protein OS=Bos taurus GN=CDC5L PE=2 SV=1

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 110/203 (54%), Gaps = 20/203 (9%)

Query: 3   TPSATP--GGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQ 60
           TP  TP  G  G TPR G TP         TP  TP+RD+L+IN +  M D +     +Q
Sbjct: 411 TPFRTPSHGSEGLTPRSGTTPK---PVINSTPGRTPLRDKLNINPEDGMADYSDPSYVKQ 467

Query: 61  AEL--RRNLRLGLTSLPQPTNEYQIVVQPPAE---EDEEPEEKIEEDMSDRLAREKAEEE 115
            E   R +LRLGL  LP P N+++IV+   AE   E+ E ++   ED +D  AR++A  +
Sbjct: 468 MERESREHLRLGLLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRD 527

Query: 116 ARQQALLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPP-TSIEQADEIIRKE 174
           A +   +++  K +Q++LPRP   +  ++R           +  PP T +++++E+I+KE
Sbjct: 528 AERVKEMKRMHKAVQKDLPRPSEVNETILR---------PLNVEPPLTDLQKSEELIKKE 578

Query: 175 LLKLLEHDNAKYPLDEKVAKKKK 197
           ++ +L +D   +P +    KK K
Sbjct: 579 MITMLHYDLLHHPYEPSGNKKGK 601

DNA-binding protein involved in cell cycle control. May act as a transcription activator. Also seems to be involved in the second catalytic step of pre-mRNA splicing.

Bos taurus (taxid: 9913)

>sp|P0CO94|CEF1_CRYNJ Pre-mRNA-splicing factor CEF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CEF1 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 106/190 (55%), Gaps = 13/190 (6%)

Query: 5   SATPGGMGSTPRIG-MTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKL-EQRRQAE 62
           +ATP  + ++ R G +T +R     G TP  TP RD+L+IN+D  ++    + ++RR AE
Sbjct: 417 AATPNPLATSARGGVLTSTRTVPGVGTTPLRTPFRDDLNINDDASVYGETPMNDRRRLAE 476

Query: 63  LRRNLRLGLTSLPQPTNEYQIVVQPPAEEDEEPEEKIEE-DMSDRLAREKAEEEARQQAL 121
            RR L+ G  +LP+P N +++      EE+ E  E + E D ++R AR KA  E  ++  
Sbjct: 477 SRRALKAGFAALPKPENNFELAETEEDEEEAEEAEPLTEEDAAERDARLKAAREEEERRE 536

Query: 122 LRKRSKVLQRELPRPP-VASLELIRNSLLRADGDKSSFVPPTSIEQAD--EIIRKELLKL 178
           L +RS V+++ LPRP  V + +L+       D   S+ V  T  E A   +++  E+  L
Sbjct: 537 LERRSTVIKKGLPRPVNVNTYKLL-------DDLNSAIVEQTDEEMAAAFKLVNLEVAML 589

Query: 179 LEHDNAKYPL 188
           ++HD+  +PL
Sbjct: 590 MKHDSIAHPL 599

Involved in pre-mRNA splicing and cell cycle control.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CO95|CEF1_CRYNB Pre-mRNA-splicing factor CEF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CEF1 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 106/190 (55%), Gaps = 13/190 (6%)

Query: 5   SATPGGMGSTPRIG-MTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKL-EQRRQAE 62
           +ATP  + ++ R G +T +R     G TP  TP RD+L+IN+D  ++    + ++RR AE
Sbjct: 412 AATPNPLATSARGGVLTSTRTVPGVGTTPLRTPFRDDLNINDDASVYGETPMNDRRRLAE 471

Query: 63  LRRNLRLGLTSLPQPTNEYQIVVQPPAEEDEEPEEKIEE-DMSDRLAREKAEEEARQQAL 121
            RR L+ G  +LP+P N +++      EE+ E  E + E D ++R AR KA  E  ++  
Sbjct: 472 SRRALKAGFAALPKPENNFELAETEEDEEEAEEAEPLTEEDAAERDARLKAAREEEERRE 531

Query: 122 LRKRSKVLQRELPRPP-VASLELIRNSLLRADGDKSSFVPPTSIEQAD--EIIRKELLKL 178
           L +RS V+++ LPRP  V + +L+       D   S+ V  T  E A   +++  E+  L
Sbjct: 532 LERRSTVIKKGLPRPVNVNTYKLL-------DDLNSAIVEQTDEEMAAAFKLVNLEVAML 584

Query: 179 LEHDNAKYPL 188
           ++HD+  +PL
Sbjct: 585 MKHDSIAHPL 594

Involved in pre-mRNA splicing and cell cycle control.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|P39964|CEF1_SCHPO Pre-mRNA-splicing factor cdc5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc5 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 97/191 (50%), Gaps = 31/191 (16%)

Query: 8   PGGMGSTPRIGMTPSR--DGSSFGVTPKGTPIR---DELHINEDLDMHDSAKLEQRRQAE 62
           PGG G T   G+TPS   +GS+    P+ TP R   D   IN   +   + +L   R+ +
Sbjct: 408 PGGTGYT---GVTPSHAANGSALAA-PQATPFRTPRDTFSINAAAER--AGRLASERENK 461

Query: 63  LR-RNLRLGLTSLPQPTNEYQIVVQPPAEEDEEPEEKI---EEDMSDRLAREKAEEEARQ 118
           +R + LR  L  LP+P N+Y+++ +P   ++ + E  +   EED +DR  R   E  A +
Sbjct: 462 IRLKALRELLAKLPKPKNDYELM-EPRFADETDVEATVGVLEEDATDR-ERRIQERIAEK 519

Query: 119 QALLR-KRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRKELLK 177
           + L + +RS+V+QR+L RP V   E  + SL   D        PT+      ++ KE++ 
Sbjct: 520 ERLAKARRSQVIQRDLIRPSVTQPEKWKRSLENED--------PTA-----NVLLKEMIA 566

Query: 178 LLEHDNAKYPL 188
           L+  D   YP 
Sbjct: 567 LISSDAINYPF 577

Involved in mRNA splicing and cell cycle control.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4P652|CEF1_USTMA Pre-mRNA-splicing factor CEF1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CEF1 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 33/201 (16%)

Query: 4   PSATPGGMGSTPRIGMTPSRDGSSF----GVTPKGTPIRDELHINEDLDM---HDSAKLE 56
           P  TPG      R G TP+    S       TP+ TP+RD L +N D      H++ +  
Sbjct: 423 PLLTPG-----LRNGQTPASASDSRLHADTSTPQRTPLRDNLGLNVDDSFQAGHETPREL 477

Query: 57  QRRQAELRRNLRLGLTSLPQPTNEYQIVV---------QPPAEEDEEPEEKIEEDMSDRL 107
           +R ++  + +LR  L+SLP P N++ IVV            +  D EP    EED ++R 
Sbjct: 478 KRARSLAQSHLRQSLSSLPAPKNDFDIVVDEQDVELQANSSSRLDNEPAMS-EEDAAERD 536

Query: 108 AREKAEEEARQQALLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQA 167
           AR   +    +     +RS+V++R LPRP    L  + N +     D+            
Sbjct: 537 ARLARQAAEEEARSEARRSQVVRRNLPRPAQVDLSRLHNQIDSRYRDRVEL--------- 587

Query: 168 DEIIRKELLKLLEHDNAKYPL 188
             ++ +E  +LL HD   +P+
Sbjct: 588 --LVARETAQLLHHDANVHPI 606

Involved in pre-mRNA splicing and cell cycle control.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	502
255561929	1049	cell division control protein, putative	0.454	0.217	0.816	1e-95
356576678	963	PREDICTED: cell division cycle 5-like pr	0.464	0.241	0.771	7e-93
356535202	962	PREDICTED: cell division cycle 5-like pr	0.904	0.471	0.436	2e-92
224123540	846	predicted protein [Populus trichocarpa]	0.442	0.262	0.789	1e-85
449449655	1010	PREDICTED: cell division cycle 5-like pr	0.454	0.225	0.786	2e-85
225453042	1012	PREDICTED: cell division cycle 5-like pr	0.754	0.374	0.495	5e-84
399950070	674	R2R3 MYB CDC5-like protein, partial [Iri	0.454	0.338	0.717	4e-82
41619098	844	MYB transcription factor [Arabidopsis th	0.456	0.271	0.734	4e-79
15218276	844	cell division cycle 5-like protein [Arab	0.456	0.271	0.734	4e-79
125589965	991	hypothetical protein OsJ_14362 [Oryza sa	0.490	0.248	0.631	2e-78

>gi|255561929|ref|XP_002521973.1| cell division control protein, putative [Ricinus communis] gi|223538777|gb|EEF40377.1| cell division control protein, putative [Ricinus communis]

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 187/229 (81%), Positives = 209/229 (91%), Gaps = 1/229 (0%)

Query: 1   MLTPSATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQ 60
           MLTPSATPG  G TPRIGMTP+RDG S+G+TPKGTPIRDEL INED+DMHDS+KLEQ+R+
Sbjct: 411 MLTPSATPGDAGLTPRIGMTPARDGYSYGMTPKGTPIRDELRINEDMDMHDSSKLEQQRK 470

Query: 61  AELRRNLRLGLTSLPQPTNEYQIVVQPPAEEDEEPEEKIEEDMSDRLAREKAEEEARQQA 120
           A+LRRNLR GL +LPQP NEYQIV+QPP E++EEPEEKIEEDMSDR+AREKAEEEARQQA
Sbjct: 471 ADLRRNLRSGLINLPQPKNEYQIVIQPPPEDNEEPEEKIEEDMSDRIAREKAEEEARQQA 530

Query: 121 LLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRKELLKLLE 180
           LLRKRSKVLQRELPRPP ASLELI+NSLLRADGDKSSFVPPTSIEQADE+IRKEL+ LLE
Sbjct: 531 LLRKRSKVLQRELPRPPAASLELIKNSLLRADGDKSSFVPPTSIEQADEMIRKELVTLLE 590

Query: 181 HDNAKYPLDEKVAK-KKKGNKRSANGPTAPIPVIEDFEEDELQESFTLL 228
           HDNAKYPLD+K+ K KKKG KRSANG  A IPVIEDFEEDE++E+   +
Sbjct: 591 HDNAKYPLDDKLNKEKKKGAKRSANGSAASIPVIEDFEEDEMKEADNFI 639

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576678|ref|XP_003556457.1| PREDICTED: cell division cycle 5-like protein-like [Glycine max]

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 182/236 (77%), Positives = 206/236 (87%), Gaps = 3/236 (1%)

Query: 1   MLTPSATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQ 60
           MLTPSATPGG G TPRIGMTP+RDG SF +TPKGTP+RD LHINED++MHDS KLE +RQ
Sbjct: 410 MLTPSATPGGAGLTPRIGMTPTRDGFSFSMTPKGTPLRDALHINEDMNMHDSTKLELQRQ 469

Query: 61  AELRRNLRLGLTSLPQPTNEYQIVVQPPAEEDEEPEEKIEEDMSDRLAREKAEEEARQQA 120
           A++RR+LR GL SLPQP NEYQIV+QP  E+ EEPEEKIEEDMSDR+AREKAEEEARQQA
Sbjct: 470 ADMRRSLRSGLGSLPQPKNEYQIVMQPVPEDAEEPEEKIEEDMSDRIAREKAEEEARQQA 529

Query: 121 LLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRKELLKLLE 180
           LLRKRSKVLQRELPRPP ASLELIRNSL+R D DKSSFVPPTSIEQADE+IR+ELL LLE
Sbjct: 530 LLRKRSKVLQRELPRPPTASLELIRNSLMRTDVDKSSFVPPTSIEQADEMIRRELLSLLE 589

Query: 181 HDNAKYPLDEKVAK-KKKGNKRSANGPTAPIPVIEDFEEDELQESFTLLSDSRLNV 235
           HDNAKYPLDEKV K KKKG KR+ NG  + +PVIEDFEEDE++E+  L+ +  L +
Sbjct: 590 HDNAKYPLDEKVIKEKKKGAKRAVNG--SAVPVIEDFEEDEMKEADKLIKEEALYL 643

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535202|ref|XP_003536137.1| PREDICTED: cell division cycle 5-like protein-like [Glycine max]

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 242/555 (43%), Positives = 322/555 (58%), Gaps = 101/555 (18%)

Query: 1   MLTPSATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQ 60
           MLTPSATPG  G TPRIGMTP+RDG SF +TPKGTP+RDELHINED++MHDS KLE +RQ
Sbjct: 410 MLTPSATPGAAGLTPRIGMTPTRDGFSFSMTPKGTPLRDELHINEDMNMHDSTKLELQRQ 469

Query: 61  AELRRNLRLGLTSLPQPTNEYQIVVQPPAEEDEEPEEKIEEDMSDRLAREKAEEEARQQA 120
           A++RR+LR GL SLPQP NEYQIV+ P  E+ EEPEEKIEEDMSDR+AREKAEEEARQQA
Sbjct: 470 ADMRRSLRSGLGSLPQPKNEYQIVMPPVLEDAEEPEEKIEEDMSDRIAREKAEEEARQQA 529

Query: 121 LLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRKELLKLLE 180
           LLRKRSKVLQRELPRPP ASLELIRNSL+R DGDKSSFVPPTSIEQADE+IR+ELL LLE
Sbjct: 530 LLRKRSKVLQRELPRPPTASLELIRNSLMRTDGDKSSFVPPTSIEQADEMIRRELLTLLE 589

Query: 181 HDNAKYPLDEKVAK-KKKGNKRSANGPTAPIPVIEDFEEDELQESFTLLSDSRL------ 233
           HDN KYPLD+KV K KKKG KR+ NG  + +PVIEDF+EDE++E+  L+ +  L      
Sbjct: 590 HDNGKYPLDDKVIKEKKKGAKRAVNG--SAVPVIEDFQEDEMKEADKLIKEEALYLCAAM 647

Query: 234 -------------------------------------NVQKRA------ENLRDQIHSTV 250
                                                N++K A      EN+R+++    
Sbjct: 648 GHEDEPLDEFIEAHRTCLNDLMYFPTRNAYGLSSVAGNMEKLAALQNEFENVRNKLDDGK 707

Query: 251 KQME---------TAGTELECFLALQKQ-----EQLAASSRINGLWEDVQKQKELERT-- 294
           ++M          T G E+    +L  Q     +Q+  ++     ++ +QKQ++L  +  
Sbjct: 708 EKMVRLEKKVMVLTQGYEMRVKKSLWPQIEATFKQMDVAATELECFKALQKQEQLAASHR 767

Query: 295 LQQRYGDLSTELE-------RISRLIAERREQAQKAAEEKRALELAEAQATANQAAE--- 344
           +   +G++  + E       R   LI E  E+ Q   ++ R L   + +  AN  A    
Sbjct: 768 INNLWGEVQKQKELEKTLQNRYGSLI-EELEKMQNVMDQCRLLAQQQEEIEANNHAREST 826

Query: 345 ------------QVSEASESLP-SEELGSSMAVDPPCDETTGQQINTAHMDIDSGKEHTA 391
                       Q +E  E++P S E G ++AV+   D T  QQ++  H    S   H  
Sbjct: 827 EIIESKAGETDVQSTENCETVPDSVEHGHALAVESSDDGTADQQVDIVHDQATSSVSHDM 886

Query: 392 AVTDGCLSDTVPSFE--EGKLPSHGVAVDTSGSSEVVKEDPAVDQQN------VVEASNR 443
            V    L++  P+ E  +GKL     A  T     +++   AV+  +      V +A N 
Sbjct: 887 DVDSDKLANPTPAAENVDGKLEVTATASYTDDGKTMLEMGAAVEVSSSPNHDVVADAVNS 946

Query: 444 ND-ALTKQESIAQET 457
           +D ++ +  ++ +ET
Sbjct: 947 HDNSMEETNAVGEET 961

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123540|ref|XP_002319105.1| predicted protein [Populus trichocarpa] gi|222857481|gb|EEE95028.1| predicted protein [Populus trichocarpa]

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 184/233 (78%), Positives = 206/233 (88%), Gaps = 11/233 (4%)

Query: 1   MLTPSATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQ 60
           MLTPSATPGG+G TPRIGMTPSRD  SFG+TPKGTPIRDELHINED+D+HD+ KLEQRRQ
Sbjct: 411 MLTPSATPGGVGLTPRIGMTPSRD--SFGITPKGTPIRDELHINEDMDIHDTEKLEQRRQ 468

Query: 61  AELRRNLRLGLTSLPQPTNEYQIVVQPPAEEDEEPEEKIEEDMSDRLAREKAEEEARQQA 120
           A+LRRNLR GL +LPQP NEYQIV+Q P E++EEPEEKIEEDMSDR+AREKA EEAR QA
Sbjct: 469 ADLRRNLRSGLGNLPQPKNEYQIVIQLPPEDNEEPEEKIEEDMSDRIAREKAAEEARLQA 528

Query: 121 LLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRKELLKLLE 180
           LLRKRSKVLQRELPRPP ASLELIR+SLLRADGDKSSFVPPTSIEQADE+IRKELL LLE
Sbjct: 529 LLRKRSKVLQRELPRPPTASLELIRDSLLRADGDKSSFVPPTSIEQADEMIRKELLALLE 588

Query: 181 HDNAKYPLDEKVAKKKKG-----NKRSANGPTAPIPVIEDFEEDELQESFTLL 228
           HDNAKYPL+EK +K+KK      +KRSA    A IP+IEDFEEDEL+++  L+
Sbjct: 589 HDNAKYPLEEKPSKEKKKGSKHPSKRSA----ASIPMIEDFEEDELKQADNLI 637

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449655|ref|XP_004142580.1| PREDICTED: cell division cycle 5-like protein-like [Cucumis sativus]

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 180/229 (78%), Positives = 203/229 (88%), Gaps = 1/229 (0%)

Query: 1   MLTPSATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQ 60
           MLTPSATPGG+G TPR GMTP+RD  SFG+TPKGTPIRDEL INED+D HDSAKLE +RQ
Sbjct: 411 MLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDMDAHDSAKLESQRQ 470

Query: 61  AELRRNLRLGLTSLPQPTNEYQIVVQPPAEEDEEPEEKIEEDMSDRLAREKAEEEARQQA 120
           A+LRRNL LGL +LPQP NEYQ+V+QP  E+ EEPEE IEEDMSDR+ARE+AEEEARQQA
Sbjct: 471 ADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEETIEEDMSDRIARERAEEEARQQA 530

Query: 121 LLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRKELLKLLE 180
           LLRKRSKVLQRELPRPP ASLELIRNSL+RADGDKSSFVPPT IEQADE+IRKELL LLE
Sbjct: 531 LLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLE 590

Query: 181 HDNAKYPLDEKVAK-KKKGNKRSANGPTAPIPVIEDFEEDELQESFTLL 228
           HDNAKYP+DEKV K KKKG+KR+ NGPT  IP I+DFE+ E++E+  L+
Sbjct: 591 HDNAKYPIDEKVNKEKKKGSKRTGNGPTTVIPTIDDFEQTEMEEADYLI 639

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453042|ref|XP_002265478.1| PREDICTED: cell division cycle 5-like protein [Vitis vinifera]

 Score =  318 bits (814), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 238/480 (49%), Positives = 286/480 (59%), Gaps = 101/480 (21%)

Query: 1   MLTPSATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQ 60
           MLTPSATPGG+GSTPRI MTPSRD  SFG+TPKGTPIRDELHINED+DMHDSAKLE RRQ
Sbjct: 411 MLTPSATPGGVGSTPRISMTPSRDAHSFGITPKGTPIRDELHINEDMDMHDSAKLELRRQ 470

Query: 61  AELRRNLRLGLTSLPQPTNEYQIVVQPPAEEDEEPEEKIEEDMSDRLAREKAEEEARQQA 120
           A+LRRNLR GL SLPQP NEYQ+V+QP  E++EEPEEKIEEDMSDRLARE+AEEEARQQA
Sbjct: 471 ADLRRNLRSGLGSLPQPKNEYQVVIQPIPEDNEEPEEKIEEDMSDRLARERAEEEARQQA 530

Query: 121 LLRKRSKVLQRELPRPPVASL---------------------------ELIRNSLL---- 149
           LLRKRSKVLQRELPRPPVASL                           E+IR  LL    
Sbjct: 531 LLRKRSKVLQRELPRPPVASLDLIRNSLMRADEDKSSFVPPTLIEQADEMIRKELLGLLE 590

Query: 150 ----------------------RADGDKSSFVPPTS------IEQADEIIRKELLKL--- 178
                                  A+G  +  VP         +++AD +I++E+  L   
Sbjct: 591 HDNAKYPLDEKTEKEKKKGGKRSANGKSAGSVPDIEDFEEAELKEADNLIKEEVQFLRVA 650

Query: 179 LEHDNAKYPLDEKV-AKKKKGN------KRSANGPTAPIPVIEDF--------------E 217
           + HDN    LDE V A K   N       R A G ++    +E                E
Sbjct: 651 MGHDNES--LDEFVEAHKTCLNDLMYFPTRDAYGLSSVAGNMEKLAALQNEFDNVKKRME 708

Query: 218 ED-----ELQESFTLLSDSRLNVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQL 272
           +D      L++   LL+      Q RA  L  QI +T KQM+TAGTELECF ALQKQEQL
Sbjct: 709 DDTKKAQRLEQKIKLLTHG---YQMRAGKLWTQIEATFKQMDTAGTELECFQALQKQEQL 765

Query: 273 AASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERREQA---QKAAEEKRA 329
           AAS RINGLWE+VQKQKELE+TLQ RYGDL  E ERI  LI E R QA   ++ A +  A
Sbjct: 766 AASHRINGLWEEVQKQKELEQTLQSRYGDLIAEQERIQSLINEYRVQAKIQEEIAAKNHA 825

Query: 330 LELAEAQATANQAAEQVSEASESLPSEELGSSMAVDPPCDETTGQQINTAHMDIDSGKEH 389
           LELAEA     +  +   E  E   ++ELG+S+ VDP       Q+++++  +  +  +H
Sbjct: 826 LELAEA-----EMCQMDVENPEPAAADELGNSVQVDPSHGGLPDQKMDSSQEEYHTSPKH 880

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|399950070|gb|AFP65720.1| R2R3 MYB CDC5-like protein, partial [Iris fulva]

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 165/230 (71%), Positives = 192/230 (83%), Gaps = 2/230 (0%)

Query: 1   MLTPSATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQ 60
           M TP A+PG MG TPRI MTPSRDG SFGVTPK TP RD+ HINED++M D+AKLE +RQ
Sbjct: 415 MSTPMASPGPMGLTPRISMTPSRDGHSFGVTPKITPFRDQFHINEDIEMMDNAKLELQRQ 474

Query: 61  AELRRNLRLGLTSLPQPTNEYQIVVQPPAEEDEEPEEKIEEDMSDRLAREKAEEEARQQA 120
           AE++RNLR GLTSLPQP NEYQIV+QP  EE+EE E+KIEEDMSDR+AREKA E+ARQ+A
Sbjct: 475 AEMKRNLRSGLTSLPQPKNEYQIVIQPIPEENEEVEDKIEEDMSDRIAREKALEQARQEA 534

Query: 121 LLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRKELLKLLE 180
           LLRKRSKVLQRELPRPP ASL+LIRN L+R + DKSSFVPPT  E ADE+I KELL LLE
Sbjct: 535 LLRKRSKVLQRELPRPPPASLDLIRNLLMRGNEDKSSFVPPTLFELADEMINKELLALLE 594

Query: 181 HDNAKYPLD-EKVAKKKKGNKRSANGPTA-PIPVIEDFEEDELQESFTLL 228
           HDNAKYP D +   +KKKG KR+ NG ++  +P IEDFEEDEL+ES +L+
Sbjct: 595 HDNAKYPFDEKAEKEKKKGAKRTVNGKSSLAVPEIEDFEEDELKESDSLI 644

Source: Iris fulva

Species: Iris fulva

Genus: Iris

Family: Iridaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|41619098|gb|AAS10023.1| MYB transcription factor [Arabidopsis thaliana]

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 169/230 (73%), Positives = 197/230 (85%), Gaps = 1/230 (0%)

Query: 1   MLTPSATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQ 60
           MLTPS TPGG G TPRIG+TPSRDGSSF +TPKGTP RDELHINED+DMH+SAKLE++R+
Sbjct: 411 MLTPSMTPGGAGLTPRIGLTPSRDGSSFSMTPKGTPFRDELHINEDMDMHESAKLERQRR 470

Query: 61  AELRRNLRLGLTSLPQPTNEYQIVVQPPAEEDEEPEEKIEEDMSDRLAREKAEEEARQQA 120
            E RR+LR GLT LPQP NEYQIV QPP EE EEPEEKIEEDMSDR+AREKAEEEARQQA
Sbjct: 471 EEARRSLRSGLTGLPQPKNEYQIVAQPPPEESEEPEEKIEEDMSDRIAREKAEEEARQQA 530

Query: 121 LLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRKELLKLLE 180
           LL+KRSKVLQR+LPRPP ASL +IRNSLL ADGDKSS VPPT IE AD+++R+ELL+LLE
Sbjct: 531 LLKKRSKVLQRDLPRPPAASLAVIRNSLLSADGDKSSVVPPTPIEVADKMVREELLQLLE 590

Query: 181 HDNAKYPLDEKVAKKKKGNKRSANGPTAPIPVIEDFEEDELQESFTLLSD 230
           HDNAKYPLD+K A+KKKG K   N   + +  I+DF+E+ELQE+  ++ +
Sbjct: 591 HDNAKYPLDDK-AEKKKGAKNRTNRSASQVLAIDDFDENELQEADKMIKE 639

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218276|ref|NP_172448.1| cell division cycle 5-like protein [Arabidopsis thaliana] gi|288561907|sp|P92948.2|CDC5L_ARATH RecName: Full=Cell division cycle 5-like protein; Short=Cdc5-like protein; AltName: Full=Atypical R2R3-MYB transcription factor CDC5; AltName: Full=MOS4-associated complex protein 1; Short=MAC protein 1; AltName: Full=Protein MYB DOMAIN CELL DIVISION CYCLE 5; Short=AtMYBCD5 gi|2160167|gb|AAB60730.1| Identical to A. thaliana Myb-like protein (gb|D58424) [Arabidopsis thaliana] gi|20260316|gb|AAM13056.1| putative Myb DNA-binding protein [Arabidopsis thaliana] gi|31711768|gb|AAP68240.1| At1g09770 [Arabidopsis thaliana] gi|332190369|gb|AEE28490.1| cell division cycle 5-like protein [Arabidopsis thaliana]

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 169/230 (73%), Positives = 197/230 (85%), Gaps = 1/230 (0%)

Query: 1   MLTPSATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQ 60
           MLTPS TPGG G TPRIG+TPSRDGSSF +TPKGTP RDELHINED+DMH+SAKLE++R+
Sbjct: 411 MLTPSMTPGGAGLTPRIGLTPSRDGSSFSMTPKGTPFRDELHINEDMDMHESAKLERQRR 470

Query: 61  AELRRNLRLGLTSLPQPTNEYQIVVQPPAEEDEEPEEKIEEDMSDRLAREKAEEEARQQA 120
            E RR+LR GLT LPQP NEYQIV QPP EE EEPEEKIEEDMSDR+AREKAEEEARQQA
Sbjct: 471 EEARRSLRSGLTGLPQPKNEYQIVAQPPPEESEEPEEKIEEDMSDRIAREKAEEEARQQA 530

Query: 121 LLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRKELLKLLE 180
           LL+KRSKVLQR+LPRPP ASL +IRNSLL ADGDKSS VPPT IE AD+++R+ELL+LLE
Sbjct: 531 LLKKRSKVLQRDLPRPPAASLAVIRNSLLSADGDKSSVVPPTPIEVADKMVREELLQLLE 590

Query: 181 HDNAKYPLDEKVAKKKKGNKRSANGPTAPIPVIEDFEEDELQESFTLLSD 230
           HDNAKYPLD+K A+KKKG K   N   + +  I+DF+E+ELQE+  ++ +
Sbjct: 591 HDNAKYPLDDK-AEKKKGAKNRTNRSASQVLAIDDFDENELQEADKMIKE 639

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125589965|gb|EAZ30315.1| hypothetical protein OsJ_14362 [Oryza sativa Japonica Group]

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 161/255 (63%), Positives = 203/255 (79%), Gaps = 9/255 (3%)

Query: 1   MLTPSATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQ 60
           M TP A+PG  G+TPRIGMTPSRDGSSFG+TPK TP RDEL INE++DM D+AKLE RRQ
Sbjct: 429 MATPLASPGP-GATPRIGMTPSRDGSSFGLTPKSTPFRDELRINEEVDMQDTAKLELRRQ 487

Query: 61  AELRRNLRLGLTSLPQPTNEYQIVVQPPAEEDEEPEEKIEEDMSDRLAREKAEEEARQQA 120
           AELR++LR G  S+PQP NEYQIV+ P  EE++E  E+  EDMSDRLARE+AEE+ARQ+A
Sbjct: 488 AELRKSLRSGFASIPQPKNEYQIVMPPITEEEKEEAEEKIEDMSDRLARERAEEQARQEA 547

Query: 121 LLRKRSKVLQRELPRPPVASLELIRNSLLRA--DGDKSSFVPPTSIEQADEIIRKELLKL 178
           LLRKRSKVLQR LPRPP AS+E++R +L++      +S+FVPPTS+EQADE+I +ELL+L
Sbjct: 548 LLRKRSKVLQRSLPRPPAASIEILRQTLIKGGESRSRSTFVPPTSLEQADELINEELLRL 607

Query: 179 LEHDNAKYPLDEKVAK-KKKGNKRSANGPTAPIPVIEDFEEDELQESFTLLSDS----RL 233
           LEHDNAKYPLDEK  K KKKG+KR ANG T  +P IEDF+EDEL+E+ ++L +     R+
Sbjct: 608 LEHDNAKYPLDEKTQKDKKKGSKRQANG-TPSVPEIEDFDEDELKEANSMLEEEVQYLRV 666

Query: 234 NVQKRAENLRDQIHS 248
            +   +E+L D + +
Sbjct: 667 AMGHESESLEDFVKA 681

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	502
TAIR|locus:2024336	844	CDC5 "cell division cycle 5" [	0.456	0.271	0.582	1.1e-84
ZFIN|ZDB-GENE-040426-821	801	cdc5l "CDC5 cell division cycl	0.575	0.360	0.275	4.1e-16
UNIPROTKB|E1BWQ5	806	CDC5L "Uncharacterized protein	0.579	0.361	0.250	3.6e-12
UNIPROTKB|E1C6A9	807	CDC5L "Uncharacterized protein	0.579	0.360	0.250	3.6e-12
UNIPROTKB|E2RLP4	802	CDC5L "Uncharacterized protein	0.577	0.361	0.253	7.6e-12
UNIPROTKB|Q99459	802	CDC5L "Cell division cycle 5-l	0.577	0.361	0.253	7.6e-12
MGI|MGI:1918952	802	Cdc5l "cell division cycle 5-l	0.585	0.366	0.247	9.9e-12
RGD|70892	802	Cdc5l "cell division cycle 5-l	0.585	0.366	0.247	1.3e-11
UNIPROTKB|Q2KJC1	802	CDC5L "Cell division cycle 5-l	0.577	0.361	0.250	1.6e-11
UNIPROTKB|F1RQS5	803	CDC5L "Uncharacterized protein	0.577	0.361	0.250	1.6e-11

TAIR|locus:2024336 CDC5 "cell division cycle 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 660 (237.4 bits), Expect = 1.1e-84, Sum P(3) = 1.1e-84
 Identities = 134/230 (58%), Positives = 158/230 (68%)

Query:     1 MLTPSATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQ 60
             MLTPS TPGG G TPRIG+TPSRDGSSF +TPKGTP RDELHINED+DMH+SAKLE++R+
Sbjct:   411 MLTPSMTPGGAGLTPRIGLTPSRDGSSFSMTPKGTPFRDELHINEDMDMHESAKLERQRR 470

Query:    61 AELRRNLRLGLTSLPQPTNEYQIVVQXXXXXXXXXXXXXXXDMSDXXXXXXXXXXXXXXX 120
              E RR+LR GLT LPQP NEYQIV Q               DMSD               
Sbjct:   471 EEARRSLRSGLTGLPQPKNEYQIVAQPPPEESEEPEEKIEEDMSDRIAREKAEEEARQQA 530

Query:   121 XXXKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRXXXXXXXX 180
                KRSKVLQR+LPRPP ASL +IRNSLL ADGDKSS VPPT IE AD+++R        
Sbjct:   531 LLKKRSKVLQRDLPRPPAASLAVIRNSLLSADGDKSSVVPPTPIEVADKMVREELLQLLE 590

Query:   181 HDNAKYPLDEKVAKKKKGNKRSANGPTAPIPVIEDFEEDELQESFTLLSD 230
             HDNAKYPLD+K A+KKKG K   N   + +  I+DF+E+ELQE+  ++ +
Sbjct:   591 HDNAKYPLDDK-AEKKKGAKNRTNRSASQVLAIDDFDENELQEADKMIKE 639

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IMP

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

ZFIN|ZDB-GENE-040426-821 cdc5l "CDC5 cell division cycle 5-like (S. pombe)" [Danio rerio (taxid:7955)]

 Score = 230 (86.0 bits), Expect = 4.1e-16, P = 4.1e-16
 Identities = 89/323 (27%), Positives = 143/323 (44%)

Query:     3 TPSATPG--GMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINED---LDMHDSAKLEQ 57
             TP  TP   G G TP  G+TP    +S GVTP  TP+RD+L+IN +   +D  D +   +
Sbjct:   411 TPFRTPSHTGEGLTPHGGLTPK---ASVGVTPGRTPLRDKLNINTEEGGVDYTDPS-FSK 466

Query:    58 RRQAELRRNLRLGLTSLPQPTNEYQIVVQXXXXXXXXXXXXXXX---DMSDXXXXXXXXX 114
               Q E R +LRLGL SLP P N+++IV+                   D ++         
Sbjct:   467 HMQRESREHLRLGLMSLPVPKNDFEIVLPENAEKELEETEVDESFVEDAAEIELRKQAVR 526

Query:   115 XXXXXXXXXKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRXX 174
                      +R   +QR+LPRP     E++  ++LR    +    P T ++QA+E+I+  
Sbjct:   527 DAEREKELRQRHTSVQRDLPRPS----EVVNETILRPHNVEP---PLTDLQQAEELIKRE 579

Query:   175 XXXXXXHDNAKYPLDEKVAKKKKGNKRSANGPTAPIPVIED--FE---EDELQESFTLLS 229
                   +D   +P  +  AKK KG   S+N     I  +E   +E   E+EL+++  LL 
Sbjct:   580 MITMIHYDCLHHPFSD--AKKTKGVNSSSNN-AEHISYLEKTPYEKVSEEELKKAGDLLL 636

Query:   230 DSRLNVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQK 289
                + V K      D       Q+       EC+  +      +  +R N L     +  
Sbjct:   637 QE-MEVVKHGMGHGDLSMEAYNQVWE-----ECYSQVLYLPGQSRYTRAN-LASKKDRID 689

Query:   290 ELERTLQQRYGDLSTELERISRL 312
              LE+ L+   G ++ E +R +++
Sbjct:   690 SLEKKLEMNRGHMTAEAKRAAKM 712

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|E1BWQ5 CDC5L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 195 (73.7 bits), Expect = 3.6e-12, P = 3.6e-12
 Identities = 81/323 (25%), Positives = 137/323 (42%)

Query:     3 TPSATP--GGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQ 60
             TP  TP  G  G TPR G+TP       G TP  TP+RD+L+IN +  M D +     +Q
Sbjct:   412 TPFRTPSQGQEGLTPRGGLTPKPVA---GTTPGRTPLRDKLNINPEEGMADYSDPSYAKQ 468

Query:    61 AEL--RRNLRLGLTSLPQPTNEYQIVVQXXXXXXXXX---XXXXXXDMSDXXXXXXXXXX 115
              E   R +LRLGL +LP P N+++IV+                   D +D          
Sbjct:   469 MERESREHLRLGLMALPAPKNDFEIVLPENAEKELEEPEVDEAFVEDTADIEARKQALRD 528

Query:   116 XXXXXXXXKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPP-TSIEQADEIIRXX 174
                     +  K +Q+ LPRP       +  ++LR      +  PP T +++++E+I+  
Sbjct:   529 AERAKELKRMHKAVQKNLPRPSE-----VNETVLRP----VNVEPPLTDLQRSEELIKKE 579

Query:   175 XXXXXXHDNAKYPLDEK-VAKKKKGNKRSANGPTAPIPV----IEDFEEDELQESFTLLS 229
                    D   +P  E+   KK KG     N       +     E F +++L+++  LL+
Sbjct:   580 MITMLHFDLLHHPFGEQPTGKKGKGPGFGTNNAEHMAYLEQNPYEKFSKEDLKKAQDLLA 639

Query:   230 DSRLNVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQK 289
                + V K+     +       Q+       EC+  +      +  +R N L     + +
Sbjct:   640 QE-MEVVKQGMGHGELSSEAYNQVWE-----ECYSQVLYLPGQSRYTRAN-LASKKDRIE 692

Query:   290 ELERTLQQRYGDLSTELERISRL 312
              LE+ L+   G ++TE +R +++
Sbjct:   693 SLEKRLEINRGHMTTEAKRAAKM 715

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

UNIPROTKB|E1C6A9 CDC5L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 195 (73.7 bits), Expect = 3.6e-12, P = 3.6e-12
 Identities = 81/323 (25%), Positives = 137/323 (42%)

Query:     3 TPSATP--GGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQ 60
             TP  TP  G  G TPR G+TP       G TP  TP+RD+L+IN +  M D +     +Q
Sbjct:   415 TPFRTPSQGQEGLTPRGGLTPKPVA---GTTPGRTPLRDKLNINPEEGMADYSDPSYAKQ 471

Query:    61 AEL--RRNLRLGLTSLPQPTNEYQIVVQXXXXXXXXX---XXXXXXDMSDXXXXXXXXXX 115
              E   R +LRLGL +LP P N+++IV+                   D +D          
Sbjct:   472 MERESREHLRLGLMALPAPKNDFEIVLPENAEKELEEPEVDEAFVEDTADIEARKQALRD 531

Query:   116 XXXXXXXXKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPP-TSIEQADEIIRXX 174
                     +  K +Q+ LPRP       +  ++LR      +  PP T +++++E+I+  
Sbjct:   532 AERAKELKRMHKAVQKNLPRPSE-----VNETVLRP----VNVEPPLTDLQRSEELIKKE 582

Query:   175 XXXXXXHDNAKYPLDEK-VAKKKKGNKRSANGPTAPIPV----IEDFEEDELQESFTLLS 229
                    D   +P  E+   KK KG     N       +     E F +++L+++  LL+
Sbjct:   583 MITMLHFDLLHHPFGEQPTGKKGKGPGFGTNNAEHMAYLEQNPYEKFSKEDLKKAQDLLA 642

Query:   230 DSRLNVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQK 289
                + V K+     +       Q+       EC+  +      +  +R N L     + +
Sbjct:   643 QE-MEVVKQGMGHGELSSEAYNQVWE-----ECYSQVLYLPGQSRYTRAN-LASKKDRIE 695

Query:   290 ELERTLQQRYGDLSTELERISRL 312
              LE+ L+   G ++TE +R +++
Sbjct:   696 SLEKRLEINRGHMTTEAKRAAKM 718

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000974 "Prp19 complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0071987 "WD40-repeat domain binding" evidence=IEA

UNIPROTKB|E2RLP4 CDC5L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 192 (72.6 bits), Expect = 7.6e-12, P = 7.6e-12
 Identities = 82/323 (25%), Positives = 140/323 (43%)

Query:     3 TPSATP--GGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHIN-ED--LDMHDSAKLEQ 57
             TP  TP  G  G TPR G TP    +S   TP  TP+RD+L+IN ED   D  D + ++Q
Sbjct:   411 TPFRTPSHGSEGLTPRSGTTPKPVINS---TPGRTPLRDKLNINPEDGMADYSDPSYVKQ 467

Query:    58 RRQAELRRNLRLGLTSLPQPTNEYQIVVQXXXXXXXXXXXXXXX---DMSDXXXXXXXXX 114
               + E R +LRLGL  LP P N+++IV+                   D +D         
Sbjct:   468 MER-ESREHLRLGLLGLPAPKNDFEIVLPENAEKELEDREIDDTYIEDAADVDARKQAIR 526

Query:   115 XXXXXXXXXKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPP-TSIEQADEIIRX 173
                      +  K +Q++LPRP   +  ++R   L  +       PP T +++++E+I+ 
Sbjct:   527 EAERVKEMKRMHKAVQKDLPRPSEVNETILRP--LNVE-------PPLTDLQKSEELIKK 577

Query:   174 XXXXXXXHDNAKYPLDEKVAKKKK----GNKRSANGPTAPIPVIEDFEEDELQESFTLLS 229
                    +D   +P +    KK K    G   S +         E F ++EL+++  +L 
Sbjct:   578 EMITMLHYDLLHHPYEPSGNKKGKTVGFGTNNSEHIAYLEHNPYEKFSKEELKKAQDVLV 637

Query:   230 DSRLNVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQK 289
                + V K+  +  +       Q+       EC+  +      +  +R N L     + +
Sbjct:   638 QE-MEVVKQGMSHGELSSEAYNQVWE-----ECYSQVLYLPGQSRYTRAN-LASKKDRIE 690

Query:   290 ELERTLQQRYGDLSTELERISRL 312
              LE+ L+   G ++TE +R +++
Sbjct:   691 SLEKRLEINRGHMTTEAKRAAKM 713

GO:0071987 "WD40-repeat domain binding" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000974 "Prp19 complex" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q99459 CDC5L "Cell division cycle 5-like protein" [Homo sapiens (taxid:9606)]

 Score = 192 (72.6 bits), Expect = 7.6e-12, P = 7.6e-12
 Identities = 82/323 (25%), Positives = 140/323 (43%)

Query:     3 TPSATP--GGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHIN-ED--LDMHDSAKLEQ 57
             TP  TP  G  G TPR G TP    +S   TP  TP+RD+L+IN ED   D  D + ++Q
Sbjct:   411 TPFRTPSNGAEGLTPRSGTTPKPVINS---TPGRTPLRDKLNINPEDGMADYSDPSYVKQ 467

Query:    58 RRQAELRRNLRLGLTSLPQPTNEYQIVVQXXXXXXXXXXXXXXX---DMSDXXXXXXXXX 114
               + E R +LRLGL  LP P N+++IV+                   D +D         
Sbjct:   468 MER-ESREHLRLGLLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIR 526

Query:   115 XXXXXXXXXKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPP-TSIEQADEIIRX 173
                      +  K +Q++LPRP   +  ++R   L  +       PP T +++++E+I+ 
Sbjct:   527 DAERVKEMKRMHKAVQKDLPRPSEVNETILRP--LNVE-------PPLTDLQKSEELIKK 577

Query:   174 XXXXXXXHDNAKYPLDEKVAKKKK----GNKRSANGPTAPIPVIEDFEEDELQESFTLLS 229
                    +D   +P +    KK K    G   S +         E F ++EL+++  +L 
Sbjct:   578 EMITMLHYDLLHHPYEPSGNKKGKTVGFGTNNSEHITYLEHNPYEKFSKEELKKAQDVLV 637

Query:   230 DSRLNVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQK 289
                + V K+  +  +       Q+       EC+  +      +  +R N L     + +
Sbjct:   638 QE-MEVVKQGMSHGELSSEAYNQVWE-----ECYSQVLYLPGQSRYTRAN-LASKKDRIE 690

Query:   290 ELERTLQQRYGDLSTELERISRL 312
              LE+ L+   G ++TE +R +++
Sbjct:   691 SLEKRLEINRGHMTTEAKRAAKM 713

GO:0003682 "chromatin binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003677 "DNA binding" evidence=NAS

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000974 "Prp19 complex" evidence=IDA

GO:0071987 "WD40-repeat domain binding" evidence=IDA

GO:0016607 "nuclear speck" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:1918952 Cdc5l "cell division cycle 5-like (S. pombe)" [Mus musculus (taxid:10090)]

 Score = 191 (72.3 bits), Expect = 9.9e-12, P = 9.9e-12
 Identities = 79/319 (24%), Positives = 135/319 (42%)

Query:     3 TPSATP--GGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHIN-ED--LDMHDSAKLEQ 57
             TP  TP  G  G TPR G TP    ++   TP  TP+RD+L+IN ED   D  D + ++Q
Sbjct:   411 TPFRTPSNGAEGLTPRSGTTPKPVTNA---TPGRTPLRDKLNINPEDGMADYSDPSYVKQ 467

Query:    58 RRQAELRRNLRLGLTSLPQPTNEYQIVVQXXXXXXXXXXXXXXX---DMSDXXXXXXXXX 114
               + E R +LRLGL  LP P N+++IV+                   D +D         
Sbjct:   468 MER-ESREHLRLGLLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIR 526

Query:   115 XXXXXXXXXKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPP-TSIEQADEIIRX 173
                      +  K +Q++LPRP   +  ++R   L  +       PP T +++++E+I+ 
Sbjct:   527 DAERVKEMKRMHKAVQKDLPRPSEVNETILRP--LNVE-------PPLTDLQKSEELIKK 577

Query:   174 XXXXXXXHDNAKYPLDEKVAKKKKGNKRSANGPTAPIPVIEDFEEDELQESFTLLSDSRL 233
                    +D   +P +    KK K N   A   +  I  +E    ++  +     +   L
Sbjct:   578 EMITMLHYDLLHHPYEPSGNKKGK-NVGFATNNSEHITYLEHSPYEKFSKEDLKKAQDAL 636

Query:   234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELER 293
              VQ+     +   H  +          EC+  +      +  +R N L     + + LE+
Sbjct:   637 -VQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPAQSRYTRAN-LASKKDRIESLEK 694

Query:   294 TLQQRYGDLSTELERISRL 312
              L+   G ++TE +R +++
Sbjct:   695 RLEINRGHMTTEAKRAAKM 713

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0000974 "Prp19 complex" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008380 "RNA splicing" evidence=ISO

GO:0016607 "nuclear speck" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

GO:0071987 "WD40-repeat domain binding" evidence=ISO

RGD|70892 Cdc5l "cell division cycle 5-like" [Rattus norvegicus (taxid:10116)]

 Score = 190 (71.9 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 79/319 (24%), Positives = 135/319 (42%)

Query:     3 TPSATP--GGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHIN-ED--LDMHDSAKLEQ 57
             TP  TP  G  G TPR G TP    ++   TP  TP+RD+L+IN ED   D  D + ++Q
Sbjct:   411 TPFRTPSNGAEGLTPRSGTTPKPVTNA---TPGRTPLRDKLNINPEDGMADYSDPSYVKQ 467

Query:    58 RRQAELRRNLRLGLTSLPQPTNEYQIVVQXXXXXXXXXXXXXXX---DMSDXXXXXXXXX 114
               + E R +LRLGL  LP P N+++IV+                   D +D         
Sbjct:   468 MER-ESREHLRLGLLGLPAPKNDFEIVLPENAEKELEEREMDDTYIEDAADVDARKQAIR 526

Query:   115 XXXXXXXXXKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPP-TSIEQADEIIRX 173
                      +  K +Q++LPRP   +  ++R   L  +       PP T +++++E+I+ 
Sbjct:   527 DAERVKEMKRMHKAVQKDLPRPSEVNETILRP--LNVE-------PPLTDLQKSEELIKK 577

Query:   174 XXXXXXXHDNAKYPLDEKVAKKKKGNKRSANGPTAPIPVIEDFEEDELQESFTLLSDSRL 233
                    +D   +P +    KK K N   A   +  I  +E    ++  +   L     +
Sbjct:   578 EMITMLHYDLLHHPYEPSGNKKGK-NVGFATNNSEHITYLEHSPYEKFSKE-DLKKAQDV 635

Query:   234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELER 293
              VQ+     +   H  +          EC+  +      +  +R N L     + + LE+
Sbjct:   636 LVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPAQSRYTRAN-LASKKDRIESLEK 694

Query:   294 TLQQRYGDLSTELERISRL 312
              L+   G ++TE +R +++
Sbjct:   695 RLEINRGHMTTEAKRAAKM 713

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA

GO:0000974 "Prp19 complex" evidence=ISO;ISS

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0008380 "RNA splicing" evidence=IDA

GO:0016607 "nuclear speck" evidence=ISO;IDA

GO:0019904 "protein domain specific binding" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

GO:0071987 "WD40-repeat domain binding" evidence=ISO;ISS

UNIPROTKB|Q2KJC1 CDC5L "Cell division cycle 5-like protein" [Bos taurus (taxid:9913)]

 Score = 189 (71.6 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 81/323 (25%), Positives = 140/323 (43%)

Query:     3 TPSATP--GGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHIN-ED--LDMHDSAKLEQ 57
             TP  TP  G  G TPR G TP    +S   TP  TP+RD+L+IN ED   D  D + ++Q
Sbjct:   411 TPFRTPSHGSEGLTPRSGTTPKPVINS---TPGRTPLRDKLNINPEDGMADYSDPSYVKQ 467

Query:    58 RRQAELRRNLRLGLTSLPQPTNEYQIVVQXXXXXXXXXXXXXXX---DMSDXXXXXXXXX 114
               + E R +LRLGL  LP P N+++IV+                   D +D         
Sbjct:   468 MER-ESREHLRLGLLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIR 526

Query:   115 XXXXXXXXXKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPP-TSIEQADEIIRX 173
                      +  K +Q++LPRP   +  ++R   L  +       PP T +++++E+I+ 
Sbjct:   527 DAERVKEMKRMHKAVQKDLPRPSEVNETILRP--LNVE-------PPLTDLQKSEELIKK 577

Query:   174 XXXXXXXHDNAKYPLDEKVAKKKK----GNKRSANGPTAPIPVIEDFEEDELQESFTLLS 229
                    +D   +P +    KK K    G   + +         E F ++EL+++  +L 
Sbjct:   578 EMITMLHYDLLHHPYEPSGNKKGKTVGFGTNNAEHIAYLEHNPYEKFSKEELKKAQDVLV 637

Query:   230 DSRLNVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQK 289
                + V K+  +  +       Q+       EC+  +      +  +R N L     + +
Sbjct:   638 QE-MEVVKQGMSHGELSSEAYNQVWE-----ECYSQVLYLPGQSRYTRAN-LASKKDRIE 690

Query:   290 ELERTLQQRYGDLSTELERISRL 312
              LE+ L+   G ++TE +R +++
Sbjct:   691 SLEKRLEINRGHMTTEAKRAAKM 713

GO:0000974 "Prp19 complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0071987 "WD40-repeat domain binding" evidence=ISS

GO:0016607 "nuclear speck" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

UNIPROTKB|F1RQS5 CDC5L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 189 (71.6 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 81/323 (25%), Positives = 140/323 (43%)

Query:     3 TPSATP--GGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHIN-ED--LDMHDSAKLEQ 57
             TP  TP  G  G TPR G TP    +S   TP  TP+RD+L+IN ED   D  D + ++Q
Sbjct:   412 TPFRTPSHGSEGLTPRSGTTPKPVINS---TPGRTPLRDKLNINPEDGMADYSDPSYVKQ 468

Query:    58 RRQAELRRNLRLGLTSLPQPTNEYQIVVQXXXXXXXXXXXXXXX---DMSDXXXXXXXXX 114
               + E R +LRLGL  LP P N+++IV+                   D +D         
Sbjct:   469 MER-ESREHLRLGLLGLPAPKNDFEIVLPENAEKELEDREVDDTYIEDAADVDARKQAIR 527

Query:   115 XXXXXXXXXKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPP-TSIEQADEIIRX 173
                      +  K +Q++LPRP   +  ++R   L  +       PP T +++++E+I+ 
Sbjct:   528 EAERVKEMKRMHKAVQKDLPRPSEVNETILRP--LNVE-------PPLTDLQKSEELIKK 578

Query:   174 XXXXXXXHDNAKYPLDEKVAKKKK----GNKRSANGPTAPIPVIEDFEEDELQESFTLLS 229
                    +D   +P +    KK K    G   + +         E F ++EL+++  +L 
Sbjct:   579 EMITMLHYDLLHHPYEPSGNKKGKPVGFGTNNAEHIAYLEHNPYEKFSKEELKKAQDVLV 638

Query:   230 DSRLNVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQK 289
                + V K+  +  +       Q+       EC+  +      +  +R N L     + +
Sbjct:   639 QE-MEVVKQGMSHGELSSEAYNQVWE-----ECYSQVLYLPGQSRYTRAN-LASKKDRIE 691

Query:   290 ELERTLQQRYGDLSTELERISRL 312
              LE+ L+   G ++TE +R +++
Sbjct:   692 SLEKRLEINRGHMTTEAKRAAKM 714

GO:0071987 "WD40-repeat domain binding" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000974 "Prp19 complex" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P92948	CDC5L_ARATH	No assigned EC number	0.7347	0.4561	0.2713	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	502
pfam11831	363	pfam11831, Myb_Cef, pre-mRNA splicing factor compo	2e-52

>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component

 Score =  181 bits (460), Expect = 2e-52
 Identities = 88/229 (38%), Positives = 133/229 (58%), Gaps = 28/229 (12%)

Query: 3   TPSATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINED--LDMHDSAKLEQRRQ 60
            P ATP    S   IG TP R GS +   P  TP RD+L IN++  +++ ++ + E+ R+
Sbjct: 68  NPLATPP-FRSGNGIGATPLRGGSGY--GPLRTPNRDKLSINDEAAMEVGETPREEKLRE 124

Query: 61  AELRRNLRLGLTSLPQPTNEYQIVVQPPA-EEDEEPEEKIEEDMSDRLAREKAEEEARQQ 119
            E + +L+ GL SLP+P NE+++ +     EE EE EE++EED +DR AR++A EEA++Q
Sbjct: 125 DEAKLSLKSGLASLPKPKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQ 184

Query: 120 ALLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRKELLKLL 179
             LR+RS+V+QR LPRP V  L ++R          S  VP T ++ A+++I KE+  L+
Sbjct: 185 EELRRRSQVIQRNLPRPSVLDLIVLR---------PSVNVPLTELDPAEKLINKEMALLI 235

Query: 180 EHDNAKYPLDEKVAKKKKGNKRSANGPTAPIPVIEDFEEDELQESFTLL 228
            HD  KYPL     K K                 EDF+++EL+E+  L+
Sbjct: 236 AHDALKYPLPGGKPKGKA-------------VPYEDFDDEELEEARKLI 271

This family is a region of the Myb-Related Cdc5p/Cef1 proteins, in fungi, and is part of the pre-mRNA splicing factor complex. Length = 363

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	502
PF11831	231	Myb_Cef: pre-mRNA splicing factor component; Inter	100.0
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	100.0
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	84.1
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	82.16

>PF11831 Myb_Cef: pre-mRNA splicing factor component; InterPro: IPR021786 This domain is functionally uncharacterised

Probab=100.00  E-value=5.7e-54  Score=418.21  Aligned_cols=201  Identities=42%  Similarity=0.697  Sum_probs=173.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCcccCCCCCCC---CCCCHHHHHHHHHHHHHHHHHhccCCCCC
Q 044525            1 MLTPSATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLD---MHDSAKLEQRRQAELRRNLRLGLTSLPQP   77 (502)
Q Consensus         1 l~TPfrtpg~~g~Tp~~g~TP~~~~~~~g~TP~rTPlRD~L~IN~~~~---~~~tPr~~K~rq~~~K~~LRsgLaSLPkP   77 (502)
                      |+|||||||+      +|+||++.+ ++|+||++||+||+|+||++++   +..||++.|+++.++|++||+||++||+|
T Consensus         5 ~~t~~r~~~~------~g~TP~~~~-~~g~tp~~TP~RD~l~IN~~~~~~~~~~tp~~~k~~~~~~k~~Lr~~LasLP~P   77 (231)
T PF11831_consen    5 LATPFRTPSG------VGATPRRNG-GPGQTPLRTPLRDKLNINPEDGMSSVGDTPRDEKARQKAAKSQLRAGLASLPKP   77 (231)
T ss_pred             ccCcccCCCC------CCcCCCCCC-CCCCCCCCCCCCccccCCccccccccccChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            6899999873      466666543 5678999999999999998653   24799999999999999999999999999


Q ss_pred             CCcceeecCCCCCCC-CCcchhhccChHHHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCcccchHHHHhhhhccCCCCC
Q 044525           78 TNEYQIVVQPPAEED-EEPEEKIEEDMSDRLAREKAEEEARQQALLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKS  156 (502)
Q Consensus        78 KNDfEIvLPEeeeE~-ee~e~~~EEDAADrDaR~qaereaeEe~elkRRSQVVQRgLPRP~~Vn~~~Lr~~L~k~~~~~s  156 (502)
                      +|||||+||++++++ ++.+..++|||+|||+|++++++++++++|+||||||||+||||+.||..+|++. .       
T Consensus        78 ~Nd~EI~lPe~e~~e~~~~~~~~eeDaad~d~r~~~~~~~~e~~e~~rRSqvvQR~LPRP~~v~~~~L~~~-~-------  149 (231)
T PF11831_consen   78 KNDYEIVLPEEEEEEDEEAEEEMEEDAADRDARERAEREEEEEKELKRRSQVVQRGLPRPSEVNESILRPA-E-------  149 (231)
T ss_pred             CCeeeeecCCcccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHccCCCCCcccHHHHHhh-c-------
Confidence            999999999987443 3444567999999999999999999999999999999999999999999998843 1       


Q ss_pred             CCCCCCChHHHHHHHHHHHHHHHHhhhhcCCCchhhhhhhcccccccCCCCCCCCCccccCHHhHHHHHHHHHh
Q 044525          157 SFVPPTSIEQADEIIRKELLKLLEHDNAKYPLDEKVAKKKKGNKRSANGPTAPIPVIEDFEEDELQESFTLLSD  230 (502)
Q Consensus       157 ~~~plTdl~~aEeLI~~Em~~LL~hDa~kyPlpg~~~~~k~~~~e~a~~~~~~l~~Le~fsedeL~eA~~lI~~  230 (502)
                       ...+++++.+++||++||+.||+||+++||++|+++.             ...+.|++|++++|..|+++|..
T Consensus       150 -~~~~~~~~~ae~lI~~Em~~Ll~~D~~~~P~~~~~~~-------------~~~~~~e~~~~e~l~~A~~li~~  209 (231)
T PF11831_consen  150 -NPALTELDEAEELIKQEMATLLKHDAIKYPVPGGKPK-------------GKAPPYEDFSDEDLAEARELIQA  209 (231)
T ss_pred             -ccCCcchHHHHHHHHHHHHHHHHhHhhhCCCCCCCCC-------------CCCCCcCCCCHHHHHHHHHHHHH
Confidence             1235668999999999999999999999999998633             22557899999999999999997

This domain is found in bacteria. This presumed domain is typically between 73 to 279 amino acids in length.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.5e-32  Score=288.54  Aligned_cols=198  Identities=37%  Similarity=0.533  Sum_probs=137.6

Q ss_pred             CCCcCCcccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCCCCcceeecCCCCCCCCCcchhhccChHHHHHHHHH
Q 044525           33 KGTPIRDELHINEDLDMHDSAKLEQRRQAELRRNLRLGLTSLPQPTNEYQIVVQPPAEEDEEPEEKIEEDMSDRLAREKA  112 (502)
Q Consensus        33 ~rTPlRD~L~IN~~~~~~~tPr~~K~rq~~~K~~LRsgLaSLPkPKNDfEIvLPEeeeE~ee~e~~~EEDAADrDaR~qa  112 (502)
                      +++|  |+ +||++.+|+...+           .||.||++||+||||||||+++++.|         +|          
T Consensus       382 ~~~p--d~-~iN~e~~~~~~~~-----------~Lr~~la~LP~PKNDfEiv~~~dE~E---------~~----------  428 (617)
T KOG0050|consen  382 CRGP--DE-RINEESGMALKSR-----------SLRQGLASLPSPKNDFEIVLSEDEKE---------ED----------  428 (617)
T ss_pred             cCCC--cc-cCChhhhhhhHHH-----------HHHHHHhcCCCCCCcceeecCcccch---------hh----------
Confidence            4678  99 9999988754322           39999999999999999999543322         11          


Q ss_pred             HHHHHHHHHHHhhhHHHhhcCCCCcccchHHHHhhhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhhhcCCCc-hh
Q 044525          113 EEEARQQALLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRKELLKLLEHDNAKYPLD-EK  191 (502)
Q Consensus       113 ereaeEe~elkRRSQVVQRgLPRP~~Vn~~~Lr~~L~k~~~~~s~~~plTdl~~aEeLI~~Em~~LL~hDa~kyPlp-g~  191 (502)
                      ++.+++.+.+++|||||||+||||+.|| .++|++|                          |+.||+||..+||.- ..
T Consensus       429 e~~Ae~~~~~~~RsqviqrdlprP~~~n-~~~R~sl--------------------------mi~ll~~d~~~~P~~~d~  481 (617)
T KOG0050|consen  429 ERIAEEKEFMKRRSQVIQRDLPRPPSVN-DAPRVSL--------------------------MIVLLAYDTLNYPPFKDF  481 (617)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCchhh-hhhhhHH--------------------------HHHHHHhcccCCCCCCCC
Confidence            4455578889999999999999999999 8777641                          778888888888821 11


Q ss_pred             hh----hh----hccccccc----------------CCC---CCCCCCccccCHHhHHH-------HHHHHHhhhc---c
Q 044525          192 VA----KK----KKGNKRSA----------------NGP---TAPIPVIEDFEEDELQE-------SFTLLSDSRL---N  234 (502)
Q Consensus       192 ~~----~~----k~~~~e~a----------------~~~---~~~l~~Le~fsedeL~e-------A~~lI~~lKL---G  234 (502)
                      ..    .+    +..+.++.                .++   ...+.+-.+-.+..|+.       |.+|-+++++   |
T Consensus       482 s~eel~~a~~llk~e~~~l~~dd~q~~~ec~s~~~~l~~~~~~~~~~~~~d~ae~~le~m~~~ak~~~klekKlk~~~~g  561 (617)
T KOG0050|consen  482 SQEELDNAYDLLKQEAEELVSDDYQFLKECLSRMQYLGSTYTRIQVATAEDPAEKELENMAKKAKRAEKLEKKLKHLLGG  561 (617)
T ss_pred             CHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            00    00    00000000                000   01111111112333321       1222222222   9


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525          235 VQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKEL  291 (502)
Q Consensus       235 YQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eR  291 (502)
                      ||.| .+|+|+|.++|.+|+...++|.||+.|..+|..|+++|+++|+++|.+|+.+
T Consensus       562 yq~r-~~l~kq~~~~~~~le~~~~e~~~f~~l~~qE~~Al~~R~~~lq~ev~~q~~~  617 (617)
T KOG0050|consen  562 YQQR-EMLIKQIHHTLKALEEGQRELYTFEFLYRQEIRALPGRLERLQEEVNKQQEI  617 (617)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHhhccC
Confidence            9999 9999999999999999999999999999999999999999999999998753

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=84.10  E-value=29  Score=31.84  Aligned_cols=82  Identities=16%  Similarity=0.200  Sum_probs=63.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525          234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLI  313 (502)
Q Consensus       234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v  313 (502)
                      .++.+...|...=..+.++|.....+.+..        .+...++..|+.++..+..|...+=+.|++-.++.++|+.-|
T Consensus        34 ~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~--------~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv  105 (120)
T PF12325_consen   34 SLQEELARLEAERDELREEIVKLMEENEEL--------RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADV  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            666666666666666666666655443333        356688999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 044525          314 AERREQAQKA  323 (502)
Q Consensus       314 ~~~~~~~~~~  323 (502)
                      ...+...+.|
T Consensus       106 ~DlK~myr~Q  115 (120)
T PF12325_consen  106 QDLKEMYREQ  115 (120)
T ss_pred             HHHHHHHHHH
Confidence            8888776665

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=82.16  E-value=54  Score=32.22  Aligned_cols=88  Identities=15%  Similarity=0.269  Sum_probs=72.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525          234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLI  313 (502)
Q Consensus       234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v  313 (502)
                      ..+..-..|..-+..+-.+.+...-.|..|..... --..+..|+..+..++..+.--...|..+|..+..|+++|....
T Consensus        52 ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~-~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf  130 (201)
T PF13851_consen   52 EISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQ-SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF  130 (201)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788888888888888888888888888876553 45567889999999999999999999999999999999998775


Q ss_pred             HHHHHHHHH
Q 044525          314 AERREQAQK  322 (502)
Q Consensus       314 ~~~~~~~~~  322 (502)
                      +..-...++
T Consensus       131 ~~~i~evqQ  139 (201)
T PF13851_consen  131 ESAIQEVQQ  139 (201)
T ss_pred             HHHHHHHHH
Confidence            544443333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	502
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 42/298 (14%), Positives = 99/298 (33%), Gaps = 80/298 (26%)

Query: 34  GTPIRDELHINEDLDMHDSAKLEQRRQ--------AELRRNLRLGLTSLPQ----PTNEY 81
              IRD L   ++    +  KL    +        AE R+     L+  P     PT   
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR-LSVFPPSAHIPTILL 392

Query: 82  QIVVQPPAEEDEEPEEKIEEDMSDRLAREKAEEEA-----RQQALLRKRSKVLQRELPRP 136
            ++         +    + +     L  ++ +E           L  K     +  L R 
Sbjct: 393 SLIWF--DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN--EYALHRS 448

Query: 137 PVASLELIRNSLLRADGDKSSFVPP--------------TSIEQADEIIRKELLKLLEHD 182
            V    + +        D    +PP               +IE  + +    L +++   
Sbjct: 449 IVDHYNIPKTF------DSDDLIPPYLDQYFYSHIGHHLKNIEHPERM---TLFRMV--- 496

Query: 183 NAKYPLDEK-VAKKKKGNKRSANGPTAPIPVIEDFE--EDELQES---FTLLSDSRLN-V 235
              + LD + + +K + +  + N   + +  ++  +  +  + ++   +  L ++ L+ +
Sbjct: 497 ---F-LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552

Query: 236 QKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELER 293
            K  ENL    ++ + +           +AL  ++          ++E+  KQ  ++R
Sbjct: 553 PKIEENLICSKYTDLLR-----------IALMAED--------EAIFEEAHKQ--VQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 6e-05
 Identities = 35/215 (16%), Positives = 68/215 (31%), Gaps = 69/215 (32%)

Query: 101 EDMSDRLAREKAEEEARQQALLRKRSKVLQRELPR------PPVASL--ELIRNSLLRAD 152
           +  S  L  ++ +       LL K      ++LPR      P   S+  E IR+ L   D
Sbjct: 292 DHHSMTLTPDEVKS------LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 153 GDKSSFVPPTSIEQADEIIRKELLKLLEHDNAKYPLDEKVAKKKKGNKRSANGPTAPIPV 212
                                         N K+   +K+       + S          
Sbjct: 346 ------------------------------NWKHVNCDKLTTI---IESS---------- 362

Query: 213 IEDFEEDELQESFTLLSDSRLNVQ---KRAENL-RDQIHSTVKQMETAGTELECFLALQK 268
           +   E  E ++ F  LS    +          +  D I S V  +     +L  +  ++K
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV---NKLHKYSLVEK 419

Query: 269 QEQLAASSRINGLWEDVQKQ----KELERTLQQRY 299
           Q +  ++  I  ++ +++ +      L R++   Y
Sbjct: 420 QPK-ESTISIPSIYLELKVKLENEYALHRSIVDHY 453

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 62/350 (17%), Positives = 115/350 (32%), Gaps = 29/350 (8%)

Query: 28   FGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQAELRRNLRLGLTSLPQPTNEYQIVVQP 87
            F + P     R E  +    +     K  Q++     + L    T L +  N  Q  +Q 
Sbjct: 844  FXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQA 903

Query: 88   PAEEDEEPEEKIEEDMSDRLARE--------KAEEEARQQALLRKRSKVLQRELP--RPP 137
              E   E EE      + +   E        + EEE  +   L+   K +Q+++      
Sbjct: 904  ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ 963

Query: 138  VASLELIRNSLLRADGDKSSFV--PPTSIEQADEIIRK--ELLKLLEHDNAKYPLDEKVA 193
            +   E  R  L          +      I   ++   K  +  KLLE   +    +    
Sbjct: 964  LEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE 1023

Query: 194  KKKKGNKRSANGPTAPIPVIEDFEE--DELQESFTLLSDSRLNVQKRAENLRDQI---HS 248
            ++K  N                 E    EL+        SR  ++K    L  +    H 
Sbjct: 1024 EEKAKNLTKLK---------NKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHE 1074

Query: 249  TVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELER 308
             + +++    EL+  LA +++E  AA +R+           +  R L+    DL  +LE 
Sbjct: 1075 QIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLES 1134

Query: 309  ISRLIAERREQAQKAAEEKRAL-ELAEAQATANQAAEQVSEASESLPSEE 357
                  +  +Q +  +EE  AL    E         +++  +      ++
Sbjct: 1135 EKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00