Citrus Sinensis ID: 044569

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110------
Protein Sequence
SARTAPEKTEAQNTERERRSTEWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSNGFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPPRTRFRCGRICLR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccEEcccccccHHHHHHHHcccccccEEEEEEEEcccccccccccEEEEcccccEEEEEcccccEEEcccEEEc
Secondary Structure Prediction (SSPRO)
cccccccccHHcccHHHccccHHEEHHHHHHHcccccEEEccccHcccccccHcHHHHHHEcccccccEEEEEEEEcccccccccccEEEEcccccEEEEEccccccEcccEEEcc
Coil and Loop (DISEMBL)
sartapekteaqnterERRSTEWEIRSEITEaqngkqaagnlpikllmpnTFQNIKEIAAktipsngfevdeartlnkggkkkkwggllnakpdykkayvtspprtrfrcgriclr
Flexible Loop (DISEMBL)
sartapekteaqntererrsteweirseiteaqngkqaagnLPIKLLMPNTFQNIKEIAaktipsngfevdeartlnkggkkkkwggllnakpdykkayvtspprtrfrcgriclr
Low Complexity Region (SEG)
SARTAPEKTEAQNTERERRSTEWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSNGFEVDEARTLNkggkkkkwggLLNAKPDYKKAYVTSPPRTRFRCGRICLR
Disordered region (IsUnstruct)
*****************************************LPIKLLMPNTFQNIKEIAAK*******************************************************
Disordered Region (DISOPRED)
****************************************NLPIKLLMPNTFQNIKEIAAKTIPSNGFEVDEARTLN********GGLLNAKPDYKKAYVTSPPRTRFRCGRICLR
Disordered Region (DISEMBL)
***********************EIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSNGFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPPRTRFRCGRICLR
Disordered Region (DISPRO)
*********************EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSNGFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPPRTRFRCGRICLR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
SARTAPEKTEAQNTERERRSTEWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSNGFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPPRTRFRCGRICLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
356567706	176	PREDICTED: uncharacterized protein LOC10	0.534	0.352	0.653	4e-17
147784232	480	hypothetical protein VITISV_012657 [Viti	0.525	0.127	0.635	1e-16
359497264	170	PREDICTED: uncharacterized protein LOC10	0.525	0.358	0.635	3e-16
255580880	174	RNA binding protein, putative [Ricinus c	0.534	0.356	0.626	5e-16
449438835	174	PREDICTED: 50S ribosomal protein L23-lik	0.534	0.356	0.626	6e-16
77999307	188	ribosomal protein L23 family protein [So	0.525	0.324	0.621	2e-15
224083685	177	predicted protein [Populus trichocarpa]	0.534	0.350	0.6	7e-15
357463337	258	50S ribosomal protein L23 [Medicago trun	0.525	0.236	0.567	1e-13
217075578	208	unknown [Medicago truncatula]	0.525	0.293	0.567	2e-13
294461841	164	unknown [Picea sitchensis]	0.534	0.378	0.52	1e-12

>gi|356567706|ref|XP_003552058.1| PREDICTED: uncharacterized protein LOC100800404 [Glycine max]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 52/75 (69%), Gaps = 13/75 (17%)

Query: 40  GNLPIKLLMPNTFQNIKEIAAKTIPS-------------NGFEVDEARTLNKGGKKKKWG 86
            NLPIKLLMPN+F NI EIA KTIPS              GF+VD+ RTLN  GKKKK G
Sbjct: 13  ANLPIKLLMPNSFTNIHEIALKTIPSATKIEIKRVLQSLYGFDVDKVRTLNMEGKKKKRG 72

Query: 87  GLLNAKPDYKKAYVT 101
           GLL AKPDYKKAYVT
Sbjct: 73  GLLIAKPDYKKAYVT 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784232|emb|CAN63891.1| hypothetical protein VITISV_012657 [Vitis vinifera]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/74 (63%), Positives = 53/74 (71%), Gaps = 13/74 (17%)

Query: 41  NLPIKLLMPNTFQNIKEIAAKTIPS-------------NGFEVDEARTLNKGGKKKKWGG 87
           NLPIKLLMP++F NIKEIA KT+PS              GFEV++ RTLN  GKKKK GG
Sbjct: 323 NLPIKLLMPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVRTLNMEGKKKKRGG 382

Query: 88  LLNAKPDYKKAYVT 101
           LL AKPDYKKAY+T
Sbjct: 383 LLIAKPDYKKAYIT 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497264|ref|XP_002270942.2| PREDICTED: uncharacterized protein LOC100245960 [Vitis vinifera] gi|296084744|emb|CBI25888.3| unnamed protein product [Vitis vinifera]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/74 (63%), Positives = 53/74 (71%), Gaps = 13/74 (17%)

Query: 41  NLPIKLLMPNTFQNIKEIAAKTIPS-------------NGFEVDEARTLNKGGKKKKWGG 87
           NLPIKLLMP++F NIKEIA KT+PS              GFEV++ RTLN  GKKKK GG
Sbjct: 14  NLPIKLLMPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVRTLNMEGKKKKRGG 73

Query: 88  LLNAKPDYKKAYVT 101
           LL AKPDYKKAY+T
Sbjct: 74  LLIAKPDYKKAYIT 87

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580880|ref|XP_002531259.1| RNA binding protein, putative [Ricinus communis] gi|223529144|gb|EEF31123.1| RNA binding protein, putative [Ricinus communis]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/75 (62%), Positives = 50/75 (66%), Gaps = 13/75 (17%)

Query: 40  GNLPIKLLMPNTFQNIKEIAAKTIPS-------------NGFEVDEARTLNKGGKKKKWG 86
            NLPIKLLMP TF NI+E A KTIPS              GFEVD+ RTLN  GKKKK G
Sbjct: 13  ANLPIKLLMPKTFNNIEEFALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRG 72

Query: 87  GLLNAKPDYKKAYVT 101
           G L AKPDYKKAY+T
Sbjct: 73  GFLAAKPDYKKAYIT 87

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438835|ref|XP_004137193.1| PREDICTED: 50S ribosomal protein L23-like [Cucumis sativus] gi|449483270|ref|XP_004156540.1| PREDICTED: 50S ribosomal protein L23-like isoform 1 [Cucumis sativus] gi|449483272|ref|XP_004156541.1| PREDICTED: 50S ribosomal protein L23-like isoform 2 [Cucumis sativus]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/75 (62%), Positives = 51/75 (68%), Gaps = 13/75 (17%)

Query: 40  GNLPIKLLMPNTFQNIKEIAAKTIPS-------------NGFEVDEARTLNKGGKKKKWG 86
            NLPIKLLMP +F NI EIA KTIPS              GFEVD+ +TLN  GKKKK G
Sbjct: 13  ANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRG 72

Query: 87  GLLNAKPDYKKAYVT 101
           G+L AKPDYKKAYVT
Sbjct: 73  GILIAKPDYKKAYVT 87

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77999307|gb|ABB17000.1| ribosomal protein L23 family protein [Solanum tuberosum]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/74 (62%), Positives = 52/74 (70%), Gaps = 13/74 (17%)

Query: 41  NLPIKLLMPNTFQNIKEIAAKTIPS-------------NGFEVDEARTLNKGGKKKKWGG 87
           NLPIKLLMP++F NI EI+ KTIPS              GFEV++ +TLN  GKKKK GG
Sbjct: 14  NLPIKLLMPSSFSNITEISLKTIPSASKIEIKRVLESLYGFEVEKVQTLNMDGKKKKRGG 73

Query: 88  LLNAKPDYKKAYVT 101
           LL AKPDYKKAYVT
Sbjct: 74  LLIAKPDYKKAYVT 87

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083685|ref|XP_002307085.1| predicted protein [Populus trichocarpa] gi|222856534|gb|EEE94081.1| predicted protein [Populus trichocarpa]

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 49/75 (65%), Gaps = 13/75 (17%)

Query: 40  GNLPIKLLMPNTFQNIKEIAAKTIPS-------------NGFEVDEARTLNKGGKKKKWG 86
            NLPIKLLMP T+ NI EIA KTIPS              GF+V++  TLN  GKKKK G
Sbjct: 13  ANLPIKLLMPTTYTNISEIALKTIPSASKIEIKRVLESLYGFDVEKVSTLNMEGKKKKRG 72

Query: 87  GLLNAKPDYKKAYVT 101
           G L AKPDYKKAYVT
Sbjct: 73  GFLIAKPDYKKAYVT 87

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463337|ref|XP_003601950.1| 50S ribosomal protein L23 [Medicago truncatula] gi|355490998|gb|AES72201.1| 50S ribosomal protein L23 [Medicago truncatula]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 50/74 (67%), Gaps = 13/74 (17%)

Query: 41  NLPIKLLMPNTFQNIKEIAAKTIPS-------------NGFEVDEARTLNKGGKKKKWGG 87
           NLPIKLL+P  F +I EIA KTIPS              GF+V++ RTLN  GKKKK GG
Sbjct: 14  NLPIKLLLPTNFTDIHEIALKTIPSASKIEIKRVLESLYGFDVEKVRTLNMDGKKKKRGG 73

Query: 88  LLNAKPDYKKAYVT 101
           ++ AKPDYKKA+VT
Sbjct: 74  IVIAKPDYKKAFVT 87

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075578|gb|ACJ86149.1| unknown [Medicago truncatula]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 50/74 (67%), Gaps = 13/74 (17%)

Query: 41  NLPIKLLMPNTFQNIKEIAAKTIPS-------------NGFEVDEARTLNKGGKKKKWGG 87
           NLPIKLL+P  F +I EIA KTIPS              GF+V++ RTLN  GKKKK GG
Sbjct: 14  NLPIKLLLPTNFTDIHEIALKTIPSASKIEIKRVLESLYGFDVEKVRTLNMDGKKKKRGG 73

Query: 88  LLNAKPDYKKAYVT 101
           ++ AKPDYKKA+VT
Sbjct: 74  IVIAKPDYKKAFVT 87

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294461841|gb|ADE76478.1| unknown [Picea sitchensis]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 13/75 (17%)

Query: 40  GNLPIKLLMPNTFQNIKEIAAKTIPS-------------NGFEVDEARTLNKGGKKKKWG 86
            NLP+KL+MP++ +NIKE+A KT+PS              G EV++ +TLN  GKKK+ G
Sbjct: 13  ANLPLKLVMPSSRENIKEVAFKTVPSASKIEIKRVLESLYGLEVEKVQTLNMQGKKKRRG 72

Query: 87  GLLNAKPDYKKAYVT 101
           G++ AKPDYKKAYVT
Sbjct: 73  GIVYAKPDYKKAYVT 87

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
TAIR|locus:2140030	178	AT4G39880 [Arabidopsis thalian	0.525	0.342	0.486	9.7e-09

TAIR|locus:2140030 AT4G39880 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 36/74 (48%), Positives = 39/74 (52%)

Query:    41 NLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNXXXXXXXXXX 87
             NLPIKLLMP    NI E A KTIPS              GF+V++  TLN          
Sbjct:    14 NLPIKLLMPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVNTLNMDGKKKKRGG 73

Query:    88 LLNAKPDYKKAYVT 101
             LL AK DYKKAYVT
Sbjct:    74 LLIAKADYKKAYVT 87


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.128   0.364    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      116       106   0.00091  102 3  11 23  0.47    30
                                                     29  0.39    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  546 (58 KB)
  Total size of DFA:  113 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.75u 0.11s 11.86t   Elapsed:  00:00:00
  Total cpu time:  11.75u 0.11s 11.86t   Elapsed:  00:00:00
  Start:  Fri May 10 00:14:52 2013   End:  Fri May 10 00:14:52 2013

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	116
PRK05738	92	PRK05738, rplW, 50S ribosomal protein L23; Reviewe	2e-05
COG0089	94	COG0089, RplW, Ribosomal protein L23 [Translation,	9e-04

>gnl|CDD|235586 PRK05738, rplW, 50S ribosomal protein L23; Reviewed

 Score = 39.7 bits (94), Expect = 2e-05
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 67  GFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
           G +V+   TLN  GK K++G  +  + D+KKA VT
Sbjct: 45  GVKVESVNTLNVKGKTKRFGRRIGKRSDWKKAIVT 79

Length = 92

>gnl|CDD|223167 COG0089, RplW, Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]

 Score = 35.3 bits (82), Expect = 9e-04
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 67  GFEVDEARTLN-KGGKKKKWGGLLNAKPDYKKAYVTSPP 104
           G +V++  TLN KG  K+     +  + DYKKAYVT   
Sbjct: 46  GVKVEKVNTLNTKGKTKRAGVKRIGLRKDYKKAYVTLKE 84

Length = 94

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	116
CHL00030	93	rpl23 ribosomal protein L23	99.9
PRK05738	92	rplW 50S ribosomal protein L23; Reviewed	99.88
PF00276	91	Ribosomal_L23: Ribosomal protein L23; InterPro: IP	99.86
PRK12280	158	rplW 50S ribosomal protein L23; Reviewed	99.84
COG0089	94	RplW Ribosomal protein L23 [Translation, ribosomal	99.84
PRK14548	84	50S ribosomal protein L23P; Provisional	99.58
TIGR03636	77	L23_arch archaeal ribosomal protein L23. This mode	99.54
PTZ00191	145	60S ribosomal protein L23a; Provisional	99.46
KOG4089	165	consensus Predicted mitochondrial ribosomal protei	98.65
KOG1751	157	consensus 60s ribosomal protein L23 [Translation,	97.26

>CHL00030 rpl23 ribosomal protein L23

Probab=99.90  E-value=8.5e-24  Score=148.73  Aligned_cols=76  Identities=16%  Similarity=0.137  Sum_probs=69.9

Q ss_pred             eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569           22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL   88 (116)
Q Consensus        22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~   88 (116)
                      +++.+|.+||++...               . +.|+|+|+|+++|             ||+|.+|||++++||.||+|++
T Consensus         2 ~iI~~PivTEKs~~l---------------~-e~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k~kr~~~~   65 (93)
T CHL00030          2 DGIKYPVFTDKSIRL---------------L-EKNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRKKRRMGPI   65 (93)
T ss_pred             ceeccceeCHHHHHh---------------h-HCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCCccccCCc
Confidence            357789999999887               5 5699999999999             9999999999999999999999


Q ss_pred             eeecCCeeEEEEEcCCCCEEeeeee
Q 044569           89 LNAKPDYKKAYVTSPPRTRFRCGRI  113 (116)
Q Consensus        89 ~Gk~~~yKKAyVTL~~G~~Idf~~~  113 (116)
                      .|++++||||||||++|++|||-..
T Consensus        66 ~G~~~~~KKAiVtL~~g~~I~~~~~   90 (93)
T CHL00030         66 MGHKMHYKRMIITLQPGYSIPLFRE   90 (93)
T ss_pred             ccccCCcEEEEEEcCCcCEeccccc
Confidence            9999999999999999999998643

>PRK05738 rplW 50S ribosomal protein L23; Reviewed

Probab=99.88  E-value=9.4e-23  Score=142.34  Aligned_cols=74  Identities=27%  Similarity=0.348  Sum_probs=69.7

Q ss_pred             eEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCee
Q 044569           23 WEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGLL   89 (116)
Q Consensus        23 ~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~~   89 (116)
                      +++.|.+||++...               .++.|+|+|.|+++|             ||+|.+|||++++||.||+|+..
T Consensus         3 ii~~P~~TEKs~~~---------------~e~~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~kr~~~~~   67 (92)
T PRK05738          3 VIKRPVITEKSTLL---------------MEKQNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRFGRRI   67 (92)
T ss_pred             cccccccCHHHHHh---------------HHhCCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCceeeecccc
Confidence            57789999999887               677899999999999             99999999999999999999999


Q ss_pred             eecCCeeEEEEEcCCCCEEeee
Q 044569           90 NAKPDYKKAYVTSPPRTRFRCG  111 (116)
Q Consensus        90 Gk~~~yKKAyVTL~~G~~Idf~  111 (116)
                      |++++||||||||++|++|||-
T Consensus        68 g~~~~~KKA~VtL~~g~~i~~~   89 (92)
T PRK05738         68 GKRSDWKKAIVTLAEGQKIDFF   89 (92)
T ss_pred             cccCCcEEEEEEcCCCCEEecc
Confidence            9999999999999999999984

>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.86  E-value=3e-22  Score=138.98  Aligned_cols=75  Identities=28%  Similarity=0.325  Sum_probs=67.0

Q ss_pred             eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569           22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL   88 (116)
Q Consensus        22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~   88 (116)
                      ++++.|.+||++...               .++.|+|+|+|+++|             ||+|.+|||+++.||.+|.|+.
T Consensus         2 ~ii~~p~iTeKs~~~---------------~~~~n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~   66 (91)
T PF00276_consen    2 DIIKKPVITEKSMKL---------------LENPNQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKF   66 (91)
T ss_dssp             TTEEEE--SHHHHHH---------------HHHSSEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSC
T ss_pred             CEeecceecHhHHHh---------------hhcCCEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCc
Confidence            467889999998887               778899999999999             9999999999999999999999


Q ss_pred             eeecCCeeEEEEEcCCCCEEeee
Q 044569           89 LNAKPDYKKAYVTSPPRTRFRCG  111 (116)
Q Consensus        89 ~Gk~~~yKKAyVTL~~G~~Idf~  111 (116)
                      .|++++||||||+|++|+.||+.
T Consensus        67 ~g~~~~~KKaiVtL~~~~~i~~~   89 (91)
T PF00276_consen   67 VGKTKDYKKAIVTLKEGDKIPLF   89 (91)
T ss_dssp             EEEE-EEEEEEEEESTTSCHHHH
T ss_pred             cccCCCcEEEEEEeCCCCccccc
Confidence            99999999999999999999874

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....

>PRK12280 rplW 50S ribosomal protein L23; Reviewed

Probab=99.84  E-value=2.1e-21  Score=147.98  Aligned_cols=75  Identities=21%  Similarity=0.137  Sum_probs=68.4

Q ss_pred             eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569           22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL   88 (116)
Q Consensus        22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~   88 (116)
                      +++++|.+||++..+               . +.|+|+|.|+++|             ||+|.+|||+|++||.||+|++
T Consensus         5 ~iIk~PviTEKs~~l---------------~-e~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K~KR~g~~   68 (158)
T PRK12280          5 EVIKKPILTEKSYSL---------------M-SKNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKKPKRLGRF   68 (158)
T ss_pred             hhhhccccCHHHHhh---------------h-hCCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCcccccCCc
Confidence            467789999998776               4 4599999999999             9999999999999999999999


Q ss_pred             eeecCCeeEEEEEcCCCCEEeeee
Q 044569           89 LNAKPDYKKAYVTSPPRTRFRCGR  112 (116)
Q Consensus        89 ~Gk~~~yKKAyVTL~~G~~Idf~~  112 (116)
                      .|++++||||||||++|++|||-.
T Consensus        69 ~G~~~~~KKAiVtL~~g~~I~~f~   92 (158)
T PRK12280         69 PGFTNSYKKAYVTLAEGYSINLFP   92 (158)
T ss_pred             ccccCCcEEEEEECCCCCEeeccC
Confidence            999999999999999999999743

>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=2.8e-21  Score=136.79  Aligned_cols=76  Identities=26%  Similarity=0.276  Sum_probs=69.7

Q ss_pred             eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCC-
Q 044569           22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGG-   87 (116)
Q Consensus        22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~-   87 (116)
                      .++.+|.+||++...               +++.|+|+|.|+++|             ||+|.+|||+|++||.||.+. 
T Consensus         3 dvI~~PvvTEKa~~l---------------~~~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k~KR~~~k   67 (94)
T COG0089           3 DVIKSPVVTEKAMLL---------------MEKENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKTKRAGVK   67 (94)
T ss_pred             chhhcceecHHHHHh---------------HhhCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCcceEEecc
Confidence            456788999999888               556799999999999             999999999999999999988 


Q ss_pred             eeeecCCeeEEEEEcCCCCEEeeee
Q 044569           88 LLNAKPDYKKAYVTSPPRTRFRCGR  112 (116)
Q Consensus        88 ~~Gk~~~yKKAyVTL~~G~~Idf~~  112 (116)
                      +.|.+++||||||+|++|++||+-+
T Consensus        68 ~~G~~~~~kka~V~l~~G~~i~~~~   92 (94)
T COG0089          68 RIGLRKDYKKAYVTLKEGQSIDFFG   92 (94)
T ss_pred             ccccCcccceeEEEccCCCEEeecc
Confidence            8999999999999999999999854

>PRK14548 50S ribosomal protein L23P; Provisional

Probab=99.58  E-value=1.9e-15  Score=104.76  Aligned_cols=57  Identities=18%  Similarity=0.088  Sum_probs=52.2

Q ss_pred             eEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCee
Q 044569           23 WEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGLL   89 (116)
Q Consensus        23 ~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~~   89 (116)
                      ++.+|.+||++...               .++.|+|+|.|+++|             ||+|.+|||++++          
T Consensus         4 iI~~PviTEK~~~~---------------~e~~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~----------   58 (84)
T PRK14548          4 IIKYPLVTEKAMNL---------------IEKENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP----------   58 (84)
T ss_pred             chhccccCHHHHHH---------------HHhCCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC----------
Confidence            57789999999888               777899999999999             9999999999997          


Q ss_pred             eecCCeeEEEEEcCCCCE
Q 044569           90 NAKPDYKKAYVTSPPRTR  107 (116)
Q Consensus        90 Gk~~~yKKAyVTL~~G~~  107 (116)
                         ++||||||+|++|++
T Consensus        59 ---~~~KKA~V~L~~g~~   73 (84)
T PRK14548         59 ---KGEKKAYVKLAEEYD   73 (84)
T ss_pred             ---CCcEEEEEEeCCCCc
Confidence               589999999999986

>TIGR03636 L23_arch archaeal ribosomal protein L23

Probab=99.54  E-value=8.5e-15  Score=100.04  Aligned_cols=53  Identities=19%  Similarity=0.145  Sum_probs=47.0

Q ss_pred             cccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCeeeecC
Q 044569           27 SEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGLLNAKP   93 (116)
Q Consensus        27 ~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~~Gk~~   93 (116)
                      |.+||++...               .++.|+|+|.|+++|             ||+|.+|||++++             +
T Consensus         1 P~iTEKs~~~---------------~e~~n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-------------~   52 (77)
T TIGR03636         1 PLVTEKAMNL---------------IEKENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-------------R   52 (77)
T ss_pred             CcccHHHHHH---------------HHhCCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-------------C
Confidence            4677877776               666799999999999             9999999999997             4


Q ss_pred             CeeEEEEEcCCCCE
Q 044569           94 DYKKAYVTSPPRTR  107 (116)
Q Consensus        94 ~yKKAyVTL~~G~~  107 (116)
                      +||||||||++|++
T Consensus        53 ~~KKA~VtL~~g~~   66 (77)
T TIGR03636        53 GEKKAYVKLAEEYA   66 (77)
T ss_pred             CceEEEEEECCCCc
Confidence            99999999999986

This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.

>PTZ00191 60S ribosomal protein L23a; Provisional

Probab=99.46  E-value=3.8e-14  Score=107.04  Aligned_cols=61  Identities=18%  Similarity=0.132  Sum_probs=53.2

Q ss_pred             eEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCee
Q 044569           23 WEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGLL   89 (116)
Q Consensus        23 ~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~~   89 (116)
                      ++..|.+||++...               .++.|+|+|.||++|             ||+|.+|||++.+|         
T Consensus        65 IIk~Pl~TEKa~~~---------------~E~~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~---------  120 (145)
T PTZ00191         65 IIKYPLTTEKAMKK---------------IEDNNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD---------  120 (145)
T ss_pred             hhhcccccHHHHHH---------------HhhCCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC---------
Confidence            55667777777666               677899999999999             99999999999987         


Q ss_pred             eecCCeeEEEEEcCCCCE-Eeee
Q 044569           90 NAKPDYKKAYVTSPPRTR-FRCG  111 (116)
Q Consensus        90 Gk~~~yKKAyVTL~~G~~-Idf~  111 (116)
                          +||||||+|.+|+. ||++
T Consensus       121 ----g~KKA~V~L~~~~~aidva  139 (145)
T PTZ00191        121 ----GLKKAYIRLSPDVDALDVA  139 (145)
T ss_pred             ----CceEEEEEECCCCcHHHHH
Confidence                89999999999987 9886

>KOG4089 consensus Predicted mitochondrial ribosomal protein L23 [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=3.5e-08  Score=76.15  Aligned_cols=77  Identities=27%  Similarity=0.185  Sum_probs=63.2

Q ss_pred             ceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCC----ccccc-C-CeeeecC-C
Q 044569           35 GKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGG----KKKKW-G-GLLNAKP-D   94 (116)
Q Consensus        35 ~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~G----K~KR~-g-~~~Gk~~-~   94 (116)
                      ..||||||||.|++|......++..|.|.+.+             |++|.+|.|....|    +.++. . ...-.+. +
T Consensus        17 ~rVf~Pn~~~~l~rp~~~q~p~~~~FrVp~~m~k~DvR~YL~~iY~l~v~~vrtrl~~Gk~~~~~k~r~~~~k~i~kdmd   96 (165)
T KOG4089|consen   17 LRVFFPNFWINLVRPLVTQPPKIVKFRVPMSMNKFDVRDYLTHIYDLPVVDVRTRLQHGKDYKKTKKRLQSPKRIKKDMD   96 (165)
T ss_pred             eeEecchhHHhhhcccccCCCceEEEEcchhhccccHHHHHHHhcCCceeeeeeeeeechhhhcceecccccceeecccc
Confidence            67899999999999976678899999999999             99999999999999    33321 1 1223445 9


Q ss_pred             eeEEEEEcCCCCEEeee
Q 044569           95 YKKAYVTSPPRTRFRCG  111 (116)
Q Consensus        95 yKKAyVTL~~G~~Idf~  111 (116)
                      ++=|||.+..|+++.|-
T Consensus        97 ~p~~Yv~~pr~~~~~~P  113 (165)
T KOG4089|consen   97 EPVAYVEEPRGSKFSFP  113 (165)
T ss_pred             cceeeecCCCCccccCC
Confidence            99999999999988663

>KOG1751 consensus 60s ribosomal protein L23 [Translation, ribosomal structure and biogenesis]

Probab=97.26  E-value=0.00028  Score=54.37  Aligned_cols=42  Identities=26%  Similarity=0.328  Sum_probs=36.6

Q ss_pred             CccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCeeeecCCe-eEEEEEcCCCC
Q 044569           51 TFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGLLNAKPDY-KKAYVTSPPRT  106 (116)
Q Consensus        51 t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~~Gk~~~y-KKAyVTL~~G~  106 (116)
                      ..++.|..+|.||..|             +++|.+|||++              ++|+ |||||.|.+..
T Consensus        90 k~ednNtlvf~vd~kankhqiKqAVkkLyd~dvakvntli--------------~p~g~kkayv~la~dy  145 (157)
T KOG1751|consen   90 KIEDNNTLVFIVDSKANKHQIKQAVKKLYDTDVAKVNTLI--------------RPDGEKKAYVRLAPDY  145 (157)
T ss_pred             chhhCceeEEEEecccchHHHHHHHHHHhccchhhheeee--------------cCCCceeEEEecCCch
Confidence            3577899999999998             99999999998              6667 99999999763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	116
3r8s_T	93	50S ribosomal protein L23; protein biosynthesis, R	7e-06
2zjr_Q	95	50S ribosomal protein L23; ribosome, large ribosom	2e-05
3tve_T	92	50S ribosomal protein L23; RNA, ribosome, tRNA, tr	2e-05

>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T 1vs6_T ... Length = 93

 Score = 40.6 bits (96), Expect = 7e-06
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 69  EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
           EV+   TL   GK K+ G  +  + D+KKAYVT
Sbjct: 54  EVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVT 86

>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U Length = 95

 Score = 39.1 bits (92), Expect = 2e-05
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 69  EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
            V    T+N  GK+K+ G  +  + D KKA V 
Sbjct: 49  RVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVR 81

>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ... Length = 92

 Score = 39.0 bits (92), Expect = 2e-05
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 69  EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
           +V +  TL+  GKKK+ G  L  +PD KKA V 
Sbjct: 48  KVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQ 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	116
3tve_T	92	50S ribosomal protein L23; RNA, ribosome, tRNA, tr	99.9
3r8s_T	93	50S ribosomal protein L23; protein biosynthesis, R	99.89
2zjr_Q	95	50S ribosomal protein L23; ribosome, large ribosom	99.87
1vq8_S	85	50S ribosomal protein L23P; ribosome 50S, protein-	99.66
2zkr_s	156	60S ribosomal protein L23A; protein-RNA complex, 6	99.57
3j21_T	86	50S ribosomal protein L23P; archaea, archaeal, KIN	99.56
3bbo_V	198	Ribosomal protein L23; large ribosomal subunit, sp	99.49
3u5e_X	142	60S ribosomal protein L25; translation, ribosome,	99.46
3iz5_X	152	60S ribosomal protein L23A (L23P); eukaryotic ribo	99.43
4a17_R	150	RPL23A, 60S ribosomal protein L21; eukaryotic ribo	99.4

>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...

Probab=99.90  E-value=2.5e-24  Score=150.05  Aligned_cols=73  Identities=26%  Similarity=0.370  Sum_probs=68.4

Q ss_pred             eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569           22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL   88 (116)
Q Consensus        22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~   88 (116)
                      .++++|.+||++...               .++ |+|+|.|+++|             ||+|.+|||++++||.||+|++
T Consensus         4 ~iI~~P~iTEKa~~~---------------~e~-n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~kR~g~~   67 (92)
T 3tve_T            4 DVILAPVLSEKAYAG---------------FAE-GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRY   67 (92)
T ss_dssp             HHEEEECCSHHHHTT---------------TTT-TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEEESSSC
T ss_pred             heecccccCHHHHHH---------------hhC-CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCceeeeccc
Confidence            357889999998887               666 99999999999             9999999999999999999999


Q ss_pred             eeecCCeeEEEEEcCCCCEEee
Q 044569           89 LNAKPDYKKAYVTSPPRTRFRC  110 (116)
Q Consensus        89 ~Gk~~~yKKAyVTL~~G~~Idf  110 (116)
                      .|++++||||||||++|++|||
T Consensus        68 ~G~~~~~KKA~VtL~~g~~Id~   89 (92)
T 3tve_T           68 LGKRPDRKKAIVQVAPGQKIEA   89 (92)
T ss_dssp             EEECCCEEEEEEEECTTCCCTT
T ss_pred             cccCCCceEEEEEcCCCCcccC
Confidence            9999999999999999999997

>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...

Probab=99.89  E-value=1.2e-23  Score=146.79  Aligned_cols=73  Identities=25%  Similarity=0.312  Sum_probs=68.5

Q ss_pred             eeeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCC
Q 044569           21 TEWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGG   87 (116)
Q Consensus        21 ~~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~   87 (116)
                      ..++++|.+||++..+               .++.|+|+|.||++|             ||+|.+|||++++||.||+|+
T Consensus         8 ~~iIk~P~iTEKa~~~---------------~e~~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~kR~g~   72 (93)
T 3r8s_T            8 LKVLRAPHVSEKASTA---------------MEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQ   72 (93)
T ss_dssp             HHHEEEECCSHHHHHH---------------HHTTSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCBCCSSS
T ss_pred             HhhhhccccCHHHHHH---------------HHhCCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCceeeeCC
Confidence            4578899999999888               677899999999999             999999999999999999999


Q ss_pred             eeeecCCeeEEEEEcCCCCEE
Q 044569           88 LLNAKPDYKKAYVTSPPRTRF  108 (116)
Q Consensus        88 ~~Gk~~~yKKAyVTL~~G~~I  108 (116)
                      +.|++++||||||||++|++|
T Consensus        73 ~~G~~~~~KKAiVtL~~g~~I   93 (93)
T 3r8s_T           73 RIGRRSDWKKAYVTLKEGQNL   93 (93)
T ss_dssp             SCCBCCCEEEEEEECCSCCCC
T ss_pred             ccccCCCcEEEEEEcCCcCCC
Confidence            999999999999999999986

>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U

Probab=99.87  E-value=2.3e-23  Score=145.94  Aligned_cols=74  Identities=22%  Similarity=0.211  Sum_probs=67.4

Q ss_pred             eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569           22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL   88 (116)
Q Consensus        22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~   88 (116)
                      .++++|.+||++...               .+ .|+|+|.|+++|             ||+|.+|||+|++||.||.|++
T Consensus         5 ~iI~~PviTEKs~~~---------------~e-~n~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK~kR~g~~   68 (95)
T 2zjr_Q            5 DILQAPVISEKAYSA---------------ME-RGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRF   68 (95)
T ss_dssp             SSCCEECCTHHHHHH---------------HT-TTCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSSC
T ss_pred             hceeccccCHHHHHH---------------HH-CCEEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCccceeccc
Confidence            466788888888876               44 477999999999             9999999999999999999999


Q ss_pred             eeecCCeeEEEEEcCCCCEEeee
Q 044569           89 LNAKPDYKKAYVTSPPRTRFRCG  111 (116)
Q Consensus        89 ~Gk~~~yKKAyVTL~~G~~Idf~  111 (116)
                      .|++++||||||||++|++|||.
T Consensus        69 ~G~~~~~KKAiVtL~~g~~id~~   91 (95)
T 2zjr_Q           69 IGQRNDRKKAIVRLAEGQSIEAL   91 (95)
T ss_dssp             CCCCCCBEEEEEECCSSCCCSST
T ss_pred             cccCCCcEEEEEEeCCCCeeecc
Confidence            99999999999999999999985

>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...

Probab=99.66  E-value=3.8e-17  Score=112.41  Aligned_cols=62  Identities=15%  Similarity=0.062  Sum_probs=56.1

Q ss_pred             eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569           22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL   88 (116)
Q Consensus        22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~   88 (116)
                      .+..+|.+||++...               .++.|+|+|.|+++|             ||+|.+|||++++         
T Consensus         4 ~iIk~P~iTEKa~~~---------------~e~~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~---------   59 (85)
T 1vq8_S            4 DVIKHPHVTEKAMND---------------MDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM---------   59 (85)
T ss_dssp             CSEEEECCSHHHHHH---------------HHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT---------
T ss_pred             ceeeccccCHHHHHH---------------HHhCCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC---------
Confidence            467889999999888               777899999999999             9999999999986         


Q ss_pred             eeecCCeeEEEEEcCCCCE-Eeee
Q 044569           89 LNAKPDYKKAYVTSPPRTR-FRCG  111 (116)
Q Consensus        89 ~Gk~~~yKKAyVTL~~G~~-Idf~  111 (116)
                          ++||||||||++|++ ||+.
T Consensus        60 ----~~~KKA~VtL~~g~~aid~~   79 (85)
T 1vq8_S           60 ----DGEKKAVVRLSEDDDAQEVA   79 (85)
T ss_dssp             ----TSSEEEEEEECTTSCHHHHH
T ss_pred             ----CCceEEEEEECCCCcHHHHH
Confidence                369999999999998 9875

>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.57  E-value=8.4e-16  Score=116.05  Aligned_cols=62  Identities=19%  Similarity=0.140  Sum_probs=51.2

Q ss_pred             eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569           22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL   88 (116)
Q Consensus        22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~   88 (116)
                      .++++|.+||++...               .++.|+|+|.||++|             ||+|.+|||+|++|        
T Consensus        75 ~iIk~PliTEKa~~~---------------~E~~n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~--------  131 (156)
T 2zkr_s           75 AIIKFPLTTESAMKK---------------IEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD--------  131 (156)
T ss_dssp             -CEEEECCSHHHHHH---------------HHHHCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS--------
T ss_pred             HhHhcccccHHHHHH---------------HHhCCcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCC--------
Confidence            455555555555555               566799999999999             99999999999987        


Q ss_pred             eeecCCeeEEEEEcCCCCE-Eeee
Q 044569           89 LNAKPDYKKAYVTSPPRTR-FRCG  111 (116)
Q Consensus        89 ~Gk~~~yKKAyVTL~~G~~-Idf~  111 (116)
                           +||||||+|++|++ |||.
T Consensus       132 -----~~KKAiVtL~~g~~aid~~  150 (156)
T 2zkr_s          132 -----GEKKAYVRLAPDYDALDVA  150 (156)
T ss_dssp             -----SCEEEEEEECTTSCHHHHH
T ss_pred             -----CceEEEEEECCCCcHHHHH
Confidence                 59999999999987 9875

>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.56  E-value=3.8e-15  Score=102.67  Aligned_cols=62  Identities=21%  Similarity=0.181  Sum_probs=54.1

Q ss_pred             eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569           22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL   88 (116)
Q Consensus        22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~   88 (116)
                      .+..+|.+||++...               .++.|+|+|.|+++|             ||+|.+|||++++         
T Consensus         5 ~iIk~P~iTEKa~~~---------------~e~~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~---------   60 (86)
T 3j21_T            5 KVIIRPVVTEKAISL---------------IEKENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP---------   60 (86)
T ss_dssp             CCEEECCCSHHHHHH---------------HHTSCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT---------
T ss_pred             HhhhccccCHHHHHH---------------HHhCCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC---------
Confidence            467889999998887               677899999999999             9999999999986         


Q ss_pred             eeecCCeeEEEEEcCCCCE-Eeee
Q 044569           89 LNAKPDYKKAYVTSPPRTR-FRCG  111 (116)
Q Consensus        89 ~Gk~~~yKKAyVTL~~G~~-Idf~  111 (116)
                          ++||||||+|++|++ +|++
T Consensus        61 ----~~~KKA~V~L~~~~~a~dva   80 (86)
T 3j21_T           61 ----RGEKKAYVKLKPEYSASEVA   80 (86)
T ss_dssp             ----TSCEEEEEEECTTSCHHHHH
T ss_pred             ----CCceEEEEEcCCCCcHHHHH
Confidence                469999999999976 5543

>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=99.49  E-value=2e-15  Score=117.45  Aligned_cols=62  Identities=19%  Similarity=0.126  Sum_probs=52.2

Q ss_pred             eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569           22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL   88 (116)
Q Consensus        22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~   88 (116)
                      .++++|.+||++...               .++.|+|+|.||++|             ||+|.+|||++++|        
T Consensus       113 dIIk~PvITEKAmkl---------------iE~nNkyvF~Vd~kANK~QIKqAVEkLFdVKV~kVNTln~~g--------  169 (198)
T 3bbo_V          113 QILQSPIITEAAIKN---------------IADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPD--------  169 (198)
T ss_dssp             CCBCCCCCCHHHHHH---------------HHTSCEECCEECTTCCHHHHHHTTTTTSCCCEEECCCEEETT--------
T ss_pred             heeeccccCHHHHHH---------------HHhCCEEEEEECCCCCHHHHHHHHHHHhCCceeEEEeeEcCC--------
Confidence            455566666666555               567799999999999             99999999999998        


Q ss_pred             eeecCCeeEEEEEcCCCCE-Eeee
Q 044569           89 LNAKPDYKKAYVTSPPRTR-FRCG  111 (116)
Q Consensus        89 ~Gk~~~yKKAyVTL~~G~~-Idf~  111 (116)
                           +||||||+|++|++ ||+.
T Consensus       170 -----g~KKAyVtLaeG~~AID~a  188 (198)
T 3bbo_V          170 -----GTKKAYIMLNKEYNASELA  188 (198)
T ss_dssp             -----TEEECCEEECTTTCTTTHH
T ss_pred             -----CeEEEEEEeCCCCchHHHH
Confidence                 59999999999988 9875

>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T

Probab=99.46  E-value=1.5e-14  Score=107.85  Aligned_cols=63  Identities=16%  Similarity=0.076  Sum_probs=53.2

Q ss_pred             eeeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCC
Q 044569           21 TEWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGG   87 (116)
Q Consensus        21 ~~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~   87 (116)
                      -.+++.|.+||++...               .++.|+|+|.||++|             ||+|.+|||++++|       
T Consensus        60 ~~IIk~PliTEKa~~~---------------~E~~N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-------  117 (142)
T 3u5e_X           60 YKVIEQPITSETAMKK---------------VEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-------  117 (142)
T ss_dssp             HHHEEEECCCHHHHHH---------------HHHHCEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-------
T ss_pred             HHhhhcCCcCHHHHHH---------------HHhCCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-------
Confidence            3566777777777666               566799999999999             99999999999975       


Q ss_pred             eeeecCCeeEEEEEcCCCC-EEeee
Q 044569           88 LLNAKPDYKKAYVTSPPRT-RFRCG  111 (116)
Q Consensus        88 ~~Gk~~~yKKAyVTL~~G~-~Idf~  111 (116)
                            +||||||+|++|+ .||++
T Consensus       118 ------g~KKAyV~L~~~~daldvA  136 (142)
T 3u5e_X          118 ------GTKKAYVRLTADYDALDIA  136 (142)
T ss_dssp             ------SCEEEEEEECTTCCHHHHH
T ss_pred             ------CceEEEEEeCCCCcHHHHH
Confidence                  7999999999996 48765

>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R

Probab=99.40  E-value=1.7e-13  Score=102.96  Aligned_cols=63  Identities=17%  Similarity=0.126  Sum_probs=53.3

Q ss_pred             eeeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCC
Q 044569           21 TEWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGG   87 (116)
Q Consensus        21 ~~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~   87 (116)
                      -.+++.|.+||++...               .++.|+|+|.||++|             ||+|.+|||++++|       
T Consensus        68 y~IIk~PliTEKa~~~---------------~E~~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-------  125 (150)
T 4a17_R           68 HSVVKTPLTTEKAMKK---------------MEDENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-------  125 (150)
T ss_dssp             HHHEEEECCSHHHHHH---------------HHHSSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-------
T ss_pred             HHhhhccccCHHHHHH---------------HHhCCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-------
Confidence            3567777777777666               677899999999999             99999999999975       


Q ss_pred             eeeecCCeeEEEEEcCCCC-EEeee
Q 044569           88 LLNAKPDYKKAYVTSPPRT-RFRCG  111 (116)
Q Consensus        88 ~~Gk~~~yKKAyVTL~~G~-~Idf~  111 (116)
                            +||||||+|++|+ .||++
T Consensus       126 ------g~KKAyV~La~~~dAldvA  144 (150)
T 4a17_R          126 ------GNKKAYIRLAADSDSLTLA  144 (150)
T ss_dssp             ------SCEEEEEEECSSSCHHHHH
T ss_pred             ------CcEEEEEEcCCCCcHHHHH
Confidence                  6999999999995 47765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	116
d2j01x1	93	d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus t	5e-06
d2zjrq1	93	d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococc	6e-06
d2qamt1	93	d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherich	1e-05

>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus thermophilus [TaxId: 274]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Thermus thermophilus [TaxId: 274]

 Score = 39.7 bits (93), Expect = 5e-06
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 67  GFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
             +V +  TL+  GKKK+ G  L  +PD KKA V 
Sbjct: 46  KVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQ 80

>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus radiodurans [TaxId: 1299]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 39.7 bits (93), Expect = 6e-06
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 67  GFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
           G  V    T+N  GK+K+ G  +  + D KKA V 
Sbjct: 46  GVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVR 80

>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli [TaxId: 562]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (90), Expect = 1e-05
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 67  GFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
             EV+   TL   GK K+ G  +  + D+KKAYVT
Sbjct: 52  EVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVT 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	116
d2zjrq1	93	Ribosomal protein L23 {Deinococcus radiodurans [Ta	99.89
d2qamt1	93	Ribosomal protein L23 {Escherichia coli [TaxId: 56	99.87
d2j01x1	93	Ribosomal protein L23 {Thermus thermophilus [TaxId	99.87
d1vqos1	81	Ribosomal protein L23 {Archaeon Haloarcula marismo	99.55

>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.89  E-value=2e-24  Score=149.02  Aligned_cols=74  Identities=22%  Similarity=0.207  Sum_probs=67.9

Q ss_pred             eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569           22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL   88 (116)
Q Consensus        22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~   88 (116)
                      +++++|.+||++...               . +.|+|+|+|+++|             ||+|.+|||+|++||.||+|+.
T Consensus         4 dvi~~P~iTEKs~~~---------------~-e~n~y~F~V~~~atK~~Ik~ave~lf~VkV~~Vnt~~~~gK~kr~~~~   67 (93)
T d2zjrq1           4 DILQAPVISEKAYSA---------------M-ERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRF   67 (93)
T ss_dssp             SSCCEECCTHHHHHH---------------H-TTTCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSSC
T ss_pred             cEEeecccCHHHHHH---------------H-HCCEEEEEEeCCCCHHHHHHHHHHHcCCCeEEEEEEEeCCCceEECCc
Confidence            356788899998876               4 4699999999999             9999999999999999999999


Q ss_pred             eeecCCeeEEEEEcCCCCEEeee
Q 044569           89 LNAKPDYKKAYVTSPPRTRFRCG  111 (116)
Q Consensus        89 ~Gk~~~yKKAyVTL~~G~~Idf~  111 (116)
                      .|++++||||||||++|++|||-
T Consensus        68 ~g~~~~~KKAiVtL~~g~~I~~~   90 (93)
T d2zjrq1          68 IGQRNDRKKAIVRLAEGQSIEAL   90 (93)
T ss_dssp             CCCCCCBEEEEEECCSSCCCSST
T ss_pred             ceecCCCEEEEEEcCCcCccccc
Confidence            99999999999999999999973

>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=3.2e-24  Score=147.83  Aligned_cols=72  Identities=25%  Similarity=0.322  Sum_probs=68.0

Q ss_pred             eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569           22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL   88 (116)
Q Consensus        22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~   88 (116)
                      .++++|.+||++...               .+..|+|+|+|+++|             ||+|.+|||+|++||.||+|+.
T Consensus         9 ~ii~~PviTEKs~~~---------------~e~~n~ytF~V~~~AtK~eIK~ave~~f~VkV~~Vnt~~~~gK~kr~~~~   73 (93)
T d2qamt1           9 KVLRAPHVSEKASTA---------------MEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQR   73 (93)
T ss_dssp             CCEEEECCCHHHHTH---------------HHHSSCCCEEECSSCCSHHHHHHHHHTTCCCCCCCCCEEECCCEECSTTC
T ss_pred             HHHhccccCHHHHHh---------------HhhCCEEEEEECCCCCHHHHHHHHHHHhCCcceEEEEEEeCCceeEeCCc
Confidence            578899999998877               777899999999999             9999999999999999999999


Q ss_pred             eeecCCeeEEEEEcCCCCEE
Q 044569           89 LNAKPDYKKAYVTSPPRTRF  108 (116)
Q Consensus        89 ~Gk~~~yKKAyVTL~~G~~I  108 (116)
                      .|++++||||||||++|++|
T Consensus        74 ~g~~~~~KKAiVtL~~g~~I   93 (93)
T d2qamt1          74 IGRRSDWKKAYVTLKEGQNL   93 (93)
T ss_dssp             CEECCCEEECCCCCSSCCCC
T ss_pred             ccccCCCEEEEEEcCCCCcC
Confidence            99999999999999999987

>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=8.3e-25  Score=150.71  Aligned_cols=73  Identities=26%  Similarity=0.354  Sum_probs=67.9

Q ss_pred             eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569           22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL   88 (116)
Q Consensus        22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~   88 (116)
                      +++++|.+||++...               .+ .|+|+|+|+++|             ||+|.+|||+|++||.||+|+.
T Consensus         4 dvi~~PiiTEKs~~l---------------~e-~n~y~F~V~~~atK~eIK~ave~~f~VkV~~Vnt~~~~gK~kr~~~~   67 (93)
T d2j01x1           4 DVILAPVLSEKAYAG---------------FA-EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRY   67 (93)
T ss_dssp             TTCCEECCSHHHHHH---------------HT-SSCCCEECCSSSCCTTCHHHHTTTTTCCCCCBCCCCCCCCCCSSCCC
T ss_pred             heeeccccCHhHhhh---------------Hh-CCeEEEEEeCCCCHHHHHHHHHHHhCCCeeEEEEEEeCCceeEeCCc
Confidence            567889999998776               44 699999999999             9999999999999999999999


Q ss_pred             eeecCCeeEEEEEcCCCCEEee
Q 044569           89 LNAKPDYKKAYVTSPPRTRFRC  110 (116)
Q Consensus        89 ~Gk~~~yKKAyVTL~~G~~Idf  110 (116)
                      .|++++||||||+|++|++|||
T Consensus        68 ~g~~~~~KKA~V~L~~g~~I~~   89 (93)
T d2j01x1          68 LGKRPDRKKAIVQVAPGQKIEA   89 (93)
T ss_dssp             CSCCCCBCCBCCSTTTCCSSSS
T ss_pred             ccccCCCEEEEEEcCCcCEecc
Confidence            9999999999999999999996

>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.55  E-value=9.8e-16  Score=103.00  Aligned_cols=62  Identities=15%  Similarity=0.060  Sum_probs=54.6

Q ss_pred             eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569           22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL   88 (116)
Q Consensus        22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~   88 (116)
                      +++++|.+||++...               .+..|+|+|.|+++|             ||+|.+|||++.+|+       
T Consensus         3 ~iI~~P~iTEKs~~~---------------~e~~n~y~F~V~~~A~K~~IK~AVe~lf~VkV~~Vnt~~~~~~-------   60 (81)
T d1vqos1           3 DVIKHPHVTEKAMND---------------MDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDG-------   60 (81)
T ss_dssp             CSEEEECCSHHHHHH---------------HHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTS-------
T ss_pred             ceeeccccCHHHHHH---------------HHhCCEEEEEEcCcCCHHHHHHHHHHHcCCceeEEEEeEcCCC-------
Confidence            568899999998877               677899999999999             999999999998765       


Q ss_pred             eeecCCeeEEEEEcCCCCE-Eeee
Q 044569           89 LNAKPDYKKAYVTSPPRTR-FRCG  111 (116)
Q Consensus        89 ~Gk~~~yKKAyVTL~~G~~-Idf~  111 (116)
                            +|||||+|++|++ +|++
T Consensus        61 ------~KkA~V~L~~~~~a~dia   78 (81)
T d1vqos1          61 ------EKKAVVRLSEDDDAQEVA   78 (81)
T ss_dssp             ------SEEEEEEECTTSCHHHHH
T ss_pred             ------cEEEEEEeCCCCcHHHHH
Confidence                  4999999999986 6664