Citrus Sinensis ID: 044928


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
MIEEYDRLAQNQNTRSARLRLFLFTKGEDSVSRASSISSLLDASTNREHWFFDAINNGAAPGSGLERGRSEASSIFSEAPDYLFGLENSDETQPRELKPKSRLMLHDNVSVSDPGSPAPVVSSPFCSTSSGPTVPSMPDLPPVKTKPDNPAPVLESKHSGQIDGFSELQAVQQTGYSGQPMWHYVSETRYSSPAVQQKTPVYYVPGPVQTGNAPVQQAGPIRAQYVPQYQVPPGGQIPVGYHQPVPGPGQVYGGAVRSVVTMDHSYDQPVRVVSADGVNQQVYYGVRNAGLVPGYPGMMIPGGEELRKSGSDATPGRISQS
cHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEccccccccccccccccccccccccccccccccccccc
cHHHHHHHHcccccccccEEEEEcccccccccccHHHHHcccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccEcccccccccccEcccccccccccccccccccEEEEccccccEEEEEEcccccccccccEEcccccccccccccccccccccc
MIEEYDRLAQNQNTRSARLRLFLftkgedsvsrASSISSLLDASTNREHWFFDainngaapgsglergrseassifseapdylfglensdetqprelkpksrlmlhdnvsvsdpgspapvvsspfcstssgptvpsmpdlppvktkpdnpapvleskhsgqidgfSELQAVQqtgysgqpmwhyvsetrysspavqqktpvyyvpgpvqtgnapvqqagpiraqyvpqyqvppggqipvgyhqpvpgpgqvyggAVRSVVTMdhsydqpvrvvsadgvnqqVYYGVrnaglvpgypgmmipggeelrksgsdatpgrisqs
mieeydrlaqnqntrsaRLRLFLftkgedsvsraSSISSLLDASTNREHWFFDAINNGAAPGSGLERGRSEASSIFSEAPDYLFGLENSDETQPRELKPKSRLMLHDNVSVSDPGSPAPVVSSPFCSTSSGPTVPSMPDLPPVKTKPDNPAPVLESKHSGQIDGFSELQAVQQTGYSGQPMWHYVSETRYSSPAVQQKTPVYYVPGPVQTGNAPVQQAGPIRAQYVPQYQVPPGGQIPVGYHQPVPGPGQVYGGAVRSVVTMDHSYDQPVRVVSADGVNQQVYYGVRNAGLVPGYPGMMIPGGEelrksgsdatpgrisqs
MIEEYDRLAQNQNTRSARLRLFLFTKGEdsvsrassisslldasTNREHWFFDAINNGAAPGSGLERGRSEASSIFSEAPDYLFGLENSDETQPRELKPKSRLMLHDNVSVSDPGSPAPVVSSPFCSTSSGPTVPSMPDLPPVKTKPDNPAPVLESKHSGQIDGFSELQAVQQTGYSGQPMWHYVSETRYSSPAVQQKTPVYYVPGPVQTGNAPVQQAGPIRAQYVPQYQVPPGGQIPVGYHqpvpgpgqvyggAVRSVVTMDHSYDQPVRVVSADGVNQQVYYGVRNAGLVPGYPGMMIPGGEELRKSGSDATPGRISQS
******************LRLFLFT*********************REHWFFDAIN*********************************************************************************************************************TGYSGQPMWHYVSETRYSSPAVQQKTPVYYVPGPVQTGNAPVQQAGPIRAQYVPQYQVPPGGQIPVGYHQPVPGPGQVYGGAVRSVVTMDHSYDQPVRVVSADGVNQQVYYGVRNAGLVPGYPGMM**********************
MIEEYDR*************LFLFT***********************HWFFDAINNG**********************************************************************************************************************************************************************************************************************VSADGVNQQVYYG************************************
MIEEYDRLAQNQNTRSARLRLFLFTK***********SSLLDASTNREHWFFDAINNGAAP************SIFSEAPDYLFGLENSDETQPRELKPKSRLMLHDNVSVSDPGSPAPVVSSPFCSTSSGPTVPSMPDLPPVKTKPDNPAPVLESKHSGQIDGFSELQAVQQTGYSGQPMWHYVSETRYSSPAVQQKTPVYYVPGPVQTGNAPVQQAGPIRAQYVPQYQVPPGGQIPVGYHQPVPGPGQVYGGAVRSVVTMDHSYDQPVRVVSADGVNQQVYYGVRNAGLVPGYPGMMIPGGEEL***************
MIEEYDRLAQNQNTRSARLRLFLFTKG*******************REHWFFDAINNGAAP************SIFSEAPDYLFGLEN*********************************************VPSMPDLPPVKTKPDNPAPVLESKHSGQIDGFSELQAVQQTGYSGQPMWHYVSETRYSSPAVQQKTPVYYVPGPVQTGNAPVQQAGPIRAQYVPQYQVPPGGQIPVGYHQPVPGPGQVYGGAVRSVVTMDHSYDQPVRVVSADGVNQQVYYGVRNAGLVPGYPGMMIPG*******************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIEEYDRLAQNQNTRSARLRLFLFTKGEDSVSRASSISSLLDASTNREHWFFDAINNGAAPGSGLERGRSEASSIFSEAPDYLFGLENSDETQPRELKPKSRLMLHDNVSVSDPGSPAPVVSSPFCSTSSGPTVPSMPDLPPVKTKPDNPAPVLESKHSGQIDGFSELQAVQQTGYSGQPMWHYVSETRYSSPAVQQKTPVYYVPGPVQTGNAPVQQAGPIRAQYVPQYQVPPGGQIPVGYHQPVPGPGQVYGGAVRSVVTMDHSYDQPVRVVSADGVNQQVYYGVRNAGLVPGYPGMMIPGGEELRKSGSDATPGRISQS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query321
359495708 428 PREDICTED: uncharacterized protein LOC10 0.959 0.719 0.620 6e-95
147778293 540 hypothetical protein VITISV_034615 [Viti 0.959 0.570 0.618 2e-94
255567451417 ATP binding protein, putative [Ricinus c 0.928 0.714 0.612 2e-88
224078832420 predicted protein [Populus trichocarpa] 0.937 0.716 0.603 6e-86
224114107415 predicted protein [Populus trichocarpa] 0.909 0.703 0.560 5e-73
356524756421 PREDICTED: uncharacterized protein LOC10 0.931 0.710 0.523 2e-69
356521285 424 PREDICTED: uncharacterized protein LOC10 0.928 0.702 0.487 4e-65
449433908 429 PREDICTED: uncharacterized protein LOC10 0.937 0.701 0.522 8e-63
357475973 431 hypothetical protein MTR_4g091530 [Medic 0.925 0.689 0.486 1e-58
260401070 434 hypothetical protein [Medicago sativa] 0.934 0.691 0.480 6e-56
>gi|359495708|ref|XP_002270693.2| PREDICTED: uncharacterized protein LOC100261837 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  353 bits (906), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 204/329 (62%), Positives = 245/329 (74%), Gaps = 21/329 (6%)

Query: 1   MIEEYDRLAQNQ-NTRSARLRLFLFTKGEDSVSRASSISSLLDASTNREHWFFDAINNGA 59
           M+EEYDRLA +    ++ARLRLFLF    D  SRASSISSLLD S+ RE+WFFDAIN G 
Sbjct: 113 MMEEYDRLALSGIGLKTARLRLFLFPS--DDGSRASSISSLLDGSSKRENWFFDAINGG- 169

Query: 60  APGSGLERGRSEASSIFSEAPDYLFGLENSDETQ--PRELKPKSRLMLHDNVSVSDPGSP 117
               GLERGRSEASSI SE PDYLFGL+NSD+ Q  PRE K K+R  L +NVSVSDPGSP
Sbjct: 170 ----GLERGRSEASSIVSEVPDYLFGLDNSDDIQALPRESKLKTRTALAENVSVSDPGSP 225

Query: 118 APVVSSPFCSTSSGPTVPSMPDLPPVKTKPDNPAPVLESKHSGQIDGFSEL--QAVQQT- 174
           AP ++SPFCSTSSGP+VP++PDLPPVKTKPD   P +E K +   +GF+++   A+ Q+ 
Sbjct: 226 APAITSPFCSTSSGPSVPAIPDLPPVKTKPDKSIPPVEVKDNPP-EGFADVIEPAIPQSG 284

Query: 175 GYSGQPMWHYVS-ETRYSSPAVQQKTPVYYVPGPVQTGNAPVQQAGPIRAQYVPQYQVPP 233
           GY+G PMWHY + ++ Y    V Q  PVYYVPGPV  GN PVQ   P+RAQYVPQY  PP
Sbjct: 285 GYAGNPMWHYNNPDSHYPGQPVHQ-IPVYYVPGPVPPGNMPVQSV-PVRAQYVPQYPGPP 342

Query: 234 GGQIPVGYHQPVPGPGQVYGGAVRSVVTMDHSYDQPVRVVSADGVNQQVYYGVRNAGLVP 293
            GQIPVG+  P PG GQVYGGA+R+V  M+  YD P+RVVS DG+NQQVYYGVR AG+V 
Sbjct: 343 -GQIPVGFRHPGPGMGQVYGGAIRAVGPME-GYDMPMRVVS-DGMNQQVYYGVRTAGMVQ 399

Query: 294 GY-PGMMIPGGEELRKSGSDATPGRISQS 321
            Y PGM++P GEE + +GSD  PGR+S +
Sbjct: 400 AYPPGMVVPAGEEFQGNGSDKKPGRVSTT 428




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778293|emb|CAN65141.1| hypothetical protein VITISV_034615 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255567451|ref|XP_002524705.1| ATP binding protein, putative [Ricinus communis] gi|223536066|gb|EEF37724.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224078832|ref|XP_002305645.1| predicted protein [Populus trichocarpa] gi|222848609|gb|EEE86156.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224114107|ref|XP_002316669.1| predicted protein [Populus trichocarpa] gi|222859734|gb|EEE97281.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356524756|ref|XP_003530994.1| PREDICTED: uncharacterized protein LOC100803004 [Glycine max] Back     alignment and taxonomy information
>gi|356521285|ref|XP_003529287.1| PREDICTED: uncharacterized protein LOC100806717 [Glycine max] Back     alignment and taxonomy information
>gi|449433908|ref|XP_004134738.1| PREDICTED: uncharacterized protein LOC101213084 isoform 1 [Cucumis sativus] gi|449433910|ref|XP_004134739.1| PREDICTED: uncharacterized protein LOC101213084 isoform 2 [Cucumis sativus] gi|449433912|ref|XP_004134740.1| PREDICTED: uncharacterized protein LOC101213084 isoform 3 [Cucumis sativus] gi|449479395|ref|XP_004155588.1| PREDICTED: uncharacterized LOC101213084 isoform 1 [Cucumis sativus] gi|449479399|ref|XP_004155589.1| PREDICTED: uncharacterized LOC101213084 isoform 2 [Cucumis sativus] gi|449479403|ref|XP_004155590.1| PREDICTED: uncharacterized LOC101213084 isoform 3 [Cucumis sativus] gi|449479407|ref|XP_004155591.1| PREDICTED: uncharacterized LOC101213084 isoform 4 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357475973|ref|XP_003608272.1| hypothetical protein MTR_4g091530 [Medicago truncatula] gi|87240487|gb|ABD32345.1| Octicosapeptide/Phox/Bem1p [Medicago truncatula] gi|355509327|gb|AES90469.1| hypothetical protein MTR_4g091530 [Medicago truncatula] Back     alignment and taxonomy information
>gi|260401070|gb|ACX37086.1| hypothetical protein [Medicago sativa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query321
TAIR|locus:2115658477 AT4G05150 [Arabidopsis thalian 0.934 0.628 0.387 7.1e-45
TAIR|locus:2038836 720 PDE331 "PIGMENT DEFECTIVE 331" 0.454 0.202 0.295 3e-05
TAIR|locus:2115658 AT4G05150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 139/359 (38%), Positives = 184/359 (51%)

Query:     1 MIEEYDRLAQNQNTRSARLRLFLFTKG----EXXXXXXXXXXXXXXXXTNREHWFFDAIN 56
             M++EYDR+AQNQN R++RLRLFLFTK     E                 NRE WF DA+N
Sbjct:   138 MMDEYDRVAQNQNPRASRLRLFLFTKNVAGEEDNDSRASSISSLLDSSVNREQWFLDALN 197

Query:    57 NGAAP--------GSG--LERGRSEASSIFSEAPDYLFGLENSDETQP-RELKPKS-RLM 104
              G++         GSG   ER RSE SSI SE PDYLFGL+N DET P  EL+ +  R  
Sbjct:   198 LGSSAAATAVSNGGSGRVFERVRSEVSSIVSEVPDYLFGLDNFDETAPPHELRDRDPRAK 257

Query:   105 LHDNVS-VSDPGSPAPVVSSPFCSTSSGPTVP-SMPDLPP-VKTKPDNPAPVLESKHSGQ 161
             +   VS +SDPGSP   V SP+ STSS P +  S P+LPP V  KP++P PV   K + Q
Sbjct:   258 IQREVSTLSDPGSPRRDVPSPYGSTSSAPVMRISTPELPPPVFIKPESPEPVSTPKSNPQ 317

Query:   162 IDGFSELQAVQQTGYSGQPMWHYV----SETRYSSPAVQQKTPVYYVPG--P----VQTG 211
              +     Q +QQ+       W Y      +  Y    + Q +PVYYVPG  P    VQ G
Sbjct:   318 PE-----QVMQQSNLPVNSQWQYAPGPGQQVHYQGHTIHQ-SPVYYVPGSVPGNHMVQQG 371

Query:   212 NAPVQQAG----PIR--AQYVPQYQVPPGGQIPVGYHXXXXXXXXXXXXAVRSVVTMDHS 265
             N  VQ       P++   QY+ QY       +P+GYH                 V     
Sbjct:   372 NHMVQPGNHMVQPVQMPGQYLQQYH-----HVPMGYHQPQTHQMAGPGQVYGGTV----- 421

Query:   266 YDQPVRVVSADGVNQQVYYGVRNAGLVPGYP---GMMIPGGEELR--KSGSDATPGRIS 319
               +PV +++ DG+N+  YYG++  G V  Y    GM++PG EE +  ++ +D+  GR S
Sbjct:   422 --RPV-MMAVDGMNRTGYYGMKTPGPVQMYQHHTGMVVPGVEEQQQYRTETDSDTGRAS 477




GO:0005634 "nucleus" evidence=ISM
GO:0004674 "protein serine/threonine kinase activity" evidence=IDA
GO:0046777 "protein autophosphorylation" evidence=IDA
GO:0048767 "root hair elongation" evidence=RCA
TAIR|locus:2038836 PDE331 "PIGMENT DEFECTIVE 331" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00013172001
SubName- Full=Chromosome undetermined scaffold_448, whole genome shotgun sequence; (427 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
cd0641097 cd06410, PB1_UP2, Uncharacterized protein 2 0.002
>gnl|CDD|99731 cd06410, PB1_UP2, Uncharacterized protein 2 Back     alignment and domain information
 Score = 36.4 bits (85), Expect = 0.002
 Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 4/24 (16%)

Query: 1  MIEEYDRLAQNQNTRSARLRLFLF 24
          M+EEYDRL    +  SARLR+FLF
Sbjct: 78 MMEEYDRL----SGGSARLRVFLF 97


The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. Length = 97

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 46.8 bits (110), Expect = 6e-06
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 30/121 (24%)

Query: 3   EEYDRLAQNQNTRSARLRLF--LFTKGEDSVSRASSISSLLDASTNREHWFFDAINNGAA 60
           EE D +  +++  S  LRLF  L +K E+ V +   +  +L    N + +    I     
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF--VEEVLR--INYK-FLMSPIKT--- 100

Query: 61  PGSGLERGRSEASSIFSEAPDYLFGLENSDETQ---PR------------ELKPKSRLML 105
                +R  S  + ++ E  D L+  +N    +    R            EL+P   +++
Sbjct: 101 ----EQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 106 H 106
            
Sbjct: 156 D 156


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00