Citrus Sinensis ID: 044928
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 321 | ||||||
| 359495708 | 428 | PREDICTED: uncharacterized protein LOC10 | 0.959 | 0.719 | 0.620 | 6e-95 | |
| 147778293 | 540 | hypothetical protein VITISV_034615 [Viti | 0.959 | 0.570 | 0.618 | 2e-94 | |
| 255567451 | 417 | ATP binding protein, putative [Ricinus c | 0.928 | 0.714 | 0.612 | 2e-88 | |
| 224078832 | 420 | predicted protein [Populus trichocarpa] | 0.937 | 0.716 | 0.603 | 6e-86 | |
| 224114107 | 415 | predicted protein [Populus trichocarpa] | 0.909 | 0.703 | 0.560 | 5e-73 | |
| 356524756 | 421 | PREDICTED: uncharacterized protein LOC10 | 0.931 | 0.710 | 0.523 | 2e-69 | |
| 356521285 | 424 | PREDICTED: uncharacterized protein LOC10 | 0.928 | 0.702 | 0.487 | 4e-65 | |
| 449433908 | 429 | PREDICTED: uncharacterized protein LOC10 | 0.937 | 0.701 | 0.522 | 8e-63 | |
| 357475973 | 431 | hypothetical protein MTR_4g091530 [Medic | 0.925 | 0.689 | 0.486 | 1e-58 | |
| 260401070 | 434 | hypothetical protein [Medicago sativa] | 0.934 | 0.691 | 0.480 | 6e-56 |
| >gi|359495708|ref|XP_002270693.2| PREDICTED: uncharacterized protein LOC100261837 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 353 bits (906), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 204/329 (62%), Positives = 245/329 (74%), Gaps = 21/329 (6%)
Query: 1 MIEEYDRLAQNQ-NTRSARLRLFLFTKGEDSVSRASSISSLLDASTNREHWFFDAINNGA 59
M+EEYDRLA + ++ARLRLFLF D SRASSISSLLD S+ RE+WFFDAIN G
Sbjct: 113 MMEEYDRLALSGIGLKTARLRLFLFPS--DDGSRASSISSLLDGSSKRENWFFDAINGG- 169
Query: 60 APGSGLERGRSEASSIFSEAPDYLFGLENSDETQ--PRELKPKSRLMLHDNVSVSDPGSP 117
GLERGRSEASSI SE PDYLFGL+NSD+ Q PRE K K+R L +NVSVSDPGSP
Sbjct: 170 ----GLERGRSEASSIVSEVPDYLFGLDNSDDIQALPRESKLKTRTALAENVSVSDPGSP 225
Query: 118 APVVSSPFCSTSSGPTVPSMPDLPPVKTKPDNPAPVLESKHSGQIDGFSEL--QAVQQT- 174
AP ++SPFCSTSSGP+VP++PDLPPVKTKPD P +E K + +GF+++ A+ Q+
Sbjct: 226 APAITSPFCSTSSGPSVPAIPDLPPVKTKPDKSIPPVEVKDNPP-EGFADVIEPAIPQSG 284
Query: 175 GYSGQPMWHYVS-ETRYSSPAVQQKTPVYYVPGPVQTGNAPVQQAGPIRAQYVPQYQVPP 233
GY+G PMWHY + ++ Y V Q PVYYVPGPV GN PVQ P+RAQYVPQY PP
Sbjct: 285 GYAGNPMWHYNNPDSHYPGQPVHQ-IPVYYVPGPVPPGNMPVQSV-PVRAQYVPQYPGPP 342
Query: 234 GGQIPVGYHQPVPGPGQVYGGAVRSVVTMDHSYDQPVRVVSADGVNQQVYYGVRNAGLVP 293
GQIPVG+ P PG GQVYGGA+R+V M+ YD P+RVVS DG+NQQVYYGVR AG+V
Sbjct: 343 -GQIPVGFRHPGPGMGQVYGGAIRAVGPME-GYDMPMRVVS-DGMNQQVYYGVRTAGMVQ 399
Query: 294 GY-PGMMIPGGEELRKSGSDATPGRISQS 321
Y PGM++P GEE + +GSD PGR+S +
Sbjct: 400 AYPPGMVVPAGEEFQGNGSDKKPGRVSTT 428
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147778293|emb|CAN65141.1| hypothetical protein VITISV_034615 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255567451|ref|XP_002524705.1| ATP binding protein, putative [Ricinus communis] gi|223536066|gb|EEF37724.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224078832|ref|XP_002305645.1| predicted protein [Populus trichocarpa] gi|222848609|gb|EEE86156.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224114107|ref|XP_002316669.1| predicted protein [Populus trichocarpa] gi|222859734|gb|EEE97281.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356524756|ref|XP_003530994.1| PREDICTED: uncharacterized protein LOC100803004 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356521285|ref|XP_003529287.1| PREDICTED: uncharacterized protein LOC100806717 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449433908|ref|XP_004134738.1| PREDICTED: uncharacterized protein LOC101213084 isoform 1 [Cucumis sativus] gi|449433910|ref|XP_004134739.1| PREDICTED: uncharacterized protein LOC101213084 isoform 2 [Cucumis sativus] gi|449433912|ref|XP_004134740.1| PREDICTED: uncharacterized protein LOC101213084 isoform 3 [Cucumis sativus] gi|449479395|ref|XP_004155588.1| PREDICTED: uncharacterized LOC101213084 isoform 1 [Cucumis sativus] gi|449479399|ref|XP_004155589.1| PREDICTED: uncharacterized LOC101213084 isoform 2 [Cucumis sativus] gi|449479403|ref|XP_004155590.1| PREDICTED: uncharacterized LOC101213084 isoform 3 [Cucumis sativus] gi|449479407|ref|XP_004155591.1| PREDICTED: uncharacterized LOC101213084 isoform 4 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357475973|ref|XP_003608272.1| hypothetical protein MTR_4g091530 [Medicago truncatula] gi|87240487|gb|ABD32345.1| Octicosapeptide/Phox/Bem1p [Medicago truncatula] gi|355509327|gb|AES90469.1| hypothetical protein MTR_4g091530 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|260401070|gb|ACX37086.1| hypothetical protein [Medicago sativa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 321 | ||||||
| TAIR|locus:2115658 | 477 | AT4G05150 [Arabidopsis thalian | 0.934 | 0.628 | 0.387 | 7.1e-45 | |
| TAIR|locus:2038836 | 720 | PDE331 "PIGMENT DEFECTIVE 331" | 0.454 | 0.202 | 0.295 | 3e-05 |
| TAIR|locus:2115658 AT4G05150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 139/359 (38%), Positives = 184/359 (51%)
Query: 1 MIEEYDRLAQNQNTRSARLRLFLFTKG----EXXXXXXXXXXXXXXXXTNREHWFFDAIN 56
M++EYDR+AQNQN R++RLRLFLFTK E NRE WF DA+N
Sbjct: 138 MMDEYDRVAQNQNPRASRLRLFLFTKNVAGEEDNDSRASSISSLLDSSVNREQWFLDALN 197
Query: 57 NGAAP--------GSG--LERGRSEASSIFSEAPDYLFGLENSDETQP-RELKPKS-RLM 104
G++ GSG ER RSE SSI SE PDYLFGL+N DET P EL+ + R
Sbjct: 198 LGSSAAATAVSNGGSGRVFERVRSEVSSIVSEVPDYLFGLDNFDETAPPHELRDRDPRAK 257
Query: 105 LHDNVS-VSDPGSPAPVVSSPFCSTSSGPTVP-SMPDLPP-VKTKPDNPAPVLESKHSGQ 161
+ VS +SDPGSP V SP+ STSS P + S P+LPP V KP++P PV K + Q
Sbjct: 258 IQREVSTLSDPGSPRRDVPSPYGSTSSAPVMRISTPELPPPVFIKPESPEPVSTPKSNPQ 317
Query: 162 IDGFSELQAVQQTGYSGQPMWHYV----SETRYSSPAVQQKTPVYYVPG--P----VQTG 211
+ Q +QQ+ W Y + Y + Q +PVYYVPG P VQ G
Sbjct: 318 PE-----QVMQQSNLPVNSQWQYAPGPGQQVHYQGHTIHQ-SPVYYVPGSVPGNHMVQQG 371
Query: 212 NAPVQQAG----PIR--AQYVPQYQVPPGGQIPVGYHXXXXXXXXXXXXAVRSVVTMDHS 265
N VQ P++ QY+ QY +P+GYH V
Sbjct: 372 NHMVQPGNHMVQPVQMPGQYLQQYH-----HVPMGYHQPQTHQMAGPGQVYGGTV----- 421
Query: 266 YDQPVRVVSADGVNQQVYYGVRNAGLVPGYP---GMMIPGGEELR--KSGSDATPGRIS 319
+PV +++ DG+N+ YYG++ G V Y GM++PG EE + ++ +D+ GR S
Sbjct: 422 --RPV-MMAVDGMNRTGYYGMKTPGPVQMYQHHTGMVVPGVEEQQQYRTETDSDTGRAS 477
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| TAIR|locus:2038836 PDE331 "PIGMENT DEFECTIVE 331" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00013172001 | SubName- Full=Chromosome undetermined scaffold_448, whole genome shotgun sequence; (427 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 321 | |||
| cd06410 | 97 | cd06410, PB1_UP2, Uncharacterized protein 2 | 0.002 |
| >gnl|CDD|99731 cd06410, PB1_UP2, Uncharacterized protein 2 | Back alignment and domain information |
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Score = 36.4 bits (85), Expect = 0.002
Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 4/24 (16%)
Query: 1 MIEEYDRLAQNQNTRSARLRLFLF 24
M+EEYDRL + SARLR+FLF
Sbjct: 78 MMEEYDRL----SGGSARLRVFLF 97
|
The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. Length = 97 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
No hit with probability above 80.00
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 321 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-06 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Score = 46.8 bits (110), Expect = 6e-06
Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 30/121 (24%)
Query: 3 EEYDRLAQNQNTRSARLRLF--LFTKGEDSVSRASSISSLLDASTNREHWFFDAINNGAA 60
EE D + +++ S LRLF L +K E+ V + + +L N + + I
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF--VEEVLR--INYK-FLMSPIKT--- 100
Query: 61 PGSGLERGRSEASSIFSEAPDYLFGLENSDETQ---PR------------ELKPKSRLML 105
+R S + ++ E D L+ +N + R EL+P +++
Sbjct: 101 ----EQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 106 H 106
Sbjct: 156 D 156
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00