Citrus Sinensis ID: 044963

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
Protein Sequence
MDIRKLYHLGSRTIELDRCCDERRPVNSPPPSSPSEGQSKLRWIVLLMKFKKEKRKMFQVPYDAYTYSQNFDQGFAWDEPDSFSRSFSVRFADPNRIFLMKSQG
Secondary Structure (PSIPRED)
ccccccccccccEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHcccccccccccccccccccEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccEEEEccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHEEEccccccHccccccccccccccccccccEEEEEcccccEEEEEccc
Coil and Loop (DISEMBL)
mdirklyhlgsrtieldrccderrpvnspppsspsegqsKLRWIVLLMKFKKEKRKMfqvpydaytysqnfdqgfawdepdsfsrsfsvrfadpnrIFLMKSQG
Flexible Loop (DISEMBL)
mdirklyhlgsrtieldrccderrpvnspppsspsegqsklRWIVLLMKFKKEKRKMFQVPYDAYTYSQNFDQGFAWDEPDSFSRSfsvrfadpnRIFLMKSQG
Low Complexity Region (SEG)
MDIRKLYHLGSRTIELDRCCDERRPVNspppsspsEGQSKLRWIVLLMKFKKEKRKMFQVPYDAYTYSQNFDQGFAWDEPDSFSRSFSVRFADPNRIFLMKSQG
Disordered region (IsUnstruct)
*****LYHLGSRTIELDRC*********************LRWIVLLMKFKKEKRKMFQVPYDAYTYSQNFDQGFAWDEPDSFSRSFSVRFADPNRIF******
Disordered Region (DISOPRED)
*D******LGS*****************************LRWIVLLMKFK**********YDAYTYSQNFDQGFAWDEPDSFSRSFSVRFADPNRIFLM****
Disordered Region (DISEMBL)
MDIRKLYHLGSRTIELDRCCDER***************SKLRWIVLLMKFKKEKRKMFQVPYDAYTYSQNFDQGFAWDEPDSFSRSFSVRFADPNRIFLMKSQG
Disordered Region (DISPRO)
MDIRKLYHLGSRTIELDRCCDERRPVN***********SKLRWIVLLMKFKKEKRKMFQVPYDAYTYSQNFDQGFAWDEPDSFSRSFSVRFADPNRIFLMKS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDIRKLYHLGSRTIELDRCCDERRPVNSPPPSSPSEGQSKLRWIVLLMKFKKEKRKMFQVPYDAYTYSQNFDQGFAWDEPDSFSRSFSVRFADPNRIFLMKSQG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
356513133	106	PREDICTED: uncharacterized protein LOC10	0.961	0.943	0.527	2e-16
357518713	108	hypothetical protein MTR_8g083490 [Medic	0.875	0.842	0.5	7e-11
326488048	163	predicted protein [Hordeum vulgare subsp	0.701	0.447	0.408	2e-09
255550060	123	conserved hypothetical protein [Ricinus	0.548	0.463	0.537	3e-09
242051821	175	hypothetical protein SORBIDRAFT_03g00367	0.365	0.217	0.710	1e-08
356507865	115	PREDICTED: uncharacterized protein LOC10	0.913	0.826	0.405	2e-08
297596229	171	Os01g0182300 [Oryza sativa Japonica Grou	0.384	0.233	0.65	2e-08
125524682	167	hypothetical protein OsI_00660 [Oryza sa	0.384	0.239	0.65	2e-08
224089072	100	predicted protein [Populus trichocarpa]	0.567	0.59	0.5	3e-08
255551074	118	conserved hypothetical protein [Ricinus	0.634	0.559	0.438	3e-08

>gi|356513133|ref|XP_003525268.1| PREDICTED: uncharacterized protein LOC100818788 [Glycine max]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 71/110 (64%), Gaps = 10/110 (9%)

Query: 1   MDIRKLYHLGSRTIELDRCCDERRPVNSPPPSSPSEGQSKLRWIVLLMKFKK------EK 54
           MDI+   + G RTI+L +  +E   +NS   +  S   +KLRW +L MK KK      E 
Sbjct: 1   MDIKGWCNSGRRTIQLGKSYNEIEHINSLSATGTS---NKLRWKLLWMKLKKEKKKIFES 57

Query: 55  RKMFQVPYDAYTYSQNFDQGFAWDEPDSFSRSFSVRFADPNRIFLMKSQG 104
              FQVPYD YTYSQNFDQG A DEPD+ SRSFSVRFADP+ I L+K +G
Sbjct: 58  ASSFQVPYDQYTYSQNFDQGTALDEPDNLSRSFSVRFADPS-IVLVKRKG 106

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518713|ref|XP_003629645.1| hypothetical protein MTR_8g083490 [Medicago truncatula] gi|357521037|ref|XP_003630807.1| hypothetical protein MTR_8g103630 [Medicago truncatula] gi|355523667|gb|AET04121.1| hypothetical protein MTR_8g083490 [Medicago truncatula] gi|355524829|gb|AET05283.1| hypothetical protein MTR_8g103630 [Medicago truncatula]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 11/102 (10%)

Query: 1  MDIRKLYHLGSRTIELDRCCDERRPVNSPPPSSPSEGQSKLRWIVLLMKFKKEKRK---- 56
          MDI+   +   +T EL R C E    NS   ++ S   SK RW +L MK KKEK+K    
Sbjct: 1  MDIKSECNSSRKTKELGRFCYEIEHTNSLSATTRS---SKFRWKMLWMKLKKEKKKLLES 57

Query: 57 ----MFQVPYDAYTYSQNFDQGFAWDEPDSFSRSFSVRFADP 94
              + Q PYD +TYSQNF+QG  +DEPD  SRSFSVRFADP
Sbjct: 58 TSSPLQQDPYDPFTYSQNFEQGTVFDEPDYLSRSFSVRFADP 99

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326488048|dbj|BAJ89863.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 51/93 (54%), Gaps = 20/93 (21%)

Query: 24  RPVNSPPPSSPSEG-QSKLRWIVLLMKFKKEKRKMFQV-----------------PYDAY 65
           R   +PP ++ S G  +KLR   L  K  +EK+++                    PYDAY
Sbjct: 68  RGGRAPPAAASSRGCGTKLRG--LWRKIVREKKRILLCSTGCVPVGGSSAAAAREPYDAY 125

Query: 66  TYSQNFDQGFAWDEPDSFSRSFSVRFADPNRIF 98
           +Y+QNFD G AW EPD+ SRSFS RFA P+R+ 
Sbjct: 126 SYAQNFDDGAAWVEPDNLSRSFSARFAVPSRVL 158

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550060|ref|XP_002516081.1| conserved hypothetical protein [Ricinus communis] gi|223544986|gb|EEF46501.1| conserved hypothetical protein [Ricinus communis]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 42/67 (62%), Gaps = 10/67 (14%)

Query: 42  RWIVLLMKFKKEKRKMF---------QVPYDAYTYSQNFDQGFA-WDEPDSFSRSFSVRF 91
           RW +L  K  KEK+K+F            YD YTY+QNFDQG + W +PDS SRSFS RF
Sbjct: 50  RWRLLWRKIMKEKKKLFDCSSSSDRMHFSYDPYTYAQNFDQGSSMWSDPDSMSRSFSARF 109

Query: 92  ADPNRIF 98
           A P RIF
Sbjct: 110 AVPARIF 116

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242051821|ref|XP_002455056.1| hypothetical protein SORBIDRAFT_03g003675 [Sorghum bicolor] gi|241927031|gb|EES00176.1| hypothetical protein SORBIDRAFT_03g003675 [Sorghum bicolor]

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 32/38 (84%)

Query: 61  PYDAYTYSQNFDQGFAWDEPDSFSRSFSVRFADPNRIF 98
           PYDAY+Y+QNFD G AW EPD+ SRSFS RFA P+R+F
Sbjct: 133 PYDAYSYAQNFDDGEAWVEPDNLSRSFSARFAVPSRVF 170

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507865|ref|XP_003522683.1| PREDICTED: uncharacterized protein LOC100798503 [Glycine max]

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 16/111 (14%)

Query: 1   MDIRKLYHLGSRT-----IELDRCCDERRPVNSPPPSSPSEGQSKLRWIVLLMKFKK--E 53
           MD++K Y  GSR+     I L R  +  +P       S  +G     W +L  K K+  +
Sbjct: 1   MDVKK-YWFGSRSQRTQNIRLGR--NYTKPHYRSYSPSSCDGTKTTVWQMLWRKLKRSSD 57

Query: 54  KRKMF------QVPYDAYTYSQNFDQGFAWDEPDSFSRSFSVRFADPNRIF 98
           K+K+F      +  YD  TYS NFDQG  W EPD+  RSFS RFADP+RI 
Sbjct: 58  KKKVFSSHTTMEGVYDQETYSMNFDQGTGWMEPDNLPRSFSARFADPSRIL 108

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297596229|ref|NP_001042217.2| Os01g0182300 [Oryza sativa Japonica Group] gi|55296269|dbj|BAD68049.1| unknown protein [Oryza sativa Japonica Group] gi|125569288|gb|EAZ10803.1| hypothetical protein OsJ_00638 [Oryza sativa Japonica Group] gi|215693036|dbj|BAG88456.1| unnamed protein product [Oryza sativa Japonica Group] gi|255672942|dbj|BAF04131.2| Os01g0182300 [Oryza sativa Japonica Group]

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 59  QVPYDAYTYSQNFDQGFAWDEPDSFSRSFSVRFADPNRIF 98
           +VPYDAY+Y+QNFD G AW EP++ SRSFS RFA P+R+ 
Sbjct: 127 RVPYDAYSYAQNFDDGAAWVEPENLSRSFSARFAVPSRVL 166

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125524682|gb|EAY72796.1| hypothetical protein OsI_00660 [Oryza sativa Indica Group]

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 59  QVPYDAYTYSQNFDQGFAWDEPDSFSRSFSVRFADPNRIF 98
           +VPYDAY+Y+QNFD G AW EP++ SRSFS RFA P+R+ 
Sbjct: 123 RVPYDAYSYAQNFDDGAAWVEPENLSRSFSARFAVPSRVL 162

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089072|ref|XP_002308624.1| predicted protein [Populus trichocarpa] gi|222854600|gb|EEE92147.1| predicted protein [Populus trichocarpa]

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 39/66 (59%), Gaps = 7/66 (10%)

Query: 40 KLRWIVLLMKFKKEKRKMF-------QVPYDAYTYSQNFDQGFAWDEPDSFSRSFSVRFA 92
          K RW V   K  + K+K+F       Q  YD   YSQNFDQG  W EP+  SRSFS R+A
Sbjct: 28 KPRWQVFWRKINRGKKKIFNVSPVTSQASYDLDEYSQNFDQGTDWAEPEILSRSFSARYA 87

Query: 93 DPNRIF 98
          DP+RI 
Sbjct: 88 DPSRIL 93

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551074|ref|XP_002516585.1| conserved hypothetical protein [Ricinus communis] gi|223544405|gb|EEF45926.1| conserved hypothetical protein [Ricinus communis]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 7/73 (9%)

Query: 37  GQSKLRWIVLLMKFKKEKRKMF-------QVPYDAYTYSQNFDQGFAWDEPDSFSRSFSV 89
             +K  W  L  +  +EK+K+F       Q  YD   Y QNFD G  W EPD+ SRSFS 
Sbjct: 37  NNNKWAWHRLWRRISREKKKIFSSVPVTLQASYDPQEYHQNFDHGTGWTEPDNLSRSFSA 96

Query: 90  RFADPNRIFLMKS 102
           RFADP+   L+K+
Sbjct: 97  RFADPSVSKLIKN 109

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
TAIR|locus:505006273	119	AT2G25735 "AT2G25735" [Arabido	0.538	0.470	0.516	2.9e-09

TAIR|locus:505006273 AT2G25735 "AT2G25735" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 32/62 (51%), Positives = 37/62 (59%)

Query:    42 RWIVLLMKFKKEKRKMFQ---VPYDAYTYSQNFDQGFAW---DEPDSFSRSFSVRFADPN 95
             +W VLLMK K    +      V Y+   YS NFDQG  W   DEP++ SRSFS RFADP 
Sbjct:    50 KWKVLLMKLKLLPSRASSTKVVAYEPCDYSLNFDQGPGWHDHDEPENLSRSFSCRFADPT 109

Query:    96 RI 97
             RI
Sbjct:   110 RI 111


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.139   0.435    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      104        96   0.00091  102 3  11 22  0.46    29
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  564 (60 KB)
  Total size of DFA:  124 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.35u 0.10s 9.45t   Elapsed:  00:00:01
  Total cpu time:  9.35u 0.10s 9.45t   Elapsed:  00:00:01
  Start:  Fri May 10 19:18:01 2013   End:  Fri May 10 19:18:02 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006979 "response to oxidative stress" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Sb03g003675.1 hypothetical protein (175 aa) (Sorghum bicolor)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00