Citrus Sinensis ID: 045375

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIGGFGASLGSLYFISLPCSFL
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccc
Coil and Loop (DISEMBL)
malsnnvigpINLVAVLLSIPVIGARIWLAIEADnscvkllqwPVIILGILILVVALAGFIGGFGASLGSLYFISLPCSFL
Flexible Loop (DISEMBL)
malsnnviGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIGGFGASLGSLYFISLPCSFL
Low Complexity Region (SEG)
MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPviilgililvvalagFIGGFGASLGSLYFISLPCSFL
Disordered region (IsUnstruct)
*****NVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIGGFGASLGSLYFISLPCS**
Disordered Region (DISOPRED)
***SNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIGGFGASLGSLYFISLPCSFL
Disordered Region (DISEMBL)
MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIGGFGASLGSLYFISLPCSFL
Disordered Region (DISPRO)
*ALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIGGFGASLGSLYFISLPCSFL
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIGGFGASLGSLYFISLPCSFL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
Q9FIQ5	269	Protein TORNADO 2 OS=Arab	yes	no	0.790	0.237	0.812	2e-14
Q9M1E7	285	Tetraspanin-3 OS=Arabidop	no	no	0.765	0.217	0.507	2e-11
Q9ZUN5	270	Tetraspanin-2 OS=Arabidop	no	no	0.790	0.237	0.562	3e-09
Q9C7C1	282	Tetraspanin-6 OS=Arabidop	no	no	0.740	0.212	0.459	6e-09
Q9M0B7	272	Tetraspanin-9 OS=Arabidop	no	no	0.740	0.220	0.366	2e-08
Q8S8Q6	273	Tetraspanin-8 OS=Arabidop	no	no	0.728	0.216	0.457	2e-08
Q9SUD4	263	Tetraspanin-7 OS=Arabidop	no	no	0.740	0.228	0.416	8e-08
Q9LSS4	327	Tetraspanin-4 OS=Arabidop	no	no	0.765	0.189	0.492	5e-06

>sp|Q9FIQ5|TRN2_ARATH Protein TORNADO 2 OS=Arabidopsis thaliana GN=TRN2 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/64 (81%), Positives = 55/64 (85%)

Query: 1  MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGF 60
          M LSNNVIG IN + VLLSIPVIGA IWLAI   NSCVKLLQWPVIILG+LIL+V LAGF
Sbjct: 1  MPLSNNVIGCINFITVLLSIPVIGAGIWLAIGTVNSCVKLLQWPVIILGVLILLVGLAGF 60

Query: 61 IGGF 64
          IGGF
Sbjct: 61 IGGF 64

Involved in the basipetal transport of auxin (IAA) that modulates growth and organs organization, as well as cell differentiation. Regulates shoot apical meristem (SAM) organization in the peripheral zone. Required for initial meristematic divisions in the epidermal/lateral root cap leading to the formation of epidermal cells and a clone of lateral root cap cells, as well as for the maintenance of the radial pattern of cell specification in the root, thus regulating the distinction between the lateral root cap and epidermis. Together with WIH peptides, promotes megasporogenesis.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1E7|TET3_ARATH Tetraspanin-3 OS=Arabidopsis thaliana GN=TET3 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 49/63 (77%), Gaps = 1/63 (1%)

Query: 1  MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNS-CVKLLQWPVIILGILILVVALAG 59
          M  SN++IG +N +  LLSIP++G  IWL+  A+++ C++ LQWP+I++GI I+VV+LAG
Sbjct: 1  MRTSNHLIGLVNFLTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIVIGISIMVVSLAG 60

Query: 60 FIG 62
          F G
Sbjct: 61 FAG 63

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUN5|TET2_ARATH Tetraspanin-2 OS=Arabidopsis thaliana GN=TET2 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 50/64 (78%)

Query: 1  MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGF 60
          MAL+NN+   +NL+A+L SIP+  + IWLA + DN CV LL+WPV++LG+LILVV+  GF
Sbjct: 1  MALANNLTAILNLLALLCSIPITASGIWLASKPDNECVNLLRWPVVVLGVLILVVSATGF 60

Query: 61 IGGF 64
          IG +
Sbjct: 61 IGAY 64

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7C1|TET6_ARATH Tetraspanin-6 OS=Arabidopsis thaliana GN=TET6 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 43/61 (70%), Gaps = 1/61 (1%)

Query: 3  LSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIG 62
           SN VIG +NL+ +L SIP+IG  ++ A  +  +C   LQ P++++G +IL+V+LAGFIG
Sbjct: 4  FSNTVIGVLNLLTLLASIPIIGTALYKA-RSSTTCENFLQTPLLVIGFIILIVSLAGFIG 62

Query: 63 G 63
           
Sbjct: 63 A 63

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0B7|TET9_ARATH Tetraspanin-9 OS=Arabidopsis thaliana GN=TET9 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 41/60 (68%)

Query: 3  LSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIG 62
           SN+++G +N    LLS+P++   IWL+++A   C + L  P+I LG+ ++++A+AG +G
Sbjct: 4  FSNSLVGILNFFVFLLSVPILSTGIWLSLKATTQCERFLDKPMIALGVFLMIIAIAGVVG 63

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8Q6|TET8_ARATH Tetraspanin-8 OS=Arabidopsis thaliana GN=TET8 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 40/59 (67%)

Query: 4  SNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIG 62
          SNN++G +N +  LLSIP++   IWL+ +    C + L  PVI LG+ ++VVA+AG IG
Sbjct: 5  SNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAGLIG 63

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUD4|TET7_ARATH Tetraspanin-7 OS=Arabidopsis thaliana GN=TET7 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 39/60 (65%)

Query: 4  SNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGFIGG 63
          SNN++G +N    LLSIP++ A IWL   A   C + L  P+++LGI ++ V++AG +G 
Sbjct: 5  SNNLLGILNFFTFLLSIPILSAGIWLGKNAATECERFLDKPMVVLGIFLMFVSIAGLVGA 64

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSS4|TET4_ARATH Tetraspanin-4 OS=Arabidopsis thaliana GN=TET4 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 46/63 (73%), Gaps = 1/63 (1%)

Query: 1  MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNS-CVKLLQWPVIILGILILVVALAG 59
          M   +N+IG IN    LLSIP++G  IWL+  A+++ C++ LQWP+II+GI I+V++LAG
Sbjct: 1  MRSRSNLIGLINFFTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIIIGISIMVISLAG 60

Query: 60 FIG 62
            G
Sbjct: 61 IAG 63

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
255554749	269	conserved hypothetical protein [Ricinus	0.790	0.237	0.843	2e-21
224074285	269	predicted protein [Populus trichocarpa]	0.790	0.237	0.843	5e-21
225427187	269	PREDICTED: uncharacterized protein LOC10	0.790	0.237	0.796	5e-20
356495865	269	PREDICTED: uncharacterized protein LOC10	0.790	0.237	0.781	5e-19
356496392	269	PREDICTED: uncharacterized protein LOC10	0.790	0.237	0.75	9e-19
356531423	269	PREDICTED: uncharacterized protein LOC10	0.790	0.237	0.75	1e-18
449462065	269	PREDICTED: uncharacterized protein LOC10	0.790	0.237	0.75	2e-18
255648214	269	unknown [Glycine max]	0.790	0.237	0.75	7e-17
224138936	269	predicted protein [Populus trichocarpa]	0.790	0.237	0.828	2e-16
388519771	185	unknown [Lotus japonicus]	0.790	0.345	0.75	2e-16

>gi|255554749|ref|XP_002518412.1| conserved hypothetical protein [Ricinus communis] gi|223542257|gb|EEF43799.1| conserved hypothetical protein [Ricinus communis]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/64 (84%), Positives = 60/64 (93%)

Query: 1  MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGF 60
          MALSNNVIG IN VA+LLSIP+IGA IWLA+E DNSCV++LQWPVIILGILILVVALAGF
Sbjct: 1  MALSNNVIGAINFVAMLLSIPIIGAGIWLAMEPDNSCVRILQWPVIILGILILVVALAGF 60

Query: 61 IGGF 64
          +GGF
Sbjct: 61 VGGF 64

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074285|ref|XP_002304338.1| predicted protein [Populus trichocarpa] gi|222841770|gb|EEE79317.1| predicted protein [Populus trichocarpa]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/64 (84%), Positives = 58/64 (90%)

Query: 1  MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGF 60
          MALSNNVIG IN VA+LLSIPVIGA IWLA E DNSCVK+LQWPVIILG+LIL VALAGF
Sbjct: 1  MALSNNVIGAINFVAMLLSIPVIGAGIWLATEPDNSCVKILQWPVIILGMLILKVALAGF 60

Query: 61 IGGF 64
          +GGF
Sbjct: 61 VGGF 64

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427187|ref|XP_002278741.1| PREDICTED: uncharacterized protein LOC100266064 [Vitis vinifera] gi|147774778|emb|CAN69080.1| hypothetical protein VITISV_042237 [Vitis vinifera] gi|297742090|emb|CBI33877.3| unnamed protein product [Vitis vinifera]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 51/64 (79%), Positives = 57/64 (89%)

Query: 1  MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGF 60
          MAL+N VIG IN VA+LLSIP+IG  IWL+ E DNSCVK+LQWPVIILG+LILVVALAGF
Sbjct: 1  MALNNTVIGAINFVAMLLSIPIIGTGIWLSTEPDNSCVKILQWPVIILGVLILVVALAGF 60

Query: 61 IGGF 64
          IGGF
Sbjct: 61 IGGF 64

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495865|ref|XP_003516791.1| PREDICTED: uncharacterized protein LOC100789266 [Glycine max]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/64 (78%), Positives = 55/64 (85%)

Query: 1  MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGF 60
          MALSNNVIG IN VAVLLSIP+IGA IWL  E  +SCVK+LQWP+IILG+LI VVALAGF
Sbjct: 1  MALSNNVIGAINFVAVLLSIPIIGAGIWLTTEPADSCVKILQWPIIILGVLIFVVALAGF 60

Query: 61 IGGF 64
          IG F
Sbjct: 61 IGAF 64

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496392|ref|XP_003517052.1| PREDICTED: uncharacterized protein LOC100795775 [Glycine max]

 Score = 97.4 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 48/64 (75%), Positives = 54/64 (84%)

Query: 1  MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGF 60
          MA+SNNVIG IN VAV+LSIP+IGA IWL     +SCV+ LQWPVIILG+LILVVALAGF
Sbjct: 1  MAMSNNVIGCINFVAVILSIPIIGAGIWLTNGDADSCVQFLQWPVIILGVLILVVALAGF 60

Query: 61 IGGF 64
          IG F
Sbjct: 61 IGAF 64

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531423|ref|XP_003534277.1| PREDICTED: uncharacterized protein LOC100791755 [Glycine max]

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/64 (75%), Positives = 54/64 (84%)

Query: 1  MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGF 60
          MA+SNNVIG IN VAV+LSIP+IGA IWL     +SCV+ LQWPVIILG+LILVVALAGF
Sbjct: 1  MAMSNNVIGCINFVAVILSIPIIGAGIWLLNGEADSCVQFLQWPVIILGVLILVVALAGF 60

Query: 61 IGGF 64
          IG F
Sbjct: 61 IGAF 64

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462065|ref|XP_004148762.1| PREDICTED: uncharacterized protein LOC101210867 [Cucumis sativus] gi|449515277|ref|XP_004164676.1| PREDICTED: uncharacterized protein LOC101223573 [Cucumis sativus]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 56/64 (87%)

Query: 1  MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGF 60
          MALSNNVI  IN +A++LSIPVIGA IWLA E DN+CV++LQWPVIILGI+I +VALAGF
Sbjct: 1  MALSNNVIAAINFIALILSIPVIGAGIWLATEPDNACVQVLQWPVIILGIVIFLVALAGF 60

Query: 61 IGGF 64
          IG F
Sbjct: 61 IGAF 64

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255648214|gb|ACU24560.1| unknown [Glycine max]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 54/64 (84%)

Query: 1  MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGF 60
          MA+SNNVIG IN VAV+LSIP+IGA IWL     +SCV+ LQWPVIILG+LILVVALAGF
Sbjct: 1  MAMSNNVIGCINFVAVILSIPIIGAGIWLLNGEADSCVQFLQWPVIILGVLILVVALAGF 60

Query: 61 IGGF 64
          IG F
Sbjct: 61 IGAF 64

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138936|ref|XP_002326727.1| predicted protein [Populus trichocarpa] gi|222834049|gb|EEE72526.1| predicted protein [Populus trichocarpa]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/64 (82%), Positives = 60/64 (93%)

Query: 1  MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGF 60
          MALS+NVIG IN VA+LLSIP+IGA IWLA+E DNSCVK+LQWPVIILGILIL+VALAGF
Sbjct: 1  MALSSNVIGAINFVAMLLSIPIIGAGIWLAMEPDNSCVKILQWPVIILGILILIVALAGF 60

Query: 61 IGGF 64
          +GGF
Sbjct: 61 VGGF 64

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519771|gb|AFK47947.1| unknown [Lotus japonicus]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 53/64 (82%)

Query: 1  MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPVIILGILILVVALAGF 60
          MA+SNNVIG +N VAVLLSIP+IGA IWL   A +SCV  LQWPVIILG+LILVVALAG 
Sbjct: 1  MAMSNNVIGAVNFVAVLLSIPIIGAGIWLMNGAADSCVSFLQWPVIILGVLILVVALAGC 60

Query: 61 IGGF 64
          IG F
Sbjct: 61 IGAF 64

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
TAIR|locus:2178570	269	TRN2 "AT5G46700" [Arabidopsis	0.790	0.237	0.625	1.4e-14
TAIR|locus:2050354	270	TET2 "AT2G19580" [Arabidopsis	0.790	0.237	0.421	2.6e-09
TAIR|locus:2085692	285	TET3 "AT3G45600" [Arabidopsis	0.543	0.154	0.466	8.7e-07
TAIR|locus:2144050	327	TET4 "tetraspanin4" [Arabidops	0.543	0.134	0.466	6.7e-06
TAIR|locus:2132992	263	TET7 "AT4G28050" [Arabidopsis	0.506	0.155	0.439	0.00042
TAIR|locus:2118696	272	TET9 "AT4G30430" [Arabidopsis	0.506	0.150	0.365	0.00058
TAIR|locus:2048982	273	TET8 "AT2G23810" [Arabidopsis	0.506	0.150	0.390	0.00058

TAIR|locus:2178570 TRN2 "AT5G46700" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 40/64 (62%), Positives = 41/64 (64%)

Query:     1 MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPXXXXXXXXXXXXXXXF 60
             M LSNNVIG IN + VLLSIPVIGA IWLAI   NSCVKLLQWP               F
Sbjct:     1 MPLSNNVIGCINFITVLLSIPVIGAGIWLAIGTVNSCVKLLQWPVIILGVLILLVGLAGF 60

Query:    61 IGGF 64
             IGGF
Sbjct:    61 IGGF 64

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009933 "meristem structural organization" evidence=IMP

GO:0009956 "radial pattern formation" evidence=IMP

GO:0010015 "root morphogenesis" evidence=RCA;IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0040007 "growth" evidence=RCA

TAIR|locus:2050354 TET2 "AT2G19580" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 2.6e-09, P = 2.6e-09
 Identities = 27/64 (42%), Positives = 37/64 (57%)

Query:     1 MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWPXXXXXXXXXXXXXXXF 60
             MAL+NN+   +NL+A+L SIP+  + IWLA + DN CV LL+WP               F
Sbjct:     1 MALANNLTAILNLLALLCSIPITASGIWLASKPDNECVNLLRWPVVVLGVLILVVSATGF 60

Query:    61 IGGF 64
             IG +
Sbjct:    61 IGAY 64

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2085692 TET3 "AT3G45600" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 8.7e-07, P = 8.7e-07
 Identities = 21/45 (46%), Positives = 33/45 (73%)

Query:     1 MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNS-CVKLLQWP 44
             M  SN++IG +N +  LLSIP++G  IWL+  A+++ C++ LQWP
Sbjct:     1 MRTSNHLIGLVNFLTFLLSIPILGGGIWLSSRANSTDCLRFLQWP 45

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2144050 TET4 "tetraspanin4" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 6.7e-06, P = 6.7e-06
 Identities = 21/45 (46%), Positives = 31/45 (68%)

Query:     1 MALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNS-CVKLLQWP 44
             M   +N+IG IN    LLSIP++G  IWL+  A+++ C++ LQWP
Sbjct:     1 MRSRSNLIGLINFFTFLLSIPILGGGIWLSSRANSTDCLRFLQWP 45

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2132992 TET7 "AT4G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00042, P = 0.00042
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query:     4 SNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWP 44
             SNN++G +N    LLSIP++ A IWL   A   C + L  P
Sbjct:     5 SNNLLGILNFFTFLLSIPILSAGIWLGKNAATECERFLDKP 45

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

TAIR|locus:2118696 TET9 "AT4G30430" [Arabidopsis thaliana (taxid:3702)]

 Score = 92 (37.4 bits), Expect = 0.00058, P = 0.00058
 Identities = 15/41 (36%), Positives = 26/41 (63%)

Query:     4 SNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWP 44
             SN+++G +N    LLS+P++   IWL+++A   C + L  P
Sbjct:     5 SNSLVGILNFFVFLLSVPILSTGIWLSLKATTQCERFLDKP 45

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2048982 TET8 "AT2G23810" [Arabidopsis thaliana (taxid:3702)]

 Score = 92 (37.4 bits), Expect = 0.00058, P = 0.00058
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query:     4 SNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVKLLQWP 44
             SNN++G +N +  LLSIP++   IWL+ +    C + L  P
Sbjct:     5 SNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKP 45


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.145   0.462    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       81        66   0.00091  102 3  11 22  0.38    28
                                                     29  0.48    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  523 (56 KB)
  Total size of DFA:  92 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.76u 0.16s 5.92t   Elapsed:  00:00:00
  Total cpu time:  5.76u 0.16s 5.92t   Elapsed:  00:00:01
  Start:  Sat May 11 15:12:27 2013   End:  Sat May 11 15:12:28 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FIQ5	TRN2_ARATH	No assigned EC number	0.8125	0.7901	0.2379	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
KOG3882	237	consensus Tetraspanin family integral membrane pro	99.63
PF00335	221	Tetraspannin: Tetraspanin family RDS_ROM1 subfamil	99.06
KOG4433	526	consensus Tweety transmembrane/cell surface protei	87.84
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	81.04
PF11297	69	DUF3098: Protein of unknown function (DUF3098); In	80.88

>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]

Probab=99.63  E-value=9.5e-16  Score=108.45  Aligned_cols=77  Identities=19%  Similarity=0.273  Sum_probs=64.5

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhHhheeeeccchhhh----hhH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 045375            2 ALSNNVIGPINLVAVLLSIPVIGARIWLAIEADNSCVK----LLQ--WPVIILGILILVVALAGFIGGFGASLGSLYFIS   75 (81)
Q Consensus         2 ~~sn~ll~~~N~l~~l~gi~ilg~Giwl~~~~~~~c~~----~l~--~pli~~G~~i~lvs~lG~~GA~~~~~~lL~~f~   75 (81)
                      ++.+|+++.+|+++|+.|+.++++|+|+..+++..-.-    +..  +.++++|.+++++|++||+||.|||+|+|.+|+
T Consensus         7 ~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~~~~~~~~~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~   86 (237)
T KOG3882|consen    7 SCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLLESDFLVPAYILIAVGGVVFLVGFLGCCGALRESRCLLLSYF   86 (237)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhhccccchhcchhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHH
Confidence            47899999999999999999999999999876321111    122  237899999999999999999999999999998


Q ss_pred             hcc
Q 045375           76 LPC   78 (81)
Q Consensus        76 ~~~   78 (81)
                      +..
T Consensus        87 ~~l   89 (237)
T KOG3882|consen   87 ILL   89 (237)
T ss_pred             HHH
Confidence            764

>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []

Probab=99.06  E-value=2.5e-11  Score=81.00  Aligned_cols=77  Identities=23%  Similarity=0.376  Sum_probs=0.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhHhhe-eeeccc-----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhh
Q 045375            3 LSNNVIGPINLVAVLLSIPVIGARIWL-AIEADN-----SCVKLLQWPVIILGILILVVALAGFIGGFGASLGSLYFISL   76 (81)
Q Consensus         3 ~sn~ll~~~N~l~~l~gi~ilg~Giwl-~~~~~~-----~c~~~l~~pli~~G~~i~lvs~lG~~GA~~~~~~lL~~f~~   76 (81)
                      +.|+++.++|+++++.|+++++.|+|. ..+...     +..+.....++.+|.++++++++|++|+++||+|++..|.+
T Consensus         1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~   80 (221)
T PF00335_consen    1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEFSSSFISYVIIILIFIGIFILIISFLGCIGACRKNRCLLIIYII   80 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccc
Confidence            578999999999999999999999999 322211     11122233367789999999999999999999999999988


Q ss_pred             ccc
Q 045375           77 PCS   79 (81)
Q Consensus        77 ~~~   79 (81)
                      ...
T Consensus        81 ~~~   83 (221)
T PF00335_consen   81 LLI   83 (221)
T ss_dssp             ---
T ss_pred             chh
Confidence            654

CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.

>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]

Probab=87.84  E-value=1  Score=36.54  Aligned_cols=39  Identities=28%  Similarity=0.286  Sum_probs=32.5

Q ss_pred             hhHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhcc
Q 045375           40 LLQWP-VIILGILILVVALAGFIGGFGASLGSLYFISLPC   78 (81)
Q Consensus        40 ~l~~p-li~~G~~i~lvs~lG~~GA~~~~~~lL~~f~~~~   78 (81)
                      ..+|| .+++=.+.+++-+.+++|-.|+++|++..|+++-
T Consensus       207 ~~RW~~~v~lL~l~LvvC~v~vlglak~Skc~li~fsv~G  246 (526)
T KOG4433|consen  207 SYRWLAYVLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCG  246 (526)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHH
Confidence            35788 3555566889999999999999999999999874

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=81.04  E-value=5.3  Score=27.18  Aligned_cols=51  Identities=22%  Similarity=0.324  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHhHhheeeeccchhhhh----hHHHHHHHHHHHHHHHHHHH
Q 045375           10 PINLVAVLLSIPVIGARIWLAIEADNSCVKL----LQWPVIILGILILVVALAGF   60 (81)
Q Consensus        10 ~~N~l~~l~gi~ilg~Giwl~~~~~~~c~~~----l~~pli~~G~~i~lvs~lG~   60 (81)
                      +.+....+.|+.+++.|+-..+-...+....    +..-.+++|++++..++.-+
T Consensus         6 i~~i~~iilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~   60 (191)
T PF04156_consen    6 IISIILIILGILLIASGIAALVLFISGLGALISFILGIALLALGVVLLSLGLLCL   60 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567778888888888875543221111111    11224556666666655444

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function

Probab=80.88  E-value=3.6  Score=25.07  Aligned_cols=23  Identities=22%  Similarity=0.171  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHhHhheeee
Q 045375           10 PINLVAVLLSIPVIGARIWLAIE   32 (81)
Q Consensus        10 ~~N~l~~l~gi~ilg~Giwl~~~   32 (81)
                      --|...+..|++++.+|-++..-
T Consensus         5 k~Nyill~iG~~vIilGfilMsg   27 (69)
T PF11297_consen    5 KKNYILLAIGIAVIILGFILMSG   27 (69)
T ss_pred             hHHHHHHHHHHHHHHHHHHheeC
Confidence            35889999999999999887663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00