Citrus Sinensis ID: 045447
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2058 | 2.2.26 [Sep-21-2011] | |||||||
| A4GSN8 | 2093 | Nuclear-pore anchor OS=Ar | yes | no | 0.978 | 0.962 | 0.554 | 0.0 | |
| P12270 | 2363 | Nucleoprotein TPR OS=Homo | yes | no | 0.564 | 0.491 | 0.234 | 5e-36 | |
| O74424 | 1837 | Nucleoporin nup211 OS=Sch | yes | no | 0.585 | 0.655 | 0.234 | 3e-15 | |
| Q02455 | 1875 | Protein MLP1 OS=Saccharom | yes | no | 0.275 | 0.302 | 0.215 | 1e-07 |
| >sp|A4GSN8|NUA_ARATH Nuclear-pore anchor OS=Arabidopsis thaliana GN=NUA PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 2044 bits (5295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1163/2096 (55%), Positives = 1531/2096 (73%), Gaps = 82/2096 (3%)
Query: 1 MPLFVSDEEMSRLSNDAAAVAA-KADAYIRYLQTDFETVKARADAAAITAEQTCSLLEQK 59
MPLF+ DEE++RLS+DAA+V A +AD YIR + + ++V+A+ADAA+ITAEQTCSLLEQK
Sbjct: 1 MPLFMPDEELARLSSDAASVVAERADEYIRKIYAELDSVRAKADAASITAEQTCSLLEQK 60
Query: 60 FISLQEEFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLHLQLIGKDGEIERLTMEVAEL 119
++SL ++FS +ESQNA+LQ DDR+ ELA+ Q+QKHQLHLQ I KDGE+ER++ E++EL
Sbjct: 61 YLSLSQDFSSLESQNAKLQSDFDDRLAELAQSQAQKHQLHLQSIEKDGEVERMSTEMSEL 120
Query: 120 HKSRRQLMELVEQKDLQHSEKGATIKAYLDKIINLTDNAAQREARLAETEAELARAQATC 179
HKS+RQLMEL+EQKD + SEK +TIK+YLDKI+ LTD ++++EARLAE AELAR+QA C
Sbjct: 121 HKSKRQLMELLEQKDAEISEKNSTIKSYLDKIVKLTDTSSEKEARLAEATAELARSQAMC 180
Query: 180 TRLTQGKELIERHNAWLNEELTSKVNSLVELRRTHADLEADMSAKLSDVERQFSECSSSL 239
+RL+Q KEL ERH WL+EELT+KV+S ELRR H+DLE++MSAKL DVE+ + ECSSSL
Sbjct: 181 SRLSQEKELTERHAKWLDEELTAKVDSYAELRRRHSDLESEMSAKLVDVEKNYIECSSSL 240
Query: 240 NWNKERVRELEIKLSSLQEEFCSSKDAAAANEERFSTELSTVNKLVELYKESSEEWSRKA 299
NW+KER+RELE K+ SLQE+ S KDAA EE+++ EL T NKLV+LYKESSEEWSRKA
Sbjct: 241 NWHKERLRELETKIGSLQEDLSSCKDAATTTEEQYTAELFTANKLVDLYKESSEEWSRKA 300
Query: 300 GELEGVIKALETQLAQVQNDCKEKLEKEVSAREQLEKEAMDLKEKLEKCEAEIESSRKTN 359
GELEGVIKALE +L+QV++ KE+L+KEVS ++ LEKE DLK+KLEKCEAEIE +RKT+
Sbjct: 301 GELEGVIKALEARLSQVESSYKERLDKEVSTKQLLEKENGDLKQKLEKCEAEIEKTRKTD 360
Query: 360 ELNLLPLSSFSTETWMESFDTNNISEDNRLLVPKIPAGVSGTALAASLLRDGWSLAKIYA 419
ELNL+P S+F+ +++ T+N+ E+++ ++ K+PAGVSGTALAASLLRDGWSLAKIY
Sbjct: 361 ELNLIPFSNFTRR--VDNSGTSNMIEESQAVISKVPAGVSGTALAASLLRDGWSLAKIYE 418
Query: 420 KYQEAVDALRHEQLGRKESEAVLQRVLYELEEKAGIILDERAEYERMVDAYSAINQKLQN 479
KYQEAVDA+RHEQLGRKE+E +LQRVL ELEEKAG I +ER EYER+V+AY +NQKLQ+
Sbjct: 419 KYQEAVDAMRHEQLGRKEAEMILQRVLSELEEKAGFIQEERGEYERVVEAYCLVNQKLQD 478
Query: 480 FISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLKECRDIQLRCGLSRIE 539
+SE+S++EK I ELKADLR RER+ L QK+ISDLQKQVT+LLKECRD+QLRCG +R +
Sbjct: 479 SVSEQSNMEKFIMELKADLRRRERENTLLQKDISDLQKQVTILLKECRDVQLRCGAARDD 538
Query: 540 FDDDAVAIADVELAPESDAEKIISEHLLTFKDINGLVEQNVQLRSLVRNLSDQIESREME 599
+DD ++DVE+ ES+A+KIISEHLL FKDINGLVEQNV+LR+LVR+LS+QIESRE E
Sbjct: 539 DEDDYPLLSDVEMEMESEADKIISEHLLKFKDINGLVEQNVKLRNLVRSLSEQIESRETE 598
Query: 600 FKDKLELELKKHTDEAASKVAAVLDRAEEQGRMIESLHTSVAMYKRLYEEEHKLHSSHTQ 659
K+ E++LK TDEA++KVA VL RAEEQG+MIESLHTSVAMYKRLYEEE KLHSS ++
Sbjct: 599 LKETFEVDLKNKTDEASAKVATVLKRAEEQGQMIESLHTSVAMYKRLYEEEQKLHSSDSR 658
Query: 660 YIEAAP---DGRKDLLLLLEGSQEATKRAQEKMAERVRCLEDDLGKARSEIIALRSERDK 716
+ +P GRK+ L LLE S+EATKRAQEK ER+R LE+D KARSE+IA+RSERDK
Sbjct: 659 SSDLSPAVVPGRKNFLHLLEDSEEATKRAQEKAFERIRILEEDFAKARSEVIAIRSERDK 718
Query: 717 LALEAEFAREKLDSVMREAEHQKVEVNGVLARNVEFSQLVVDYQRKLRETSESLNAAQEL 776
LA+EA FAREKL+ +M+E+E ++ E+N VLARN+EFSQL++D+QRKLRE+SESL+AA+E+
Sbjct: 719 LAMEANFAREKLEGIMKESERKREEMNSVLARNIEFSQLIIDHQRKLRESSESLHAAEEI 778
Query: 777 SRKLAMEVSVLKHEKEMLSNAEQRAYDEVRSLSQRVYRLQASLDTIQNAEEVREEARAAE 836
SRKL+MEVSVLK EKE+LSNAE+RA DEV +LSQRVYRLQA+LDT+Q+ EEVREE RAAE
Sbjct: 779 SRKLSMEVSVLKQEKELLSNAEKRASDEVSALSQRVYRLQATLDTVQSTEEVREETRAAE 838
Query: 837 RRKQEEYIKQVEREWAEAKKELQEERDNVRLLTSDREQTLKNAVKQVEEMGKELATALRA 896
RRKQEE+IKQ++REWAEAKKELQEER N R TSDR QTL NAV QVEEMGKELA AL+A
Sbjct: 839 RRKQEEHIKQLQREWAEAKKELQEERSNARDFTSDRNQTLNNAVMQVEEMGKELANALKA 898
Query: 897 VASAETRAAVAETKLSDMEKRIRPLDAKGDEVDDGS--RPSDE---VQLQVGKEELEKLK 951
V+ AE+RA+VAE +LSD+EK+IR D K ++D G SD+ ++L+ KEE+EKL+
Sbjct: 899 VSVAESRASVAEARLSDLEKKIRSSDPKTLDMDSGGIVSLSDKEMSIELRTAKEEIEKLR 958
Query: 952 EEAQANREHMLQYKSIAQVNEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELE 1011
E ++++ HMLQYKSIAQVNE ALK+ME+ HENFR E ++SLE EL SLR+RVSELE
Sbjct: 959 GEVESSKSHMLQYKSIAQVNETALKQMESAHENFRLEAEKRQRSLEAELVSLRERVSELE 1018
Query: 1012 RENILKSEEIASAAGVREDALASAREEITSLKEERSIKISQIVNLEVQVSALKEDLEKEH 1071
+ I KSE++A+AA +EDAL SA EI SL+EE +K SQI + +Q+S LK DLE EH
Sbjct: 1019 NDCIQKSEQLATAAAGKEDALLSASAEIASLREENLVKKSQIEAMNIQMSTLKNDLETEH 1078
Query: 1072 ERRQAAQANYERQVILQSETIQELTKTSQALASLQEQASELRKLADALKAENSELKSKWE 1131
E+ + AQ NYERQVIL SETIQELTKTSQALA+LQE+ASELRKLADA ENSEL +KW
Sbjct: 1079 EKWRVAQRNYERQVILLSETIQELTKTSQALAALQEEASELRKLADARGIENSELNAKWS 1138
Query: 1132 LEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTEKDGSSVRISSQSTDSNPIGD 1191
EK +LE+ KN AE+KY E+NEQNK+LHSRLEA H+ EK+ S ISS STDS+ + D
Sbjct: 1139 EEKLMLEQQKNLAEKKYHELNEQNKLLHSRLEAKHLNSAEKNSRSGTISSGSTDSDHLED 1198
Query: 1192 ASLQSVISFLRNRKSIAETEVALLTTEKLRLQKQLESALKAAENAQASLTTERANSRAML 1251
+ LQ V+ +LR K IAETE++L+ EKLRLQ QLESALK AE+A+ SLT ERA++RA L
Sbjct: 1199 SGLQRVVHYLRRTKEIAETEISLMRQEKLRLQSQLESALKMAESARGSLTAERASTRASL 1258
Query: 1252 LTEEEIKSLKLQVRELNLLRESNVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRE 1311
LT++ IKSL+LQV E+NLLRESN+QLREENK+NFE+CQ++REVAQK + + +N ENLL+
Sbjct: 1259 LTDDGIKSLQLQVSEMNLLRESNMQLREENKHNFEKCQEMREVAQKARMESENFENLLKT 1318
Query: 1312 RQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNA 1371
+Q E++ C KEMEK RME + +KRV EL + RNID+ DY+RLK EVRQ+EEKL K+A
Sbjct: 1319 KQTELDLCMKEMEKLRMETDLHKKRVDELRETYRNIDIADYNRLKDEVRQLEEKLKAKDA 1378
Query: 1372 EIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAA-------RKLEMEK 1424
E+ + +L K + IS LE+EL N + +LSE+EKRL D QA+A +K E+EK
Sbjct: 1379 HAEDCKKVLLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQATMQSEFNKQKQELEK 1438
Query: 1425 QKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQ--GKKSTGDVTGEQVMKEKEEK 1482
K+I L KEK+E K+NQSLA+QL++ K+ GK++T D EQ +KE+EEK
Sbjct: 1439 NKKIHYTLNMTKRKYEKEKDELSKQNQSLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEK 1498
Query: 1483 DTRIQILERTVE-------RQREELKKEKDDNQKEKEKRLKGEKVMLDSAKLADQWKTRI 1535
+ RIQIL++ V ++ E+LKK+ ++ KE+ +R EK + DS + KT++
Sbjct: 1499 EKRIQILDKYVHQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKV 1558
Query: 1536 SSE---LEQHKQAVKRLSDELEKLKHTEAGLPEGTSVVQLLSGTNLDDHASSYFSAVESF 1592
E LE+++ A+ LS+ELEKLKH + LPEGTS VQ+LSG+ L+D A++Y SAVE F
Sbjct: 1559 DEELAKLERYQTALTHLSEELEKLKHADGNLPEGTSAVQVLSGSILNDQAAAYVSAVEYF 1618
Query: 1593 ERVARSVIVELG-TCGPSE--TSLALDAAAAAATTGSAVATLAPVTASSAGPGTIHLPVK 1649
ERVARS+ + P++ T + AA +T + V + P+ S T LP
Sbjct: 1619 ERVARSIASNSQVSTKPTDMVTEPSSGIPAAEPSTMTRVPSSTPLIKSPVA-TTQQLPKV 1677
Query: 1650 ATDGKE-RVNLPKTNAETRKP-GRRLVRPRLKRPEES-QGDMETSEAEGSNITGKVAASH 1706
A+D KE R+ K + E R+P GRR+VRP+L +PEES + D++ EAEG+ GK A+H
Sbjct: 1678 ASDNKEKRLISQKPSTEFRRPSGRRIVRPQLVKPEESPKVDVDMPEAEGTGDEGKQPAAH 1737
Query: 1707 DAETQGNLALQS-QLSARKRPA-STTTELREESLSQGEPSSDVPAPVLKKSKLPDSSSED 1764
+ E+Q +++ Q RKR A S +E +++SL+QGE SS++ P KK+K +S +
Sbjct: 1738 EPESQVTTSVRPVQTLVRKRQADSLVSEPQQDSLTQGETSSEIAPPASKKAKGSESHPDT 1797
Query: 1765 AGGQSASPLEDTQPTTEESVEAVGDLAQGSNEEAVEAEKEEVDNTGEKAEEMKESHQVDT 1824
+ G++ + +P +E ++A D E+ E + +
Sbjct: 1798 SEGENLA----KEPAIDELMDATTT----------------TDGDNEETEAENAEEKTEE 1837
Query: 1825 TSEAELQNDKNDVLEENLDRPTGVEMACDDGSKDQAEQENQQLTLESESEREEGELLPDV 1884
EA+ N+ ++ +EE+ + ++ S+DQ E+ENQ+ + ES++EEGEL D
Sbjct: 1838 YVEAQQDNEADEPVEES--PTETETIPTEEESRDQTEEENQEPLTDMESDKEEGELDLDT 1895
Query: 1885 TE-VEGAADLSNVVGSPEIGELLPELVSTPVVSPGGNE---DEAPAS-EEPQE--AVNDE 1937
E +E D+++++ SPE E+ PE ++TP SP E +EA + E P E ++
Sbjct: 1896 LEDLEEGTDVASMMRSPEKEEVQPETLATPTQSPSRMETAMEEAETTIETPVEDDKTDEG 1955
Query: 1938 GDGTEENAEGLDKSNDGEEA---DQVPEGSVTTGETASTSSAIEPDISRQPSSSAT--TT 1992
GD EE A+ + +ND +EA D PE S T ST+ ++ +SS T
Sbjct: 1956 GDAAEEAADIPNNANDQQEAPETDIKPETSAATTSPVSTAPTTSSTLASAITSSGAPETE 2015
Query: 1993 EAKQASPPASNASHIVNLRERA----RERAMQRQAGAMPSTVIRGRGRPAGRGRGV 2044
+ K+A P +S IV L +RA RER P+ RG RGR V
Sbjct: 2016 DPKRAPSPGGGSSTIVTLADRAQMKRRERIANIVVSRAPNPATRG-----ARGRTV 2066
|
Component of the nuclear pore complex. Acts as a docking site for activities required for desumoylation and mRNA export. Required for the proper expression or localization of a subset of miRNAs. Arabidopsis thaliana (taxid: 3702) |
| >sp|P12270|TPR_HUMAN Nucleoprotein TPR OS=Homo sapiens GN=TPR PE=1 SV=3 | Back alignment and function description |
|---|
| >sp|O74424|NU211_SCHPO Nucleoporin nup211 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nup211 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q02455|MLP1_YEAST Protein MLP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MLP1 PE=1 SV=2 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2058 | ||||||
| 297736092 | 2088 | unnamed protein product [Vitis vinifera] | 0.985 | 0.971 | 0.647 | 0.0 | |
| 359494617 | 2087 | PREDICTED: nuclear-pore anchor-like [Vit | 0.984 | 0.970 | 0.646 | 0.0 | |
| 224101293 | 2052 | predicted protein [Populus trichocarpa] | 0.964 | 0.967 | 0.647 | 0.0 | |
| 255555570 | 2095 | Nucleoprotein TPR, putative [Ricinus com | 0.984 | 0.967 | 0.628 | 0.0 | |
| 356557066 | 2075 | PREDICTED: nuclear-pore anchor-like [Gly | 0.975 | 0.967 | 0.602 | 0.0 | |
| 356528625 | 2088 | PREDICTED: nuclear-pore anchor-like [Gly | 0.976 | 0.962 | 0.600 | 0.0 | |
| 449461152 | 2079 | PREDICTED: nuclear-pore anchor-like [Cuc | 0.971 | 0.962 | 0.571 | 0.0 | |
| 186496370 | 2093 | nucleoprotein TPR [Arabidopsis thaliana] | 0.978 | 0.962 | 0.554 | 0.0 | |
| 334184013 | 2115 | nucleoprotein TPR [Arabidopsis thaliana] | 0.978 | 0.952 | 0.549 | 0.0 | |
| 334184011 | 2094 | nucleoprotein TPR [Arabidopsis thaliana] | 0.978 | 0.961 | 0.552 | 0.0 |
| >gi|297736092|emb|CBI24130.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2442 bits (6329), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1340/2071 (64%), Positives = 1642/2071 (79%), Gaps = 43/2071 (2%)
Query: 1 MPLFVSDEEMSRLSNDAAAVAAKADAYIRYLQTDFETVKARADAAAITAEQTCSLLEQKF 60
MPLF+SDEE SR SND A VA KAD++IR L + +TVKA+ADAA+ITAEQTCSLLEQK+
Sbjct: 1 MPLFISDEEYSRCSNDVALVAEKADSFIRDLYNELQTVKAQADAASITAEQTCSLLEQKY 60
Query: 61 ISLQEEFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLHLQLIGKDGEIERLTMEVAELH 120
ISL +EFSK+ESQNAQL SL +R++ELA++Q++KHQLHL+ I KDGEIERL+ E +ELH
Sbjct: 61 ISLSQEFSKLESQNAQLNSSLQERLSELAQIQAEKHQLHLKSIEKDGEIERLSTEESELH 120
Query: 121 KSRRQLMELVEQKDLQHSEKGATIKAYLDKIINLTDNAAQREARLAETEAELARAQATCT 180
KS+RQL+E +E KDL+ SEK ATIK+YLDKI+N+TD AA REARL++ EAEL+R++A C
Sbjct: 121 KSKRQLLEFLEHKDLEISEKNATIKSYLDKIVNMTDTAALREARLSDAEAELSRSKAACA 180
Query: 181 RLTQGKELIERHNAWLNEELTSKVNSLVELRRTHADLEADMSAKLSDVERQFSECSSSLN 240
RL Q KELIERHN WLN+ELTSKV SL ELRRTH +LEADMS K SDVER+ +ECSSSL
Sbjct: 181 RLLQEKELIERHNVWLNDELTSKVKSLTELRRTHVELEADMSTKHSDVERRLNECSSSLK 240
Query: 241 WNKERVRELEIKLSSLQEEFCSSKDAAAANEERFSTELSTVNKLVELYKESSEEWSRKAG 300
WNKERV+ELE+KL+S+Q+E CSSKDAAAANE+R S E+ TVNKLVELYKESSEEWSRKAG
Sbjct: 241 WNKERVKELEMKLTSMQQELCSSKDAAAANEQRLSAEIMTVNKLVELYKESSEEWSRKAG 300
Query: 301 ELEGVIKALETQLAQVQNDCKEKLEKEVSAREQLEKEAMDLKEKLEKCEAEIESSRKTNE 360
ELEGVIKALET L QV+ND KE+LEKEV AR++LEKEA DLK KLEKCEAE+E+SR+ NE
Sbjct: 301 ELEGVIKALETHLIQVENDYKERLEKEVFARKELEKEAADLKGKLEKCEAEMETSRRANE 360
Query: 361 LNLLPLSSFST-ETWMESFDTNNISEDNRLLVPKIPAGVSGTALAASLLRDGWSLAKIYA 419
LNLLPLSS T TW++SF TN++ EDN +LVPKIPAGVSGTALAASLLRDGWSLAK+Y+
Sbjct: 361 LNLLPLSSLITGTTWLDSFQTNDMVEDNCMLVPKIPAGVSGTALAASLLRDGWSLAKMYS 420
Query: 420 KYQEAVDALRHEQLGRKESEAVLQRVLYELEEKAGIILDERAEYERMVDAYSAINQKLQN 479
KYQEAVDALRHEQLGRK SEA+L++VL+E+EEKA +ILDERAE+ERMV+ YSAINQKLQ
Sbjct: 421 KYQEAVDALRHEQLGRKHSEAMLEQVLHEIEEKAVVILDERAEHERMVEGYSAINQKLQQ 480
Query: 480 FISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLKECRDIQLRCGLSRIE 539
+SE+S+L+KTIQELKADLR + RDY +AQKEI DL+KQVTVLLKECRDIQLRCGL +
Sbjct: 481 SLSEQSNLDKTIQELKADLRQQGRDYAVAQKEIVDLEKQVTVLLKECRDIQLRCGLVGHD 540
Query: 540 FDDDAVAIADVELAPESDAEKIISEHLLTFKDINGLVEQNVQLRSLVRNLSDQIESREME 599
F D+ A E+ ES+++++ISE LLTF+DINGLVEQNVQLRSLVR+LSDQ+E ++ME
Sbjct: 541 FADNGTITAADEMNAESNSDEVISERLLTFRDINGLVEQNVQLRSLVRSLSDQLEDKDME 600
Query: 600 FKDKLELELKKHTDEAASKVAAVLDRAEEQGRMIESLHTSVAMYKRLYEEEHKLHSSHTQ 659
K+K ELELKKHTD+AASKVAAVL+RAEEQGRMIESLHTSVAMYKRLYEEEHKLHSS
Sbjct: 601 LKEKFELELKKHTDQAASKVAAVLERAEEQGRMIESLHTSVAMYKRLYEEEHKLHSSFPH 660
Query: 660 YIEAAP-DGRKDLLLLLEGSQEATKRAQEKMAERVRCLEDDLGKARSEIIALRSERDKLA 718
EAAP +GRKDL+LLLEGSQEATK+AQE+ AERVR L++DL K+RSEII+LRSERDK A
Sbjct: 661 SAEAAPENGRKDLMLLLEGSQEATKKAQEQAAERVRSLQEDLAKSRSEIISLRSERDKFA 720
Query: 719 LEAEFAREKLDSVMREAEHQKVEVNGVLARNVEFSQLVVDYQRKLRETSESLNAAQELSR 778
LEA FARE+L+S M+E EHQ+ E NG+LARNVEFSQL+V+YQRK+RE+SESL+ +ELSR
Sbjct: 721 LEANFARERLESFMKEFEHQRDEANGILARNVEFSQLIVNYQRKIRESSESLHTVEELSR 780
Query: 779 KLAMEVSVLKHEKEMLSNAEQRAYDEVRSLSQRVYRLQASLDTIQNAEEVREEARAAERR 838
KL MEVS LKHEKEMLSN+E+RA DEVRSLS+RV+RLQA+LDTI + EE REEAR ERR
Sbjct: 781 KLTMEVSFLKHEKEMLSNSEKRASDEVRSLSERVHRLQATLDTIHSTEEFREEARTVERR 840
Query: 839 KQEEYIKQVEREWAEAKKELQEERDNVRLLTSDREQTLKNAVKQVEEMGKELATALRAVA 898
KQEE+I+Q+EREWAEAKKELQEERDNVR LT DREQT+KNA++QVEEMGKELA AL+AVA
Sbjct: 841 KQEEHIRQIEREWAEAKKELQEERDNVRTLTLDREQTIKNAMRQVEEMGKELAKALQAVA 900
Query: 899 SAETRAAVAETKLSDMEKRIRPLDAKGDEVDDGSRPSDE------VQLQVGKEELEKLKE 952
+AE RAAVAE + SD+EK+++ + K E++ PS V L + KEE+EKLKE
Sbjct: 901 AAEARAAVAEARYSDLEKKLKSSETKVVEINGECGPSSSSAHEAVVDLHIEKEEIEKLKE 960
Query: 953 EAQANREHMLQYKSIAQVNEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELER 1012
EAQAN+ HMLQYKSIA+VNEAALK+ME HENFR + +KKSLE E+ SLR+RVSELE
Sbjct: 961 EAQANKAHMLQYKSIAEVNEAALKQMEYAHENFRIEADKLKKSLEAEVMSLRERVSELEN 1020
Query: 1013 ENILKSEEIASAAGVREDALASAREEITSLKEERSIKISQIVNLEVQVSALKEDLEKEHE 1072
E ILKS+E AS A E+ALASA EI SLKEE SIK+SQI +E+Q+SALK+DLE EH
Sbjct: 1021 EAILKSKEAASTAAGNEEALASALAEIGSLKEENSIKMSQIAAIEIQISALKDDLENEHR 1080
Query: 1073 RRQAAQANYERQVILQSETIQELTKTSQALASLQEQASELRKLADALKAENSELKSKWEL 1132
R ++AQ NYERQVILQSETIQELTKTSQALA LQ++ASELRKLADA AEN+ELK KWE+
Sbjct: 1081 RWRSAQDNYERQVILQSETIQELTKTSQALALLQKEASELRKLADAKNAENNELKGKWEV 1140
Query: 1133 EKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTEKDGSSVRISSQSTDSNPIGDA 1192
EKS+LE KNEAE+KYDE+NEQNKILHSRLEALHI+L EKD SV ISS S+ +P+GDA
Sbjct: 1141 EKSMLEVAKNEAEKKYDEINEQNKILHSRLEALHIKLAEKDRRSVGISS-SSGLDPLGDA 1199
Query: 1193 SLQSVISFLRNRKSIAETEVALLTTEKLRLQKQLESALKAAENAQASLTTERANSRAMLL 1252
LQ+VI++LR K IAETE++LL EKLRLQ QLESALKA E AQASL ERANSR +L
Sbjct: 1200 GLQNVINYLRRSKEIAETEISLLKQEKLRLQSQLESALKATETAQASLHAERANSRTLLF 1259
Query: 1253 TEEEIKSLKLQVRELNLLRESNVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRER 1312
TEEEIKSL+LQVRE+NLLRESN+Q+REENK+NFEECQKLREVAQK + + +NLE LLRE
Sbjct: 1260 TEEEIKSLQLQVREMNLLRESNMQIREENKHNFEECQKLREVAQKARIETENLEVLLRES 1319
Query: 1313 QIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAE 1372
Q E+E CKKE+E QR EK+ LEKRV ELL++ +NIDVEDY+R+K + QM+ L K+A+
Sbjct: 1320 QTEVETCKKEIEMQRTEKDQLEKRVGELLEQSKNIDVEDYERMKHDFHQMQINLREKDAQ 1379
Query: 1373 IEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQL 1432
IEE + +S K D IS+LEQ++ANSRLELSE+E +++DI QAEA K E+EKQK+++AQL
Sbjct: 1380 IEEMKRHVSEKQDRISKLEQDIANSRLELSERENKINDILQAEANMKAELEKQKKVTAQL 1439
Query: 1433 RRKCEMLSKEKEESIKENQSLARQLDDLKQGKKSTGDVTGEQVM---KEKEEKDTRIQIL 1489
+++ E LS+EKEE KENQ+L++QL+D KQGK+S GDV+GEQ M ++++EKD+R+Q L
Sbjct: 1440 KKRLEALSREKEELSKENQALSKQLEDYKQGKRSIGDVSGEQAMKEKEKEKEKDSRLQTL 1499
Query: 1490 ERTVERQREELKKEKDDNQKEKEKRLKGEKVMLDSAKLADQWKTRISSELEQHKQAVKRL 1549
E+ +ERQREE +KE+DD++ EK KRLK EK ++DS K +Q K ++ ELE+HK A+KR+
Sbjct: 1500 EKALERQREEYRKERDDHRMEKAKRLKTEKTIVDSIKNVNQEKAKLVDELEKHKLALKRV 1559
Query: 1550 SDELEKLKHTEAGLPEGTSVVQLLSGTNLDDHASSYFSAVESFERVARSVIVELGTCG-P 1608
SDELEKLKH + LPEGTSVVQLLSG LDD A++Y VE+FE++A SV ELG P
Sbjct: 1560 SDELEKLKHAKGNLPEGTSVVQLLSGPLLDDLAAAYALTVENFEKLAHSVFSELGARALP 1619
Query: 1609 SETSLALDAAAAAATTGSAVATLAPVTASSAGPGTIHLPVKATDGKE-RVNLPKTNAETR 1667
+ S +D +++AATTG P + P T + P KA + +E R+ + KTNAETR
Sbjct: 1620 LDPSSTVDTSSSAATTGLTAPAQPPSILTPVVPATSYSPAKAAEEREKRLAILKTNAETR 1679
Query: 1668 KPGRRLVRPRLKRPEESQGDMETSEAEGSNITGKVAASHDAETQGNLALQSQLSARKRPA 1727
K GR+LVRPRL + EE QGD++ +E EG N GK A S D ET Q+ RKR A
Sbjct: 1680 KTGRKLVRPRLVKSEEPQGDVDMAEIEGPNNGGKPAPSQDTET------QTLPPVRKRLA 1733
Query: 1728 -STTTELREESLSQGEPSSDVPAPVLKKSKLPDSSSEDAGGQSASPLED--TQPTTEESV 1784
S+T++L+E++ QGE +SDV PVLK+S+ DS E A GQ+A+ LE+ T EES
Sbjct: 1734 SSSTSDLQEDTQIQGETTSDVAPPVLKRSRGSDSPQEAAEGQAAASLENLETLRAIEESF 1793
Query: 1785 EAVGDLAQGSNEEAVEAEKEEVDNTGEKAEEMKESHQVDTTSEAELQNDKNDVLEENLDR 1844
+A+ DL QGSNEEA++ EKEE + + + EE KE QVD TSE EL N++ +EE L +
Sbjct: 1794 DAIADLPQGSNEEAIDVEKEEAEISEGQTEEPKEPAQVDGTSEVELPNERASAVEEVLVK 1853
Query: 1845 PTGVEMACDDGSKDQAEQENQQLTLESESEREEGELLPDVTEVEGAADLSNVVGSPEIGE 1904
P E+ DDG KDQAEQ+ Q +E SE+EEGEL PDVT++EG D+ N+ G IGE
Sbjct: 1854 PIEREVVFDDGPKDQAEQDIQPSMIELGSEKEEGELDPDVTDIEGGGDMCNITGGTTIGE 1913
Query: 1905 LLPELVSTPVVSPGGNEDEAPASE-------EPQEAVND----EGDGTEENAEGLDKSND 1953
PE V PV SP G ++E + E +ND EGD EE AEG DKSND
Sbjct: 1914 GQPETVVVPVTSPAGGDEEGLVTAAVDIGDINSPEILNDEKTAEGDVMEEVAEGSDKSND 1973
Query: 1954 GE-----EADQVPEGSVTT-GETASTSSAIEPDISRQ--PSSSATTTEAKQASPPASNAS 2005
G E DQ PE ++ + + STS+ ++ +S+Q P+ A E KQA P S+++
Sbjct: 1974 GNEQIAVETDQTPEAAMGSESTSTSTSTVVDVGVSKQGSPTVPADPEEVKQALPVGSSST 2033
Query: 2006 HIVNLRERARERAMQRQAGAMPSTVIRGRGR 2036
I NL+ERAR+RAM RQAG + +V RGRGR
Sbjct: 2034 TI-NLQERARQRAMLRQAGVLSPSVGRGRGR 2063
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494617|ref|XP_002265730.2| PREDICTED: nuclear-pore anchor-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224101293|ref|XP_002312219.1| predicted protein [Populus trichocarpa] gi|222852039|gb|EEE89586.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255555570|ref|XP_002518821.1| Nucleoprotein TPR, putative [Ricinus communis] gi|223541994|gb|EEF43539.1| Nucleoprotein TPR, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|356557066|ref|XP_003546839.1| PREDICTED: nuclear-pore anchor-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356528625|ref|XP_003532900.1| PREDICTED: nuclear-pore anchor-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449461152|ref|XP_004148306.1| PREDICTED: nuclear-pore anchor-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|186496370|ref|NP_178048.2| nucleoprotein TPR [Arabidopsis thaliana] gi|302425121|sp|A4GSN8.1|NUA_ARATH RecName: Full=Nuclear-pore anchor; AltName: Full=Protein TRANSLOCATED PROMOTER REGION; Short=AtTPR gi|126594444|gb|ABO21684.1| nuclear-pore anchor [Arabidopsis thaliana] gi|332198105|gb|AEE36226.1| nucleoprotein TPR [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|334184013|ref|NP_001185436.1| nucleoprotein TPR [Arabidopsis thaliana] gi|332198107|gb|AEE36228.1| nucleoprotein TPR [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|334184011|ref|NP_001185435.1| nucleoprotein TPR [Arabidopsis thaliana] gi|332198106|gb|AEE36227.1| nucleoprotein TPR [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2058 | ||||||
| UNIPROTKB|E1BYQ6 | 2368 | TPR "Uncharacterized protein" | 0.719 | 0.625 | 0.205 | 6e-67 | |
| POMBASE|SPCC162.08c | 1837 | nup211 "nucleoporin nup211" [S | 0.734 | 0.822 | 0.216 | 3.8e-66 | |
| UNIPROTKB|F1S300 | 2365 | TPR "Uncharacterized protein" | 0.715 | 0.622 | 0.203 | 1.5e-61 | |
| ZFIN|ZDB-GENE-030131-6410 | 2352 | tprb "translocated promoter re | 0.734 | 0.642 | 0.198 | 3.4e-60 | |
| UNIPROTKB|E1BF47 | 2360 | TPR "Uncharacterized protein" | 0.717 | 0.625 | 0.202 | 3.4e-60 | |
| UNIPROTKB|F1MA98 | 2360 | Tpr "Protein Tpr" [Rattus norv | 0.684 | 0.596 | 0.212 | 3.4e-59 | |
| SGD|S000001803 | 1875 | MLP1 "Myosin-like protein asso | 0.661 | 0.726 | 0.210 | 1e-55 | |
| UNIPROTKB|P12270 | 2363 | TPR "Nucleoprotein TPR" [Homo | 0.693 | 0.604 | 0.214 | 9.2e-48 | |
| UNIPROTKB|F6UV28 | 2127 | TPR "Uncharacterized protein" | 0.606 | 0.586 | 0.216 | 1.1e-46 | |
| UNIPROTKB|E2QSE6 | 2366 | TPR "Uncharacterized protein" | 0.613 | 0.533 | 0.216 | 2.5e-45 |
| UNIPROTKB|E1BYQ6 TPR "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 702 (252.2 bits), Expect = 6.0e-67, Sum P(2) = 6.0e-67
Identities = 324/1575 (20%), Positives = 659/1575 (41%)
Query: 32 QTDFETVKARADAAAITAEQTCSLLEQKFISLQEEFSKVESQNAQLQKSLDDRVNELAEV 91
Q++ + ++AR + + +EQ +E++ QE E+Q Q + +++E ++
Sbjct: 33 QSEIDGLRARHERFKVDSEQQYFEVEKRLAQSQERLVN-ETQQCQTLREELKKLHEQLKL 91
Query: 92 QSQKHQLHLQLIGKDGEIE-RLTMEVAELHKSRRQLMELVEQKDLQHSEKGATIKAYLDK 150
++K++ ++ I+ L+ E EL +R L+ E++ + +K +K
Sbjct: 92 LNEKNKELEAAQDRNAAIQSHLSREKEELEAEKRDLVRTSERRSQEVEHLNEDVKRLNEK 151
Query: 151 IINLTDNXXXXXXXXXXXXXXXXXXXXXCTRLTQGKELIERHNAWLNEELTSKVNSLVEL 210
+ RL Q KEL++ N WLN EL +K + L+
Sbjct: 152 LTEANTEKVKLQLKLDELQTSDVTVKYREKRLEQEKELLQSQNTWLNSELKAKTDELLHT 211
Query: 211 RRTHADLEADMSAKLSDVERQFSECSSSLNWNKERVRELEIKLSSLQEEFCSSKDAAAAN 270
R ++ L + + + S +N K+ L+ + L + +K+ A+
Sbjct: 212 AREKGSEILELKCNLENKKEEVSRMEEQINSLKQSNENLQKHVEDLLNKLKEAKEQQASM 271
Query: 271 EERFSTELSTVNKLVELYKESSEEWSRKAGELEGVIKALETQL---AQVQNDCKEKLEKE 327
EERF EL+ KL LYK ++++ K+ EL G ++ L L + +E L +
Sbjct: 272 EERFHNELNAHIKLSNLYKSAADDSEAKSNELTGAVEELHKLLKEAGEANKATQEHLAEV 331
Query: 328 VSAREQLEKEAMDLKEKLEKCEAEIESSRKTNELNLLPLSSFSTETWMESFDTNNISEDN 387
++ +EKE L+EK+ K E E+E++ N+L LS+ + + S +
Sbjct: 332 EESKAVMEKE---LREKISKLEKELENA---NDL----LSATKRKGAVLSEEELAAMSPT 381
Query: 388 RLLVPKI-PAGVSGTALAASLL--RDGWSLAKIYAK-YQEAVDALRHEQLGRKESEAVLQ 443
V K+ G+ T L + + +D L K+ K + +D + E + K Q
Sbjct: 382 AAAVAKVVKPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVQE-VEAKAPILKRQ 440
Query: 444 RVLYELEEKAGIILD---ERA--EYERMVDAYSAINQKLQNFISEKSSLEKTIQELKADL 498
R +E +KA L E+A E +R+ + N++ E LE +++L +
Sbjct: 441 REEFERSQKAVASLSAKLEQAMKEIQRLQEDADKANKQTSMLERENQRLEIQVKDLSQQI 500
Query: 499 R-----MRER--DYYLAQKEIS--DLQKQVTVLLKECRDIQLRCGLSRIEFDDDAVAIAD 549
R + E ++ + +E+S D+ V+ + + R + ++ + + +A
Sbjct: 501 RVLLMELEEARGNHVIRDEEVSSADISSSSEVISQHL--VSYR-NIEELQQQNQRLLVAL 557
Query: 550 VELAPESDAEKIISEHLLTFKDINGLVEQNVQLRSLVRNLSDQIESRXXXXXXXXXXXXX 609
EL + E E T I+ L Q+ QL + L ESR
Sbjct: 558 RELGEAREKE----EQETTSSKISEL--QS-QLDEALNELEKLRESRHHQLQLVESIVRQ 610
Query: 610 XHTDEA--ASKVAAVLDRAEEQGRMIESLH-TSVAMYKRLYEE-EHKLHSSHTQYIEAAP 665
A A++ + G + E + TS + + S ++ +E A
Sbjct: 611 RDMFRILLAQTTGAIIP-LQASGMLPEEISLTSTPKRSSIPQAMSTPAPVSMSESVETA- 668
Query: 666 DGRKDLLLLLEGSQEATKRAQEKMAERVRCLEDDLGKARSEIIALRSERDKLALEAEFAR 725
+ L+ QE + +++ AE + L + K + ++ LRS+ K++ + EFA
Sbjct: 669 ----EAKAALKQLQEVFENYKKEKAENDKLLNEQNEKLQEQVTELRSQNAKISTQLEFAS 724
Query: 726 EKLDSVMREAEHQKVEVNGVLARNVEFSQLVVDYQRKLRETSESLNAAQELSRKLAMEVS 785
++ + + E + E+ + R + S ++ + ++ L A E +
Sbjct: 725 KRYEMLQDNVEGYRREITSLHERTQKLSATTQKQEQIINTMTQDLRGANEKLAVAEVRAE 784
Query: 786 VLKHEKEMLSNAEQRAYDEVRSL--SQRVYRLQ-ASLDTIQNXXXXXXXXXXXXXXXXXX 842
LK EK++L ++ R + SL QR L +L TIQ
Sbjct: 785 NLKKEKDILKMSDVRLTQQRESLLVEQRGQNLLLTNLRTIQGILERSETETKQRLNNQ-- 842
Query: 843 YIKQVEREWAEAKKELQEERDNVRLLTSDREQTLKNAVKQVE-EMGKELATXXXXXXXXX 901
++++ERE ++ KK+L+ E + LT ++E + + +Q+E E + + T
Sbjct: 843 -VEKLEREISQLKKKLESEVEQRHALTKNQEVHILDLKRQLETETNRHINTKELLKNAQK 901
Query: 902 XXXXXXXXKLSDMEKRIRPLD---AKGDEVDDGSRPSDEV--QLQVGXXXXXXXXXXAQA 956
+L++ E ++ A G S D++ +L+ +
Sbjct: 902 EATVLKQ-QLNNTEAQLASQSSQRAPGKGQPGTSEDVDDLVSRLRQADEQVNDLRERLRT 960
Query: 957 NREHMLQYKSIAQVNEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELERENIL 1016
+ ++ QY+++ E +L + + V E R VE K + L K++ E E+E
Sbjct: 961 SSSNVEQYRAMVLSLEESLNKEKQVTEEVRATVEARLKESSEYQAQLEKKLMESEKEKQE 1020
Query: 1017 KSEEIASAAGVREDALASAREEITSLKEERSIKISQIVNLEVQVSALKEDLEKEHERRQA 1076
EE A E L+ ++ +++L+ E + + + D +++ +
Sbjct: 1021 LQEEKRKAVENMEQQLSELKKSLSTLQSEVQEALQRASTALSNEQQARRDCQEQAKMASE 1080
Query: 1077 AQANYERQVILQSETIQELTKTSQALASLQEQASELRKLADALKAENSELKSKWELEKSV 1136
AQ YER+++L + ++ L + +A +L + A ++ E K+ WE + +
Sbjct: 1081 AQNKYERELMLHAADVEALQAIKEQVAKNTAVKQQLEEAAQKAESALLECKASWEERERM 1140
Query: 1137 LEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTE--KDGSSVRISSQSTDSNPIGDASL 1194
++ + + +++ +QN++LH +LE+L ++ K+ ++ + + L
Sbjct: 1141 MKDEASTLASRCEDLEKQNRLLHEQLESLSDKMVTSMKEAMPAALNVSLNEEGKSQEQIL 1200
Query: 1195 QSVISFLRNRKSIAETEVALLTTEKLRLQKQLESALKAAENAQASLTTERANSRAMLLTE 1254
+ ++ F+R K IAET + E LR ++++E + + Q SL ER + T
Sbjct: 1201 E-ILRFIRREKEIAETRFEVAQVESLRFRQRVEHLERELQEVQDSLNAEREKVQVTAKTI 1259
Query: 1255 EEIKSLKLQVRELNLLRESNVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQI 1314
+ + L + +N+L E+N LREE + +E Q+++ +K ++D L+ E
Sbjct: 1260 AQHEELMKKTETMNVLIETNKMLREEKERLEQELQQMQAKVRKLEADILPLQESNAELSE 1319
Query: 1315 EIEACXXXXXXXXXXXXNLEKRVSELLQRCRNIDVEDYDRLKVE-------VRQMEEKLS 1367
+ + R LL + ++ D+E+Y +L E ++QM E+
Sbjct: 1320 KSGMLQAEKKLLEEDVKRWKTRTQHLLSQQKDTDLEEYRKLLSEKEANTKRIQQMSEETG 1379
Query: 1368 GKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQ-K 1426
AEI T L+T + + L+ E+A R E +K L D A+ K++ Q K
Sbjct: 1380 RLKAEIARTTASLTTSQNLLQNLKDEVAKIRTEKETLQKEL-DAKVADIQEKVKTITQVK 1438
Query: 1427 RISAQLRRKCEMLSKEKEESIKE--NQSLARQLDDLKQGKKSTGDVTGEQVMKEKEEKDT 1484
+I + + + E L + ++ + E QS Q ++ + S +V +++ + +
Sbjct: 1439 KIGRRYKTQYEELKAQHDKMVAEAATQSFVEQQEE----QVSVQEV--QELKDSLSQAEG 1492
Query: 1485 RIQILERTVERQRXXXXXXXXXXXXXXXXRLKGEKVMLDSAKLADQWKTRISSELEQHKQ 1544
+ + LE VE + R E++ ++LA +++ + + Q +Q
Sbjct: 1493 KTKTLENQVENLQKTVAEKETEA------RNLQEQISQLQSELA-RFRQDLQEKTTQEEQ 1545
Query: 1545 AVKRLSDELEKLKHT 1559
++++++ EK + T
Sbjct: 1546 LRQQITEKEEKTRKT 1560
|
|
| POMBASE|SPCC162.08c nup211 "nucleoporin nup211" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1S300 TPR "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-6410 tprb "translocated promoter region b (to activated MET oncogene)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BF47 TPR "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MA98 Tpr "Protein Tpr" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| SGD|S000001803 MLP1 "Myosin-like protein associated with the nuclear envelope" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P12270 TPR "Nucleoprotein TPR" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F6UV28 TPR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2QSE6 TPR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A4GSN8 | NUA_ARATH | No assigned EC number | 0.5548 | 0.9786 | 0.9622 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2058 | |||
| pfam07926 | 132 | pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein | 5e-19 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-17 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-14 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-12 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-12 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-12 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-12 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 7e-12 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-11 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-10 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-10 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-10 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-10 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-09 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-09 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-09 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 5e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 6e-09 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 6e-09 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 9e-09 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-08 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 1e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-08 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-08 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-08 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 4e-08 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 6e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 8e-08 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 1e-07 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-07 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 6e-07 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 7e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-06 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 3e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 8e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-05 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 2e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 6e-05 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 6e-05 | |
| COG1269 | 660 | COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su | 6e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 9e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-04 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 2e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-04 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 3e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 5e-04 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 5e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 6e-04 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 6e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 8e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 8e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.001 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.001 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.001 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 0.001 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 0.001 | |
| PRK12705 | 508 | PRK12705, PRK12705, hypothetical protein; Provisio | 0.001 | |
| pfam01496 | 707 | pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni | 0.001 | |
| TIGR04211 | 198 | TIGR04211, SH3_and_anchor, SH3 domain protein | 0.001 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.002 | |
| COG1269 | 660 | COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su | 0.002 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 0.002 | |
| PRK00252 | 865 | PRK00252, alaS, alanyl-tRNA synthetase; Reviewed | 0.002 | |
| COG5185 | 622 | COG5185, HEC1, Protein involved in chromosome segr | 0.002 | |
| pfam09726 | 680 | pfam09726, Macoilin, Transmembrane protein | 0.003 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.004 |
| >gnl|CDD|149160 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 5e-19
Identities = 46/132 (34%), Positives = 82/132 (62%)
Query: 1035 AREEITSLKEERSIKISQIVNLEVQVSALKEDLEKEHERRQAAQANYERQVILQSETIQE 1094
EE +SL+ E + + + E ++ L+EDLE++ E AQ YER+++ +E I+E
Sbjct: 1 LEEEKSSLQAELKRLLEKKEDAEEKIQKLQEDLEEQAEIANEAQQKYERELVKHAEDIEE 60
Query: 1095 LTKTSQALASLQEQASELRKLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQ 1154
L + L L+++ ++L+ A++ +AE SE + WE +K +LE +E E++ +E+NEQ
Sbjct: 61 LQALRKQLNELKKEIAQLKAEAESAQAELSEAEESWEEQKKMLEDELSELEKRIEELNEQ 120
Query: 1155 NKILHSRLEALH 1166
NK+LH ++E L
Sbjct: 121 NKLLHDQIELLS 132
|
The sequences featured in this family are similar to a region of human TPR protein and to yeast myosin-like proteins 1 (MLP1) and 2 (MLP2). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores. TPR is thought to be a component of nuclear pore complex- attached intra-nuclear filaments, and is implicated in nuclear protein import. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity. Length = 132 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family | Back alignment and domain information |
|---|
| >gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2058 | |||
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 100.0 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 100.0 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.91 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.91 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 99.89 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.69 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.67 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.54 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.46 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 99.46 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.39 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.38 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.37 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.35 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.35 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.32 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 99.3 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.11 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 99.08 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.07 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 99.06 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 99.04 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 98.85 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 98.82 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 98.56 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.48 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 98.45 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.39 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 98.34 | |
| PF13514 | 1111 | AAA_27: AAA domain | 98.33 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.31 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.28 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 98.2 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 98.06 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 98.05 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 98.04 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 98.03 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 97.9 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 97.8 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 97.76 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 97.73 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 97.68 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 97.63 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 97.57 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 97.57 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 97.54 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 97.5 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 97.47 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 97.45 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 97.44 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 97.24 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 97.24 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.24 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 97.24 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 97.18 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 97.18 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 97.18 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 97.16 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 97.12 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.02 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 97.0 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 96.96 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 96.9 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 96.88 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 96.82 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 96.73 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 96.67 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 96.62 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 96.59 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 96.55 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 96.52 | |
| PRK11637 | 428 | AmiB activator; Provisional | 96.51 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 96.49 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 96.44 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 96.35 | |
| PRK11637 | 428 | AmiB activator; Provisional | 96.24 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 96.09 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 96.01 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 96.0 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 95.95 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 95.93 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 95.88 | |
| PF13514 | 1111 | AAA_27: AAA domain | 95.87 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 95.76 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 95.75 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 95.74 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 95.6 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 95.56 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 95.5 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 95.49 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 95.47 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 95.44 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 95.43 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 95.43 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 95.32 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 95.32 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 95.15 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 95.0 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 94.99 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 94.9 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 94.89 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 94.86 | |
| PF06005 | 72 | DUF904: Protein of unknown function (DUF904); Inte | 94.84 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 94.65 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 94.24 | |
| PRK09039 | 343 | hypothetical protein; Validated | 94.24 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 94.2 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 93.95 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 93.94 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 93.94 | |
| PRK09039 | 343 | hypothetical protein; Validated | 93.87 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 93.87 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 93.81 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 93.78 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 93.58 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 93.52 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 93.47 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 93.47 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 93.45 | |
| KOG0979 | 1072 | consensus Structural maintenance of chromosome pro | 93.34 | |
| PF13870 | 177 | DUF4201: Domain of unknown function (DUF4201) | 93.33 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 93.22 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 93.16 | |
| KOG2129 | 552 | consensus Uncharacterized conserved protein H4 [Fu | 93.07 | |
| KOG4809 | 654 | consensus Rab6 GTPase-interacting protein involved | 92.79 | |
| PF03999 | 619 | MAP65_ASE1: Microtubule associated protein (MAP65/ | 92.77 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 92.77 | |
| PF15397 | 258 | DUF4618: Domain of unknown function (DUF4618) | 92.75 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 92.7 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 92.68 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 92.68 | |
| PRK10929 | 1109 | putative mechanosensitive channel protein; Provisi | 92.39 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 92.34 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 92.33 | |
| PF06818 | 202 | Fez1: Fez1; InterPro: IPR009638 This family repres | 92.28 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 92.22 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 92.11 | |
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 91.98 | |
| PF10186 | 302 | Atg14: UV radiation resistance protein and autopha | 91.96 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 91.96 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 91.9 | |
| PF06818 | 202 | Fez1: Fez1; InterPro: IPR009638 This family repres | 91.79 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 91.22 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 91.13 | |
| PRK15422 | 79 | septal ring assembly protein ZapB; Provisional | 91.05 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 90.69 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 90.47 | |
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 90.42 | |
| PF13870 | 177 | DUF4201: Domain of unknown function (DUF4201) | 90.28 | |
| PF04012 | 221 | PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T | 89.93 | |
| PF14197 | 69 | Cep57_CLD_2: Centrosome localisation domain of PPC | 89.84 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 89.82 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 89.64 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 89.37 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 89.13 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 89.0 | |
| COG3074 | 79 | Uncharacterized protein conserved in bacteria [Fun | 88.91 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 88.74 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 88.15 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 88.09 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 87.95 | |
| KOG0982 | 502 | consensus Centrosomal protein Nuf [Cell cycle cont | 87.76 | |
| KOG4603 | 201 | consensus TBP-1 interacting protein [Signal transd | 87.33 | |
| PF10481 | 307 | CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 | 86.78 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 86.58 | |
| PF06008 | 264 | Laminin_I: Laminin Domain I; InterPro: IPR009254 L | 86.24 | |
| PF11559 | 151 | ADIP: Afadin- and alpha -actinin-Binding; InterPro | 85.77 | |
| TIGR03017 | 444 | EpsF chain length determinant protein EpsF. Sequen | 85.65 | |
| PF10481 | 307 | CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 | 85.37 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 85.28 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 85.03 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 84.71 | |
| TIGR01010 | 362 | BexC_CtrB_KpsE polysaccharide export inner-membran | 84.57 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 84.48 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 84.39 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 84.1 | |
| PF15397 | 258 | DUF4618: Domain of unknown function (DUF4618) | 84.1 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 83.96 | |
| PF12795 | 240 | MscS_porin: Mechanosensitive ion channel porin dom | 83.9 | |
| KOG0982 | 502 | consensus Centrosomal protein Nuf [Cell cycle cont | 83.87 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 83.0 | |
| TIGR03017 | 444 | EpsF chain length determinant protein EpsF. Sequen | 82.69 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 82.67 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 82.53 | |
| COG3883 | 265 | Uncharacterized protein conserved in bacteria [Fun | 82.44 | |
| PF13166 | 712 | AAA_13: AAA domain | 82.32 | |
| PF11559 | 151 | ADIP: Afadin- and alpha -actinin-Binding; InterPro | 82.26 | |
| PRK10361 | 475 | DNA recombination protein RmuC; Provisional | 81.83 | |
| KOG2129 | 552 | consensus Uncharacterized conserved protein H4 [Fu | 81.73 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 81.61 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 81.38 | |
| PRK10884 | 206 | SH3 domain-containing protein; Provisional | 81.22 | |
| KOG1853 | 333 | consensus LIS1-interacting protein NUDE [Cytoskele | 81.08 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 80.93 | |
| KOG1853 | 333 | consensus LIS1-interacting protein NUDE [Cytoskele | 80.71 | |
| PF10498 | 359 | IFT57: Intra-flagellar transport protein 57 ; Inte | 80.49 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 80.45 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 80.45 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 80.12 |
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-167 Score=1639.92 Aligned_cols=1773 Identities=29% Similarity=0.365 Sum_probs=1499.4
Q ss_pred CCCCCChHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1 MPLFVSDEEMSRLSNDA-AAVAAKADAYIRYLQTDFETVKARADAAAITAEQTCSLLEQKFISLQEEFSKVESQNAQLQK 79 (2058)
Q Consensus 1 ~~~~~s~eEl~~~~~~~-~~i~~K~e~~i~~l~~el~t~KA~~e~~~i~aEQ~~~~lEqk~~sl~~e~~~le~e~~eL~~ 79 (2058)
|++|+....++.+..|+ -.|...+..||.....+|+.+|+++..+.+++||+|+.+++||..+...|+.+..+++.++.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~V~~d~~~~l~~k~~~~~~lk~e~~k~~v~~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~ 80 (1822)
T KOG4674|consen 1 MDILGVESFLDVLSEDISPLVDVDVFKKLPKKSKDFESLKDEDGKTEVNHEQQLSELEKKILRLEQRLSDLSRQAKLLRN 80 (1822)
T ss_pred CcchhHHHHhhcchhhcccccccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888877776666665 36788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045447 80 SLDDRVNELAEVQSQKHQLHLQLIGKDGEIERLTMEVAELHKSRRQLMELVEQKDLQHSEKGATIKAYLDKIINLTDNAA 159 (2058)
Q Consensus 80 ~l~~~~~Ela~~q~~~~~L~~~~~~~dseverLr~ei~eLe~ekr~ll~llErk~~e~eel~e~l~~l~eKi~eL~~~~~ 159 (2058)
.+.....++..+....+.+..........++.|+...++++.++|.|+.+++++.++++.+..+++.|++++..++..++
T Consensus 81 e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~ 160 (1822)
T KOG4674|consen 81 ELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLS 160 (1822)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHhhhhh
Q 045447 160 QREARLAETEAELARAQATCTRLTQGKELIERHNAWLNEELTSKVNSLVELRRTHADLEADMSAKLSDVERQFSECSSSL 239 (2058)
Q Consensus 160 ~~e~rl~e~es~~~s~k~~e~RLeQE~eLLqknneWLe~ELk~KteEll~~Rre~~~~e~~l~aki~eLqre~~E~~ssL 239 (2058)
+++.++++..+..++++|++.||+||++||+++|.||+.+|.++++.|+.+||+|+....++..++..+...+.++..++
T Consensus 161 e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~ 240 (1822)
T KOG4674|consen 161 ELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKN 240 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 045447 240 NWNKERVRELEIKLSSLQEEFCSSKDAAAANEERFSTELSTVNKLVELYKESSEEWSRKAGELEGVIKALETQLAQVQND 319 (2058)
Q Consensus 240 ~~sk~rv~eLe~Kl~~lqe~L~~~ke~~a~~ee~fr~EL~aq~RLaeLyke~aee~~~k~~ELe~~ikeLe~~L~q~e~~ 319 (2058)
.+.+.++.+|+.++.++..+|..+++++..++..|.+||.++++|++||++.+++|..++++|.++|.+++..|+.+...
T Consensus 241 ~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~ 320 (1822)
T KOG4674|consen 241 KSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASER 320 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCcccccccccccccCccccccccccCCCCCCCC
Q 045447 320 CKEKLEKEVSAREQLEKEAMDLKEKLEKCEAEIESSRKTNELNLLPLSSFSTETWMESFDTNNISEDNRLLVPKIPAGVS 399 (2058)
Q Consensus 320 ~~e~LEkE~~~~~~lEke~~eLkekl~~lE~Ele~~~~anel~~~~lsa~~~~~~~~~~~~s~~~e~~~~~~p~~~~g~s 399 (2058)
+.+.++.-.....-+.+....+..+|.+|+.+|+..+..+ ++ .++ . .| ++
T Consensus 321 ~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~-------~~--~~~-------~------~~--------~s 370 (1822)
T KOG4674|consen 321 NKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSL-------SA--TGE-------S------SM--------VS 370 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-------Hh--hcc-------c------ch--------hh
Confidence 8887777777777888888899999999999988653211 11 000 0 11 12
Q ss_pred c-hHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHH
Q 045447 400 G-TALAASLLRDGWSLAKIYAKYQEAVDALRHEQLGRKESEAVLQRVLYELEEKAGIILDERAEYERMVDAYSAINQKLQ 478 (2058)
Q Consensus 400 ~-tAaAss~~KsG~SLTqlYt~Yve~k~qL~~Er~en~rLq~~Ld~Iv~ELEeKAP~L~eqR~EyErl~~~~~~Ls~~Le 478 (2058)
+ +|++++++++||+||++|++|..++.+|...+.+.++++.+|.+|+.++..++|+|+++|.+|+||...+..|+.+|+
T Consensus 371 ~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~ 450 (1822)
T KOG4674|consen 371 EKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELD 450 (1822)
T ss_pred hHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 466889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcCCCCcccchhhhhhhcccCCCCCch
Q 045447 479 NFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLKECRDIQLRCGLSRIEFDDDAVAIADVELAPESDA 558 (2058)
Q Consensus 479 qa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~Ev~~~qlr~g~~g~~~~~d~~~is~~~~~d~SdT 558 (2058)
.++.++..+++.+..+..++.+.+|+|+.|.+++.||++|||+|+.||.+++.+++...+ +..+.+++|+
T Consensus 451 ~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~----------s~~~~~es~S 520 (1822)
T KOG4674|consen 451 FSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVS----------SDSTENESDS 520 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC----------ccccccCccH
Confidence 999999999999999999999999999999999999999999999999986544432211 1225688999
Q ss_pred hhhhhhccccccchHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 559 EKIISEHLLTFKDINGLVEQNVQLRSLVRNLSDQIESREMEFKDKLELELKKHTDEAASKVAAVLDRAEEQGRMIESLHT 638 (2058)
Q Consensus 559 ~~vISerLVtFkdI~ELQeQNqeLL~vvReLs~klE~eE~e~~e~le~Elk~~~dEa~~~l~~l~e~~eeQ~~miESl~k 638 (2058)
+.|||+|||+|+||.|||+||++||.+||+||+++|..+......+...++..+++|...|++|...+.++.++|++|++
T Consensus 521 ~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~ 600 (1822)
T KOG4674|consen 521 EEIISERLVEFSNINELQEKNVELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLT 600 (1822)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHhhhc-CCCccccccCCCCchhhhHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 639 SVAMYKRLYEEEHKLH-SSHTQYIEAAPDGRKDLLLLLEGSQEATKRAQEKMAERVRCLEDDLGKARSEIIALRSERDKL 717 (2058)
Q Consensus 639 eRDMyR~Ll~e~~~l~-ss~~~s~~~~~~g~~~~~~~lE~sq~~~~~a~~q~~e~~k~L~eql~k~r~El~~LrsE~~K~ 717 (2058)
+|||||.++......+ ..++.+....++........+.+.+...........++++.++++|+.++.++..++++..|+
T Consensus 601 erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~ 680 (1822)
T KOG4674|consen 601 ERDMYKELLAELEDSHQLKPNSSALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKL 680 (1822)
T ss_pred HHHHHHHhhhcccccccCCCCchhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999976665422111 111111111110000012334444444444445567889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 045447 718 ALEAEFAREKLDSVMREAEHQKVEVNGVLARNVEFSQLVVDYQRKLRETSESLNAAQELSRKLAMEVSVLKHEKEMLSNA 797 (2058)
Q Consensus 718 s~q~e~a~ER~e~Lq~n~e~~r~E~~sL~~rn~eLs~~~~k~e~~l~~~~e~L~aaeel~~~L~~E~~nLKaEK~Llk~~ 797 (2058)
..+..||.+||+||+.+++++|.++.+|.+||..|..++.+|+++++.++++|..|.+.++.+.+++.|||.|+.|++..
T Consensus 681 ~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t 760 (1822)
T KOG4674|consen 681 KNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKET 760 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHH
Q 045447 798 EQRAYDEVRSLSQRVYRLQASLDTIQNAEEVREEARAAERRKQEEYIKQVEREWAEAKKELQEERDNVRLLTSDREQTLK 877 (2058)
Q Consensus 798 E~RL~~EnesL~~e~~rLqs~L~tiQs~~e~REeses~~Rrrle~~Ie~LE~Els~lKkrL~eE~e~~r~L~~~re~~~~ 877 (2058)
+.||.++++.|..+..+|+.++.++|+..+.++++.+..|.+++.+|+.|+++|+.+|++|+++++.+|.++...+.++.
T Consensus 761 ~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~ 840 (1822)
T KOG4674|consen 761 EERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLE 840 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccccCCCCCCc----hhHhHHHhHHHHHHHHHH
Q 045447 878 NAVKQVEEMGKELATALRAVASAETRAAVAETKLSDMEKRIRPLDAKGDEVDDGSRPS----DEVQLQVGKEELEKLKEE 953 (2058)
Q Consensus 878 e~qkrid~l~~El~~~~eal~~aetr~~vle~rv~~Le~kL~~~~~k~~s~~~~~~~s----~E~eL~~lk~ELe~lkee 953 (2058)
|++.+|+++..++.+++..+..+.+..+.++.++.+|.++|+....++..++...... .+..|+....++..+++.
T Consensus 841 ~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~ 920 (1822)
T KOG4674|consen 841 NAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEE 920 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887765554321111 235577777888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHH
Q 045447 954 AQANREHMLQYKSIAQVNEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELERENILKSEEIASAAGVREDALA 1033 (2058)
Q Consensus 954 L~~Ak~qveQYK~IAqsaEeaL~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~El~~~~eE~~~~~~~~e~ql~ 1033 (2058)
|..|++||.+|+.++.++|.+|..++..|++|+.++++.+.....++..|+.+|.+|..++..+..++...+.+++.++.
T Consensus 921 L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~ 1000 (1822)
T KOG4674|consen 921 LTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLL 1000 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1034 SAREEITSLKEERSIKISQIVNLEVQVSALKEDLEKEHERRQAAQANYERQVILQSETIQELTKTSQALASLQEQASELR 1113 (2058)
Q Consensus 1034 ~l~~El~~Lk~E~~~~~~~~~~~E~q~~~l~~DL~~Q~~~a~eAQ~nYErElvLHAe~IqeL~k~~e~~~~lq~e~~elr 1113 (2058)
.+..+|+.++++...+...+..+...+..+++||..++++|+.||.+|+++||+|+++++.|.+++++++.++.++..|+
T Consensus 1001 ~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk 1080 (1822)
T KOG4674|consen 1001 DLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLK 1080 (1822)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCCCCchh
Q 045447 1114 KLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTEKDGSSVRISSQSTDSNPIGDAS 1193 (2058)
Q Consensus 1114 ~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia~~~~~~a~~ss~s~~~~s~~~e~ 1193 (2058)
..++.+...+.....+|.+++.+|++++..++.||.+|..||++||+||+.++.++++ +.+|.+ ..|.+|
T Consensus 1081 ~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~--------~n~S~~--~~g~sd 1150 (1822)
T KOG4674|consen 1081 KSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAV--------SNLSAM--LLGLSD 1150 (1822)
T ss_pred hhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------cccccc--ccchHH
Confidence 9999999999999999999999999999999999999999999999999999987654 122322 234688
Q ss_pred HHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHh
Q 045447 1194 LQSVISFLRNRKSIAETEVALLTTEKLRLQKQLESALKAAENAQASLTTERANSRAMLLTEEEIKSLKLQVRELNLLRES 1273 (2058)
Q Consensus 1194 L~eVI~yLRREKEIae~qlel~~qE~~RLqqQle~~qkqLdEar~~L~~Ere~s~t~~~s~e~hkeLmeKleqLNlLRES 1273 (2058)
|+.||+||||||||++++|++++.|+.||++++...++.+++++..|+.+|.+.+..+++..+|..+|.++++||+||||
T Consensus 1151 L~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~Es 1230 (1822)
T KOG4674|consen 1151 LQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRES 1230 (1822)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Q 045447 1274 NVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYD 1353 (2058)
Q Consensus 1274 N~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e 1353 (2058)
|++||+++.++..+|+.|+..+.+++.++.||+..+.++.+++..+..+++.|+++.+|||+|.|+|+++|.++||.+|+
T Consensus 1231 N~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~ 1310 (1822)
T KOG4674|consen 1231 NKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYE 1310 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHH-------HHHH
Q 045447 1354 RLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEM-------EKQK 1426 (2058)
Q Consensus 1354 ~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~-------e~~~ 1426 (2058)
+|+.+|..|+++|..+...++.++..+...+..+++.-+.+..+...+..-..++.++....++.-.+. .+.+
T Consensus 1311 kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~ 1390 (1822)
T KOG4674|consen 1311 KLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDKK 1390 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888777777777777655556666544444333222 2222
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcchhHHHHhhh-----hhhhHHHHHHHHHHHHH
Q 045447 1427 RISAQLR----RKCEMLSKEKEESIKENQSLARQLDDLKQGKKSTGDVTGEQVMKEKE-----EKDTRIQILERTVERQR 1497 (2058)
Q Consensus 1427 ~~~~~~k----~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~~~~~~~~~~q~~ke~~-----~~~~~~~~~~~~~e~~~ 1497 (2058)
....+.+ ++++... ++.++..++++|.+++++.-+-..++.+ ..+++.++.+ ++..+++.+.+..-.+.
T Consensus 1391 ~~~~~~~e~t~rk~e~~~-~k~~~~~e~~sl~eeL~e~~q~~~~~~s-~~e~i~~e~~~~~k~~~~~~~e~~~~~i~~~~ 1468 (1822)
T KOG4674|consen 1391 KAHELMQEDTSRKLEKLK-EKLELSEELESLKEELEELQQLQATLQS-ETEAITKELFEAKKEEEKSTTERLLEEIKKLL 1468 (1822)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHhHHHHhhh-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2222222 2333332 2333668899999999885332222222 4444444332 23358899999888888
Q ss_pred HHHHHhhhhhH-------HHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCc
Q 045447 1498 EELKKEKDDNQ-------KEKEKRLKGEKVMLDSAKLADQWKTRIS---SELEQHKQAVKRLSDELEKLKHTEAGLPEGT 1567 (2058)
Q Consensus 1498 ~~~~~e~~~~~-------~~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~e~~~~~~~~l~~el~~~~~~~~~~~~~~ 1567 (2058)
+.++++..+.+ .++....+....++...+++.+++.+|+ ...+++...|.++..+|++.+++. +|+++
T Consensus 1469 e~~~~~~~~~~~~~~~le~~k~e~~~e~e~~~~~~~~~~~E~lk~r~Rl~~eeq~~~~I~rl~~eLe~~~~~~--l~E~~ 1546 (1822)
T KOG4674|consen 1469 ETVRKKTVDADSKSENLEGTKKELESEKEELKQRLTELAAENLKLRSRLAKEEQYQKEISRLKEELESTKEAK--LEENT 1546 (1822)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH--HHhcc
Confidence 88888877754 4566667777788888899999999997 556699999999999999999977 99999
Q ss_pred ceeeccCccchhhhhhHHHHHHHHHHHhhhhhhhhcCCC---CCCCccchhhhhhhhhccCcccccCCCccccCCCCCCc
Q 045447 1568 SVVQLLSGTNLDDHASSYFSAVESFERVARSVIVELGTC---GPSETSLALDAAAAAATTGSAVATLAPVTASSAGPGTI 1644 (2058)
Q Consensus 1568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1644 (2058)
..++..+|..+-+ |++...+.-..+... .|++++.+..+++..++ .+..|-..+.|++..+.
T Consensus 1547 ~~~e~s~~~~~~~-----------~~~~~~~~~e~~~e~lk~~~~~~~~s~~~~~~~~~----~~~~~s~~~~~~~~~t~ 1611 (1822)
T KOG4674|consen 1547 ESSETSRMLDLQN-----------QEEDLSAIKEKLTEELKNLPSVSTASERPAAKQAI----ATSSSSENSSSQAAITQ 1611 (1822)
T ss_pred chhcccccchhhH-----------HHHHHhhccCCcHHHhccCCCcCchhhchhhhhcc----cccCcccccchhhhhhh
Confidence 9999999999888 333332211111111 22221011222222211 11223233455555566
Q ss_pred CCCccccCccc-cccCCCCcccccCCCCcccccccCCCCCCCCCcccccccCCCcCCCCCCCcchhhcccccc---cccc
Q 045447 1645 HLPVKATDGKE-RVNLPKTNAETRKPGRRLVRPRLKRPEESQGDMETSEAEGSNITGKVAASHDAETQGNLAL---QSQL 1720 (2058)
Q Consensus 1645 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 1720 (2058)
..+++..+.++ +.+-.+|+.+. | |..+..||..+|-+..+.+++.+. .++-|+. ..+.
T Consensus 1612 ~~~~~~~~~~~~~~~~~~e~~~~---~-------------~~V~~~~~~~e~q~~~~~~~~q~r--~~~~l~~~~k~~~~ 1673 (1822)
T KOG4674|consen 1612 QVNEVSKSNDAIRQTTLKESQLA---A-------------PNVAKSHPELESQGDESIQPLQQR--SKLFLSELEKSLES 1673 (1822)
T ss_pred hccccccchHHHHHhhhhhhhhh---h-------------hhhccccHHHHhhhccccCchhhc--ccchhhhHHHHHHH
Confidence 66666666666 55555666655 1 788888889998888788888776 3333443 3445
Q ss_pred ccccccC-CCchhhhhccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCC-CCCcchhhhhhhcCCCCCCchhh
Q 045447 1721 SARKRPA-STTTELREESLSQGEPSSDVPAPVLKKSKLPDSSSEDAGGQSASPLED-TQPTTEESVEAVGDLAQGSNEEA 1798 (2058)
Q Consensus 1721 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 1798 (2058)
..+++++ ++++.|+-+++..|..+||+.||.-....|+.|.+.++++ .+- .-|-..+.+.......+|.+..
T Consensus 1674 l~~~~~~~s~~~~p~ss~~~~~t~~s~~~~~~ep~~~~s~S~~~~~~~-----~~~~~~~~~~~vt~~~~~~k~~~~~~- 1747 (1822)
T KOG4674|consen 1674 LVKPLVASSKVSEPSSSSAPLETVASDIDPPQEPDASISASQQLASVT-----SELKLEPSGKSVTTNGSTSKQGIEQG- 1747 (1822)
T ss_pred HhhhhccCCccCCcccCcchhcccccccCcccCCccccccccCCchhh-----hcccCCCCccccccCCcccccccccc-
Confidence 6778888 6677888999999999999999944444444444444332 111 3333222233312234444444
Q ss_pred hhhhhhhhhcccccchhhccccCCCCc----cccccccCcchhhhhccCCCCCcc-cccCCCCcchhhhhhhhccccccc
Q 045447 1799 VEAEKEEVDNTGEKAEEMKESHQVDTT----SEAELQNDKNDVLEENLDRPTGVE-MACDDGSKDQAEQENQQLTLESES 1873 (2058)
Q Consensus 1799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 1873 (2058)
+..++...|..+ +.+|-++ ++..|+ +.|.+++ |+- .+++|+++..++..-+|++
T Consensus 1748 -----~~~e~d~~k~kE---~~p~~~~e~~e~~~~~~-----------~~~~~~~~~~t-~~s~d~~~~~dd~~~~~s~- 1806 (1822)
T KOG4674|consen 1748 -----TDVENDTKKKKE---SGPMEAQEESEKQATID-----------NSPEDVEQLPT-IESRDQTENRDDSFVIDSD- 1806 (1822)
T ss_pred -----cccccccccccc---cCccchhhhhhhhcccc-----------cCcchhhhccc-cchhhhhhcccchhccCcc-
Confidence 333333333322 2233332 223333 4566666 555 7889999998888889998
Q ss_pred cccccccCCCcccc
Q 045447 1874 EREEGELLPDVTEV 1887 (2058)
Q Consensus 1874 ~~~~~~~~~~~~~~ 1887 (2058)
+.|+|+.|.|-+++
T Consensus 1807 deee~~~d~d~de~ 1820 (1822)
T KOG4674|consen 1807 DEEEYENDLDDDED 1820 (1822)
T ss_pred chhhhhhccccCCC
Confidence 88999997765443
|
|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation | Back alignment and domain information |
|---|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF13870 DUF4201: Domain of unknown function (DUF4201) | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] | Back alignment and domain information |
|---|
| >KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >PF15397 DUF4618: Domain of unknown function (DUF4618) | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >PRK10929 putative mechanosensitive channel protein; Provisional | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
| >PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
| >PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >PRK15422 septal ring assembly protein ZapB; Provisional | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
| >PF13870 DUF4201: Domain of unknown function (DUF4201) | Back alignment and domain information |
|---|
| >PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription | Back alignment and domain information |
|---|
| >PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 | Back alignment and domain information |
|---|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >COG3074 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] | Back alignment and domain information |
|---|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
| >PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells | Back alignment and domain information |
|---|
| >PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch | Back alignment and domain information |
|---|
| >TIGR03017 EpsF chain length determinant protein EpsF | Back alignment and domain information |
|---|
| >PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >PF15397 DUF4618: Domain of unknown function (DUF4618) | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >PF12795 MscS_porin: Mechanosensitive ion channel porin domain | Back alignment and domain information |
|---|
| >KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >TIGR03017 EpsF chain length determinant protein EpsF | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG3883 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PF13166 AAA_13: AAA domain | Back alignment and domain information |
|---|
| >PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch | Back alignment and domain information |
|---|
| >PRK10361 DNA recombination protein RmuC; Provisional | Back alignment and domain information |
|---|
| >KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >PRK10884 SH3 domain-containing protein; Provisional | Back alignment and domain information |
|---|
| >KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-22
Identities = 115/704 (16%), Positives = 213/704 (30%), Gaps = 192/704 (27%)
Query: 959 EHMLQYKSIAQVNEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELERENILKS 1018
EH QYK I V E + F + + K V ++ + +IL
Sbjct: 13 EHQYQYKDILSVFE----------DAF-------VDNFD------CKDVQDMPK-SILSK 48
Query: 1019 EEIASAAGVREDALASAREEITSLKEERSIKISQIVN--LEVQVSALKEDLEKEHERRQA 1076
EEI + DA++ +L ++ + + V L + L ++ E +
Sbjct: 49 EEIDHIIMSK-DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 1077 AQANYERQVILQSETIQELTKTSQALASLQEQASELRKLADALKAENSELKSKWELEKSV 1136
Y Q Q K + S + +LR+ AL EL+
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYN---VSRLQPYLKLRQ---ALL----ELRP-------- 149
Query: 1137 LEKLKNEAEEKYDEVNEQNKILH-------SRLEALHIQLTEKDGSSVRISSQSTDSNPI 1189
+N ++ + +
Sbjct: 150 ----------------AKNVLIDGVLGSGKTWVAL----------DVCL----------- 172
Query: 1190 GDASLQSVISF------LRNRKSIAETEVALLTTEKLRLQKQLESALKAAENAQASLTTE 1243
+Q + F L+N S ET + +L ++ S + N + + +
Sbjct: 173 -SYKVQCKMDFKIFWLNLKNCNS-PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 1244 RANSRAMLLTEEEIKSLKLQVRELNLLRESNVQLREE-NKYNFEECQKLREVAQKTKSDC 1302
+A R +L ++ L L +L NVQ + N +N C+ L + + K
Sbjct: 231 QAELRRLLKSKPYENCL-L------VLL--NVQNAKAWNAFNL-SCKIL--LTTRFKQVT 278
Query: 1303 DNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQM 1362
D L I ++ + E LL + + +D L EV
Sbjct: 279 DFLSA-ATTTHISLDHHSMTLT----PDEVK-----SLLLKYLDCRPQD---LPREVLTT 325
Query: 1363 E--------EKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQA 1414
E + A + +++ KL TI +E L LE +E K +S
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI--IESSLNV--LEPAEYRKMFDRLSV- 380
Query: 1415 EAARKLEMEKQKRISAQLRRK--CEMLSKEKEESIKE--NQSLARQLDDLKQGKKSTGDV 1470
I L +++ + + + SL + K+ S +
Sbjct: 381 -------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK--QPKESTISIPSI 431
Query: 1471 TGEQVMKEKEEKDTRIQILER---TVERQREELKKEKDDN-----------QKEKEKRLK 1516
E +K + E I++ ++L D E +R+
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 1517 G-EKVMLD----SAKL---ADQWKTRIS-----SELEQHKQAV-------KRLSDELEK- 1555
V LD K+ + W S +L+ +K + +RL + +
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 1556 LKHTEAGLPEG--TSVVQLLSGTNLDDHASSYFSAVESFERVAR 1597
L E L T ++++ L + F E+ ++V R
Sbjct: 552 LPKIEENLICSKYTDLLRI----ALMAEDEAIFE--EAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2058 | |||
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 98.46 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 98.44 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 97.93 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 97.72 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 97.18 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 97.03 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 96.7 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 94.7 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 94.48 | |
| 2jee_A | 81 | YIIU; FTSZ, septum, coiled-coil, cell division, ce | 94.29 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 92.91 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 92.79 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 92.25 | |
| 2fxo_A | 129 | Myosin heavy chain, cardiac muscle beta isoform; c | 91.72 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 90.44 | |
| 2fxo_A | 129 | Myosin heavy chain, cardiac muscle beta isoform; c | 90.17 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 90.16 | |
| 2v66_B | 111 | Nuclear distribution protein NUDE-like 1; structur | 89.89 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 89.6 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 89.16 | |
| 3u1c_A | 101 | Tropomyosin alpha-1 chain; anti-parallel coiled co | 85.11 | |
| 3hnw_A | 138 | Uncharacterized protein; coiled-coil, structural g | 84.12 | |
| 3s84_A | 273 | Apolipoprotein A-IV; four helix bundle, transport | 81.32 | |
| 2ocy_A | 154 | RAB guanine nucleotide exchange factor SEC2; RAB, | 80.85 | |
| 3hnw_A | 138 | Uncharacterized protein; coiled-coil, structural g | 80.27 |
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
Probab=98.46 E-value=0.0031 Score=71.13 Aligned_cols=15 Identities=40% Similarity=0.457 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 045447 29 RYLQTDFETVKARAD 43 (2058)
Q Consensus 29 ~~l~~el~t~KA~~e 43 (2058)
..+..+++.+....+
T Consensus 9 ~~l~~~~~~~~~~~~ 23 (284)
T 1c1g_A 9 QMLKLDKENALDRAD 23 (284)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHH
Confidence 334455554444443
|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
| >2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
| >3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A | Back alignment and structure |
|---|
| >3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} | Back alignment and structure |
|---|
| >3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00