Citrus Sinensis ID: 045450

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MASPTAAASGSSSSREGTAKAMVFDQISQTIQSTSNLLHLMQQSSPSQVQLTKLPKNLLAKTTMIKNTGQVCIRADASGYFLPRCTCGEWITKCSSSQNCFPAACKYGELPT
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHccccHHHHHHHHcccccccEEEEEcccccccccccccccHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHccccEEEEEEccccccccccccccEEEEEccccccccHHcHcccccc
Coil and Loop (DISEMBL)
masptaaasgssssregtaKAMVFDQISQTIQSTSNLLHlmqqsspsqvqltklpknlLAKTTMIKNTGQVciradasgyflprctcgewitkcsssqncfpaackygelpt
Flexible Loop (DISEMBL)
masptaaasgssssregTAKAMVFDQISQTIQSTSNLLHLMQQSSPSQVQLTKLPKNLLAKTTMIKNTGQVCIRADASGYFLPRCTCGEWITKCSSSQNCFPAACKYGELPT
Low Complexity Region (SEG)
MasptaaasgssssREGTAKAMVFDQISQTIQSTSNLLHLMQQSSPSQVQLTKLPKNLLAKTTMIKNTGQVCIRADASGYFLPRCTCGEWITKCSSSQNCFPAACKYGELPT
Disordered region (IsUnstruct)
*****************************************************LPKNLLAKTTMIKNTGQVCIRADASGYFLPRCTCGEWITKCSSSQNCFPAACKY*****
Disordered Region (DISOPRED)
************************DQISQTIQSTSNLLHLMQ*********TKLPKNLLAKTTMIKNTGQVCIRADASGYFLPRCTCGEWITKCSSSQNCFPAACKYGELP*
Disordered Region (DISEMBL)
*****************TAKAMVFDQISQTIQSTSNLLHLMQQSSPSQVQLTKLPKNLLAKTTMIKNTGQVCIRADASGYFLPRCTCGEWITKCSSSQNCFPAACKYGELPT
Disordered Region (DISPRO)
*******************KAM**DQISQTIQSTSNLLHLMQQSSPSQVQLTKLPKNLLAKTTMIKNTGQVCIRADASGYFLPRCTCGEWITKCSSSQNCFPAACKYGELPT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASPTAAASGSSSSREGTAKAMVFDQISQTIQSTSNLLHLMQQSSPSQVQLTKLPKNLLAKTTMIKNTGQVCIRADASGYFLPRCTCGEWITKCSSSQNCFPAACKYGELPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
225427326	173	PREDICTED: uncharacterized protein LOC10	0.598	0.387	0.716	6e-19
224138856	137	predicted protein [Populus trichocarpa]	0.517	0.423	0.793	5e-18
449461535	131	PREDICTED: uncharacterized protein LOC10	0.830	0.709	0.518	9e-18
388505188	129	unknown [Medicago truncatula]	0.651	0.565	0.552	9e-15
357451873	150	Tobamovirus multiplication 2B [Medicago	0.598	0.446	0.611	1e-14
297742165	112	unnamed protein product [Vitis vinifera]	0.428	0.428	0.833	2e-14
294460135	115	unknown [Picea sitchensis]	0.491	0.478	0.767	1e-13
30692687	122	tobamovirus multiplication 2B protein [A	0.562	0.516	0.617	6e-13
79319059	123	tobamovirus multiplication 2B protein [A	0.562	0.512	0.617	6e-13
18398400	131	tobamovirus multiplication 2B protein [A	0.562	0.480	0.617	6e-13

>gi|225427326|ref|XP_002279231.1| PREDICTED: uncharacterized protein LOC100257452 [Vitis vinifera]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 57/67 (85%)

Query: 6  AAASGSSSSREGTAKAMVFDQISQTIQSTSNLLHLMQQSSPSQVQLTKLPKNLLAKTTMI 65
          +A++G  S+RE T KA + DQISQ++QSTSNLLHLMQQSSPS  QLTKLPKNLLAKT+ I
Sbjct: 15 SASAGRGSARESTVKATMADQISQSVQSTSNLLHLMQQSSPSHAQLTKLPKNLLAKTSTI 74

Query: 66 KNTGQVC 72
          KNTGQ+ 
Sbjct: 75 KNTGQLL 81

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138856|ref|XP_002326707.1| predicted protein [Populus trichocarpa] gi|222834029|gb|EEE72506.1| predicted protein [Populus trichocarpa]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/58 (79%), Positives = 51/58 (87%)

Query: 15 REGTAKAMVFDQISQTIQSTSNLLHLMQQSSPSQVQLTKLPKNLLAKTTMIKNTGQVC 72
          REGTAK++V DQISQ +QSTSNLLHLMQQSSPSQ +L KLPKNLLAK + IKNTGQV 
Sbjct: 18 REGTAKSVVADQISQAVQSTSNLLHLMQQSSPSQAKLMKLPKNLLAKASTIKNTGQVL 75

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461535|ref|XP_004148497.1| PREDICTED: uncharacterized protein LOC101202794 [Cucumis sativus]

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/106 (51%), Positives = 71/106 (66%), Gaps = 13/106 (12%)

Query: 5   TAAASGSSSSREGTAKAMVFDQISQTIQSTSNLLHLMQQSSPSQVQLTKLPKNLLAKTTM 64
           TA+ SG S+ R+GTAKAMV D ISQ+++STSNLLHLMQQSS +Q QLTKLPKNLLAK + 
Sbjct: 3   TASPSGRSN-RDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLTKLPKNLLAKAST 61

Query: 65  IKNTGQVC-----IRADASGYF------LPRC-TCGEWITKCSSSQ 98
           +KNTG++      + +    Y       +PR  T  + +T   SSQ
Sbjct: 62  MKNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQ 107

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505188|gb|AFK40660.1| unknown [Medicago truncatula]

 Score = 84.0 bits (206), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 58/85 (68%), Gaps = 12/85 (14%)

Query: 1  MASPTAAASGSSSSREGTAKAMVFDQISQTIQSTSNLLHLMQQSSPSQVQLTKLPKNLLA 60
          M++  AA  G +S     AKA+V +QISQT+QSTSNLLHLMQ SSP+Q +L KLPKNLLA
Sbjct: 1  MSTQNAATGGDNS-----AKAVVAEQISQTVQSTSNLLHLMQHSSPAQAKLVKLPKNLLA 55

Query: 61 KTTMIKNTGQVCIRADASGYFLPRC 85
          K + +KNT QV  +       LPR 
Sbjct: 56 KVSTVKNTQQVLEQ-------LPRV 73

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451873|ref|XP_003596213.1| Tobamovirus multiplication 2B [Medicago truncatula] gi|355485261|gb|AES66464.1| Tobamovirus multiplication 2B [Medicago truncatula]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 5/72 (6%)

Query: 1  MASPTAAASGSSSSREGTAKAMVFDQISQTIQSTSNLLHLMQQSSPSQVQLTKLPKNLLA 60
          M++  AA  G +S     AKA+V +QISQT+QSTSNLLHLMQ SSP+Q +L KLPKNLLA
Sbjct: 22 MSTQNAATGGDNS-----AKAVVAEQISQTVQSTSNLLHLMQHSSPAQAKLVKLPKNLLA 76

Query: 61 KTTMIKNTGQVC 72
          K + +KNT QV 
Sbjct: 77 KVSTVKNTQQVL 88

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742165|emb|CBI33952.3| unnamed protein product [Vitis vinifera]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/48 (83%), Positives = 44/48 (91%)

Query: 25 DQISQTIQSTSNLLHLMQQSSPSQVQLTKLPKNLLAKTTMIKNTGQVC 72
          DQISQ++QSTSNLLHLMQQSSPS  QLTKLPKNLLAKT+ IKNTGQ+ 
Sbjct: 3  DQISQSVQSTSNLLHLMQQSSPSHAQLTKLPKNLLAKTSTIKNTGQLL 50

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294460135|gb|ADE75650.1| unknown [Picea sitchensis]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/56 (76%), Positives = 45/56 (80%), Gaps = 1/56 (1%)

Query: 16 EGTAKAMVFDQISQTIQSTSNLLHLMQQSSPSQVQLTKLPKNLLAKTTMIKNTGQV 71
          EGT K MV D ISQ + STSNLLHLMQQSSP+Q  L KLPKNLLAKTT IKNT QV
Sbjct: 7  EGTTKGMVADHISQAVLSTSNLLHLMQQSSPTQ-GLVKLPKNLLAKTTNIKNTEQV 61

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30692687|ref|NP_849740.1| tobamovirus multiplication 2B protein [Arabidopsis thaliana] gi|32698522|dbj|BAC24020.2| tobamovirus multiplication 2B [Arabidopsis thaliana] gi|88011095|gb|ABD38902.1| At1g32370 [Arabidopsis thaliana] gi|332193349|gb|AEE31470.1| tobamovirus multiplication 2B protein [Arabidopsis thaliana]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 51/68 (75%), Gaps = 5/68 (7%)

Query: 8  ASGSSSSR-----EGTAKAMVFDQISQTIQSTSNLLHLMQQSSPSQVQLTKLPKNLLAKT 62
          A+ S +SR     + TAKA+V DQISQ + ST+NLLHLM+QSS SQ QL KLPKNLLAK 
Sbjct: 2  ATASENSRGISGGDRTAKAVVADQISQAVNSTANLLHLMRQSSSSQAQLAKLPKNLLAKA 61

Query: 63 TMIKNTGQ 70
          ++ K TGQ
Sbjct: 62 SLTKATGQ 69

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79319059|ref|NP_001031126.1| tobamovirus multiplication 2B protein [Arabidopsis thaliana] gi|51969042|dbj|BAD43213.1| hypothetical protein [Arabidopsis thaliana] gi|332193352|gb|AEE31473.1| tobamovirus multiplication 2B protein [Arabidopsis thaliana]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 51/68 (75%), Gaps = 5/68 (7%)

Query: 8  ASGSSSSR-----EGTAKAMVFDQISQTIQSTSNLLHLMQQSSPSQVQLTKLPKNLLAKT 62
          A+ S +SR     + TAKA+V DQISQ + ST+NLLHLM+QSS SQ QL KLPKNLLAK 
Sbjct: 2  ATASENSRGISGGDRTAKAVVADQISQAVNSTANLLHLMRQSSSSQAQLAKLPKNLLAKA 61

Query: 63 TMIKNTGQ 70
          ++ K TGQ
Sbjct: 62 SLTKATGQ 69

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398400|ref|NP_564397.1| tobamovirus multiplication 2B protein [Arabidopsis thaliana] gi|21594393|gb|AAM66003.1| unknown [Arabidopsis thaliana] gi|332193350|gb|AEE31471.1| tobamovirus multiplication 2B protein [Arabidopsis thaliana]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 51/68 (75%), Gaps = 5/68 (7%)

Query: 8  ASGSSSSR-----EGTAKAMVFDQISQTIQSTSNLLHLMQQSSPSQVQLTKLPKNLLAKT 62
          A+ S +SR     + TAKA+V DQISQ + ST+NLLHLM+QSS SQ QL KLPKNLLAK 
Sbjct: 2  ATASENSRGISGGDRTAKAVVADQISQAVNSTANLLHLMRQSSSSQAQLAKLPKNLLAKA 61

Query: 63 TMIKNTGQ 70
          ++ K TGQ
Sbjct: 62 SLTKATGQ 69

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2033781	131	TOM2B "AT1G32370" [Arabidopsis	0.473	0.404	0.716	1.8e-14

TAIR|locus:2033781 TOM2B "AT1G32370" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 38/53 (71%), Positives = 44/53 (83%)

Query:    18 TAKAMVFDQISQTIQSTSNLLHLMQQSSPSQVQLTKLPKNLLAKTTMIKNTGQ 70
             TAKA+V DQISQ + ST+NLLHLM+QSS SQ QL KLPKNLLAK ++ K TGQ
Sbjct:    17 TAKAVVADQISQAVNSTANLLHLMRQSSSSQAQLAKLPKNLLAKASLTKATGQ 69


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.127   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      112        99   0.00091  102 3  11 22  0.37    30
                                                     29  0.46    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  119 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.85u 0.12s 10.97t   Elapsed:  00:00:00
  Total cpu time:  10.85u 0.12s 10.97t   Elapsed:  00:00:00
  Start:  Mon May 20 23:00:40 2013   End:  Mon May 20 23:00:40 2013

GO:0003674 "molecular_function" evidence=ND

GO:0046786 "viral replication complex formation and maintenance" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00