Citrus Sinensis ID: 045809

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55

MRNFASTFVHFSSAKISCFHQCFLGLFLSSIRFLVLKVNPLWIQLSYFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFISMFGLHARSKFYSLNQLFENRINPNLTPSSSSSSSSSSSENSTEFTDQIELGIVSHSYITNEEPNNGLENEHRMSSNDDNLKYNSVRVLVYVVLGYILVTHVVGSSLVALYTSLAPSAKQILKQKGLQIFTFSVFTTASTFSNCGFVPTNENMMVFKKNALLLLILFPQGLLGNTLYPSCLRFVIWVLKKITNREEFDYILRNSKEMIYRHLLSKAYSYFLAITVFGFIFVQLVLFCALEWDSEATDGLNFFEKLVASLFQVVNSRHTGESVFDISIISPAILVLFVVMMYLPPYTSFWPSRNREGDSRNFKEKKNKKKTFVQNFIFSQLSYLVIFIILVCITERDKMKKDPLNFNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMFFGRIKKFNMKGGKAWQIS

ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcccccccccccEEEccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccEEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHcccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccEEEcccccHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccc

cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEEEHcccEEEEEccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccEEEEEEEHHHHHHcccccccccccHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHHHHHHHHcccEEEEcccccccHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHEEEEEEEEEccccccEcccccccccccccccccccccccccccccHcHEEEEEEEEEccccccccccccEEEEc

MRNFASTFVhfssakiscfhQCFLGLFLSSIRFLVLKVNPLWIQLSYFISISSVGYLILRvskprdssfinpkniDVFFTSVsamtgssmSTVEMEVFSNFQLIIMTILMFVGGEVFISMFglharskfySLNQLFenrinpnltpsssssssssssensteftdqIELGIVshsyitneepnnglenehrmssnddnlkynsVRVLVYVVLGYILVTHVVGSSLVALYTSLAPSAKQILKQKGLQIFTFSVFttastfsncgfvptnenmMVFKKNALLLLILFpqgllgntlypsCLRFVIWVLKKITNREEFDYILRNSKEMIYRHLLSKAYSYFLAITVFGFIFVQLVLFCALEWDSEATDGLNFFEKLVASLFQVVNsrhtgesvfdisiiSPAILVLFVVMMylppytsfwpsrnregdsrnfkekknkkKTFVQNFIFSQLSYLVIFIILVCITerdkmkkdplnfnVLNVTIEVISAYgnvgfstgysckrqlrpdssckdawygfvgrwsnqGKVILILVMFFGRIKKfnmkggkawqis

MRNFASTFVHFSSAKISCFHQCFLGLFLSSIRFLVLKVNPLWIQLSYFISISSVGYLILRVSKprdssfinpkNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFISMFGLHARSKFYSLNQLFENRINPnltpsssssssssssensteftDQIELGIVSHSYITNEEPNNGLENEHRMSSNDDNLKYNSVRVLVYVVLGYILVTHVVGSSLVALYTSLAPSAKQILKQKGLQIFTFSVFTTASTFSNCGFVPTNENMMVFKKNALLLLILFPQGLLGNTLYPSCLRFVIWVLKKITNREEFDYILRNSKEMIYRHLLSKAYSYFLAITVFGFIFVQLVLFCALEWDSEATDGLNFFEKLVASLFQVVNSRHTGESVFDISIISPAILVLFVVMMYLPPYtsfwpsrnregdsrnfkekknkkktfvqnfifsqlsyLVIFIILVCITERDKMKKDPLNFNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFvgrwsnqgKVILILVMFFGRIKKFnmkggkawqis

MRNFASTFVHFSSAKISCFHQCFLGLFLSSIRFLVLKVNPLWIQLSYFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFISMFGLHARSKFYSLNQLFENRINPNLTPsssssssssssENSTEFTDQIELGIVSHSYITNEEPNNGLENEHRMSSNDDNLKynsvrvlvyvvlgyilvTHVVGSSLVALYTSLAPSAKQILKQKGLQIftfsvfttastfsNCGFVPTNENMMVFKKNAllllilfpqgllGNTLYPSCLRFVIWVLKKITNREEFDYILRNSKEMIYRHLLSKAYSYFLAITVFGFIFVQLVLFCALEWDSEATDGLNFFEKLVASLFQVVNSRHTGESVFDISIISPAILVLFVVMMYLPPYTSFWPSRNREGDSRNFkekknkkkTFVQNFIFSQLSYLVIFIILVCITERDKMKKDPLNFNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMFFGRIKKFNMKGGKAWQIS

****ASTFVHFSSAKISCFHQCFLGLFLSSIRFLVLKVNPLWIQLSYFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFISMFGLHARSKFYSLNQLFENR***************************IELGIVSHSYI*********************LKYNSVRVLVYVVLGYILVTHVVGSSLVALYTSLAPSAKQILKQKGLQIFTFSVFTTASTFSNCGFVPTNENMMVFKKNALLLLILFPQGLLGNTLYPSCLRFVIWVLKKITNREEFDYILRNSKEMIYRHLLSKAYSYFLAITVFGFIFVQLVLFCALEWDSEATDGLNFFEKLVASLFQVVNSRHTGESVFDISIISPAILVLFVVMMYLPPYTSFWP*******************TFVQNFIFSQLSYLVIFIILVCITERDKMKKDPLNFNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMFFGRIKKFNMKGG******

*****STFVHFSSAKISCFHQCFLGLFLSSIRFLVLKVNPLWIQLSYFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFISMFGLHARSKFYSLNQLFE**************************TDQIELGIVSHSYITNE*******************KYNSVRVLVYVVLGYILVTHVVGSSLVALYTSLAPSAKQILKQKGLQIFTFSVFTTASTFSNCGFVPTNENMMVFKKNALLLLILFPQGLLGNTLYPSCLRFVIWVLKKITNREEFDYILRNSKEMIYRHLLSKAYSYFLAITVFGFIFVQLVLFCALEWDSEATDGLNFFEKLVASLFQVVNSRHTGESVFDISIISPAILVLFVVMMYLPPYTSFWPSRNREGDSRNFKEKKNKKKTFVQNFIFSQLSYLVIFIILVCITERDKMKKDPLNFNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMFFGRIKKFNMKGGKAWQIS

********VHFSSAKISCFHQCFLGLFLSSIRFLVLKVNPLWIQLSYFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFISMFGLHARSKFYSLNQLFENRINPN********************TDQIELGIVSHSYITNEEPNNGLENEHRMSSNDDNLKYNSVRVLVYVVLGYILVTHVVGSSLVALYTSLAPSAKQILKQKGLQIFTFSVFTTASTFSNCGFVPTNENMMVFKKNALLLLILFPQGLLGNTLYPSCLRFVIWVLKKITNREEFDYILRNSKEMIYRHLLSKAYSYFLAITVFGFIFVQLVLFCALEWDSEATDGLNFFEKLVASLFQVVNSRHTGESVFDISIISPAILVLFVVMMYLPPYTSFWPSRNREGDSRNFKEKKNKKKTFVQNFIFSQLSYLVIFIILVCITERDKMKKDPLNFNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMFFGRIKKFNM*********

MRNFASTFVHFSSAKISCFHQCFLGLFLSSIRFLVLKVNPLWIQLSYFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFISMFGLHARSK******************************************IVSHSYITNEEPNNGLENEHRMSSNDDNLKYNSVRVLVYVVLGYILVTHVVGSSLVALYTSLAPSAKQILKQKGLQIFTFSVFTTASTFSNCGFVPTNENMMVFKKNALLLLILFPQGLLGNTLYPSCLRFVIWVLKKITNREEFDYILRNSKEMIYRHLLSKAYSYFLAITVFGFIFVQLVLFCALEWDSEATDGLNFFEKLVASLFQVVNSRHTGESVFDISIISPAILVLFVVMMYLPPYTSFWPSRNREGDSRNFKEKKNKKKTFVQNFIFSQLSYLVIFIILVCITERDKMKKDPLNFNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMFFGRIKKFNMKGGKAWQIS

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		549	2.2.26 [Sep-21-2011]
Q6H501		530	Probable cation transport	yes	no	0.938	0.971	0.489	1e-130
Q84TI7		506	Sodium transporter HKT1 O	yes	no	0.825	0.895	0.496	1e-127
Q7XPF8		552	Cation transporter HKT4 O	no	no	0.928	0.923	0.410	1e-112
Q0D9S3		530	Cation transporter HKT1 O	no	no	0.945	0.979	0.406	1e-110
A2YGP9		530	Cation transporter HKT1 O	N/A	no	0.945	0.979	0.406	1e-110
Q93XI5		530	Cation transporter HKT2 O	N/A	no	0.897	0.930	0.434	1e-110
Q7XPF7		500	Probable cation transport	no	no	0.894	0.982	0.476	1e-110
A2WNZ9		554	Cation transporter HKT8 O	N/A	no	0.928	0.920	0.429	1e-110
Q0JNB6		554	Cation transporter HKT8 O	no	no	0.923	0.915	0.419	1e-107
Q8L4K5		509	Probable cation transport	no	no	0.856	0.923	0.375	1e-88

>sp\|Q6H501\|HKT6_ORYSJ Probable cation transporter HKT6 OS=Oryza sativa subsp. japonica GN=HKT6 PE=2 SV=1	Back alignment and function desciption

 Score =  466 bits (1198), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 266/543 (48%), Positives = 367/543 (67%), Gaps = 28/543 (5%)

Query: 7   TFVHFSSAKISCFHQCFLGLFLSSIRFLVLKVNPLWIQLSYFISISSVGYLILRVSKPRD 66
           TF  F+++K S F +        S +F + + NPL++ ++YF  IS  GY  L+V KPRD
Sbjct: 14  TFRTFAASKFSSFTKSAQKSIKYSFQF-IYQNNPLFVHVAYFALISFAGYGSLKVLKPRD 72

Query: 67  SSFINPKNIDVFFTSVSAMTGSSMSTVEMEVFSNFQLIIMTILMFVGGEVFISMFGLH-A 125
            S    K++DV FTSVSA T SSM+TVEME FS+ QL ++TILM +GGEVF SM G+H  
Sbjct: 73  KSN-TLKDLDVLFTSVSASTVSSMATVEMEDFSSAQLWVLTILMLIGGEVFTSMLGIHFM 131

Query: 126 RSKFYSLNQLFENRINPNLTPSSSSSSSSSSSENSTEFTDQIELGIVSHSYITNEEPNNG 185
           R++F +   +     +P +   S +S+    S   T+ T       VS S          
Sbjct: 132 RAEFGTKESVSTRDHSPCIDIESITSTKFGPSTQGTKVT-------VSFS---------- 174

Query: 186 LENEHRMSSNDDNLKYNSVRVLVYVVLGYILVTHVVGSSLVALYTSLAPSAKQILKQKGL 245
              E RM  N  +++  +++ L +VV+GY+L+T++ GS L+ LY +L PSA +ILK+KG+
Sbjct: 175 ---ELRME-NGGHVEPKTIKFLGFVVMGYLLITNLGGSLLIYLYLNLVPSAHKILKRKGI 230

Query: 246 QIFTFSVFTTASTFSNCGFVPTNENMMVFKKNALLLLILFPQGLLGNTLYPSCLRFVIWV 305
            I  FSVFT  S+  NCGF P NENM++F+KN++LLL++ PQ L GNTL+  CLR ++W 
Sbjct: 231 GIIVFSVFTAISSVGNCGFTPVNENMIIFQKNSILLLLILPQILAGNTLFAPCLRLMVWS 290

Query: 306 LKKITNREEFDYILRNSKEMIYRHLLSKAYSYFLAITVFGFIFVQLVLFCALEWDSEATD 365
           L+KIT +++  YIL   K + Y+HL+S   S +L +TV   I +Q VLF +LEW S A D
Sbjct: 291 LEKITGKKDCRYILEYPKAIGYKHLMSTRESVYLTLTVVSLIILQTVLFLSLEWSSVALD 350

Query: 366 GLNFFEKLVASLFQVVNSRHTGESVFDISIISPAILVLFVVMMYLPPYTSFWPSRNREGD 425
           G++ ++K+V++LFQ VN+RH GESV D+S +S AILVL+ +MMYLP YTSF P  + E D
Sbjct: 351 GMSNYQKIVSALFQSVNARHAGESVTDLSNLSSAILVLYTIMMYLPGYTSFLPRHDGE-D 409

Query: 426 SRNFKEKKNKKKTFVQNFIFSQLSYLVIFIILVCITERDKMKKDPLNFNVLNVTIEVISA 485
           S+   EK NK+K  ++N+IFS +SYL IF++L+CITERD M  DPLNFNV ++  EV+ A
Sbjct: 410 SKT--EKINKRKGLLENWIFSHMSYLAIFVMLICITERDSMATDPLNFNVFSILFEVV-A 466

Query: 486 YGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMFFGRIKKFNMKGGKA 545
           YGNVGFS GYSCKR L  D+ CKDA YGF G+WS+ GK ILI+VM FGR+K FNMKGG+A
Sbjct: 467 YGNVGFSVGYSCKRLLNHDARCKDASYGFAGKWSDNGKAILIIVMLFGRLKTFNMKGGRA 526

Query: 546 WQI 548
           W++
Sbjct: 527 WKL 529

Probable cation transporter. May be involved in regulation of K(+)/Na(+) homeostasis.
Oryza sativa subsp. japonica (taxid: 39947)

>sp\|Q84TI7\|HKT1_ARATH Sodium transporter HKT1 OS=Arabidopsis thaliana GN=HKT1 PE=1 SV=1	Back alignment and function description

>sp\|Q7XPF8\|HKT4_ORYSJ Cation transporter HKT4 OS=Oryza sativa subsp. japonica GN=HKT4 PE=1 SV=2	Back alignment and function description

>sp\|Q0D9S3\|HKT1_ORYSJ Cation transporter HKT1 OS=Oryza sativa subsp. japonica GN=HKT1 PE=1 SV=1	Back alignment and function description

>sp\|A2YGP9\|HKT1_ORYSI Cation transporter HKT1 OS=Oryza sativa subsp. indica GN=HKT1 PE=1 SV=2	Back alignment and function description

>sp\|Q93XI5\|HKT2_ORYSI Cation transporter HKT2 OS=Oryza sativa subsp. indica GN=HKT2 PE=1 SV=1	Back alignment and function description

>sp\|Q7XPF7\|HKT7_ORYSJ Probable cation transporter HKT7 OS=Oryza sativa subsp. japonica GN=HKT7 PE=2 SV=2	Back alignment and function description

>sp\|A2WNZ9\|HKT8_ORYSI Cation transporter HKT8 OS=Oryza sativa subsp. indica GN=HKT8 PE=2 SV=2	Back alignment and function description

>sp\|Q0JNB6\|HKT8_ORYSJ Cation transporter HKT8 OS=Oryza sativa subsp. japonica GN=HKT8 PE=3 SV=1	Back alignment and function description

>sp\|Q8L4K5\|HKT9_ORYSJ Probable cation transporter HKT9 OS=Oryza sativa subsp. japonica GN=HKT9 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		549
224144234		506	sodium transporter hkt1-like protein [Po	0.908	0.986	0.617	1e-168
225446310		544	PREDICTED: sodium transporter HKT1 [Viti	0.958	0.966	0.591	1e-167
9719299		550	potassium-sodium symporter HKT1 [Eucalyp	0.948	0.947	0.536	1e-164
359484991		551	PREDICTED: sodium transporter HKT1-like	0.956	0.952	0.542	1e-161
225446305		590	PREDICTED: probable cation transporter H	0.923	0.859	0.558	1e-159
29424041		543	high affinity potassium transporter 2 [M	0.916	0.926	0.541	1e-158
296090325		501	unnamed protein product [Vitis vinifera]	0.881	0.966	0.561	1e-158
225446300		545	PREDICTED: sodium transporter HKT1-like	0.947	0.954	0.535	1e-158
147817820		641	hypothetical protein VITISV_025919 [Viti	0.956	0.819	0.534	1e-157
5834275		549	potassium-sodium symporter HKT2 [Eucalyp	0.954	0.954	0.537	1e-155

>gi\|224144234\|ref\|XP_002325229.1\| sodium transporter hkt1-like protein [Populus trichocarpa] gi\|222866663\|gb\|EEF03794.1\| sodium transporter hkt1-like protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 323/523 (61%), Positives = 401/523 (76%), Gaps = 24/523 (4%)

Query: 29  SSIRFLVLKVNPLWIQLSYFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGS 88
           S +R LV +++P W+QL+YF+ +S VG++ L+VSKPR  S + P ++D+FFTSVS+ T S
Sbjct: 6   SFLRVLVFQIHPFWVQLAYFVILSLVGHMALKVSKPRPGS-LRPASLDIFFTSVSSATVS 64

Query: 89  SMSTVEMEVFSNFQLIIMTILMFVGGEVFISMFGLHARSKFYSLNQLFENRINPNLTPSS 148
           SMSTVEMEVFSN QLIIMTILM +GGEVF S+ GL+     +S ++  E+R+        
Sbjct: 65  SMSTVEMEVFSNTQLIIMTILMLLGGEVFTSILGLYLSRFKFSKHETKESRV-------- 116

Query: 149 SSSSSSSSSENSTEFTDQIELGIVSHSYITNEEPNN-GLENEHRMSSNDDNLKYNSVRVL 207
                SS   N  + T+   L I        E+P N  LE       ND +LK NS++ L
Sbjct: 117 -----SSVYHNPPKRTNFPGLEI--------EKPTNVDLECNLNSLDNDHSLKLNSLKSL 163

Query: 208 VYVVLGYILVTHVVGSSLVALYTSLAPSAKQILKQKGLQIFTFSVFTTASTFSNCGFVPT 267
             V LGY  V H+ GSSLVA+YTSL PSA+Q+L  KG++I TFSVFTT STFSNCGFVPT
Sbjct: 164 ACVALGYFSVVHITGSSLVAMYTSLVPSARQVLGSKGIKIQTFSVFTTVSTFSNCGFVPT 223

Query: 268 NENMMVFKKNALLLLILFPQGLLGNTLYPSCLRFVIWVLKKITNREEFDYILRNSKEMIY 327
           NENM+ FKKN+ LLLIL PQ LLGNTLYPSCLRF+IW+L+KIT + EF YIL N++EM Y
Sbjct: 224 NENMVAFKKNSGLLLILIPQILLGNTLYPSCLRFLIWILEKITRKVEFRYILMNTREMGY 283

Query: 328 RHLLSKAYSYFLAITVFGFIFVQLVLFCALEWDSEATDGLNFFEKLVASLFQVVNSRHTG 387
            HLLS ++S  LAITV GFI VQ +LFC++EW+S A DGLN ++KL+ +LFQVVNSRHTG
Sbjct: 284 GHLLSFSHSCLLAITVSGFILVQFILFCSMEWNSGAKDGLNPYQKLMGALFQVVNSRHTG 343

Query: 388 ESVFDISIISPAILVLFVVMMYLPPYTSFWPSRNREG-DSRNFKEKKNKKKTFVQNFIFS 446
           ES+ D+SIISPAILVLFVVMMYLPPYTSF P + +E  DS   ++ KN++K+ VQ  +FS
Sbjct: 344 ESIVDLSIISPAILVLFVVMMYLPPYTSFMPKKQQEEVDSETGQKCKNQRKSLVQCLLFS 403

Query: 447 QLSYLVIFIILVCITERDKMKKDPLNFNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSS 506
            LS L IF+IL+C++ER+K+KKDPLNFNVLN+TIEV+SAYGNVGFSTGYSCKRQL PDSS
Sbjct: 404 PLSTLAIFVILICVSEREKLKKDPLNFNVLNITIEVVSAYGNVGFSTGYSCKRQLEPDSS 463

Query: 507 CKDAWYGFVGRWSNQGKVILILVMFFGRIKKFNMKGGKAWQIS 549
           CKDAW+GFVGRWSN GK ILILVMFFGR+KKF++ GGKAW++S
Sbjct: 464 CKDAWFGFVGRWSNMGKFILILVMFFGRLKKFSINGGKAWKLS 506

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225446310\|ref\|XP_002270986.1\| PREDICTED: sodium transporter HKT1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|9719299\|gb\|AAF97728.1\|AF176035_1 potassium-sodium symporter HKT1 [Eucalyptus camaldulensis]	Back alignment and taxonomy information

>gi\|359484991\|ref\|XP_002270183.2\| PREDICTED: sodium transporter HKT1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225446305\|ref\|XP_002267717.1\| PREDICTED: probable cation transporter HKT6-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|29424041\|gb\|AAO73474.1\| high affinity potassium transporter 2 [Mesembryanthemum crystallinum]	Back alignment and taxonomy information

>gi\|296090325\|emb\|CBI40144.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225446300\|ref\|XP_002270300.1\| PREDICTED: sodium transporter HKT1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147817820\|emb\|CAN68938.1\| hypothetical protein VITISV_025919 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|5834275\|gb\|AAD53890.1\|AF176036_1 potassium-sodium symporter HKT2 [Eucalyptus camaldulensis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		549
TAIR\|locus:2122749		506	HKT1 "high-affinity K+ transpo	0.599	0.650	0.5	6.3e-110
ASPGD\|ASPL0000054337		671	trkC [Emericella nidulans (tax	0.309	0.253	0.262	6e-26
SGD\|S000003665		1235	TRK1 "Component of the Trk1p-T	0.347	0.154	0.253	7.6e-20
ASPGD\|ASPL0000033664		673	trkA [Emericella nidulans (tax	0.502	0.410	0.255	7.5e-19
ASPGD\|ASPL0000011729		829	trkB [Emericella nidulans (tax	0.422	0.279	0.256	6.3e-18
UNIPROTKB\|G4MU45		642	MGG_07233 "Uncharacterized pro	0.275	0.235	0.248	2.9e-16
SGD\|S000001758		889	TRK2 "Component of the Trk1p-T	0.346	0.213	0.226	5.5e-16
DICTYBASE\|DDB_G0292412		648	DDB_G0292412 "cation transport	0.555	0.470	0.211	3.2e-15
POMBASE\|SPAC3F10.02c		841	trk1 "potassium ion transporte	0.488	0.318	0.257	1.1e-14
POMBASE\|SPAC1639.02c		880	trk2 "potassium ion transporte	0.347	0.217	0.241	1.7e-12

TAIR\|locus:2122749 HKT1 "high-affinity K+ transporter 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 869 (311.0 bits), Expect = 6.3e-110, Sum P(2) = 6.3e-110
 Identities = 166/332 (50%), Positives = 221/332 (66%)

Query:   218 THVVGSSLVALYTSLAPSAKQILKQKGLQIXXXXXXXXXXXXXNCGFVPTNENMMVFKKN 277
             T++VGS L+ +Y +   +A+ +L  K +               NCGFVPTNENM++F+KN
Sbjct:   168 TNLVGSVLLLVYVNFVKTARDVLSSKEISPLTFSVFTTVSTFANCGFVPTNENMIIFRKN 227

Query:   278 AXXXXXXXXXXXXGNTLYPSCLRFVIWVLKKITNREEFDYILRNSKEMIYRHLLSKAYSY 337
             +            GNTL+P  L  +IW L KIT R+E+ YIL+N  +M Y HLLS     
Sbjct:   228 SGLIWLLIPQVLMGNTLFPCFLVLLIWGLYKITKRDEYGYILKNHNKMGYSHLLSVRLCV 287

Query:   338 FLAITVFGFIFVQLVLFCALEWDSEATDGLNFFEKLVASLFQVVNSRHTGESVFDISIIS 397
              L +TV GF+ +QL+ FCA EW SE+ +G++ +EKLV SLFQVVNSRHTGE++ D+S +S
Sbjct:   288 LLGVTVLGFLIIQLLFFCAFEWTSESLEGMSSYEKLVGSLFQVVNSRHTGETIVDLSTLS 347

Query:   398 PAILVLFVVMMYLPPYTSFWPSRNREGDSRNFXXXXXXXXTFVQN--FIFSQLSYLVIFI 455
             PAILVLF++MMYLPPYT F P   ++   +            V+    I SQLS+L I I
Sbjct:   348 PAILVLFILMMYLPPYTLFMPLTEQKTIEKEGGDDDSENGKKVKKSGLIVSQLSFLTICI 407

Query:   456 ILVCITERDKMKKDPLNFNVLNVTIEVISAYGNVGFSTGYSCKRQLR-PDSSCKDAWYGF 514
              L+ ITER  +++DP+NFNVLN+T+EVISAYGNVGF+TGYSC+R++   D  CKDA YGF
Sbjct:   408 FLISITERQNLQRDPINFNVLNITLEVISAYGNVGFTTGYSCERRVDISDGGCKDASYGF 467

Query:   515 VGRWSNQGKVILILVMFFGRIKKFNMKGGKAW 546
              GRWS  GK +LI+VMF+GR K+F  K G+AW
Sbjct:   468 AGRWSPMGKFVLIIVMFYGRFKQFTAKSGRAW 499

GO:0008324 "cation transmembrane transporter activity" evidence=IEA

GO:0015079 "potassium ion transmembrane transporter activity" evidence=IEA

GO:0015081 "sodium ion transmembrane transporter activity" evidence=ISS;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS;IDA

GO:0006814 "sodium ion transport" evidence=IMP;IDA

GO:0009651 "response to salt stress" evidence=IGI;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0006813 "potassium ion transport" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IEP

ASPGD\|ASPL0000054337 trkC [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

SGD\|S000003665 TRK1 "Component of the Trk1p-Trk2p potassium transport system" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000033664 trkA [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000011729 trkB [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|G4MU45 MGG_07233 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

SGD\|S000001758 TRK2 "Component of the Trk1p-Trk2p potassium transport system" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0292412 DDB_G0292412 "cation transporter" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

POMBASE\|SPAC3F10.02c trk1 "potassium ion transporter Trk1" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

POMBASE\|SPAC1639.02c trk2 "potassium ion transporter Trk2" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6H501	HKT6_ORYSJ	No assigned EC number	0.4898	0.9380	0.9716	yes	no
Q84TI7	HKT1_ARATH	No assigned EC number	0.4969	0.8251	0.8952	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0073008901	sodium transporter hkt1-like protein (507 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		549
TIGR00934		800	TIGR00934, 2a38euk, potassium uptake protein, Trk	1e-93
pfam02386		334	pfam02386, TrkH, Cation transport protein	3e-33
TIGR00934		800	TIGR00934, 2a38euk, potassium uptake protein, Trk	2e-16
COG0168		499	COG0168, TrkG, Trk-type K+ transport systems, memb	2e-15
TIGR00933		390	TIGR00933, 2a38, potassium uptake protein, TrkH fa	2e-12

>gnl\|CDD\|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family	Back alignment and domain information

 Score =  302 bits (775), Expect = 1e-93
 Identities = 120/442 (27%), Positives = 205/442 (46%), Gaps = 44/442 (9%)

Query: 137 ENRINPNLTPSSSSSSSSSSSENSTEFTDQIELGIVSHSYITNEEPNNGLENEHRMSSND 196
           E+  N     SS  S   S S     +    +    S   ++     N L  +  +  N 
Sbjct: 368 EDNGNHLSASSSFGSEEPSLSSEENLYPTYNKKREDSRHTLSKTMSTNYLSWQPTIGRNS 427

Query: 197 DNL-------------KYNSVRVLVYVVLGYILVTHVVGSSLVALYTSLAPSAKQILKQK 243
           + +             +Y +++ L  +VL Y L  +++G  L+  + +   +  ++++ K
Sbjct: 428 NFVGLTKEQKDELGGIEYRALKCLCSIVLVYFLGFNILGFVLLLPWINHVKTYSEVVRSK 487

Query: 244 GLQIFTFSVFTTASTFSNCGFVPTNENMMVFKKNALLLLILFPQGLLGNTLYPSCLRFVI 303
           G+    +  FT  S F+N G   T E+M+ F KN+ LLL++    ++GNT +P  LR +I
Sbjct: 488 GVSPTWWGFFTAMSAFANLGLTLTPESMVSFNKNSYLLLLMIWFIIIGNTGFPIFLRLII 547

Query: 304 WVLKKIT----NREEFDYILRNSKEMIYRHLLSKAYSYFLAITVFGFIFVQLVLFCALEW 359
           W+L KI+     R+E    L +     +  L     +++L  T+ G   + L+LF  L+W
Sbjct: 548 WILFKISPDLSKRKESLGFLLDHPRRCFTLLFPSGATWWLFFTLVGLNAIDLILFIILDW 607

Query: 360 DSEATDGLNFFEKLVASLFQVVNSRHTGESVFDISIISPAILVLFVVMMYLPPYTSFWPS 419
            S   DGL+   K++  LFQ V++R  G +V D+S + PAI V +++MMY+         
Sbjct: 608 GSSVVDGLSKGIKVLNGLFQSVSTRTAGFTVVDLSQLHPAIQVSYMLMMYVSVLPLAISI 667

Query: 420 RNREGDSRNFKEKKNKK----------KTFVQNFIFSQLS----YLVIFIILVCITERDK 465
           R             N++          K+F+   +  QLS    Y+ + + ++CI E  K
Sbjct: 668 RRTNVYEEQSLGLYNEENEEHEGESSTKSFIGAHLRRQLSFDLWYIFLGLFIICICEGRK 727

Query: 466 MKK-DPLNFNVLNVTIEVISAYGNVGFSTGYSCKRQLRPDSSCKDAWYGFVGRWSNQGKV 524
           ++  DP NFNV N+  EV+SAYG VG S GYSC              Y F G+++   K+
Sbjct: 728 IQDPDPPNFNVFNILFEVVSAYGTVGLSLGYSCSN------------YSFSGQFTTLSKL 775

Query: 525 ILILVMFFGRIKKFNMKGGKAW 546
           ++I ++  GR +       +A 
Sbjct: 776 VIIAMLIRGRHRGLPYALDRAI 797

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system [Transport and binding proteins, Cations and iron carrying compounds]. Length = 800

>gnl\|CDD\|217009 pfam02386, TrkH, Cation transport protein	Back alignment and domain information

>gnl\|CDD\|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family	Back alignment and domain information

>gnl\|CDD\|223246 COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|233196 TIGR00933, 2a38, potassium uptake protein, TrkH family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		549
TIGR00934		800	2a38euk potassium uptake protein, Trk family. The	100.0
PRK10750		483	potassium transporter; Provisional	100.0
TIGR00933		390	2a38 potassium uptake protein, TrkH family. The pr	100.0
COG0168		499	TrkG Trk-type K+ transport systems, membrane compo	100.0
KOG1341		854	consensus Na+/K+ transporter [Inorganic ion transp	100.0
PF02386		354	TrkH: Cation transport protein; InterPro: IPR00344	100.0
PRK05482		559	potassium-transporting ATPase subunit A; Provision	99.96
TIGR00933		390	2a38 potassium uptake protein, TrkH family. The pr	99.91
TIGR00934		800	2a38euk potassium uptake protein, Trk family. The	99.72
PRK10750		483	potassium transporter; Provisional	99.65
COG0168		499	TrkG Trk-type K+ transport systems, membrane compo	99.6
PF02386		354	TrkH: Cation transport protein; InterPro: IPR00344	99.55
PRK05482		559	potassium-transporting ATPase subunit A; Provision	98.67
KOG1341		854	consensus Na+/K+ transporter [Inorganic ion transp	97.86
PF03814		552	KdpA: Potassium-transporting ATPase A subunit; Int	97.56
COG2060		560	KdpA K+-transporting ATPase, A chain [Inorganic io	97.26
TIGR00680		563	kdpA K+-transporting ATPase, KdpA. Kdp is a high a	96.8
TIGR00680		563	kdpA K+-transporting ATPase, KdpA. Kdp is a high a	83.76

>TIGR00934 2a38euk potassium uptake protein, Trk family	Back alignment and domain information

Probab=100.00  E-value=1.1e-72  Score=621.09  Aligned_cols=334  Identities=31%  Similarity=0.576  Sum_probs=296.5

Q ss_pred             ccCchHhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhccchhHHHHHHHhhhcccCccccccCCcccccccChh
Q 045809          200 KYNSVRVLVYVVLGYILVTHVVGSSLVALYTSLAPSAKQILKQKGLQIFTFSVFTTASTFSNCGFVPTNENMMVFKKNAL  279 (549)
Q Consensus       200 ~~~~~~~l~~~i~~~~~~i~~iGallL~l~~~~~~~~~~~~~~~~~~~~~~AiF~avSAf~naGFs~~~~sl~~y~~~~~  279 (549)
                      ||++++.|.++++.|+++++++|++++..|+...+.+++.++..|.+++|+|+|||+||||||||++.++||++|+++++
T Consensus       444 EYRaLk~L~~Iv~~Y~~~~~llG~i~l~~wi~~~~~~~~~l~~~gin~~W~aiFhAVSAFnNAGFsL~~dSM~~F~~~~~  523 (800)
T TIGR00934       444 EYRALKCLCSIVLVYFLGFNILGFVLLLPWINHVKTYSEVVRSKGVSPTWWGFFTAMSAFANLGLTLTPESMVSFNKNSY  523 (800)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHhhcCccHHHHHHHHHHHHHhcCCCCcCCCcchhhccCcc
Confidence            89999999999999999999999999999987767777778788889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhhcc-----hhhhHHHHhcchhhHHhhhcchhHHHHHHHHHHHHHHHHHHHH
Q 045809          280 LLLILFPQGLLGNTLYPSCLRFVIWVLKKITN-----REEFDYILRNSKEMIYRHLLSKAYSYFLAITVFGFIFVQLVLF  354 (549)
Q Consensus       280 v~~vi~~liilGGlgF~v~~~~i~~~~~r~~~-----~~~~~~ll~~~r~~~~~~l~~s~~tk~vl~~~~~l~~ig~il~  354 (549)
                      +++++++||++||+|||+++++++|...|..+     ++.+.++++||||| +.++||+.+||+++.++++|++++++++
T Consensus       524 vllvm~~LIi~GntGFPVllrliiw~~~k~~~~~s~~~e~l~fll~~pRr~-~s~Lfps~~T~ill~tt~iL~~ig~ilf  602 (800)
T TIGR00934       524 LLLLMIWFIIIGNTGFPIFLRLIIWILFKISPDLSKRKESLGFLLDHPRRC-FTLLFPSGATWWLFFTLVGLNAIDLILF  602 (800)
T ss_pred             HHHHHHHHHHHcccchHHHHHHHHHHHhhccccccchhhhhhhhccCccce-ecccccccchhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998766542     33455677888876 7778999999999999999999999999


Q ss_pred             HHHhcccccCCCCCHHHHHHHHHHHHhccCCcccccccCCCchhHHHHHHHHHHhcCCcceEEe----------------
Q 045809          355 CALEWDSEATDGLNFFEKLVASLFQVVNSRHTGESVFDISIISPAILVLFVVMMYLPPYTSFWP----------------  418 (549)
Q Consensus       355 ~l~e~~~~~~~~~~~~~~l~~slFqsvSarTAGFst~d~~~~s~~~~~lliiLMfIGgstt~~~----------------  418 (549)
                      +++||+|++++++|+++|+++|+||++++|||||+++|++.+++++++++++|||||++|+..-                
T Consensus       603 ~lLE~nn~tl~~lp~g~Ril~aLFQSVstRTAGFntVdls~Lspatlvl~iiLMyIGa~PtaggIK~TTvyee~sLgi~~  682 (800)
T TIGR00934       603 IILDWGSSVVDGLSKGIKVLNGLFQSVSTRTAGFTVVDLSQLHPAIQVSYMLMMYVSVLPLAISIRRTNVYEEQSLGLYN  682 (800)
T ss_pred             HHHhcCccccccCCHHHHHHHHHHHhcccccccccccchHhcChhHHHHHHHHHHhccCCccceeeceeeeheeheeeee
Confidence            9999998889999999999999999999999999999999999999999999999998764221                


Q ss_pred             ccccccccccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CCCcccHHHHHHHHhhcccCccCCCCccC
Q 045809          419 SRNREGDSRNFKEKKNKKKTFVQNFIFSQLSYLVIFIILVCITERDKMKK-DPLNFNVLNVTIEVISAYGNVGFSTGYSC  497 (549)
Q Consensus       419 ~r~~~~~~~~~~~r~i~~~~~~~a~~~~~l~~~~~~~~~l~~~e~~~~~~-~~~~~~~~~~lFEvvSA~gtvGlS~G~~~  497 (549)
                      .+++++.... ++|++..+.+++++.+. +++++++++++|++|++++.. +|.++++++++|||+|||||||||+|+  
T Consensus       683 ~~g~~~~~~~-~~rsi~~~~irrqLs~d-lw~I~l~~flI~I~E~~~l~~~~~~~fs~f~ILFEVVSAyGTVGLSlG~--  758 (800)
T TIGR00934       683 EENEEHEGES-STKSFIGAHLRRQLSFD-LWYIFLGLFIICICEGRKIQDPDPPNFNVFNILFEVVSAYGTVGLSLGY--  758 (800)
T ss_pred             ccCCcccccc-ccccccHHHHHHHHHHH-HHHHHHHHHHHHHhcCccccccccccccHHHHHhhhhhhccceeecCCC--
Confidence            2333333113 67788888888887765 667778889999999766543 667799999999999999999999998  


Q ss_pred             cccCCCCCCCCCcccccccccChhhHHHHHHHHHhccCCccccCCCccccc
Q 045809          498 KRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMFFGRIKKFNMKGGKAWQI  548 (549)
Q Consensus       498 ~~~~~~~~~~~~~~~s~t~~l~~~~Klili~lM~iGRl~~~t~~gg~~~~~  548 (549)
                                |+.+||||++|++.||+|+|++|++||||++|.+.++||..
T Consensus       759 ----------p~~~~SfSg~ls~~sKLVII~vM~~GRhggLP~alDrAi~L  799 (800)
T TIGR00934       759 ----------SCSNYSFSGQFTTLSKLVIIAMLIRGRHRGLPYALDRAIIL  799 (800)
T ss_pred             ----------CCcccccCCCCCcchHHHHhHHHHccCCCCCcccccceecC
Confidence                      47799999999999999999999999999999999999975

>PRK10750 potassium transporter; Provisional	Back alignment and domain information

>TIGR00933 2a38 potassium uptake protein, TrkH family	Back alignment and domain information

>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1341 consensus Na+/K+ transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3	Back alignment and domain information

>PRK05482 potassium-transporting ATPase subunit A; Provisional	Back alignment and domain information

>TIGR00933 2a38 potassium uptake protein, TrkH family	Back alignment and domain information

>TIGR00934 2a38euk potassium uptake protein, Trk family	Back alignment and domain information

>PRK10750 potassium transporter; Provisional	Back alignment and domain information

>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3	Back alignment and domain information

>PRK05482 potassium-transporting ATPase subunit A; Provisional	Back alignment and domain information

>KOG1341 consensus Na+/K+ transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF03814 KdpA: Potassium-transporting ATPase A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli	Back alignment and domain information

>COG2060 KdpA K+-transporting ATPase, A chain [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00680 kdpA K+-transporting ATPase, KdpA	Back alignment and domain information

>TIGR00680 kdpA K+-transporting ATPase, KdpA	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		549
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 44.8 bits (105), Expect = 7e-05
 Identities = 74/481 (15%), Positives = 159/481 (33%), Gaps = 123/481 (25%)

Query: 37  KVNPLW--IQL--SYFISISSVGYLILR--VSKPRDSSFINPKNIDVFFTSVSAMTGSSM 90
           + + L+   Q+   Y +S     YL LR  + + R +  +           +  + GS  
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQP-YLKLRQALLELRPAKNV----------LIDGVLGSGK 163

Query: 91  STVEMEVFSNFQLIIMTILMFVGGEVF-ISMFGLH-ARSKFYSLNQLFENRINPNLTPSS 148
           + V ++V  +++     +   +  ++F +++   +   +    L +L   +I+PN T  S
Sbjct: 164 TWVALDVCLSYK-----VQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRS 217

Query: 149 SSSSSSSSSENSTEFTDQIELGIVSHSYITNEEPNNGLENEHRMSSND--DNLKYNSV-- 204
             SS+     +S +   ++   + S  Y       N L             N++      
Sbjct: 218 DHSSNIKLRIHSIQ--AELRRLLKSKPY------ENCL---------LVLLNVQNAKAWN 260

Query: 205 ------RVLVYVVLGYILVTHVVGSSLVALYTSLAPSAKQILKQKGLQIFTFSVFTTAST 258
                 ++L  +   +  VT  + ++    + SL   +  +   +   +           
Sbjct: 261 AFNLSCKIL--LTTRFKQVTDFLSAATTT-HISLDHHSMTLTPDEVKSLL--------LK 309

Query: 259 FSNCGF--VPTNENMMVFKKNALLLLILFPQGLLGNTLYPSCLRFVIWVLKKITNREEFD 316
           + +C    +P  E   V   N   L       ++  ++      +  W   K  N ++  
Sbjct: 310 YLDCRPQDLP-RE---VLTTNPRRL------SIIAESIRDGLATWDNW---KHVNCDKLT 356

Query: 317 YILRNSKEMIYRHLLSKAYSYFLAITVFGFIF-----VQLVLFCALEWDSEATDGLNFFE 371
            I+ +S  ++      K +           +F     +  +L   + +D   +D +    
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRL-------SVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 372 KLVA-SLFQVVNSRHTGESVFDISIISPAILVLFVVMMYLPPYTSFWPSRNREGDSRNFK 430
           KL   SL +    +   ES   I    P+I +   V              N     R+  
Sbjct: 410 KLHKYSLVE----KQPKESTISI----PSIYLELKV-----------KLENEYALHRSIV 450

Query: 431 EKKNKKKTF---------VQNFIFSQLSYLVIFIILVCITER-DKMKKDPLNFNVLNVTI 480
           +  N  KTF         +  + +S + + +  I      ER    +   L+F  L   I
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH---PERMTLFRMVFLDFRFLEQKI 507

Query: 481 E 481
            
Sbjct: 508 R 508

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		549
3pjz_A		494	Potassium uptake protein TRKH; structural genomics	100.0
3pjz_A		494	Potassium uptake protein TRKH; structural genomics	99.73
3ukm_A		280	Potassium channel subfamily K member 1; membrane p	91.13
3um7_A		309	Potassium channel subfamily K member 4; potassium	89.55
3ukm_A		280	Potassium channel subfamily K member 1; membrane p	89.18
3vou_A		148	ION transport 2 domain protein, voltage-gated SOD	88.42
3um7_A		309	Potassium channel subfamily K member 4; potassium	88.15
2k1e_A		103	Water soluble analogue of potassium channel, KCSA;	87.41
3ouf_A		97	Potassium channel protein; ION channel, membrane,	85.97
2q67_A		114	Potassium channel protein; inverted teepee, helix	82.97
2ih3_C		122	Voltage-gated potassium channel; ION channel D-ami	82.49
3eff_K		139	Voltage-gated potassium channel; FULL length KCSA,	82.05
3eff_K		139	Voltage-gated potassium channel; FULL length KCSA,	81.46
2a9h_A		155	Voltage-gated potassium channel; potassium channel	81.35

>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}	Back alignment and structure

Probab=100.00  E-value=1.1e-57  Score=493.42  Aligned_cols=383  Identities=15%  Similarity=0.132  Sum_probs=281.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccchhheecccccccccceee-CCccChHHHHHHHHHHHHhhhHHHHH
Q 045809           42 WIQLSYFISISSVGYLILRVSKPRDSSFINPKNIDVFFTSVSAMTGSSMSTVE-MEVFSNFQLIIMTILMFVGGEVFISM  120 (549)
Q Consensus        42 ~i~~~~f~~i~~iG~~lL~l~~~~~~~~~~~s~~DAlF~avSAvt~TGLs~vd-~~~~s~~gq~vl~~LiqiGGlg~~s~  120 (549)
                      .+..+.|++++++|++++++. .    ..+++|+||+|||+||+|+||++++| .|+.+..-....-+++|+||+|++++
T Consensus        71 ~~v~l~W~~~~~~galPf~~~-~----~~~~s~~dA~Fes~Sg~TtTG~tv~~~~~~lp~~~l~wr~~l~wlGGlGiivl  145 (494)
T 3pjz_A           71 LIVVLFWTVLGSAGSLPFLIA-D----NPNISVTDAFFESFSALTTTGATVIVGLDELPKAILFYRQFLQWFGGMGIIVL  145 (494)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-C----SSCCCHHHHHHHHHHHHTTCCCCCCCCCSSSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-C----CCCCcHHHHHHHHHHHhhcCCeEEecChhhccchHHHHHHHHHHHhhHHHHHH
Confidence            566789999999999999972 1    12478999999999999999999998 47655433333337999999999999


Q ss_pred             HHHHH-hhccchhhhhhhcccCCCCCCCCCCCCCCCCCCCCcccccchhhcccccccccCCCCCCCcccccccCCCCccc
Q 045809          121 FGLHA-RSKFYSLNQLFENRINPNLTPSSSSSSSSSSSENSTEFTDQIELGIVSHSYITNEEPNNGLENEHRMSSNDDNL  199 (549)
Q Consensus       121 ~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  199 (549)
                      ...++ ..+.+.++...     +|.              +.|.+                +               +++ 
T Consensus       146 a~ail~~lg~~~~~l~~-----ae~--------------~g~~~----------------~---------------~k~-  174 (494)
T 3pjz_A          146 AVAILPVLGIGGMQLYR-----AEI--------------PGPVK----------------D---------------TKM-  174 (494)
T ss_dssp             TTSSTTTTSCCCC-------------------------------------------------------------------
T ss_pred             HHHHHHHcCCchhhhHH-----Hhc--------------cCCcc----------------c---------------ccc-
Confidence            87766 33322222211     110              00000                0               111 


Q ss_pred             ccCchHhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhccchhHHHHHHHhhhcccCccccccCCcccccccChh
Q 045809          200 KYNSVRVLVYVVLGYILVTHVVGSSLVALYTSLAPSAKQILKQKGLQIFTFSVFTTASTFSNCGFVPTNENMMVFKKNAL  279 (549)
Q Consensus       200 ~~~~~~~l~~~i~~~~~~i~~iGallL~l~~~~~~~~~~~~~~~~~~~~~~AiF~avSAf~naGFs~~~~sl~~y~~~~~  279 (549)
                       ...++...|.++.+|+.++++++++++  ..   +          +++|||+|||+||+||||||+.|+|+.+| +|+.
T Consensus       175 -~p~i~~ta~~l~~iy~~lt~~~~l~l~--~~---G----------m~~fdAi~Ha~Sa~~tgGFs~~~~Si~~~-~s~~  237 (494)
T 3pjz_A          175 -TPRIAETAKALWYIYLSLTIACAVAFW--LA---G----------MTPFDAISHSFSTIAIGGFSTHDASMGYF-DSYA  237 (494)
T ss_dssp             -CSSSHHHHHHHHHHHHHHHHHHHHHHH--HH---T----------CCSHHHHTTTHHHHTTCCCCSSTTGGGSS-CCTT
T ss_pred             -CccHHHHHHHHHHHHHHHHHHHHHHHH--Hc---C----------CcHHHHHHHHHHHHhCCCCCCccchhhhh-cCHH
Confidence             223345567777888899988766643  21   2          67999999999999999999999999888 6899


Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHhcchhhHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 045809          280 LLLILFPQGLLGNTLYPSCLRFVIWVLKKITNREEFDYILRNSKEMIYRHLLSKAYSYFLAITVFGFIFVQLVLFCALEW  359 (549)
Q Consensus       280 v~~vi~~liilGGlgF~v~~~~i~~~~~r~~~~~~~~~ll~~~r~~~~~~l~~s~~tk~vl~~~~~l~~ig~il~~l~e~  359 (549)
                      ++++++++|++||+||++++++.  .  +  ++++            +++++++.|+|+++.+++++.+++++.++..|.
T Consensus       238 i~~vi~~~milggl~F~v~~~~~--~--~--~~~~------------~~~~~~~~e~r~~l~~~~~~~~~~~~~l~~~~~  299 (494)
T 3pjz_A          238 INLITVVFLLISACNFTLHFAAF--A--S--GGVH------------PKYYWKDPEFRAFIFIQVLLFLVCFLLLLKHHS  299 (494)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHT--T--T--STTC------------HHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHH--h--c--ccch------------hhHHhCCcHHHhhHHHHHHHHHHHHHHHHHccc
Confidence            99999999999999999998852  1  0  0001            122233678898888777666666554443221


Q ss_pred             ccccCCCCCHHHHHHHHHHHHhccCCc-ccccccCCCchhHHHHHHHHHHhcCC---cceEE---------------ecc
Q 045809          360 DSEATDGLNFFEKLVASLFQVVNSRHT-GESVFDISIISPAILVLFVVMMYLPP---YTSFW---------------PSR  420 (549)
Q Consensus       360 ~~~~~~~~~~~~~l~~slFqsvSarTA-GFst~d~~~~s~~~~~lliiLMfIGg---stt~~---------------~~r  420 (549)
                          +  .++.+++++++||++|+||+ ||++.|+++|++.++++++++|||||   ||+..               .+|
T Consensus       300 ----~--~~~~~~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~~GSTaGGIKv~r~~il~~~~~~el~  373 (494)
T 3pjz_A          300 ----Y--TSPYDAFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGCAGSTGGGMKVIRILLLTLQGARELK  373 (494)
T ss_dssp             ----C--SSHHHHHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSCTTSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred             ----c--CCHHHHHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCCcccCCCchhHHHHHHHHHHHHHHHh
Confidence                1  16899999999999999765 99999999999999999999999987   55421               123


Q ss_pred             ccccc-----cccccCcccchhHHHHHHHHHHHHHHHH--HHHHHHHHcCCCCCCCCCcccHHHHHHHHhhcccCccCCC
Q 045809          421 NREGD-----SRNFKEKKNKKKTFVQNFIFSQLSYLVI--FIILVCITERDKMKKDPLNFNVLNVTIEVISAYGNVGFST  493 (549)
Q Consensus       421 ~~~~~-----~~~~~~r~i~~~~~~~a~~~~~l~~~~~--~~~~l~~~e~~~~~~~~~~~~~~~~lFEvvSA~gtvGlS~  493 (549)
                      +..+.     .++ ++|+++++.++++..++.++.+.+  +++++...+          .|+.+++||++||++|||+|+
T Consensus       374 ~~~~P~~v~~v~~-~~r~i~~~~v~~~~~~~~ly~~~~~~~~~~l~~~g----------~~~~~a~~~v~Sal~nvG~s~  442 (494)
T 3pjz_A          374 RLVHPRAVYTIKV-GGSALPQRVVDAVWGFFSAYALVFVVCMLGLIATG----------MDELSAFSAVAATLNNLGPGL  442 (494)
T ss_dssp             HHHCSSSCCCCCS-SSCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS----------SCHHHHHHHHHHHTTTCCSCC
T ss_pred             cccCCCcceeeeE-CCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------ccHHHHHHHHHHHHcCCCCcc
Confidence            32111     134 889999999999988877776543  344444443          689999999999999999999


Q ss_pred             CccCcccCCCCCCCCCcccccccccChhhHHHHHHHHHhccCCcccc---CCCcccc
Q 045809          494 GYSCKRQLRPDSSCKDAWYGFVGRWSNQGKVILILVMFFGRIKKFNM---KGGKAWQ  547 (549)
Q Consensus       494 G~~~~~~~~~~~~~~~~~~s~t~~l~~~~Klili~lM~iGRl~~~t~---~gg~~~~  547 (549)
                      |..     +|       +|   +++|+.+|++++++|++||+|++|+   ..+++||
T Consensus       443 G~v-----g~-------~~---~~L~~~~K~vl~~~M~~GRLei~tvl~l~~p~fWr  484 (494)
T 3pjz_A          443 GEV-----AL-------HF---GDVNDKAKWVLIVSMLFGRLEIFTLLILLTPTFWR  484 (494)
T ss_dssp             SSS-----CC-------CC---SSSCHHHHHHHHHHHHHHHTTTHHHHTTSCSTTCC
T ss_pred             ccc-----CC-------Cc---ccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            974     22       34   5999999999999999999999997   7899997

PyMOL of 3pjz

>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}	Back alignment and structure

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}	Back alignment and structure

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}	Back alignment and structure

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}	Back alignment and structure

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}	Back alignment and structure

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}	Back alignment and structure

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A	Back alignment and structure

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A	Back alignment and structure

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A	Back alignment and structure

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...	Back alignment and structure

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}	Back alignment and structure

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}	Back alignment and structure

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		549
d1r3jc_		103	Potassium channel protein {Streptomyces coelicolor	88.89
d1p7ba2		116	Inward rectifier potassium channel Kirbac1.1 {Burk	83.98
d1r3jc_		103	Potassium channel protein {Streptomyces coelicolor	83.29

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=88.89  E-value=0.91  Score=35.92  Aligned_cols=63  Identities=14%  Similarity=0.007  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHhccCCcccccccCCCchhHHHHHHHHHHhcCC
Q 045809          345 GFIFVQLVLFCALEWDSEATDGLNFFEKLVASLFQVVNSRHTGESVFDISIISPAILVLFVVMMYLPP  412 (549)
Q Consensus       345 ~l~~ig~il~~l~e~~~~~~~~~~~~~~l~~slFqsvSarTAGFst~d~~~~s~~~~~lliiLMfIGg  412 (549)
                      +..+++..++++.|.+.+.-+-.++.|+++-++   ++..|.||  .|+..-++..+++.++.|++|-
T Consensus        17 ~~~~~~s~~~~~~e~~~~~~~~~s~~~aly~~~---vT~tTvGY--GDi~P~t~~gr~~~~~~~~~Gi   79 (103)
T d1r3jc_          17 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSV---ETATTVGY--GDLYPVTLWGRCVAVVVMVAGI   79 (103)
T ss_dssp             HHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHH---HHHTTCCC--SSSCCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcccCchhhhhhhhe---eeeccccc--CccccCChhHHHHHHHHHHHHH
Confidence            344556666777775443111224555443332   44488898  5667778889999999888874

PyMOL of d1r3jc_

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}	Back information, alignment and structure

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure