Citrus Sinensis ID: 045898

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------5
Protein Sequence
MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEcccccccEEEEEEcccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEcccccccccEEEEcccccEEEEEccccc
Coil and Loop (DISEMBL)
MATFGAAAvatnqnpnksievsqppsdsvsslcfspkaNILVATSWDNQ
Flexible Loop (DISEMBL)
MATFGAAAvatnqnpnksieVSQPPSDSVSSLCFSPKANILVATSWDNQ
Low Complexity Region (SEG)
MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ
Disordered region (IsUnstruct)
*************************************ANILVA******
Disordered Region (DISOPRED)
**********************QPPSDSVSSLCFSPKANILVATSWD**
Disordered Region (DISEMBL)
MATFGAAAVATNQNPNK**************LCFSPKANILVATSWDNQ
Disordered Region (DISPRO)
****************KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	49	2.2.26 [Sep-21-2011]
Q38942	349	Rae1-like protein At1g806	yes	no	0.979	0.137	0.734	5e-12
P41838	352	Poly(A)+ RNA export prote	yes	no	1.0	0.139	0.471	2e-06
Q5FVA9	368	mRNA export factor OS=Xen	yes	no	0.755	0.100	0.55	0.0004

>sp|Q38942|RAE1L_ARATH Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670 PE=2 SV=2

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 41/49 (83%), Gaps = 1/49 (2%)

Query: 1  MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
          MATFGA A A N NPNKS EV+  P+DS+SSL FSP+A+ILVATSWDNQ
Sbjct: 1  MATFGAPATA-NSNPNKSYEVTPSPADSISSLSFSPRADILVATSWDNQ 48

Arabidopsis thaliana (taxid: 3702)

>sp|P41838|RAE1_SCHPO Poly(A)+ RNA export protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rae1 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 1  MATFGAAAVATNQNP----NKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
          M+ FG A  +T  N      K +EV+QPP DS+S L FSP+A  L A+SWD++
Sbjct: 1  MSLFGQATTSTVSNATGDLKKDVEVAQPPEDSISDLAFSPQAEYLAASSWDSK 53

Required for mitotic cell growth as well as for spore germination. Functions in cell cycle progression through trafficking of proteins required for mitosis. Has a role in the mRNA export process.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5FVA9|RAE1L_XENTR mRNA export factor OS=Xenopus tropicalis GN=rae1 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 12 NQNPNKSIEVSQPPSDSVSSLCFSP---KANILVATSWDN 48
          N NP K IEV+ PP DS+S L FSP     N L+A SW N
Sbjct: 25 NHNPMKDIEVTSPPDDSISCLSFSPPTLPGNFLIAGSWAN 64

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	49
255572775	349	plant poly(A)+ RNA export protein, putat	0.979	0.137	0.938	2e-16
363807134	347	uncharacterized protein LOC100780721 [Gl	0.938	0.132	0.816	1e-13
363806810	347	uncharacterized protein LOC100819240 [Gl	0.938	0.132	0.795	2e-13
194466247	179	putative mRNA export protein [Arachis hy	0.918	0.251	0.755	3e-12
357517225	400	Pre-mRNA-splicing factor prp46 [Medicago	0.959	0.117	0.775	5e-12
109390024	347	RNA export 1 [Nicotiana benthamiana]	0.979	0.138	0.816	1e-11
242053751	344	hypothetical protein SORBIDRAFT_03g02897	1.0	0.142	0.76	4e-11
168011685	347	predicted protein [Physcomitrella patens	1.0	0.141	0.673	7e-11
297839869	349	transducin family protein [Arabidopsis l	0.979	0.137	0.734	2e-10
225443109	345	PREDICTED: rae1-like protein At1g80670 [	0.918	0.130	0.755	2e-10

>gi|255572775|ref|XP_002527320.1| plant poly(A)+ RNA export protein, putative [Ricinus communis] gi|223533320|gb|EEF35072.1| plant poly(A)+ RNA export protein, putative [Ricinus communis]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/49 (93%), Positives = 46/49 (93%), Gaps = 1/49 (2%)

Query: 1  MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
          MATFGAAA A NQNPNKSIEVSQPPSDSVSSLCFSPKAN LVATSWDNQ
Sbjct: 1  MATFGAAATA-NQNPNKSIEVSQPPSDSVSSLCFSPKANFLVATSWDNQ 48

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807134|ref|NP_001242596.1| uncharacterized protein LOC100780721 [Glycine max] gi|255641855|gb|ACU21196.1| unknown [Glycine max]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 43/49 (87%), Gaps = 3/49 (6%)

Query: 1  MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
          M+TFGAAA   N NPNKS EV+QPPSDS+SSLCFSPKAN LVATSWDNQ
Sbjct: 1  MSTFGAAA---NTNPNKSYEVAQPPSDSISSLCFSPKANFLVATSWDNQ 46

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806810|ref|NP_001242030.1| uncharacterized protein LOC100819240 [Glycine max] gi|255638763|gb|ACU19686.1| unknown [Glycine max]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 43/49 (87%), Gaps = 3/49 (6%)

Query: 1  MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
          M+TFGAAA   N NPNKS EV+QPPSDS+SS+CFSPKAN LVATSWDNQ
Sbjct: 1  MSTFGAAA---NTNPNKSYEVAQPPSDSISSICFSPKANFLVATSWDNQ 46

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194466247|gb|ACF74354.1| putative mRNA export protein [Arachis hypogaea]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 41/49 (83%), Gaps = 4/49 (8%)

Query: 1  MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
          M+TFG+A    N NPNKS EV+QPP DS+SSLCFSPKAN LVATSWDNQ
Sbjct: 1  MSTFGSA----NTNPNKSYEVTQPPGDSISSLCFSPKANFLVATSWDNQ 45

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517225|ref|XP_003628901.1| Pre-mRNA-splicing factor prp46 [Medicago truncatula] gi|355522923|gb|AET03377.1| Pre-mRNA-splicing factor prp46 [Medicago truncatula]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/49 (77%), Positives = 42/49 (85%), Gaps = 2/49 (4%)

Query: 1  MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
          M++FGAA   TN NPNKS EVSQPP+DS+SSL FSPKAN LVATSWDNQ
Sbjct: 1  MSSFGAAN--TNTNPNKSYEVSQPPTDSISSLSFSPKANFLVATSWDNQ 47

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109390024|gb|ABG29731.1| RNA export 1 [Nicotiana benthamiana]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 42/49 (85%), Gaps = 1/49 (2%)

Query: 1  MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
          M+ FGAAA A N NPNKS EV QPPSDSVSSLCFSPKAN L+ATSWDNQ
Sbjct: 1  MSIFGAAA-AANTNPNKSTEVQQPPSDSVSSLCFSPKANFLIATSWDNQ 48

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242053751|ref|XP_002456021.1| hypothetical protein SORBIDRAFT_03g028970 [Sorghum bicolor] gi|241927996|gb|EES01141.1| hypothetical protein SORBIDRAFT_03g028970 [Sorghum bicolor]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 41/50 (82%), Gaps = 1/50 (2%)

Query: 1  MATFG-AAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
          MATFG A A A NQNPNKS+EV+  P DSVSSL FSPKAN LV+TSWDNQ
Sbjct: 1  MATFGTAGASAANQNPNKSVEVTPAPGDSVSSLSFSPKANHLVSTSWDNQ 50

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168011685|ref|XP_001758533.1| predicted protein [Physcomitrella patens subsp. patens] gi|162690143|gb|EDQ76511.1| predicted protein [Physcomitrella patens subsp. patens]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 38/49 (77%)

Query: 1  MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
          MA+FG  +     NPNKS EV+QPP+D +SSL FSPKAN LVATSWDNQ
Sbjct: 1  MASFGTLSSTQPHNPNKSFEVNQPPTDGISSLAFSPKANYLVATSWDNQ 49

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839869|ref|XP_002887816.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297333657|gb|EFH64075.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 42/49 (85%), Gaps = 1/49 (2%)

Query: 1  MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
          MATFGA+A A N NPNKS EV+  P+DS+SSL FSP+A+ILVATSWDNQ
Sbjct: 1  MATFGASATA-NINPNKSYEVTPSPADSISSLSFSPRADILVATSWDNQ 48

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443109|ref|XP_002274315.1| PREDICTED: rae1-like protein At1g80670 [Vitis vinifera] gi|297743618|emb|CBI36485.3| unnamed protein product [Vitis vinifera]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 40/49 (81%), Gaps = 4/49 (8%)

Query: 1  MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
          M+ F AA    N NPNKSIEV+QPP+DSVSSL FSPKAN LVATSWDNQ
Sbjct: 1  MSNFSAA----NPNPNKSIEVAQPPTDSVSSLKFSPKANFLVATSWDNQ 45

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	49
TAIR|locus:2025732	349	RAE1 "AT1G80670" [Arabidopsis	0.979	0.137	0.734	3.3e-13
TAIR|locus:2036159	140	AT1G15850 "AT1G15850" [Arabido	1.0	0.35	0.591	9.4e-11
DICTYBASE|DDB_G0283835	342	rae1 "putative mRNA export pro	0.857	0.122	0.581	2.8e-07
POMBASE|SPBC16A3.05c	352	rae1 "RNA export factor, nucle	1.0	0.139	0.471	2.9e-07
UNIPROTKB|E1BVV3	214	Gga.22300 "Uncharacterized pro	0.897	0.205	0.520	1.1e-06
UNIPROTKB|Q7ZZY7	368	Rae1/Gle2 "Rae1/Gle2" [Xenopus	0.897	0.119	0.520	3.1e-06
UNIPROTKB|E1C7F8	368	Gga.22300 "Uncharacterized pro	0.897	0.119	0.520	3.9e-06
UNIPROTKB|B0QZ36	137	RAE1 "mRNA export factor" [Hom	0.897	0.321	0.479	1.5e-05
UNIPROTKB|B0QZ37	87	RAE1 "mRNA export factor" [Hom	0.897	0.505	0.479	1.5e-05
UNIPROTKB|P78406	368	RAE1 "mRNA export factor" [Hom	0.897	0.119	0.479	0.0001

TAIR|locus:2025732 RAE1 "AT1G80670" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 3.3e-13, P = 3.3e-13
 Identities = 36/49 (73%), Positives = 41/49 (83%)

Query:     1 MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
             MATFGA A A N NPNKS EV+  P+DS+SSL FSP+A+ILVATSWDNQ
Sbjct:     1 MATFGAPATA-NSNPNKSYEVTPSPADSISSLSFSPRADILVATSWDNQ 48

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

TAIR|locus:2036159 AT1G15850 "AT1G15850" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/49 (59%), Positives = 37/49 (75%)

Query:     1 MATFGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
             M+T G  A ++  NPN S E++ P +DS+SSL FSPKA+ILVATSWD Q
Sbjct:     1 MSTSGDKATSSTNNPNNSYEITPPATDSISSLSFSPKADILVATSWDCQ 49

GO:0000166 "nucleotide binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

DICTYBASE|DDB_G0283835 rae1 "putative mRNA export protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 124 (48.7 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 25/43 (58%), Positives = 30/43 (69%)

Query:     8 AVATNQNPNKSIEVSQPPSDSVSSLCFSPKAN-ILVATSWDNQ 49
             + +T  NPN  IE+S PPSD VS L FSPKAN  +VA SWD +
Sbjct:     3 STSTTTNPNNDIELSSPPSDGVSCLKFSPKANNFIVAGSWDQK 45

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPBC16A3.05c rae1 "RNA export factor, nucleoporin Rae1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 124 (48.7 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 25/53 (47%), Positives = 34/53 (64%)

Query:     1 MATFGAAAVATNQNPN----KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ 49
             M+ FG A  +T  N      K +EV+QPP DS+S L FSP+A  L A+SWD++
Sbjct:     1 MSLFGQATTSTVSNATGDLKKDVEVAQPPEDSISDLAFSPQAEYLAASSWDSK 53

GO:0000054 "ribosomal subunit export from nucleus" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005643 "nuclear pore" evidence=ISO;IDA

GO:0006606 "protein import into nucleus" evidence=TAS

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IMP

GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IMP

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IMP

UNIPROTKB|E1BVV3 Gga.22300 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 114 (45.2 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 25/48 (52%), Positives = 29/48 (60%)

Query:     4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDN 48
             FG+   A N NP K IEV+ PP DS+S L FSP     N L+A SW N
Sbjct:    18 FGSTT-ADNHNPMKDIEVTSPPDDSISCLAFSPPTLPGNFLIAGSWAN 64

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

UNIPROTKB|Q7ZZY7 Rae1/Gle2 "Rae1/Gle2" [Xenopus laevis (taxid:8355)]

 Score = 115 (45.5 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 25/48 (52%), Positives = 30/48 (62%)

Query:     4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDN 48
             FG+ A   N NP K IEV+ PP DS+S L FSP+    N L+A SW N
Sbjct:    18 FGSTAT-DNHNPMKDIEVASPPDDSISCLSFSPQTLPGNFLIAGSWAN 64

GO:0005515 "protein binding" evidence=IPI

GO:0008017 "microtubule binding" evidence=IDA

UNIPROTKB|E1C7F8 Gga.22300 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 114 (45.2 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 25/48 (52%), Positives = 29/48 (60%)

Query:     4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDN 48
             FG+   A N NP K IEV+ PP DS+S L FSP     N L+A SW N
Sbjct:    18 FGSTT-ADNHNPMKDIEVTSPPDDSISCLAFSPPTLPGNFLIAGSWAN 64

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

UNIPROTKB|B0QZ36 RAE1 "mRNA export factor" [Homo sapiens (taxid:9606)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 23/48 (47%), Positives = 27/48 (56%)

Query:     4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDN 48
             FG+A    N NP K IEV+  P DS+  L FSP     N L+A SW N
Sbjct:    18 FGSATT-DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

UNIPROTKB|B0QZ37 RAE1 "mRNA export factor" [Homo sapiens (taxid:9606)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 23/48 (47%), Positives = 27/48 (56%)

Query:     4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDN 48
             FG+A    N NP K IEV+  P DS+  L FSP     N L+A SW N
Sbjct:    18 FGSATT-DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

UNIPROTKB|P78406 RAE1 "mRNA export factor" [Homo sapiens (taxid:9606)]

 Score = 101 (40.6 bits), Expect = 0.00010, P = 0.00010
 Identities = 23/48 (47%), Positives = 27/48 (56%)

Query:     4 FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSPKA---NILVATSWDN 48
             FG+A    N NP K IEV+  P DS+  L FSP     N L+A SW N
Sbjct:    18 FGSATT-DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008017 "microtubule binding" evidence=ISS

GO:0003723 "RNA binding" evidence=TAS

GO:0005634 "nucleus" evidence=TAS

GO:0005640 "nuclear outer membrane" evidence=TAS

GO:0005643 "nuclear pore" evidence=TAS

GO:0005856 "cytoskeleton" evidence=TAS

GO:0006406 "mRNA export from nucleus" evidence=TAS

GO:0005635 "nuclear envelope" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0008645 "hexose transport" evidence=TAS

GO:0010827 "regulation of glucose transport" evidence=TAS

GO:0015758 "glucose transport" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38942	RAE1L_ARATH	No assigned EC number	0.7346	0.9795	0.1375	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	49
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.004

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 30.4 bits (69), Expect = 0.004
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDN 48
          K +   +  +  V+S+ FSP  N+L + S D 
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDG 33

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	49
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.48
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	98.89
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.08
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	97.75
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.22
KOG0279	315	consensus G protein beta subunit-like protein [Sig	96.79
KOG0266	456	consensus WD40 repeat-containing protein [General	96.45
KOG0645	312	consensus WD40 repeat protein [General function pr	96.23
PTZ00421	493	coronin; Provisional	96.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	95.89
KOG0266	456	consensus WD40 repeat-containing protein [General	95.83
PTZ00421	493	coronin; Provisional	95.69
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.67
KOG0286	343	consensus G-protein beta subunit [General function	95.53
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	95.42
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	95.15
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	94.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	94.66
KOG0973	942	consensus Histone transcription regulator HIRA, WD	94.59
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	94.48
KOG0263	707	consensus Transcription initiation factor TFIID, s	94.43
KOG0641	350	consensus WD40 repeat protein [General function pr	94.21
KOG0278	334	consensus Serine/threonine kinase receptor-associa	94.18
PTZ00420	568	coronin; Provisional	94.1
PLN00181	793	protein SPA1-RELATED; Provisional	93.77
KOG1273	405	consensus WD40 repeat protein [General function pr	93.52
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	93.42
KOG1539	910	consensus WD repeat protein [General function pred	93.36
KOG2096	420	consensus WD40 repeat protein [General function pr	93.25
KOG1063	764	consensus RNA polymerase II elongator complex, sub	93.17
KOG2110	391	consensus Uncharacterized conserved protein, conta	93.11
KOG0645	312	consensus WD40 repeat protein [General function pr	92.81
KOG0283	712	consensus WD40 repeat-containing protein [Function	92.8
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	92.72
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	92.66
KOG0647	347	consensus mRNA export protein (contains WD40 repea	92.6
KOG0772	641	consensus Uncharacterized conserved protein, conta	92.36
PLN00181	793	protein SPA1-RELATED; Provisional	91.84
PTZ00420	568	coronin; Provisional	91.7
KOG1188	376	consensus WD40 repeat protein [General function pr	91.65
KOG2106	626	consensus Uncharacterized conserved protein, conta	91.59
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	91.54
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	91.5
KOG0282	503	consensus mRNA splicing factor [Function unknown]	91.39
KOG1274	933	consensus WD40 repeat protein [General function pr	91.29
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	91.11
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	90.8
KOG0973	942	consensus Histone transcription regulator HIRA, WD	90.15
KOG0288	459	consensus WD40 repeat protein TipD [General functi	89.91
KOG0279	315	consensus G protein beta subunit-like protein [Sig	89.64
KOG0316	307	consensus Conserved WD40 repeat-containing protein	89.54
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	88.86
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	88.61
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	88.45
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	88.4
KOG2111	346	consensus Uncharacterized conserved protein, conta	87.94
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	87.93
KOG0318	603	consensus WD40 repeat stress protein/actin interac	87.68
KOG0293	519	consensus WD40 repeat-containing protein [Function	87.58
KOG2055	514	consensus WD40 repeat protein [General function pr	87.54
KOG0641	350	consensus WD40 repeat protein [General function pr	87.23
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	87.23
PRK01742	429	tolB translocation protein TolB; Provisional	87.15
KOG4328	498	consensus WD40 protein [Function unknown]	86.87
KOG0283	712	consensus WD40 repeat-containing protein [Function	86.7
KOG0318	603	consensus WD40 repeat stress protein/actin interac	86.57
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	86.54
KOG0295	406	consensus WD40 repeat-containing protein [Function	86.41
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	86.18
KOG0300	481	consensus WD40 repeat-containing protein [Function	85.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	85.9
KOG0640	430	consensus mRNA cleavage stimulating factor complex	85.5
KOG0263	707	consensus Transcription initiation factor TFIID, s	85.08
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	84.68
KOG0293	519	consensus WD40 repeat-containing protein [Function	84.39
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	84.33
COG2319	466	FOG: WD40 repeat [General function prediction only	84.3
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	83.98
KOG2110	391	consensus Uncharacterized conserved protein, conta	83.79
KOG1274	933	consensus WD40 repeat protein [General function pr	83.23
KOG4283	397	consensus Transcription-coupled repair protein CSA	83.14
KOG2139	445	consensus WD40 repeat protein [General function pr	83.12
KOG1063	764	consensus RNA polymerase II elongator complex, sub	82.67
KOG0302	440	consensus Ribosome Assembly protein [General funct	82.61
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	82.32
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	82.32
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	82.18
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	81.81
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	81.72
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	80.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	80.8
KOG2096	420	consensus WD40 repeat protein [General function pr	80.71
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	80.58
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	80.58
KOG0295	406	consensus WD40 repeat-containing protein [Function	80.33
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	80.17
KOG0310	487	consensus Conserved WD40 repeat-containing protein	80.02

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.48  E-value=3.3e-14  Score=96.20  Aligned_cols=49  Identities=53%  Similarity=0.925  Sum_probs=40.3

Q ss_pred             CCccCcccc-cccCCCCceEEecCCCCCCeEEEEEcCCC-CeEEEEeccCC
Q 045898            1 MATFGAAAV-ATNQNPNKSIEVSQPPSDSVSSLCFSPKA-NILVATSWDNQ   49 (49)
Q Consensus         1 Ms~fg~~~~-~~~~~~~~~~~l~~~p~D~IS~l~Fsp~~-~~La~sSWD~~   49 (49)
                      ||+||.++. .++.++++++||.+||+|+||+|+|||+. .+|+++|||++
T Consensus         1 ms~Fg~~~~~~~~~~~~kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~t   51 (347)
T KOG0647|consen    1 MSLFGSSASAQTTADPNKDYEVPNPPEDSISALAFSPQADNLLAAGSWDGT   51 (347)
T ss_pred             CCccCCcccccccCCcccceecCCCcccchheeEeccccCceEEecccCCc
Confidence            899996542 22336789999999999999999999965 57779999985

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=98.89  E-value=1.5e-09  Score=73.41  Aligned_cols=33  Identities=39%  Similarity=0.803  Sum_probs=30.9

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+++.+||.|+||+|+|+|+++.|+++|||++
T Consensus         4 ~~~~l~npP~d~IS~v~f~~~~~~LLvssWDgs   36 (323)
T KOG1036|consen    4 NEFELENPPEDGISSVKFSPSSSDLLVSSWDGS   36 (323)
T ss_pred             cccccCCCChhceeeEEEcCcCCcEEEEeccCc
Confidence            678999999999999999999999999999985

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.08  E-value=8.1e-06  Score=37.99  Aligned_cols=31  Identities=29%  Similarity=0.444  Sum_probs=27.0

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.....+.+.|.+|+|+|++++|++++.|++
T Consensus         4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~   34 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGT   34 (39)
T ss_dssp             EEEEESSSSSEEEEEEETTSSEEEEEETTSE
T ss_pred             EEEEcCCCCcEEEEEEecccccceeeCCCCE
Confidence            3445688999999999999999999999973

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.75  E-value=2.5e-05  Score=58.25  Aligned_cols=34  Identities=29%  Similarity=0.609  Sum_probs=31.7

Q ss_pred             CceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           16 NKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        16 ~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+.+++..+|+..|++|+|+|.++.|+++|||+|
T Consensus       468 GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT  501 (893)
T KOG0291|consen  468 GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT  501 (893)
T ss_pred             CeeeehhcCCCCcceeeEEccccCeEEeccccce
Confidence            4778889999999999999999999999999986

>smart00320 WD40 WD40 repeats

Probab=97.22  E-value=0.0011  Score=27.47  Aligned_cols=27  Identities=30%  Similarity=0.446  Sum_probs=23.3

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+.+.|.+|+|.|.++++++++.|++
T Consensus         9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~   35 (40)
T smart00320        9 KGHTGPVTSVAFSPDGKYLASASDDGT   35 (40)
T ss_pred             EecCCceeEEEECCCCCEEEEecCCCe
Confidence            356789999999999999999998873

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=96.79  E-value=0.002  Score=43.86  Aligned_cols=32  Identities=31%  Similarity=0.611  Sum_probs=25.5

Q ss_pred             eEEecCCC-CCCeEEEEEcCCC--CeEEEEeccCC
Q 045898           18 SIEVSQPP-SDSVSSLCFSPKA--NILVATSWDNQ   49 (49)
Q Consensus        18 ~~~l~~~p-~D~IS~l~Fsp~~--~~La~sSWD~~   49 (49)
                      .+++...- .|.|++|+|+|+.  -+++.+|||++
T Consensus       139 k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dkt  173 (315)
T KOG0279|consen  139 KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKT  173 (315)
T ss_pred             EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCce
Confidence            34555444 8999999999994  59999999985

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.45  E-value=0.0057  Score=41.95  Aligned_cols=33  Identities=33%  Similarity=0.485  Sum_probs=29.4

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+....+|.+.|.+++|+|.+++|+++|+|++
T Consensus       237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~t  269 (456)
T KOG0266|consen  237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGT  269 (456)
T ss_pred             eEEEEecCCCCceEEEEecCCCCEEEEecCCCc
Confidence            456667799999999999999999999999975

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=96.23  E-value=0.0044  Score=42.22  Aligned_cols=28  Identities=29%  Similarity=0.459  Sum_probs=24.7

Q ss_pred             cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           22 SQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ...+.-+|.+|+|||.+++||++|.|.+
T Consensus        57 d~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen   57 DDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             cccchheeeeeeecCCCcEEEEeeccce
Confidence            3557789999999999999999999974

>PTZ00421 coronin; Provisional

Probab=96.00  E-value=0.01  Score=41.70  Aligned_cols=28  Identities=18%  Similarity=0.270  Sum_probs=24.4

Q ss_pred             cCCCCCCeEEEEEcC-CCCeEEEEeccCC
Q 045898           22 SQPPSDSVSSLCFSP-KANILVATSWDNQ   49 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp-~~~~La~sSWD~~   49 (49)
                      ...+.+.|.+|+|+| ++++|+++|+|++
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt   99 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGT   99 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence            356889999999999 7889999999974

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=95.89  E-value=0.012  Score=34.00  Aligned_cols=26  Identities=27%  Similarity=0.468  Sum_probs=23.1

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ..+.+.|++++|+|++++|++++.|+
T Consensus         6 ~~h~~~i~~~~~~~~~~~l~~~~~~g   31 (289)
T cd00200           6 KGHTGGVTCVAFSPDGKLLATGSGDG   31 (289)
T ss_pred             cccCCCEEEEEEcCCCCEEEEeecCc
Confidence            36789999999999999999998776

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.83  E-value=0.015  Score=39.90  Aligned_cols=33  Identities=36%  Similarity=0.629  Sum_probs=29.5

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.++....+.+.|+.+.|++++++|+++|+|+.
T Consensus       279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~  311 (456)
T KOG0266|consen  279 ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT  311 (456)
T ss_pred             eEEEeeeccCCceEEEEECCCCCEEEEcCCCcc
Confidence            567777889999999999999999999999873

>PTZ00421 coronin; Provisional

Probab=95.69  E-value=0.024  Score=39.89  Aligned_cols=31  Identities=32%  Similarity=0.433  Sum_probs=26.3

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.....+.+.|.+|+|+|++++|+++++|++
T Consensus       161 ~~~l~~h~~~V~sla~spdG~lLatgs~Dg~  191 (493)
T PTZ00421        161 VEVIKCHSDQITSLEWNLDGSLLCTTSKDKK  191 (493)
T ss_pred             EEEEcCCCCceEEEEEECCCCEEEEecCCCE
Confidence            3444568899999999999999999999974

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.67  E-value=0.025  Score=28.63  Aligned_cols=23  Identities=17%  Similarity=0.424  Sum_probs=20.3

Q ss_pred             CCeEEEEEcCCCCeEEEEeccCC
Q 045898           27 DSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        27 D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..|+.++|||+.++||.++-|+.
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~   34 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGE   34 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCe
Confidence            45999999999999999998863

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=95.53  E-value=0.015  Score=40.01  Aligned_cols=33  Identities=27%  Similarity=0.434  Sum_probs=28.7

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .-+-+...|+-.||+|.-+|+|--|+.+|||.+
T Consensus       306 e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~  338 (343)
T KOG0286|consen  306 ERVGVLAGHENRVSCLGVSPDGMAVATGSWDST  338 (343)
T ss_pred             ceEEEeeccCCeeEEEEECCCCcEEEecchhHh
Confidence            345566789999999999999999999999963

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=95.42  E-value=0.023  Score=40.94  Aligned_cols=30  Identities=30%  Similarity=0.416  Sum_probs=26.1

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      +-....+.+.|.+|+|||++++||.||-|+
T Consensus       445 i~~f~kH~~pVysvafS~~g~ylAsGs~dg  474 (524)
T KOG0273|consen  445 IHTLMKHQEPVYSVAFSPNGRYLASGSLDG  474 (524)
T ss_pred             eEeeccCCCceEEEEecCCCcEEEecCCCC
Confidence            334457899999999999999999999887

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=95.15  E-value=0.013  Score=41.61  Aligned_cols=28  Identities=25%  Similarity=0.383  Sum_probs=25.1

Q ss_pred             cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           22 SQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ...+...|++++|.|+|++|+++|.|.+
T Consensus       257 l~gH~~RVs~VafHPsG~~L~TasfD~t  284 (459)
T KOG0272|consen  257 LEGHLARVSRVAFHPSGKFLGTASFDST  284 (459)
T ss_pred             hhcchhhheeeeecCCCceeeecccccc
Confidence            4567899999999999999999999974

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=94.95  E-value=0.033  Score=38.25  Aligned_cols=30  Identities=13%  Similarity=0.395  Sum_probs=26.2

Q ss_pred             EecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           20 EVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .....+.++|++|.+++-.+.++++|||++
T Consensus        88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~  117 (323)
T KOG1036|consen   88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKT  117 (323)
T ss_pred             eeeccCCCceEEEEeeccCCeEEEcccCcc
Confidence            334578999999999999999999999985

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=94.66  E-value=0.086  Score=30.34  Aligned_cols=27  Identities=33%  Similarity=0.441  Sum_probs=23.6

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+...|.+++|+|++++|++++.|+.
T Consensus       258 ~~~~~~i~~~~~~~~~~~l~~~~~d~~  284 (289)
T cd00200         258 SGHTNSVTSLAWSPDGKRLASGSADGT  284 (289)
T ss_pred             cccCCcEEEEEECCCCCEEEEecCCCe
Confidence            466789999999999999999999873

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.59  E-value=0.041  Score=42.10  Aligned_cols=29  Identities=28%  Similarity=0.296  Sum_probs=24.8

Q ss_pred             EecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           20 EVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      .....+..+|+|++|||+|++||+||=|+
T Consensus        63 ~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   63 CTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             eeeccccCceeEEEECCCCCeEeeccCcc
Confidence            33456889999999999999999999774

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=94.48  E-value=0.053  Score=38.68  Aligned_cols=34  Identities=26%  Similarity=0.298  Sum_probs=30.0

Q ss_pred             CceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           16 NKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        16 ~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+.|.+...+.+.|-+|.|||+|.+||+||=|++
T Consensus       335 gr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt  368 (459)
T KOG0272|consen  335 GRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT  368 (459)
T ss_pred             CcEEEEecccccceeeEeECCCceEEeecCCCCc
Confidence            3667778889999999999999999999998864

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=94.43  E-value=0.073  Score=39.73  Aligned_cols=33  Identities=24%  Similarity=0.356  Sum_probs=29.1

Q ss_pred             CceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           16 NKSIEVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        16 ~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ...+++-.++...|++|+|||.|++|++++=|+
T Consensus       567 G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~  599 (707)
T KOG0263|consen  567 GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG  599 (707)
T ss_pred             CcEEEEecCCCCceEEEEEcCCCceEeecccCC
Confidence            466888899999999999999999999998554

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=94.21  E-value=0.082  Score=35.99  Aligned_cols=33  Identities=30%  Similarity=0.492  Sum_probs=29.2

Q ss_pred             CceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           16 NKSIEVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        16 ~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ++.++--.|++--|.+|+|||...+|+.+|+|.
T Consensus       263 ~r~iq~f~phsadir~vrfsp~a~yllt~syd~  295 (350)
T KOG0641|consen  263 GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDM  295 (350)
T ss_pred             CceeeeeCCCccceeEEEeCCCceEEEEecccc
Confidence            466667789999999999999999999999996

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=94.18  E-value=0.089  Score=36.03  Aligned_cols=34  Identities=21%  Similarity=0.285  Sum_probs=28.8

Q ss_pred             CceEEe-cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           16 NKSIEV-SQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        16 ~~~~~l-~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+++. ...+-..|.+|+|||+|.+-|+||=|++
T Consensus       256 geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT  290 (334)
T KOG0278|consen  256 GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT  290 (334)
T ss_pred             CceeeecccCCCCceEEEEECCCCceeeccCCCce
Confidence            456666 4778899999999999999999998875

>PTZ00420 coronin; Provisional

Probab=94.10  E-value=0.12  Score=37.39  Aligned_cols=31  Identities=26%  Similarity=0.272  Sum_probs=25.8

Q ss_pred             EEecCCCCCCeEEEEEcCC-CCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPK-ANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~-~~~La~sSWD~~   49 (49)
                      +.....|.+.|.+|+|+|. +++|+++|.|++
T Consensus        67 v~~L~gH~~~V~~lafsP~~~~lLASgS~Dgt   98 (568)
T PTZ00420         67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLT   98 (568)
T ss_pred             EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCe
Confidence            4445678999999999997 789999998874

>PLN00181 protein SPA1-RELATED; Provisional

Probab=93.77  E-value=0.093  Score=37.97  Aligned_cols=25  Identities=12%  Similarity=0.311  Sum_probs=22.8

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           25 PSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        25 p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+.|.+|+|+|++++||+++.|++
T Consensus       482 ~~~~V~~i~fs~dg~~latgg~D~~  506 (793)
T PLN00181        482 SSNLVCAIGFDRDGEFFATAGVNKK  506 (793)
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCE
Confidence            6889999999999999999998863

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=93.52  E-value=0.067  Score=37.48  Aligned_cols=29  Identities=24%  Similarity=0.397  Sum_probs=24.8

Q ss_pred             EecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           20 EVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      .+...+.-.|++|+||++|+.|+++|-|.
T Consensus        59 r~lsaH~~pi~sl~WS~dgr~LltsS~D~   87 (405)
T KOG1273|consen   59 RMLSAHVRPITSLCWSRDGRKLLTSSRDW   87 (405)
T ss_pred             hhhhccccceeEEEecCCCCEeeeecCCc
Confidence            34567888999999999999999999775

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=93.42  E-value=0.15  Score=31.47  Aligned_cols=25  Identities=20%  Similarity=0.416  Sum_probs=20.2

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      -+...+..|+|||+|++|++++.++
T Consensus        98 ~~~~~~n~i~wsP~G~~l~~~g~~n  122 (194)
T PF08662_consen   98 FGTQPRNTISWSPDGRFLVLAGFGN  122 (194)
T ss_pred             ecCCCceEEEECCCCCEEEEEEccC
Confidence            3567788999999999999887553

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=93.36  E-value=0.099  Score=39.88  Aligned_cols=28  Identities=21%  Similarity=0.400  Sum_probs=25.2

Q ss_pred             cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           22 SQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..++++.|.+++|||+|+.|+++|-|++
T Consensus       572 f~gh~nritd~~FS~DgrWlisasmD~t  599 (910)
T KOG1539|consen  572 FWGHGNRITDMTFSPDGRWLISASMDST  599 (910)
T ss_pred             hhccccceeeeEeCCCCcEEEEeecCCc
Confidence            3679999999999999999999998874

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=93.25  E-value=0.08  Score=37.21  Aligned_cols=30  Identities=23%  Similarity=0.318  Sum_probs=26.0

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ..+...+.+.|++++||.+|+.||..|=|+
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr  108 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDR  108 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCc
Confidence            344578999999999999999999998776

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=93.17  E-value=0.097  Score=39.28  Aligned_cols=28  Identities=32%  Similarity=0.426  Sum_probs=24.4

Q ss_pred             cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           22 SQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ...|.=+|+.|+|||++++|++.|-|.+
T Consensus       568 L~~HsLTVT~l~FSpdg~~LLsvsRDRt  595 (764)
T KOG1063|consen  568 LEGHSLTVTRLAFSPDGRYLLSVSRDRT  595 (764)
T ss_pred             ecccceEEEEEEECCCCcEEEEeecCce
Confidence            3468889999999999999999998864

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=93.11  E-value=0.15  Score=35.85  Aligned_cols=32  Identities=19%  Similarity=0.400  Sum_probs=26.6

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      +.+...+.|.+.|.+|+|+|+|.+||.+|=-|
T Consensus       164 ~~v~~I~aH~~~lAalafs~~G~llATASeKG  195 (391)
T KOG2110|consen  164 QPVNTINAHKGPLAALAFSPDGTLLATASEKG  195 (391)
T ss_pred             eeeeEEEecCCceeEEEECCCCCEEEEeccCc
Confidence            44555678999999999999999999988544

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=92.81  E-value=0.2  Score=34.30  Aligned_cols=31  Identities=19%  Similarity=0.311  Sum_probs=27.3

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +....+|+--|-+++||++|++||..|-|++
T Consensus        98 v~~lEGHEnEVK~Vaws~sG~~LATCSRDKS  128 (312)
T KOG0645|consen   98 VATLEGHENEVKCVAWSASGNYLATCSRDKS  128 (312)
T ss_pred             EeeeeccccceeEEEEcCCCCEEEEeeCCCe
Confidence            4556789999999999999999999999874

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=92.80  E-value=0.12  Score=38.59  Aligned_cols=31  Identities=19%  Similarity=0.263  Sum_probs=26.5

Q ss_pred             eEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           18 SIEVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ..|+.+.+..+|=+++||++|++||+++=|+
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~  289 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDG  289 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCc
Confidence            3456678999999999999999999998665

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=92.72  E-value=0.27  Score=30.29  Aligned_cols=24  Identities=17%  Similarity=0.285  Sum_probs=18.6

Q ss_pred             cCCCCCCeEEEEEcCCCCeEEEEe
Q 045898           22 SQPPSDSVSSLCFSPKANILVATS   45 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~~La~sS   45 (49)
                      .......++.++|||+|++|++++
T Consensus       139 ~~~~~~~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen  139 STFEHSDATDVEWSPDGRYLATAT  162 (194)
T ss_pred             eccccCcEEEEEEcCCCCEEEEEE
Confidence            333445689999999999988765

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=92.66  E-value=0.15  Score=36.50  Aligned_cols=27  Identities=33%  Similarity=0.377  Sum_probs=24.3

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+...|=+++|||++..|++||=|.+
T Consensus       112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~T  138 (480)
T KOG0271|consen  112 AGHGEAVLSVQFSPTGSRLVTGSGDTT  138 (480)
T ss_pred             CCCCCcEEEEEecCCCceEEecCCCce
Confidence            578899999999999999999998764

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=92.60  E-value=0.13  Score=35.69  Aligned_cols=28  Identities=29%  Similarity=0.486  Sum_probs=24.1

Q ss_pred             cCCCCCCeEEEEEcCCCC--eEEEEeccCC
Q 045898           22 SQPPSDSVSSLCFSPKAN--ILVATSWDNQ   49 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~--~La~sSWD~~   49 (49)
                      ...|+..|..++|-+..+  .|+.||||++
T Consensus       109 v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKT  138 (347)
T KOG0647|consen  109 VAAHDAPVKTCHWVPGMNYQCLVTGSWDKT  138 (347)
T ss_pred             eeecccceeEEEEecCCCcceeEecccccc
Confidence            346899999999998764  9999999986

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=92.36  E-value=0.13  Score=37.79  Aligned_cols=31  Identities=23%  Similarity=0.458  Sum_probs=24.3

Q ss_pred             EEecCCCCC--CeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSD--SVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D--~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+...|.+  .|++|.||++|++||+=+.|.+
T Consensus       355 ~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t  387 (641)
T KOG0772|consen  355 MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT  387 (641)
T ss_pred             eEeeeccCCCCceeEEEeccccchhhhccCCCc
Confidence            444455554  9999999999999999887753

>PLN00181 protein SPA1-RELATED; Provisional

Probab=91.84  E-value=0.4  Score=34.78  Aligned_cols=33  Identities=18%  Similarity=0.200  Sum_probs=26.3

Q ss_pred             ceEEecCCCCCCeEEEEEcC-CCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSP-KANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp-~~~~La~sSWD~~   49 (49)
                      +.+.....+.+.|.+|+|+| ++++|+++|.|++
T Consensus       566 ~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~  599 (793)
T PLN00181        566 QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS  599 (793)
T ss_pred             eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCE
Confidence            33444567889999999997 6789999999873

>PTZ00420 coronin; Provisional

Probab=91.70  E-value=0.33  Score=35.13  Aligned_cols=28  Identities=14%  Similarity=0.310  Sum_probs=22.5

Q ss_pred             cCCCCCCeEEEEEcCCCC-eEEEEeccCC
Q 045898           22 SQPPSDSVSSLCFSPKAN-ILVATSWDNQ   49 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~-~La~sSWD~~   49 (49)
                      ...+.+.|.+|+|+|++. +|+++|+|++
T Consensus       121 L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt  149 (568)
T PTZ00420        121 LKGHKKKISIIDWNPMNYYIMCSSGFDSF  149 (568)
T ss_pred             eecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence            345778999999999986 5678899874

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=91.65  E-value=0.19  Score=35.20  Aligned_cols=29  Identities=31%  Similarity=0.572  Sum_probs=24.7

Q ss_pred             EecCCCCCCeEEEEEcCCC-CeEEEEeccC
Q 045898           20 EVSQPPSDSVSSLCFSPKA-NILVATSWDN   48 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp~~-~~La~sSWD~   48 (49)
                      .+...|.|-|+.|+|.|+. ++|++||=||
T Consensus       159 ~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG  188 (376)
T KOG1188|consen  159 QLNESHNDDVTQLRFHPSDPNLLLSGSVDG  188 (376)
T ss_pred             hhhhhccCcceeEEecCCCCCeEEeecccc
Confidence            3456799999999999985 8999999886

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=91.59  E-value=0.37  Score=35.51  Aligned_cols=30  Identities=23%  Similarity=0.436  Sum_probs=24.8

Q ss_pred             eEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           18 SIEVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      .+.+..- +..|+.++|+|+|.+||++|=|+
T Consensus       440 lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~  469 (626)
T KOG2106|consen  440 LVTIHTD-NEQLSVVRYSPDGAFLAVGSHDN  469 (626)
T ss_pred             eEEEEec-CCceEEEEEcCCCCEEEEecCCC
Confidence            3444444 89999999999999999999886

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=91.54  E-value=0.21  Score=35.72  Aligned_cols=28  Identities=21%  Similarity=0.396  Sum_probs=24.1

Q ss_pred             cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           22 SQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      -..+.--|..+.|||+++++|++|.|++
T Consensus       363 mtgHq~lVn~V~fSPd~r~IASaSFDkS  390 (480)
T KOG0271|consen  363 MTGHQALVNHVSFSPDGRYIASASFDKS  390 (480)
T ss_pred             hhchhhheeeEEECCCccEEEEeecccc
Confidence            3456678999999999999999999974

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=91.50  E-value=0.25  Score=35.84  Aligned_cols=27  Identities=22%  Similarity=0.314  Sum_probs=24.5

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..|...|++|+|-|.+.+|+++|-|+|
T Consensus       356 ~GH~g~V~alk~n~tg~LLaS~SdD~T  382 (524)
T KOG0273|consen  356 IGHHGEVNALKWNPTGSLLASCSDDGT  382 (524)
T ss_pred             ecccCceEEEEECCCCceEEEecCCCe
Confidence            348899999999999999999999975

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=91.39  E-value=0.086  Score=38.02  Aligned_cols=33  Identities=21%  Similarity=0.301  Sum_probs=27.6

Q ss_pred             CceEEecCCCCCCeEEEEEcC-CCCeEEEEeccC
Q 045898           16 NKSIEVSQPPSDSVSSLCFSP-KANILVATSWDN   48 (49)
Q Consensus        16 ~~~~~l~~~p~D~IS~l~Fsp-~~~~La~sSWD~   48 (49)
                      .+.+.....++++||+|+|.| .+.+|++++-|+
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~  237 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDG  237 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCc
Confidence            355666788999999999999 678999988776

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=91.29  E-value=0.31  Score=37.47  Aligned_cols=31  Identities=29%  Similarity=0.431  Sum_probs=27.1

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+..++...|.+|.|.|++++||+++.||+
T Consensus       131 ~~~lrgh~apVl~l~~~p~~~fLAvss~dG~  161 (933)
T KOG1274|consen  131 EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK  161 (933)
T ss_pred             heeecccCCceeeeeEcCCCCEEEEEecCce
Confidence            3445788999999999999999999999984

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=91.11  E-value=0.11  Score=35.67  Aligned_cols=32  Identities=28%  Similarity=0.450  Sum_probs=27.3

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      +.+.+..-+.++|.+|+|+|+..++|++|=|.
T Consensus       284 ~pLAVLkyHsagvn~vAfspd~~lmAaaskD~  315 (323)
T KOG0322|consen  284 NPLAVLKYHSAGVNAVAFSPDCELMAAASKDA  315 (323)
T ss_pred             CchhhhhhhhcceeEEEeCCCCchhhhccCCc
Confidence            44556677899999999999999999999775

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=90.80  E-value=0.35  Score=34.32  Aligned_cols=31  Identities=26%  Similarity=0.523  Sum_probs=25.7

Q ss_pred             eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+.....|++.|++|.|++ ...+.++|||-+
T Consensus       252 P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHT  282 (423)
T KOG0313|consen  252 PLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHT  282 (423)
T ss_pred             ceEEecccccceeeEEEcC-CCceEeecccce
Confidence            3556678999999999999 667888899964

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=90.15  E-value=0.44  Score=36.75  Aligned_cols=34  Identities=26%  Similarity=0.403  Sum_probs=29.9

Q ss_pred             CceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           16 NKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        16 ~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      -+.+.+...+.--|.+|+|+|++.+|++.|=|++
T Consensus       119 wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dns  152 (942)
T KOG0973|consen  119 WKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNS  152 (942)
T ss_pred             eeEEEEEecCCCccceeccCCCccEEEEecccce
Confidence            3677788889999999999999999999998864

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=89.91  E-value=0.25  Score=35.37  Aligned_cols=21  Identities=29%  Similarity=0.407  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCeEEEEeccCC
Q 045898           29 VSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        29 IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+++.|||++.++|+||-|+.
T Consensus       390 wtrvvfSpd~~YvaAGS~dgs  410 (459)
T KOG0288|consen  390 WTRVVFSPDGSYVAAGSADGS  410 (459)
T ss_pred             cceeEECCCCceeeeccCCCc
Confidence            899999999999999998873

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=89.64  E-value=0.41  Score=32.89  Aligned_cols=31  Identities=26%  Similarity=0.416  Sum_probs=26.8

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .....+|.--|+++.-++++++.+++|||++
T Consensus        56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~   86 (315)
T KOG0279|consen   56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGT   86 (315)
T ss_pred             eeeeeccceEecceEEccCCceEEeccccce
Confidence            4445668899999999999999999999984

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=89.54  E-value=0.45  Score=32.42  Aligned_cols=26  Identities=27%  Similarity=0.335  Sum_probs=22.5

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      --.+.|.+++||++++.++++|-|++
T Consensus       181 y~g~pit~vs~s~d~nc~La~~l~st  206 (307)
T KOG0316|consen  181 YFGHPITSVSFSKDGNCSLASSLDST  206 (307)
T ss_pred             hcCCcceeEEecCCCCEEEEeeccce
Confidence            35688999999999999999998864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=88.86  E-value=0.51  Score=36.07  Aligned_cols=28  Identities=29%  Similarity=0.518  Sum_probs=24.9

Q ss_pred             cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           22 SQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +..|-+.|.++++||+|+++|+|+=|++
T Consensus       346 QQgH~~~i~~l~YSpDgq~iaTG~eDgK  373 (893)
T KOG0291|consen  346 QQGHSDRITSLAYSPDGQLIATGAEDGK  373 (893)
T ss_pred             ccccccceeeEEECCCCcEEEeccCCCc
Confidence            3578899999999999999999998874

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=88.61  E-value=0.27  Score=34.93  Aligned_cols=31  Identities=26%  Similarity=0.443  Sum_probs=25.5

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+-..+...|-+|.|||.|+-++++|.|++
T Consensus       265 ~~v~~dhvsAV~dVdfsptG~EfvsgsyDks  295 (433)
T KOG0268|consen  265 LNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS  295 (433)
T ss_pred             chhhcccceeEEEeccCCCcchhccccccce
Confidence            3344556778999999999999999999985

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=88.45  E-value=0.63  Score=33.19  Aligned_cols=29  Identities=17%  Similarity=0.252  Sum_probs=24.4

Q ss_pred             EecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           20 EVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      .....++..|..|+|+|++++||+++=++
T Consensus        59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g   87 (434)
T KOG1009|consen   59 SSLSRHTRAVNVVRFSPDGELLASGGDGG   87 (434)
T ss_pred             ecccCCcceeEEEEEcCCcCeeeecCCCc
Confidence            34467889999999999999999987654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=88.40  E-value=0.4  Score=32.92  Aligned_cols=30  Identities=30%  Similarity=0.630  Sum_probs=25.2

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .++++.+   -+|+.++.-|++++||.+.||+.
T Consensus       245 ~e~~lkn---pGv~gvrIRpD~KIlATAGWD~R  274 (323)
T KOG0322|consen  245 KEITLKN---PGVSGVRIRPDGKILATAGWDHR  274 (323)
T ss_pred             ceEEecC---CCccceEEccCCcEEeecccCCc
Confidence            5666664   48999999999999999999973

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=87.94  E-value=1.2  Score=31.06  Aligned_cols=32  Identities=19%  Similarity=0.251  Sum_probs=24.3

Q ss_pred             ceEEecCCCC-CCeEEEEEcCCCCeEEEEeccC
Q 045898           17 KSIEVSQPPS-DSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        17 ~~~~l~~~p~-D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ...|+..+-. -.|-+|+|||++.+|||+|=-+
T Consensus       216 ~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg  248 (346)
T KOG2111|consen  216 LLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG  248 (346)
T ss_pred             EeeeeecCCchheEEEEEeCCCccEEEEEcCCC
Confidence            4455555543 5699999999999999988544

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=87.93  E-value=0.59  Score=33.35  Aligned_cols=30  Identities=17%  Similarity=0.308  Sum_probs=25.7

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ..+.+-+--.|++|+||++|..|+++|=|+
T Consensus       335 ~~v~nihy~~iTDiaws~dg~~l~vSS~DG  364 (434)
T KOG1009|consen  335 AVVDNIHYSAITDIAWSDDGSVLLVSSTDG  364 (434)
T ss_pred             EEEeeeeeeeecceeecCCCcEEEEeccCC
Confidence            445566778999999999999999999887

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=87.68  E-value=0.91  Score=33.48  Aligned_cols=32  Identities=25%  Similarity=0.376  Sum_probs=25.9

Q ss_pred             eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .++-..++..+|=+|.|||++..++..|=|++
T Consensus       227 ~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt  258 (603)
T KOG0318|consen  227 ELEDSDAHKGSIFALSWSPDSTQFLTVSADKT  258 (603)
T ss_pred             EecCCCCccccEEEEEECCCCceEEEecCCce
Confidence            34445678899999999999998988887763

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=87.58  E-value=0.49  Score=34.21  Aligned_cols=35  Identities=29%  Similarity=0.365  Sum_probs=29.6

Q ss_pred             CCceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           15 PNKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        15 ~~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      |.+...+...++|-|==+.||++|++||++|=|.+
T Consensus       213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~T  247 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDST  247 (519)
T ss_pred             CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCce
Confidence            34556677889999999999999999999997764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=87.54  E-value=0.8  Score=33.26  Aligned_cols=33  Identities=24%  Similarity=0.514  Sum_probs=27.9

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ++.....|-..+|++|.|.|...+|+++.-|++
T Consensus       204 kDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~  236 (514)
T KOG2055|consen  204 KDANAAHPSHGGITSVQFHPTAPLLLVAGLDGT  236 (514)
T ss_pred             cccccCCcCcCCceEEEecCCCceEEEecCCCc
Confidence            455556777899999999999999999998874

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=87.23  E-value=0.74  Score=31.45  Aligned_cols=26  Identities=19%  Similarity=0.284  Sum_probs=23.0

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      -+...|-+.+|||.+.+||.+|=|++
T Consensus        87 hhkgsiyc~~ws~~geliatgsndk~  112 (350)
T KOG0641|consen   87 HHKGSIYCTAWSPCGELIATGSNDKT  112 (350)
T ss_pred             ccCccEEEEEecCccCeEEecCCCce
Confidence            35689999999999999999998874

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=87.23  E-value=0.77  Score=32.64  Aligned_cols=27  Identities=22%  Similarity=0.385  Sum_probs=24.9

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+|.++|-+|.-.+++..++++|||++
T Consensus       190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~  216 (423)
T KOG0313|consen  190 RGHKRSVDSVSVDSSGTRFCSGSWDTM  216 (423)
T ss_pred             cccccceeEEEecCCCCeEEeecccce
Confidence            489999999999999999999999974

>PRK01742 tolB translocation protein TolB; Provisional

Probab=87.15  E-value=0.84  Score=30.89  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=21.2

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ...+.|..++|||+++.|+..|+++
T Consensus       201 ~~~~~v~~p~wSPDG~~la~~s~~~  225 (429)
T PRK01742        201 RSSQPLMSPAWSPDGSKLAYVSFEN  225 (429)
T ss_pred             cCCCccccceEcCCCCEEEEEEecC
Confidence            3457899999999999999988864

>KOG4328 consensus WD40 protein [Function unknown]

Probab=86.87  E-value=0.71  Score=33.42  Aligned_cols=31  Identities=32%  Similarity=0.502  Sum_probs=25.7

Q ss_pred             EEecCCCCCCeEEEEEcCCC-CeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKA-NILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~-~~La~sSWD~~   49 (49)
                      +-+-.++...|++|.|+|.. ..++++|.||+
T Consensus       227 v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  227 VYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             eEEeccCCccccceEecCCChhheeeeccCce
Confidence            55667888999999999975 57778899985

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=86.70  E-value=0.64  Score=34.91  Aligned_cols=23  Identities=22%  Similarity=0.603  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCeEEEEeccC
Q 045898           26 SDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        26 ~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      .|.|++++|+|+|+..++|+.+|
T Consensus       451 ~~lITAvcy~PdGk~avIGt~~G  473 (712)
T KOG0283|consen  451 RDLITAVCYSPDGKGAVIGTFNG  473 (712)
T ss_pred             hhhheeEEeccCCceEEEEEecc
Confidence            48999999999999999999876

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=86.57  E-value=0.61  Score=34.37  Aligned_cols=24  Identities=17%  Similarity=0.448  Sum_probs=22.4

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeccC
Q 045898           25 PSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        25 p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      |+-.|-+|+|||+..+||.+|-|.
T Consensus       529 HtakI~~~aWsP~n~~vATGSlDt  552 (603)
T KOG0318|consen  529 HTAKINCVAWSPNNKLVATGSLDT  552 (603)
T ss_pred             eeeeEEEEEeCCCceEEEeccccc
Confidence            778999999999999999999885

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=86.54  E-value=1.3  Score=30.50  Aligned_cols=29  Identities=14%  Similarity=0.351  Sum_probs=23.1

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEe
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATS   45 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sS   45 (49)
                      ..+.+..++..-...|+|||+|+.|+.+.
T Consensus       178 ~tf~i~~~~~~ew~~l~FS~dGK~iLlsT  206 (311)
T KOG1446|consen  178 TTFSITDNDEAEWTDLEFSPDGKSILLST  206 (311)
T ss_pred             eeEccCCCCccceeeeEEcCCCCEEEEEe
Confidence            45666667789999999999999777654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=86.41  E-value=0.94  Score=32.08  Aligned_cols=27  Identities=19%  Similarity=0.298  Sum_probs=24.0

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+...|+.++|+|-|++|++..=|++
T Consensus       331 ~ghdnwVr~~af~p~Gkyi~ScaDDkt  357 (406)
T KOG0295|consen  331 VGHDNWVRGVAFSPGGKYILSCADDKT  357 (406)
T ss_pred             ecccceeeeeEEcCCCeEEEEEecCCc
Confidence            578999999999999999999887764

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=86.18  E-value=0.95  Score=34.65  Aligned_cols=24  Identities=29%  Similarity=0.482  Sum_probs=20.8

Q ss_pred             CCCeEEEEEcCCCCeEEEEeccCC
Q 045898           26 SDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        26 ~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +|-|.++++||++++||++=-|++
T Consensus       508 ~ddvL~v~~Spdgk~LaVsLLdnT  531 (888)
T KOG0306|consen  508 EDDVLCVSVSPDGKLLAVSLLDNT  531 (888)
T ss_pred             cccEEEEEEcCCCcEEEEEeccCe
Confidence            588999999999999999866653

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=85.93  E-value=0.91  Score=32.23  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=26.9

Q ss_pred             eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      -+.-..++...|.+|+|+|++.+|+.+|-|.+
T Consensus       182 CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t  213 (481)
T KOG0300|consen  182 CLATYTGHTGSVNSIKFHNSGLLLLTASGDET  213 (481)
T ss_pred             ceeeecccccceeeEEeccccceEEEccCCcc
Confidence            34445689999999999999999999998864

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=85.90  E-value=0.52  Score=33.52  Aligned_cols=25  Identities=32%  Similarity=0.385  Sum_probs=20.9

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      .-..-+.+-+|||++++|++||=|+
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDG  235 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDG  235 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccc
Confidence            3446677899999999999999876

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=85.50  E-value=1.2  Score=31.48  Aligned_cols=26  Identities=15%  Similarity=0.349  Sum_probs=23.1

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ..++++|.+|+||+++++-+.+|-||
T Consensus       258 ~qht~ai~~V~Ys~t~~lYvTaSkDG  283 (430)
T KOG0640|consen  258 DQHTGAITQVRYSSTGSLYVTASKDG  283 (430)
T ss_pred             cccccceeEEEecCCccEEEEeccCC
Confidence            34779999999999999999999776

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=85.08  E-value=1  Score=33.87  Aligned_cols=28  Identities=29%  Similarity=0.395  Sum_probs=24.5

Q ss_pred             cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           22 SQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ...+++.|-+|.||.++..||+++=|++
T Consensus       615 l~~Ht~ti~SlsFS~dg~vLasgg~Dns  642 (707)
T KOG0263|consen  615 LKGHTGTIYSLSFSRDGNVLASGGADNS  642 (707)
T ss_pred             hhcccCceeEEEEecCCCEEEecCCCCe
Confidence            3567999999999999999999997763

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=84.68  E-value=0.9  Score=32.79  Aligned_cols=22  Identities=27%  Similarity=0.543  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCeEEEEeccC
Q 045898           27 DSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        27 D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      -.|++|+-.|..++||.|||++
T Consensus       381 ~Witsla~i~~sdL~asGS~~G  402 (479)
T KOG0299|consen  381 FWITSLAVIPGSDLLASGSWSG  402 (479)
T ss_pred             cceeeeEecccCceEEecCCCC
Confidence            3899999999999999999997

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=84.39  E-value=1.1  Score=32.47  Aligned_cols=25  Identities=32%  Similarity=0.461  Sum_probs=21.5

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEecc
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWD   47 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD   47 (49)
                      ..+.++|+-|.|||+.++|++.+-|
T Consensus       266 vgh~~~V~yi~wSPDdryLlaCg~~  290 (519)
T KOG0293|consen  266 VGHSQPVSYIMWSPDDRYLLACGFD  290 (519)
T ss_pred             ecccCceEEEEECCCCCeEEecCch
Confidence            5688999999999999988887654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=84.33  E-value=1.2  Score=30.86  Aligned_cols=34  Identities=12%  Similarity=0.195  Sum_probs=29.4

Q ss_pred             CCceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           15 PNKSIEVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        15 ~~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ....+++...+...|-.++|.|++..||+++-|.
T Consensus        36 l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr   69 (338)
T KOG0265|consen   36 LQAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDR   69 (338)
T ss_pred             ccchhhhcCCCcceEEEEEECCCCCeEeecCCcc
Confidence            3466777888999999999999999999998874

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=84.30  E-value=2.9  Score=24.74  Aligned_cols=32  Identities=41%  Similarity=0.589  Sum_probs=23.5

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEE-eccC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVAT-SWDN   48 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~s-SWD~   48 (49)
                      ..+.....+.+.|.+++|+|+++.++++ +.|+
T Consensus       189 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~  221 (466)
T COG2319         189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG  221 (466)
T ss_pred             ceEEeeccCCCceEEEEEcCCcceEEEEecCCC
Confidence            3455555689999999999998845554 7665

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=83.98  E-value=2.2  Score=21.47  Aligned_cols=18  Identities=28%  Similarity=0.456  Sum_probs=13.1

Q ss_pred             CCeEEEEEcCCC---CeEEEE
Q 045898           27 DSVSSLCFSPKA---NILVAT   44 (49)
Q Consensus        27 D~IS~l~Fsp~~---~~La~s   44 (49)
                      .+|.+++|||..   ++|+-+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~   21 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWA   21 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEE
Confidence            368999999853   577653

It contains a characteristic DLL sequence motif.

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=83.79  E-value=1.2  Score=31.38  Aligned_cols=30  Identities=37%  Similarity=0.443  Sum_probs=22.7

Q ss_pred             CceEEecCCCC-CCeEEEEEcCCCCeEEEEe
Q 045898           16 NKSIEVSQPPS-DSVSSLCFSPKANILVATS   45 (49)
Q Consensus        16 ~~~~~l~~~p~-D~IS~l~Fsp~~~~La~sS   45 (49)
                      .+.+|...+-. -.|-+|+|+|++++|+++|
T Consensus       207 ~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS  237 (391)
T KOG2110|consen  207 QKLYEFRRGTYPVSIYSLSFSPDSQFLAASS  237 (391)
T ss_pred             cEeeeeeCCceeeEEEEEEECCCCCeEEEec
Confidence            34555554433 6799999999999999987

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=83.23  E-value=1.3  Score=34.30  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=19.1

Q ss_pred             CCeEEEEEcCCCCeEEEEeccC
Q 045898           27 DSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        27 D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ..++.++|||+|++||++.=||
T Consensus       233 s~~~~~~wsPnG~YiAAs~~~g  254 (933)
T KOG1274|consen  233 SKFSDLQWSPNGKYIAASTLDG  254 (933)
T ss_pred             cceEEEEEcCCCcEEeeeccCC
Confidence            4499999999999999998665

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=83.14  E-value=1.7  Score=30.57  Aligned_cols=29  Identities=24%  Similarity=0.314  Sum_probs=24.3

Q ss_pred             ecCCCCCCeEEEEEcCCCC-eEEEEeccCC
Q 045898           21 VSQPPSDSVSSLCFSPKAN-ILVATSWDNQ   49 (49)
Q Consensus        21 l~~~p~D~IS~l~Fsp~~~-~La~sSWD~~   49 (49)
                      ...++.|.|-+|.|||... .|+.+|-|+.
T Consensus       183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~  212 (397)
T KOG4283|consen  183 TLSGHRDGVLAVEWSPSSEWVLATGSADGA  212 (397)
T ss_pred             eeccccCceEEEEeccCceeEEEecCCCce
Confidence            3468999999999999986 7788888863

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=83.12  E-value=2.3  Score=30.38  Aligned_cols=32  Identities=25%  Similarity=0.358  Sum_probs=23.5

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ..+.+..---.+||-|+|||+++.|.+++.|.
T Consensus       229 ~~~pL~~~glgg~slLkwSPdgd~lfaAt~da  260 (445)
T KOG2139|consen  229 QKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA  260 (445)
T ss_pred             CcccccccCCCceeeEEEcCCCCEEEEecccc
Confidence            34444423348999999999999888878775

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=82.67  E-value=1.5  Score=33.21  Aligned_cols=30  Identities=23%  Similarity=0.371  Sum_probs=25.4

Q ss_pred             EecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           20 EVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      -+..++.|+|.+|.|.|.|.+|++.|=|.|
T Consensus       355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQT  384 (764)
T KOG1063|consen  355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQT  384 (764)
T ss_pred             cccccccccceeeeecCCCCEEEEeccccc
Confidence            345678999999999999999999887753

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=82.61  E-value=0.69  Score=32.98  Aligned_cols=25  Identities=28%  Similarity=0.468  Sum_probs=22.2

Q ss_pred             CCCCeEEEEEcCCC-CeEEEEeccCC
Q 045898           25 PSDSVSSLCFSPKA-NILVATSWDNQ   49 (49)
Q Consensus        25 p~D~IS~l~Fsp~~-~~La~sSWD~~   49 (49)
                      ++++|-+|+|||+- ..|+++|.|++
T Consensus       256 H~~SVEDLqWSptE~~vfaScS~Dgs  281 (440)
T KOG0302|consen  256 HTKSVEDLQWSPTEDGVFASCSCDGS  281 (440)
T ss_pred             cccchhhhccCCccCceEEeeecCce
Confidence            78999999999986 68899999874

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=82.32  E-value=1.4  Score=31.34  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=18.9

Q ss_pred             CCeEEEEEcCCCCeEEEEeccC
Q 045898           27 DSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        27 D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      =+|-.+.|||-+++|++||.|+
T Consensus       211 lG~k~v~wsP~~qflavGsyD~  232 (447)
T KOG4497|consen  211 LGLKFVEWSPCNQFLAVGSYDQ  232 (447)
T ss_pred             cceeEEEeccccceEEeeccch
Confidence            5677889999999999999985

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=82.32  E-value=1.6  Score=33.43  Aligned_cols=32  Identities=13%  Similarity=0.179  Sum_probs=26.0

Q ss_pred             eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ++.-...++|.|=.|+|||+|+++|.-+=|++
T Consensus       712 ~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~  743 (1012)
T KOG1445|consen  712 LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT  743 (1012)
T ss_pred             hhheeccCcCceeEEEECCCCcceeeeecCce
Confidence            33334689999999999999999998777763

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=82.18  E-value=2.8  Score=28.85  Aligned_cols=34  Identities=29%  Similarity=0.396  Sum_probs=30.2

Q ss_pred             CceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           16 NKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        16 ~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ++-++.-.+|.+.|.+|+-+|-.+.++++|-|++
T Consensus        90 NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~t  123 (311)
T KOG1446|consen   90 NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKT  123 (311)
T ss_pred             CceEEEcCCCCceEEEEEecCCCCeEEecccCCe
Confidence            5667777999999999999999999999999864

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=81.81  E-value=1.2  Score=31.20  Aligned_cols=29  Identities=31%  Similarity=0.486  Sum_probs=25.7

Q ss_pred             ecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           21 VSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        21 l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +..|...+|.+|.|.|+.-+|++||-|++
T Consensus       141 ikkPirStv~sldWhpnnVLlaaGs~D~k  169 (361)
T KOG1523|consen  141 IKKPIRSTVTSLDWHPNNVLLAAGSTDGK  169 (361)
T ss_pred             hCCccccceeeeeccCCcceecccccCcc
Confidence            45778899999999999999999998863

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=81.72  E-value=1.7  Score=33.03  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=28.4

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .-.-+..+|+-+|=+|+|||..++||.+|=|+|
T Consensus       496 ~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T  528 (775)
T KOG0319|consen  496 RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT  528 (775)
T ss_pred             eEEEEeeCCccceEEEEeccccceeEeccCCce
Confidence            344556889999999999999999999998875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.94  E-value=0.72  Score=31.59  Aligned_cols=26  Identities=27%  Similarity=0.422  Sum_probs=22.8

Q ss_pred             cCCCCCCeEEEEEcCCC-CeEEEEecc
Q 045898           22 SQPPSDSVSSLCFSPKA-NILVATSWD   47 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~-~~La~sSWD   47 (49)
                      .+.+.=.|.+|+|||.. .+||++|.|
T Consensus       230 L~gh~~AVRkvk~Sph~~~lLaSasYD  256 (311)
T KOG0277|consen  230 LNGHGLAVRKVKFSPHHASLLASASYD  256 (311)
T ss_pred             ecCCceEEEEEecCcchhhHhhhcccc
Confidence            37889999999999986 789998887

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.80  E-value=2  Score=30.05  Aligned_cols=26  Identities=15%  Similarity=0.451  Sum_probs=21.3

Q ss_pred             CCCCCCeEEEEEcCCC----CeEEEEeccC
Q 045898           23 QPPSDSVSSLCFSPKA----NILVATSWDN   48 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~----~~La~sSWD~   48 (49)
                      ..++|.|.+|+|+|+-    .+||+++=||
T Consensus       220 ~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  220 PDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             CCCCCcceeeeeccccCCceeeEEEeecCc
Confidence            3677999999999983    5889888764

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=80.71  E-value=1.3  Score=31.33  Aligned_cols=28  Identities=18%  Similarity=0.296  Sum_probs=22.4

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEE
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVAT   44 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~s   44 (49)
                      ..-++..-+...|++|.|+|+|++++..
T Consensus       364 ~~~~~e~~h~~~Is~is~~~~g~~~atc  391 (420)
T KOG2096|consen  364 DYPELEDIHSTTISSISYSSDGKYIATC  391 (420)
T ss_pred             cchhHHHhhcCceeeEEecCCCcEEeee
Confidence            3345567788999999999999988763

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=80.58  E-value=1.7  Score=30.90  Aligned_cols=23  Identities=30%  Similarity=0.622  Sum_probs=17.9

Q ss_pred             CCCCeEEEEEcCCCC-eEEEEecc
Q 045898           25 PSDSVSSLCFSPKAN-ILVATSWD   47 (49)
Q Consensus        25 p~D~IS~l~Fsp~~~-~La~sSWD   47 (49)
                      -.+++|+++|||+|+ +|..++.|
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~  113 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFD  113 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecce
Confidence            458999999999995 66666554

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=80.58  E-value=3.2  Score=18.94  Aligned_cols=18  Identities=28%  Similarity=0.316  Sum_probs=13.4

Q ss_pred             CeEEEEEcCCCCeEEEEe
Q 045898           28 SVSSLCFSPKANILVATS   45 (49)
Q Consensus        28 ~IS~l~Fsp~~~~La~sS   45 (49)
                      ......|||+++.|+-+|
T Consensus        10 ~~~~p~~SpDGk~i~f~s   27 (39)
T PF07676_consen   10 DDGSPAWSPDGKYIYFTS   27 (39)
T ss_dssp             SEEEEEE-TTSSEEEEEE
T ss_pred             cccCEEEecCCCEEEEEe
Confidence            566789999999887654

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=80.33  E-value=1.2  Score=31.50  Aligned_cols=31  Identities=29%  Similarity=0.351  Sum_probs=27.0

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.....|.-.||+++|-|.++++++.|-|++
T Consensus       186 ~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t  216 (406)
T KOG0295|consen  186 IKSLIGHEHGVSSVFFLPLGDHILSCSRDNT  216 (406)
T ss_pred             HHHhcCcccceeeEEEEecCCeeeecccccc
Confidence            4455789999999999999999999998864

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=80.17  E-value=2  Score=33.25  Aligned_cols=26  Identities=8%  Similarity=0.266  Sum_probs=21.7

Q ss_pred             EecCCCCCCeEEEEEcCCCCeEEEEe
Q 045898           20 EVSQPPSDSVSSLCFSPKANILVATS   45 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp~~~~La~sS   45 (49)
                      -|.+...-.+++|+|||+|+++|+|-
T Consensus        72 hlvnssRk~~t~vAfS~~GryvatGE   97 (1080)
T KOG1408|consen   72 HLVNSSRKPLTCVAFSQNGRYVATGE   97 (1080)
T ss_pred             heecccCcceeEEEEcCCCcEEEecc
Confidence            34456677999999999999999975

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=80.02  E-value=1.7  Score=31.44  Aligned_cols=27  Identities=30%  Similarity=0.389  Sum_probs=23.9

Q ss_pred             CCCCCCeEEEEEcCCCC-eEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKAN-ILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~-~La~sSWD~~   49 (49)
                      ..++|-|.+..|+|..+ ++++||+|++
T Consensus       150 ~~htDYVR~g~~~~~~~hivvtGsYDg~  177 (487)
T KOG0310|consen  150 SGHTDYVRCGDISPANDHIVVTGSYDGK  177 (487)
T ss_pred             cCCcceeEeeccccCCCeEEEecCCCce
Confidence            58999999999999864 8899999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	49
3mmy_A	368	Structural And Functional Analysis Of The Interacti		2e-04

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 4  FGAAAVATNQNPNKSIEVSQPPSDSVSSLCFSP---KANILVATSWDN 48
          FG+A    N NP K IEV+  P DS+  L FSP     N L+A SW N
Sbjct: 18 FGSATT-DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	49
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.05
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.81
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.72
2pm7_B	297	Protein transport protein SEC13, protein transport	97.7
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.6
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.52
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.49
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.43
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.42
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.41
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.4
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	97.36
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.35
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.34
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.33
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.33
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.3
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.28
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.27
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.21
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.18
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.17
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.17
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.16
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.14
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.13
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	97.13
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.12
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.11
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	97.1
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.1
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.09
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.09
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.06
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.05
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	96.96
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	96.95
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	96.91
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	96.9
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	96.9
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	96.89
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	96.89
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	96.88
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	96.85
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	96.83
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	96.82
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	96.79
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	96.77
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	96.75
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	96.74
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	96.69
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	96.67
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	96.67
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	96.64
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	96.61
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.61
2pm7_B	297	Protein transport protein SEC13, protein transport	96.6
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	96.58
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.56
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	96.53
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	96.53
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	96.49
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	96.48
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.47
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	96.45
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	96.44
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	96.42
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.41
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	96.36
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	96.33
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.29
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	96.27
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.25
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.25
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	96.23
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	96.21
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	96.15
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.13
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.1
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	96.07
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	96.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	95.99
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	95.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	95.97
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	95.96
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	95.95
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	95.95
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	95.84
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	95.8
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	95.76
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	95.75
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	95.74
3jro_A	753	Fusion protein of protein transport protein SEC13	95.73
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	95.72
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	95.7
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	95.65
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	95.65
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	95.64
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	95.62
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	95.6
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	95.58
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	95.55
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	95.51
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	95.5
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	95.5
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	95.49
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	95.46
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	95.37
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	95.33
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	95.16
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	95.01
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	94.95
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.86
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	94.67
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	94.66
3jro_A	753	Fusion protein of protein transport protein SEC13	94.55
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.53
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	94.34
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	93.86
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	93.7
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	93.11
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	92.79
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	91.84
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	91.44
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	91.07
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	91.05
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	90.89
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	90.36
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	90.17
1k32_A	1045	Tricorn protease; protein degradation, substrate g	90.12
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	90.12
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	89.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	89.34
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	88.63
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	88.48
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	88.19
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	88.06
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	87.98
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	87.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	87.83
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	87.74
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	87.72
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	87.6
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	87.57
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	87.4
1k32_A	1045	Tricorn protease; protein degradation, substrate g	86.29
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	85.85
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	85.81
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	85.09
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	85.03
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	84.72
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	84.47
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	84.39
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	84.38
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	83.05
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	83.05
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	82.7
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	81.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	81.69
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	81.27
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	80.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	80.24

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.05  E-value=4.2e-06  Score=52.68  Aligned_cols=30  Identities=20%  Similarity=0.242  Sum_probs=27.1

Q ss_pred             EecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           20 EVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ++...|.+.|.+|+|||++++||++|+|++
T Consensus       306 ~~~~gH~~~V~~v~fSpdg~~laS~S~D~t  335 (365)
T 4h5i_A          306 IFKQAHSFAITEVTISPDSTYVASVSAANT  335 (365)
T ss_dssp             EETTSSSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             EecCcccCCEEEEEECCCCCEEEEEeCCCe
Confidence            356789999999999999999999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.81  E-value=2.7e-05  Score=45.93  Aligned_cols=33  Identities=18%  Similarity=0.250  Sum_probs=28.0

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+.....|.+.|.+|+|+|++++|+++|+|++
T Consensus       275 ~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~  307 (318)
T 4ggc_A          275 AKVAELKGHTSRVLSLTMSPDGATVASAAADET  307 (318)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence            344445678999999999999999999999974

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.72  E-value=2.8e-05  Score=46.42  Aligned_cols=32  Identities=31%  Similarity=0.691  Sum_probs=29.4

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      +.+++..+|.+.|.+|+|+|++++|++++.|+
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~   33 (342)
T 1yfq_A            2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDG   33 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred             cceecccCCCCcEEEEEEcCCCCEEEEEcCCC
Confidence            46788889999999999999999999999987

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.70  E-value=5e-05  Score=45.99  Aligned_cols=30  Identities=7%  Similarity=0.111  Sum_probs=26.9

Q ss_pred             EecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           20 EVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+...+.+.|.+++|+|++++||++|+|++
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~   32 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKT   32 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCE
Confidence            456788999999999999999999999974

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.60  E-value=0.00011  Score=43.69  Aligned_cols=28  Identities=14%  Similarity=0.342  Sum_probs=25.1

Q ss_pred             cCCCCCCeEEEEEcCC-CCeEEEEeccCC
Q 045898           22 SQPPSDSVSSLCFSPK-ANILVATSWDNQ   49 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~-~~~La~sSWD~~   49 (49)
                      ...|++.|.+|+|+|+ +++|+++|.|++
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~   62 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKT   62 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSC
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCe
Confidence            4689999999999998 689999999974

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.52  E-value=0.00012  Score=45.64  Aligned_cols=32  Identities=25%  Similarity=0.468  Sum_probs=27.5

Q ss_pred             eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+.....+.+.|++|+|+|++++|+++|+|++
T Consensus       318 ~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~  349 (354)
T 2pbi_B          318 RVSILFGHENRVSTLRVSPDGTAFCSGSWDHT  349 (354)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred             eEEEEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence            34455678999999999999999999999974

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.49  E-value=8.4e-05  Score=46.50  Aligned_cols=27  Identities=26%  Similarity=0.486  Sum_probs=24.9

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+.+.|++|+|+|++++|+++|||++
T Consensus       341 ~~h~~~v~~l~~s~dg~~l~sgs~D~~  367 (380)
T 3iz6_a          341 NSHEGRISCLGLSSDGSALCTGSWDKN  367 (380)
T ss_dssp             SSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred             CCCCCceEEEEECCCCCEEEEeeCCCC
Confidence            568899999999999999999999984

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.43  E-value=0.00017  Score=45.37  Aligned_cols=33  Identities=18%  Similarity=0.250  Sum_probs=27.8

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+.....|.+.|.+|+|+|++++|+++|+|++
T Consensus       355 ~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~t  387 (420)
T 4gga_A          355 AKVAELKGHTSRVLSLTMSPDGATVASAAADET  387 (420)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence            334445678999999999999999999999974

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.42  E-value=7.9e-05  Score=45.56  Aligned_cols=29  Identities=17%  Similarity=0.121  Sum_probs=21.8

Q ss_pred             ecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           21 VSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        21 l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +...|.+.|.+|+|+|++++||++|+|++
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~   36 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRS   36 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCe
Confidence            34578999999999999999999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.41  E-value=0.00011  Score=44.66  Aligned_cols=29  Identities=21%  Similarity=0.331  Sum_probs=25.5

Q ss_pred             ecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           21 VSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        21 l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ....+.+.|.+|+|+|++++|+++++|++
T Consensus         8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~   36 (304)
T 2ynn_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGR   36 (304)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSE
T ss_pred             eecCCCCceEEEEECCCCCEEEEEcCCCc
Confidence            34578899999999999999999999973

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.40  E-value=0.00026  Score=43.74  Aligned_cols=29  Identities=28%  Similarity=0.463  Sum_probs=25.8

Q ss_pred             ecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           21 VSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        21 l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +...+.+.|.+|+|+|++++|+++|+|++
T Consensus        56 ~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A           56 LSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             ECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            34678899999999999999999999974

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=97.36  E-value=0.00023  Score=45.61  Aligned_cols=27  Identities=30%  Similarity=0.428  Sum_probs=24.7

Q ss_pred             cCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           22 SQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ...|++.|++|+|||++++||+++-|+
T Consensus        12 L~GH~~~V~~~a~spdg~~las~~~d~   38 (577)
T 2ymu_A           12 LEAHSSSVRGVAFSPDGQTIASASDDK   38 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             ECCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            468999999999999999999998776

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.35  E-value=0.00034  Score=41.60  Aligned_cols=35  Identities=54%  Similarity=0.937  Sum_probs=30.8

Q ss_pred             CCCceEEecCCCCCCeEEEEEcCC---CCeEEEEeccC
Q 045898           14 NPNKSIEVSQPPSDSVSSLCFSPK---ANILVATSWDN   48 (49)
Q Consensus        14 ~~~~~~~l~~~p~D~IS~l~Fsp~---~~~La~sSWD~   48 (49)
                      .+.+.+++...|.+.|.+|+|+|+   +++|++++.|+
T Consensus        27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg   64 (368)
T 3mmy_A           27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN   64 (368)
T ss_dssp             CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTS
T ss_pred             CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCC
Confidence            345788889999999999999999   59999999886

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.34  E-value=0.0003  Score=43.28  Aligned_cols=32  Identities=22%  Similarity=0.278  Sum_probs=27.5

Q ss_pred             eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+.....+.+.|.+|+|+|++++|+++|+|++
T Consensus       304 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~  335 (340)
T 1got_B          304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             EeeEeecCCCcEEEEEEcCCCCEEEEEcCCcc
Confidence            34445678999999999999999999999984

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.33  E-value=0.00024  Score=44.37  Aligned_cols=32  Identities=31%  Similarity=0.352  Sum_probs=27.8

Q ss_pred             eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .......+.+.|.+|+|+|++++|+++|+|++
T Consensus        58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~   89 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGR   89 (380)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred             EeecccccccEEEEEEEcCCCCEEEEEeCCCe
Confidence            34556789999999999999999999999974

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.33  E-value=0.00025  Score=44.63  Aligned_cols=27  Identities=19%  Similarity=0.363  Sum_probs=24.3

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+.+.|++|+|+|++++||+++.|++
T Consensus       144 ~~~~~~V~sv~fspdg~~lasgs~Dg~  170 (420)
T 4gga_A          144 EQPGEYISSVAWIKEGNYLAVGTSSAE  170 (420)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCe
Confidence            457789999999999999999999974

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.30  E-value=0.00033  Score=43.61  Aligned_cols=31  Identities=10%  Similarity=0.189  Sum_probs=27.3

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.....+.+.|.+|+|+|++++||++|.|++
T Consensus       188 ~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~  218 (355)
T 3vu4_A          188 GVLIKAHTNPIKMVRLNRKSDMVATCSQDGT  218 (355)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTCS
T ss_pred             cEEEEccCCceEEEEECCCCCEEEEEeCCCC
Confidence            4455688999999999999999999999984

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.28  E-value=0.00028  Score=41.21  Aligned_cols=29  Identities=14%  Similarity=0.126  Sum_probs=26.0

Q ss_pred             EecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           20 EVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      .+...+.+.|.+|+|+|++++|++++.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg   33 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQ   33 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCC
Confidence            44568899999999999999999999987

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.27  E-value=0.00016  Score=45.21  Aligned_cols=22  Identities=14%  Similarity=0.224  Sum_probs=20.2

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEe
Q 045898           24 PPSDSVSSLCFSPKANILVATS   45 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sS   45 (49)
                      .+...|.+|+|||+|++||++|
T Consensus        40 ~H~~~V~~v~fSpDG~~las~s   61 (357)
T 4g56_B           40 CMEVQIGAVRYRRDGALLLAAS   61 (357)
T ss_dssp             CCCSEEEEEEECSSSCEEEEEE
T ss_pred             cccCCEEEEEECCCCCEEEEEc
Confidence            4678999999999999999998

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.21  E-value=0.00047  Score=42.31  Aligned_cols=31  Identities=16%  Similarity=0.283  Sum_probs=23.1

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.....+.+.|.+|+|+|++++|+++|.|++
T Consensus       100 ~~~~~~h~~~V~~v~~sp~g~~las~s~D~~  130 (330)
T 2hes_X          100 LAIIEGHENEVKGVAWSNDGYYLATCSRDKS  130 (330)
T ss_dssp             EEEEC----CEEEEEECTTSCEEEEEETTSC
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEEEeCCCE
Confidence            3345678899999999999999999999974

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.18  E-value=0.0004  Score=40.85  Aligned_cols=27  Identities=19%  Similarity=0.363  Sum_probs=24.2

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+.+.|.+|+|+|++++|+++|.|++
T Consensus        64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~   90 (318)
T 4ggc_A           64 EQPGEYISSVAWIKEGNYLAVGTSSAE   90 (318)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSE
T ss_pred             cCCCCeEEEEEECCCCCEEEEEECCCc
Confidence            467789999999999999999999973

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.17  E-value=0.0004  Score=46.21  Aligned_cols=32  Identities=13%  Similarity=0.070  Sum_probs=27.2

Q ss_pred             eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .......+.+.|.+|+|||++++||+++.|++
T Consensus        51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~   82 (611)
T 1nr0_A           51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN   82 (611)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             cCeEecCCCCceEEEEECCCCcEEEEEeCCCC
Confidence            34455678999999999999999999999873

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.17  E-value=0.0007  Score=39.46  Aligned_cols=33  Identities=15%  Similarity=0.187  Sum_probs=27.5

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+.....+.+.|.+|+|+|++++|++++.|+.
T Consensus       297 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~  329 (351)
T 3f3f_A          297 ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGK  329 (351)
T ss_dssp             EEEEEECTTSSCEEEEEECSSSCCEEEEETTSC
T ss_pred             cEEEEEecccccEEEEEEcCCCCEEEEecCCCc
Confidence            334445678899999999999999999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.16  E-value=0.00079  Score=40.75  Aligned_cols=32  Identities=16%  Similarity=0.169  Sum_probs=27.1

Q ss_pred             eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+.....+.+.|.+|+|+|++++|+++|+|++
T Consensus        89 ~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~  120 (304)
T 2ynn_A           89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT  120 (304)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred             EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCe
Confidence            34444578899999999999999999999974

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.14  E-value=0.00052  Score=42.85  Aligned_cols=27  Identities=22%  Similarity=0.538  Sum_probs=24.0

Q ss_pred             CCCCCCeEEEEEcC-CCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSP-KANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp-~~~~La~sSWD~~   49 (49)
                      ..+.+.|.+|+|+| ++++|+++|+|++
T Consensus       308 ~~H~~~V~~vafsP~d~~~l~s~s~Dg~  335 (357)
T 4g56_B          308 LSHRDFVTGVAWSPLDHSKFTTVGWDHK  335 (357)
T ss_dssp             CCCSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEcCCCe
Confidence            36889999999999 6899999999984

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.13  E-value=0.00038  Score=41.66  Aligned_cols=31  Identities=10%  Similarity=0.150  Sum_probs=26.5

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+...+.+.|.+|+|+|++++|++++.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~   34 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKT   34 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSC
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCc
Confidence            3456678999999999999999999999874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=97.13  E-value=0.00067  Score=42.56  Aligned_cols=27  Identities=22%  Similarity=0.214  Sum_probs=24.1

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+...|.+|+|||++++||++|.|++
T Consensus       266 ~~~~~~V~~~~~Spdg~~lasgs~D~~  292 (365)
T 4h5i_A          266 TNRFKGITSMDVDMKGELAVLASNDNS  292 (365)
T ss_dssp             ESSCSCEEEEEECTTSCEEEEEETTSC
T ss_pred             cCCCCCeEeEEECCCCCceEEEcCCCE
Confidence            456789999999999999999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.12  E-value=0.00054  Score=43.08  Aligned_cols=27  Identities=22%  Similarity=0.090  Sum_probs=24.6

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+++.|.+|+|+|++++|++++.|++
T Consensus       124 ~~H~~~V~~v~~spdg~~l~sgs~d~~  150 (344)
T 4gqb_B          124 YEHDDIVSTVSVLSSGTQAVSGSKDIC  150 (344)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cCCCCCEEEEEECCCCCEEEEEeCCCe
Confidence            368899999999999999999999974

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.11  E-value=0.00084  Score=41.19  Aligned_cols=31  Identities=29%  Similarity=0.514  Sum_probs=26.8

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.....+.+.|.+|+|+|++++|+++|+|++
T Consensus       146 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~  176 (330)
T 2hes_X          146 ISVLQEHSQDVKHVIWHPSEALLASSSYDDT  176 (330)
T ss_dssp             EEEECCCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred             EEEeccCCCceEEEEECCCCCEEEEEcCCCe
Confidence            4445678899999999999999999999974

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=97.10  E-value=0.00079  Score=43.12  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=27.7

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+.....+.+.|.+|+|+|++++|++++.|++
T Consensus       540 ~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~  572 (577)
T 2ymu_A          540 QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKT  572 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence            334445678999999999999999999999974

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.10  E-value=0.00085  Score=41.38  Aligned_cols=31  Identities=23%  Similarity=0.437  Sum_probs=26.8

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.....+.+.|.+|+|+|++++|+++|+|++
T Consensus        98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~  128 (345)
T 3fm0_A           98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKS  128 (345)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEccCCCCCceEEEEeCCCCEEEEEECCCe
Confidence            3445678899999999999999999999974

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.09  E-value=0.0007  Score=40.15  Aligned_cols=27  Identities=26%  Similarity=0.292  Sum_probs=23.6

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+.+.|.+|+|+|++++|++++.|++
T Consensus       303 ~~h~~~v~~l~~s~dg~~l~sgs~Dg~  329 (340)
T 4aow_A          303 KAEPPQCTSLAWSADGQTLFAGYTDNL  329 (340)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEETTSC
T ss_pred             cCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence            356789999999999999999999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.09  E-value=0.00089  Score=41.10  Aligned_cols=33  Identities=9%  Similarity=0.232  Sum_probs=28.1

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.......+.+.|.+|+|+|++++|+++|.|++
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~   78 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGK   78 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCc
Confidence            444556789999999999999999999999973

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.06  E-value=0.0007  Score=42.12  Aligned_cols=33  Identities=15%  Similarity=0.195  Sum_probs=28.1

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.......+.+.|.+|+|+|++++|+++|.|++
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~   87 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGK   87 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCe
Confidence            344555689999999999999999999999873

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.05  E-value=0.0012  Score=39.88  Aligned_cols=34  Identities=18%  Similarity=0.313  Sum_probs=29.4

Q ss_pred             CceEEecCCCCCCeEEEEEcC-CCCeEEEEeccCC
Q 045898           16 NKSIEVSQPPSDSVSSLCFSP-KANILVATSWDNQ   49 (49)
Q Consensus        16 ~~~~~l~~~p~D~IS~l~Fsp-~~~~La~sSWD~~   49 (49)
                      .+..++...+.+.|.+|+|+| ++++|++++.|++
T Consensus        33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~   67 (408)
T 4a11_B           33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGV   67 (408)
T ss_dssp             CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSC
T ss_pred             CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCe
Confidence            355677788999999999999 9999999998874

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=96.96  E-value=0.00087  Score=40.92  Aligned_cols=29  Identities=17%  Similarity=0.299  Sum_probs=25.7

Q ss_pred             ecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           21 VSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        21 l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ....+.+.|.+++|+|++++|+++|+|++
T Consensus        60 ~~~~h~~~v~~~~~s~dg~~l~s~s~D~~   88 (319)
T 3frx_A           60 SFKGHSHIVQDCTLTADGAYALSASWDKT   88 (319)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence            34578999999999999999999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=96.95  E-value=0.0016  Score=40.91  Aligned_cols=29  Identities=34%  Similarity=0.559  Sum_probs=24.3

Q ss_pred             ecCCCCCCeEEEEEcCCCC-eEEEEeccCC
Q 045898           21 VSQPPSDSVSSLCFSPKAN-ILVATSWDNQ   49 (49)
Q Consensus        21 l~~~p~D~IS~l~Fsp~~~-~La~sSWD~~   49 (49)
                      ....+.+.|.+|+|+|+++ +|+++|||++
T Consensus       294 ~~~~H~~~V~~v~~sp~~~~llas~s~D~~  323 (344)
T 4gqb_B          294 RSQAHRDFVRDATWSPLNHSLLTTVGWDHQ  323 (344)
T ss_dssp             EECCCSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             EEcCCCCCEEEEEEeCCCCeEEEEEcCCCe
Confidence            3467899999999999985 6778899985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=96.91  E-value=0.0016  Score=41.21  Aligned_cols=31  Identities=23%  Similarity=0.283  Sum_probs=26.9

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ......+.+.|.+|+|+|++++|+++|+|++
T Consensus       143 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~  173 (410)
T 1vyh_C          143 ERTLKGHTDSVQDISFDHSGKLLASCSADMT  173 (410)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEeccCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            3445678999999999999999999999974

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=96.90  E-value=0.0015  Score=43.49  Aligned_cols=30  Identities=17%  Similarity=0.274  Sum_probs=26.3

Q ss_pred             EecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           20 EVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .....+.+.|.+|+|+|++++||++|.|++
T Consensus       184 ~~l~~H~~~V~~v~fspdg~~las~s~D~~  213 (611)
T 1nr0_A          184 STFGEHTKFVHSVRYNPDGSLFASTGGDGT  213 (611)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eeeccccCceEEEEECCCCCEEEEEECCCc
Confidence            344678899999999999999999999974

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=96.90  E-value=0.00088  Score=44.77  Aligned_cols=33  Identities=24%  Similarity=0.219  Sum_probs=24.1

Q ss_pred             ceEEecCCCCCC-eEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDS-VSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~-IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+....++.+. ++.|+|||++++|+++|+|++
T Consensus       316 k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T  349 (356)
T 2w18_A          316 QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN  349 (356)
T ss_dssp             SEEEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred             cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence            334444566665 567999999999999999985

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=96.89  E-value=0.00058  Score=42.19  Aligned_cols=25  Identities=16%  Similarity=0.290  Sum_probs=22.8

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      .+.|.|++|+|+|++++||+++.|+
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg   50 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGG   50 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTS
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCC
Confidence            3569999999999999999999987

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=96.89  E-value=0.0013  Score=39.25  Aligned_cols=28  Identities=32%  Similarity=0.374  Sum_probs=25.1

Q ss_pred             cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           22 SQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ...+.+.|.+|+|+|++++|++++.|++
T Consensus        19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~   46 (312)
T 4ery_A           19 LAGHTKAVSSVKFSPNGEWLASSSADKL   46 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EcccCCcEEEEEECCCCCEEEEeeCCCe
Confidence            3578999999999999999999999874

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=96.88  E-value=0.0014  Score=40.13  Aligned_cols=30  Identities=23%  Similarity=0.402  Sum_probs=26.2

Q ss_pred             EecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           20 EVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .....+.+.|.+|+|+|++++|+++|+|++
T Consensus        70 ~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~   99 (343)
T 2xzm_R           70 KALTGHNHFVSDLALSQENCFAISSSWDKT   99 (343)
T ss_dssp             EEECCCSSCEEEEEECSSTTEEEEEETTSE
T ss_pred             chhccCCCceEEEEECCCCCEEEEEcCCCc
Confidence            345678899999999999999999999973

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=96.85  E-value=0.0018  Score=38.41  Aligned_cols=31  Identities=16%  Similarity=0.159  Sum_probs=26.3

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.....+.+.|.+|+|+|++++|++++.|++
T Consensus       308 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  338 (369)
T 3zwl_B          308 IGRVQGHFGPLNTVAISPQGTSYASGGEDGF  338 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             hhheecccCcEEEEEECCCCCEEEEEcCCCe
Confidence            4444568899999999999999999999873

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=96.83  E-value=0.0023  Score=38.55  Aligned_cols=33  Identities=18%  Similarity=0.178  Sum_probs=27.7

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+.....+.+.|.+|+|+|++++|++++.|+.
T Consensus       325 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  357 (408)
T 4a11_B          325 EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCN  357 (408)
T ss_dssp             CEEEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             cceeeeccCCCeEEEEEEcCCCCEEEEECCCCe
Confidence            344455678899999999999999999999974

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=96.82  E-value=0.0011  Score=41.93  Aligned_cols=27  Identities=26%  Similarity=0.416  Sum_probs=23.8

Q ss_pred             CCCCCCeEEEEEcC-CCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSP-KANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp-~~~~La~sSWD~~   49 (49)
                      ..|.+.|.+|+|+| ++++|+++|+|++
T Consensus       161 ~gH~~~V~~l~f~p~~~~~l~s~s~D~~  188 (435)
T 4e54_B          161 IGAGGSITGLKFNPLNTNQFYASSMEGT  188 (435)
T ss_dssp             CSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred             cCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence            46889999999999 5789999999974

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=96.79  E-value=0.0015  Score=40.68  Aligned_cols=30  Identities=20%  Similarity=0.270  Sum_probs=26.0

Q ss_pred             EecCCCCCCeEEEEEcC-CCCeEEEEeccCC
Q 045898           20 EVSQPPSDSVSSLCFSP-KANILVATSWDNQ   49 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp-~~~~La~sSWD~~   49 (49)
                      ++...+.+.|.+|+|+| ++++|++++.|++
T Consensus        57 ~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~   87 (437)
T 3gre_A           57 TLMENEPNSITSSAVSPGETPYLITGSDQGV   87 (437)
T ss_dssp             EECTTTTSCEEEEEEECSSSCEEEEEETTSE
T ss_pred             eeccCCCCceEEEEECCCCCCEEEEecCCce
Confidence            34377889999999999 9999999999973

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=96.77  E-value=0.0016  Score=39.53  Aligned_cols=31  Identities=23%  Similarity=0.297  Sum_probs=26.2

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.....+.+.|.+|+|+|++++|++++.|++
T Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~   78 (377)
T 3dwl_C           48 ARTFSDHDKIVTCVDWAPKSNRIVTCSQDRN   78 (377)
T ss_dssp             CCCBCCCSSCEEEEEECTTTCCEEEEETTSS
T ss_pred             EEEEecCCceEEEEEEeCCCCEEEEEeCCCe
Confidence            3344568899999999999999999999974

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=96.75  E-value=0.0023  Score=39.24  Aligned_cols=33  Identities=27%  Similarity=0.378  Sum_probs=27.8

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+.....+.+.|.+|+|+|++++|++++.|++
T Consensus       130 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~  162 (420)
T 3vl1_A          130 LQREIDQAHVSEITKLKFFPSGEALISSSQDMQ  162 (420)
T ss_dssp             EEEEETTSSSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceeeecccccCccEEEEECCCCCEEEEEeCCCe
Confidence            445555688999999999999999999999873

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=96.74  E-value=0.0024  Score=38.10  Aligned_cols=32  Identities=25%  Similarity=0.264  Sum_probs=27.1

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      +.......+...|.+|+|+|++++|++++.|+
T Consensus        56 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   87 (312)
T 4ery_A           56 KFEKTISGHKLGISDVAWSSDSNLLVSASDDK   87 (312)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccchhhccCCCceEEEEEcCCCCEEEEECCCC
Confidence            34445567889999999999999999999986

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=96.69  E-value=0.003  Score=37.43  Aligned_cols=28  Identities=11%  Similarity=0.232  Sum_probs=24.9

Q ss_pred             cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           22 SQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ...+.+.|.+|+|+|++++|++++.|+.
T Consensus        28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~   55 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGDLLFSCSKDSS   55 (369)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEESSSC
T ss_pred             EEEeeceEEEEEEcCCCCEEEEEeCCCE
Confidence            3578999999999999999999998863

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=96.67  E-value=0.0016  Score=41.27  Aligned_cols=28  Identities=18%  Similarity=0.308  Sum_probs=23.5

Q ss_pred             cCCCCCCeEEEEEcCC-CCeEEEEeccCC
Q 045898           22 SQPPSDSVSSLCFSPK-ANILVATSWDNQ   49 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~-~~~La~sSWD~~   49 (49)
                      ..++++.|++|+|+|. .++||+|+.|++
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~  143 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGD  143 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSC
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence            4467789999999995 579999999974

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=96.67  E-value=0.0019  Score=40.86  Aligned_cols=31  Identities=26%  Similarity=0.260  Sum_probs=26.5

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.....+.+.|.+|+|+|++++|+++|+|++
T Consensus       373 ~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~  403 (410)
T 1vyh_C          373 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT  403 (410)
T ss_dssp             CEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred             EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence            3444578899999999999999999999974

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=96.64  E-value=0.0018  Score=45.90  Aligned_cols=26  Identities=12%  Similarity=0.121  Sum_probs=24.1

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+.+.|.+|+|||++++||++++|++
T Consensus       486 ~h~~~V~svafspdg~~LAsgs~Dgt  511 (902)
T 2oaj_A          486 AKELAVDKISFAAETLELAVSIETGD  511 (902)
T ss_dssp             SSSCCEEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCceeEEEecCCCCeEEEEecCcE
Confidence            67789999999999999999999985

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=96.61  E-value=0.003  Score=39.27  Aligned_cols=25  Identities=16%  Similarity=0.082  Sum_probs=23.2

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           25 PSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        25 p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+.|.+|+|+|++++|+++|.|++
T Consensus       239 h~~~v~~~~~s~~~~~l~s~s~d~~  263 (355)
T 3vu4_A          239 DRADVVDMKWSTDGSKLAVVSDKWT  263 (355)
T ss_dssp             CCSCEEEEEECTTSCEEEEEETTCE
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCE
Confidence            7899999999999999999999873

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.61  E-value=0.0042  Score=38.18  Aligned_cols=31  Identities=19%  Similarity=0.242  Sum_probs=26.4

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.....+.+.|.+|+|+|++++|++++.|++
T Consensus       241 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~  271 (321)
T 3ow8_A          241 AGTLSGHASWVLNVAFCPDDTHFVSSSSDKS  271 (321)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eEEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence            4445678899999999999999999999974

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=96.60  E-value=0.0032  Score=37.90  Aligned_cols=29  Identities=24%  Similarity=0.332  Sum_probs=24.7

Q ss_pred             ecCCCCCCeEEEEEcCCC---CeEEEEeccCC
Q 045898           21 VSQPPSDSVSSLCFSPKA---NILVATSWDNQ   49 (49)
Q Consensus        21 l~~~p~D~IS~l~Fsp~~---~~La~sSWD~~   49 (49)
                      ....+.+.|.+|+|+|++   ++||++|+|++
T Consensus       199 ~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~  230 (297)
T 2pm7_B          199 TLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT  230 (297)
T ss_dssp             EECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred             EecCCCCceEEEEECCCCCCceEEEEEECCCc
Confidence            345788999999999985   79999999974

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=96.58  E-value=0.004  Score=38.13  Aligned_cols=32  Identities=16%  Similarity=0.242  Sum_probs=26.6

Q ss_pred             eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+.....+.+.|.+|+|+|++++|++++.|++
T Consensus       110 ~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~  141 (343)
T 2xzm_R          110 TYKRFVGHQSEVYSVAFSPDNRQILSAGAERE  141 (343)
T ss_dssp             EEEEEECCCSCEEEEEECSSTTEEEEEETTSC
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCE
Confidence            34444578899999999999999999998874

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.56  E-value=0.0046  Score=37.79  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=27.7

Q ss_pred             ceEEecCCCCCCeEEEEEcCCC-CeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKA-NILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~-~~La~sSWD~~   49 (49)
                      ..+....++.+.|.+|+|+|++ ++|++++.|++
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~   97 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGD   97 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSC
T ss_pred             ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCe
Confidence            3345557889999999999998 89999999874

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=96.53  E-value=0.0021  Score=39.16  Aligned_cols=27  Identities=33%  Similarity=0.357  Sum_probs=23.8

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+.+.|.+|+|+|++++||+++.|++
T Consensus       259 ~~~~~~v~~v~~sp~g~~las~~~D~~  285 (316)
T 3bg1_A          259 HKFNDVVWHVSWSITANILAVSGGDNK  285 (316)
T ss_dssp             EECSSCEEEEEECTTTCCEEEEESSSC
T ss_pred             hcCCCcEEEEEEcCCCCEEEEEcCCCe
Confidence            346789999999999999999999874

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=96.53  E-value=0.0022  Score=40.39  Aligned_cols=27  Identities=7%  Similarity=0.186  Sum_probs=22.9

Q ss_pred             cCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           22 SQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ...+...|.+|+|||++++||++|-|+
T Consensus       355 ~~~~~~~V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          355 PIQLGMPIVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            345678999999999999999998764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=96.49  E-value=0.0029  Score=37.60  Aligned_cols=30  Identities=27%  Similarity=0.412  Sum_probs=25.0

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEE-EEeccC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILV-ATSWDN   48 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La-~sSWD~   48 (49)
                      +.....+.+.|.+|+|+|++++|+ +++.|+
T Consensus       314 ~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~  344 (357)
T 3i2n_A          314 LQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ  344 (357)
T ss_dssp             EEEEECCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             eeccccCCCCeeEEEEcCCCCeEEEEecCCC
Confidence            444556789999999999999998 789886

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=96.48  E-value=0.003  Score=44.69  Aligned_cols=30  Identities=7%  Similarity=-0.074  Sum_probs=25.9

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.....+.+.|.+|+|||+| +||+++.|++
T Consensus       568 ~~~l~~h~~~V~svafSpdG-~lAsgs~D~t  597 (902)
T 2oaj_A          568 STAVHANKGKTSAINNSNIG-FVGIAYAAGS  597 (902)
T ss_dssp             EEEECCCSCSEEEEEECBTS-EEEEEETTSE
T ss_pred             eEEEEcCCCcEEEEEecCCc-EEEEEeCCCc
Confidence            44556789999999999999 9999999873

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.47  E-value=0.0063  Score=37.35  Aligned_cols=31  Identities=13%  Similarity=0.163  Sum_probs=26.5

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.....+.+.|.+|+|+|++++|++++.|++
T Consensus       283 ~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~  313 (321)
T 3ow8_A          283 VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQE  313 (321)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTCC
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence            4444578899999999999999999999974

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=96.45  E-value=0.0056  Score=37.28  Aligned_cols=32  Identities=19%  Similarity=0.203  Sum_probs=27.1

Q ss_pred             eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+.....+.+.|.+|+|+|++++|+++|+|++
T Consensus        99 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~  130 (319)
T 3frx_A           99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKT  130 (319)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEETTSC
T ss_pred             eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            34444578899999999999999999999974

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=96.44  E-value=0.0011  Score=41.67  Aligned_cols=28  Identities=7%  Similarity=0.099  Sum_probs=24.6

Q ss_pred             cCCCCCCeEEEEEcC--------CCCeEEEEeccCC
Q 045898           22 SQPPSDSVSSLCFSP--------KANILVATSWDNQ   49 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp--------~~~~La~sSWD~~   49 (49)
                      ...|++.|.+|+|+|        ++++||++|+|++
T Consensus       132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t  167 (393)
T 4gq1_A          132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT  167 (393)
T ss_dssp             TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred             cCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence            467899999999998        6789999999974

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=96.42  E-value=0.0054  Score=37.19  Aligned_cols=30  Identities=23%  Similarity=0.394  Sum_probs=25.5

Q ss_pred             EecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           20 EVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+..++.+.|.+|+|+|++++|++++.|++
T Consensus       140 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~  169 (377)
T 3dwl_C          140 HLKRPLRSTILSLDWHPNNVLLAAGCADRK  169 (377)
T ss_dssp             EECSSCCSCEEEEEECTTSSEEEEEESSSC
T ss_pred             EeecccCCCeEEEEEcCCCCEEEEEeCCCE
Confidence            344448899999999999999999999874

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.41  E-value=0.0033  Score=42.11  Aligned_cols=29  Identities=21%  Similarity=0.346  Sum_probs=25.6

Q ss_pred             ecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           21 VSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        21 l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ....|.+.|.+|+|+|++++|+++|+|++
T Consensus       425 ~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~  453 (694)
T 3dm0_A          425 RLTGHSHFVEDVVLSSDGQFALSGSWDGE  453 (694)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence            34578899999999999999999999973

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=96.36  E-value=0.0085  Score=35.54  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=27.2

Q ss_pred             ceEEecCCCCCCeEEEEEcC-CCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSP-KANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp-~~~~La~sSWD~~   49 (49)
                      +.+.....+.+.|.+|+|+| ++++|++++.|++
T Consensus       106 ~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~  139 (366)
T 3k26_A          106 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHA  139 (366)
T ss_dssp             CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSC
T ss_pred             eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCe
Confidence            44445557889999999999 8899999999874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=96.33  E-value=0.0062  Score=38.11  Aligned_cols=33  Identities=27%  Similarity=0.310  Sum_probs=27.5

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+.....+.+.|.+|+|+|++++|++++.|++
T Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~  188 (393)
T 1erj_A          156 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT  188 (393)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCc
Confidence            334555678999999999999999999998863

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.29  E-value=0.004  Score=38.61  Aligned_cols=29  Identities=17%  Similarity=0.287  Sum_probs=25.0

Q ss_pred             ecCCCCCCeEEEEEcC-CCCeEEEEeccCC
Q 045898           21 VSQPPSDSVSSLCFSP-KANILVATSWDNQ   49 (49)
Q Consensus        21 l~~~p~D~IS~l~Fsp-~~~~La~sSWD~~   49 (49)
                      ....+.+.|.+|+|+| ++++|++++.|++
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~  105 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCT  105 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSE
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCe
Confidence            3456889999999999 8899999999873

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=96.27  E-value=0.0056  Score=37.55  Aligned_cols=30  Identities=10%  Similarity=0.163  Sum_probs=25.8

Q ss_pred             EecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           20 EVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .....+.+.|.+|+|+|++++|++++.|++
T Consensus       175 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~  204 (420)
T 3vl1_A          175 RTLIGHRATVTDIAIIDRGRNVLSASLDGT  204 (420)
T ss_dssp             EEEECCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             eEEcCCCCcEEEEEEcCCCCEEEEEcCCCc
Confidence            334578899999999999999999999974

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.25  E-value=0.0069  Score=36.22  Aligned_cols=32  Identities=16%  Similarity=0.303  Sum_probs=26.6

Q ss_pred             eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+.....+.+.|.+|+|+|++++|++++.|++
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~   75 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN   75 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCe
Confidence            34444578899999999999999999998874

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.25  E-value=0.0028  Score=37.93  Aligned_cols=28  Identities=4%  Similarity=0.039  Sum_probs=24.2

Q ss_pred             ecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           21 VSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        21 l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      +...+.+.|.+++|+|++++|++++-|+
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~   30 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNH   30 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSS
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCC
Confidence            4455889999999999999999998776

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=96.23  E-value=0.0082  Score=35.51  Aligned_cols=32  Identities=22%  Similarity=0.402  Sum_probs=25.5

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      +.+.....+...|.+|+|+|++++|+++|-|+
T Consensus       306 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~  337 (368)
T 3mmy_A          306 TKLKTSEQLDQPISACCFNHNGNIFAYASSYD  337 (368)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred             cEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence            34455567789999999999999999987553

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=96.21  E-value=0.0083  Score=35.59  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCeEEEEeccCC
Q 045898           26 SDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        26 ~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ...|.+|+|+|++++|++++.|++
T Consensus       335 ~~~v~~~~~s~~~~~l~s~~~dg~  358 (366)
T 3k26_A          335 GAAIRQTSFSRDSSILIAVCDDAS  358 (366)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSE
T ss_pred             CCceEEEEeCCCCCeEEEEeCCCE
Confidence            699999999999999999999873

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.0027  Score=42.73  Aligned_cols=26  Identities=15%  Similarity=0.215  Sum_probs=23.9

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+.+.|.+|+|||++++|+++|.|++
T Consensus       395 gH~~~V~sva~Sp~g~~l~Sgs~Dgt  420 (524)
T 2j04_B          395 SRETTITAIGVSRLHPMVLAGSADGS  420 (524)
T ss_dssp             ECSSCEEEEECCSSCCBCEEEETTTE
T ss_pred             cCCCceEEEEeCCCCCeEEEEECCCE
Confidence            57899999999999999999999974

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.13  E-value=0.01  Score=36.93  Aligned_cols=27  Identities=19%  Similarity=0.117  Sum_probs=23.8

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+.+.|.+|+|+|++++|++++.|+.
T Consensus       131 ~~~~~~v~~v~~s~~~~~l~~~~~dg~  157 (401)
T 4aez_A          131 TDESTYVASVKWSHDGSFLSVGLGNGL  157 (401)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred             cCCCCCEEEEEECCCCCEEEEECCCCe
Confidence            347899999999999999999999874

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.10  E-value=0.01  Score=35.37  Aligned_cols=31  Identities=19%  Similarity=0.289  Sum_probs=26.0

Q ss_pred             EEecCCCCCCeEEEEEcCC--CCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPK--ANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~--~~~La~sSWD~~   49 (49)
                      +.....+.+.|.+|+|+|+  +++|++++.|++
T Consensus        48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A           48 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             EEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             eeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            3445678899999999987  899999999974

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=96.07  E-value=0.0059  Score=43.11  Aligned_cols=26  Identities=15%  Similarity=0.023  Sum_probs=23.8

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .|.+.|.+++|||++++||++|.|++
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~  108 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGN  108 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCc
Confidence            55899999999999999999999974

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=96.00  E-value=0.0092  Score=34.74  Aligned_cols=31  Identities=10%  Similarity=0.059  Sum_probs=26.7

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      +.+.....+.+.|.+|+| |++++|++++.|+
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg   39 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDG   39 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTS
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCC
Confidence            445556789999999999 9999999999987

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=95.99  E-value=0.0051  Score=43.43  Aligned_cols=23  Identities=13%  Similarity=0.244  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCeEEEEeccCC
Q 045898           27 DSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        27 D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..|.+|+|||++++||+++.|++
T Consensus       130 ~sv~svafSPDG~~LAsgs~DGt  152 (588)
T 2j04_A          130 RTYHCFEWNPIESSIVVGNEDGE  152 (588)
T ss_dssp             TCEEEEEECSSSSCEEEEETTSE
T ss_pred             ccEEEEEEcCCCCEEEEEcCCCE
Confidence            36999999999999999998874

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=95.97  E-value=0.011  Score=39.52  Aligned_cols=32  Identities=16%  Similarity=0.143  Sum_probs=27.0

Q ss_pred             eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+.....+.+.|.+|+|+|++++|++++.|++
T Consensus       553 ~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~  584 (694)
T 3dm0_A          553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV  584 (694)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSB
T ss_pred             EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence            34445678899999999999999999999873

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.011  Score=34.34  Aligned_cols=32  Identities=16%  Similarity=0.233  Sum_probs=26.3

Q ss_pred             eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .......+...|.+|+|+|++++|++++.|+.
T Consensus        51 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~   82 (313)
T 3odt_A           51 LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTM   82 (313)
T ss_dssp             EEEEEEECSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             EEEEeecCCccEEEEEECCCCCEEEEecCCCe
Confidence            34445567899999999999999999998863

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=95.96  E-value=0.0075  Score=39.16  Aligned_cols=31  Identities=10%  Similarity=0.195  Sum_probs=25.9

Q ss_pred             EEecCCCCCCeEEEEEcCC-CCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPK-ANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~-~~~La~sSWD~~   49 (49)
                      +.+...+.+.|.+|+|+|+ +++|+++++|++
T Consensus       142 ~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~  173 (434)
T 2oit_A          142 HKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS  173 (434)
T ss_dssp             EECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred             eeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence            4455567899999999998 789999999974

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=95.95  E-value=0.017  Score=34.80  Aligned_cols=32  Identities=13%  Similarity=0.050  Sum_probs=25.9

Q ss_pred             eEEecCCCCC--CeEEEEEcCCCCeEEEEeccCC
Q 045898           18 SIEVSQPPSD--SVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        18 ~~~l~~~p~D--~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+.....+.+  .|.+++|+|++++|++++.|++
T Consensus       384 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  417 (425)
T 1r5m_A          384 LYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQE  417 (425)
T ss_dssp             EEEEECCTTCCCCEEEEEECTTSSEEEEEESSSC
T ss_pred             hhhhhcCcccCCceEEEEccCCCceEEEEecCce
Confidence            4445556655  9999999999999999999874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=95.95  E-value=0.0077  Score=37.68  Aligned_cols=27  Identities=30%  Similarity=0.362  Sum_probs=23.9

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+.+.|.+|+|+|++++|++++.|++
T Consensus       253 ~~h~~~v~~v~~~~~g~~l~s~s~d~~  279 (393)
T 1erj_A          253 TGHKDSVYSVVFTRDGQSVVSGSLDRS  279 (393)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             CCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence            457799999999999999999998863

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=95.84  E-value=0.013  Score=35.57  Aligned_cols=32  Identities=25%  Similarity=0.316  Sum_probs=27.2

Q ss_pred             eEEecCCCCCCeEEEEEcCC-CCeEEEEeccCC
Q 045898           18 SIEVSQPPSDSVSSLCFSPK-ANILVATSWDNQ   49 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~-~~~La~sSWD~~   49 (49)
                      .+.....+.+.|.+|+|+|+ +++|++++.|++
T Consensus       105 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~  137 (416)
T 2pm9_A          105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGE  137 (416)
T ss_dssp             EEEECCCSSSCCCEEEECSSSTTBEEEECSSSC
T ss_pred             chhhccCCccceEEEEEcCCCCCEEEEEcCCCe
Confidence            55556678899999999998 799999998874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=95.80  E-value=0.0063  Score=36.09  Aligned_cols=27  Identities=7%  Similarity=0.124  Sum_probs=21.1

Q ss_pred             EecCCCCCCeEEEEEcCCCC-eEEEEec
Q 045898           20 EVSQPPSDSVSSLCFSPKAN-ILVATSW   46 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp~~~-~La~sSW   46 (49)
                      .+...+.+.|.+|+|+|+++ +|+++++
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~   39 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNF   39 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC-
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCc
Confidence            34456899999999999985 6677877

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=95.76  E-value=0.023  Score=34.19  Aligned_cols=33  Identities=9%  Similarity=0.144  Sum_probs=27.2

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+.....+...|.+|+|+|++++|++++.|+.
T Consensus       140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  172 (425)
T 1r5m_A          140 ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENV  172 (425)
T ss_dssp             CEEEEECCCCSCEEEEEECTTSSEEEEEETTCC
T ss_pred             CeeeeccCCCccEEEEEECCCCCEEEEEecCCe
Confidence            344555678899999999999999999998863

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=95.75  E-value=0.011  Score=37.61  Aligned_cols=32  Identities=25%  Similarity=0.325  Sum_probs=27.4

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+.....+.+.|.+|+|+|+++ |++++.|++
T Consensus       575 ~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~  606 (615)
T 1pgu_A          575 KIIKALNAHKDGVNNLLWETPST-LVSSGADAC  606 (615)
T ss_dssp             CCEEETTSSTTCEEEEEEEETTE-EEEEETTSC
T ss_pred             eechhhhcCccceEEEEEcCCCC-eEEecCCce
Confidence            45666677899999999999999 999999874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=95.74  E-value=0.013  Score=35.49  Aligned_cols=24  Identities=33%  Similarity=0.558  Sum_probs=22.5

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeccC
Q 045898           25 PSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        25 p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      +.+.|.+|+|+|++++|++++.|+
T Consensus       290 ~~~~v~~~~~~~~~~~l~~~~~dg  313 (397)
T 1sq9_A          290 HSSWVMSLSFNDSGETLCSAGWDG  313 (397)
T ss_dssp             BSSCEEEEEECSSSSEEEEEETTS
T ss_pred             cCCcEEEEEECCCCCEEEEEeCCC
Confidence            689999999999999999999886

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=95.73  E-value=0.0052  Score=42.14  Aligned_cols=30  Identities=10%  Similarity=0.121  Sum_probs=23.4

Q ss_pred             EecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           20 EVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+...+.+.|.+|+|+|++++|++++.|++
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~   32 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKT   32 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCc
Confidence            456789999999999999999999998873

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=95.72  E-value=0.014  Score=35.95  Aligned_cols=27  Identities=19%  Similarity=0.342  Sum_probs=23.9

Q ss_pred             CCCCCCeEEEEEcCCC-CeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKA-NILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~-~~La~sSWD~~   49 (49)
                      ..+.+.|.+|+|+|++ ++|++++.|++
T Consensus       223 ~~~~~~v~~~~~~p~~~~~l~s~~~dg~  250 (447)
T 3dw8_B          223 EELTEVITAAEFHPNSCNTFVYSSSKGT  250 (447)
T ss_dssp             GGCCCCEEEEEECSSCTTEEEEEETTSC
T ss_pred             cccCcceEEEEECCCCCcEEEEEeCCCe
Confidence            3578899999999998 99999999974

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=95.70  E-value=0.018  Score=35.67  Aligned_cols=26  Identities=15%  Similarity=0.308  Sum_probs=23.9

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ..+.+.|.+|+|+|++++|++++.|+
T Consensus       173 ~~~~~~v~~~~~~~~~~~l~~~~~d~  198 (402)
T 2aq5_A          173 DVHPDTIYSVDWSRDGALICTSCRDK  198 (402)
T ss_dssp             TTCCSCEEEEEECTTSSCEEEEETTS
T ss_pred             CCCCCceEEEEECCCCCEEEEEecCC
Confidence            56889999999999999999999886

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=95.65  E-value=0.022  Score=33.31  Aligned_cols=32  Identities=22%  Similarity=0.175  Sum_probs=26.3

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      +.+.....+.+.|.+|+|+|++++|++++.|+
T Consensus       174 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  205 (337)
T 1gxr_A          174 TLVRQFQGHTDGASCIDISNDGTKLWTGGLDN  205 (337)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ceeeeeecccCceEEEEECCCCCEEEEEecCC
Confidence            33444556889999999999999999999886

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=95.65  E-value=0.016  Score=35.89  Aligned_cols=25  Identities=20%  Similarity=0.364  Sum_probs=22.9

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           25 PSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        25 p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+.|.+|+|+|++++|++++.|++
T Consensus       213 h~~~v~~~~~s~~~~~l~s~~~dg~  237 (437)
T 3gre_A          213 RHGAVSSICIDEECCVLILGTTRGI  237 (437)
T ss_dssp             GGCCEEEEEECTTSCEEEEEETTSC
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCe
Confidence            6799999999999999999999874

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=95.64  E-value=0.026  Score=33.04  Aligned_cols=27  Identities=30%  Similarity=0.215  Sum_probs=24.0

Q ss_pred             cCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           22 SQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ...+...|.+++|+|++++|++++.|+
T Consensus       261 ~~~~~~~v~~~~~~~~~~~l~~~~~dg  287 (337)
T 1gxr_A          261 LHLHESCVLSLKFAYCGKWFVSTGKDN  287 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EcCCccceeEEEECCCCCEEEEecCCC
Confidence            356788999999999999999999886

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=95.62  E-value=0.023  Score=36.22  Aligned_cols=32  Identities=19%  Similarity=0.214  Sum_probs=26.6

Q ss_pred             ceEEecCCCCCC-eEEEEEcC--CCCeEEEEeccC
Q 045898           17 KSIEVSQPPSDS-VSSLCFSP--KANILVATSWDN   48 (49)
Q Consensus        17 ~~~~l~~~p~D~-IS~l~Fsp--~~~~La~sSWD~   48 (49)
                      +.+.....+.+. |.+|+|+|  ++++|++++-|+
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg   88 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESG   88 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTS
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCC
Confidence            344555678889 99999999  999999999886

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=95.60  E-value=0.015  Score=40.83  Aligned_cols=28  Identities=25%  Similarity=0.477  Sum_probs=25.1

Q ss_pred             cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           22 SQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..++.+.|.+++|||++++|++++.|++
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~  638 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKT  638 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCe
Confidence            4578899999999999999999998874

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=95.58  E-value=0.0089  Score=38.79  Aligned_cols=26  Identities=31%  Similarity=0.606  Sum_probs=23.2

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ++.+.|.+|+|+|++++|++++.|++
T Consensus       190 ~~~~~v~~v~wspdg~~lasgs~dg~  215 (434)
T 2oit_A          190 PSTVAVTSVCWSPKGKQLAVGKQNGT  215 (434)
T ss_dssp             CGGGCEEEEEECTTSSCEEEEETTSC
T ss_pred             CCCCceeEEEEcCCCCEEEEEcCCCc
Confidence            46789999999999999999998874

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.55  E-value=0.019  Score=35.00  Aligned_cols=26  Identities=19%  Similarity=0.009  Sum_probs=22.4

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+...|.+++|+|++++|++++.|++
T Consensus       168 ~~~~~i~~~~~~pdg~~lasg~~dg~  193 (343)
T 3lrv_A          168 KSDVEYSSGVLHKDSLLLALYSPDGI  193 (343)
T ss_dssp             CSSCCCCEEEECTTSCEEEEECTTSC
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCE
Confidence            34568999999999999999998874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=95.51  E-value=0.025  Score=35.37  Aligned_cols=33  Identities=15%  Similarity=0.225  Sum_probs=27.4

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+.....+.+.|.+++|+|++++|++++.|++
T Consensus       301 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~  333 (464)
T 3v7d_B          301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTT  333 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc
Confidence            334445678899999999999999999999874

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=95.50  E-value=0.02  Score=34.94  Aligned_cols=31  Identities=19%  Similarity=0.324  Sum_probs=25.6

Q ss_pred             eEEecCCCCCCeEEEEEcCCCC-eEEEEeccC
Q 045898           18 SIEVSQPPSDSVSSLCFSPKAN-ILVATSWDN   48 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~~~-~La~sSWD~   48 (49)
                      .+.....+.+.|.+|+|+|+++ +|++++.|+
T Consensus       196 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  227 (383)
T 3ei3_B          196 EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDA  227 (383)
T ss_dssp             EEEEEECSSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             EEEEeccCCCcEEEEEECCCCCCEEEEEeCCC
Confidence            3344456889999999999998 899999886

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=95.50  E-value=0.018  Score=35.05  Aligned_cols=26  Identities=12%  Similarity=0.142  Sum_probs=22.9

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+.+.|.+|+|+|++++|++++.|++
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~   90 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGS   90 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCe
Confidence            46789999999999999999998863

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.49  E-value=0.022  Score=34.67  Aligned_cols=30  Identities=3%  Similarity=0.055  Sum_probs=24.1

Q ss_pred             EecCCCCCCeEEEEEcC--CCCeEEEEeccCC
Q 045898           20 EVSQPPSDSVSSLCFSP--KANILVATSWDNQ   49 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp--~~~~La~sSWD~~   49 (49)
                      .+..++.+.|.+|+|+|  ++++|++++.|++
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~  150 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGT  150 (343)
T ss_dssp             EEECCCSSCEEEEECCC---CCEEEEEETTCC
T ss_pred             EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCc
Confidence            33446678999999999  9999999999974

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=95.46  E-value=0.02  Score=33.93  Aligned_cols=23  Identities=30%  Similarity=0.418  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCeEEEEeccCC
Q 045898           27 DSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        27 D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..|.+++|+|++++|++++.|++
T Consensus       252 ~~i~~~~~s~~~~~l~~~~~dg~  274 (342)
T 1yfq_A          252 YPVNSIEFSPRHKFLYTAGSDGI  274 (342)
T ss_dssp             CCEEEEEECTTTCCEEEEETTSC
T ss_pred             eeEEEEEEcCCCCEEEEecCCce
Confidence            39999999999999999998863

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=95.37  E-value=0.035  Score=34.46  Aligned_cols=33  Identities=24%  Similarity=0.214  Sum_probs=27.3

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+.....+...|.+++|+|++++|++++.|++
T Consensus       208 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~  240 (401)
T 4aez_A          208 HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV  240 (401)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe
Confidence            334455678899999999999999999998874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=95.33  E-value=0.016  Score=36.60  Aligned_cols=25  Identities=16%  Similarity=0.243  Sum_probs=20.9

Q ss_pred             CCCCCeEEEEEcCCCCeE-EEEeccC
Q 045898           24 PPSDSVSSLCFSPKANIL-VATSWDN   48 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~L-a~sSWD~   48 (49)
                      ++.+.|.+|+|+|++++| ++++.|+
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg  125 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDK  125 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGT
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCC
Confidence            345689999999999986 8888886

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=95.16  E-value=0.027  Score=39.54  Aligned_cols=30  Identities=13%  Similarity=0.103  Sum_probs=25.7

Q ss_pred             EecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           20 EVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .....+.+.|.+++|||++++|++++.|++
T Consensus      1121 ~~l~~h~~~v~~~~~s~dg~~lat~~~dg~ 1150 (1249)
T 3sfz_A         1121 HELKGHNGCVRCSAFSLDGILLATGDDNGE 1150 (1249)
T ss_dssp             BCCCCCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred             eeeccCCCcEEEEEECCCCCEEEEEeCCCE
Confidence            334567899999999999999999999874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=95.01  E-value=0.054  Score=33.81  Aligned_cols=32  Identities=25%  Similarity=0.182  Sum_probs=26.1

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+.....+.+.|.+|+|+|++ +|++++.|++
T Consensus       153 ~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~  184 (464)
T 3v7d_B          153 KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRT  184 (464)
T ss_dssp             EEEEEECCCSSCEEEEEECSTT-EEEEEETTSC
T ss_pred             cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCC
Confidence            3444456789999999999988 8999999974

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=94.95  E-value=0.027  Score=34.09  Aligned_cols=24  Identities=21%  Similarity=0.227  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCC----------CeEEEEeccCC
Q 045898           26 SDSVSSLCFSPKA----------NILVATSWDNQ   49 (49)
Q Consensus        26 ~D~IS~l~Fsp~~----------~~La~sSWD~~   49 (49)
                      .+.|.+|+|+|++          ++|+++++|+.
T Consensus       354 ~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~  387 (397)
T 1sq9_A          354 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRS  387 (397)
T ss_dssp             SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTE
T ss_pred             CCceeEEEeccccccccccccccceEEEecCCCc
Confidence            8999999999998          79999999873

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.86  E-value=0.02  Score=38.07  Aligned_cols=28  Identities=21%  Similarity=0.325  Sum_probs=24.2

Q ss_pred             ecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           21 VSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        21 l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ....+.+.|.+|+|+|++++||+++-|+
T Consensus         8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g   35 (814)
T 3mkq_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSG   35 (814)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTS
T ss_pred             eeecCCCceEEEEECCCCCEEEEEeCCC
Confidence            3456889999999999999999998775

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=94.67  E-value=0.017  Score=36.50  Aligned_cols=28  Identities=4%  Similarity=0.133  Sum_probs=24.1

Q ss_pred             cCCCCCCeEEEEEcCC---CCeEEEEeccCC
Q 045898           22 SQPPSDSVSSLCFSPK---ANILVATSWDNQ   49 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~---~~~La~sSWD~~   49 (49)
                      ...+.+.|.+|+|+|+   +++|++++.|++
T Consensus       191 ~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~  221 (450)
T 2vdu_B          191 ILGHVSMLTDVHLIKDSDGHQFIITSDRDEH  221 (450)
T ss_dssp             SEECSSCEEEEEEEECTTSCEEEEEEETTSC
T ss_pred             eecccCceEEEEEcCCCCCCcEEEEEcCCCc
Confidence            3457789999999999   899999999874

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=94.66  E-value=0.074  Score=33.54  Aligned_cols=32  Identities=19%  Similarity=0.342  Sum_probs=26.2

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCC-eEEEEeccC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKAN-ILVATSWDN   48 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~-~La~sSWD~   48 (49)
                      ..+.....+.+.|.+++|+|+++ +|++++.|+
T Consensus       369 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg  401 (430)
T 2xyi_A          369 ELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN  401 (430)
T ss_dssp             TEEEECCCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             ceEEEcCCCCCCceEEEECCCCCCEEEEEECCC
Confidence            34455567789999999999998 889999886

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=94.55  E-value=0.061  Score=36.87  Aligned_cols=31  Identities=19%  Similarity=0.289  Sum_probs=26.4

Q ss_pred             EEecCCCCCCeEEEEEcCC--CCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPK--ANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~--~~~La~sSWD~~   49 (49)
                      +.....+.+.|.+|+|+|+  +++|++++.|++
T Consensus        46 ~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~   78 (753)
T 3jro_A           46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   78 (753)
T ss_dssp             EEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred             ceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence            4445678999999999998  899999999974

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.53  E-value=0.056  Score=35.97  Aligned_cols=32  Identities=16%  Similarity=0.181  Sum_probs=26.6

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      +.+.....+.+.|.+++|+|++++|++++.|+
T Consensus        88 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  119 (814)
T 3mkq_A           88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL  119 (814)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCC
Confidence            34444567889999999999999999999886

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=94.34  E-value=0.051  Score=36.49  Aligned_cols=26  Identities=15%  Similarity=0.042  Sum_probs=22.1

Q ss_pred             CCCCCeEEEEEcCC------CCeEEEEeccCC
Q 045898           24 PPSDSVSSLCFSPK------ANILVATSWDNQ   49 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~------~~~La~sSWD~~   49 (49)
                      .+.+.|.+|+|+|.      +++||++|+|++
T Consensus       205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgt  236 (524)
T 2j04_B          205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGT  236 (524)
T ss_dssp             ECCCSEEEEEECSSCCCSSSSCEEEEEETTSC
T ss_pred             ecCCcEEEEEECCCCCCCCCCceEEEEecCCe
Confidence            45688999999997      479999999974

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=93.86  E-value=0.03  Score=35.08  Aligned_cols=27  Identities=11%  Similarity=-0.029  Sum_probs=23.7

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+...|.+|+|+|++.+|++++.|++
T Consensus       404 ~~~~~~v~~~~~s~~~~~la~~~~dg~  430 (445)
T 2ovr_B          404 GGSGGVVWRIRASNTKLVCAVGSRNGT  430 (445)
T ss_dssp             GGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             CCCCceEEEEEecCCEEEEEEcccCCC
Confidence            356788999999999999999999874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=93.70  E-value=0.051  Score=34.61  Aligned_cols=25  Identities=16%  Similarity=0.345  Sum_probs=22.1

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      .+.+.|.+++|||+++.|+.+++|+
T Consensus       176 ~~~~~v~~~~~Spdg~~la~~s~~~  200 (415)
T 2hqs_A          176 RSPQPLMSPAWSPDGSKLAYVTFES  200 (415)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTT
T ss_pred             CCCCcceeeEEcCCCCEEEEEEecC
Confidence            4568899999999999999999874

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=93.11  E-value=0.091  Score=29.80  Aligned_cols=23  Identities=17%  Similarity=0.252  Sum_probs=19.8

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEe
Q 045898           23 QPPSDSVSSLCFSPKANILVATS   45 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sS   45 (49)
                      ..+.+.|.+++|+|++++|++++
T Consensus        38 ~~~~~~v~~~~~spdg~~l~~~~   60 (297)
T 2ojh_A           38 WQTPELFEAPNWSPDGKYLLLNS   60 (297)
T ss_dssp             EEESSCCEEEEECTTSSEEEEEE
T ss_pred             ccCCcceEeeEECCCCCEEEEEc
Confidence            34678999999999999998876

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=92.79  E-value=0.087  Score=33.21  Aligned_cols=28  Identities=21%  Similarity=0.265  Sum_probs=24.0

Q ss_pred             cCCCCCCeEEEEEcCCCC-eEEEEeccCC
Q 045898           22 SQPPSDSVSSLCFSPKAN-ILVATSWDNQ   49 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~-~La~sSWD~~   49 (49)
                      ...+.+.|.+|+|+|+++ +|++++.|++
T Consensus       177 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  205 (430)
T 2xyi_A          177 LRGHQKEGYGLSWNPNLNGYLLSASDDHT  205 (430)
T ss_dssp             EECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred             ecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence            346788999999999987 9999998874

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=91.84  E-value=0.24  Score=28.05  Aligned_cols=29  Identities=21%  Similarity=0.109  Sum_probs=22.5

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEecc
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWD   47 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD   47 (49)
                      +.....+...|..++|+|++++|++++.|
T Consensus       209 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  237 (297)
T 2ojh_A          209 VERITDSAYGDWFPHPSPSGDKVVFVSYD  237 (297)
T ss_dssp             EEECCCCSEEEEEEEECTTSSEEEEEEEE
T ss_pred             cEEEecCCcccCCeEECCCCCEEEEEEcC
Confidence            33344556789999999999999888765

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=91.44  E-value=0.12  Score=34.50  Aligned_cols=26  Identities=19%  Similarity=0.163  Sum_probs=20.5

Q ss_pred             CCCCCeEEEEEcC---CCCeEEEEeccCC
Q 045898           24 PPSDSVSSLCFSP---KANILVATSWDNQ   49 (49)
Q Consensus        24 ~p~D~IS~l~Fsp---~~~~La~sSWD~~   49 (49)
                      .+...|+.++|||   ++++|+++|+|++
T Consensus       176 ~~~~~v~~l~fs~~~g~~~~LaSgS~D~T  204 (356)
T 2w18_A          176 LMPPEETILTFAEVQGMQEALLGTTIMNN  204 (356)
T ss_dssp             ECCCSSCEEEEEEEETSTTEEEEEETTSE
T ss_pred             cCCCceeeEEeeccCCCCceEEEecCCCc
Confidence            4555677888998   5689999999984

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=91.07  E-value=0.29  Score=29.33  Aligned_cols=24  Identities=13%  Similarity=0.227  Sum_probs=19.8

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeccC
Q 045898           25 PSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        25 p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      +...+..|+|+|++++|++++.+.
T Consensus       284 ~~~~~~~~~~spdg~~l~v~~~~~  307 (347)
T 3hfq_A          284 EGDFPRDFDLDPTEAFVVVVNQNT  307 (347)
T ss_dssp             SSSCCCEEEECTTSSEEEEEETTT
T ss_pred             CCCCcCeEEECCCCCEEEEEEcCC
Confidence            345688999999999999988763

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=91.05  E-value=0.35  Score=31.89  Aligned_cols=19  Identities=16%  Similarity=0.267  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCeEEEEeccC
Q 045898           30 SSLCFSPKANILVATSWDN   48 (49)
Q Consensus        30 S~l~Fsp~~~~La~sSWD~   48 (49)
                      .+++|||+++.|+.++.|+
T Consensus       176 ~~~~~SpDg~~la~~~~~~  194 (723)
T 1xfd_A          176 IAHWWSPDGTRLAYAAIND  194 (723)
T ss_dssp             EEEEECTTSSEEEEEEEEC
T ss_pred             ceEEECCCCCEEEEEEECC
Confidence            7899999999999998874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=90.89  E-value=0.4  Score=30.45  Aligned_cols=25  Identities=24%  Similarity=0.201  Sum_probs=19.4

Q ss_pred             CCCCCeEEEEEcCCCCeEE-EEeccC
Q 045898           24 PPSDSVSSLCFSPKANILV-ATSWDN   48 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La-~sSWD~   48 (49)
                      .+.+.|.+++|||+++.|+ +++.|+
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g  245 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTG  245 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCC
Confidence            4557899999999999887 555543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=90.36  E-value=0.58  Score=29.21  Aligned_cols=31  Identities=16%  Similarity=0.255  Sum_probs=23.9

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+.....+.+.|.+|+|  ++++|++++.|++
T Consensus       164 ~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~  194 (435)
T 1p22_A          164 ECKRILTGHTGSVLCLQY--DERVIITGSSDST  194 (435)
T ss_dssp             CEEEEECCCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred             eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCe
Confidence            344455678889999998  7789999998874

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=90.17  E-value=0.43  Score=31.49  Aligned_cols=20  Identities=10%  Similarity=-0.044  Sum_probs=17.7

Q ss_pred             CeEEEEEcCCCCeEEEEecc
Q 045898           28 SVSSLCFSPKANILVATSWD   47 (49)
Q Consensus        28 ~IS~l~Fsp~~~~La~sSWD   47 (49)
                      .|.+++|||++++|+.++.|
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~   81 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNV   81 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESC
T ss_pred             ccceEEECCCCCEEEEEecC
Confidence            49999999999999988765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=90.12  E-value=0.3  Score=34.50  Aligned_cols=25  Identities=8%  Similarity=0.097  Sum_probs=21.7

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEecc
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWD   47 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD   47 (49)
                      ..+...|++++|||+|++||.++++
T Consensus        49 t~~~~~v~~~~~SPDG~~la~~s~~   73 (1045)
T 1k32_A           49 VSNLGVINNARFFPDGRKIAIRVMR   73 (1045)
T ss_dssp             ECSSSEEEEEEECTTSSEEEEEEEE
T ss_pred             eeCCCcccCeEECCCCCEEEEEEee
Confidence            3567889999999999999988875

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=90.12  E-value=0.45  Score=30.93  Aligned_cols=26  Identities=19%  Similarity=0.171  Sum_probs=21.2

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ..+.+.+..++|||++++|++++-|+
T Consensus       191 ~~~~~~~~~~~~SpDG~~l~~~~~~~  216 (582)
T 3o4h_A          191 DSGEGSFSSASISPGMKVTAGLETAR  216 (582)
T ss_dssp             CCSSCEEEEEEECTTSCEEEEEECSS
T ss_pred             ecCCCccccceECCCCCEEEEccCCC
Confidence            45667899999999999999766554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=89.96  E-value=0.21  Score=32.83  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=21.3

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ...+.+..++|||+++.|+..+||+
T Consensus       185 ~~~~~~~~~~~SpDG~~la~~~~~~  209 (662)
T 3azo_A          185 DAHRFVTGPRLSPDGRQAVWLAWDH  209 (662)
T ss_dssp             SCSSEECCCEECTTSSEEEEEEECT
T ss_pred             cCCCcccCceECCCCCEEEEEECCC
Confidence            3447889999999999999999874

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=89.34  E-value=0.35  Score=32.08  Aligned_cols=23  Identities=9%  Similarity=0.068  Sum_probs=20.2

Q ss_pred             CCCeEEEEEcCCCCeEEEEec-cC
Q 045898           26 SDSVSSLCFSPKANILVATSW-DN   48 (49)
Q Consensus        26 ~D~IS~l~Fsp~~~~La~sSW-D~   48 (49)
                      ...|++++|||++++|+.++. |+
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~   59 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDS   59 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSS
T ss_pred             CCCCCCceEecCCCEEEEEeccCC
Confidence            467999999999999999887 65

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=88.63  E-value=0.33  Score=28.32  Aligned_cols=22  Identities=14%  Similarity=-0.064  Sum_probs=15.2

Q ss_pred             CCeEEEEEcCCCCeEEEEeccC
Q 045898           27 DSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        27 D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ..+.+++|+|++++|+++++|+
T Consensus       280 ~~~~~~~~s~dg~~l~~~~~~~  301 (337)
T 1pby_B          280 HSYYSVNVSTDGSTVWLGGALG  301 (337)
T ss_dssp             SCCCEEEECTTSCEEEEESBSS
T ss_pred             CceeeEEECCCCCEEEEEcCCC
Confidence            4566777888777777766654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=88.48  E-value=0.85  Score=27.49  Aligned_cols=22  Identities=18%  Similarity=0.287  Sum_probs=18.2

Q ss_pred             CCCeEEEEEcCCCCeEEEEecc
Q 045898           26 SDSVSSLCFSPKANILVATSWD   47 (49)
Q Consensus        26 ~D~IS~l~Fsp~~~~La~sSWD   47 (49)
                      ...+..|+|+|++++|+++..+
T Consensus       258 ~~~~~~i~~spdg~~l~v~~~~  279 (361)
T 3scy_A          258 AQGSGDIHLSPDGKYLYASNRL  279 (361)
T ss_dssp             CCCEEEEEECTTSSEEEEEECS
T ss_pred             CCCcccEEECCCCCEEEEECCC
Confidence            3667899999999999887665

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=88.19  E-value=0.54  Score=31.07  Aligned_cols=25  Identities=28%  Similarity=0.515  Sum_probs=20.7

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      .+...|.+++|||+++.|++++.|+
T Consensus       255 ~~~~~~~~~~~spdg~~l~~~~~~~  279 (706)
T 2z3z_A          255 PKEKFLTNLSWSPDENILYVAEVNR  279 (706)
T ss_dssp             CTTCEEEEEEECTTSSEEEEEEECT
T ss_pred             CCceeEeeEEEECCCCEEEEEEeCC
Confidence            3557899999999999999877664

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=88.06  E-value=0.8  Score=27.61  Aligned_cols=24  Identities=13%  Similarity=0.230  Sum_probs=19.6

Q ss_pred             cCCCCCCeEEEEEcCCCCeEEEEe
Q 045898           22 SQPPSDSVSSLCFSPKANILVATS   45 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~~La~sS   45 (49)
                      ..++...+..++|+|++++|++++
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~  229 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLIN  229 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEc
Confidence            345667889999999999887776

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=87.98  E-value=0.55  Score=31.04  Aligned_cols=19  Identities=26%  Similarity=0.296  Sum_probs=17.1

Q ss_pred             eEEEEEcCCCCeEEEEecc
Q 045898           29 VSSLCFSPKANILVATSWD   47 (49)
Q Consensus        29 IS~l~Fsp~~~~La~sSWD   47 (49)
                      +.+++|||++++|+++++|
T Consensus       183 ~~~~~~SpDg~~la~~~~d  201 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMD  201 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEE
T ss_pred             CceEEECCCCCEEEEEEEC
Confidence            5899999999999999865

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=87.92  E-value=0.4  Score=27.99  Aligned_cols=23  Identities=17%  Similarity=0.203  Sum_probs=19.9

Q ss_pred             CCCCeEEEEEcCCCCeEEEEecc
Q 045898           25 PSDSVSSLCFSPKANILVATSWD   47 (49)
Q Consensus        25 p~D~IS~l~Fsp~~~~La~sSWD   47 (49)
                      ....+..|+|+|++++|++++.+
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~   58 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRP   58 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETT
T ss_pred             cCCCCceEEECCCCCEEEEeecC
Confidence            45678899999999999998876

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=87.83  E-value=0.62  Score=31.10  Aligned_cols=20  Identities=20%  Similarity=0.167  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCeEEEEeccC
Q 045898           29 VSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        29 IS~l~Fsp~~~~La~sSWD~   48 (49)
                      +..++|||++++|++++.|+
T Consensus       181 ~~~v~~spdg~~l~v~~~d~  200 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDA  200 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTS
T ss_pred             cceEEECCCCCEEEEECCCC
Confidence            89999999999999999875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=87.74  E-value=0.56  Score=28.70  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=19.2

Q ss_pred             CCCeEEEEEcCCCCeEEEEec-cC
Q 045898           26 SDSVSSLCFSPKANILVATSW-DN   48 (49)
Q Consensus        26 ~D~IS~l~Fsp~~~~La~sSW-D~   48 (49)
                      .+.|.+++|+|++++|++++. |+
T Consensus       400 ~~~~~~~~~s~dg~~l~~~~~~d~  423 (433)
T 3bws_A          400 GNQPTGLDVSPDNRYLVISDFLDH  423 (433)
T ss_dssp             SSSEEEEEECTTSCEEEEEETTTT
T ss_pred             CCCCceEEEcCCCCEEEEEECCCC
Confidence            568999999999999988764 54

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=87.72  E-value=0.45  Score=28.32  Aligned_cols=21  Identities=10%  Similarity=0.132  Sum_probs=18.1

Q ss_pred             CCeEEEEEcCCCCeEEEEecc
Q 045898           27 DSVSSLCFSPKANILVATSWD   47 (49)
Q Consensus        27 D~IS~l~Fsp~~~~La~sSWD   47 (49)
                      ..++.++|||+++.|+..+.+
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~   79 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRAN   79 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEE
T ss_pred             ccCCCeEECCCCCEEEEEEec
Confidence            568899999999999988765

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=87.60  E-value=0.28  Score=32.52  Aligned_cols=20  Identities=10%  Similarity=0.275  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCeEEEEeccC
Q 045898           29 VSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        29 IS~l~Fsp~~~~La~sSWD~   48 (49)
                      +..++|||+++.|++++.|+
T Consensus       211 ~~~~~~SpDg~~l~~~~~d~  230 (741)
T 2ecf_A          211 HTGYWWAPDDSAIAYARIDE  230 (741)
T ss_dssp             CCSEEECTTSSCEEEEEEEC
T ss_pred             ccceEECCCCCEEEEEEEcC
Confidence            58899999999999998875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=87.57  E-value=0.35  Score=29.65  Aligned_cols=25  Identities=12%  Similarity=0.137  Sum_probs=21.9

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      .+.+.|.+++|+|++++|++++.|+
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~  191 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQAN  191 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGT
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCC
Confidence            5677999999999999999988775

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=87.40  E-value=0.82  Score=28.06  Aligned_cols=22  Identities=23%  Similarity=0.193  Sum_probs=18.9

Q ss_pred             CCCeEEEEEcCCCCeEEEEecc
Q 045898           26 SDSVSSLCFSPKANILVATSWD   47 (49)
Q Consensus        26 ~D~IS~l~Fsp~~~~La~sSWD   47 (49)
                      ...+..++|+|++++|++++++
T Consensus       192 g~~p~~~~~spdg~~l~v~~~~  213 (365)
T 1jof_A          192 GDHPRWVAMHPTGNYLYALMEA  213 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCCEeEECCCCCEEEEEECC
Confidence            6789999999999999887753

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=86.29  E-value=1.2  Score=31.44  Aligned_cols=25  Identities=8%  Similarity=-0.024  Sum_probs=21.7

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      .+...|..++|||++++|++++.|+
T Consensus       376 ~~~~~~~~~~~SpDG~~la~~~~~~  400 (1045)
T 1k32_A          376 ENLGNVFAMGVDRNGKFAVVANDRF  400 (1045)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTS
T ss_pred             CCccceeeeEECCCCCEEEEECCCC
Confidence            5668899999999999999988764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=85.85  E-value=0.48  Score=31.46  Aligned_cols=19  Identities=21%  Similarity=0.516  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCeEEEEeccC
Q 045898           30 SSLCFSPKANILVATSWDN   48 (49)
Q Consensus        30 S~l~Fsp~~~~La~sSWD~   48 (49)
                      .+++|||+|+.||.++.|.
T Consensus       172 ~~~~wSPDG~~la~~~~d~  190 (719)
T 1z68_A          172 YALWWSPNGKFLAYAEFND  190 (719)
T ss_dssp             CCEEECTTSSEEEEEEEEC
T ss_pred             ccEEECCCCCEEEEEEECC
Confidence            5899999999999999873

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=85.81  E-value=1.4  Score=27.46  Aligned_cols=30  Identities=17%  Similarity=0.356  Sum_probs=20.8

Q ss_pred             eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+.....+.+.|.+|+|  ++++|++++.|++
T Consensus       328 ~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~  357 (435)
T 1p22_A          328 CLRVLEGHEELVRCIRF--DNKRIVSGAYDGK  357 (435)
T ss_dssp             EEEEECCCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred             EEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc
Confidence            34444567778888888  6677888887763

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=85.09  E-value=0.94  Score=26.92  Aligned_cols=18  Identities=17%  Similarity=0.351  Sum_probs=16.1

Q ss_pred             eEEEEEcCCCCeEEEEec
Q 045898           29 VSSLCFSPKANILVATSW   46 (49)
Q Consensus        29 IS~l~Fsp~~~~La~sSW   46 (49)
                      |..++|||+++.|+.++.
T Consensus       106 ~~~~~wspdg~~l~~~~~  123 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGF  123 (347)
T ss_dssp             EEEEEECTTSSEEEEEEE
T ss_pred             ccceeECCCCCEEEEEEc
Confidence            999999999998888764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=85.03  E-value=1.9  Score=25.73  Aligned_cols=23  Identities=17%  Similarity=0.196  Sum_probs=17.4

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEe
Q 045898           23 QPPSDSVSSLCFSPKANILVATS   45 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sS   45 (49)
                      .++...+..++|+|++++|++++
T Consensus       183 ~~~g~~p~~~~~spdg~~l~v~~  205 (347)
T 3hfq_A          183 MEAGFGPRHLVFSPDGQYAFLAG  205 (347)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEE
T ss_pred             cCCCCCCceEEECCCCCEEEEEe
Confidence            34556788999999999776643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=84.72  E-value=2.3  Score=26.35  Aligned_cols=31  Identities=23%  Similarity=0.201  Sum_probs=22.6

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+.....+.+.|.+++|+  +++|++++.|++
T Consensus       150 ~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~  180 (445)
T 2ovr_B          150 KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRT  180 (445)
T ss_dssp             CEEEECCCCSSCEEEEEEE--TTEEEEEETTSC
T ss_pred             cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCe
Confidence            3344455778889999997  568888888864

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=84.47  E-value=1.3  Score=27.11  Aligned_cols=22  Identities=14%  Similarity=0.400  Sum_probs=18.5

Q ss_pred             CCCCeEEEEEcCCCCeEEEEec
Q 045898           25 PSDSVSSLCFSPKANILVATSW   46 (49)
Q Consensus        25 p~D~IS~l~Fsp~~~~La~sSW   46 (49)
                      ....+..++|+|++++|+++..
T Consensus       143 ~~~~~~~~~~spdG~~l~~~~~  164 (365)
T 1jof_A          143 ENTGIHGMVFDPTETYLYSADL  164 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEET
T ss_pred             CCCcceEEEECCCCCEEEEEcC
Confidence            4578999999999998888765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=84.39  E-value=1.6  Score=25.65  Aligned_cols=24  Identities=13%  Similarity=0.217  Sum_probs=18.8

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEecc
Q 045898           24 PPSDSVSSLCFSPKANILVATSWD   47 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD   47 (49)
                      ++...+..++|+|++++|+++++.
T Consensus       173 ~~~~~~~~~~~spdg~~l~v~~~~  196 (331)
T 3u4y_A          173 SGGTRPFNITFTPDGNFAFVANLI  196 (331)
T ss_dssp             CSSSSEEEEEECTTSSEEEEEETT
T ss_pred             cCCCCccceEECCCCCEEEEEeCC
Confidence            445778999999999977776653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=84.38  E-value=1.1  Score=29.35  Aligned_cols=29  Identities=17%  Similarity=0.417  Sum_probs=22.0

Q ss_pred             EecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           20 EVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      .+...+...+..++|||+++++++++.|+
T Consensus       235 ~l~~~~~~~~~~~~~spdg~l~~~~~~~~  263 (662)
T 3azo_A          235 TLLGGPEEAIAQAEWAPDGSLIVATDRTG  263 (662)
T ss_dssp             EEEEETTBCEEEEEECTTSCEEEEECTTS
T ss_pred             EeCCCCCceEcceEECCCCeEEEEECCCC
Confidence            34444567899999999999777777664

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=83.05  E-value=1.3  Score=26.70  Aligned_cols=23  Identities=22%  Similarity=0.302  Sum_probs=17.5

Q ss_pred             CCCeEEEEEcCCCCeE-EEEeccC
Q 045898           26 SDSVSSLCFSPKANIL-VATSWDN   48 (49)
Q Consensus        26 ~D~IS~l~Fsp~~~~L-a~sSWD~   48 (49)
                      ...|.+++|+|++++| ++++.|+
T Consensus        31 ~~~~~~~~~s~dg~~l~~~~~~d~   54 (391)
T 1l0q_A           31 GSNPMGAVISPDGTKVYVANAHSN   54 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGT
T ss_pred             CCCcceEEECCCCCEEEEECCCCC
Confidence            3568999999999877 5555664

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=83.05  E-value=0.87  Score=29.59  Aligned_cols=22  Identities=14%  Similarity=0.057  Sum_probs=18.4

Q ss_pred             CCeEEEEEcCCCCeEEEEec-cC
Q 045898           27 DSVSSLCFSPKANILVATSW-DN   48 (49)
Q Consensus        27 D~IS~l~Fsp~~~~La~sSW-D~   48 (49)
                      ..|.+|+|||+|+.||.+|- |+
T Consensus        22 ~~~~~~~~~~DG~~la~~s~~~g   44 (582)
T 3o4h_A           22 VEKYSLQGVVDGDKLLVVGFSEG   44 (582)
T ss_dssp             SCEEEEEEEETTTEEEEEEEETT
T ss_pred             cchheeecCCCCCeEEEEEccCC
Confidence            35999999999999998775 54

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=82.70  E-value=2.6  Score=25.35  Aligned_cols=19  Identities=21%  Similarity=0.314  Sum_probs=15.8

Q ss_pred             CCeEEEEEcCCCCeEEEEe
Q 045898           27 DSVSSLCFSPKANILVATS   45 (49)
Q Consensus        27 D~IS~l~Fsp~~~~La~sS   45 (49)
                      ..|.+++|+|++++|++++
T Consensus        74 ~~v~~~~~spdg~~l~~~~   92 (391)
T 1l0q_A           74 SSPQGVAVSPDGKQVYVTN   92 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEE
T ss_pred             CCccceEECCCCCEEEEEE
Confidence            4899999999999776554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=81.77  E-value=3.1  Score=24.10  Aligned_cols=24  Identities=8%  Similarity=0.205  Sum_probs=18.3

Q ss_pred             cCCCCCCeEEEEEcCCCCeEEEEe
Q 045898           22 SQPPSDSVSSLCFSPKANILVATS   45 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~~La~sS   45 (49)
                      ..++...+..++|+|++++|++++
T Consensus       173 ~~~~~~~~~~~~~~pdg~~l~~~~  196 (343)
T 1ri6_A          173 TTVEGAGPRHMVFHPNEQYAYCVN  196 (343)
T ss_dssp             ECSTTCCEEEEEECTTSSEEEEEE
T ss_pred             ccCCCCCcceEEECCCCCEEEEEe
Confidence            334557889999999999776655

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=81.69  E-value=1.9  Score=26.93  Aligned_cols=18  Identities=11%  Similarity=0.218  Sum_probs=16.6

Q ss_pred             eEEEEEcCCCCeEEEEec
Q 045898           29 VSSLCFSPKANILVATSW   46 (49)
Q Consensus        29 IS~l~Fsp~~~~La~sSW   46 (49)
                      +..|+|+|++++|.+++|
T Consensus       307 p~~ia~spdg~~l~v~n~  324 (361)
T 2oiz_A          307 ALSMTIDQQRNLMLTLDG  324 (361)
T ss_dssp             CCEEEEETTTTEEEEECS
T ss_pred             eeEEEECCCCCEEEEeCC
Confidence            899999999999998876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=81.27  E-value=1.9  Score=25.34  Aligned_cols=24  Identities=17%  Similarity=0.230  Sum_probs=19.8

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeccC
Q 045898           25 PSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        25 p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      +...+..++|+|+++.|++++.|+
T Consensus       183 ~~~~~~~~~~s~dg~~l~~~~~~~  206 (353)
T 3vgz_A          183 TGKMSTGLALDSEGKRLYTTNADG  206 (353)
T ss_dssp             CCTTCCCCEEETTTTEEEEECTTS
T ss_pred             CCCccceEEECCCCCEEEEEcCCC
Confidence            455688999999999999887764

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=80.78  E-value=1.4  Score=26.50  Aligned_cols=29  Identities=14%  Similarity=0.144  Sum_probs=20.8

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEecc
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWD   47 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD   47 (49)
                      ..+...+.+.+..++|||+++.|+.++.|
T Consensus        73 ~~lt~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           73 TQLTEGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             EECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             EEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence            34444555566578999999999887754

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=80.24  E-value=1.3  Score=26.44  Aligned_cols=22  Identities=14%  Similarity=0.244  Sum_probs=17.5

Q ss_pred             CCCeEEEEEcCCCCeEEEEecc
Q 045898           26 SDSVSSLCFSPKANILVATSWD   47 (49)
Q Consensus        26 ~D~IS~l~Fsp~~~~La~sSWD   47 (49)
                      ...|..++|||+++.|+..+.+
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~  258 (396)
T 3c5m_A          237 GESCTHEFWIPDGSAMAYVSYF  258 (396)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEE
T ss_pred             CccccceEECCCCCEEEEEecC
Confidence            3468899999999988777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	49
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-09

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 2e-09
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDN 48
          + +++ Q P D +S +   P  ++L+ TSWD 
Sbjct: 2  QIVQIEQAPKDYISDIKIIPSKSLLLITSWDG 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	49
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	98.92
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.06
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.87
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.81
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.56
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.53
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.52
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.49
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.48
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.21
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.19
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.92
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.84
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	96.82
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.79
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	96.77
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.64
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	96.64
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.5
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	96.45
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.35
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	96.31
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.16
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	96.11
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.09
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	96.04
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	95.73
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	95.71
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	95.53
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	95.51
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	95.34
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	95.33
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	95.16
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	95.06
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	94.54
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	93.41
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	92.44
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	92.36
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	90.43
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	90.24
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	88.96
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	87.27
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	86.36
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	85.3
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	83.26
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	81.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	80.63

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=3.5e-10  Score=64.20  Aligned_cols=33  Identities=30%  Similarity=0.672  Sum_probs=30.8

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+++.+.|.|+|++|+|||++++||++|+|++
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~   34 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGS   34 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCe
Confidence            568999999999999999999999999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.06  E-value=3.1e-06  Score=48.47  Aligned_cols=32  Identities=13%  Similarity=0.159  Sum_probs=28.6

Q ss_pred             eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      -..+..+|++.|++|+|+|++++|+++|.|++
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~   35 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGH   35 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCe
Confidence            35678899999999999999999999999874

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=7.9e-06  Score=45.41  Aligned_cols=28  Identities=21%  Similarity=0.312  Sum_probs=25.5

Q ss_pred             cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           22 SQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+|.+.|.+|+|+|++++|+++|.|++
T Consensus        13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~   40 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVFSVMVSASEDAT   40 (317)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSC
T ss_pred             EcCCCCCeEEEEEcCCCCEEEEEeCCCe
Confidence            3579999999999999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.81  E-value=1.4e-05  Score=45.33  Aligned_cols=33  Identities=12%  Similarity=0.248  Sum_probs=28.3

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +......+|.+.|.+|+|+|++++||++|.|++
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~   78 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGK   78 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCc
Confidence            344556789999999999999999999999973

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.56  E-value=6.8e-05  Score=42.37  Aligned_cols=33  Identities=21%  Similarity=0.274  Sum_probs=28.0

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+.....+.+.|.+|+|+|++++|+++|.|++
T Consensus       303 ~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~  335 (340)
T d1tbga_         303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             cEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCE
Confidence            444555678899999999999999999999984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.53  E-value=5.5e-05  Score=44.93  Aligned_cols=33  Identities=12%  Similarity=0.069  Sum_probs=27.8

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ....+...+.+.|.+++|+|++++||+++.|++
T Consensus        49 ~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~   81 (311)
T d1nr0a1          49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN   81 (311)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceeEEEcCCCCCEEEEEEeCCCCeEeccccCce
Confidence            344455678999999999999999999999973

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=4.2e-05  Score=42.34  Aligned_cols=33  Identities=24%  Similarity=0.272  Sum_probs=27.5

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+.....+.+.|.+|+|+|++++|+++|.|++
T Consensus       280 ~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~  312 (317)
T d1vyhc1         280 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT  312 (317)
T ss_dssp             CCCEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe
Confidence            334445578899999999999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=3.8e-05  Score=44.88  Aligned_cols=24  Identities=17%  Similarity=0.252  Sum_probs=21.5

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      .|++.|.+|+|||++++||+|+ |+
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~   83 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NK   83 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BS
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CC
Confidence            4889999999999999999987 65

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.48  E-value=3.9e-05  Score=46.24  Aligned_cols=27  Identities=30%  Similarity=0.486  Sum_probs=24.4

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..|.+.|.+|+|+|++++|+++|+|++
T Consensus       286 ~gH~~~V~~l~fspd~~~l~S~s~D~~  312 (393)
T d1sq9a_         286 FAHSSWVMSLSFNDSGETLCSAGWDGK  312 (393)
T ss_dssp             BSBSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             ecccCceeeeccCCCCCeeEEECCCCE
Confidence            368899999999999999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.21  E-value=0.00021  Score=42.60  Aligned_cols=31  Identities=16%  Similarity=0.310  Sum_probs=26.2

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.....+.+.|.+|+|+|++++|+++|.|++
T Consensus        44 ~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~   74 (371)
T d1k8kc_          44 VHELKEHNGQVTGVDWAPDSNRIVTCGTDRN   74 (371)
T ss_dssp             EEEEECCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             EEEecCCCCCEEEEEECCCCCEEEEEECCCe
Confidence            3334578999999999999999999999874

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.00019  Score=43.11  Aligned_cols=26  Identities=31%  Similarity=0.415  Sum_probs=23.0

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ..+.+.|.+|+|||++++|+++|.|+
T Consensus       228 ~~h~~~V~~l~~spdg~~l~sgs~D~  253 (393)
T d1sq9a_         228 INNSNSIRSVKFSPQGSLLAIAHDSN  253 (393)
T ss_dssp             -CCCCCEEEEEECSSTTEEEEEEEET
T ss_pred             ccccceEEEcccccccceeeeecCCC
Confidence            35789999999999999999999886

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0004  Score=40.63  Aligned_cols=27  Identities=11%  Similarity=0.090  Sum_probs=23.8

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+++.|.+|+|+|++++|++++.|++
T Consensus        94 ~~h~~~I~~v~~s~dg~~l~s~~~dg~  120 (337)
T d1gxra_          94 LNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             SCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEeecccc
Confidence            357789999999999999999999873

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00062  Score=39.77  Aligned_cols=26  Identities=31%  Similarity=0.197  Sum_probs=23.4

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+.+.|.+++|+|++++|+++|.|++
T Consensus       304 ~~~~~v~~~~~s~d~~~l~t~s~D~~  329 (337)
T d1gxra_         304 KESSSVLSCDISVDDKYIVTGSGDKK  329 (337)
T ss_dssp             ECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence            36789999999999999999999974

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.0008  Score=37.19  Aligned_cols=25  Identities=28%  Similarity=0.369  Sum_probs=21.8

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           25 PSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        25 p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +...|.+|+|+|++++||+++.|++
T Consensus       250 ~~~~v~~l~~sp~~~~lasg~~Dg~  274 (342)
T d1yfqa_         250 LAYPVNSIEFSPRHKFLYTAGSDGI  274 (342)
T ss_dssp             SCCCEEEEEECTTTCCEEEEETTSC
T ss_pred             ccccceeEEecCCccEEEEECCCCE
Confidence            4457899999999999999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.79  E-value=0.00087  Score=37.84  Aligned_cols=27  Identities=26%  Similarity=0.319  Sum_probs=23.7

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ..+.+.|.+|+|+|++++|++++.|++
T Consensus       221 ~~h~~~v~~l~~s~~~~~l~sgs~dg~  247 (299)
T d1nr0a2         221 TFHTAKVACVSWSPDNVRLATGSLDNS  247 (299)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccceEEEcCCCE
Confidence            346789999999999999999999874

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.77  E-value=0.00058  Score=40.32  Aligned_cols=25  Identities=32%  Similarity=0.397  Sum_probs=22.6

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      .+.+.|.+|+|+|++++|+++|.|+
T Consensus       236 ~h~~~V~~~~~s~~~~~l~tgs~Dg  260 (311)
T d1nr0a1         236 AHSGSVFGLTWSPDGTKIASASADK  260 (311)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccCCCCCEEEEEeCCC
Confidence            3578899999999999999999887

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.0018  Score=36.40  Aligned_cols=31  Identities=16%  Similarity=0.255  Sum_probs=25.6

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .++..+....|++|+|+|++++|++++-|+.
T Consensus       155 ~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~  185 (287)
T d1pgua2         155 FDLKTPLRAKPSYISISPSETYIAAGDVMGK  185 (287)
T ss_dssp             EECSSCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eeeeeccCCceeEEEeccCcccccccccccc
Confidence            4445566788999999999999999998863

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.0012  Score=38.25  Aligned_cols=26  Identities=27%  Similarity=0.478  Sum_probs=22.8

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           24 PPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        24 ~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+...|.+|+|+|++++|++++.|++
T Consensus       119 ~~~~~V~~l~~s~~~~~l~s~~~dg~  144 (388)
T d1erja_         119 SSDLYIRSVCFSPDGKFLATGAEDRL  144 (388)
T ss_dssp             CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred             CCCCCEEEEEECCCCCcceecccccc
Confidence            45678999999999999999999874

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.50  E-value=0.0023  Score=37.91  Aligned_cols=30  Identities=30%  Similarity=0.439  Sum_probs=25.4

Q ss_pred             EecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           20 EVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        20 ~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ....++.+.|.+++|+|++++|++++.|++
T Consensus       135 ~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_         135 HIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             EECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccccccccccccccceeccccCcE
Confidence            334567899999999999999999998874

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.45  E-value=0.0022  Score=36.35  Aligned_cols=25  Identities=4%  Similarity=-0.032  Sum_probs=21.5

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEecc
Q 045898           23 QPPSDSVSSLCFSPKANILVATSWD   47 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~sSWD   47 (49)
                      -++.+.|.+++|||++++|++++-|
T Consensus        39 ~~~~~~v~~~~~spDg~~l~~~~~~   63 (360)
T d1k32a3          39 VPEPLRIRYVRRGGDTKVAFIHGTR   63 (360)
T ss_dssp             CSCCSCEEEEEECSSSEEEEEEEET
T ss_pred             ccCCCCEEEEEECCCCCEEEEEEcC
Confidence            3678999999999999999887755

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.00085  Score=37.30  Aligned_cols=25  Identities=12%  Similarity=0.003  Sum_probs=22.2

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           25 PSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        25 p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +...|.+|+|+|++.+|++++.||+
T Consensus       304 ~~~~v~~v~~s~~~~~la~g~~dGt  328 (342)
T d2ovrb2         304 SGGVVWRIRASNTKLVCAVGSRNGT  328 (342)
T ss_dssp             GTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCC
Confidence            4578999999999999999998874

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.31  E-value=0.0015  Score=39.77  Aligned_cols=23  Identities=17%  Similarity=0.143  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCeEEEEeccCC
Q 045898           27 DSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        27 D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+..|+|||+|++|+++++|++
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~   84 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDAR   84 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSE
T ss_pred             CCeeEEEECCCCCEEEEEeCCCC
Confidence            57999999999999999999873

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.0038  Score=34.99  Aligned_cols=33  Identities=24%  Similarity=0.282  Sum_probs=27.0

Q ss_pred             CceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           16 NKSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        16 ~~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      .+.++....+.+.|++|+|+|++ .|+++++|++
T Consensus       248 ~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~  280 (287)
T d1pgua2         248 MKIIKALNAHKDGVNNLLWETPS-TLVSSGADAC  280 (287)
T ss_dssp             TCCEEETTSSTTCEEEEEEEETT-EEEEEETTSC
T ss_pred             CeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCe
Confidence            45677778899999999999986 4778888974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.0043  Score=34.48  Aligned_cols=32  Identities=25%  Similarity=0.181  Sum_probs=25.2

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+.....+.+.|.+|+|+|+ ++|++++.|++
T Consensus        44 ~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~   75 (355)
T d1nexb2          44 KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRT   75 (355)
T ss_dssp             EEEEEEECCSSCEEEEEEETT-TEEEEEETTCC
T ss_pred             cEEEEEECCCCCEEEEEEcCC-CEEEEEecccc
Confidence            344445678999999999985 57899999874

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0026  Score=35.22  Aligned_cols=31  Identities=32%  Similarity=0.321  Sum_probs=23.1

Q ss_pred             eEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           18 SIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        18 ~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ...+...|++.|-+ +|++++++||++|.|++
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~   38 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNT   38 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSC
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCCe
Confidence            34456689998744 35667899999999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.04  E-value=0.0046  Score=36.07  Aligned_cols=25  Identities=24%  Similarity=0.320  Sum_probs=20.9

Q ss_pred             CCCCeEEEEEcCC--CCeEEEEeccCC
Q 045898           25 PSDSVSSLCFSPK--ANILVATSWDNQ   49 (49)
Q Consensus        25 p~D~IS~l~Fsp~--~~~La~sSWD~~   49 (49)
                      +...|.+++|+|+  +++||+++.|++
T Consensus        62 ~~~~v~~v~fsP~~~g~~lasgs~Dg~   88 (325)
T d1pgua1          62 GSSVVTTVKFSPIKGSQYLCSGDESGK   88 (325)
T ss_dssp             TTSCEEEEEECSSTTCCEEEEEETTSE
T ss_pred             CCCCEEEEEEeeCCCCCEEEEEeCCCC
Confidence            4688999999995  579999998873

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.73  E-value=0.01  Score=33.41  Aligned_cols=32  Identities=9%  Similarity=-0.028  Sum_probs=26.2

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ...+....+...|.+++|+|++++|++++.|+
T Consensus        76 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~  107 (360)
T d1k32a3          76 GKAEKFEENLGNVFAMGVDRNGKFAVVANDRF  107 (360)
T ss_dssp             CCEEECCCCCCSEEEEEECTTSSEEEEEETTS
T ss_pred             CcEEEeeCCCceEEeeeecccccccceecccc
Confidence            33444557789999999999999999998876

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0081  Score=32.40  Aligned_cols=29  Identities=24%  Similarity=0.291  Sum_probs=16.6

Q ss_pred             EEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           19 IEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        19 ~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.....+..+|.+|.|  ++++||++|.|++
T Consensus         8 i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~   36 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQKIVSGLRDNT   36 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSC
T ss_pred             EeccCCCCCCEEEEEE--cCCEEEEEeCCCe
Confidence            3334455566666543  5666777766653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.53  E-value=0.0048  Score=34.48  Aligned_cols=24  Identities=13%  Similarity=-0.040  Sum_probs=20.8

Q ss_pred             CCCeEEEEEcCCCCeEEEEeccCC
Q 045898           26 SDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        26 ~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ...+.+|+|+|++++|+++++|++
T Consensus       279 ~~~~~~~~~s~dG~~l~v~~~~~~  302 (337)
T d1pbyb_         279 PHSYYSVNVSTDGSTVWLGGALGD  302 (337)
T ss_dssp             SSCCCEEEECTTSCEEEEESBSSE
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCc
Confidence            467889999999999999998863

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=95.51  E-value=0.0043  Score=34.78  Aligned_cols=22  Identities=18%  Similarity=0.135  Sum_probs=20.0

Q ss_pred             CCeEEEEEcCCCCeEEEEeccC
Q 045898           27 DSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        27 D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ..+.+|+|||++++|+++++|+
T Consensus       292 ~~~~~va~s~DG~~l~v~~~d~  313 (346)
T d1jmxb_         292 HTYYCVAFDKKGDKLYLGGTFN  313 (346)
T ss_dssp             SCCCEEEECSSSSCEEEESBSS
T ss_pred             CCEEEEEEcCCCCEEEEEeCCC
Confidence            4688999999999999999986

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.0075  Score=33.88  Aligned_cols=22  Identities=18%  Similarity=0.223  Sum_probs=18.2

Q ss_pred             CCCCeEEEEEcCCCCeEEEEec
Q 045898           25 PSDSVSSLCFSPKANILVATSW   46 (49)
Q Consensus        25 p~D~IS~l~Fsp~~~~La~sSW   46 (49)
                      ..+.|..|+|||++++|.+++.
T Consensus        35 ~~~~v~~la~spDG~~L~v~~~   56 (333)
T d1ri6a_          35 VPGQVQPMVVSPDKRYLYVGVR   56 (333)
T ss_dssp             CSSCCCCEEECTTSSEEEEEET
T ss_pred             CCCCEeEEEEeCCCCEEEEEEC
Confidence            4478999999999999876665

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.019  Score=30.84  Aligned_cols=31  Identities=16%  Similarity=0.255  Sum_probs=24.9

Q ss_pred             ceEEecCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           17 KSIEVSQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        17 ~~~~l~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      +.+.....+.+.|.+|+|  ++++|++++.|++
T Consensus        46 ~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~   76 (293)
T d1p22a2          46 ECKRILTGHTGSVLCLQY--DERVIITGSSDST   76 (293)
T ss_dssp             CEEEEECCCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred             cEEEEEecCCCCEeeeec--ccceeeccccccc
Confidence            445556779999999988  6789999999974

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.16  E-value=0.0078  Score=37.26  Aligned_cols=22  Identities=18%  Similarity=0.117  Sum_probs=20.2

Q ss_pred             CCeEEEEEcCCCCeEEEEeccC
Q 045898           27 DSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        27 D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ..+..|+|||+|++|++++.|+
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg   83 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDG   83 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTS
T ss_pred             CCeeEEEECCCCCEEEEEcCCC
Confidence            5799999999999999999886

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.06  E-value=0.01  Score=32.82  Aligned_cols=27  Identities=26%  Similarity=0.299  Sum_probs=22.2

Q ss_pred             cCCCCCCeEEEEEcCCCCeEEEEeccCC
Q 045898           22 SQPPSDSVSSLCFSPKANILVATSWDNQ   49 (49)
Q Consensus        22 ~~~p~D~IS~l~Fsp~~~~La~sSWD~~   49 (49)
                      ...+.+.|.+|+|+|+ .+|+++|.|++
T Consensus       320 ~~~~~~~V~~v~~~~~-~~~~~~s~dg~  346 (355)
T d1nexb2         320 ILKDADQIWSVNFKGK-TLVAAVEKDGQ  346 (355)
T ss_dssp             TTTTCSEEEEEEEETT-EEEEEEESSSC
T ss_pred             ecCCCCCEEEEEEcCC-eEEEEEECCCc
Confidence            4567899999999986 57888899974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.54  E-value=0.03  Score=32.46  Aligned_cols=27  Identities=19%  Similarity=0.369  Sum_probs=22.3

Q ss_pred             CCCCCCeEEEEEcCC-CCeEEEEeccCC
Q 045898           23 QPPSDSVSSLCFSPK-ANILVATSWDNQ   49 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~-~~~La~sSWD~~   49 (49)
                      ..+.+.|.+|+|+|+ +++|++++-|++
T Consensus       202 ~~~~~~v~~v~~~pd~~~~l~s~~~d~~  229 (325)
T d1pgua1         202 HKQGSFVRDVEFSPDSGEFVITVGSDRK  229 (325)
T ss_dssp             SCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred             cCCCCccEEeeeccccceeccccccccc
Confidence            456788999999997 578898888874

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.41  E-value=0.037  Score=34.05  Aligned_cols=23  Identities=13%  Similarity=0.187  Sum_probs=20.0

Q ss_pred             CCCCeEEEEEcCCCCeEEEEecc
Q 045898           25 PSDSVSSLCFSPKANILVATSWD   47 (49)
Q Consensus        25 p~D~IS~l~Fsp~~~~La~sSWD   47 (49)
                      +...|-.++|||+|++|++++|.
T Consensus       366 ~~~~v~~~~fS~DG~~v~~S~~~  388 (432)
T d1qksa2         366 GQPRVVQGEFNKDGTEVWFSVWN  388 (432)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEEC
T ss_pred             CCCcEEEeEECCCCCEEEEEEec
Confidence            44678899999999999999995

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.44  E-value=0.081  Score=31.71  Aligned_cols=22  Identities=9%  Similarity=0.314  Sum_probs=18.0

Q ss_pred             CCCeEEEEEcCCCCeEEEEecc
Q 045898           26 SDSVSSLCFSPKANILVATSWD   47 (49)
Q Consensus        26 ~D~IS~l~Fsp~~~~La~sSWD   47 (49)
                      ...|-.++|||+|+.|++++|.
T Consensus       361 ~~rv~~~~fSpDGk~i~vs~~~  382 (426)
T d1hzua2         361 AKRVVQPEYNKRGDEVWFSVWN  382 (426)
T ss_dssp             CCCEEEEEECSSSSEEEEEECC
T ss_pred             CccEEEEEECCCCCEEEEEEec
Confidence            3457788999999999888874

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=92.36  E-value=0.08  Score=28.90  Aligned_cols=22  Identities=5%  Similarity=0.057  Sum_probs=17.2

Q ss_pred             CCCeEEEEEcCCCCeEEEEecc
Q 045898           26 SDSVSSLCFSPKANILVATSWD   47 (49)
Q Consensus        26 ~D~IS~l~Fsp~~~~La~sSWD   47 (49)
                      ...+.+|+|||++++|.+++++
T Consensus       243 ~~~~~~va~spdg~~l~va~~~  264 (301)
T d1l0qa2         243 GPDPAGIAVTPDGKKVYVALSF  264 (301)
T ss_dssp             CSSEEEEEECTTSSEEEEEETT
T ss_pred             CCCEEEEEEeCCCCEEEEEECC
Confidence            3568899999999988666653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=90.43  E-value=0.13  Score=28.47  Aligned_cols=24  Identities=8%  Similarity=0.230  Sum_probs=19.6

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeccC
Q 045898           25 PSDSVSSLCFSPKANILVATSWDN   48 (49)
Q Consensus        25 p~D~IS~l~Fsp~~~~La~sSWD~   48 (49)
                      ....+..|+|+|++++|+++++++
T Consensus        81 ~~~~p~~l~~spDg~~l~v~~~~~  104 (333)
T d1ri6a_          81 LPGSLTHISTDHQGQFVFVGSYNA  104 (333)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTT
T ss_pred             cCCCceEEEEcCCCCEEeecccCC
Confidence            445677899999999999988764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=90.24  E-value=0.17  Score=27.91  Aligned_cols=26  Identities=8%  Similarity=0.080  Sum_probs=18.9

Q ss_pred             CCCCCCeEEEEEcCCCCeEEE-EeccC
Q 045898           23 QPPSDSVSSLCFSPKANILVA-TSWDN   48 (49)
Q Consensus        23 ~~p~D~IS~l~Fsp~~~~La~-sSWD~   48 (49)
                      -+....+.+|+|+|++++|.+ ++.|+
T Consensus        36 ~~~~~~p~~l~~spDG~~l~v~~~~~~   62 (346)
T d1jmxb_          36 MPDKFGPGTAMMAPDNRTAYVLNNHYG   62 (346)
T ss_dssp             CSSCCSSCEEEECTTSSEEEEEETTTT
T ss_pred             cCCCCCcceEEECCCCCEEEEEECCCC
Confidence            345678899999999987744 44543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=88.96  E-value=0.23  Score=26.92  Aligned_cols=20  Identities=10%  Similarity=0.107  Sum_probs=15.9

Q ss_pred             CCeEEEEEcCCCCeEEEEec
Q 045898           27 DSVSSLCFSPKANILVATSW   46 (49)
Q Consensus        27 D~IS~l~Fsp~~~~La~sSW   46 (49)
                      +.+..|+|||++++|++++.
T Consensus        32 ~~p~~va~spdG~~l~v~~~   51 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANA   51 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEG
T ss_pred             CCceEEEEeCCCCEEEEEEC
Confidence            56789999999998865543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=87.27  E-value=0.43  Score=25.91  Aligned_cols=23  Identities=9%  Similarity=0.121  Sum_probs=18.6

Q ss_pred             CCCCeEEEEEcCCCCeEEEEecc
Q 045898           25 PSDSVSSLCFSPKANILVATSWD   47 (49)
Q Consensus        25 p~D~IS~l~Fsp~~~~La~sSWD   47 (49)
                      ....+...+|||+|+.||-.+|.
T Consensus        39 ~~~~~~~p~~SPDG~~iaf~~~~   61 (281)
T d1k32a2          39 NLGVINNARFFPDGRKIAIRVMR   61 (281)
T ss_dssp             SSSEEEEEEECTTSSEEEEEEEE
T ss_pred             CCCcccCEEECCCCCEEEEEEee
Confidence            34578899999999999877664

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.36  E-value=0.31  Score=29.19  Aligned_cols=20  Identities=15%  Similarity=0.376  Sum_probs=17.1

Q ss_pred             CCCeEEEEEcCCCCeEEEEe
Q 045898           26 SDSVSSLCFSPKANILVATS   45 (49)
Q Consensus        26 ~D~IS~l~Fsp~~~~La~sS   45 (49)
                      ...|.+++|||+++.||.++
T Consensus        61 ~~~i~~~~~SpDg~~i~~~~   80 (470)
T d2bgra1          61 GHSINDYSISPDGQFILLEY   80 (470)
T ss_dssp             SSCCCEEEECTTSSEEEEEE
T ss_pred             cCccceeEECCCCCEEEEEE
Confidence            36799999999999888764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=85.30  E-value=0.27  Score=27.55  Aligned_cols=22  Identities=18%  Similarity=0.320  Sum_probs=15.4

Q ss_pred             CCeEEEEEcCCCC-eE-EEEeccC
Q 045898           27 DSVSSLCFSPKAN-IL-VATSWDN   48 (49)
Q Consensus        27 D~IS~l~Fsp~~~-~L-a~sSWD~   48 (49)
                      ..+.+|+|||+++ +| +++++|+
T Consensus       300 ~~~~~~a~spDG~~~l~v~~~~d~  323 (355)
T d2bbkh_         300 HEIDSINVSQDEKPLLYALSTGDK  323 (355)
T ss_dssp             EEECEEEECCSSSCEEEEEETTTT
T ss_pred             CCEEEEEEcCCCCeEEEEEECCCC
Confidence            4578999999997 34 4455554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.26  E-value=0.78  Score=24.91  Aligned_cols=22  Identities=18%  Similarity=0.386  Sum_probs=17.4

Q ss_pred             CCCeEEEEEcCCCCeEEEEecc
Q 045898           26 SDSVSSLCFSPKANILVATSWD   47 (49)
Q Consensus        26 ~D~IS~l~Fsp~~~~La~sSWD   47 (49)
                      .+.|..-+|||+|+.||..+..
T Consensus        38 ~~~~~sP~wSPDGk~IAf~~~~   59 (269)
T d2hqsa1          38 PQPLMSPAWSPDGSKLAYVTFE   59 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECT
T ss_pred             CCceeeeEECCCCCEEEEEEee
Confidence            3557789999999999976544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.90  E-value=1.1  Score=26.67  Aligned_cols=24  Identities=13%  Similarity=0.187  Sum_probs=19.3

Q ss_pred             ecCCCCCCeEEEEEcCCCCeEEEE
Q 045898           21 VSQPPSDSVSSLCFSPKANILVAT   44 (49)
Q Consensus        21 l~~~p~D~IS~l~Fsp~~~~La~s   44 (49)
                      -.....+.+..+.|||+|+.||..
T Consensus       106 ~l~~~~~~~~~~~~SPDG~~ia~~  129 (470)
T d2bgra1         106 TEERIPNNTQWVTWSPVGHKLAYV  129 (470)
T ss_dssp             CSSCCCTTEEEEEECSSTTCEEEE
T ss_pred             ccccCCccccccccccCcceeeEe
Confidence            344567889999999999988864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=80.63  E-value=0.47  Score=25.86  Aligned_cols=22  Identities=14%  Similarity=0.262  Sum_probs=18.5

Q ss_pred             CCCeEEEEEcCCCCeEEEEecc
Q 045898           26 SDSVSSLCFSPKANILVATSWD   47 (49)
Q Consensus        26 ~D~IS~l~Fsp~~~~La~sSWD   47 (49)
                      .+.++.++|+|++++|++++.|
T Consensus       134 ~~~~~~~~~s~dg~~l~~~~~~  155 (337)
T d1pbyb_         134 PRQITMLAWARDGSKLYGLGRD  155 (337)
T ss_dssp             CSSCCCEEECTTSSCEEEESSS
T ss_pred             cCCceEEEEcCCCCEEEEEcCC
Confidence            4668899999999999888755