Citrus Sinensis ID: 045953

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMSMSVM
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELrqlpdntntyksigrtfvlepksvlMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMSMSVM
Flexible Loop (DISEMBL)
msdeanraafqeikgrmientgkmkqvqnqmrnkegekKRAYLTLEElrqlpdntntyksiGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELlqqdpglaqqiMSMSVM
Low Complexity Region (SEG)
MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMSMSVM
Disordered region (IsUnstruct)
********************************************************TYKSIGRTFVL**************************************************************
Disordered Region (DISOPRED)
**DEANRAAFQEIKG****************************TLEELRQLPDNTNTYKSIGRTFVLE******************************************************IMSMS**
Disordered Region (DISEMBL)
********AFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMSMSVM
Disordered Region (DISPRO)
*SDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMSMS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSDEANRAAFQEIKGRMIENTGKxxxxxxxxxxxxxxxxxxxxxxxxxxxxPDNTNTYKSIGRTFVLEPKSVLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDPGLAQQIMSMSVM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
Q9CWM4	122	Prefoldin subunit 1 OS=Mu	yes	no	0.829	0.877	0.345	1e-10
Q3SZE2	122	Prefoldin subunit 1 OS=Bo	yes	no	0.829	0.877	0.345	1e-10
Q5RAM7	122	Prefoldin subunit 1 OS=Po	yes	no	0.829	0.877	0.345	1e-10
O60925	122	Prefoldin subunit 1 OS=Ho	yes	no	0.829	0.877	0.336	6e-10
Q4SPU8	122	Prefoldin subunit 1 OS=Te	N/A	no	0.860	0.909	0.324	9e-09
Q5D016	122	Prefoldin subunit 1 OS=Da	yes	no	0.829	0.877	0.308	3e-08
Q54JS0	115	Probable prefoldin subuni	yes	no	0.852	0.956	0.254	1e-07
Q17827	117	Probable prefoldin subuni	yes	no	0.868	0.957	0.336	6e-07
Q61SU8	117	Probable prefoldin subuni	N/A	no	0.868	0.957	0.344	1e-06

>sp|Q9CWM4|PFD1_MOUSE Prefoldin subunit 1 OS=Mus musculus GN=Pfdn1 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 61/107 (57%)

Query: 7   RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFV 66
           + AF E++ ++I+   K+K    Q+      KK A+LT  E+  L D TN Y+ +GR F+
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113
           L+ K V+ N+  ++ K ++  I  L+  K YLE+   E E N+ E+L
Sbjct: 70  LQSKEVIHNQLLEKQKIAKEKIKELEQKKSYLERSVKEAEDNIREML 116

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.
Mus musculus (taxid: 10090)

>sp|Q3SZE2|PFD1_BOVIN Prefoldin subunit 1 OS=Bos taurus GN=PFDN1 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 60/107 (56%)

Query: 7   RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFV 66
           + AF E++ ++I+   K+K    Q+      KK A+LT  E+  L D TN Y+ +GR F+
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADVQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113
           L+ K  + N+  ++ K +E  I  L+  K YLE+   E E N+ E+L
Sbjct: 70  LQSKEAIHNQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Bos taurus (taxid: 9913)

>sp|Q5RAM7|PFD1_PONAB Prefoldin subunit 1 OS=Pongo abelii GN=PFDN1 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 60/107 (56%)

Query: 7   RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFV 66
           + AF E++ ++I+   K+K    Q+      KK A+LT  E+  L D TN Y+ +GR F+
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113
           L+ K  + N+  ++ K +E  I  L+  K YLE+   E E N+ E+L
Sbjct: 70  LQSKEAIHNQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Pongo abelii (taxid: 9601)

>sp|O60925|PFD1_HUMAN Prefoldin subunit 1 OS=Homo sapiens GN=PFDN1 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 60/107 (56%)

Query: 7   RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFV 66
           + AF E++ ++I+   K+K    Q+      KK A+LT  E+  L D TN Y+ +GR F+
Sbjct: 10  KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query: 67  LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113
           L+ K  + ++  ++ K +E  I  L+  K YLE+   E E N+ E+L
Sbjct: 70  LQSKEAIHSQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Homo sapiens (taxid: 9606)

>sp|Q4SPU8|PFD1_TETNG Prefoldin subunit 1 OS=Tetraodon nigroviridis GN=pfdn1 PE=3 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 57/111 (51%)

Query: 3   DEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIG 62
           DE  + AF E++ ++I+   K +    Q+      +K A LT  E+  LPDNT  Y+ +G
Sbjct: 6   DEELKKAFTELQAKVIDTQQKARLADLQIDQLTKVQKHARLTQTEMASLPDNTRLYEGVG 65

Query: 63  RTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113
           R F+L  K  + N      K ++  +  L+  K YLE+   E E N+ E+L
Sbjct: 66  RMFILRSKEEINNHLTDAQKTADEKVKELEQKKVYLERSVKEAEDNIREML 116

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Tetraodon nigroviridis (taxid: 99883)

>sp|Q5D016|PFD1_DANRE Prefoldin subunit 1 OS=Danio rerio GN=pfdn1 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 59/107 (55%)

Query: 7   RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFV 66
           + AF E++ +M++   K+K    Q+      KK A LT  E+  LP++T  ++  GR F+
Sbjct: 10  KKAFAELQAKMVDTQQKVKLADLQIEQLSRVKKHANLTHGEITSLPESTRMFEGAGRMFI 69

Query: 67  LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113
           L+ K  + N+  ++ K ++  I  L+  K YLE+   + E N+ E+L
Sbjct: 70  LQSKGEISNQLLEKQKTADDKIKELEQKKTYLERSVKDAEDNIREML 116

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Danio rerio (taxid: 7955)

>sp|Q54JS0|PFD1_DICDI Probable prefoldin subunit 1 OS=Dictyostelium discoideum GN=pfdn1 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 63/110 (57%)

Query: 6   NRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTF 65
           ++ AF E + ++   +  +  ++ +++  E ++K+  +T+ EL  L   T TYK++G+ F
Sbjct: 5   DKQAFFETREKLYTLSRSLNIIKQRIQIAENDRKKCLITINELESLSSETKTYKAVGKMF 64

Query: 66  VLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115
           V+ P + L  E +Q+++  E  +  L    +Y++ Q  + E +L EL+++
Sbjct: 65  VISPMTSLKTELKQQVQKDEEDVKGLINQSKYIDAQITDTERSLNELVRK 114

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q17827|PFD1_CAEEL Probable prefoldin subunit 1 OS=Caenorhabditis elegans GN=pfd-1 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 4/116 (3%)

Query: 1   MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKR--AYLTLEELRQLPDNTNTY 58
           M+DE    AF++++ +   N  +M+ VQ +   K   +K   +  T + L  L +N   Y
Sbjct: 1   MADEEISKAFRDLQFKT--NETRMRIVQGEQNKKVNYQKMRISESTKKNLVDLDENLKYY 58

Query: 59  KSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114
           +S+GR F+L  K   ++  E   K S+  I A++  K+YLEK   E E+NL EL+Q
Sbjct: 59  RSVGRMFLLTDKPAEISRHEAEAKQSKEKIEAIEKQKDYLEKGLVEAETNLRELIQ 114

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins (By similarity). Has a role in gonadogenesis.

Caenorhabditis elegans (taxid: 6239)

>sp|Q61SU8|PFD1_CAEBR Probable prefoldin subunit 1 OS=Caenorhabditis briggsae GN=pfd-1 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 4/116 (3%)

Query: 1   MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKR--AYLTLEELRQLPDNTNTY 58
           M+DE    AF++++ +   N  +M+ VQ +   K   +K   +  T   L  L ++   Y
Sbjct: 1   MADEEISKAFRDLQFKT--NETRMRIVQGEQNKKVNHQKMRISESTKRNLIGLNEDLKYY 58

Query: 59  KSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114
           +S+GR F+L  K+  +   E   K S+  I A+   KEYLEK   E ESNL EL+Q
Sbjct: 59  RSVGRMFLLTDKASEIARHETEAKQSKDKIEAIDKQKEYLEKGLVEAESNLRELIQ 114

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. Has a role in gonadogenesis.

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
359484922	129	PREDICTED: probable prefoldin subunit 1	1.0	1.0	0.837	6e-56
284433766	129	prefoldin-related KE2-like protein [Jatr	1.0	1.0	0.821	5e-55
224087357	129	predicted protein [Populus trichocarpa]	1.0	1.0	0.798	4e-54
297736031	129	unnamed protein product [Vitis vinifera]	1.0	1.0	0.821	4e-54
255563876	129	Prefoldin subunit, putative [Ricinus com	1.0	1.0	0.798	2e-53
215769263	129	unnamed protein product [Oryza sativa Ja	0.992	0.992	0.773	4e-53
449470285	129	PREDICTED: probable prefoldin subunit 1-	0.992	0.992	0.796	1e-52
242061480	129	hypothetical protein SORBIDRAFT_04g01675	0.992	0.992	0.75	1e-51
297831758	128	hypothetical protein ARALYDRAFT_480234 [	0.992	1.0	0.781	2e-51
30678386	128	prefoldin 1 [Arabidopsis thaliana] gi|15	0.992	1.0	0.781	7e-51

>gi|359484922|ref|XP_002264879.2| PREDICTED: probable prefoldin subunit 1 [Vitis vinifera]

 Score =  221 bits (564), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 108/129 (83%), Positives = 119/129 (92%)

Query: 1   MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKS 60
           M+DEANR AF EI+G MIE TGK+KQVQNQMRNKEGEKKRA+LTLEELRQL D+TNTYKS
Sbjct: 1   MADEANRTAFMEIQGHMIETTGKLKQVQNQMRNKEGEKKRAFLTLEELRQLSDDTNTYKS 60

Query: 61  IGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLA 120
           IGRTFVLEPKS LM+EQEQ+LKDSE+AIA LQ SKEYLEKQ AEVE+NL ELLQQDPGLA
Sbjct: 61  IGRTFVLEPKSALMSEQEQKLKDSEAAIAGLQTSKEYLEKQMAEVENNLRELLQQDPGLA 120

Query: 121 QQIMSMSVM 129
           +QIMSM+VM
Sbjct: 121 RQIMSMTVM 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284433766|gb|ADB85089.1| prefoldin-related KE2-like protein [Jatropha curcas]

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 106/129 (82%), Positives = 117/129 (90%)

Query: 1   MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKS 60
           M+DE NR AF EI+GRMIE T K+KQ QNQMR KEGEKKRAYLTLEELRQLPD TNTYKS
Sbjct: 1   MADETNRTAFLEIQGRMIETTAKLKQAQNQMRTKEGEKKRAYLTLEELRQLPDETNTYKS 60

Query: 61  IGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLA 120
           IGRTF+LEPK VLM+EQEQ+LKDSE+AIA+LQ SKEYLEKQ AEVE+NL ELLQQDPGLA
Sbjct: 61  IGRTFILEPKPVLMSEQEQKLKDSETAIASLQTSKEYLEKQMAEVENNLRELLQQDPGLA 120

Query: 121 QQIMSMSVM 129
           +QIMSMSV+
Sbjct: 121 RQIMSMSVL 129

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087357|ref|XP_002308134.1| predicted protein [Populus trichocarpa] gi|118482598|gb|ABK93219.1| unknown [Populus trichocarpa] gi|222854110|gb|EEE91657.1| predicted protein [Populus trichocarpa]

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 103/129 (79%), Positives = 118/129 (91%)

Query: 1   MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKS 60
           M+DEANR AF E++GRMIE T K KQVQNQ+R KEGEKKRA+LTLEELRQ+PD+TNTYKS
Sbjct: 1   MADEANRTAFLELQGRMIETTSKFKQVQNQIRTKEGEKKRAFLTLEELRQVPDDTNTYKS 60

Query: 61  IGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLA 120
           IGRTFVLEPKSVLM+EQEQ+LKDSE+AI++LQ SKEYLEK  +EVE+NL ELLQQDP LA
Sbjct: 61  IGRTFVLEPKSVLMSEQEQKLKDSETAISSLQTSKEYLEKHMSEVENNLRELLQQDPALA 120

Query: 121 QQIMSMSVM 129
           +QIMSMSVM
Sbjct: 121 RQIMSMSVM 129

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736031|emb|CBI24069.3| unnamed protein product [Vitis vinifera]

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 106/129 (82%), Positives = 117/129 (90%)

Query: 1   MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKS 60
           M+DEANR AF EI+G MIE TGK+KQVQNQMRNKEGEKKRA+LTLEELRQL D+TNTYKS
Sbjct: 1   MADEANRTAFMEIQGHMIETTGKLKQVQNQMRNKEGEKKRAFLTLEELRQLSDDTNTYKS 60

Query: 61  IGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLA 120
           IG  FVLEPKS LM+EQEQ+LKDSE+AIA LQ SKEYLEKQ AEVE+NL ELLQQDPGLA
Sbjct: 61  IGIRFVLEPKSALMSEQEQKLKDSEAAIAGLQTSKEYLEKQMAEVENNLRELLQQDPGLA 120

Query: 121 QQIMSMSVM 129
           +QIMSM+VM
Sbjct: 121 RQIMSMTVM 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563876|ref|XP_002522938.1| Prefoldin subunit, putative [Ricinus communis] gi|223537832|gb|EEF39449.1| Prefoldin subunit, putative [Ricinus communis]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/129 (79%), Positives = 117/129 (90%)

Query: 1   MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKS 60
           M+D+  R AF EI+GRMIE T K+KQVQNQMR KEGEKKR++LTLEELR LPD+TNTYKS
Sbjct: 1   MADDNIRTAFLEIQGRMIETTAKLKQVQNQMRTKEGEKKRSFLTLEELRHLPDDTNTYKS 60

Query: 61  IGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLA 120
           IGRTFVLEPKSVLM EQEQ+LKDSE+AI++L+ SKEYLEKQ AEVE+NL ELLQQDPGLA
Sbjct: 61  IGRTFVLEPKSVLMTEQEQKLKDSETAISSLETSKEYLEKQMAEVENNLRELLQQDPGLA 120

Query: 121 QQIMSMSVM 129
           +QIMSMSVM
Sbjct: 121 RQIMSMSVM 129

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|215769263|dbj|BAH01492.1| unnamed protein product [Oryza sativa Japonica Group] gi|218190695|gb|EEC73122.1| hypothetical protein OsI_07131 [Oryza sativa Indica Group] gi|222622811|gb|EEE56943.1| hypothetical protein OsJ_06647 [Oryza sativa Japonica Group]

 Score =  212 bits (539), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 99/128 (77%), Positives = 120/128 (93%)

Query: 1   MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKS 60
           M+DEANRAAF E++GRMI+ TGK+KQ+Q QMR+KEGEKKRAYLTLEELRQLPDNTNTYK+
Sbjct: 1   MADEANRAAFVELQGRMIDTTGKIKQLQTQMRSKEGEKKRAYLTLEELRQLPDNTNTYKT 60

Query: 61  IGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLA 120
           +G+ F+LEPKS+L+NEQEQ+L DSESAIA++Q SKEYLEKQ AEVE+N+ ELLQQDPGLA
Sbjct: 61  VGKVFILEPKSLLLNEQEQKLNDSESAIASMQTSKEYLEKQLAEVENNIRELLQQDPGLA 120

Query: 121 QQIMSMSV 128
           +QI+SM+V
Sbjct: 121 RQILSMTV 128

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470285|ref|XP_004152848.1| PREDICTED: probable prefoldin subunit 1-like isoform 1 [Cucumis sativus]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 102/128 (79%), Positives = 118/128 (92%)

Query: 1   MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKS 60
           M+DE NRA F EI+GRMIE TGK+KQ+Q Q+RNKEGEKKRA+LTLEEL+QL ++TNTYKS
Sbjct: 1   MADEVNRATFLEIQGRMIEITGKLKQLQTQIRNKEGEKKRAFLTLEELKQLAEDTNTYKS 60

Query: 61  IGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLA 120
           IGRTFVLE KSVLMNEQEQ+ KDSE+AIA+LQ+SKEYLEKQ AEVE+NL ELLQQDPG+A
Sbjct: 61  IGRTFVLESKSVLMNEQEQKFKDSETAIASLQSSKEYLEKQMAEVENNLRELLQQDPGIA 120

Query: 121 QQIMSMSV 128
           +QIMSMSV
Sbjct: 121 RQIMSMSV 128

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242061480|ref|XP_002452029.1| hypothetical protein SORBIDRAFT_04g016750 [Sorghum bicolor] gi|241931860|gb|EES05005.1| hypothetical protein SORBIDRAFT_04g016750 [Sorghum bicolor]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/128 (75%), Positives = 117/128 (91%)

Query: 1   MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKS 60
           M+DEANRAAF E++ RMI+ T K+KQ+Q QMR+KEGEKKRAYLTLEELRQLPD+TNTYK+
Sbjct: 1   MADEANRAAFMELQSRMIDTTAKIKQLQTQMRSKEGEKKRAYLTLEELRQLPDDTNTYKT 60

Query: 61  IGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLA 120
           +G+ F+LEPKSVL NEQEQ+L DSESAIA++Q SKEYLEKQ+ EVE+N+ ELLQQDPGLA
Sbjct: 61  VGKVFILEPKSVLFNEQEQKLHDSESAIASMQTSKEYLEKQQGEVENNIRELLQQDPGLA 120

Query: 121 QQIMSMSV 128
           +QI+SM+V
Sbjct: 121 RQILSMTV 128

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831758|ref|XP_002883761.1| hypothetical protein ARALYDRAFT_480234 [Arabidopsis lyrata subsp. lyrata] gi|297329601|gb|EFH60020.1| hypothetical protein ARALYDRAFT_480234 [Arabidopsis lyrata subsp. lyrata]

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 100/128 (78%), Positives = 117/128 (91%)

Query: 1   MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKS 60
           M+DEA RAAF EI+  MIE TGK+KQVQNQMRNKEG++KRA+LTLEELR LP++TNTYKS
Sbjct: 1   MADEATRAAFMEIQASMIELTGKLKQVQNQMRNKEGDRKRAFLTLEELRPLPEDTNTYKS 60

Query: 61  IGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLA 120
           IGRTFVLEPK+VL  EQEQ+LKDSE+A+A+LQ SKEYLEKQ AEVE+NL ELLQQ+PG+A
Sbjct: 61  IGRTFVLEPKTVLEGEQEQKLKDSEAAVASLQTSKEYLEKQTAEVENNLRELLQQEPGIA 120

Query: 121 QQIMSMSV 128
           QQIMSMS+
Sbjct: 121 QQIMSMSM 128

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30678386|ref|NP_850990.1| prefoldin 1 [Arabidopsis thaliana] gi|15081640|gb|AAK82475.1| At2g07350/T13E11.12 [Arabidopsis thaliana] gi|20334838|gb|AAM16175.1| At2g07350/T13E11.12 [Arabidopsis thaliana] gi|21592911|gb|AAM64861.1| unknown [Arabidopsis thaliana] gi|330250954|gb|AEC06048.1| prefoldin 1 [Arabidopsis thaliana]

 Score =  204 bits (520), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 100/128 (78%), Positives = 116/128 (90%)

Query: 1   MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKS 60
           M+DEA RAAF EI+  MIE TGK+KQVQNQMRNKEG++KRA+LTLEELR LP+ TNTYKS
Sbjct: 1   MADEATRAAFMEIQASMIELTGKLKQVQNQMRNKEGDRKRAFLTLEELRPLPEETNTYKS 60

Query: 61  IGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLA 120
           IGRTFVLEPK+VL  EQEQ+LKDSE+A+A+LQ SKEYLEKQ AEVE+NL ELLQQ+PG+A
Sbjct: 61  IGRTFVLEPKTVLEGEQEQKLKDSEAAVASLQTSKEYLEKQVAEVENNLRELLQQEPGIA 120

Query: 121 QQIMSMSV 128
           QQIMSMS+
Sbjct: 121 QQIMSMSM 128

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
TAIR|locus:2054845	128	PFD1 "PREFOLDIN 1" [Arabidopsi	0.992	1.0	0.781	1.8e-48
RGD|1305603	122	Pfdn1 "prefoldin subunit 1" [R	0.829	0.877	0.355	1.8e-14
UNIPROTKB|Q3SZE2	122	PFDN1 "Prefoldin subunit 1" [B	0.829	0.877	0.345	4.9e-14
MGI|MGI:1914449	122	Pfdn1 "prefoldin 1" [Mus muscu	0.829	0.877	0.345	4.9e-14
UNIPROTKB|E2R297	122	LOC484977 "Uncharacterized pro	0.829	0.877	0.345	6.2e-14
UNIPROTKB|F1NDS5	124	PFDN1 "Uncharacterized protein	0.813	0.846	0.342	1e-13
UNIPROTKB|O60925	122	PFDN1 "Prefoldin subunit 1" [H	0.829	0.877	0.336	1.6e-13
UNIPROTKB|E2RDU3	120	E2RDU3 "Uncharacterized protei	0.829	0.891	0.348	7.1e-13
ZFIN|ZDB-GENE-050306-50	122	pfdn1 "prefoldin subunit 1" [D	0.829	0.877	0.308	1.9e-12
UNIPROTKB|E3M7Q7	117	Cre-pfd-1 "CRE-PFD-1 protein"	0.868	0.957	0.362	2.4e-12

TAIR|locus:2054845 PFD1 "PREFOLDIN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 100/128 (78%), Positives = 116/128 (90%)

Query:     1 MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKS 60
             M+DEA RAAF EI+  MIE TGK+KQVQNQMRNKEG++KRA+LTLEELR LP+ TNTYKS
Sbjct:     1 MADEATRAAFMEIQASMIELTGKLKQVQNQMRNKEGDRKRAFLTLEELRPLPEETNTYKS 60

Query:    61 IGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLA 120
             IGRTFVLEPK+VL  EQEQ+LKDSE+A+A+LQ SKEYLEKQ AEVE+NL ELLQQ+PG+A
Sbjct:    61 IGRTFVLEPKTVLEGEQEQKLKDSEAAVASLQTSKEYLEKQVAEVENNLRELLQQEPGIA 120

Query:   121 QQIMSMSV 128
             QQIMSMS+
Sbjct:   121 QQIMSMSM 128

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

RGD|1305603 Pfdn1 "prefoldin subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 38/107 (35%), Positives = 61/107 (57%)

Query:     7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFV 66
             + AF E++ ++I+   K+K    Q+      KK A+LT  E+  L D TN Y+ +GR F+
Sbjct:    10 KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query:    67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113
             L+ K V+ N+  ++ K +E  I  L+  K YLE+   E E N+ E+L
Sbjct:    70 LQSKEVIHNQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0021537 "telencephalon development" evidence=IEA;ISO

GO:0021549 "cerebellum development" evidence=IEA;ISO

GO:0030036 "actin cytoskeleton organization" evidence=IEA;ISO

GO:0042113 "B cell activation" evidence=IEA;ISO

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|Q3SZE2 PFDN1 "Prefoldin subunit 1" [Bos taurus (taxid:9913)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 37/107 (34%), Positives = 60/107 (56%)

Query:     7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFV 66
             + AF E++ ++I+   K+K    Q+      KK A+LT  E+  L D TN Y+ +GR F+
Sbjct:    10 KKAFTELQAKVIDTQQKVKLADVQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query:    67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113
             L+ K  + N+  ++ K +E  I  L+  K YLE+   E E N+ E+L
Sbjct:    70 LQSKEAIHNQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116

GO:0051086 "chaperone mediated protein folding independent of cofactor" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0042113 "B cell activation" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0021549 "cerebellum development" evidence=IEA

GO:0021537 "telencephalon development" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

MGI|MGI:1914449 Pfdn1 "prefoldin 1" [Mus musculus (taxid:10090)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 37/107 (34%), Positives = 61/107 (57%)

Query:     7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFV 66
             + AF E++ ++I+   K+K    Q+      KK A+LT  E+  L D TN Y+ +GR F+
Sbjct:    10 KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query:    67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113
             L+ K V+ N+  ++ K ++  I  L+  K YLE+   E E N+ E+L
Sbjct:    70 LQSKEVIHNQLLEKQKIAKEKIKELEQKKSYLERSVKEAEDNIREML 116

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0021537 "telencephalon development" evidence=IMP

GO:0021549 "cerebellum development" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0042113 "B cell activation" evidence=IMP

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|E2R297 LOC484977 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 37/107 (34%), Positives = 61/107 (57%)

Query:     7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFV 66
             + AF E++ ++I+   K+K    Q+      KK A+LT  E+  L D TN Y+ +GR F+
Sbjct:    10 KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query:    67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113
             L+ K V+ ++  ++ K +E  I  L+  K YLE+   E E N+ E+L
Sbjct:    70 LQSKEVIHSQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1NDS5 PFDN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 36/105 (34%), Positives = 59/105 (56%)

Query:     9 AFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLE 68
             AF E++ ++I+   K+K    Q+      KK A+LT  E+  L D T  Y+ +GR F+L+
Sbjct:    14 AFTELQAKVIDTQQKVKLADTQIEQLSKTKKHAHLTDTEIMTLVDETRMYEGVGRMFILQ 73

Query:    69 PKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113
              K V+ N+  ++ + +E  I  L+  K YLE+   E E N+ E+L
Sbjct:    74 SKGVIHNQLLEKQRIAEEKIKELEQKKSYLERSVKEAEDNIREML 118

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0021537 "telencephalon development" evidence=IEA

GO:0021549 "cerebellum development" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0042113 "B cell activation" evidence=IEA

UNIPROTKB|O60925 PFDN1 "Prefoldin subunit 1" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 36/107 (33%), Positives = 60/107 (56%)

Query:     7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFV 66
             + AF E++ ++I+   K+K    Q+      KK A+LT  E+  L D TN Y+ +GR F+
Sbjct:    10 KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69

Query:    67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113
             L+ K  + ++  ++ K +E  I  L+  K YLE+   E E N+ E+L
Sbjct:    70 LQSKEAIHSQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0021537 "telencephalon development" evidence=IEA

GO:0021549 "cerebellum development" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0042113 "B cell activation" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0007049 "cell cycle" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|E2RDU3 E2RDU3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 38/109 (34%), Positives = 58/109 (53%)

Query:     7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFV 66
             + AF E++ ++I+   K+K    Q+    G KK A+LT  E+  L D TN Y+ + R F+
Sbjct:    10 KKAFTELQAKVIDTQQKVKLADIQIEQLNGMKKHAHLTDTEIMTLVDETNMYEGVRRMFI 69

Query:    67 LEPKSVLMNEQEQRLKDS--ESAIAALQASKEYLEKQKAEVESNLAELL 113
             L+ K V+    E+  K +  E  I  L+  K YLE    E E N+ E+L
Sbjct:    70 LQSKEVIQTRTEKNEKQNIAEEKIKELEQKKSYLEWSVKEAEDNIQEML 118

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

ZFIN|ZDB-GENE-050306-50 pfdn1 "prefoldin subunit 1" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 33/107 (30%), Positives = 59/107 (55%)

Query:     7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFV 66
             + AF E++ +M++   K+K    Q+      KK A LT  E+  LP++T  ++  GR F+
Sbjct:    10 KKAFAELQAKMVDTQQKVKLADLQIEQLSRVKKHANLTHGEITSLPESTRMFEGAGRMFI 69

Query:    67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113
             L+ K  + N+  ++ K ++  I  L+  K YLE+   + E N+ E+L
Sbjct:    70 LQSKGEISNQLLEKQKTADDKIKELEQKKTYLERSVKDAEDNIREML 116

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

UNIPROTKB|E3M7Q7 Cre-pfd-1 "CRE-PFD-1 protein" [Caenorhabditis remanei (taxid:31234)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 42/116 (36%), Positives = 65/116 (56%)

Query:     1 MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEG-EKKR-AYLTLEELRQLPDNTNTY 58
             M+DE    AF++++ +   N  +M+ VQ +   K   +K R +  T + L  L +N   Y
Sbjct:     1 MADEEISKAFRDLQFKT--NETRMRIVQGEQNKKINYQKMRISESTKKNLIGLDENLKYY 58

Query:    59 KSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114
             +S+GR F+L  K+  ++  E   K S+  I A++  KEYLEK   E ESNL EL+Q
Sbjct:    59 RSVGRMFLLTDKTAEISRHETEAKQSKDKIEAIEKQKEYLEKGLVEAESNLRELIQ 114

GO:0005737 "cytoplasm" evidence=ISS

GO:0008406 "gonad development" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5D016	PFD1_DANRE	No assigned EC number	0.3084	0.8294	0.8770	yes	no
Q17827	PFD1_CAEEL	No assigned EC number	0.3362	0.8682	0.9572	yes	no
O60925	PFD1_HUMAN	No assigned EC number	0.3364	0.8294	0.8770	yes	no
Q3SZE2	PFD1_BOVIN	No assigned EC number	0.3457	0.8294	0.8770	yes	no
Q9CWM4	PFD1_MOUSE	No assigned EC number	0.3457	0.8294	0.8770	yes	no
Q5RAM7	PFD1_PONAB	No assigned EC number	0.3457	0.8294	0.8770	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	129
pfam01920	106	pfam01920, Prefoldin_2, Prefoldin subunit	1e-11
PRK09343	121	PRK09343, PRK09343, prefoldin subunit beta; Provis	2e-04
COG1382	119	COG1382, GimC, Prefoldin, chaperonin cofactor [Pos	8e-04

>gnl|CDD|202045 pfam01920, Prefoldin_2, Prefoldin subunit

 Score = 56.5 bits (137), Expect = 1e-11
 Identities = 32/105 (30%), Positives = 53/105 (50%)

Query: 11  QEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPK 70
           QE+  +  +   +++ +  Q++  E + K   L LEEL  L ++T  YK IG   V + K
Sbjct: 1   QELINKFQQLQQQLQLLAQQIKQLETQLKEIELVLEELELLDEDTKVYKLIGDVLVKQDK 60

Query: 71  SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115
             +  E E+R +  E  I  L+   E LEK+  E++  L +L  Q
Sbjct: 61  EEVKEELEERKETLEKEIKTLEKQLEKLEKELEELKEELYKLFGQ 105

This family includes prefoldin subunits that are not detected by pfam02996. Length = 106

>gnl|CDD|181787 PRK09343, PRK09343, prefoldin subunit beta; Provisional

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 22/82 (26%), Positives = 43/82 (52%)

Query: 35  EGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQAS 94
           + E +     LEEL +LPD+T  YK +G   V   K+ +  E ++R +  E     L+  
Sbjct: 34  DLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQ 93

Query: 95  KEYLEKQKAEVESNLAELLQQD 116
           ++ L ++  E+++ + E+L + 
Sbjct: 94  EKKLREKLKELQAKINEMLSKY 115

Length = 121

>gnl|CDD|224300 COG1382, GimC, Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

 Score = 36.5 bits (85), Expect = 8e-04
 Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 11  QEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYL-------TLEELRQLPDNTNTYKSIGR 63
           +++   +     +++Q+Q Q++    +K++           LEEL +L ++   YK +G 
Sbjct: 2   EQLPPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGN 61

Query: 64  TFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLA 120
             V   K   ++E E+R +  E  I  L+  +E L+++  E++S + + L       
Sbjct: 62  LLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDAANGG 118

Length = 119

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
KOG3501	114	consensus Molecular chaperone Prefoldin, subunit 1	99.96
PRK09343	121	prefoldin subunit beta; Provisional	99.94
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	99.91
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	99.88
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	99.88
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	99.82
KOG3478	120	consensus Prefoldin subunit 6, KE2 family [Posttra	99.11
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	99.09
PRK03947	140	prefoldin subunit alpha; Reviewed	98.89
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	98.35
KOG4098	140	consensus Molecular chaperone Prefoldin, subunit 2	98.29
PRK14011	144	prefoldin subunit alpha; Provisional	98.23
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	98.22
KOG1760	131	consensus Molecular chaperone Prefoldin, subunit 4	97.52
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	97.45
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	97.35
PRK01203	130	prefoldin subunit alpha; Provisional	96.89
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	96.24
PRK03947	140	prefoldin subunit alpha; Reviewed	96.19
PRK09343	121	prefoldin subunit beta; Provisional	96.12
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	95.93
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	95.73
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	94.79
PRK11637	428	AmiB activator; Provisional	94.61
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	94.51
PRK03918	880	chromosome segregation protein; Provisional	94.28
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	94.13
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	93.19
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	92.46
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	92.42
PRK02224	880	chromosome segregation protein; Provisional	92.12
PHA02562	562	46 endonuclease subunit; Provisional	91.87
PHA02562	562	46 endonuclease subunit; Provisional	91.07
PRK01156	895	chromosome segregation protein; Provisional	90.72
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	90.27
PRK10884	206	SH3 domain-containing protein; Provisional	89.44
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	89.18
PRK03918	880	chromosome segregation protein; Provisional	88.21
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	87.77
KOG0996	1293	consensus Structural maintenance of chromosome pro	87.68
PRK02119	73	hypothetical protein; Provisional	87.16
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	87.13
PRK11637	428	AmiB activator; Provisional	87.1
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	87.03
PRK09039	343	hypothetical protein; Validated	86.74
PRK04406	75	hypothetical protein; Provisional	86.7
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	85.82
PF03148	384	Tektin: Tektin family; InterPro: IPR000435 Tektin	85.1
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	83.96
PF13758	99	Prefoldin_3: Prefoldin subunit	83.94
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	83.86
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	83.84
PRK02793	72	phi X174 lysis protein; Provisional	83.0
PRK04325	74	hypothetical protein; Provisional	82.88
KOG4286	966	consensus Dystrophin-like protein [Cell motility;	82.33
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	82.15
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	81.71
PRK04863	1486	mukB cell division protein MukB; Provisional	81.35
PRK00295	68	hypothetical protein; Provisional	81.32
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	80.74
PF15369	328	KIAA1328: Uncharacterised protein KIAA1328	80.62
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	80.07
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	80.02

>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.7e-29  Score=174.07  Aligned_cols=113  Identities=34%  Similarity=0.522  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHH
Q 045953            6 NRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSE   85 (129)
Q Consensus         6 l~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e   85 (129)
                      ++|+|.++|.+.+++|+++..++.|+.++++.++++.+|.+|+..+.+++++|.|||||||++|++.+..+|+.+.+.++
T Consensus         1 ~~kaf~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~se   80 (114)
T KOG3501|consen    1 MQKAFSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSE   80 (114)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHH
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 045953           86 SAIAALQASKEYLEKQKAEVESNLAELLQQDPG  118 (129)
Q Consensus        86 ~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~  118 (129)
                      ++|++|++++.||++++.+.+.||||+++++++
T Consensus        81 e~IeaLqkkK~YlEk~v~eaE~nLrellqs~~~  113 (114)
T KOG3501|consen   81 EKIEALQKKKTYLEKTVSEAEQNLRELLQSRRA  113 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999999999999999876

>PRK09343 prefoldin subunit beta; Provisional

Probab=99.94  E-value=3.2e-25  Score=158.64  Aligned_cols=111  Identities=22%  Similarity=0.293  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhH
Q 045953            5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDS   84 (129)
Q Consensus         5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~   84 (129)
                      .+...|++.-.+++.++++++.+.+|++.++++++++++|.+||+.+|+|++||++||+|||+.|+++++.+|+++++.+
T Consensus         4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i   83 (121)
T PRK09343          4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL   83 (121)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence            47788888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953           85 ESAIAALQASKEYLEKQKAEVESNLAELLQQ  115 (129)
Q Consensus        85 e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~  115 (129)
                      +.+|+.|+++.+|+++++++.+.+|++++++
T Consensus        84 e~~ik~lekq~~~l~~~l~e~q~~l~~ll~~  114 (121)
T PRK09343         84 ELRSRTLEKQEKKLREKLKELQAKINEMLSK  114 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999987

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=99.91  E-value=1.9e-23  Score=146.84  Aligned_cols=106  Identities=28%  Similarity=0.387  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHH
Q 045953           10 FQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIA   89 (129)
Q Consensus        10 ~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~   89 (129)
                      ++++..+++.++++++.+.+|+..++++++++.+|++||+.+|||++||++||+|||..|+++++.+|+++++.++.+|+
T Consensus         5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~   84 (110)
T TIGR02338         5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVK   84 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHH
Confidence            55666777779999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953           90 ALQASKEYLEKQKAEVESNLAELLQQ  115 (129)
Q Consensus        90 ~Lekq~~~Le~~l~e~e~~Lrell~~  115 (129)
                      .|+++..|+++++.+++.+|++++++
T Consensus        85 ~lek~~~~l~~~l~e~q~~l~~~~~~  110 (110)
T TIGR02338        85 TLQRQEERLREQLKELQEKIQEALAP  110 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999864

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=1.4e-21  Score=139.17  Aligned_cols=109  Identities=24%  Similarity=0.322  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHH
Q 045953            9 AFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAI   88 (129)
Q Consensus         9 ~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i   88 (129)
                      ..+++-+++++++++++.+..|+.+++.++++++.+++||+.+|+|++||+.||..||..++++++++|+++.+.++.+|
T Consensus         7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri   86 (119)
T COG1382           7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRI   86 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            35566667777999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 045953           89 AALQASKEYLEKQKAEVESNLAELLQQDP  117 (129)
Q Consensus        89 ~~Lekq~~~Le~~l~e~e~~Lrell~~~~  117 (129)
                      ++|+++.+.++++++++++.|+.++++..
T Consensus        87 ~tLekQe~~l~e~l~eLq~~i~~~l~~~~  115 (119)
T COG1382          87 KTLEKQEEKLQERLEELQSEIQKALGDAA  115 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999998743

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=99.88  E-value=5.1e-22  Score=136.56  Aligned_cols=105  Identities=34%  Similarity=0.539  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHH
Q 045953           11 QEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAA   90 (129)
Q Consensus        11 ~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~   90 (129)
                      ++++.++..++.++..+.+++..++..++++.+|.+||..+|||+++|++||+|||..|++++.++|+++.+.++.+|++
T Consensus         1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~   80 (106)
T PF01920_consen    1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK   80 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953           91 LQASKEYLEKQKAEVESNLAELLQQ  115 (129)
Q Consensus        91 Lekq~~~Le~~l~e~e~~Lrell~~  115 (129)
                      |+++.+++++++++++.+|++++++
T Consensus        81 l~~~~~~l~~~l~~~~~~l~~~~~~  105 (106)
T PF01920_consen   81 LEKQLKYLEKKLKELKKKLYELFGQ  105 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCS-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999998865

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=99.82  E-value=4.2e-19  Score=123.63  Aligned_cols=104  Identities=23%  Similarity=0.316  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHH
Q 045953           10 FQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIA   89 (129)
Q Consensus        10 ~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~   89 (129)
                      |+.+..+++.++.+++.+.+++..++..+++...|.+||..+|||++||++||.+||..|++++...|+++++.++.+++
T Consensus         1 ~q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~   80 (105)
T cd00632           1 VQEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIK   80 (105)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            35677788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           90 ALQASKEYLEKQKAEVESNLAELL  113 (129)
Q Consensus        90 ~Lekq~~~Le~~l~e~e~~Lrell  113 (129)
                      .++++.+++++++.+++.+|+++.
T Consensus        81 ~l~~~~~~l~~~~~elk~~l~~~~  104 (105)
T cd00632          81 RLERQEEDLQEKLKELQEKIQQAQ  104 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999985

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=5.1e-09  Score=73.77  Aligned_cols=109  Identities=17%  Similarity=0.203  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhH
Q 045953            5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDS   84 (129)
Q Consensus         5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~   84 (129)
                      ++++-|++.-.+++.+|..+.......+.++..+.+..+.++||+-+.||++||+-+|..+|+.+-++.......+++-.
T Consensus         2 ~~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI   81 (120)
T KOG3478|consen    2 ALQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFI   81 (120)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHH
Confidence            57888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           85 ESAIAALQASKEYLEKQKAEVESNLAELL  113 (129)
Q Consensus        85 e~~i~~Lekq~~~Le~~l~e~e~~Lrell  113 (129)
                      +.+|+.++++..-+++.+.+..+.+-.+-
T Consensus        82 ~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q  110 (120)
T KOG3478|consen   82 SKEIKRLENQIRDSQEEFEKQREAVIKLQ  110 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988887766655443

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.09  E-value=2.1e-09  Score=75.97  Aligned_cols=103  Identities=21%  Similarity=0.304  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------------------CCchhhhhhh-hhhh
Q 045953           11 QEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLP-----------------------DNTNTYKSIG-RTFV   66 (129)
Q Consensus        11 ~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~-----------------------~dt~vYk~VG-rmFv   66 (129)
                      .++...+...+++++.+.+++..+...+.+...+.++|..++                       ++.+||..|| ..||
T Consensus         2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~v   81 (129)
T cd00890           2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYV   81 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEE
Confidence            355566666777777777777777777777777788887776                       7889999999 9999


Q ss_pred             ccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL  113 (129)
Q Consensus        67 ~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell  113 (129)
                      ..|.++..+.++++++.++..++.+++....+..++..+..+++++.
T Consensus        82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~  128 (129)
T cd00890          82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQ  128 (129)
T ss_pred             EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999998764

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=98.89  E-value=6e-08  Score=70.22  Aligned_cols=109  Identities=17%  Similarity=0.245  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCchhhhhhh---------------------
Q 045953            7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLP---DNTNTYKSIG---------------------   62 (129)
Q Consensus         7 ~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~---~dt~vYk~VG---------------------   62 (129)
                      ...+++++.++...++++..+.+++..+...+.+...+.+.|..++   ++..+|-++|                     
T Consensus         5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~   84 (140)
T PRK03947          5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGA   84 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCC
Confidence            4567788888888999999999999999999999999999998886   7888999999                     


Q ss_pred             hhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953           63 RTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ  115 (129)
Q Consensus        63 rmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~  115 (129)
                      ..||..|.++.++.|+.+++.++..++.++.....+..+++..+..+.++...
T Consensus        85 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~  137 (140)
T PRK03947         85 GYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE  137 (140)
T ss_pred             CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45777899999999999999999999999999999999999999999987654

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=98.35  E-value=1.2e-05  Score=56.95  Aligned_cols=100  Identities=18%  Similarity=0.238  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--chhhhhhhh-hhh--------------------c
Q 045953           11 QEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDN--TNTYKSIGR-TFV--------------------L   67 (129)
Q Consensus        11 ~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~d--t~vYk~VGr-mFv--------------------~   67 (129)
                      +++..++...++++..+.+++..+...+.+...+.+.|+.++++  ..++-++|. +||                    .
T Consensus         2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE   81 (126)
T TIGR00293         2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE   81 (126)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Confidence            46777788899999999999999999999999999999999754  566777766 444                    4


Q ss_pred             cChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           68 EPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLA  110 (129)
Q Consensus        68 ~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr  110 (129)
                      .|.++.++-|+.+++.++..++.|++....+..++......++
T Consensus        82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~  124 (126)
T TIGR00293        82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ  124 (126)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6777777777777777777777777777777777766665543

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=3.5e-05  Score=56.03  Aligned_cols=95  Identities=14%  Similarity=0.214  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHH
Q 045953           12 EIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAAL   91 (129)
Q Consensus        12 Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~L   91 (129)
                      -+++++....++++.+.+.+..++.++++-.+.++-|..++|+-+.||-||-.+|-.++.+++=.|...++.++.-|+.|
T Consensus        19 ~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~RKCfRmIgGvLVErTVkeVlP~L~~nke~i~~~i~~l   98 (140)
T KOG4098|consen   19 AVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDPTRKCFRMIGGVLVERTVKEVLPILQTNKENIEKVIKKL   98 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChhhHHHHHhccchhhhhHHHHhHHHHhhHHHHHHHHHHH
Confidence            35778889999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHH
Q 045953           92 QASKEYLEKQKAEVE  106 (129)
Q Consensus        92 ekq~~~Le~~l~e~e  106 (129)
                      ..+.....+.|++-+
T Consensus        99 ~~qL~~k~kElnkfk  113 (140)
T KOG4098|consen   99 TDQLVQKGKELNKFK  113 (140)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888777777766544

>PRK14011 prefoldin subunit alpha; Provisional

Probab=98.23  E-value=5.3e-05  Score=55.87  Aligned_cols=109  Identities=12%  Similarity=0.212  Sum_probs=87.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhh-h-----------------
Q 045953            3 DEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGR-T-----------------   64 (129)
Q Consensus         3 d~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGr-m-----------------   64 (129)
                      |++|++.+.+|+.    .++++..+..++..+.....+..-+.+-|+.++++..+.-|+|. +                 
T Consensus         2 ~~elq~~~~~l~~----~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIG   77 (144)
T PRK14011          2 NEELQNQFMALEV----YNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVG   77 (144)
T ss_pred             cHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEcc
Confidence            5677776666666    99999999999999999999999999999988777777777766 3                 


Q ss_pred             ---hhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953           65 ---FVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ  115 (129)
Q Consensus        65 ---Fv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~  115 (129)
                         ||..|.++.++.++.+++.++...++|......+...+.+++..|+.-+++
T Consensus        78 tGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~  131 (144)
T PRK14011         78 SDIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQA  131 (144)
T ss_pred             CCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               677788888888888888888888888888888877777777666655443

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=98.22  E-value=3.7e-05  Score=54.72  Aligned_cols=102  Identities=15%  Similarity=0.210  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----------------------Cchhhhhhhh-hhhc
Q 045953           12 EIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPD-----------------------NTNTYKSIGR-TFVL   67 (129)
Q Consensus        12 Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~-----------------------dt~vYk~VGr-mFv~   67 (129)
                      +++......+.+++.+.+++..+...+.+...+.+.|..+++                       ..+++-++|- .||.
T Consensus         3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE   82 (129)
T cd00584           3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVE   82 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEE
Confidence            455666667777777777777777777777777777777754                       2445666665 8999


Q ss_pred             cChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           68 EPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL  113 (129)
Q Consensus        68 ~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell  113 (129)
                      .|.++..+-++.+++.++..++.+++....+...++..+..+++..
T Consensus        83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~  128 (129)
T cd00584          83 KDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQ  128 (129)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999998754

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.0053  Score=44.32  Aligned_cols=102  Identities=17%  Similarity=0.231  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHH
Q 045953            8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESA   87 (129)
Q Consensus         8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~   87 (129)
                      +-|.-+-.+.-+...-+...+.++..++-...++.|..++=      ..+=--||.+|+.-+.+.+.+.|++..+.++..
T Consensus        23 N~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd------~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~   96 (131)
T KOG1760|consen   23 NEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDD------EDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKE   96 (131)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccc------cccceehhhhheeccHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555444444443332      333356999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953           88 IAALQASKEYLEKQKAEVESNLAELLQQ  115 (129)
Q Consensus        88 i~~Lekq~~~Le~~l~e~e~~Lrell~~  115 (129)
                      |..|+...+.+...+.++...|=.-++.
T Consensus        97 i~~les~~e~I~~~m~~LK~~LYaKFgd  124 (131)
T KOG1760|consen   97 IEELESELESISARMDELKKVLYAKFGD  124 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999988877555443

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.0047  Score=45.68  Aligned_cols=106  Identities=15%  Similarity=0.249  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCchhhhhhhh-h-------------------
Q 045953            8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQL---PDNTNTYKSIGR-T-------------------   64 (129)
Q Consensus         8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l---~~dt~vYk~VGr-m-------------------   64 (129)
                      +-+.++-++++..++++..+.+++..+...+.++.-|.+-|+++   +++..+--|||. .                   
T Consensus         6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg   85 (145)
T COG1730           6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSG   85 (145)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCc
Confidence            34556666666689999999999888888777777766666655   322345555554 3                   


Q ss_pred             -hhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           65 -FVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL  113 (129)
Q Consensus        65 -Fv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell  113 (129)
                       +|..+.++.++-|+++++.++..+..++.....|.......+..++.+-
T Consensus        86 ~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~  135 (145)
T COG1730          86 YYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ  135 (145)
T ss_pred             eeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             4666777777777777777777777777777777777777766666654

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=97.35  E-value=0.00064  Score=47.36  Aligned_cols=62  Identities=23%  Similarity=0.308  Sum_probs=53.4

Q ss_pred             CCchhhhhhhh-hhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953           53 DNTNTYKSIGR-TFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ  114 (129)
Q Consensus        53 ~dt~vYk~VGr-mFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~  114 (129)
                      +..+||-+||- .||..|.++..+-++.+++.++..++.+.++...+..++...+..++++.+
T Consensus        57 ~~~~vlV~lG~~~~vE~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~  119 (120)
T PF02996_consen   57 DTDKVLVSLGAGYYVEMSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQ  119 (120)
T ss_dssp             STTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             CCCEEEEEeeCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34445555555 589999999999999999999999999999999999999999999988764

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>PRK01203 prefoldin subunit alpha; Provisional

Probab=96.89  E-value=0.045  Score=39.82  Aligned_cols=95  Identities=16%  Similarity=0.225  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCchhhhhhhh---------------------hhhcc
Q 045953           12 EIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLP--DNTNTYKSIGR---------------------TFVLE   68 (129)
Q Consensus        12 Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~--~dt~vYk~VGr---------------------mFv~~   68 (129)
                      ++..++...++++..+.+|+.++.....+..-+.+-|..++  ++..+.-|+|.                     .||..
T Consensus         4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK   83 (130)
T PRK01203          4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAE   83 (130)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEe
Confidence            45566677888888888888888888888888888887763  45555555554                     36777


Q ss_pred             ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           69 PKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVE  106 (129)
Q Consensus        69 ~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e  106 (129)
                      |.++-++.|+++++.++.-+.........++..+.++-
T Consensus        84 ~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~  121 (130)
T PRK01203         84 ERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY  121 (130)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77766666666666666666555555555555555443

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=96.24  E-value=0.058  Score=37.17  Aligned_cols=98  Identities=14%  Similarity=0.116  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhh
Q 045953            6 NRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTL--EELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKD   83 (129)
Q Consensus         6 l~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~--~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~   83 (129)
                      +...|+.++.++....++++.+.+++.-.+..+.++....  ..+-..-++.=|-.+++.  +....++-++.++.+++.
T Consensus         4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~e--a~~~Le~~~e~le~~i~~   81 (105)
T cd00632           4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEE--ARTELKERLETIELRIKR   81 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHH--HHHHHHHHHHHHHHHHHH
Confidence            3445566666666666666666666655555555555432  111122223333333333  234445555555666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 045953           84 SESAIAALQASKEYLEKQKAEV  105 (129)
Q Consensus        84 ~e~~i~~Lekq~~~Le~~l~e~  105 (129)
                      ++..++.++++-..+..++.+.
T Consensus        82 l~~~~~~l~~~~~elk~~l~~~  103 (105)
T cd00632          82 LERQEEDLQEKLKELQEKIQQA  103 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666665554

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=96.19  E-value=0.028  Score=40.40  Aligned_cols=111  Identities=18%  Similarity=0.215  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhh---hhhhhhccChH-----------HHH---
Q 045953           12 EIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKS---IGRTFVLEPKS-----------VLM---   74 (129)
Q Consensus        12 Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~---VGrmFv~~~k~-----------~i~---   74 (129)
                      +....+...+.+++.+..+++.+...+....-+..++...-+.-....+   -+.+||.-+..           .++   
T Consensus         3 ~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~l   82 (140)
T PRK03947          3 ESEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSL   82 (140)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEc
Confidence            4566788899999999999999999999999999999887544444442   23355544422           222   


Q ss_pred             -------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHH
Q 045953           75 -------NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQ  122 (129)
Q Consensus        75 -------~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~  122 (129)
                             ..+.+-++.++.+++.|++..+.++..+.....++.++.+.=..++++
T Consensus        83 G~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~  137 (140)
T PRK03947         83 GAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE  137 (140)
T ss_pred             CCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   388999999999999999999999999999999998887655555444

>PRK09343 prefoldin subunit beta; Provisional

Probab=96.12  E-value=0.11  Score=36.94  Aligned_cols=108  Identities=16%  Similarity=0.195  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHH
Q 045953           12 EIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAAL   91 (129)
Q Consensus        12 Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~L   91 (129)
                      .|+.+++..-.+++.+..++..+...+...+..+.|....-+.-.--.+=+++|-..-.-=|..+..+-.+.++.+++.+
T Consensus         4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i   83 (121)
T PRK09343          4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL   83 (121)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence            46777777777777888888888877777777777777664443333344567777777777777777778888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCChhH
Q 045953           92 QASKEYLEKQKAEVESNLAELLQQDPGL  119 (129)
Q Consensus        92 ekq~~~Le~~l~e~e~~Lrell~~~~~~  119 (129)
                      +...+.|+++.+.++.++.++-.+=..+
T Consensus        84 e~~ik~lekq~~~l~~~l~e~q~~l~~l  111 (121)
T PRK09343         84 ELRSRTLEKQEKKLREKLKELQAKINEM  111 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888877777765443333

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=95.93  E-value=0.13  Score=35.73  Aligned_cols=95  Identities=14%  Similarity=0.230  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 045953           18 IENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEY   97 (129)
Q Consensus        18 ~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~   97 (129)
                      .....+++.+..++..+...+...+....|...+-+.-.--.+=+++|...-.-=+..+..+-...++.+++.++...+.
T Consensus         6 q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~   85 (110)
T TIGR02338         6 QNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKT   85 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555554442222222223445555555445555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHH
Q 045953           98 LEKQKAEVESNLAEL  112 (129)
Q Consensus        98 Le~~l~e~e~~Lrel  112 (129)
                      |+++.+.++.++.++
T Consensus        86 lek~~~~l~~~l~e~  100 (110)
T TIGR02338        86 LQRQEERLREQLKEL  100 (110)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555555555543

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=95.73  E-value=0.024  Score=41.90  Aligned_cols=110  Identities=21%  Similarity=0.263  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhh---hhhhccChHHHH-HHHHH----------
Q 045953           14 KGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIG---RTFVLEPKSVLM-NEQEQ----------   79 (129)
Q Consensus        14 q~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VG---rmFv~~~k~~i~-~eL~e----------   79 (129)
                      +..+.++-.+++.+..|++.+.+++-.+..+..|+...-++-...++.|   .++|.-.....+ ..++.          
T Consensus         5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs   84 (145)
T COG1730           5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS   84 (145)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Confidence            4567789999999999999999999999999999999988889999999   566665433221 11111          


Q ss_pred             ---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 045953           80 ---RLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQI  123 (129)
Q Consensus        80 ---~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~  123 (129)
                         -..++++-|+.|+++.+.|.+...+++.+|.++-+....+.+++
T Consensus        85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~  131 (145)
T COG1730          85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEA  131 (145)
T ss_pred             ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               12345566666666666666666666666666655544444443

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=94.79  E-value=0.25  Score=33.22  Aligned_cols=100  Identities=15%  Similarity=0.173  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhH
Q 045953            5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDS   84 (129)
Q Consensus         5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~   84 (129)
                      ++...|.+++.++.....++..+..++...+..+.+......+-.-.-.=.++|-...+--+.....+-.+.++..++.+
T Consensus         2 e~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l   81 (106)
T PF01920_consen    2 ELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKL   81 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999888887772222112346666677778888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 045953           85 ESAIAALQASKEYLEKQKAE  104 (129)
Q Consensus        85 e~~i~~Lekq~~~Le~~l~e  104 (129)
                      +..++.++++.+.++..+.+
T Consensus        82 ~~~~~~l~~~l~~~~~~l~~  101 (106)
T PF01920_consen   82 EKQLKYLEKKLKELKKKLYE  101 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988764

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>PRK11637 AmiB activator; Provisional

Probab=94.61  E-value=2.1  Score=36.17  Aligned_cols=42  Identities=33%  Similarity=0.330  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL  113 (129)
Q Consensus        72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell  113 (129)
                      .-++.+..+++.++.+|..++.+...++..++..+..+...+
T Consensus        89 ~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl  130 (428)
T PRK11637         89 RKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL  130 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555556666666666666666666666665555555443

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=94.51  E-value=0.15  Score=35.49  Aligned_cols=33  Identities=15%  Similarity=0.227  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 045953           20 NTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLP   52 (129)
Q Consensus        20 ~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~   52 (129)
                      ...+++.+..++..+...+....-...|+..+-
T Consensus         4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~   36 (129)
T cd00890           4 LAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAK   36 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444445555555444444444444443

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PRK03918 chromosome segregation protein; Provisional

Probab=94.28  E-value=1.7  Score=39.47  Aligned_cols=98  Identities=18%  Similarity=0.263  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhH
Q 045953            5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDS   84 (129)
Q Consensus         5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~   84 (129)
                      ++...+.++..+.......+..+...+..+...+...+-.+++|....|.-|   .||+=+...-+..+.+++...++.+
T Consensus       388 ~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp---~c~~~L~~~~~~el~~~~~~ei~~l  464 (880)
T PRK03918        388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCP---VCGRELTEEHRKELLEEYTAELKRI  464 (880)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---CCCCcCCchhHHHHHHHHHHHHHHH
Confidence            3445555666666667777777777777777777788877777776544334   4888887777888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 045953           85 ESAIAALQASKEYLEKQKAEV  105 (129)
Q Consensus        85 e~~i~~Lekq~~~Le~~l~e~  105 (129)
                      +.++..|.++...++..++..
T Consensus       465 ~~~~~~l~~~~~~l~~~~~~~  485 (880)
T PRK03918        465 EKELKEIEEKERKLRKELREL  485 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            888888777777666666543

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=94.13  E-value=0.35  Score=30.23  Aligned_cols=41  Identities=27%  Similarity=0.453  Sum_probs=38.1

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953           74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ  114 (129)
Q Consensus        74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~  114 (129)
                      +++|+.+...++..+.+++++.+.+...+++.++++++++.
T Consensus         2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~   42 (55)
T PF05377_consen    2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS   42 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999998873

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=93.19  E-value=0.48  Score=33.24  Aligned_cols=96  Identities=17%  Similarity=0.187  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHH--H---------------------H
Q 045953           18 IENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSV--L---------------------M   74 (129)
Q Consensus        18 ~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~--i---------------------~   74 (129)
                      .++..+++.+..++..+...+.....+..++...-+--..+.+-...++.-|...  +                     .
T Consensus         2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE   81 (126)
T TIGR00293         2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE   81 (126)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Confidence            4578889999999999999999999999999887533333322111222222211  1                     0


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL  113 (129)
Q Consensus        75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell  113 (129)
                      ..+++-++.++.+++.|+++.+.|++.+.+...++..+.
T Consensus        82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~  120 (126)
T TIGR00293        82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLE  120 (126)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678888888888888888888888888888888877654

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=92.46  E-value=0.86  Score=32.07  Aligned_cols=96  Identities=19%  Similarity=0.265  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhh----------hhh-hhhccChHH-------------HH
Q 045953           19 ENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKS----------IGR-TFVLEPKSV-------------LM   74 (129)
Q Consensus        19 ~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~----------VGr-mFv~~~k~~-------------i~   74 (129)
                      ....+++.+..++..+...+........|+..+-+.-..+..          +|. +|+.....+             +.
T Consensus         3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE   82 (129)
T cd00584           3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVE   82 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEE
Confidence            467778888888888888888888888888877655555554          222 444443221             23


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953           75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ  114 (129)
Q Consensus        75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~  114 (129)
                      ..+.+-.+.++.+++.|++..+.|++.+.....++..+..
T Consensus        83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~  122 (129)
T cd00584          83 KDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEA  122 (129)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677788888888888888888888888888888877653

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=92.42  E-value=2.1  Score=30.74  Aligned_cols=90  Identities=18%  Similarity=0.271  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhh------hhccChHHHHHHHHHHHhhHHHHHHH
Q 045953           17 MIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRT------FVLEPKSVLMNEQEQRLKDSESAIAA   90 (129)
Q Consensus        17 ~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrm------Fv~~~k~~i~~eL~e~~~~~e~~i~~   90 (129)
                      +...-.+++.+..+++.+-..+.-++.-+.|+.+.      -.-++++      |-..---=+..+.++-.+.+++++..
T Consensus         8 ~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~a------l~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~   81 (119)
T COG1382           8 VQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKA------LEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKET   81 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHH
Confidence            33444555566666666666666666666664433      2223322      22222222334455556666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 045953           91 LQASKEYLEKQKAEVESNLAEL  112 (129)
Q Consensus        91 Lekq~~~Le~~l~e~e~~Lrel  112 (129)
                      |+.+.+.|+++-+.++..|.++
T Consensus        82 Le~ri~tLekQe~~l~e~l~eL  103 (119)
T COG1382          82 LELRIKTLEKQEEKLQERLEEL  103 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666554

>PRK02224 chromosome segregation protein; Provisional

Probab=92.12  E-value=2.5  Score=38.54  Aligned_cols=96  Identities=16%  Similarity=0.202  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHH
Q 045953           12 EIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAAL   91 (129)
Q Consensus        12 Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~L   91 (129)
                      +....+.+++..+..+...+..++..+......++++..+=.+..+ --||+-|=..+...+++++...++.+...+..|
T Consensus       409 ~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~C-p~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l  487 (880)
T PRK02224        409 NAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKC-PECGQPVEGSPHVETIEEDRERVEELEAELEDL  487 (880)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence            3444455556666666666666666666666666666532112233 349998877777788888888888887777777


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 045953           92 QASKEYLEKQKAEVESN  108 (129)
Q Consensus        92 ekq~~~Le~~l~e~e~~  108 (129)
                      +.....+++.++.++..
T Consensus       488 e~~l~~~~~~~e~l~~~  504 (880)
T PRK02224        488 EEEVEEVEERLERAEDL  504 (880)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777776666544433

>PHA02562 46 endonuclease subunit; Provisional

Probab=91.87  E-value=2.5  Score=36.29  Aligned_cols=33  Identities=12%  Similarity=0.180  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           10 FQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAY   42 (129)
Q Consensus        10 ~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~   42 (129)
                      +..+..+..+++.++..+...+..++.......
T Consensus       301 ~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~  333 (562)
T PHA02562        301 ITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN  333 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555554444444333

>PHA02562 46 endonuclease subunit; Provisional

Probab=91.07  E-value=4  Score=35.06  Aligned_cols=36  Identities=8%  Similarity=0.178  Sum_probs=22.4

Q ss_pred             hhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 045953           59 KSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKE   96 (129)
Q Consensus        59 k~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~   96 (129)
                      -.||+.|--.  +.....|.+.+..++.+++.++....
T Consensus       288 p~C~~~~~~~--~~~~~~l~d~i~~l~~~l~~l~~~i~  323 (562)
T PHA02562        288 PTCTQQISEG--PDRITKIKDKLKELQHSLEKLDTAID  323 (562)
T ss_pred             CCCCCcCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4467777544  66666666666666666666665555

>PRK01156 chromosome segregation protein; Provisional

Probab=90.72  E-value=11  Score=34.66  Aligned_cols=101  Identities=13%  Similarity=0.194  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHH
Q 045953            8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESA   87 (129)
Q Consensus         8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~   87 (129)
                      .-+.++..++.++...+..+...+..++..+.....+..+|+ ..   ++--.||+-.=..-+..+++++..+++.++.+
T Consensus       409 ~~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~-~~---~~Cp~c~~~~~~e~~~e~i~~~~~~i~~l~~~  484 (895)
T PRK01156        409 KELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN-GQ---SVCPVCGTTLGEEKSNHIINHYNEKKSRLEEK  484 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC---CCCCCCCCcCChhhHHHHHHHHHHHHHHHHHH
Confidence            345667777777888888888888888888888777777777 32   23333555333333556666777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           88 IAALQASKEYLEKQKAEVESNLAEL  112 (129)
Q Consensus        88 i~~Lekq~~~Le~~l~e~e~~Lrel  112 (129)
                      ++.|++....+...++..+..+..+
T Consensus       485 i~~l~~~~~~l~~~~~~~~~~~~~l  509 (895)
T PRK01156        485 IREIEIEVKDIDEKIVDLKKRKEYL  509 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777766666666555555443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=90.27  E-value=8.2  Score=35.19  Aligned_cols=106  Identities=16%  Similarity=0.203  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CCCchhhhhhhhhhhccChHHHHHHH
Q 045953            7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQL---------PDNTNTYKSIGRTFVLEPKSVLMNEQ   77 (129)
Q Consensus         7 ~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l---------~~dt~vYk~VGrmFv~~~k~~i~~eL   77 (129)
                      ++--.+||.++..+.+.-+.=++.+.++|+.++.-.-...+|++-         .+....-++++..  ...+.+--+.+
T Consensus       466 r~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~--~~~r~e~~e~~  543 (697)
T PF09726_consen  466 RQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQA--QATRQECAESC  543 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccc--hhccchhHHHH
Confidence            344445555555555555555555666666665544444444332         2222333333322  33445666678


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953           78 EQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ  114 (129)
Q Consensus        78 ~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~  114 (129)
                      +.+...+|.+++.|....+--+.++..++.+++++-.
T Consensus       544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~  580 (697)
T PF09726_consen  544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRK  580 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888765543

; GO: 0016021 integral to membrane

>PRK10884 SH3 domain-containing protein; Provisional

Probab=89.44  E-value=8.5  Score=29.87  Aligned_cols=82  Identities=10%  Similarity=0.177  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhh
Q 045953            4 EANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKD   83 (129)
Q Consensus         4 ~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~   83 (129)
                      +..+-.+-+++.++.+++.+++.++.+..+...+++..--.                         .+....+|+++...
T Consensus        89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~-------------------------~~~~~~~L~~~n~~  143 (206)
T PRK10884         89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQ-------------------------SDSVINGLKEENQK  143 (206)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHH
Confidence            44555666667777777777766665544333322221100                         23335556666667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           84 SESAIAALQASKEYLEKQKAEVESNLA  110 (129)
Q Consensus        84 ~e~~i~~Lekq~~~Le~~l~e~e~~Lr  110 (129)
                      +...+..+.++...++.++.+.+.+++
T Consensus       144 L~~~l~~~~~~~~~l~~~~~~~~~~~~  170 (206)
T PRK10884        144 LKNQLIVAQKKVDAANLQLDDKQRTII  170 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777776666666666666666665543

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=89.18  E-value=9.9  Score=30.31  Aligned_cols=103  Identities=19%  Similarity=0.262  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhh-hhccCh----HHHHHHHHH
Q 045953            5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRT-FVLEPK----SVLMNEQEQ   79 (129)
Q Consensus         5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrm-Fv~~~k----~~i~~eL~e   79 (129)
                      .+.+.+.+++..+-+...++......++.....+..++..+   ..+ .+.+-|...+.- .+..+.    .+-+.+|.+
T Consensus        42 ~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl---~~v-~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~  117 (239)
T COG1579          42 ALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL---SAV-KDERELRALNIEIQIAKERINSLEDELAELME  117 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555444444433   444 467788888873 333322    222333444


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           80 RLKDSESAIAALQASKEYLEKQKAEVESNLAE  111 (129)
Q Consensus        80 ~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre  111 (129)
                      +.+.++..+..+..+...+++.+.+.+..+.+
T Consensus       118 ~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~  149 (239)
T COG1579         118 EIEKLEKEIEDLKERLERLEKNLAEAEARLEE  149 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444433

>PRK03918 chromosome segregation protein; Provisional

Probab=88.21  E-value=18  Score=32.91  Aligned_cols=21  Identities=29%  Similarity=0.378  Sum_probs=8.2

Q ss_pred             HHHHHHHhhHHHHHHHHHHHH
Q 045953           75 NEQEQRLKDSESAIAALQASK   95 (129)
Q Consensus        75 ~eL~e~~~~~e~~i~~Lekq~   95 (129)
                      ..+..+...++..+..++...
T Consensus       310 ~~l~~~~~~l~~~~~~l~~~l  330 (880)
T PRK03918        310 REIEKRLSRLEEEINGIEERI  330 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333343333333

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=87.77  E-value=11  Score=33.58  Aligned_cols=98  Identities=14%  Similarity=0.215  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhh--hccChHHHHHHHHHHHhhH
Q 045953            7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTF--VLEPKSVLMNEQEQRLKDS   84 (129)
Q Consensus         7 ~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmF--v~~~k~~i~~eL~e~~~~~   84 (129)
                      .+.|.-+-.++-..+.+...+..++...+..-...+.+.+.-..|.+|.+.|++.=.-+  .....+..++.|.+.++.-
T Consensus       227 ~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~k  306 (581)
T KOG0995|consen  227 EKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEK  306 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            45566667778888888999999999888888888888888888999999998865543  4455788888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 045953           85 ESAIAALQASKEYLEKQKAE  104 (129)
Q Consensus        85 e~~i~~Lekq~~~Le~~l~e  104 (129)
                      ++++++|..+...|.++++.
T Consensus       307 EeE~e~lq~~~d~Lk~~Ie~  326 (581)
T KOG0995|consen  307 EEEIEKLQKENDELKKQIEL  326 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999998888887753

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=87.68  E-value=13  Score=35.96  Aligned_cols=52  Identities=21%  Similarity=0.408  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 045953            4 EANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNT   55 (129)
Q Consensus         4 ~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt   55 (129)
                      ..+++-|+++..+-......+..+.+.+..++.++........|+.+.|++.
T Consensus       387 ~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~  438 (1293)
T KOG0996|consen  387 ESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKA  438 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhh
Confidence            3577889999999999999999999999999999999999999999998764

>PRK02119 hypothetical protein; Provisional

Probab=87.16  E-value=5  Score=26.10  Aligned_cols=52  Identities=21%  Similarity=0.177  Sum_probs=34.3

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHhc
Q 045953           75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMSM  126 (129)
Q Consensus        75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~~  126 (129)
                      ..+++++..+|.++.=.+...+.|...+-..+..|..+-+.=..|+++|.+.
T Consensus         5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~   56 (73)
T PRK02119          5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM   56 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4466677777777776666666677767666766666666666666666553

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.13  E-value=15  Score=29.85  Aligned_cols=41  Identities=29%  Similarity=0.352  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL  112 (129)
Q Consensus        72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel  112 (129)
                      .+++.++++...++..-..++.+.+.|..-..+.+..+..|
T Consensus       148 ~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L  188 (265)
T COG3883         148 KILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSL  188 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555554444444444444444433

>PRK11637 AmiB activator; Provisional

Probab=87.10  E-value=17  Score=30.63  Aligned_cols=49  Identities=14%  Similarity=0.102  Sum_probs=33.6

Q ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 045953           70 KSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPG  118 (129)
Q Consensus        70 k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~  118 (129)
                      ...+++++......+......|+.+...++..+.+.+....++......
T Consensus       168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e  216 (428)
T PRK11637        168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNE  216 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777777777777777777777776666666666554433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=87.03  E-value=15  Score=29.99  Aligned_cols=42  Identities=24%  Similarity=0.341  Sum_probs=19.3

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953           74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ  115 (129)
Q Consensus        74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~  115 (129)
                      +..++.+....+..|....+....++.++..+...+.++-..
T Consensus       211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~  252 (325)
T PF08317_consen  211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQ  252 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444455555544444444444444444444444333

>PRK09039 hypothetical protein; Validated

Probab=86.74  E-value=17  Score=30.17  Aligned_cols=38  Identities=8%  Similarity=0.030  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953            8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTL   45 (129)
Q Consensus         8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~   45 (129)
                      ..+.+.....-+.+.++..+.+||+.+...+..++-.+
T Consensus       123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L  160 (343)
T PRK09039        123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAAL  160 (343)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555666666666665533333333

>PRK04406 hypothetical protein; Provisional

Probab=86.70  E-value=6.2  Score=25.87  Aligned_cols=52  Identities=15%  Similarity=0.220  Sum_probs=33.4

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHh
Q 045953           74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMS  125 (129)
Q Consensus        74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~  125 (129)
                      ++.+.+++..+|.++.=.+...+.|+..+-+.+..|..+-..=..|.++|.+
T Consensus         6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~   57 (75)
T PRK04406          6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN   57 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456667777777776666666666666666666666666555566666644

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=85.82  E-value=14  Score=28.22  Aligned_cols=46  Identities=11%  Similarity=0.140  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 045953            5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQ   50 (129)
Q Consensus         5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~   50 (129)
                      -|...+.++...+..+.+.+..+.+....+++.+..+.-...++..
T Consensus        27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~   72 (221)
T PF04012_consen   27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEK   72 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4668899999999999999999999999999888888776666554

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []

Probab=85.10  E-value=22  Score=29.91  Aligned_cols=111  Identities=15%  Similarity=0.092  Sum_probs=67.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCchhhhhhhhhhhccChHHHHHH
Q 045953            3 DEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQL------PDNTNTYKSIGRTFVLEPKSVLMNE   76 (129)
Q Consensus         3 d~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l------~~dt~vYk~VGrmFv~~~k~~i~~e   76 (129)
                      |.+|++-+.|++.-..+++-++..+..++...+..+...+.++.+-..-      -=+.+.|+|-....-    +..   
T Consensus       246 n~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcr----D~~---  318 (384)
T PF03148_consen  246 NAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCR----DPP---  318 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHH----hhH---
Confidence            4566677777777777777777777777777777777777776665421      002344444443322    222   


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 045953           77 QEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIM  124 (129)
Q Consensus        77 L~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~  124 (129)
                          ...+-.++..|......|..++.+++.+++.+......|-..|.
T Consensus       319 ----q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~  362 (384)
T PF03148_consen  319 ----QYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIA  362 (384)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                22333344555555666667777777777777777766666654

The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=83.96  E-value=16  Score=27.38  Aligned_cols=86  Identities=24%  Similarity=0.273  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 045953           25 KQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAE  104 (129)
Q Consensus        25 ~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e  104 (129)
                      ..|.+|+..++-+-++..-...||+.+.+               |.-.-+..+..+++..+-+++.|-..-..=++.+++
T Consensus        52 ekVq~~LgrveEetkrLa~ireeLE~l~d---------------P~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEyke  116 (159)
T PF04949_consen   52 EKVQAQLGRVEEETKRLAEIREELEVLAD---------------PMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKE  116 (159)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhhcc---------------chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            34556677777778888888888887742               444556678888999999999988888888888888


Q ss_pred             HHHHHHHHHcCChhHHHHHHh
Q 045953          105 VESNLAELLQQDPGLAQQIMS  125 (129)
Q Consensus       105 ~e~~Lrell~~~~~~~~~~~~  125 (129)
                      ....+.|.-..+..|+-.||.
T Consensus       117 alea~nEknkeK~~Lv~~L~e  137 (159)
T PF04949_consen  117 ALEAFNEKNKEKAQLVTRLME  137 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            888888888778888888874

This entry represents proteins annotated as RAB6-interacting golgins.

>PF13758 Prefoldin_3: Prefoldin subunit

Probab=83.94  E-value=6.1  Score=27.49  Aligned_cols=37  Identities=14%  Similarity=0.230  Sum_probs=25.6

Q ss_pred             hccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045953           66 VLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQK  102 (129)
Q Consensus        66 v~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l  102 (129)
                      |..+++.+++=|.-+++-...-|.+|+|+...-+.++
T Consensus        62 i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~~aE~kl   98 (99)
T PF13758_consen   62 ITRTREQVVDVLSRRIDYVQQNIETLEKQLEAAENKL   98 (99)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5567777777777777777777777777666555543

>TIGR00606 rad50 rad50

Probab=83.86  E-value=20  Score=34.72  Aligned_cols=47  Identities=11%  Similarity=0.170  Sum_probs=22.3

Q ss_pred             HHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHcCChhHHH
Q 045953           75 NEQEQRLKDSESAIAAL-------QASKEYLEKQKAEVESNLAELLQQDPGLAQ  121 (129)
Q Consensus        75 ~eL~e~~~~~e~~i~~L-------ekq~~~Le~~l~e~e~~Lrell~~~~~~~~  121 (129)
                      ++|.+.+..++..+..+       ......++..+..++..+.++-..+-.++.
T Consensus       825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~  878 (1311)
T TIGR00606       825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT  878 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444       555555555555554444443333333433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02977 phageshock_pspA phage shock protein A

Probab=83.84  E-value=18  Score=27.91  Aligned_cols=46  Identities=13%  Similarity=0.167  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 045953            5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQ   50 (129)
Q Consensus         5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~   50 (129)
                      -|...+.+|...+....+.+..+.+....+++.+..+.-...++..
T Consensus        28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~   73 (219)
T TIGR02977        28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQE   73 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5889999999999999999999999998888888877766665543

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PRK02793 phi X174 lysis protein; Provisional

Probab=83.00  E-value=9.3  Score=24.74  Aligned_cols=49  Identities=24%  Similarity=0.226  Sum_probs=25.4

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHh
Q 045953           77 QEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMS  125 (129)
Q Consensus        77 L~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~  125 (129)
                      +++++..+|.++.=.+...+.|..-+-+.+..|..+-..=..|.++|.+
T Consensus         6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~   54 (72)
T PRK02793          6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA   54 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455555555555555555555555555555555444444445555544

>PRK04325 hypothetical protein; Provisional

Probab=82.88  E-value=9.2  Score=24.90  Aligned_cols=48  Identities=25%  Similarity=0.151  Sum_probs=21.9

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 045953           77 QEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIM  124 (129)
Q Consensus        77 L~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~  124 (129)
                      +.+++..+|.++.=.+...+.|..-+-+.+..|..+-..=..|..+|.
T Consensus         7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~   54 (74)
T PRK04325          7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR   54 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444444433334444443

>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]

Probab=82.33  E-value=31  Score=32.18  Aligned_cols=62  Identities=8%  Similarity=0.229  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhcc
Q 045953            4 EANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLE   68 (129)
Q Consensus         4 ~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~   68 (129)
                      +++++...+|-....+-++.+.....++..+++..-++.+++.+-+.+   ..+|++||.+||-.
T Consensus       202 ~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~~l~~ae~~---~~~w~pvgdl~ids  263 (966)
T KOG4286|consen  202 EEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEVI---KGSWQPVGDLLIDS  263 (966)
T ss_pred             HHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh---hhccccHHHHHHhH
Confidence            355566666777777888889999999999999999999999988876   35899999999854

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=82.15  E-value=43  Score=31.08  Aligned_cols=33  Identities=21%  Similarity=0.272  Sum_probs=13.6

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           77 QEQRLKDSESAIAALQASKEYLEKQKAEVESNL  109 (129)
Q Consensus        77 L~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~L  109 (129)
                      +..+...+..++..++.+...+...+.++...+
T Consensus       453 l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l  485 (1164)
T TIGR02169       453 QEWKLEQLAADLSKYEQELYDLKEEYDRVEKEL  485 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333343444444444444444444444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=81.71  E-value=25  Score=28.07  Aligned_cols=29  Identities=7%  Similarity=0.185  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045953           20 NTGKMKQVQNQMRNKEGEKKRAYLTLEEL   48 (129)
Q Consensus        20 ~qqql~~v~~Q~~~~e~~~r~~~lT~~EL   48 (129)
                      ....+..+...+..++.+....+..+.++
T Consensus        43 ~~~~~~~~~~e~e~le~qv~~~e~ei~~~   71 (239)
T COG1579          43 LNKALEALEIELEDLENQVSQLESEIQEI   71 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=81.35  E-value=61  Score=32.31  Aligned_cols=103  Identities=14%  Similarity=0.214  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHH----------HH
Q 045953            6 NRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVL----------MN   75 (129)
Q Consensus         6 l~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i----------~~   75 (129)
                      +++.+.+.+.++.+..+.+..+...+..++..+.+.+..+.+|.- |.+...=...-     ..++++          .+
T Consensus      1004 areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~-~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~ 1077 (1486)
T PRK04863       1004 AREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGV-PADSGAEERAR-----ARRDELHARLSANRSRRN 1077 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccHHHHHH-----HhHHHHHHHHHHhHHHHH
Confidence            345566666666666666666667777777777777777777763 33332211110     012222          23


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953           76 EQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ  114 (129)
Q Consensus        76 eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~  114 (129)
                      .|......++.+|+.|.++...+++.+++....|..+-.
T Consensus      1078 ~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~ 1116 (1486)
T PRK04863       1078 QLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKA 1116 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555556666666666666666555555554443

>PRK00295 hypothetical protein; Provisional

Probab=81.32  E-value=10  Score=24.27  Aligned_cols=39  Identities=21%  Similarity=0.206  Sum_probs=17.8

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL  112 (129)
Q Consensus        74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel  112 (129)
                      +.+|+.++.-.+.-|..|......-++.+..++.+++.+
T Consensus         7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L   45 (68)
T PRK00295          7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL   45 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444444433

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=80.74  E-value=8.1  Score=24.33  Aligned_cols=54  Identities=9%  Similarity=0.132  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCchhhh
Q 045953            6 NRAAFQEIKGRMIENTGKMKQVQNQMRNK-EGEKKRAYLTLEELRQLPDNTNTYK   59 (129)
Q Consensus         6 l~k~~~Elq~k~~~~qqql~~v~~Q~~~~-e~~~r~~~lT~~EL~~l~~dt~vYk   59 (129)
                      ++..+.+++.++..++.....+..++..+ ...-..-+.+.+.+.=..||..+|+
T Consensus        22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~~~E~v~~   76 (80)
T PF04977_consen   22 LNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMVKPGEIVFK   76 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcCCCCEEEe
Confidence            34445555555555555555555555555 3333333455556666666666664

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PF15369 KIAA1328: Uncharacterised protein KIAA1328

Probab=80.62  E-value=12  Score=31.12  Aligned_cols=60  Identities=20%  Similarity=0.331  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           37 EKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAE  111 (129)
Q Consensus        37 ~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre  111 (129)
                      +++++.--++||..+.+               .++.+..+|+...+.++.+|..|+.+..-+-+.-++++.+-||
T Consensus         6 dk~ri~~li~~la~~~~---------------~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyre   65 (328)
T PF15369_consen    6 DKRRIANLIKELARVSE---------------EKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRE   65 (328)
T ss_pred             HHHHHHHHHHHHHHhhh---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            35666666778877753               6888999999999999999999999999888888888877764

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=80.07  E-value=12  Score=23.95  Aligned_cols=42  Identities=21%  Similarity=0.328  Sum_probs=27.0

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953           74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ  115 (129)
Q Consensus        74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~  115 (129)
                      +..++.+.+..+.++..|+......+...++...+|.++-..
T Consensus         8 l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n   49 (71)
T PF10779_consen    8 LNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN   49 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666666667777777777777666666666665543

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=80.02  E-value=55  Score=31.51  Aligned_cols=91  Identities=14%  Similarity=0.289  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHH
Q 045953            6 NRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSE   85 (129)
Q Consensus         6 l~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e   85 (129)
                      +++.|......+.+...+++.+...+.........++.+...+..-.     -.         +...-..+..++.+.++
T Consensus       342 ~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~-----~~---------~~~~~~~e~e~k~~~L~  407 (1074)
T KOG0250|consen  342 ARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT-----NN---------ELGSELEERENKLEQLK  407 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----Hh---------hhhhhHHHHHHHHHHHH
Confidence            34555555555666666666666666666666666666655554321     11         22233444555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           86 SAIAALQASKEYLEKQKAEVESNLA  110 (129)
Q Consensus        86 ~~i~~Lekq~~~Le~~l~e~e~~Lr  110 (129)
                      .++++++.+...|...+++....++
T Consensus       408 ~evek~e~~~~~L~~e~~~~~~~~~  432 (1074)
T KOG0250|consen  408 KEVEKLEEQINSLREELNEVKEKAK  432 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	1e-07

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A Length = 117

 Score = 45.7 bits (108), Expect = 1e-07
 Identities = 23/104 (22%), Positives = 52/104 (50%)

Query: 11  QEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPK 70
           Q + G++     +++ V  Q +  + E   A   L+E+  LPD+   YK++G   V   K
Sbjct: 9   QAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTK 68

Query: 71  SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114
              + E +++++  E  + AL+  ++ L ++  E+ + +   L+
Sbjct: 69  DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	99.89
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	99.86
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	98.98
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	98.94
3aei_A	99	Prefoldin beta subunit 2; double helix, coiled coi	95.92
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	95.84
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	95.58
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	94.98
2pnv_A	43	Small conductance calcium-activated potassium chan	93.91
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	93.36
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	85.96
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	85.43
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	85.04
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	84.1
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	82.56
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	82.46
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	82.41
2yko_A	233	LINE-1 ORF1P; RNA-binding protein, genome evolutio	81.24

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=99.89  E-value=1.2e-22  Score=141.55  Aligned_cols=114  Identities=20%  Similarity=0.320  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhH
Q 045953            5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDS   84 (129)
Q Consensus         5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~   84 (129)
                      ++.+.++++..++..++++++.+..++..++.+++++.+|.+||..+|+|++||++||++||..|++++...|+++++.+
T Consensus         3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~i   82 (117)
T 2zqm_A            3 NIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETL   82 (117)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence            44567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 045953           85 ESAIAALQASKEYLEKQKAEVESNLAELLQQDPG  118 (129)
Q Consensus        85 e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~  118 (129)
                      +.+|+.|+++.+++++++++++.+|+++++++|+
T Consensus        83 e~~i~~le~~~~~l~~~l~~lk~~l~~~~~~~~~  116 (117)
T 2zqm_A           83 EVRLNALERQEKKLNEKLKELTAQIQSALRPPTA  116 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999999999988763

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=99.86  E-value=3.3e-21  Score=132.52  Aligned_cols=105  Identities=20%  Similarity=0.277  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHH
Q 045953           10 FQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIA   89 (129)
Q Consensus        10 ~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~   89 (129)
                      |+++..++..++++++.+.+++..++++++++.+|.+||+.+|+|++||++||.+||..|++++...|+++.+.++.+|+
T Consensus         3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~   82 (107)
T 1fxk_A            3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREK   82 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            67888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953           90 ALQASKEYLEKQKAEVESNLAELLQ  114 (129)
Q Consensus        90 ~Lekq~~~Le~~l~e~e~~Lrell~  114 (129)
                      .|+++.+++++++++++.+|+++++
T Consensus        83 ~le~~~~~~~~~l~~lk~~l~~~~~  107 (107)
T 1fxk_A           83 TIERQEERVMKKLQEMQVNIQEAMK  107 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999998763

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=98.98  E-value=2.1e-09  Score=77.96  Aligned_cols=109  Identities=20%  Similarity=0.224  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCC-CCchhhhhhh--------------------
Q 045953            7 RAAFQEIKGRMIENTGKMKQVQNQMRNK---EGEKKRAYLTLEELRQLP-DNTNTYKSIG--------------------   62 (129)
Q Consensus         7 ~k~~~Elq~k~~~~qqql~~v~~Q~~~~---e~~~r~~~lT~~EL~~l~-~dt~vYk~VG--------------------   62 (129)
                      .+.+.++......+++.+..+..++..+   ...+.++..+++.|..++ ++..+|.++|                    
T Consensus         8 ~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG   87 (151)
T 2zdi_C            8 NKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVG   87 (151)
T ss_dssp             TTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeC
Confidence            4457777888888999999999999999   999999999999999999 8999999977                    


Q ss_pred             -hhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953           63 -RTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ  115 (129)
Q Consensus        63 -rmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~  115 (129)
                       ..||..|.++.++-++.+++.++..++.+++....+..++...+.+|+++.+.
T Consensus        88 ~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~  141 (151)
T 2zdi_C           88 SGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK  141 (151)
T ss_dssp             TTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred             CCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             48999999999999999999999999999999999999999999999999865

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=98.94  E-value=1e-08  Score=72.54  Aligned_cols=106  Identities=14%  Similarity=0.185  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCch--------------------hhhhhhh-hhh
Q 045953           10 FQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLP--DNTN--------------------TYKSIGR-TFV   66 (129)
Q Consensus        10 ~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~--~dt~--------------------vYk~VGr-mFv   66 (129)
                      +++++......++.+..+..++..+...+.+..-+++.|+.++  ++..                    ||-.||- .||
T Consensus         3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~v   82 (133)
T 1fxk_C            3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAI   82 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEE
Confidence            4667777888999999999999999999999999999988887  4544                    6677995 999


Q ss_pred             ccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953           67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ  115 (129)
Q Consensus        67 ~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~  115 (129)
                      ..|.++.++-|+.+++.++..++.+++....+..++..++..|++++++
T Consensus        83 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~  131 (133)
T 1fxk_C           83 KKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA  131 (133)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999864

>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}

Probab=95.92  E-value=0.15  Score=33.48  Aligned_cols=88  Identities=13%  Similarity=0.108  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 045953           17 MIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKE   96 (129)
Q Consensus        17 ~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~   96 (129)
                      ..+++=.+++++.=.+.++-..++.+.+.-=+..+..+.++|++....+|..++++.+++++--.=...-+|..|.++++
T Consensus         6 ayel~lel~qir~lr~~~elkmkeleyaegiit~~k~er~~yraf~dllveitkdeaiehier~rl~ykreie~l~~~ek   85 (99)
T 3aei_A            6 AYELQLELQQIRTLRQSLELKMKELEYAEGIITSLKSERRIYRAFSDLLVEITKDEAIEHIERSRLVYKREIEKLKKREK   85 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCSCCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666666677788888888888889999999999999999999999999999998887788888999988888


Q ss_pred             HHHHHHHH
Q 045953           97 YLEKQKAE  104 (129)
Q Consensus        97 ~Le~~l~e  104 (129)
                      .+-..+..
T Consensus        86 eime~ls~   93 (99)
T 3aei_A           86 EIMEELSK   93 (99)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77766654

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=95.84  E-value=0.22  Score=33.23  Aligned_cols=103  Identities=16%  Similarity=0.261  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHH
Q 045953            8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESA   87 (129)
Q Consensus         8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~   87 (129)
                      |.+-++.....+....+..+...+..++..+......+.++...++.=|   -||.-.=......++++.......+...
T Consensus         3 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CP---vCgs~l~~~~~~~~i~~~~~~l~~l~~~   79 (112)
T 1l8d_A            3 KLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCP---VCGRELTDEHREELLSKYHLDLNNSKNT   79 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECT---TTCCEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC---CCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555666666666777777777777777777778876321112   2344332233456788888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           88 IAALQASKEYLEKQKAEVESNLAELL  113 (129)
Q Consensus        88 i~~Lekq~~~Le~~l~e~e~~Lrell  113 (129)
                      +..|..+...++..++.+...+++++
T Consensus        80 i~~l~~~i~~l~~~~~~l~~~~~~~~  105 (112)
T 1l8d_A           80 LAKLIDRKSELERELRRIDMEIKRLT  105 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888887443

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=95.58  E-value=0.064  Score=36.03  Aligned_cols=101  Identities=10%  Similarity=0.018  Sum_probs=73.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCchhhhhhhhhhhccChHHHHHHHHHH
Q 045953            3 DEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEEL--RQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQR   80 (129)
Q Consensus         3 d~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL--~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~   80 (129)
                      +.++-..|+.++.++..+..++..+..++...+..+.+.......=  -..=+  +||-..-.--+....+.-++.++..
T Consensus         8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG--~vfv~~~~~ea~~~L~~~~e~ie~~   85 (117)
T 2zqm_A            8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVG--TLIVKTTKDKAVAELKEKIETLEVR   85 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEET--TEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhh--HHHhhccHHHHHHHHHHHHHHHHHH
Confidence            4556678888888888888888888888888888887777665431  11112  3454444555566777778888888


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHH
Q 045953           81 LKDSESAIAALQASKEYLEKQKAEV  105 (129)
Q Consensus        81 ~~~~e~~i~~Lekq~~~Le~~l~e~  105 (129)
                      ++.++..+..++++-..++..+.+.
T Consensus        86 i~~le~~~~~l~~~l~~lk~~l~~~  110 (117)
T 2zqm_A           86 LNALERQEKKLNEKLKELTAQIQSA  110 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888877654

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=94.98  E-value=0.13  Score=34.02  Aligned_cols=98  Identities=11%  Similarity=0.097  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHh
Q 045953            5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEE--LRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLK   82 (129)
Q Consensus         5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~E--L~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~   82 (129)
                      ++-+.|+.++.++..+..+++.+..++...+..+.+..+..+.  +-.+=+  +||-..-.--+....+.-++.++..++
T Consensus         5 ~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG--~vfv~~~~~e~~~~L~~~~e~i~~~i~   82 (107)
T 1fxk_A            5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSG--NILIRVAKDELTEELQEKLETLQLREK   82 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEET--TEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHh--HHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999888888876543  222222  344444555567777888888899999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q 045953           83 DSESAIAALQASKEYLEKQKAE  104 (129)
Q Consensus        83 ~~e~~i~~Lekq~~~Le~~l~e  104 (129)
                      .++..+..++++-..++..+.+
T Consensus        83 ~le~~~~~~~~~l~~lk~~l~~  104 (107)
T 1fxk_A           83 TIERQEERVMKKLQEMQVNIQE  104 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998888887753

>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}

Probab=93.91  E-value=0.18  Score=29.10  Aligned_cols=35  Identities=20%  Similarity=0.174  Sum_probs=30.3

Q ss_pred             ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 045953           69 PKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKA  103 (129)
Q Consensus        69 ~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~  103 (129)
                      ..-+++.++..+.+.+|.||.+|+.+...|...+.
T Consensus         6 ~mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~   40 (43)
T 2pnv_A            6 IMYDMISDLNERSEDFEKRIVTLETKLETLIGSIH   40 (43)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578999999999999999999999888887764

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=93.36  E-value=2.1  Score=34.75  Aligned_cols=41  Identities=12%  Similarity=0.255  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL  112 (129)
Q Consensus        72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel  112 (129)
                      .+.+.|+.++...+.+|+.|+.+.+.|+.++++...++.++
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (471)
T 3mq9_A          429 ALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL  469 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56677888888888899999999999999999999888775

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=85.96  E-value=2.3  Score=24.22  Aligned_cols=27  Identities=19%  Similarity=0.335  Sum_probs=12.4

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 045953           73 LMNEQEQRLKDSESAIAALQASKEYLE   99 (129)
Q Consensus        73 i~~eL~e~~~~~e~~i~~Lekq~~~Le   99 (129)
                      =.++|..+...++++|.+|++.-..|.
T Consensus        11 r~k~le~~naeLEervstLq~EN~mLR   37 (42)
T 2oqq_A           11 RVKDLENKNSELEERLSTLQNENQMLR   37 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            334444444444555555544444433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=85.43  E-value=10  Score=28.69  Aligned_cols=10  Identities=10%  Similarity=0.225  Sum_probs=6.7

Q ss_pred             Cchhhhhhhh
Q 045953           54 NTNTYKSIGR   63 (129)
Q Consensus        54 dt~vYk~VGr   63 (129)
                      +.+-|.++.+
T Consensus        88 ~~kE~~aL~k   97 (256)
T 3na7_A           88 SERELRSLNI   97 (256)
T ss_dssp             SSSHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            5667777665

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=85.04  E-value=6.2  Score=36.20  Aligned_cols=35  Identities=9%  Similarity=0.117  Sum_probs=14.6

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNL  109 (129)
Q Consensus        75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~L  109 (129)
                      .+|+++++.++..+.++.+..+.++....+++..|
T Consensus       987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L 1021 (1080)
T 2dfs_A          987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444443333333

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=84.10  E-value=8.8  Score=32.86  Aligned_cols=42  Identities=10%  Similarity=0.122  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           71 SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL  112 (129)
Q Consensus        71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel  112 (129)
                      .+|-++|+.++..++.+|..--.+..-|+..|++.-..|+.|
T Consensus       109 nE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRL  150 (562)
T 3ghg_A          109 NRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL  150 (562)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445557777777777777666666666666666666655543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=82.56  E-value=22  Score=32.66  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=17.6

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           73 LMNEQEQRLKDSESAIAALQASKEYLEKQKAEVES  107 (129)
Q Consensus        73 i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~  107 (129)
                      +.++|.+++..++.....|+.+...|+..+.+.+.
T Consensus      1017 ~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A         1017 YKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555555555555555555555544444444

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=82.46  E-value=18  Score=33.29  Aligned_cols=36  Identities=17%  Similarity=0.188  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953            7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAY   42 (129)
Q Consensus         7 ~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~   42 (129)
                      .+.+.++..++......+..+..++..++.++..+.
T Consensus       863 ~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~  898 (1184)
T 1i84_S          863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ  898 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=82.41  E-value=27  Score=35.90  Aligned_cols=56  Identities=16%  Similarity=0.175  Sum_probs=47.8

Q ss_pred             cChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 045953           68 EPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQI  123 (129)
Q Consensus        68 ~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~  123 (129)
                      .|+..-+.+++++.+.+..++...+.+...++.++..++.++.++++.+..|..++
T Consensus      2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~ 2065 (3245)
T 3vkg_A         2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTES 2065 (3245)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888999999999999999999999999999999999999988887777666554

>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A

Probab=81.24  E-value=4.5  Score=31.05  Aligned_cols=40  Identities=23%  Similarity=0.393  Sum_probs=30.6

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953           74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL  113 (129)
Q Consensus        74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell  113 (129)
                      ++++++++..+++++..+....+..++.++..+.+|+|+-
T Consensus         8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~   47 (233)
T 2yko_A            8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIW   47 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667778888888888777777777777777777777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	129
d1fxka_	107	a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Meth	5e-06

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 107

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 40.5 bits (95), Expect = 5e-06
 Identities = 21/106 (19%), Positives = 46/106 (43%)

Query: 9   AFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLE 68
             Q    +  +   + + +  Q +  E +       LEEL +  D+   YKS G   +  
Sbjct: 2   NVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRV 61

Query: 69  PKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114
            K  L  E +++L+  +     ++  +E + K+  E++ N+ E ++
Sbjct: 62  AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAMK 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	99.84
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	98.26
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	93.82
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	86.3

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.84  E-value=5.6e-21  Score=130.94  Aligned_cols=106  Identities=20%  Similarity=0.274  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHH
Q 045953            9 AFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAI   88 (129)
Q Consensus         9 ~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i   88 (129)
                      .+++...++..++++++.+.+|+.+++.++++++++++||..+|||++||+.||.+||..|+++++.+|.++++.++.+|
T Consensus         2 ~lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i   81 (107)
T d1fxka_           2 NVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLRE   81 (107)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHH
Confidence            46788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953           89 AALQASKEYLEKQKAEVESNLAELLQ  114 (129)
Q Consensus        89 ~~Lekq~~~Le~~l~e~e~~Lrell~  114 (129)
                      ++|+++.+++++++++.+.+|+++++
T Consensus        82 ~~l~~q~~~l~~~l~~~~~~l~~~~k  107 (107)
T d1fxka_          82 KTIERQEERVMKKLQEMQVNIQEAMK  107 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999998763

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.26  E-value=8.2e-06  Score=55.56  Aligned_cols=105  Identities=14%  Similarity=0.187  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCc--------------------hhhhhhhh-hhh
Q 045953           10 FQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLP--DNT--------------------NTYKSIGR-TFV   66 (129)
Q Consensus        10 ~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~--~dt--------------------~vYk~VGr-mFv   66 (129)
                      +.||..++...+++++.+.+++..+...+.+...+.+-|+.++  ++.                    +++-+||. .||
T Consensus         3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~v   82 (133)
T d1fxkc_           3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAI   82 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCeee
Confidence            5666777777777777777777777777777776666665553  222                    34444444 478


Q ss_pred             ccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953           67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ  114 (129)
Q Consensus        67 ~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~  114 (129)
                      ..|.++.++-++.+++.++..++.|.+....++.++.+.+..++++++
T Consensus        83 E~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~  130 (133)
T d1fxkc_          83 KKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA  130 (133)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999999875

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.82  E-value=0.13  Score=32.89  Aligned_cols=98  Identities=11%  Similarity=0.046  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCchhhhhhhhhhhccChHHHHHHHHHHHh
Q 045953            5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEEL--RQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLK   82 (129)
Q Consensus         5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL--~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~   82 (129)
                      +.-.-|+.+|.++....++++.+.+++.-.+..+........+-  =.+-++.=|=.+++  =+..+..+=++.|+.+++
T Consensus         5 e~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~--e~~~~l~~~~e~l~~~i~   82 (107)
T d1fxka_           5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKD--ELTEELQEKLETLQLREK   82 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHH--HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHH--HHHHHHHHHHHHHHHHHH
Confidence            45567999999999999999999999999888888877655431  11222222223333  345566677788899999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q 045953           83 DSESAIAALQASKEYLEKQKAE  104 (129)
Q Consensus        83 ~~e~~i~~Lekq~~~Le~~l~e  104 (129)
                      .++..++.++++-..+++++.+
T Consensus        83 ~l~~q~~~l~~~l~~~~~~l~~  104 (107)
T d1fxka_          83 TIERQEERVMKKLQEMQVNIQE  104 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988865

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=86.30  E-value=0.5  Score=30.67  Aligned_cols=101  Identities=14%  Similarity=0.177  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhh-hhhh---------hhhccChHH-------------
Q 045953           16 RMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYK-SIGR---------TFVLEPKSV-------------   72 (129)
Q Consensus        16 k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk-~VGr---------mFv~~~k~~-------------   72 (129)
                      .+.++..+++.+..++..+...+........|+..+-+.-.... +.|.         +||.....+             
T Consensus         2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~   81 (133)
T d1fxkc_           2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVA   81 (133)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCee
Confidence            35678889999999999999999999999999987754433333 2332         344433332             


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 045953           73 LMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQD  116 (129)
Q Consensus        73 i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~  116 (129)
                      +.....+-.+-++.+++.|++..+.+.+.+...+.++.++...-
T Consensus        82 vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~  125 (133)
T d1fxkc_          82 IKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQA  125 (133)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23567788888999999999999999999999999998877543