Citrus Sinensis ID: 046111

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520
Protein Sequence
MIVRAGFLVAASIAAYAVKQLNLKASNSSAPLTKPSGNGEARFEQQQSQGKEKQQFTCPDGGLREKKREEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPIDKFDEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDTDLESNFSHPSSPGSEDFDNASIDSSTSKYSNLSKKPSLIQKLKKWGKSKDDTSALSSPARSISGCSPSRMSMSHRPRGPLESLMLRNTSDSVAITTFGKMDQELA
Secondary Structure (PSIPRED)
cEEHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHcHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHcccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccccHHHHHHHHHHHHHcHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEHHHcccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHEcccccEEEEEccccccccc
Coil and Loop (DISEMBL)
MIVRAGFLVAASIAAYAVKQLNlkasnssapltkpsgngearFEQQQSqgkekqqftcpdgglrekkreeeEEEEEVKLISSIFdrargsssntddedilpEFEDLLSGeieyqlpidkfdeaeknkvyETEMADNARELERLRSLVLELQEREVKLEGELLEyyglkeqeSDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVNACLRYELRnyqapagktsardlnkslspkSQERAKQLMLEYagsergqvdtdlesnfshpsspgsedfdnasidsstskysnlskkpSLIQKLKKwgkskddtsalssparsisgcspsrmsmshrprgpleslmlrntSDSVAITTFgkmdqela
Flexible Loop (DISEMBL)
MIVRAGFLVAASIAAYAVKQLNLKASNSSAPLTKPSGNGEARFEQqqsqgkekqqftcpdgglrekkreeeeeeeEVKLissifdrargsssntddediLPEFEDLLSGEIEYQLPIDKFDEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEyyglkeqesdiVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEeeaikkdvelekklksvkdlevevvelkrknkelqiekrellvkldaaeskiaslsnmtesekVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVNACLRYELRNyqapagktsardlnkslspKSQERAKQLMLEYAGSERGQVDTDLESNFSHpsspgsedfdnASIDSStskysnlskkpsLIQKLKKwgkskddtsalssparsisgcspsrmsmsHRPRGPLESLMLRNTSDSVAITTFGKMDQELA
Low Complexity Region (SEG)
MIVRAGFLVAASIAAYAVKQLNLKASNSSAPLTKPSGNGEARFeqqqsqgkekqqFTCPDGGLrekkreeeeeeeeVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPIDKFDEAEKNKVYETEMADNArelerlrslvlelqereVklegelleyyglkeQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANqtkgqllllkqqvsglqAKEEEAIkkdvelekklksvkdlevevvelkrknkelQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDTDLESNFSHPSSPGSEDFDNASIDSSTSKYSNLSKKPSLIQKLKKWGKSKDDTSALSSPARSISGCspsrmsmshrprGPLESLMLRNTSDSVAITTFGKMDQELA
Disordered region (IsUnstruct)
**VRAGFLVAASIAAYAVKQLN*********************************************************************************EDLLSGEIEYQLPIDKF********************ERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQ*******************************************QLLLL********************************VEVV****************L**************************************LLKQVEGLQMNRFGEVEELVYLRWVNACLRYELRNYQ*************************************************************************************************************************************************
Disordered Region (DISOPRED)
MIVRAGFLVAASIAAYA************************************************************************************************************************************************************************************************************************************************************************************************************************************************VEELVYLRWVNAC**********************************************************************************************************************************************************
Disordered Region (DISEMBL)
MIVRAGFLVAASIAAYAVKQLNLKASNS*****************************CPDGGL***************LISSIFDR*********DEDILPEFEDLLSGEIEYQLPIDKFDEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDTDL***************DNASIDSSTSKYSNLSKKPSLIQKL**********************************RGPLESLMLRNTSDSVAITTFGKMDQELA
Disordered Region (DISPRO)
MIVRAGFLVAASIAAYAVKQLNL***********************************PDGG*REKKREEEEEEEEVKLISSIFDRAR***SNTDDEDILPEFEDLLSGEIEYQLPIDKFDEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQ****Q****YAG******************************************KPSLIQKLKKWG*******************************GPLESLMLRNTSDSVAITTFGK******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIVRAGFLVAASIAAYAVKQLNLKASNSSAPLTKPSGNGEARFEQQQSQGKEKQQFTCPDGGxxxxxxxxxxxxxxxxxxxxxFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPIDKFDEAEKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLLEYYGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTKGQLLLLKQQVSGLQAKEEEAIKKDVExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRFGEVEELVYLRWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDTDLESNFSHPSSPGSEDFDNASIDSSTSKYSNLSKKPSLIQKLKKWGKSKDDTSALSSPARSISGCSPSRMSMSHRPRGPLESLMLRNTSDSVAITTFGKMDQELA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	520	2.2.26 [Sep-21-2011]
Q9LI74	1004	Protein CHUP1, chloroplas	yes	no	0.971	0.502	0.736	0.0

>sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/523 (73%), Positives = 443/523 (84%), Gaps = 18/523 (3%)

Query: 1   MIVRAGFLVAASIAAYAVKQLNLKASNSSAPLTKPSGNGEARFEQQQSQGKEKQQFTCPD 60
           M VR GF+VAASIAA  VK+LN+K S  S    KPS NGE         G +K+Q   PD
Sbjct: 1   MFVRIGFVVAASIAAVTVKRLNVKPSKPS----KPSDNGE---------GGDKEQSVDPD 47

Query: 61  GGLREK--KREEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPID 118
             L +K  + EEEEEEEEVKLI+S+ ++ RGS S+  D+DILPEFEDLLSGEIEY LP D
Sbjct: 48  YNLNDKNLQEEEEEEEEEVKLINSVINQTRGSFSDYLDDDILPEFEDLLSGEIEYPLPDD 107

Query: 119 --KFDEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVE 176
               ++AEK + YE EMA N  ELERL+ LV EL+EREVKLEGELLEYYGLKEQESDIVE
Sbjct: 108 DNNLEKAEKERKYEVEMAYNDGELERLKQLVKELEEREVKLEGELLEYYGLKEQESDIVE 167

Query: 177 LQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLD 236
           LQRQLKIKTVEIDMLNITINSLQAERKKLQE+++Q+  V+KELEVARNKIKELQRQIQLD
Sbjct: 168 LQRQLKIKTVEIDMLNITINSLQAERKKLQEELSQNGIVRKELEVARNKIKELQRQIQLD 227

Query: 237 ANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEK 296
           ANQTKGQLLLLKQ VS LQ KEEEA+ KD E+E+KLK+V+DLEV+V+ELKRKN+ELQ EK
Sbjct: 228 ANQTKGQLLLLKQHVSSLQMKEEEAMNKDTEVERKLKAVQDLEVQVMELKRKNRELQHEK 287

Query: 297 RELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEE 356
           REL +KLD+AE++IA+LSNMTES+KVAK REEVNNL+H N+DLLKQVEGLQMNRF EVEE
Sbjct: 288 RELSIKLDSAEARIATLSNMTESDKVAKVREEVNNLKHNNEDLLKQVEGLQMNRFSEVEE 347

Query: 357 LVYLRWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDTD 416
           LVYLRWVNACLRYELRNYQ PAGK SARDL+K+LSPKSQ +AK+LMLEYAGSERGQ DTD
Sbjct: 348 LVYLRWVNACLRYELRNYQTPAGKISARDLSKNLSPKSQAKAKRLMLEYAGSERGQGDTD 407

Query: 417 LESNFSHPSSPGSEDFDNASIDSSTSKYSNLSKKPSLIQKLKKWGKSKDDTSALSSPARS 476
           LESN+S PSSPGS+DFDNAS+DSSTS++S+ SKKP LIQKLKKWGKSKDD+S  SSP+RS
Sbjct: 408 LESNYSQPSSPGSDDFDNASMDSSTSRFSSFSKKPGLIQKLKKWGKSKDDSSVQSSPSRS 467

Query: 477 ISGCSPSRMSMS-HRPRGPLESLMLRNTSDSVAITTFGKMDQE 518
             G SP R+S S ++ RGPLESLM+RN  +SVAITTFG++DQE
Sbjct: 468 FYGGSPGRLSSSMNKQRGPLESLMIRNAGESVAITTFGQVDQE 510

Required for the positioning and movement of chloroplasts. Interacts with profilin and actin independent of its polymerization status. Regulates chloroplast localization by anchoring chloroplasts to the plasma membrane and forming a bridge to the actin cytoskeleton.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	520
255566821	998	conserved hypothetical protein [Ricinus	0.998	0.520	0.782	0.0
359472709	1003	PREDICTED: protein CHUP1, chloroplastic-	0.996	0.516	0.774	0.0
449434670	987	PREDICTED: protein CHUP1, chloroplastic-	0.967	0.509	0.768	0.0
449493474	987	PREDICTED: protein CHUP1, chloroplastic-	0.967	0.509	0.768	0.0
147860149	955	hypothetical protein VITISV_020008 [Viti	0.976	0.531	0.771	0.0
297737876	969	unnamed protein product [Vitis vinifera]	0.940	0.504	0.739	0.0
356502487	964	PREDICTED: protein CHUP1, chloroplastic-	0.95	0.512	0.758	0.0
224111748	955	predicted protein [Populus trichocarpa]	0.969	0.527	0.755	0.0
297814774	1002	hypothetical protein ARALYDRAFT_484330 [	0.971	0.503	0.735	0.0
42565189	1004	protein CHUP1 [Arabidopsis thaliana] gi|	0.971	0.502	0.736	0.0

>gi|255566821|ref|XP_002524394.1| conserved hypothetical protein [Ricinus communis] gi|223536355|gb|EEF38005.1| conserved hypothetical protein [Ricinus communis]

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/519 (78%), Positives = 459/519 (88%)

Query: 1   MIVRAGFLVAASIAAYAVKQLNLKASNSSAPLTKPSGNGEARFEQQQSQGKEKQQFTCPD 60
           MI +  FLVAASIAAYAVKQLN+K   S      PS NG+   +Q++ +G++++QF   D
Sbjct: 1   MIGKFSFLVAASIAAYAVKQLNIKTERSPTSHVGPSENGQGSIDQRRGKGRDEEQFIYSD 60

Query: 61  GGLREKKREEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPIDKF 120
             L+EK  EEEEEEEEVKLISS+FDRA G+++ T+D+DI PEFEDLLSGEI+Y LP D+ 
Sbjct: 61  DILKEKDGEEEEEEEEVKLISSVFDRAHGTAAGTEDDDIYPEFEDLLSGEIDYPLPGDRV 120

Query: 121 DEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQ 180
           D+AEK+KVYE EMA+NA ELERLR+LV EL+EREVKLEGELLEYYGLKEQESD+ E+ RQ
Sbjct: 121 DKAEKDKVYENEMANNASELERLRNLVRELEEREVKLEGELLEYYGLKEQESDVAEIHRQ 180

Query: 181 LKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQT 240
           LKIKTVEIDMLNITINSLQAERKKLQE++AQ +  KKELE AR KIKELQRQIQLDANQT
Sbjct: 181 LKIKTVEIDMLNITINSLQAERKKLQEEVAQGASAKKELEAARTKIKELQRQIQLDANQT 240

Query: 241 KGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELL 300
           KGQLLLLKQQVSGLQAKEEEAIKKD ELE+KLK+VKDLEVEVVEL+RKNKELQ EKREL 
Sbjct: 241 KGQLLLLKQQVSGLQAKEEEAIKKDAELERKLKAVKDLEVEVVELRRKNKELQHEKRELT 300

Query: 301 VKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYL 360
           +KLDAA++KI SLSNMTESE VAKAR++VNNLRHAN+DLLKQVEGLQMNRF EVEELVYL
Sbjct: 301 IKLDAAQAKIVSLSNMTESEMVAKARDDVNNLRHANEDLLKQVEGLQMNRFSEVEELVYL 360

Query: 361 RWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDTDLESN 420
           RWVNACLRYELRNYQAP G+ SARDL+K+LSPKSQE+AK LMLEYAGSERGQ DTDL+SN
Sbjct: 361 RWVNACLRYELRNYQAPPGRVSARDLSKNLSPKSQEKAKHLMLEYAGSERGQGDTDLDSN 420

Query: 421 FSHPSSPGSEDFDNASIDSSTSKYSNLSKKPSLIQKLKKWGKSKDDTSALSSPARSISGC 480
           FSHPSSPGSEDFDN SIDSSTS+YS+LSKKPSLIQK+KKWGKSKDD+SALSSP+RS S  
Sbjct: 421 FSHPSSPGSEDFDNTSIDSSTSRYSSLSKKPSLIQKIKKWGKSKDDSSALSSPSRSFSAD 480

Query: 481 SPSRMSMSHRPRGPLESLMLRNTSDSVAITTFGKMDQEL 519
           SPSR SMS R RGPLE+LMLRN  DSVAITTFGK +Q++
Sbjct: 481 SPSRTSMSLRSRGPLEALMLRNVGDSVAITTFGKSEQDV 519

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472709|ref|XP_002281154.2| PREDICTED: protein CHUP1, chloroplastic-like [Vitis vinifera]

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/523 (77%), Positives = 453/523 (86%), Gaps = 5/523 (0%)

Query: 1   MIVRAGFLVAASIAAYAVKQLNLKASNSSAPLTKPSGNGEARFEQQQSQGKEKQQFTCPD 60
           MIVR GFLVAASIAAY V+Q N+K S S A L KPS NGEA  E+ Q++ + K+Q TC D
Sbjct: 1   MIVRLGFLVAASIAAYGVQQFNIKNSRSRASLGKPSENGEASSEEGQNKEERKEQLTCSD 60

Query: 61  GGLREKKREEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPIDKF 120
             L+E   EEEEE+EEVKLISS  +       + +DE+ILPEFEDLLSGEI+  LP DKF
Sbjct: 61  DYLKEVDGEEEEEKEEVKLISSEINWDLSIPPDIEDEEILPEFEDLLSGEIDIPLPSDKF 120

Query: 121 D-----EAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIV 175
           D     + EK++VYETEMA+NA ELERLR+LV EL+EREVKLEGELLEYYGLKEQE+DI 
Sbjct: 121 DTETAAKVEKDRVYETEMANNANELERLRNLVKELEEREVKLEGELLEYYGLKEQETDIA 180

Query: 176 ELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQL 235
           ELQRQLKIKTVEIDMLNITI+SLQAERKKLQ+++A     +KELEVARNKIKELQRQIQ+
Sbjct: 181 ELQRQLKIKTVEIDMLNITISSLQAERKKLQDEVALGVSARKELEVARNKIKELQRQIQV 240

Query: 236 DANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIE 295
           +ANQTKG LLLLKQQVSGLQ KE+EAIKKD E+EKKLK+ K+LEVEVVELKR+NKELQ E
Sbjct: 241 EANQTKGHLLLLKQQVSGLQTKEQEAIKKDAEIEKKLKAAKELEVEVVELKRRNKELQHE 300

Query: 296 KRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVE 355
           KRELLVKLD AE+++A+LSNMTESE VAKARE+VNNLRHAN+DLLKQVEGLQMNRF EVE
Sbjct: 301 KRELLVKLDGAEARVAALSNMTESEMVAKAREDVNNLRHANEDLLKQVEGLQMNRFSEVE 360

Query: 356 ELVYLRWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDT 415
           ELVYLRWVNACLRYELRNYQ P GK SARDL+KSLSP+SQERAKQLMLEYAGSERGQ DT
Sbjct: 361 ELVYLRWVNACLRYELRNYQTPGGKISARDLSKSLSPRSQERAKQLMLEYAGSERGQGDT 420

Query: 416 DLESNFSHPSSPGSEDFDNASIDSSTSKYSNLSKKPSLIQKLKKWGKSKDDTSALSSPAR 475
           DLESNFSHPSSPGSEDFDNASIDSSTS+YS+LSKKPSLIQKLKKWGKS+DD+S LSSPAR
Sbjct: 421 DLESNFSHPSSPGSEDFDNASIDSSTSRYSSLSKKPSLIQKLKKWGKSRDDSSVLSSPAR 480

Query: 476 SISGCSPSRMSMSHRPRGPLESLMLRNTSDSVAITTFGKMDQE 518
           S  G SP R S+S RPRGPLE+LMLRN  D VAITTFGK+DQE
Sbjct: 481 SFGGGSPGRTSISLRPRGPLEALMLRNAGDGVAITTFGKIDQE 523

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434670|ref|XP_004135119.1| PREDICTED: protein CHUP1, chloroplastic-like [Cucumis sativus]

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/519 (76%), Positives = 449/519 (86%), Gaps = 16/519 (3%)

Query: 1   MIVRAGFLVAASIAAYAVKQLNLKASNSSAPLTKPSGNGEARFEQQQSQGKEKQQFTCPD 60
           M++R G +VAASIAAYAV+QLN+K SNS A + K + NGE + E + S    K  +    
Sbjct: 1   MVLRLGLVVAASIAAYAVRQLNVKNSNSVASVNKRTENGEEKEEVKHSNNDFKDDYGE-- 58

Query: 61  GGLREKKREEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPIDKF 120
                     EEEEEEVKLISS+FD+       T+D+DILPEFE+LLSGEIE+ LP    
Sbjct: 59  ----------EEEEEEVKLISSVFDQV--PVYITEDDDILPEFENLLSGEIEFPLPEIDD 106

Query: 121 DEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQ 180
            +AEK++VYETEMA+NA ELERLR+LV EL+EREVKLEGELLEYYGLKEQESDI ELQRQ
Sbjct: 107 SKAEKDRVYETEMANNASELERLRNLVKELEEREVKLEGELLEYYGLKEQESDITELQRQ 166

Query: 181 LKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQT 240
           LKIK VEIDMLNITI+SLQAERKKLQE+IAQ + VKKELE ARNKIKELQRQIQLDANQT
Sbjct: 167 LKIKAVEIDMLNITISSLQAERKKLQEEIAQDAAVKKELEFARNKIKELQRQIQLDANQT 226

Query: 241 KGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELL 300
           KGQLLLLKQQVSGLQ+KE+E IKKD ELEKKLK+VK+LEVEV+ELKRKNKELQIEKREL 
Sbjct: 227 KGQLLLLKQQVSGLQSKEQETIKKDAELEKKLKAVKELEVEVMELKRKNKELQIEKRELT 286

Query: 301 VKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYL 360
           +KLDAAE+KI++LSNMTESE VA+ RE+V+NLRHAN+DL+KQVEGLQMNRF EVEELVYL
Sbjct: 287 IKLDAAENKISTLSNMTESELVAQTREQVSNLRHANEDLIKQVEGLQMNRFSEVEELVYL 346

Query: 361 RWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDTDLESN 420
           RWVNACLRYELRNYQAP GK SARDL+K+LSPKSQE+AKQLM+EYAGSERGQ DTDLESN
Sbjct: 347 RWVNACLRYELRNYQAPTGKISARDLSKNLSPKSQEKAKQLMVEYAGSERGQGDTDLESN 406

Query: 421 FSHPSSPGSEDFDNASIDSSTSKYSNLSKKPSLIQKLKKW-GKSKDDTSALSSPARSISG 479
           +S PSSPGSEDFDNASIDSS S+YS+LSKKPSLIQKLKKW G+SKDD+SALSSPARS SG
Sbjct: 407 YSQPSSPGSEDFDNASIDSSFSRYSSLSKKPSLIQKLKKWGGRSKDDSSALSSPARSFSG 466

Query: 480 CSPSRMSMSHRPRGPLESLMLRNTSDSVAITTFGKMDQE 518
            SP RMSMS +PRGPLESLMLRN SDSVAITTFG M+QE
Sbjct: 467 GSP-RMSMSQKPRGPLESLMLRNASDSVAITTFGTMEQE 504

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493474|ref|XP_004159306.1| PREDICTED: protein CHUP1, chloroplastic-like [Cucumis sativus]

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/519 (76%), Positives = 449/519 (86%), Gaps = 16/519 (3%)

Query: 1   MIVRAGFLVAASIAAYAVKQLNLKASNSSAPLTKPSGNGEARFEQQQSQGKEKQQFTCPD 60
           M++R G +VAASIAAYAV+QLN+K SNS A + K + NGE + E + S    K  +    
Sbjct: 1   MVLRLGLVVAASIAAYAVRQLNVKNSNSVASVNKRTENGEEKEEVKHSNNDFKDDYGE-- 58

Query: 61  GGLREKKREEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPIDKF 120
                     EEEEEEVKLISS+FD+       T+D+DILPEFE+LLSGEIE+ LP    
Sbjct: 59  ----------EEEEEEVKLISSVFDQV--PVYITEDDDILPEFENLLSGEIEFPLPEIDD 106

Query: 121 DEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQ 180
            +AEK++VYETEMA+NA ELERLR+LV EL+EREVKLEGELLEYYGLKEQESDI ELQRQ
Sbjct: 107 SKAEKDRVYETEMANNASELERLRNLVKELEEREVKLEGELLEYYGLKEQESDITELQRQ 166

Query: 181 LKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQT 240
           LKIK VEIDMLNITI+SLQAERKKLQE+IAQ + VKKELE ARNKIKELQRQIQLDANQT
Sbjct: 167 LKIKAVEIDMLNITISSLQAERKKLQEEIAQDAAVKKELEFARNKIKELQRQIQLDANQT 226

Query: 241 KGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELL 300
           KGQLLLLKQQVSGLQ+KE+E IKKD ELEKKLK+VK+LEVEV+ELKRKNKELQIEKREL 
Sbjct: 227 KGQLLLLKQQVSGLQSKEQETIKKDAELEKKLKAVKELEVEVMELKRKNKELQIEKRELT 286

Query: 301 VKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYL 360
           +KLDAAE+KI++LSNMTESE VA+ RE+V+NLRHAN+DL+KQVEGLQMNRF EVEELVYL
Sbjct: 287 IKLDAAENKISTLSNMTESELVAQTREQVSNLRHANEDLIKQVEGLQMNRFSEVEELVYL 346

Query: 361 RWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDTDLESN 420
           RWVNACLRYELRNYQAP GK SARDL+K+LSPKSQE+AKQLM+EYAGSERGQ DTDLESN
Sbjct: 347 RWVNACLRYELRNYQAPTGKISARDLSKNLSPKSQEKAKQLMVEYAGSERGQGDTDLESN 406

Query: 421 FSHPSSPGSEDFDNASIDSSTSKYSNLSKKPSLIQKLKKW-GKSKDDTSALSSPARSISG 479
           +S PSSPGSEDFDNASIDSS S+YS+LSKKPSLIQKLKKW G+SKDD+SALSSPARS SG
Sbjct: 407 YSQPSSPGSEDFDNASIDSSFSRYSSLSKKPSLIQKLKKWGGRSKDDSSALSSPARSFSG 466

Query: 480 CSPSRMSMSHRPRGPLESLMLRNTSDSVAITTFGKMDQE 518
            SP RMSMS +PRGPLESLMLRN SDSVAITTFG M+QE
Sbjct: 467 GSP-RMSMSQKPRGPLESLMLRNASDSVAITTFGTMEQE 504

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860149|emb|CAN78725.1| hypothetical protein VITISV_020008 [Vitis vinifera]

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/513 (77%), Positives = 444/513 (86%), Gaps = 5/513 (0%)

Query: 11  ASIAAYAVKQLNLKASNSSAPLTKPSGNGEARFEQQQSQGKEKQQFTCPDGGLREKKREE 70
           ASIAAY V+Q N+K S S A L KPS NGEA  E+ Q++ + K+Q TC D  L+E   EE
Sbjct: 35  ASIAAYGVQQFNIKNSRSRASLGKPSENGEASSEEGQNKEERKEQLTCSDDYLKEVDGEE 94

Query: 71  EEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPIDKFD-----EAEK 125
           EEE+EEVKLISS  +       + +DE+ILPEFEDLLSGEI+  LP DKFD     + EK
Sbjct: 95  EEEKEEVKLISSEINWDLSIPPDIEDEEILPEFEDLLSGEIDIPLPSDKFDTETAAKVEK 154

Query: 126 NKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKT 185
           ++VYETEMA+NA ELERLR+LV EL+EREVKLEGELLEYYGLKEQE+DI ELQRQLKIKT
Sbjct: 155 DRVYETEMANNANELERLRNLVKELEEREVKLEGELLEYYGLKEQETDIAELQRQLKIKT 214

Query: 186 VEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLL 245
           VEIDMLNITI+SLQAERKKLQ+++A     +KELEVARNKIKELQRQIQ++ANQTKG LL
Sbjct: 215 VEIDMLNITISSLQAERKKLQDEVALGVSARKELEVARNKIKELQRQIQVEANQTKGHLL 274

Query: 246 LLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDA 305
           LLKQQVSGLQ KE+EAIKKD E+EKKLK+ K+LEVEVVELKR+NKELQ EKRELLVKLD 
Sbjct: 275 LLKQQVSGLQTKEQEAIKKDAEIEKKLKAAKELEVEVVELKRRNKELQHEKRELLVKLDG 334

Query: 306 AESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVNA 365
           AE+++A+LSNMTESE VAKARE+VNNLRHAN+DLLKQVEGLQMNRF EVEELVYLRWVNA
Sbjct: 335 AEARVAALSNMTESEMVAKAREDVNNLRHANEDLLKQVEGLQMNRFSEVEELVYLRWVNA 394

Query: 366 CLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDTDLESNFSHPS 425
           CLRYELRNYQ P GK SARDL+KSLSP+SQERAKQLMLEYAGSERGQ DTDLESNFSHPS
Sbjct: 395 CLRYELRNYQTPGGKISARDLSKSLSPRSQERAKQLMLEYAGSERGQGDTDLESNFSHPS 454

Query: 426 SPGSEDFDNASIDSSTSKYSNLSKKPSLIQKLKKWGKSKDDTSALSSPARSISGCSPSRM 485
           SPGSEDFDNASIDSSTS+YS+LSKKPSLIQKLKKWGKS+DD+S LSSPARS  G SP R 
Sbjct: 455 SPGSEDFDNASIDSSTSRYSSLSKKPSLIQKLKKWGKSRDDSSVLSSPARSFGGGSPGRT 514

Query: 486 SMSHRPRGPLESLMLRNTSDSVAITTFGKMDQE 518
           S+S RPRGPLE+LMLRN  D VAITTFGK+DQE
Sbjct: 515 SISLRPRGPLEALMLRNAGDGVAITTFGKIDQE 547

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737876|emb|CBI27077.3| unnamed protein product [Vitis vinifera]

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/518 (73%), Positives = 425/518 (82%), Gaps = 29/518 (5%)

Query: 1   MIVRAGFLVAASIAAYAVKQLNLKASNSSAPLTKPSGNGEARFEQQQSQGKEKQQFTCPD 60
           MIVR GFLVAASIAAY V+Q N+K S S A L KPS NGEA  E+ Q++ + K+Q TC D
Sbjct: 1   MIVRLGFLVAASIAAYGVQQFNIKNSRSRASLGKPSENGEASSEEGQNKEERKEQLTCSD 60

Query: 61  GGLREKKREEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPIDKF 120
             L+E   EEEEE+EEVKLISS  +       + +DE+ILPEFEDLLSGEI+  LP DKF
Sbjct: 61  DYLKEVDGEEEEEKEEVKLISSEINWDLSIPPDIEDEEILPEFEDLLSGEIDIPLPSDKF 120

Query: 121 DEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQ 180
           D         TE A                     KLEGELLEYYGLKEQE+DI ELQRQ
Sbjct: 121 D---------TETA--------------------AKLEGELLEYYGLKEQETDIAELQRQ 151

Query: 181 LKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQT 240
           LKIKTVEIDMLNITI+SLQAERKKLQ+++A     +KELEVARNKIKELQRQIQ++ANQT
Sbjct: 152 LKIKTVEIDMLNITISSLQAERKKLQDEVALGVSARKELEVARNKIKELQRQIQVEANQT 211

Query: 241 KGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELL 300
           KG LLLLKQQVSGLQ KE+EAIKKD E+EKKLK+ K+LEVEVVELKR+NKELQ EKRELL
Sbjct: 212 KGHLLLLKQQVSGLQTKEQEAIKKDAEIEKKLKAAKELEVEVVELKRRNKELQHEKRELL 271

Query: 301 VKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYL 360
           VKLD AE+++A+LSNMTESE VAKARE+VNNLRHAN+DLLKQVEGLQMNRF EVEELVYL
Sbjct: 272 VKLDGAEARVAALSNMTESEMVAKAREDVNNLRHANEDLLKQVEGLQMNRFSEVEELVYL 331

Query: 361 RWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDTDLESN 420
           RWVNACLRYELRNYQ P GK SARDL+KSLSP+SQERAKQLMLEYAGSERGQ DTDLESN
Sbjct: 332 RWVNACLRYELRNYQTPGGKISARDLSKSLSPRSQERAKQLMLEYAGSERGQGDTDLESN 391

Query: 421 FSHPSSPGSEDFDNASIDSSTSKYSNLSKKPSLIQKLKKWGKSKDDTSALSSPARSISGC 480
           FSHPSSPGSEDFDNASIDSSTS+YS+LSKKPSLIQKLKKWGKS+DD+S LSSPARS  G 
Sbjct: 392 FSHPSSPGSEDFDNASIDSSTSRYSSLSKKPSLIQKLKKWGKSRDDSSVLSSPARSFGGG 451

Query: 481 SPSRMSMSHRPRGPLESLMLRNTSDSVAITTFGKMDQE 518
           SP R S+S RPRGPLE+LMLRN  D VAITTFGK+DQE
Sbjct: 452 SPGRTSISLRPRGPLEALMLRNAGDGVAITTFGKIDQE 489

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502487|ref|XP_003520050.1| PREDICTED: protein CHUP1, chloroplastic-like [Glycine max]

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/518 (75%), Positives = 436/518 (84%), Gaps = 24/518 (4%)

Query: 1   MIVRAGFLVAASIAAYAVKQLNLKASNSSAPLTKPSGNGEARFEQQQSQGKEKQQFTCPD 60
           MIVR G +VAAS+AA+ VKQLN+K+S       KP         + + +G E++  T   
Sbjct: 1   MIVRLGLIVAASLAAFTVKQLNVKSS-------KP---------EHKDEGSEEEHVTRVT 44

Query: 61  GGLREKKREEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPIDKF 120
             L+E + EEEEE+EEVKLISSI +RA     N  ++DILPEFEDLLSGEIE+ +P DK 
Sbjct: 45  DLLQENEGEEEEEKEEVKLISSIINRA-----NDFEDDILPEFEDLLSGEIEFPIPPDK- 98

Query: 121 DEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQ 180
              EK+KVYE EMA NA ELERLR LV EL+EREVKLEGELLEYYGLKEQESDIVELQRQ
Sbjct: 99  --DEKDKVYEIEMAHNATELERLRQLVKELEEREVKLEGELLEYYGLKEQESDIVELQRQ 156

Query: 181 LKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQT 240
           LKIKTVEIDMLNITINSLQAERKKLQE++ Q +  K+ELEVARNKIKELQRQIQL+ANQT
Sbjct: 157 LKIKTVEIDMLNITINSLQAERKKLQEELTQGASAKRELEVARNKIKELQRQIQLEANQT 216

Query: 241 KGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELL 300
           KGQLLLLKQQVS L  KEEEA +KD E++KKLK+V DLEV VVELKRKNKELQ EKREL+
Sbjct: 217 KGQLLLLKQQVSTLLVKEEEAARKDAEVQKKLKAVNDLEVTVVELKRKNKELQHEKRELM 276

Query: 301 VKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYL 360
           VKL+AAES+ A LSNMTESE VAKA+EEV+NLRHAN+DLLKQVEGLQMNRF EVEELVYL
Sbjct: 277 VKLNAAESRAAELSNMTESEMVAKAKEEVSNLRHANEDLLKQVEGLQMNRFSEVEELVYL 336

Query: 361 RWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDTDLESN 420
           RWVNACLRYELRN Q P GK SARDL+KSLSPKSQE+AKQLMLEYAGSERGQ DTDLESN
Sbjct: 337 RWVNACLRYELRNNQTPQGKVSARDLSKSLSPKSQEKAKQLMLEYAGSERGQGDTDLESN 396

Query: 421 FSHPSSPGSEDFDNASIDSSTSKYSNLSKKPSLIQKLKKWGKSKDDTSALSSPARSISGC 480
           FSHPSSPGSEDFDNASIDSSTSKYS+LSKK SLIQK KKWGKSKDD+SALSSPARS SG 
Sbjct: 397 FSHPSSPGSEDFDNASIDSSTSKYSSLSKKTSLIQKFKKWGKSKDDSSALSSPARSFSGG 456

Query: 481 SPSRMSMSHRPRGPLESLMLRNTSDSVAITTFGKMDQE 518
           SP RMS+S + RGPLESLMLRN  DSV+IT+FG  DQE
Sbjct: 457 SPRRMSVSVKQRGPLESLMLRNAGDSVSITSFGLRDQE 494

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111748|ref|XP_002315963.1| predicted protein [Populus trichocarpa] gi|222865003|gb|EEF02134.1| predicted protein [Populus trichocarpa]

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/520 (75%), Positives = 452/520 (86%), Gaps = 16/520 (3%)

Query: 1   MIVRAGFLVAASIAAYAVKQLNLKASNSSAPLTKPSGNGEARFEQQQSQGKEKQQFTCPD 60
           MIVR GFLVAASIAA+A KQL++K + S+    K SG+             +++QFT  D
Sbjct: 1   MIVRLGFLVAASIAAFAAKQLHVKTAKSTDSSAKRSGD-------------DREQFTYFD 47

Query: 61  GGLREK--KREEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPID 118
             ++EK    EEEEEEEEVKLI+SIF+ A+G+    +DEDILPEFEDLLSGEI+Y LP +
Sbjct: 48  DSIKEKDVSVEEEEEEEEVKLINSIFNHAQGTPPGMEDEDILPEFEDLLSGEIDYPLPGE 107

Query: 119 KFDEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQ 178
           KFD+AEK+K+YETEMA+NA ELE LR+LV EL+EREVKLEGELLEYYGLKEQESD+VELQ
Sbjct: 108 KFDQAEKDKIYETEMANNASELECLRNLVRELEEREVKLEGELLEYYGLKEQESDVVELQ 167

Query: 179 RQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDAN 238
           RQLKIKTVEIDMLNITINSLQAERKKLQE+I+  +  KKELE+ARNKIKE QRQIQLDAN
Sbjct: 168 RQLKIKTVEIDMLNITINSLQAERKKLQEEISHGASSKKELELARNKIKEFQRQIQLDAN 227

Query: 239 QTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRE 298
           QTKGQLLLLKQQVSGLQAKE+EA+KKD E+EK+LK+VK+LEVEVVELKRKNKELQ EKRE
Sbjct: 228 QTKGQLLLLKQQVSGLQAKEQEAVKKDAEVEKRLKAVKELEVEVVELKRKNKELQHEKRE 287

Query: 299 LLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELV 358
           L++KL AAE+K+ SLSN++E+E VAK REEVNNL+HAN+DLLKQVEGLQMNRF EVEELV
Sbjct: 288 LIIKLGAAEAKLTSLSNLSETEMVAKVREEVNNLKHANEDLLKQVEGLQMNRFSEVEELV 347

Query: 359 YLRWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDTDLE 418
           YLRWVNACLRYELRNYQ P+GK SARDLNKSLSPKSQERAKQL+LEYAGSERGQ DTD+E
Sbjct: 348 YLRWVNACLRYELRNYQTPSGKVSARDLNKSLSPKSQERAKQLLLEYAGSERGQGDTDME 407

Query: 419 SNFSHPSSPGSEDFDNASIDSSTSKYSNLSKKPSLIQKLKKWGKSKDDTSALSSPARSIS 478
           SN+SHPSSPGSEDFDN +   S+S   + SKKP+LIQKLKKWG+SKDD+SA SSP+RS S
Sbjct: 408 SNYSHPSSPGSEDFDN-TSIDSSSSRYSFSKKPNLIQKLKKWGRSKDDSSAFSSPSRSFS 466

Query: 479 GCSPSRMSMSHRPRGPLESLMLRNTSDSVAITTFGKMDQE 518
           G SPSR SMSHRPRGPLESLM+RN SD+VAIT+FGKMDQ+
Sbjct: 467 GVSPSRSSMSHRPRGPLESLMIRNASDTVAITSFGKMDQD 506

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814774|ref|XP_002875270.1| hypothetical protein ARALYDRAFT_484330 [Arabidopsis lyrata subsp. lyrata] gi|297321108|gb|EFH51529.1| hypothetical protein ARALYDRAFT_484330 [Arabidopsis lyrata subsp. lyrata]

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/522 (73%), Positives = 442/522 (84%), Gaps = 17/522 (3%)

Query: 1   MIVRAGFLVAASIAAYAVKQLNLKASNSSAPLTKPSGNGEARFEQQQSQGKEKQQFTCPD 60
           M VR GF+VAASIAA  VK+LN+K S  S    KPS NGE         G +K+Q   PD
Sbjct: 1   MFVRIGFVVAASIAAVTVKRLNVKPSKPS----KPSDNGE---------GGDKEQSVDPD 47

Query: 61  GGLREKK-REEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPID- 118
             L +K  +EEEEEEEEVKLI+S+ ++ RGS S+  D+DILPEFEDLLSGEIEY LP D 
Sbjct: 48  NNLNDKNVQEEEEEEEEVKLINSVINQTRGSFSDYLDDDILPEFEDLLSGEIEYPLPGDD 107

Query: 119 -KFDEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVEL 177
              ++AEK + YE E+A N  ELERL+ LV EL+EREVKLEGELLEYYGLKEQESDIVEL
Sbjct: 108 NNLEKAEKERKYEVEIAYNDGELERLKQLVKELEEREVKLEGELLEYYGLKEQESDIVEL 167

Query: 178 QRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDA 237
           QRQLKIKTVEIDMLNITINSLQAERKKLQE+++Q+  V+KELEVARNKIKELQRQIQLDA
Sbjct: 168 QRQLKIKTVEIDMLNITINSLQAERKKLQEELSQNGIVRKELEVARNKIKELQRQIQLDA 227

Query: 238 NQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKR 297
           NQTKGQLLLLKQ VS LQ KEEEA+ KD E+E+KLK+V+DLEVEV+ELKRKN+ELQ EKR
Sbjct: 228 NQTKGQLLLLKQHVSSLQMKEEEAMNKDTEVERKLKAVQDLEVEVMELKRKNRELQHEKR 287

Query: 298 ELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEEL 357
           EL +KLD+AE++IA+LSNMTES+KVAK REEVNNL+H N+DLLKQVEGLQMNRF EVEEL
Sbjct: 288 ELSIKLDSAEARIATLSNMTESDKVAKVREEVNNLKHNNEDLLKQVEGLQMNRFSEVEEL 347

Query: 358 VYLRWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDTDL 417
           VYLRWVNACLRYELRNYQ PAGK SARDL+K+LSPKSQ +AK+LMLEYAGSERGQ DTDL
Sbjct: 348 VYLRWVNACLRYELRNYQTPAGKISARDLSKNLSPKSQAKAKRLMLEYAGSERGQGDTDL 407

Query: 418 ESNFSHPSSPGSEDFDNASIDSSTSKYSNLSKKPSLIQKLKKWGKSKDDTSALSSPARSI 477
           ESN+S PSSPGS+DFDNAS+DSSTS+ S+ SKKP LIQKLK+WGKSKDD+S  SSP+RS 
Sbjct: 408 ESNYSQPSSPGSDDFDNASMDSSTSRLSSFSKKPGLIQKLKRWGKSKDDSSVQSSPSRSF 467

Query: 478 SGCSPSRMSMS-HRPRGPLESLMLRNTSDSVAITTFGKMDQE 518
            G SP R+S S ++ RGPLESLM+RN  +SVAITTFG++DQE
Sbjct: 468 YGGSPGRLSSSMNKQRGPLESLMIRNAGESVAITTFGQVDQE 509

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565189|ref|NP_189197.2| protein CHUP1 [Arabidopsis thaliana] gi|334185625|ref|NP_001189974.1| protein CHUP1 [Arabidopsis thaliana] gi|75273319|sp|Q9LI74.1|CHUP1_ARATH RecName: Full=Protein CHUP1, chloroplastic; AltName: Full=Protein CHLOROPLAST UNUSUAL POSITIONING 1 gi|11994760|dbj|BAB03089.1| unnamed protein product [Arabidopsis thaliana] gi|28071265|dbj|BAC55960.1| actin binding protein [Arabidopsis thaliana] gi|332643530|gb|AEE77051.1| protein CHUP1 [Arabidopsis thaliana] gi|332643531|gb|AEE77052.1| protein CHUP1 [Arabidopsis thaliana]

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/523 (73%), Positives = 443/523 (84%), Gaps = 18/523 (3%)

Query: 1   MIVRAGFLVAASIAAYAVKQLNLKASNSSAPLTKPSGNGEARFEQQQSQGKEKQQFTCPD 60
           M VR GF+VAASIAA  VK+LN+K S  S    KPS NGE         G +K+Q   PD
Sbjct: 1   MFVRIGFVVAASIAAVTVKRLNVKPSKPS----KPSDNGE---------GGDKEQSVDPD 47

Query: 61  GGLREK--KREEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPID 118
             L +K  + EEEEEEEEVKLI+S+ ++ RGS S+  D+DILPEFEDLLSGEIEY LP D
Sbjct: 48  YNLNDKNLQEEEEEEEEEVKLINSVINQTRGSFSDYLDDDILPEFEDLLSGEIEYPLPDD 107

Query: 119 --KFDEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVE 176
               ++AEK + YE EMA N  ELERL+ LV EL+EREVKLEGELLEYYGLKEQESDIVE
Sbjct: 108 DNNLEKAEKERKYEVEMAYNDGELERLKQLVKELEEREVKLEGELLEYYGLKEQESDIVE 167

Query: 177 LQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLD 236
           LQRQLKIKTVEIDMLNITINSLQAERKKLQE+++Q+  V+KELEVARNKIKELQRQIQLD
Sbjct: 168 LQRQLKIKTVEIDMLNITINSLQAERKKLQEELSQNGIVRKELEVARNKIKELQRQIQLD 227

Query: 237 ANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEK 296
           ANQTKGQLLLLKQ VS LQ KEEEA+ KD E+E+KLK+V+DLEV+V+ELKRKN+ELQ EK
Sbjct: 228 ANQTKGQLLLLKQHVSSLQMKEEEAMNKDTEVERKLKAVQDLEVQVMELKRKNRELQHEK 287

Query: 297 RELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEE 356
           REL +KLD+AE++IA+LSNMTES+KVAK REEVNNL+H N+DLLKQVEGLQMNRF EVEE
Sbjct: 288 RELSIKLDSAEARIATLSNMTESDKVAKVREEVNNLKHNNEDLLKQVEGLQMNRFSEVEE 347

Query: 357 LVYLRWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDTD 416
           LVYLRWVNACLRYELRNYQ PAGK SARDL+K+LSPKSQ +AK+LMLEYAGSERGQ DTD
Sbjct: 348 LVYLRWVNACLRYELRNYQTPAGKISARDLSKNLSPKSQAKAKRLMLEYAGSERGQGDTD 407

Query: 417 LESNFSHPSSPGSEDFDNASIDSSTSKYSNLSKKPSLIQKLKKWGKSKDDTSALSSPARS 476
           LESN+S PSSPGS+DFDNAS+DSSTS++S+ SKKP LIQKLKKWGKSKDD+S  SSP+RS
Sbjct: 408 LESNYSQPSSPGSDDFDNASMDSSTSRFSSFSKKPGLIQKLKKWGKSKDDSSVQSSPSRS 467

Query: 477 ISGCSPSRMSMS-HRPRGPLESLMLRNTSDSVAITTFGKMDQE 518
             G SP R+S S ++ RGPLESLM+RN  +SVAITTFG++DQE
Sbjct: 468 FYGGSPGRLSSSMNKQRGPLESLMIRNAGESVAITTFGQVDQE 510

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	520
TAIR|locus:2102385	1004	CHUP1 "CHLOROPLAST UNUSUAL POS	0.975	0.504	0.583	3.5e-139
TAIR|locus:2034091	573	AR791 "AT1G52080" [Arabidopsis	0.590	0.535	0.337	1.8e-39

TAIR|locus:2102385 CHUP1 "CHLOROPLAST UNUSUAL POSITIONING 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1362 (484.5 bits), Expect = 3.5e-139, P = 3.5e-139
 Identities = 304/521 (58%), Positives = 347/521 (66%)

Query:     1 MIVRAGFLVAASIAAYAVKQLNLKASNSSAPLTKPSGNGEARFXXXXXXXXXXXXFTCPD 60
             M VR GF+VAASIAA  VK+LN+K S  S    KPS NGE               +   D
Sbjct:     1 MFVRIGFVVAASIAAVTVKRLNVKPSKPS----KPSDNGEG----GDKEQSVDPDYNLND 52

Query:    61 GGLXXXXXXXXXXXXXVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPID-- 118
               L             VKLI+S+ ++ RGS S+  D+DILPEFEDLLSGEIEY LP D  
Sbjct:    53 KNLQEEEEEEEEE---VKLINSVINQTRGSFSDYLDDDILPEFEDLLSGEIEYPLPDDDN 109

Query:   119 KFDEAEKNKVYETEMADNAXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXQESDIVELQ 178
               ++AEK + YE EMA N                  V              QESDIVELQ
Sbjct:   110 NLEKAEKERKYEVEMAYNDGELERLKQLVKELEEREVKLEGELLEYYGLKEQESDIVELQ 169

Query:   179 RQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDAN 238
             RQLKIKTVEIDMLNITINSLQAERKKLQE+++Q+  V+KELEVARNKIKELQRQIQLDAN
Sbjct:   170 RQLKIKTVEIDMLNITINSLQAERKKLQEELSQNGIVRKELEVARNKIKELQRQIQLDAN 229

Query:   239 XXXXXXXXXXXXXXXXXAKEEEAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIEKRE 298
                               KEEEA+                              Q EKRE
Sbjct:   230 QTKGQLLLLKQHVSSLQMKEEEAMNKDTEVERKLKAVQDLEVQVMELKRKNRELQHEKRE 289

Query:   299 LLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELV 358
             L +KLD+AE++IA+LSNMTES+KVAK REEVNNL+H N+DLLKQVEGLQMNRF EVEELV
Sbjct:   290 LSIKLDSAEARIATLSNMTESDKVAKVREEVNNLKHNNEDLLKQVEGLQMNRFSEVEELV 349

Query:   359 YLRWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSERGQVDTDLE 418
             YLRWVNACLRYELRNYQ PAGK SARDL+K+LSPKSQ +AK+LMLEYAGSERGQ DTDLE
Sbjct:   350 YLRWVNACLRYELRNYQTPAGKISARDLSKNLSPKSQAKAKRLMLEYAGSERGQGDTDLE 409

Query:   419 SNFSHPSSPGSEDFDNASIDSSTSKYSNLSKKPSLIQKLKKWGKSKDDTSALSSPARSI- 477
             SN+S PSSPGS+DFDNAS+DSSTS++S+ SKKP LIQKLKKWGKSKDD+S  SSP+RS  
Sbjct:   410 SNYSQPSSPGSDDFDNASMDSSTSRFSSFSKKPGLIQKLKKWGKSKDDSSVQSSPSRSFY 469

Query:   478 SGCXXXXXXXXXXXXGPLESLMLRNTSDSVAITTFGKMDQE 518
              G             GPLESLM+RN  +SVAITTFG++DQE
Sbjct:   470 GGSPGRLSSSMNKQRGPLESLMIRNAGESVAITTFGQVDQE 510

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0009707 "chloroplast outer membrane" evidence=IDA

GO:0009902 "chloroplast relocation" evidence=RCA;IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2034091 AR791 "AT1G52080" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 107/317 (33%), Positives = 169/317 (53%)

Query:   170 QESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKEL 229
             Q+   +EL+ +LK+  +E  + N  I  LQAE +KL+ +  + S V  EL++A+++++ L
Sbjct:   171 QQKIAMELRSRLKLNQMETKVFNFKIKKLQAENEKLKAECFEHSKVLLELDMAKSQVQVL 230

Query:   230 QRQIQLDANXXXXXXXXXXXXXXXXXAKEEEAIXXXXXXXXXXXXXXXXXXXXXXXXXXX 289
             ++++ ++                    +E +A+                           
Sbjct:   231 KKKLNINTQQHVAQILSLKQRVARLQEEEIKAVLPDLEADKMMQRLRDLESEINELTDTN 290

Query:   290 XXXQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMN 349
                Q E  EL  KL++ +  I + S + E E++   RE+ N LR  N++L K VE LQ +
Sbjct:   291 TRLQFENFELSEKLESVQ--IIANSKLEEPEEIETLREDCNRLRSENEELKKDVEQLQGD 348

Query:   350 RFGEVEELVYLRWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSE 409
             R  ++E+LVYLRW+NACLRYELR YQ PAGKT ARDL+ +LSP S+E+AKQL+LEYA SE
Sbjct:   349 RCTDLEQLVYLRWINACLRYELRTYQPPAGKTVARDLSTTLSPTSEEKAKQLILEYAHSE 408

Query:   410 RGQVDTDLESNFSHPSSPGSEDF--DNASIDSSTSKYSNLSKKPSLIQKLKK--WGKSKD 465
                 D D  S+    SS  ++    D++S+D+  +  +  + K  L+ KL K   GK   
Sbjct:   409 -DNTDYDRWSSSQEESSMITDSMFLDDSSVDTLFATKTKKTGKKKLMHKLMKILHGKDTK 467

Query:   466 DT---SALSSPARSISG 479
             D+   +  S P+ S +G
Sbjct:   468 DSKKRAGSSEPSSSNTG 484


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.126   0.332    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      520       405    0.0010  117 3  10 23  0.50    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  301 KB (2156 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  58.20u 0.16s 58.36t   Elapsed:  00:00:03
  Total cpu time:  58.20u 0.16s 58.36t   Elapsed:  00:00:03
  Start:  Fri May 10 21:04:50 2013   End:  Fri May 10 21:04:53 2013

GO:0003779 "actin binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LI74	CHUP1_ARATH	No assigned EC number	0.7361	0.9711	0.5029	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00030273001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (959 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00002921001	SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (825 aa)				•			•		0.413

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	520
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	1e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
COG1293	564	COG1293, COG1293, Predicted RNA-binding protein ho	3e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
pfam05622	713	pfam05622, HOOK, HOOK protein	6e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	7e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	0.002
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.002
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.003
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.003
PLN02939	977	PLN02939, PLN02939, transferase, transferring glyc	0.003
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.004
COG5022	1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	0.004
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 71/268 (26%), Positives = 133/268 (49%), Gaps = 12/268 (4%)

Query: 67  KREEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPIDKFDEAEKN 126
           KRE +E EEE+  + +  ++      +  +E  L   EDLL  E+  QL   +    E  
Sbjct: 666 KRELKELEEELAELEAQLEKLEEELKSLKNE--LRSLEDLLE-ELRRQLEELERQLEELK 722

Query: 127 KVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYG-LKEQESDIVELQRQLKIKT 185
           +           ELE+L+S + EL+E   +LE EL E    L+E E ++  L+  L    
Sbjct: 723 RELAAL----EEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLK 778

Query: 186 VEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLL 245
            EI+ L     +LQ E ++L+E++ ++      LE     +++ + +++ +  + + ++ 
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE 838

Query: 246 LLKQQVSGLQAKEEEAIKKDVELEKKL----KSVKDLEVEVVELKRKNKELQIEKRELLV 301
            L++++  L+ + EE  K+  EL+++L       ++LE E+ EL+ + +EL+ E REL  
Sbjct: 839 ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELES 898

Query: 302 KLDAAESKIASLSNMTESEKVAKAREEV 329
           +L   + +I  L    E  +    R EV
Sbjct: 899 ELAELKEEIEKLRERLEELEAKLERLEV 926

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.1 bits (133), Expect = 8e-08
 Identities = 54/255 (21%), Positives = 100/255 (39%), Gaps = 15/255 (5%)

Query: 40  EARFEQQQSQGKEKQQFTCPDGGLREKKREEEEE--EEEVKLISSIFDRARGSSSNTDDE 97
           E   E+     KE  +       L E+  E EEE  E E ++        +         
Sbjct: 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802

Query: 98  DILPEFEDLLSGEIEYQLPIDKFDEAEKNKVYETEMADNARELERLRSLVLELQEREVKL 157
           + L E    L+      L  +  +  E+ +  E  +A   R LE L   + EL E    L
Sbjct: 803 EALDELRAELT-----LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857

Query: 158 EGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKK 217
             E+      +E E  I EL+ +L+    E   L   +  L++E ++L E++ +    + 
Sbjct: 858 AAEI------EELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911

Query: 218 ELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKD 277
           EL     +++E   Q++L     + ++  L++++S   +   E  +      K     ++
Sbjct: 912 ELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALE--NKIEDDEEE 969

Query: 278 LEVEVVELKRKNKEL 292
               +  L+ K KEL
Sbjct: 970 ARRRLKRLENKIKEL 984

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 44/223 (19%), Positives = 98/223 (43%), Gaps = 14/223 (6%)

Query: 139 ELERLRSLVLELQEREVKLEGELLEYY-GLKEQESDIVELQRQLKIKTVEIDMLNITINS 197
            L  LR  + EL+E   +L  EL E    +     D+  L+ +++     I  L+  +  
Sbjct: 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758

Query: 198 LQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAK 257
           L+AE ++L+E++ ++     E E    +++    Q++ +    +  L  L+ +++ L  +
Sbjct: 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818

Query: 258 EEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQI----EKRELLVKLDAAESKIASL 313
                ++   LE+++ + +    ++ E   +  E       E  EL   ++  ES++ +L
Sbjct: 819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL 878

Query: 314 SNMTESEKVA---------KAREEVNNLRHANDDLLKQVEGLQ 347
            N   S + A         +  EE+  L     +L +++E L+
Sbjct: 879 LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELR 921

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 60/256 (23%), Positives = 118/256 (46%), Gaps = 9/256 (3%)

Query: 122 EAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQL 181
           E +  K    +          L  L+ +L+E   +LE EL E     E+E +  ELQ +L
Sbjct: 206 ERQAEKAERYQELKAELRELELALLLAKLKELRKELE-ELEEELSRLEEELE--ELQEEL 262

Query: 182 KIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTK 241
           +    EI+ L   +  L+ E ++LQE++ +     +ELE   + ++E   +++ +  + +
Sbjct: 263 EEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELE 322

Query: 242 GQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLV 301
            +L  LK+++  L+ + EE      ELE+ L  +++ + E+ E      E   E  E L 
Sbjct: 323 ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALR 382

Query: 302 -KLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYL 360
            +L   E+++A + N     ++ + + E+ +L    + L +++E L+        EL  L
Sbjct: 383 EELAELEAELAEIRN-----ELEELKREIESLEERLERLSERLEDLKEELKELEAELEEL 437

Query: 361 RWVNACLRYELRNYQA 376
           +     L  EL   + 
Sbjct: 438 QTELEELNEELEELEE 453

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.6 bits (124), Expect = 9e-07
 Identities = 45/227 (19%), Positives = 105/227 (46%), Gaps = 20/227 (8%)

Query: 139 ELERLRSLVLELQEREVKLEGELLEYYGLKEQ----ESDIVELQRQLKIKTVEIDMLNIT 194
           + ER ++L+ E +E E      L E   L+ Q    E  +  L+ +L+  T EI  L   
Sbjct: 209 KAERYQALLKEKREYEGYEL--LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKR 266

Query: 195 INSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGL 254
           +  ++   ++L ++I      K   E  + ++KE   +++ +    +  +   ++++   
Sbjct: 267 LEEIEQLLEELNKKI------KDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320

Query: 255 QAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLS 314
           + +  +    + E++K L  +++LE E+ E +++  +L  E  EL  +L+   +++    
Sbjct: 321 EERLAKL---EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEE-- 375

Query: 315 NMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLR 361
                ++ A+ R+E+ + R   + L +++  L+       EEL  L 
Sbjct: 376 ---VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLS 419

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 68/297 (22%), Positives = 141/297 (47%), Gaps = 11/297 (3%)

Query: 45  QQQSQGKEKQQFTCPDGGLREKKREEEEEEEEVKLISSIFDRARGSSSNTDDE-DILPEF 103
           Q+      + +       L+E ++E EE EEE+  +    +  +      + E + L   
Sbjct: 216 QELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSE 275

Query: 104 EDLLSGEIEYQLPIDKFDEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLE 163
            + L  E+E         + E  ++ E E++     LE L + + EL+ER  +L+ ++  
Sbjct: 276 LEELREELEELQEELLELKEEIEEL-EGEISLLRERLEELENELEELEERLEELKEKIEA 334

Query: 164 Y-YGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSY-VKKELEV 221
               L+E+E+ + EL++ L       + L   +++L  E ++L E + +    ++ EL  
Sbjct: 335 LKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAE 394

Query: 222 ARNKIKELQRQIQ---LDANQTKGQLLLLKQQVSGLQAKEEEAIK----KDVELEKKLKS 274
            RN+++EL+R+I+       +   +L  LK+++  L+A+ EE        + ELE+  + 
Sbjct: 395 IRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQ 454

Query: 275 VKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNN 331
           +++L   + EL+R+  ELQ E + L  +L + E+++  L     + +  +A  E   
Sbjct: 455 LEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALE 511

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 59/259 (22%), Positives = 110/259 (42%), Gaps = 4/259 (1%)

Query: 127 KVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLK-EQESDIVELQRQLKIKT 185
           +    E+ +   EL+     + EL     +LE +L E      E E +I ELQ++L    
Sbjct: 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA 294

Query: 186 VEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLL 245
            EI  L      L+     L+ Q+ +     +ELE   +++ E   +++    + K +L 
Sbjct: 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354

Query: 246 LLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDA 305
            L+ ++  L+A+ EE   +  ELE++L++++    +V +L+ +   L  E   L  +L+ 
Sbjct: 355 SLEAELEELEAELEELESRLEELEEQLETLRS---KVAQLELQIASLNNEIERLEARLER 411

Query: 306 AESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVNA 365
            E +   L    E         E+  L+   ++L +++E LQ       E L  LR    
Sbjct: 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471

Query: 366 CLRYELRNYQAPAGKTSAR 384
                L   +    +  AR
Sbjct: 472 EAEQALDAAERELAQLQAR 490

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 45/215 (20%), Positives = 97/215 (45%), Gaps = 20/215 (9%)

Query: 167 LKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQI----AQSSYVKKELEVA 222
           ++E E  I EL+ ++      +  L   +  L+ E ++L++++     Q S ++K+L   
Sbjct: 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738

Query: 223 RNKIK---ELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKD-- 277
             +++   E   Q+  +  + + ++  L++++   + +  EA  +  ELE +++ +K+  
Sbjct: 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798

Query: 278 --LEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTE---------SEKVAKAR 326
             L   + EL+ +   L  E   L  +L++ E +IA+     E         SE +    
Sbjct: 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858

Query: 327 EEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLR 361
            E+  L    ++L  ++E L   R    E L  LR
Sbjct: 859 AEIEELEELIEELESELEALLNERASLEEALALLR 893

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 49/197 (24%), Positives = 107/197 (54%), Gaps = 13/197 (6%)

Query: 159 GELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKE 218
             L +   LKE E ++ EL+ QL+    E+  L   + SL+   ++L+ Q+ +   ++++
Sbjct: 661 SSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEE---LERQ 717

Query: 219 LEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKL----KS 274
           LE  + ++  L+ ++     Q + +L  L++++  L+ + EE  ++  ELE++L    ++
Sbjct: 718 LEELKRELAALEEEL----EQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEA 773

Query: 275 VKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAR--EEVNNL 332
           +  L+ E+ EL+ K + LQ E  EL  +L+ AE ++ +L    ES +  + R  +E+  L
Sbjct: 774 LAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEEL 833

Query: 333 RHANDDLLKQVEGLQMN 349
               ++L ++++ L+  
Sbjct: 834 EEEIEELEEKLDELEEE 850

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 67/314 (21%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 63   LREKKREEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPIDKFDE 122
            L E +R+ EE + E+  +    ++ +      ++E      E+L     E Q  +++   
Sbjct: 711  LEELERQLEELKRELAALEEELEQLQSRLEELEEE-----LEELEEELEELQERLEEL-- 763

Query: 123  AEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLK 182
             E+ +  E  +A    E+E L      LQE   +LE EL      +E E  +  L+R+L+
Sbjct: 764  EEELESLEEALAKLKEEIEELEEKRQALQEELEELEEEL------EEAERRLDALERELE 817

Query: 183  IKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKG 242
                  + L   I  L+ E ++L+E++ +     +ELE    ++KE   +++ +  + + 
Sbjct: 818  SLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELED 877

Query: 243  QLLLLKQQVSGLQAKEEEAIKKDVELEKK-----------LKSVKDLEVEVVELKRKNKE 291
            +L  L+++   L+ +  E   +  EL+++              ++ LEVE+ EL+ + +E
Sbjct: 878  ELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEE 937

Query: 292  LQIEKRELLV--KLDAAESKIASLS--NMTESEKVAKAREEVNNLRHANDDLLKQVEGLQ 347
               +  E  +  +++  E +I +L   N+   E+  +  E    L+   +DL +  E L 
Sbjct: 938  EYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLL 997

Query: 348  MNRFGEVEELVYLR 361
                 E+++    R
Sbjct: 998  -EVIEELDKEKRER 1010

Length = 1163

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 211 QSSYVKKELEVARNKIKELQRQI---QLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVE 267
            S Y+      AR ++ ELQ+++   Q +  + + QL  L+Q+   L+ +      +   
Sbjct: 54  LSRYLSDT-PSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELER 112

Query: 268 LEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESE 320
           L+K+L  +K L    +EL  +N+EL+ E  EL  + +A E++   L    +  
Sbjct: 113 LQKELARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQRR 165

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 36/167 (21%), Positives = 79/167 (47%), Gaps = 9/167 (5%)

Query: 141 ERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTV----EIDMLNITIN 196
           E +  +   L+E E KL    LE   L+++  ++ E +  LK +      EI+ LN    
Sbjct: 805 EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864

Query: 197 SLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQA 256
            L+ E ++L+  +        +L+  R++++   R+++    + + Q+   ++++S L+A
Sbjct: 865 ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKA 924

Query: 257 KEEEAIKKDVELEKKLKSVK-----DLEVEVVELKRKNKELQIEKRE 298
           K E   ++  E+E      +     +L +E V+ + +  E +I   E
Sbjct: 925 KLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALE 971

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 39/262 (14%), Positives = 83/262 (31%), Gaps = 19/262 (7%)

Query: 83  IFDRARGSSSNTDDEDILPE--FEDLLSGEIEYQLPIDKFDEAEKNKVYETEMADNAREL 140
           I   A+  +     E+   E                +       +  +    +       
Sbjct: 160 ILPPAQLKNPYEQSEEDFKELQLNSGADIVRLLARFLGLGGLLAEELLSRAGLDKKVPAK 219

Query: 141 ERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQA 200
           +     + +++E   +L   L   Y  K+++   V   +          + N  ++    
Sbjct: 220 DLFEEEIKKVREALEELLNPLKPNYYYKDEKYLDVVPLKAYADLE---KLFNEALDEKFE 276

Query: 201 ERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQL-----DANQTKGQLLLLKQQ----- 250
             K  Q        ++KEL+   NK+++ + +++      +  + KG+LL    Q     
Sbjct: 277 RDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEG 336

Query: 251 ---VSGLQAKEEEAIKKDVELEKKLKSVKDLEVEV-VELKRKNKELQIEKRELLVKLDAA 306
              V        E IK +++  K          +   +LK     L  +  EL   +   
Sbjct: 337 LKSVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYY 396

Query: 307 ESKIASLSNMTESEKVAKAREE 328
           ES   +L      + + + REE
Sbjct: 397 ESAKTALEKAEGKKAIEEIREE 418

Length = 564

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 45/212 (21%), Positives = 103/212 (48%), Gaps = 32/212 (15%)

Query: 167 LKEQESDIVELQRQLK-----------IKTVEIDMLNITINSLQAERKKLQEQIAQSSYV 215
           L E E  +  L+RQ +           ++ +E+ +L + +  L+ E ++LQE++ +    
Sbjct: 195 LNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKE---A 251

Query: 216 KKELEVARNKIKELQRQIQL----------DANQTKGQLLLLKQQVSGLQAKEEEAIKKD 265
           ++ELE    +++EL+ +++           +  + + +L  L  ++S L+ +++   ++ 
Sbjct: 252 EEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311

Query: 266 VELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKA 325
             LE++L+    LE ++ EL+ K  EL  E  EL  KL+  + ++ SL       ++ + 
Sbjct: 312 ANLERQLEE---LEAQLEELESKLDELAEELAELEEKLEELKEELESL-----EAELEEL 363

Query: 326 REEVNNLRHANDDLLKQVEGLQMNRFGEVEEL 357
             E+  L    ++L +Q+E L+        ++
Sbjct: 364 EAELEELESRLEELEEQLETLRSKVAQLELQI 395

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 40/208 (19%), Positives = 95/208 (45%), Gaps = 8/208 (3%)

Query: 127 KVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQ-ESDIVELQRQLKIKT 185
              E E+ D    L +L + + +L     +LE E+ E    +++   +  EL+ +L+   
Sbjct: 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR 370

Query: 186 VEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLL 245
            E++ ++      + E K  +E++ +      EL+   ++++E  +++  +       + 
Sbjct: 371 AELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIA 430

Query: 246 LLKQQVSGLQAKEEEAIKKDVELEKKLKS----VKDLEVEVVELKRKNKELQIEKRELLV 301
            ++ +++ L+ ++E+   +  + E KL+     +   E E+ +LK +   ++ E  +L  
Sbjct: 431 GIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490

Query: 302 KLDAAESKIASLSNMTESEKVAKAREEV 329
           +L  AE   A      E  +  +A EEV
Sbjct: 491 ELAEAE---AQARASEERVRGGRAVEEV 515

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 13/226 (5%)

Query: 66  KKREEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLS---GEIEYQLPIDKFDE 122
           +   EE EE   +L   I              + L +    L     E+E +L     + 
Sbjct: 315 ENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEEL 374

Query: 123 AEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLK 182
            E  +    E+A+   EL  +R+ + EL+     LE  L      +     + +L+ +LK
Sbjct: 375 EELFEALREELAELEAELAEIRNELEELKREIESLEERL------ERLSERLEDLKEELK 428

Query: 183 IKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKG 242
               E++ L   +  L  E ++L+EQ+ +     KELE    +++E  ++++ + +  + 
Sbjct: 429 ELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEA 488

Query: 243 QLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRK 288
           +L  L+ +    Q            LE  L  V     E++++K K
Sbjct: 489 RLDRLEAEQRASQGVRA----VLEALESGLPGVYGPVAELIKVKEK 530

Length = 1163

>gnl|CDD|218661 pfam05622, HOOK, HOOK protein

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 68/252 (26%), Positives = 111/252 (44%), Gaps = 31/252 (12%)

Query: 137 ARELERLRSLVLELQEREVKLEGELLEY-YGLKEQESDIVELQRQ---LKIKTVEIDMLN 192
           +++   L+S + +LQE   +LE    +Y    +E E ++ ELQ +   L     E   L 
Sbjct: 238 SKKYNLLQSQLEQLQEENFRLEAARDDYRIKCEELEKELAELQHRNDELTSLAAESQALK 297

Query: 193 ITINSLQAERKKLQEQIAQSSYVKKELEV---ARNKIKEL--------QRQIQLD----- 236
             I+ L+    K ++  AQ    KK+LE     R ++K L        Q  +QL+     
Sbjct: 298 DEIDVLRESSDKAKKLEAQVETYKKKLEDLNDLRRQVKLLEERNAMYMQNTVQLEEELKK 357

Query: 237 ANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKD-----------LEVEVVEL 285
           AN  +GQL   K+QV  L AK  E  KK  +LE + K +++           L  E   L
Sbjct: 358 ANAARGQLETYKRQVQELHAKLSEESKKADKLEFEYKRLEEKLEALQKEKERLLAERDSL 417

Query: 286 KRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEG 345
           +  N+EL+  + +      A      S  N+      ++ RE++  L+H N  L    EG
Sbjct: 418 RETNEELRCGQAQQDQLTQADAGTSPSGDNLAAELLPSEYREKLIRLQHENKMLRLGQEG 477

Query: 346 LQMNRFGEVEEL 357
            +  R  E+++L
Sbjct: 478 SENERITELQQL 489

This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. Length = 713

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 56/265 (21%), Positives = 118/265 (44%), Gaps = 23/265 (8%)

Query: 63  LREKKREEEEEEEEVKLISSIFDRARGSSSNTDDE-DILPEFEDLLSGEIEYQLPIDKFD 121
           ++EK++E EE   E+  ISS     R      + E   L E ++ +    +    ++   
Sbjct: 195 IKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSK 254

Query: 122 EAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQL 181
              + K+ E E        ER+  L  E++E E K   EL E     E+   + E   + 
Sbjct: 255 RKLEEKIRELE--------ERIEELKKEIEELEEK-VKELKELKEKAEEYIKLSEFYEEY 305

Query: 182 KIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTK 241
             +  EI+     ++ L+ E   ++E+I +    ++ LE  + K+KEL++++     + +
Sbjct: 306 LDELREIEK---RLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRL----EELE 358

Query: 242 GQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLV 301
            +  L +      +AK ++   + ++      + + LE E+ EL++  +E++ E  ++  
Sbjct: 359 ERHELYE------EAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITA 412

Query: 302 KLDAAESKIASLSNMTESEKVAKAR 326
           ++   + +I  L    E  K AK +
Sbjct: 413 RIGELKKEIKELKKAIEELKKAKGK 437

Length = 880

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.7 bits (97), Expect = 0.001
 Identities = 48/234 (20%), Positives = 104/234 (44%), Gaps = 13/234 (5%)

Query: 124  EKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKI 183
            EK K  E + A+  + +   ++   + +  E ++E  +  Y   K+ +++  +   + KI
Sbjct: 1562 EKKKAEEAKKAEEDKNMALRKAEEAK-KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620

Query: 184  KTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQ 243
            K  E+         ++  +KK  E+  ++  +KK  E  + K  E  ++ + D       
Sbjct: 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED------- 1673

Query: 244  LLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLE-VEVVELKRKNKELQIEKRELLVK 302
                K++    +  EE+  K    L+K+ +  K  E ++  E + K K  +++K E   K
Sbjct: 1674 ----KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENK 1729

Query: 303  LDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEE 356
            + A E+K  +  +  ++E+  K  EE   + H   +  K+ E ++  +   +EE
Sbjct: 1730 IKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783

Length = 2084

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 54/288 (18%), Positives = 124/288 (43%), Gaps = 7/288 (2%)

Query: 61  GGLREKKREEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPIDKF 120
            G REK++++E  ++ ++   ++ +           E  L E        +EY    +K 
Sbjct: 164 AGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKK---ALEYYQLKEKL 220

Query: 121 DEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQ-R 179
           +  E+N +Y   +  N   ++ L+ L+ + QE     + EL +   +  Q     + + +
Sbjct: 221 ELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEK 280

Query: 180 QLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQ 239
           + K++  E+ +L      L++E  KL+ +        KE E    K+++  ++ + +  +
Sbjct: 281 EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEE 340

Query: 240 TKGQLLLLKQQVSGLQAKEEEAIK---KDVELEKKLKSVKDLEVEVVELKRKNKELQIEK 296
            + +L  L+ +    + +EE+  K   K  +LE++L + K LE E +    K KE ++E 
Sbjct: 341 LEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELEL 400

Query: 297 RELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVE 344
           +    K      +++        E+  +  + V  L  + +    ++ 
Sbjct: 401 KNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLT 448

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 45/211 (21%), Positives = 98/211 (46%), Gaps = 25/211 (11%)

Query: 167 LKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKK-ELEVARNK 225
            +E E  +   +  L+     ++ L   +  L+ + +K +      + +++ EL +   K
Sbjct: 174 KEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAK 233

Query: 226 IKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVK--------- 276
           +KEL++++     + + +L  L++++  LQ + EEA K+  EL+ +L+ ++         
Sbjct: 234 LKELRKEL----EELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEE 289

Query: 277 ---------DLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKARE 327
                    +LE E+  L+ + +EL+ E  EL  +L+  + KI +L    E  +     E
Sbjct: 290 LLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLL--E 347

Query: 328 EVNNLRHANDDLLKQVEGLQMNRFGEVEELV 358
           E+  L    ++  +++E        E+EEL 
Sbjct: 348 ELEQLLAELEEAKEELEEKLSALLEELEELF 378

Length = 1163

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 16/152 (10%)

Query: 199 QAERKKLQEQIAQSSYVKKELEV-ARNKIKELQRQIQLDANQTKGQLLL----LKQQVSG 253
           +  ++ ++E   ++  +KKE  + A+ ++ +L+ +++ +  + + +L      L Q+   
Sbjct: 32  ELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREET 91

Query: 254 LQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASL 313
           L  K E   KK+  LEKK K + + E  + E + + +EL  E+RE L            +
Sbjct: 92  LDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREEL----------ERI 141

Query: 314 SNMTESEKVAKAREEV-NNLRHANDDLLKQVE 344
           S +T+ E      EEV    RH    L+K++E
Sbjct: 142 SGLTQEEAKEILLEEVEEEARHEAAKLIKEIE 173

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 43/210 (20%), Positives = 95/210 (45%), Gaps = 7/210 (3%)

Query: 123 AEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQL- 181
            E         +     L+     + EL+    +LE ++     L+E E +I EL+ +L 
Sbjct: 252 EELKARLLEIESLELEALKIREEELRELERLLEELEEKIER---LEELEREIEELEEELE 308

Query: 182 --KIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQ 239
             +    E++ L   + SL+   +KL+E++ +     +EL   +N++ +L  +   +  +
Sbjct: 309 GLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEE 368

Query: 240 TKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKS-VKDLEVEVVELKRKNKELQIEKRE 298
              +L    ++      + EEAI++  E   +L + +++++ E+ EL+++ +EL+ E  E
Sbjct: 369 RLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEE 428

Query: 299 LLVKLDAAESKIASLSNMTESEKVAKAREE 328
           L  ++   E +I  L +            E
Sbjct: 429 LEEEIKKLEEQINQLESKELMIAELAGAGE 458

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 62/274 (22%), Positives = 122/274 (44%), Gaps = 37/274 (13%)

Query: 63  LREKKREEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPIDKFDE 122
           L E+   E+EE E  + I  +    R       +     E E+ L  E+E +L      E
Sbjct: 486 LEEELSREKEEAELREEIEELEKELRELEEELIELL---ELEEALKEELEEKL------E 536

Query: 123 AEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQL- 181
             +N + E E      +L++L+  + +L++R  +L+  L E   L+ ++ ++ EL+ +L 
Sbjct: 537 KLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLK 596

Query: 182 ----KIKTVEIDMLNI------------------TINSLQAERKKLQEQIAQSSYVKKEL 219
               K+K +E  +  +                      L++E +KL  Q      ++  L
Sbjct: 597 ELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAAL 656

Query: 220 EVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLE 279
           E    K++EL+ +I+ +  + +     L++++  L+  EEE  +   ELE+ LK + ++E
Sbjct: 657 EELEEKVEELEAEIRRELQRIE-NEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIE 715

Query: 280 VEVVELKRKNKELQIEKRELLVKLDAAESKIASL 313
             + EL    +  + E  EL  +L+  E  +  L
Sbjct: 716 QLIEEL----ESRKAELEELKKELEKLEKALELL 745

Length = 908

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 40.1 bits (95), Expect = 0.003
 Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 22/130 (16%)

Query: 199 QAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKE 258
           + E  KL+ +       +KEL   RN++++L++++             L +++  L+ +E
Sbjct: 63  KEEIHKLRNE------FEKELRERRNELQKLEKRLLQKEEN-------LDRKLELLEKRE 109

Query: 259 EEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTE 318
           EE  KK+ ELE+K + ++  E E+ EL  +    Q+++ E +  L A E+K   L  + E
Sbjct: 110 EELEKKEKELEQKQQELEKKEEELEELIEE----QLQELERISGLTAEEAKEILLEKVEE 165

Query: 319 SEKVAKAREE 328
                +AR E
Sbjct: 166 -----EARHE 170

Length = 520

>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 40/169 (23%), Positives = 80/169 (47%), Gaps = 7/169 (4%)

Query: 177 LQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLD 236
           L+   KI T E + L   IN L+    +   +I  ++  K  +E+   ++++L+ ++ + 
Sbjct: 155 LEDLEKILT-EKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIR 213

Query: 237 ANQTKGQLLLLKQQVSGLQAKEEEAIKKDVE-LEKKLKSVKDLEVEVVELKRKNKELQIE 295
                  +  L +++  L+ +E   +K D++ L+ +L  V + E  V +L+++   L   
Sbjct: 214 GATEGLCVHSLSKELDVLK-EENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDAS 272

Query: 296 KRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVE 344
            REL  K   A+  ++ LS +    +     E+V NL+   D    QVE
Sbjct: 273 LRELESKFIVAQEDVSKLSPL----QYDCWWEKVENLQDLLDRATNQVE 317

Length = 977

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 43/175 (24%), Positives = 94/175 (53%), Gaps = 9/175 (5%)

Query: 176 ELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQL 235
            ++  +K K  E++ +   IN + +E  +L+E++ +     KELE  + +I+EL+++++ 
Sbjct: 190 NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELES 249

Query: 236 DANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLE---VEVVELKRKNKEL 292
                +G    L++++  L+ + EE  K+  ELE+K+K +K+L+    E ++L    +E 
Sbjct: 250 ----LEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEY 305

Query: 293 QIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQ 347
             E RE+  +L   E +I  +      +++ +  E +  L+    +L K++E L+
Sbjct: 306 LDELREIEKRLSRLEEEINGIEE--RIKELEEKEERLEELKKKLKELEKRLEELE 358

Length = 880

>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 75/418 (17%), Positives = 148/418 (35%), Gaps = 48/418 (11%)

Query: 63   LREKKREEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQLPIDKFDE 122
            +   +R+ +E + +VK ISS         +   + +I+ E +  LS ++   L       
Sbjct: 877  VELAERQLQELKIDVKSISS-----LKLVNLELESEII-ELKKSLSSDLIENLEFKTELI 930

Query: 123  AEKNKVYETEMADNARELERLR-SLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQL 181
            A   K+      +    +E ++   + +L E E KL+    EY  L ++ +    L R+ 
Sbjct: 931  ARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKST---ILVREG 987

Query: 182  KIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTK 241
                 E+      +  L  +   LQE         K+L+    ++ ELQ   ++ ++++ 
Sbjct: 988  NKANSELKNFKKELAELSKQYGALQES-------TKQLKELPVEVAELQSASKIISSEST 1040

Query: 242  GQLLLLKQQ----VSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKR 297
               +L   Q    +  L+  + +A  K ++L ++   + D ++  +E   +N    I  +
Sbjct: 1041 ELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLE-STENLLKTINVK 1099

Query: 298  ELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQV----EGLQMNRFGE 353
            +L V          +L       +   A+    NL       L Q+    E +       
Sbjct: 1100 DLEVTNR-------NLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVL 1152

Query: 354  VEELVYLRWVNA----------CLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLML 403
              EL  L W                 E R YQ+      ++  +  ++    E       
Sbjct: 1153 QLELDGLFWEANLEALPSPPPFAALSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFSK 1212

Query: 404  EYAGSERGQVDTDLESNFSHPS--SPGSEDFDNASIDSSTSKYSNLSKKPSLIQKLKK 459
             ++G  RG     L S    P+  S   + F+N +    T    +      L+  L  
Sbjct: 1213 IFSGWPRGDKLKKLISEGWVPTEYSTSLKGFNNLNKKFDTPASMS---NEKLLSLLNS 1267

Length = 1463

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 26/109 (23%), Positives = 56/109 (51%), Gaps = 4/109 (3%)

Query: 257 KEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNM 316
             +   K   ELE   K+++ LE+E+ +L+ +  +L+ E +E+  ++  AE K++++ + 
Sbjct: 29  IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDE 88

Query: 317 TESEK----VAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLR 361
            E       +  A+E +N+L     +L++++E L+       E L  L 
Sbjct: 89  RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE 137

Length = 239

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	520
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.64
PHA02562	562	46 endonuclease subunit; Provisional	97.64
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.62
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.53
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.52
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.42
PRK02224	880	chromosome segregation protein; Provisional	97.39
PRK03918	880	chromosome segregation protein; Provisional	97.38
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.37
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.36
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.33
PRK03918	880	chromosome segregation protein; Provisional	97.33
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.31
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.29
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.27
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	97.19
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	97.19
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.1
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.07
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.05
PRK02224	880	chromosome segregation protein; Provisional	97.02
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	97.0
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	96.97
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.91
PRK11637	428	AmiB activator; Provisional	96.85
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	96.79
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.76
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.71
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.69
PHA02562	562	46 endonuclease subunit; Provisional	96.67
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.66
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.65
PRK01156	895	chromosome segregation protein; Provisional	96.58
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.58
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.53
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.42
PRK01156	895	chromosome segregation protein; Provisional	96.4
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	96.39
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.36
PRK04863	1486	mukB cell division protein MukB; Provisional	96.13
PRK04863	1486	mukB cell division protein MukB; Provisional	96.12
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	96.1
PRK09039	343	hypothetical protein; Validated	96.06
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.06
KOG0963	629	consensus Transcription factor/CCAAT displacement	95.93
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	95.92
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	95.89
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.82
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.79
COG4942	420	Membrane-bound metallopeptidase [Cell division and	95.79
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	95.76
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	95.76
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.67
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	95.66
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.65
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	95.65
PLN03188	1320	kinesin-12 family protein; Provisional	95.56
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	95.5
KOG1937	521	consensus Uncharacterized conserved protein [Funct	95.49
PRK11637	428	AmiB activator; Provisional	95.41
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.29
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	95.27
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	95.27
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	95.22
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	95.21
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.13
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	95.02
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	95.0
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	94.95
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	94.94
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	94.84
KOG0971	1243	consensus Microtubule-associated protein dynactin	94.83
PRK09039	343	hypothetical protein; Validated	94.82
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.81
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	94.72
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	94.61
KOG0979	1072	consensus Structural maintenance of chromosome pro	94.59
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	94.59
PF11365	96	DUF3166: Protein of unknown function (DUF3166); In	94.55
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	94.41
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.18
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	94.09
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.09
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	94.07
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	93.84
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	93.8
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	93.55
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	93.43
PRK04778	569	septation ring formation regulator EzrA; Provision	93.35
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	93.24
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	93.2
KOG0933	1174	consensus Structural maintenance of chromosome pro	93.16
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	93.04
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.0
PRK04778	569	septation ring formation regulator EzrA; Provision	92.84
COG4942	420	Membrane-bound metallopeptidase [Cell division and	92.81
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	92.75
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	92.7
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	92.62
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	92.56
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	92.51
COG2433	652	Uncharacterized conserved protein [Function unknow	92.49
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	92.44
PF10186	302	Atg14: UV radiation resistance protein and autopha	92.43
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	92.36
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	92.36
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	92.1
PF14662	193	CCDC155: Coiled-coil region of CCDC155	92.07
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.01
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	91.95
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	91.85
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	91.48
PF06548	488	Kinesin-related: Kinesin-related; InterPro: IPR010	91.39
KOG0996	1293	consensus Structural maintenance of chromosome pro	91.31
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	91.28
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	91.27
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	91.09
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	91.02
KOG0249	916	consensus LAR-interacting protein and related prot	90.99
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	90.83
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	90.77
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	90.69
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	90.68
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	90.62
KOG0963	629	consensus Transcription factor/CCAAT displacement	90.56
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	90.48
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	90.48
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	90.44
COG2433	652	Uncharacterized conserved protein [Function unknow	90.27
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	90.25
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	90.11
PRK12704	520	phosphodiesterase; Provisional	90.11
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	90.07
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	89.86
PF00038	312	Filament: Intermediate filament protein; InterPro:	89.42
KOG0933	1174	consensus Structural maintenance of chromosome pro	89.4
PF15294	278	Leu_zip: Leucine zipper	89.3
PRK10884	206	SH3 domain-containing protein; Provisional	89.05
KOG4673	961	consensus Transcription factor TMF, TATA element m	89.04
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	88.79
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	88.61
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	88.4
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	88.36
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	88.33
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	88.25
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	88.05
PF06632	342	XRCC4: DNA double-strand break repair and V(D)J re	88.04
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	87.93
COG5185	622	HEC1 Protein involved in chromosome segregation, i	87.87
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	87.77
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	87.52
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	87.51
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	87.25
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	87.03
KOG0018	1141	consensus Structural maintenance of chromosome pro	86.73
KOG3091	508	consensus Nuclear pore complex, p54 component (sc	86.57
KOG0249	916	consensus LAR-interacting protein and related prot	86.31
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	86.17
PRK10361	475	DNA recombination protein RmuC; Provisional	86.13
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	86.0
PLN02939	977	transferase, transferring glycosyl groups	85.73
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	85.46
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	84.89
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	84.7
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	84.66
KOG4001	259	consensus Axonemal dynein light chain [Cytoskeleto	84.31
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	84.02
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	83.99
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	83.82
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	83.66
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	83.58
PRK10884	206	SH3 domain-containing protein; Provisional	83.41
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	82.94
PF10186	302	Atg14: UV radiation resistance protein and autopha	82.92
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	82.83
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	82.77
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	82.52
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	82.51
PRK00106	535	hypothetical protein; Provisional	82.3
PF04859	131	DUF641: Plant protein of unknown function (DUF641)	82.2
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	82.19
KOG0979	1072	consensus Structural maintenance of chromosome pro	82.18
PRK11281	1113	hypothetical protein; Provisional	81.49
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	81.49
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	80.88
KOG4302	660	consensus Microtubule-associated protein essential	80.85
KOG1003	205	consensus Actin filament-coating protein tropomyos	80.84
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	80.83
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	80.82
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	80.65
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	80.31
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	80.17
PRK15422	79	septal ring assembly protein ZapB; Provisional	80.12

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.64  E-value=0.054  Score=62.23  Aligned_cols=12  Identities=25%  Similarity=0.291  Sum_probs=6.1

Q ss_pred             hHHHHHHHHHHhh
Q 046111          394 SQERAKQLMLEYA  406 (520)
Q Consensus       394 SqekAKqLmleya  406 (520)
                      +.+.|+.+| +|.
T Consensus       556 ~~~~a~~~i-~~l  567 (1164)
T TIGR02169       556 DDAVAKEAI-ELL  567 (1164)
T ss_pred             CHHHHHHHH-HHH
Confidence            445566554 444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.64  E-value=0.038  Score=59.30  Aligned_cols=89  Identities=19%  Similarity=0.188  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 046111          137 ARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVK  216 (520)
Q Consensus       137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~  216 (520)
                      ..++..|...+..++.+-..++..+..+...  ....+.++++++..-..++..+...+..|+.+-..+..++..+..+.
T Consensus       180 ~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~--~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L  257 (562)
T PHA02562        180 NQQIQTLDMKIDHIQQQIKTYNKNIEEQRKK--NGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAAL  257 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence            4555666666666555555444444444331  22346666666666666666666666666666666665555555544


Q ss_pred             HHHHHHHHHHH
Q 046111          217 KELEVARNKIK  227 (520)
Q Consensus       217 ~ELe~ar~Kir  227 (520)
                      .+++.+..+++
T Consensus       258 ~~l~~~~~~~~  268 (562)
T PHA02562        258 NKLNTAAAKIK  268 (562)
T ss_pred             HHHHHHHHHHH
Confidence            44444444333

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.62  E-value=0.017  Score=68.31  Aligned_cols=212  Identities=24%  Similarity=0.324  Sum_probs=122.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH------
Q 046111          135 DNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQ------  208 (520)
Q Consensus       135 ~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~q------  208 (520)
                      ..+.++..+....+.++++...++.++-++.      ..+++|+++|..-.+++..+...|+-|+..-..++++      
T Consensus       782 ~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr------~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~  855 (1293)
T KOG0996|consen  782 KLERALSKMSDKARQHQEQLHELEERVRKLR------ERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVV  855 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence            3445555555556666666555555555543      3567777777777776666655555444444433333      


Q ss_pred             --------HHhHHhHHHHHHHH-----H-HHHHHHHHHHHHHH----HhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHH
Q 046111          209 --------IAQSSYVKKELEVA-----R-NKIKELQRQIQLDA----NQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEK  270 (520)
Q Consensus       209 --------v~e~~~v~~ELe~a-----r-~Kir~Lqkk~~~~a----~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~Ek  270 (520)
                              -..+..+.+|++.+     + .+|+.||.+|....    ...+..+..+.+|+..|.+.   +.+....+++
T Consensus       856 d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~---i~k~~~~i~~  932 (1293)
T KOG0996|consen  856 DKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEAD---IAKLTVAIKT  932 (1293)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHH---HHHhHHHHhc
Confidence                    22344444555554     4 77888888877543    33455555555555554333   3444444444


Q ss_pred             HHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcC-CCchh-HHHHHHHHHHHhhhhhcHHHHHHHHHHhh
Q 046111          271 KLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLS-NMTES-EKVAKAREEVNNLRHANDDLLKQVEGLQM  348 (520)
Q Consensus       271 Kl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~ls-nv~e~-~~Va~a~eE~~~LR~~NEdL~kqVEqLq~  348 (520)
                      .-..+..+...+.+|.+-...+..+...|...+...+.++..+. +..+. .-...++.++..++..=+++.+.+-.|+.
T Consensus       933 s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~ 1012 (1293)
T KOG0996|consen  933 SDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKA 1012 (1293)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555666556666666666555555554443321 11222 23345678888888888889999999999


Q ss_pred             cccchhhH
Q 046111          349 NRFGEVEE  356 (520)
Q Consensus       349 dR~seVEE  356 (520)
                      +|.. ++=
T Consensus      1013 ~rId-~~~ 1019 (1293)
T KOG0996|consen 1013 ERID-IEN 1019 (1293)
T ss_pred             hhcc-HHH
Confidence            8877 553

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.53  E-value=0.19  Score=57.42  Aligned_cols=6  Identities=17%  Similarity=-0.175  Sum_probs=2.5

Q ss_pred             HHHHHH
Q 046111            9 VAASIA   14 (520)
Q Consensus         9 va~s~a   14 (520)
                      -|++|+
T Consensus        41 ~ai~~~   46 (1179)
T TIGR02168        41 DAIRWV   46 (1179)
T ss_pred             HHHHHH
Confidence            344444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.52  E-value=0.13  Score=58.75  Aligned_cols=49  Identities=27%  Similarity=0.231  Sum_probs=25.6

Q ss_pred             HHHHHhhhhhcHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhc
Q 046111          326 REEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVNACLRYELRNY  374 (520)
Q Consensus       326 ~eE~~~LR~~NEdL~kqVEqLq~dR~seVEELVYLRWVNACLR~ELrn~  374 (520)
                      ..+...++..-..+..+++.++.....--.++-.++.--+=++.++.+.
T Consensus       886 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l  934 (1179)
T TIGR02168       886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL  934 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555565555554444455555555555555555444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.42  E-value=0.27  Score=56.64  Aligned_cols=11  Identities=36%  Similarity=0.543  Sum_probs=4.9

Q ss_pred             HHHHHhhhhhc
Q 046111          326 REEVNNLRHAN  336 (520)
Q Consensus       326 ~eE~~~LR~~N  336 (520)
                      ..++..+...|
T Consensus       964 ~~~i~~l~~vN  974 (1164)
T TIGR02169       964 EEEIRALEPVN  974 (1164)
T ss_pred             HHHHHHcCCCC
Confidence            34444444444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=97.39  E-value=0.065  Score=61.02  Aligned_cols=99  Identities=20%  Similarity=0.228  Sum_probs=47.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHh-
Q 046111          136 NARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSY-  214 (520)
Q Consensus       136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~-  214 (520)
                      +..++..|...+..+..+-..|+..+-....+.+....+-++++.+.....+++....++..|+.+-..|++.+.++.. 
T Consensus       480 ~~~~~~~le~~l~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~  559 (880)
T PRK02224        480 LEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREA  559 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555554444333333221111222222233344444444555555666666666666666666665555 


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHH
Q 046111          215 ---VKKELEVARNKIKELQRQIQ  234 (520)
Q Consensus       215 ---v~~ELe~ar~Kir~Lqkk~~  234 (520)
                         +..++..+..++..+++++.
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~  582 (880)
T PRK02224        560 AAEAEEEAEEAREEVAELNSKLA  582 (880)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHH
Confidence               33344444445555555554

>PRK03918 chromosome segregation protein; Provisional

Probab=97.38  E-value=0.13  Score=58.23  Aligned_cols=46  Identities=20%  Similarity=0.199  Sum_probs=21.0

Q ss_pred             HHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhc
Q 046111          268 LEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASL  313 (520)
Q Consensus       268 ~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~l  313 (520)
                      ++.....+..+..++.+++.....++.+..+|..++...+.++..+
T Consensus       607 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l  652 (880)
T PRK03918        607 LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEEL  652 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444444444444333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.37  E-value=0.14  Score=61.05  Aligned_cols=63  Identities=24%  Similarity=0.406  Sum_probs=28.2

Q ss_pred             HHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhc
Q 046111          275 VKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMN  349 (520)
Q Consensus       275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~d  349 (520)
                      +.+++.++.+|+.....++.+..++..+|..++...            ..+..++..++..-++|.+++..+...
T Consensus       837 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~------------~~l~~~l~~~~~~~~~l~~~l~~~~~~  899 (1163)
T COG1196         837 IEELEEKLDELEEELEELEKELEELKEELEELEAEK------------EELEDELKELEEEKEELEEELRELESE  899 (1163)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444332            223334444444444455554444433

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.36  E-value=0.085  Score=61.43  Aligned_cols=145  Identities=28%  Similarity=0.435  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHH--------HHHHHHHHHHHHHHHHHHHHh-----------
Q 046111          151 QEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDM--------LNITINSLQAERKKLQEQIAQ-----------  211 (520)
Q Consensus       151 qERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~--------L~~kI~sLEsEn~RL~~qv~e-----------  211 (520)
                      +||--.|+.++.-   |||   .+-+|+..|.+-.+|+..        -.-....||.+|.||.+-+..           
T Consensus       324 EERaesLQ~eve~---lkE---r~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d  397 (1243)
T KOG0971|consen  324 EERAESLQQEVEA---LKE---RVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQD  397 (1243)
T ss_pred             HHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            4555555555443   222   255666666666666543        233456788899999987764           


Q ss_pred             HHhHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHhhhhHHH---HHHhhhhHHHHHHHhhHHhHHHHHHHH
Q 046111          212 SSYVKKELEVARNKIKELQRQ---IQLDANQTKGQLLLLKQQVSGLQAKE---EEAIKKDVELEKKLKSVKDLEVEVVEL  285 (520)
Q Consensus       212 ~~~v~~ELe~ar~Kir~Lqkk---~~~~a~q~K~qi~~Lkq~V~~Lq~~E---ee~~~~d~E~EkKl~~l~~LE~Ev~EL  285 (520)
                      +-++.+|+|.-+.++.+|.+.   ++....++..+|+-||+||..-=.-|   +....+..++|.|.+-+.+==.++++|
T Consensus       398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEal  477 (1243)
T KOG0971|consen  398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEAL  477 (1243)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            557889999999999888764   56677778899999999997533333   334456667776654444433445566


Q ss_pred             HHHhHHHHHHHHHHHH
Q 046111          286 KRKNKELQIEKRELLV  301 (520)
Q Consensus       286 Rr~Nk~LQ~EK~eL~~  301 (520)
                      +..|.+|++-+++|..
T Consensus       478 ee~~EQL~Esn~ele~  493 (1243)
T KOG0971|consen  478 EEMNEQLQESNRELEL  493 (1243)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7778888887777643

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.33  E-value=0.033  Score=61.83  Aligned_cols=225  Identities=20%  Similarity=0.293  Sum_probs=126.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 046111          136 NARELERLRSLVLELQEREVKLEGELL-EYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSY  214 (520)
Q Consensus       136 ~~~EI~~Lr~lVeeLqERE~~LE~eLL-Ey~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~  214 (520)
                      ++.+|..|+.-|.+|+-+=...+..+. .--.+.++...+-.|+.++..-+..++.|...+.-|-.||.||..++....+
T Consensus       111 ~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~  190 (546)
T KOG0977|consen  111 LEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK  190 (546)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            345555555555555444322222221 1223455567788888888888888888888888888888888888877764


Q ss_pred             ------------------HHHHHHHHH----HHHHHHHHHHHHHH-HhhHHHHH-HHHHHHhhhhHHHHHHhhh-hHHHH
Q 046111          215 ------------------VKKELEVAR----NKIKELQRQIQLDA-NQTKGQLL-LLKQQVSGLQAKEEEAIKK-DVELE  269 (520)
Q Consensus       215 ------------------v~~ELe~ar----~Kir~Lqkk~~~~a-~q~K~qi~-~Lkq~V~~Lq~~Eee~~~~-d~E~E  269 (520)
                                        +.++|+.++    ..|++++++.+++. ..++.... -|++-+..|.++-+..+.. -.++|
T Consensus       191 ~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE  270 (546)
T KOG0977|consen  191 QLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIE  270 (546)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence                              667788888    88889998888887 55544332 2444444444444332222 22232


Q ss_pred             ----HHHhhHHh-----------HHHHHHHHHHH-------hHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHH
Q 046111          270 ----KKLKSVKD-----------LEVEVVELKRK-------NKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKARE  327 (520)
Q Consensus       270 ----kKl~~l~~-----------LE~Ev~ELRr~-------Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~e  327 (520)
                          .|++.++.           .=-|+..+|..       ..+|+-.|..|..+++.-+.++.......+. ..+.-..
T Consensus       271 ~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~-~L~~kd~  349 (546)
T KOG0977|consen  271 SWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQ-ALNDKDA  349 (546)
T ss_pred             HHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhh-hhhhHHH
Confidence                34444431           11344444444       4444444555555554444443322222211 2222245


Q ss_pred             HHHhhhhhcHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcC
Q 046111          328 EVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVNACLRYELRNYQ  375 (520)
Q Consensus       328 E~~~LR~~NEdL~kqVEqLq~dR~seVEELVYLRWVNACLR~ELrn~~  375 (520)
                      ++..+|..=..|+.+++.|=.              ++.-|+-|+--|.
T Consensus       350 ~i~~mReec~~l~~Elq~LlD--------------~ki~Ld~EI~~YR  383 (546)
T KOG0977|consen  350 EIAKMREECQQLSVELQKLLD--------------TKISLDAEIAAYR  383 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc--------------hHhHHHhHHHHHH
Confidence            555555555556766666643              4566777876664

>PRK03918 chromosome segregation protein; Provisional

Probab=97.33  E-value=0.14  Score=58.06  Aligned_cols=120  Identities=19%  Similarity=0.273  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 046111          137 ARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVK  216 (520)
Q Consensus       137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~  216 (520)
                      +.-...++...+.++.+-..|+..+-.+...   +..+..++.++.....++..+...+..++.+-..++.++..+....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i---~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~  237 (880)
T PRK03918        161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENI---EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELK  237 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445566667777777777777776555443   4456778888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHhhhhHHHH
Q 046111          217 KELEVARNKIKELQRQIQLD---ANQTKGQLLLLKQQVSGLQAKEE  259 (520)
Q Consensus       217 ~ELe~ar~Kir~Lqkk~~~~---a~q~K~qi~~Lkq~V~~Lq~~Ee  259 (520)
                      .+++.++.++..+..++...   .......+..+++++..|+....
T Consensus       238 ~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~  283 (880)
T PRK03918        238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVK  283 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888877777777765543   33445556666666666655543

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.31  E-value=0.18  Score=59.99  Aligned_cols=13  Identities=38%  Similarity=0.550  Sum_probs=7.2

Q ss_pred             CCCCcccCCCCCC
Q 046111          471 SSPARSISGCSPS  483 (520)
Q Consensus       471 ~~~~~s~~~~sp~  483 (520)
                      ..|+.+.+||++.
T Consensus       646 ~~~~G~~tGG~~~  658 (1163)
T COG1196         646 VEPSGSITGGSRN  658 (1163)
T ss_pred             EeCCeeeecCCcc
Confidence            4455666666444

>TIGR00606 rad50 rad50

Probab=97.29  E-value=0.13  Score=61.91  Aligned_cols=68  Identities=16%  Similarity=0.168  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111          141 ERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQS  212 (520)
Q Consensus       141 ~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~  212 (520)
                      .++..-+..|+.+=..|+.++..|-+    ...+.+|+.++.....+++.+..++..++.+..+++.++..+
T Consensus       795 ~r~~~ei~~l~~qie~l~~~l~~~~~----~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L  862 (1311)
T TIGR00606       795 ERFQMELKDVERKIAQQAAKLQGSDL----DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL  862 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555556666665544    336778888888888888888777777777777777766666

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.27  E-value=0.11  Score=59.28  Aligned_cols=142  Identities=23%  Similarity=0.205  Sum_probs=102.9

Q ss_pred             hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046111          170 QESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQ  249 (520)
Q Consensus       170 QEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq  249 (520)
                      |.++|..|....+....=+.+++..|..|++|.++|..-+..-..+.+.+..+=.|......+.+......+..+..|..
T Consensus       472 qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~  551 (961)
T KOG4673|consen  472 QSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEA  551 (961)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            34555555554433333377888899999999999999998888888888888888888888888888888888999999


Q ss_pred             HHhhhhHHHHHHhhhhHHHHHHHh------hHHhHHHHHHHHHHHh-----------HHHHHHHHHHHHhHHHHHHHHhh
Q 046111          250 QVSGLQAKEEEAIKKDVELEKKLK------SVKDLEVEVVELKRKN-----------KELQIEKRELLVKLDAAESKIAS  312 (520)
Q Consensus       250 ~V~~Lq~~Eee~~~~d~E~EkKl~------~l~~LE~Ev~ELRr~N-----------k~LQ~EK~eL~~kL~~AE~~~~~  312 (520)
                      +...+|+.--++.. |--.+.+++      +-..|-..|.+||.+.           ..+-+|+++|-.||++||-+...
T Consensus       552 ~~~a~qat~d~a~~-Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~ee  630 (961)
T KOG4673|consen  552 QALAEQATNDEARS-DLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEE  630 (961)
T ss_pred             HHHHHHHhhhhhhh-hHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98888887654322 211222222      2335666777777554           45778999999999999976543

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=97.19  E-value=0.36  Score=56.32  Aligned_cols=102  Identities=20%  Similarity=0.268  Sum_probs=72.7

Q ss_pred             hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 046111          169 EQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLK  248 (520)
Q Consensus       169 EQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lk  248 (520)
                      |+..++..+++++..-.++...-......-.+|.++|+.++++..+.+.+++.|...+.++.++..    ....+.-.+|
T Consensus       355 ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l----~~e~ry~klk  430 (980)
T KOG0980|consen  355 EARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKAL----AAENRYEKLK  430 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHH
Confidence            445556666666666666666555555555667779999999999999999999988777776654    3455666777


Q ss_pred             HHHhhhhHHHHHHhhhhHHHHHHHhh
Q 046111          249 QQVSGLQAKEEEAIKKDVELEKKLKS  274 (520)
Q Consensus       249 q~V~~Lq~~Eee~~~~d~E~EkKl~~  274 (520)
                      ...+.|.....+.++..+++.+++..
T Consensus       431 ek~t~l~~~h~~lL~K~~di~kQle~  456 (980)
T KOG0980|consen  431 EKYTELRQEHADLLRKYDDIQKQLES  456 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777766543

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.19  E-value=0.1  Score=56.67  Aligned_cols=178  Identities=21%  Similarity=0.209  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHHHhhhcchhhhhHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046111          137 ARELERLRSLVLELQE--REVKLEGELLEYYGLKEQESDIVELQRQLK-IKTVEIDMLNITINSLQAERKKLQEQIAQSS  213 (520)
Q Consensus       137 ~~EI~~Lr~lVeeLqE--RE~~LE~eLLEy~~LKEQEa~v~ELe~~L~-~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~  213 (520)
                      .+|...|-..+-+|+|  ||+.|.+    .-.|-|.+-...|+.-.+. .+.-+++.|.+++-.|+.||.+|+..++...
T Consensus       249 kqEnlqLvhR~h~LEEq~reqElra----eE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlk  324 (502)
T KOG0982|consen  249 KQENLQLVHRYHMLEEQRREQELRA----EESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLK  324 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666665555544  2222222    1223333334444444333 4567889999999999999999999998887


Q ss_pred             hHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHh
Q 046111          214 YVKKELEVAR----NKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKN  289 (520)
Q Consensus       214 ~v~~ELe~ar----~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~N  289 (520)
                      ....+|+.-+    -.+..|.-++.-+..--+.+-..|.+    +              ++.-...+   -=++|||+..
T Consensus       325 sl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrr----f--------------q~ekeatq---ELieelrkel  383 (502)
T KOG0982|consen  325 SLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRR----F--------------QEEKEATQ---ELIEELRKEL  383 (502)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H--------------HHhhHHHH---HHHHHHHHHH
Confidence            7777665544    23333333333333333332222222    1              11111222   2367888888


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcc
Q 046111          290 KELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNR  350 (520)
Q Consensus       290 k~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR  350 (520)
                      ..||..|..++.---           ...+--+.....++.+||+-|--|..|=|.|++-=
T Consensus       384 ehlr~~kl~~a~p~r-----------grsSaRe~eleqevkrLrq~nr~l~eqneelngti  433 (502)
T KOG0982|consen  384 EHLRRRKLVLANPVR-----------GRSSAREIELEQEVKRLRQPNRILSEQNEELNGTI  433 (502)
T ss_pred             HHHHHHHHHhhcccc-----------CchhHHHHHHHHHHHHhccccchhhhhhhhhhhhh
Confidence            888888877741100           00122233356788888888888888888777643

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.10  E-value=0.055  Score=63.38  Aligned_cols=153  Identities=18%  Similarity=0.249  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 046111          143 LRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVA  222 (520)
Q Consensus       143 Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~a  222 (520)
                      |.-.+..|+.+=++|+.||-|-.      ..+..|+++|....+|++.|+..|.-+..+..|...-..+..+++..-++|
T Consensus       175 L~velAdle~kir~LrqElEEK~------enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~  248 (1195)
T KOG4643|consen  175 LEVELADLEKKIRTLRQELEEKF------ENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERP  248 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcC
Confidence            33334444445556666655544      568899999999999999999999999999999999999999998887776


Q ss_pred             HHH-------HHHHHHHHHHHHHhhH---HHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHH
Q 046111          223 RNK-------IKELQRQIQLDANQTK---GQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKEL  292 (520)
Q Consensus       223 r~K-------ir~Lqkk~~~~a~q~K---~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~L  292 (520)
                      -.+       +..++-++...-+.++   +.-.||++|+-++.++-+- +....+|-+=-+.+.+|+.+--=.|....+|
T Consensus       249 d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiqlkqkl~dm~~erdtdr~kteeL  327 (1195)
T KOG4643|consen  249 DTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQLKQKLDDMRSERDTDRHKTEEL  327 (1195)
T ss_pred             CCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            422       2223444443333322   3456778888887777643 4455555555566788888877788888888


Q ss_pred             HHHHHHHHHh
Q 046111          293 QIEKRELLVK  302 (520)
Q Consensus       293 Q~EK~eL~~k  302 (520)
                      +.||..|-+.
T Consensus       328 ~eEnstLq~q  337 (1195)
T KOG4643|consen  328 HEENSTLQVQ  337 (1195)
T ss_pred             HHHHHHHHHH
Confidence            8888877443

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.07  E-value=0.084  Score=59.21  Aligned_cols=95  Identities=20%  Similarity=0.359  Sum_probs=50.3

Q ss_pred             hhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHh---hcCCCchhHHHHHH---HHHHHhhhhhcH
Q 046111          264 KDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIA---SLSNMTESEKVAKA---REEVNNLRHAND  337 (520)
Q Consensus       264 ~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~---~lsnv~e~~~Va~a---~eE~~~LR~~NE  337 (520)
                      +..+..++++.++.|..++.++-.....-++.-..|...++..-..++   +..-  -=+||.-+   ++|+++.-.-..
T Consensus       438 ~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~R--IlEIv~NI~KQk~eI~KIl~DTr  515 (594)
T PF05667_consen  438 RESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRR--ILEIVKNIRKQKEEIEKILSDTR  515 (594)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHH
Confidence            445555666666666666555555444444444444444433221110   0000  12344333   466666655556


Q ss_pred             HHHHHHHHHh---hcccchhhHHHHH
Q 046111          338 DLLKQVEGLQ---MNRFGEVEELVYL  360 (520)
Q Consensus       338 dL~kqVEqLq---~dR~seVEELVYL  360 (520)
                      .|-|++..|.   ..=|+.++||||-
T Consensus       516 ~lQkeiN~l~gkL~RtF~v~dElifr  541 (594)
T PF05667_consen  516 ELQKEINSLTGKLDRTFTVTDELIFR  541 (594)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            6777766554   3569999999994

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.05  E-value=0.23  Score=56.80  Aligned_cols=170  Identities=22%  Similarity=0.262  Sum_probs=93.9

Q ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046111          134 ADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSS  213 (520)
Q Consensus       134 ~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~  213 (520)
                      .-++.||.+||.-+...+..|..|..++--|-.      .=..+..+|.....+.+.|..++..|....+.=...+....
T Consensus       421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~------~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LE  494 (697)
T PF09726_consen  421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTN------NERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLE  494 (697)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346889999999999999999999988764332      11244555555555566666665555443332222222222


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhH------------------HHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhH
Q 046111          214 YVKKELEVARNKIKELQRQIQLDANQTK------------------GQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSV  275 (520)
Q Consensus       214 ~v~~ELe~ar~Kir~Lqkk~~~~a~q~K------------------~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l  275 (520)
                      +=.++...+|.   .|.+++..+.++-+                  +--..++++...|+   .|.-+-..|+..|-..+
T Consensus       495 krL~eE~~~R~---~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE---~E~~~lr~elk~kee~~  568 (697)
T PF09726_consen  495 KRLAEERRQRA---SLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLE---SELKKLRRELKQKEEQI  568 (697)
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            22222222221   12222222111111                  12234555554444   33444455577777777


Q ss_pred             HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCC
Q 046111          276 KDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSN  315 (520)
Q Consensus       276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsn  315 (520)
                      ..||.++.+||..+++=+.+-..|..=|.+.|.+...|.|
T Consensus       569 ~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~  608 (697)
T PF09726_consen  569 RELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLEN  608 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888877666566666677777777766555444

; GO: 0016021 integral to membrane

>PRK02224 chromosome segregation protein; Provisional

Probab=97.02  E-value=0.35  Score=55.23  Aligned_cols=25  Identities=16%  Similarity=0.169  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111          137 ARELERLRSLVLELQEREVKLEGEL  161 (520)
Q Consensus       137 ~~EI~~Lr~lVeeLqERE~~LE~eL  161 (520)
                      ..++..|+..+..++++-..++.++
T Consensus       212 ~~~l~el~~~i~~~~~~~~~l~~~l  236 (880)
T PRK02224        212 ESELAELDEEIERYEEQREQARETR  236 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555544444444

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=97.00  E-value=0.043  Score=57.15  Aligned_cols=178  Identities=25%  Similarity=0.344  Sum_probs=93.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch----hhhhHHH-HHHHH----HhhhhhHHHHHHHHHHHHHHHHHHHH
Q 046111          136 NARELERLRSLVLELQEREVKLEGELLEYYGLK----EQESDIV-ELQRQ----LKIKTVEIDMLNITINSLQAERKKLQ  206 (520)
Q Consensus       136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LK----EQEa~v~-ELe~~----L~~k~~Ei~~L~~kI~sLEsEn~RL~  206 (520)
                      ++.++..-+..|..|+ -|..+..+||..|.=-    +.++... .+...    -.-+-..++.|..|+..||.||..|+
T Consensus       102 le~~L~~~~e~v~qLr-HeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR  180 (306)
T PF04849_consen  102 LEEQLGAALEQVEQLR-HELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLR  180 (306)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666665 3677777787777621    1111110 00000    01122457899999999999999999


Q ss_pred             HHHHhHHh---------------HHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHhhhhHHHHHHhhhhHHH
Q 046111          207 EQIAQSSY---------------VKKELEVARNKIKELQRQIQLDANQT---KGQLLLLKQQVSGLQAKEEEAIKKDVEL  268 (520)
Q Consensus       207 ~qv~e~~~---------------v~~ELe~ar~Kir~Lqkk~~~~a~q~---K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~  268 (520)
                      .++..+..               .+++|..|..+|..|..-+-...+.+   .++|..|.-+|..||.+-          
T Consensus       181 ~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~----------  250 (306)
T PF04849_consen  181 SEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRC----------  250 (306)
T ss_pred             HHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence            99888763               34566666666666665555444333   234444444444444443          


Q ss_pred             HHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhc
Q 046111          269 EKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHAN  336 (520)
Q Consensus       269 EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~N  336 (520)
                             +.+-.|.+||+.....-..--+.|+..|...+.+.+..     -.|...+++|+..||+.|
T Consensus       251 -------k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~-----~~mL~EaQEElk~lR~~~  306 (306)
T PF04849_consen  251 -------KQLAAENEELQQHLQASKESQRQLQAELQELQDKYAEC-----MAMLHEAQEELKTLRKRT  306 (306)
T ss_pred             -------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhCCC
Confidence                   22333333333333333333333333333333332111     235666788888877654

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=96.97  E-value=0.35  Score=60.65  Aligned_cols=166  Identities=27%  Similarity=0.364  Sum_probs=80.0

Q ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046111          134 ADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSS  213 (520)
Q Consensus       134 ~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~  213 (520)
                      ...+.++..+...+++.+++...|+.+.-+.      +..+.+|+..+......+..+.++...++.+++.|++++..+.
T Consensus       904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~------~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~  977 (1930)
T KOG0161|consen  904 QELEKELKELKERLEEEEEKNAELERKKRKL------EQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLD  977 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446667777777777777777777765432      2445555555555555555555555555555555555544444


Q ss_pred             hHHHHHHHHHHH----HHHHHHHHHHHHHhh---HHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHH
Q 046111          214 YVKKELEVARNK----IKELQRQIQLDANQT---KGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELK  286 (520)
Q Consensus       214 ~v~~ELe~ar~K----ir~Lqkk~~~~a~q~---K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELR  286 (520)
                      .....|-..|..    ++.|+-.++..-+++   ......|-+++..++..-+..-+.-.++++.   .++||.+...++
T Consensus       978 e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~---~rkle~el~~~~ 1054 (1930)
T KOG0161|consen  978 ENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKA---KRKLEGELKDLQ 1054 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhh
Confidence            444444444433    333333333222222   2233334444444444443333333344422   244444444444


Q ss_pred             HHhHHHHHHHHHHHHhHHHHHH
Q 046111          287 RKNKELQIEKRELLVKLDAAES  308 (520)
Q Consensus       287 r~Nk~LQ~EK~eL~~kL~~AE~  308 (520)
                      .....+..++.+|...|...+.
T Consensus      1055 e~~~~~~~~~~el~~~l~kke~ 1076 (1930)
T KOG0161|consen 1055 ESIEELKKQKEELDNQLKKKES 1076 (1930)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444443

>TIGR00606 rad50 rad50

Probab=96.91  E-value=0.37  Score=58.20  Aligned_cols=122  Identities=13%  Similarity=0.180  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHH------hHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHhhhhHHHH
Q 046111          189 DMLNITINSLQAERKKLQEQIAQSS------YVKKELEVARNKIKELQRQIQ---LDANQTKGQLLLLKQQVSGLQAKEE  259 (520)
Q Consensus       189 ~~L~~kI~sLEsEn~RL~~qv~e~~------~v~~ELe~ar~Kir~Lqkk~~---~~a~q~K~qi~~Lkq~V~~Lq~~Ee  259 (520)
                      ..+...|..++.+-..|..++..+.      .+..++.....+++.|++++.   ....+.+.+|..|+.++..+.....
T Consensus       795 ~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~kl  874 (1311)
T TIGR00606       795 ERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKL  874 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345566666666666555554332      255666666666666655443   3344445556666555555554443


Q ss_pred             HHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111          260 EAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI  310 (520)
Q Consensus       260 e~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~  310 (520)
                      .....-.....--..+.+|..++.+++...+++..+-..|..++..++...
T Consensus       875 kl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~  925 (1311)
T TIGR00606       875 QIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK  925 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            322211111111112333344444444444444444444555555555443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK11637 AmiB activator; Provisional

Probab=96.85  E-value=0.87  Score=48.45  Aligned_cols=68  Identities=16%  Similarity=0.223  Sum_probs=32.3

Q ss_pred             HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhh
Q 046111          276 KDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQM  348 (520)
Q Consensus       276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~  348 (520)
                      .+|+.+..+|.....+++.++.+|.......+..+..|..-     ......++..|+..-..|.++|+.|+.
T Consensus       187 ~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~-----~~~~~~~l~~l~~~~~~L~~~I~~l~~  254 (428)
T PRK11637        187 AELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESS-----LQKDQQQLSELRANESRLRDSIARAER  254 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555566666666666655554444333222210     111123344444444456666665543

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=96.79  E-value=0.67  Score=58.23  Aligned_cols=129  Identities=21%  Similarity=0.300  Sum_probs=86.6

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH
Q 046111          177 LQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQA  256 (520)
Q Consensus       177 Le~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~  256 (520)
                      ||..+.--...+.....++.+|-.-+.+|..++.+.....++=...|..+.-.++|+..+..-.+.++..++.++..|+.
T Consensus       990 lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~ 1069 (1930)
T KOG0161|consen  990 LEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDN 1069 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            33333334444444555555555555555555555555555555566666667777777777777777778888877765


Q ss_pred             HHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111          257 KEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAES  308 (520)
Q Consensus       257 ~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~  308 (520)
                      .   ..+...++..-...+.++...+..+.+..++||-.+.+|.-.|++-..
T Consensus      1070 ~---l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~ 1118 (1930)
T KOG0161|consen 1070 Q---LKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERA 1118 (1930)
T ss_pred             H---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5   445677777777778888888888888888888888888777775443

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.76  E-value=0.14  Score=47.62  Aligned_cols=119  Identities=24%  Similarity=0.341  Sum_probs=87.4

Q ss_pred             hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 046111          171 ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQ  250 (520)
Q Consensus       171 Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~  250 (520)
                      ++.+..|+.+...+..+|.-|..++..|+.+-..++.++.+......+-+-....+.-|+++|+..=.+           
T Consensus        20 e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEee-----------   88 (143)
T PF12718_consen   20 EAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEE-----------   88 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHH-----------
Confidence            344667777777888889999999999999999999888888888887777766666666666543221           


Q ss_pred             HhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111          251 VSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI  310 (520)
Q Consensus       251 V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~  310 (520)
                                .-..+.-+..-...++...+.+.++-|..+.|+.+...+-.|++..+.++
T Consensus        89 ----------le~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~  138 (143)
T PF12718_consen   89 ----------LEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY  138 (143)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence                      11222233444455678888889999999999998888888888776655

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.71  E-value=0.37  Score=57.14  Aligned_cols=154  Identities=25%  Similarity=0.321  Sum_probs=93.9

Q ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhhhHHHHHHHHHhhhhhHHHHHHHH-------HHHHHHHHHHH
Q 046111          134 ADNARELERLRSLVLELQEREVKLEGELLEYYG-LKEQESDIVELQRQLKIKTVEIDMLNIT-------INSLQAERKKL  205 (520)
Q Consensus       134 ~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~-LKEQEa~v~ELe~~L~~k~~Ei~~L~~k-------I~sLEsEn~RL  205 (520)
                      .+++.|+..|.+.+.+|+......+..|-++.. |++=...+..+++++..+..|+..|.-.       |..++.+-...
T Consensus       664 e~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei  743 (1074)
T KOG0250|consen  664 EDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREI  743 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHH
Confidence            344555555555555555555555555555543 2333444566677777777777776663       44444444444


Q ss_pred             HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHH--------------H
Q 046111          206 QEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEK--------------K  271 (520)
Q Consensus       206 ~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~Ek--------------K  271 (520)
                      .....++..-.+.++..+.++..++.+.+...+.=.+.-..|++....|++-+.+.-.+++.+..              .
T Consensus       744 ~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~~~HyE~~~K~~  823 (1074)
T KOG0250|consen  744 KKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSAEDEKRHYEDKLKSR  823 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHh
Confidence            44444555555555666667776666666666666777778888888888888777666555443              3


Q ss_pred             HhhHHhHHHHHHHHHH
Q 046111          272 LKSVKDLEVEVVELKR  287 (520)
Q Consensus       272 l~~l~~LE~Ev~ELRr  287 (520)
                      ++.++..|+++..+..
T Consensus       824 l~~l~~~E~~~~~~e~  839 (1074)
T KOG0250|consen  824 LEELKQKEVEKVNLEE  839 (1074)
T ss_pred             hHHHHHHHHHHHhhhc
Confidence            5556666666655544

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.69  E-value=1.5  Score=49.08  Aligned_cols=23  Identities=43%  Similarity=0.492  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 046111          139 ELERLRSLVLELQEREVKLEGEL  161 (520)
Q Consensus       139 EI~~Lr~lVeeLqERE~~LE~eL  161 (520)
                      +...|..-+..|+++=.+|+.+|
T Consensus       158 ~~~~Le~e~~~l~~~v~~l~~eL  180 (546)
T PF07888_consen  158 ENEQLEEEVEQLREEVERLEAEL  180 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.67  E-value=0.27  Score=52.94  Aligned_cols=47  Identities=17%  Similarity=0.130  Sum_probs=30.5

Q ss_pred             hhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111          264 KDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI  310 (520)
Q Consensus       264 ~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~  310 (520)
                      ....+.........|+.++.+|...+.++..+..+|..+|..+....
T Consensus       349 ~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~  395 (562)
T PHA02562        349 NKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTK  395 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence            34445555556667777777777777777777777777777665544

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.66  E-value=0.53  Score=47.71  Aligned_cols=112  Identities=24%  Similarity=0.405  Sum_probs=57.4

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH
Q 046111          177 LQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQA  256 (520)
Q Consensus       177 Le~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~  256 (520)
                      ...-|....+++..++..+..++.+...|+.++..+   ..+|..++.+++..+.++  .+-.+-.++..|...+..++ 
T Consensus        29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~---e~ei~~~r~r~~~~e~kl--~~v~~~~e~~aL~~E~~~ak-  102 (239)
T COG1579          29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQL---ESEIQEIRERIKRAEEKL--SAVKDERELRALNIEIQIAK-  102 (239)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHH-
Confidence            334444445555555555555555555555554433   345555555555555555  23333334444444444433 


Q ss_pred             HHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111          257 KEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI  310 (520)
Q Consensus       257 ~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~  310 (520)
                                      .+...|+.++.+|......|+.+.-.|..++...+..+
T Consensus       103 ----------------~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~  140 (239)
T COG1579         103 ----------------ERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL  140 (239)
T ss_pred             ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            33455555555555555555555555555555555444

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.65  E-value=1.1  Score=51.91  Aligned_cols=172  Identities=26%  Similarity=0.345  Sum_probs=119.4

Q ss_pred             hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHH
Q 046111          172 SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTK---GQLLLLK  248 (520)
Q Consensus       172 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K---~qi~~Lk  248 (520)
                      +.|-.|..+|..++..+......|..+++|..++..++.+   +...++....||+.||++|...-.+.+   .++..++
T Consensus       343 sdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~---l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k  419 (775)
T PF10174_consen  343 SDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIED---LRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEK  419 (775)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888889999999999999999999998887765   677888888999999999765555443   4566666


Q ss_pred             HHHhh---------hhHHHHHH-------------hhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 046111          249 QQVSG---------LQAKEEEA-------------IKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAA  306 (520)
Q Consensus       249 q~V~~---------Lq~~Eee~-------------~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~A  306 (520)
                      .++..         +...=+++             .+..+ -..+...+..+..++.+++..+..||-+..+....|..+
T Consensus       420 ~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~-e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~  498 (775)
T PF10174_consen  420 ERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERA-EKERQEELETYQKELKELKAKLESLQKELSEKELQLEDA  498 (775)
T ss_pred             HHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence            66661         10000000             00111 123455677788899999999999999999999999988


Q ss_pred             HHHHhhcCCCc-h-hHHHHHHHHHHHhhhhhcHHHHHHHHHHh
Q 046111          307 ESKIASLSNMT-E-SEKVAKAREEVNNLRHANDDLLKQVEGLQ  347 (520)
Q Consensus       307 E~~~~~lsnv~-e-~~~Va~a~eE~~~LR~~NEdL~kqVEqLq  347 (520)
                      ...++.+...- . ...+..+.=++...|..-++|.+|++.++
T Consensus       499 kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~  541 (775)
T PF10174_consen  499 KEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLR  541 (775)
T ss_pred             hhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            87776543322 1 12344555566666777777888888755

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK01156 chromosome segregation protein; Provisional

Probab=96.58  E-value=2.1  Score=49.32  Aligned_cols=88  Identities=10%  Similarity=0.137  Sum_probs=41.5

Q ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111          133 MADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQS  212 (520)
Q Consensus       133 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~  212 (520)
                      ...+..+|..|..-+++|.++...|+.++-++-.+.+...  ..--++|..+..++..+..++..+..+-..|.+....|
T Consensus       471 i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~l~--~~~~~~l~~~~~~~~~l~~~l~~~~~~l~~le~~~~~~  548 (895)
T PRK01156        471 INHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLE--SEEINKSINEYNKIESARADLEDIKIKINELKDKHDKY  548 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667777777777777666666665554222211100  01111223333344444444444444444455555555


Q ss_pred             HhHHHHHHHH
Q 046111          213 SYVKKELEVA  222 (520)
Q Consensus       213 ~~v~~ELe~a  222 (520)
                      ..+.+++...
T Consensus       549 ~~l~~~~~~~  558 (895)
T PRK01156        549 EEIKNRYKSL  558 (895)
T ss_pred             HHHHHHHHHh
Confidence            5555544443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.58  E-value=0.71  Score=46.82  Aligned_cols=28  Identities=43%  Similarity=0.606  Sum_probs=14.4

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111          277 DLEVEVVELKRKNKELQIEKRELLVKLD  304 (520)
Q Consensus       277 ~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~  304 (520)
                      .++.+|.+++..-..+..+..+|+-+|+
T Consensus       146 ~~e~e~~~i~e~~~~~~~~~~~L~~~l~  173 (239)
T COG1579         146 RLEEEVAEIREEGQELSSKREELKEKLD  173 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3455555555555555555555544433

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.53  E-value=1.7  Score=48.66  Aligned_cols=68  Identities=24%  Similarity=0.403  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 046111          172 SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKG  242 (520)
Q Consensus       172 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~  242 (520)
                      ..+..|+..|.....+.+.|..+...+...++.|..   +...+..+++.++.+|+.|...+.....+.++
T Consensus       171 ~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~---E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E  238 (546)
T PF07888_consen  171 EEVERLEAELEQEEEEMEQLKQQQKELTESSEELKE---ERESLKEQLAEARQRIRELEEDIKTLTQKEKE  238 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777777777777777777777766666554   33455666777777887777777666555533

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.42  E-value=0.0064  Score=68.50  Aligned_cols=212  Identities=23%  Similarity=0.318  Sum_probs=51.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 046111          136 NARELERLRSLVLELQEREVKLEGELLEYY-GLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSY  214 (520)
Q Consensus       136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~-~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~  214 (520)
                      ...++..|...+..|+..-..+..++.+|. .++.....+..||+++.+-.-|++.|+.-+.++..|.......-. ...
T Consensus       362 ~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~-~~~  440 (722)
T PF05557_consen  362 LQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQ-DTQ  440 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchh-HHH
Confidence            456777777777777766666666666553 345566678889999999999999999888888887765543210 001


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHH-----HHhhHHhHHHHHHHHHHHh
Q 046111          215 VKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEK-----KLKSVKDLEVEVVELKRKN  289 (520)
Q Consensus       215 v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~Ek-----Kl~~l~~LE~Ev~ELRr~N  289 (520)
                      -..+++..-..+......+.....+....+...++....+.. +....+.......     -...+..|..++.+|++.+
T Consensus       441 ~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~-e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~  519 (722)
T PF05557_consen  441 RIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEA-ELKSLKEQLSSNDRSLSSLSEELNELQKEIEELEREN  519 (722)
T ss_dssp             ------------------------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhh-hhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Confidence            111111111111111111111112222222222222211111 1010000000000     1123455777777777777


Q ss_pred             HHHHHHHHHHHHhHHH---------HHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhc
Q 046111          290 KELQIEKRELLVKLDA---------AESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMN  349 (520)
Q Consensus       290 k~LQ~EK~eL~~kL~~---------AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~d  349 (520)
                      ..|+.++..|..+|..         ...+|-.+.+-|-.+.....+..+..||.+|++|..+|..|..+
T Consensus       520 ~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~  588 (722)
T PF05557_consen  520 ERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEG  588 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            7777777777777764         11233333444444444445799999999999999999766544

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PRK01156 chromosome segregation protein; Provisional

Probab=96.40  E-value=2.7  Score=48.47  Aligned_cols=58  Identities=12%  Similarity=0.096  Sum_probs=26.0

Q ss_pred             hhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhcchhhhhHHHHHHHHHhhhh
Q 046111          128 VYETEMADNARELERLRSLVLELQEREVKLEGELLE-----YYGLKEQESDIVELQRQLKIKT  185 (520)
Q Consensus       128 ~~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLE-----y~~LKEQEa~v~ELe~~L~~k~  185 (520)
                      .|......+..+|..|.+-++.+...-..++..+-.     +..|++....+.+++..|..-.
T Consensus       473 ~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~l~~~l~~~~  535 (895)
T PRK01156        473 HYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIK  535 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555556555555555444443333333222     3334444444444444443333

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=96.39  E-value=1.3  Score=51.78  Aligned_cols=66  Identities=24%  Similarity=0.305  Sum_probs=48.0

Q ss_pred             hhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------cchh-------hhhHHHHHHHHHhhhhhHHH
Q 046111          125 KNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYY--------GLKE-------QESDIVELQRQLKIKTVEID  189 (520)
Q Consensus       125 ~~~~~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~--------~LKE-------QEa~v~ELe~~L~~k~~Ei~  189 (520)
                      ..+.|-...--++..+.++.+.+..||-+=.+||+|+--+-        .|||       ..+.+-+|+..|.+++.+|-
T Consensus        86 etriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf  165 (1265)
T KOG0976|consen   86 ETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIF  165 (1265)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH
Confidence            35667666666788899999999999999999988876542        2333       34556677888888877775


Q ss_pred             H
Q 046111          190 M  190 (520)
Q Consensus       190 ~  190 (520)
                      +
T Consensus       166 ~  166 (1265)
T KOG0976|consen  166 M  166 (1265)
T ss_pred             H
Confidence            5

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.36  E-value=1.6  Score=45.32  Aligned_cols=58  Identities=34%  Similarity=0.393  Sum_probs=31.5

Q ss_pred             hHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHH
Q 046111          265 DVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKV  322 (520)
Q Consensus       265 d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~V  322 (520)
                      +.+++.+-+.+.+|+.++.+++.....+..++.++...+..|+.........|..++.
T Consensus       222 ~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~  279 (325)
T PF08317_consen  222 KEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVK  279 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            3334444445555666666666666666666666655555555544444555544433

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.13  E-value=2.8  Score=52.01  Aligned_cols=163  Identities=13%  Similarity=0.118  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Q 046111          138 RELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKK  217 (520)
Q Consensus       138 ~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~  217 (520)
                      .-+.++...+.+|..+...|+.+.-.+..-++....+..+...+......++.|...+...+.....++.++   ..+..
T Consensus       307 ~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeel---eelee  383 (1486)
T PRK04863        307 YRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQ---EENEA  383 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence            446667777778888888887776555443333332222333333333333334333333333333332222   23334


Q ss_pred             HHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHhhhhHHHHHH---hhhhHHHHHHHhhHHhHHHHHHHHHHHhHH
Q 046111          218 ELEVARNKIKELQRQIQ---LDANQTKGQLLLLKQQVSGLQAKEEEA---IKKDVELEKKLKSVKDLEVEVVELKRKNKE  291 (520)
Q Consensus       218 ELe~ar~Kir~Lqkk~~---~~a~q~K~qi~~Lkq~V~~Lq~~Eee~---~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~  291 (520)
                      +++.+..++..|+.++.   ........++..+++.+..++.-+.=-   .-.+.+++.   .+..++..+.+++....+
T Consensus       384 EleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~---~LenF~aklee~e~qL~e  460 (1486)
T PRK04863        384 RAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAED---WLEEFQAKEQEATEELLS  460 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence            44444455555544433   334444455555555555554443211   001223332   234444444444444444


Q ss_pred             HHHHHHHHHHhHHHH
Q 046111          292 LQIEKRELLVKLDAA  306 (520)
Q Consensus       292 LQ~EK~eL~~kL~~A  306 (520)
                      |+.+...+...++.-
T Consensus       461 lE~kL~~lea~leql  475 (1486)
T PRK04863        461 LEQKLSVAQAAHSQF  475 (1486)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.12  E-value=3.8  Score=50.91  Aligned_cols=82  Identities=21%  Similarity=0.204  Sum_probs=46.8

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH----------HHHHHHHHHHHHhhHHHHHH
Q 046111          177 LQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKI----------KELQRQIQLDANQTKGQLLL  246 (520)
Q Consensus       177 Le~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Ki----------r~Lqkk~~~~a~q~K~qi~~  246 (520)
                      +++++.....++..+..++..++.+...++.++..+...+..++.|+.=|          ......+.....+...++..
T Consensus       381 leeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~e  460 (1486)
T PRK04863        381 NEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLS  460 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555555555556666666667777777777777777444          33344444555555556666


Q ss_pred             HHHHHhhhhHHH
Q 046111          247 LKQQVSGLQAKE  258 (520)
Q Consensus       247 Lkq~V~~Lq~~E  258 (520)
                      ++++...+++.-
T Consensus       461 lE~kL~~lea~l  472 (1486)
T PRK04863        461 LEQKLSVAQAAH  472 (1486)
T ss_pred             HHHHHHHHHHHH
Confidence            666655555443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=96.10  E-value=0.74  Score=51.49  Aligned_cols=117  Identities=21%  Similarity=0.307  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhH------------HHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHhhh
Q 046111          190 MLNITINSLQAERKKLQEQIAQSSYV------------KKELEVARNKIKEL---QRQIQLDANQTKGQLLLLKQQVSGL  254 (520)
Q Consensus       190 ~L~~kI~sLEsEn~RL~~qv~e~~~v------------~~ELe~ar~Kir~L---qkk~~~~a~q~K~qi~~Lkq~V~~L  254 (520)
                      .+-.+|-.||+||.+|+.++.....+            -.||..||.-++.-   +.+++.+..+.+.++..|+.++...
T Consensus        53 ~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~  132 (546)
T KOG0977|consen   53 VYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA  132 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            34445556666666666555443322            13444444444333   2233444444444444455444443


Q ss_pred             hHHH-----------HHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 046111          255 QAKE-----------EEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAA  306 (520)
Q Consensus       255 q~~E-----------ee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~A  306 (520)
                      +..-           --+..-.+++..-.-+++.||.++..|++-|.+|..+...+-..|+.+
T Consensus       133 ~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E  195 (546)
T KOG0977|consen  133 EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDE  195 (546)
T ss_pred             HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            2111           001112333444445577888888888888888887777776666543

>PRK09039 hypothetical protein; Validated

Probab=96.06  E-value=0.41  Score=50.24  Aligned_cols=102  Identities=23%  Similarity=0.319  Sum_probs=54.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHhhhhHHHHHH
Q 046111          185 TVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQ---LDANQTKGQLLLLKQQVSGLQAKEEEA  261 (520)
Q Consensus       185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~---~~a~q~K~qi~~Lkq~V~~Lq~~Eee~  261 (520)
                      ..+|..+...+..+++++.+|+.+.+.....   ...+..+...|++++.   .....+..++..|+++++.|+++    
T Consensus        80 ~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~---~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q----  152 (343)
T PRK09039         80 QDSVANLRASLSAAEAERSRLQALLAELAGA---GAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ----  152 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----
Confidence            3445555555556666666666655532211   1122233333333332   33344455566666666666655    


Q ss_pred             hhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 046111          262 IKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAA  306 (520)
Q Consensus       262 ~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~A  306 (520)
                                   +..|+.++.+.....++.|.+..+|-.+|+.|
T Consensus       153 -------------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        153 -------------LAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         45566666666666666666666666666655

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.06  E-value=0.0016  Score=73.24  Aligned_cols=230  Identities=22%  Similarity=0.259  Sum_probs=0.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cchhhhhHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHHH
Q 046111          136 NARELERLRSLVLELQEREVKLEGELLEYY----GLKEQESDIVELQRQLKIKTVEI------DMLNITINSLQAERKKL  205 (520)
Q Consensus       136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~----~LKEQEa~v~ELe~~L~~k~~Ei------~~L~~kI~sLEsEn~RL  205 (520)
                      +..++..|+..+..++.+-...+.++-++.    .+.+.+..+.+|+.+|.......      ...-..|..||.+|.+|
T Consensus       190 l~~e~~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l  269 (722)
T PF05557_consen  190 LESELEELKEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRL  269 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555544433333333331    23344666666766555433322      12234678899999999


Q ss_pred             HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHH
Q 046111          206 QEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVEL  285 (520)
Q Consensus       206 ~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~EL  285 (520)
                      .+++..+....+-.+.++.+++-|++|+... +...+++..|+=++..|+.+-..-..-....--....-.+|-..+..|
T Consensus       270 ~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~-E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~l  348 (722)
T PF05557_consen  270 REELKHLRQSQENVELLEEEKRSLQRKLERL-EELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQL  348 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999998864 455556666655555555543221111100000111222333334444


Q ss_pred             HHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 046111          286 KRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVNA  365 (520)
Q Consensus       286 Rr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~seVEELVYLRWVNA  365 (520)
                      |..+.-|..+++.+...+...+..+   ..+  ..-.+.+..++..++.....+.+.+..|+.-+.--+.|.=|||=+=.
T Consensus       349 q~~~~~L~ek~g~~~~~~~~l~~~~---~~L--e~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~  423 (722)
T PF05557_consen  349 QQENASLTEKLGSLQSELRELEEEI---QEL--EQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLK  423 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHH---HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444333222222211   111  11223344556666666666777778888888888888888876555


Q ss_pred             HHHHHH
Q 046111          366 CLRYEL  371 (520)
Q Consensus       366 CLR~EL  371 (520)
                      +.--|.
T Consensus       424 syd~e~  429 (722)
T PF05557_consen  424 SYDKEE  429 (722)
T ss_dssp             ------
T ss_pred             Hhhhhh
Confidence            544444

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=95.93  E-value=2.3  Score=48.22  Aligned_cols=134  Identities=25%  Similarity=0.261  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHH-HHHHHHH-----HHHHHHHHHhHHhHHHHHH
Q 046111          147 VLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNIT-INSLQAE-----RKKLQEQIAQSSYVKKELE  220 (520)
Q Consensus       147 VeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~k-I~sLEsE-----n~RL~~qv~e~~~v~~ELe  220 (520)
                      +.+.++--..|+--.-+|-++|.|+..|.-|+..+..-....+..-.. +...+..     +++...-..+-..+.++++
T Consensus       120 ~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~  199 (629)
T KOG0963|consen  120 SEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLE  199 (629)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444444566777888888888888877655554443332 2222222     2223333333444445555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHH
Q 046111          221 VARNKIKELQRQIQLDANQTKGQLLLLKQQ----VSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKR  287 (520)
Q Consensus       221 ~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~----V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr  287 (520)
                      .+..+|..||+.+.    .+..++..++..    |+.   +-.++.--..+++.--+++-.||-|+..||-
T Consensus       200 ~le~ki~~lq~a~~----~t~~el~~~~s~~dee~~~---k~aev~lim~eLe~aq~ri~~lE~e~e~L~~  263 (629)
T KOG0963|consen  200 ELEKKISSLQSAIE----DTQNELFDLKSKYDEEVAA---KAAEVSLIMTELEDAQQRIVFLEREVEQLRE  263 (629)
T ss_pred             HHHHHHHHHHHHHH----hhhhHHHHHHHhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555544443    344455555555    444   2233444555677777888888888888875

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=95.92  E-value=2.4  Score=48.82  Aligned_cols=166  Identities=21%  Similarity=0.270  Sum_probs=83.8

Q ss_pred             hhhhhhccHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhcchhh-hhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 046111          129 YETEMADNARELERLRSLVLELQER-------EVKLEGELLEYYGLKEQ-ESDIVELQRQLKIKTVEIDMLNITINSLQA  200 (520)
Q Consensus       129 ~~~~~~~~~~EI~~Lr~lVeeLqER-------E~~LE~eLLEy~~LKEQ-Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEs  200 (520)
                      -+.+...+..||...|..=.+|+-+       |..|..+|-....=-|| +..+..|.+....-...+..|.+++...+.
T Consensus       423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~  502 (697)
T PF09726_consen  423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERR  502 (697)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666655555555555       55555555444331111 223444555555555556667777777777


Q ss_pred             HHHHHHHHHHhHHhHHHHHH--HHHH---------H----HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 046111          201 ERKKLQEQIAQSSYVKKELE--VARN---------K----IKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKD  265 (520)
Q Consensus       201 En~RL~~qv~e~~~v~~ELe--~ar~---------K----ir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d  265 (520)
                      ....|++|+.+-.+.+.+-+  +||.         .    +|.=.+++..+..+-+.++....+++..|+..-.+....+
T Consensus       503 ~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~  582 (697)
T PF09726_consen  503 QRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE  582 (697)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777666655432  2222         1    3333344444444444444444444433333322111100


Q ss_pred             HHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111          266 VELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLD  304 (520)
Q Consensus       266 ~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~  304 (520)
                                ++-+.+++.|--+..-+|+.+..|-.-|.
T Consensus       583 ----------~e~~~~~e~L~~aL~amqdk~~~LE~sLs  611 (697)
T PF09726_consen  583 ----------KESEKDTEVLMSALSAMQDKNQHLENSLS  611 (697)
T ss_pred             ----------hhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence                      22244555566666666666666666665

; GO: 0016021 integral to membrane

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=95.89  E-value=4.9  Score=48.23  Aligned_cols=121  Identities=23%  Similarity=0.366  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHH----------HHHHHHHhhHHHHHHHHHHHhhhhHHH-HHHhhhhHHHHHHHhhHHhHHHHHH
Q 046111          215 VKKELEVARNKIKELQR----------QIQLDANQTKGQLLLLKQQVSGLQAKE-EEAIKKDVELEKKLKSVKDLEVEVV  283 (520)
Q Consensus       215 v~~ELe~ar~Kir~Lqk----------k~~~~a~q~K~qi~~Lkq~V~~Lq~~E-ee~~~~d~E~EkKl~~l~~LE~Ev~  283 (520)
                      -.+|++.||+-++.+.+          ......++.|.....+..+|..+++.. .+.   ..++.+.-+.++.|+.+|+
T Consensus       335 ~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~---~~~~~e~e~k~~~L~~eve  411 (1074)
T KOG0250|consen  335 QDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNEL---GSELEERENKLEQLKKEVE  411 (1074)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHH
Confidence            34556666655555555          344455555666666666666666655 222   2223333344456666776


Q ss_pred             HHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcc
Q 046111          284 ELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNR  350 (520)
Q Consensus       284 ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR  350 (520)
                      .|+-.+..|-.+-.++..++-.-+.            -...++.+...||+.=+.-+.++..|.+.-
T Consensus       412 k~e~~~~~L~~e~~~~~~~~~~~~e------------e~~~i~~~i~~l~k~i~~~~~~l~~lk~~k  466 (1074)
T KOG0250|consen  412 KLEEQINSLREELNEVKEKAKEEEE------------EKEHIEGEILQLRKKIENISEELKDLKKTK  466 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            6666666666666666554442221            112245667778887777777777775543

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.82  E-value=2.2  Score=42.23  Aligned_cols=117  Identities=21%  Similarity=0.280  Sum_probs=79.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHH----hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHhhhhHH
Q 046111          185 TVEIDMLNITINSLQAERKKLQEQIAQSS----YVKKELEVARNKIKELQRQIQLDANQTK---GQLLLLKQQVSGLQAK  257 (520)
Q Consensus       185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~----~v~~ELe~ar~Kir~Lqkk~~~~a~q~K---~qi~~Lkq~V~~Lq~~  257 (520)
                      ..|++.|+--+.+||+++.+|.++..+.-    .+.++++....++..|+........+++   .....|+-||..++.-
T Consensus        66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l  145 (193)
T PF14662_consen   66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESL  145 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            56777777777788888887777765443    3444444444443333332222222221   2445667777665444


Q ss_pred             HHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111          258 EEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLD  304 (520)
Q Consensus       258 Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~  304 (520)
                         +..+++.+..+.+.+.+|..=|+|.|.++-+|-.|++.|-..|.
T Consensus       146 ---~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~  189 (193)
T PF14662_consen  146 ---ICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLS  189 (193)
T ss_pred             ---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               55688999999999999999999999999999999999976664

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.79  E-value=0.37  Score=49.83  Aligned_cols=114  Identities=26%  Similarity=0.353  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh-----hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 046111          140 LERLRSLVLELQEREVKLEGELLEYYGLKEQE-----SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSY  214 (520)
Q Consensus       140 I~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQE-----a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~  214 (520)
                      +..|..++..|.+|-..|+.++-....+...-     ..+..|..+|.....+|..++.++..|+.+...+...+.+   
T Consensus       172 ~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~---  248 (325)
T PF08317_consen  172 LEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEE---  248 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            44444444444444444444444333332211     1234444444444444444444444444444444444322   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH
Q 046111          215 VKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQA  256 (520)
Q Consensus       215 v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~  256 (520)
                      +.++.......|..+++.+......+..++..||.++..||.
T Consensus       249 ~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~  290 (325)
T PF08317_consen  249 LEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEK  290 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            223333444445555555554444555555555555554443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=95.79  E-value=3.8  Score=44.76  Aligned_cols=83  Identities=27%  Similarity=0.334  Sum_probs=69.1

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHH
Q 046111          135 DNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQI-AQSS  213 (520)
Q Consensus       135 ~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv-~e~~  213 (520)
                      ....||..+...+..-+.+-..|+.+      ||+++..+..++.+|..-...++.++..|..+......|+.|- .+-.
T Consensus        42 q~q~ei~~~~~~i~~~~~~~~kL~~~------lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~  115 (420)
T COG4942          42 QIQKEIAALEKKIREQQDQRAKLEKQ------LKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRR  115 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            35788999999999999999999887      5778999999999999999999999999999999999999776 4555


Q ss_pred             hHHHHHHHHH
Q 046111          214 YVKKELEVAR  223 (520)
Q Consensus       214 ~v~~ELe~ar  223 (520)
                      .+.+.|.++.
T Consensus       116 ~La~~L~A~~  125 (420)
T COG4942         116 RLAEQLAALQ  125 (420)
T ss_pred             HHHHHHHHHH
Confidence            5555555554

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=95.76  E-value=0.0026  Score=71.57  Aligned_cols=227  Identities=26%  Similarity=0.319  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHH---HHHHH
Q 046111          137 ARELERLRSLVLELQEREVKLEGELLEYY-GLKEQESDIVELQRQLK---IKTVEIDMLNITINSLQAERKK---LQEQI  209 (520)
Q Consensus       137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~-~LKEQEa~v~ELe~~L~---~k~~Ei~~L~~kI~sLEsEn~R---L~~qv  209 (520)
                      ..++..|+..++.|++.-.+++..+.+|. .+.+.+..+.+|+.+..   ..+.++..|+..+..|.....|   |+..|
T Consensus       238 ~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~v  317 (713)
T PF05622_consen  238 SVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEV  317 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            34556666677777666666666666664 22344555655655432   3344555555555555444333   44455


Q ss_pred             HhHHhHHHHHHHHHHHHHHHHHHHHH-------------HHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHH
Q 046111          210 AQSSYVKKELEVARNKIKELQRQIQL-------------DANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVK  276 (520)
Q Consensus       210 ~e~~~v~~ELe~ar~Kir~Lqkk~~~-------------~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~  276 (520)
                      .-|.+=.++++..|.+++.|+-+...             -+...+.++..++++|..|+.+-.+...+.          .
T Consensus       318 e~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~----------~  387 (713)
T PF05622_consen  318 EKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRA----------D  387 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Confidence            55555555555555555555443321             233346778888888887776654433222          2


Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHhHH----------HHHHH---H--------hhcCCCchhHH-HHHHHHHHHhhhh
Q 046111          277 DLEVEVVELKRKNKELQIEKRELLVKLD----------AAESK---I--------ASLSNMTESEK-VAKAREEVNNLRH  334 (520)
Q Consensus       277 ~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~----------~AE~~---~--------~~lsnv~e~~~-Va~a~eE~~~LR~  334 (520)
                      .|+.+...|+..+..|+.++..|....+          .++..   .        ....++. .++ -..+++.+-+|.+
T Consensus       388 ~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~~~~~~~~~l~~~~~~~~~~~~~l~-~El~~~~l~erl~rLe~  466 (713)
T PF05622_consen  388 KLEFENKQLEEKLEALEEEKERLQEERDSLRETNEELECSQAQQEQLSQSGEESSSSGDNLS-AELNPAELRERLLRLEH  466 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccchh-hhccchHHHHHHHHHHH
Confidence            3333444444444444444333322111          11111   0        0011111 122 2345678889999


Q ss_pred             hcHHHHHHHHHHhhcccchhh-HHHHHHHHHHHHHHHHhhc
Q 046111          335 ANDDLLKQVEGLQMNRFGEVE-ELVYLRWVNACLRYELRNY  374 (520)
Q Consensus       335 ~NEdL~kqVEqLq~dR~seVE-ELVYLRWVNACLR~ELrn~  374 (520)
                      +|..|...++++...++..+. +|-=....+.+|.-+.+..
T Consensus       467 ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~  507 (713)
T PF05622_consen  467 ENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREA  507 (713)
T ss_dssp             -----------------------------------------
T ss_pred             HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999888988877876653 3334455666777666544

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=95.76  E-value=5.9  Score=47.92  Aligned_cols=76  Identities=24%  Similarity=0.393  Sum_probs=43.6

Q ss_pred             hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 046111          129 YETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQ  208 (520)
Q Consensus       129 ~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~q  208 (520)
                      |......+..++..+...+..++.+...++.+|-.+      ...+..+..++.....++.-...++..|..+...++.+
T Consensus       598 ~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  671 (1201)
T PF12128_consen  598 YAASEEELRERLEQAEDQLQSAEERQEELEKQLKQI------NKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQE  671 (1201)
T ss_pred             hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            444445566777777777777777766666655432      23455555555555555555555555555555555544


Q ss_pred             HH
Q 046111          209 IA  210 (520)
Q Consensus       209 v~  210 (520)
                      +.
T Consensus       672 ~~  673 (1201)
T PF12128_consen  672 IE  673 (1201)
T ss_pred             HH
Confidence            43

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.67  E-value=2.8  Score=42.26  Aligned_cols=114  Identities=23%  Similarity=0.346  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHH-HHHHhhhhHH----HHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHH
Q 046111          224 NKIKELQRQIQLDANQTKGQLLLL-KQQVSGLQAK----EEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRE  298 (520)
Q Consensus       224 ~Kir~Lqkk~~~~a~q~K~qi~~L-kq~V~~Lq~~----Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~e  298 (520)
                      ..++.++.+....+.+++.++... +.++..++..    ......-..|+-.-...+..|..++.-|+..|..|+....+
T Consensus       169 ~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~  248 (312)
T PF00038_consen  169 AALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRE  248 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHH
Confidence            345556666666666666543322 2223333221    11222223334444445677777777777777777777777


Q ss_pred             HHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHH
Q 046111          299 LLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEG  345 (520)
Q Consensus       299 L~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEq  345 (520)
                      |-.++...-...        ...+...+.++..+|..-.....+.+.
T Consensus       249 le~~~~~~~~~~--------~~~i~~le~el~~l~~~~~~~~~ey~~  287 (312)
T PF00038_consen  249 LEQRLDEEREEY--------QAEIAELEEELAELREEMARQLREYQE  287 (312)
T ss_dssp             HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--------HHhhhccchhHHHHHHHHHHHHHHHHH
Confidence            766665433222        234444455555555544444444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=95.66  E-value=2.2  Score=45.09  Aligned_cols=128  Identities=23%  Similarity=0.250  Sum_probs=89.6

Q ss_pred             hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------cchhhhh---HHHHHHHHHhhhhhHHHHHHHHH
Q 046111          131 TEMADNARELERLRSLVLELQEREVKLEGELLEYY------------GLKEQES---DIVELQRQLKIKTVEIDMLNITI  195 (520)
Q Consensus       131 ~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~------------~LKEQEa---~v~ELe~~L~~k~~Ei~~L~~kI  195 (520)
                      .+.+....|-+.++.|++.|++|=..|+...-++-            -.+++.+   .+.+...+-..-..|++.|..++
T Consensus        16 ~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl   95 (319)
T PF09789_consen   16 QELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKL   95 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455678999999999999999888888665443            1123222   23445555556667777888888


Q ss_pred             HHHHHHHHHHHHHHHh----------------HHhHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHhhhhH
Q 046111          196 NSLQAERKKLQEQIAQ----------------SSYVKKELEVARNKIKELQRQIQLD---ANQTKGQLLLLKQQVSGLQA  256 (520)
Q Consensus       196 ~sLEsEn~RL~~qv~e----------------~~~v~~ELe~ar~Kir~Lqkk~~~~---a~q~K~qi~~Lkq~V~~Lq~  256 (520)
                      ..++.+++-|+..++.                ...++.+||.++.++..|++-++..   -+....+-...+++|..|..
T Consensus        96 ~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~  175 (319)
T PF09789_consen   96 NEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNH  175 (319)
T ss_pred             HHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888887777776654                5678889999999999999988853   34555666667777777644


Q ss_pred             HH
Q 046111          257 KE  258 (520)
Q Consensus       257 ~E  258 (520)
                      .=
T Consensus       176 EL  177 (319)
T PF09789_consen  176 EL  177 (319)
T ss_pred             HH
Confidence            43

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.65  E-value=0.42  Score=49.79  Aligned_cols=116  Identities=24%  Similarity=0.309  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh-----hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111          138 RELERLRSLVLELQEREVKLEGELLEYYGLKEQ-----ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQS  212 (520)
Q Consensus       138 ~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQ-----Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~  212 (520)
                      ..+..|-.++-.|.++-..|+.++-....+.+.     ...+..++..|+.-..+|.....++..++.+...+...+.+ 
T Consensus       165 ~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~-  243 (312)
T smart00787      165 KELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIED-  243 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            445555566666666666666666555554444     22345555566666666666666666666555555554443 


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH
Q 046111          213 SYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQA  256 (520)
Q Consensus       213 ~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~  256 (520)
                        ...+....+..|..+++.+......+..++..|+.++..||.
T Consensus       244 --~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~  285 (312)
T smart00787      244 --LTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS  285 (312)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence              334444555566666666666666666666666666666554

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=95.65  E-value=1.6  Score=43.52  Aligned_cols=79  Identities=23%  Similarity=0.337  Sum_probs=68.6

Q ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111          134 ADNARELERLRSLVLELQEREVKLEGELLEYYG-LKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQS  212 (520)
Q Consensus       134 ~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~-LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~  212 (520)
                      .--..||-.||..+++++-.-...+.++.+..+ +......+...+++|..+..++..|+.+|..|+.|...|+..++..
T Consensus        27 ~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~  106 (202)
T PF06818_consen   27 NQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA  106 (202)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence            334689999999999998888888888887775 5666667888999999999999999999999999999999988886

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PLN03188 kinesin-12 family protein; Provisional

Probab=95.56  E-value=3.6  Score=50.11  Aligned_cols=66  Identities=29%  Similarity=0.393  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHH----------HHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhh
Q 046111          279 EVEVVELKRKNKELQIEKRE----------LLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQM  348 (520)
Q Consensus       279 E~Ev~ELRr~Nk~LQ~EK~e----------L~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~  348 (520)
                      |.|..=||.-|+.||.|.|+          |.|||-.||..            +.-|++-+...-++|+.+-||||.|+.
T Consensus      1172 eker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea------------~~~a~~r~~~~eqe~~~~~k~~~klkr 1239 (1320)
T PLN03188       1172 EKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEA------------LTVAQKRAMDAEQEAAEAYKQIDKLKR 1239 (1320)
T ss_pred             HHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666677779999999875          55666655532            233566677777889999999999999


Q ss_pred             cccchhhH
Q 046111          349 NRFGEVEE  356 (520)
Q Consensus       349 dR~seVEE  356 (520)
                      .+-.++.=
T Consensus      1240 kh~~e~~t 1247 (1320)
T PLN03188       1240 KHENEIST 1247 (1320)
T ss_pred             HHHHHHHH
Confidence            98666543

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=95.50  E-value=0.66  Score=42.49  Aligned_cols=78  Identities=26%  Similarity=0.334  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046111          172 SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQ  249 (520)
Q Consensus       172 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq  249 (520)
                      ..|-.|..+|.....|+..+...+..|+.+...+.+++.....-..++......+..|+.+++..-.+--.=+-+|.+
T Consensus        16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE   93 (120)
T PF12325_consen   16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE   93 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            456678888888899999999999999999999999999998888888887777777777776555544444444433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.49  E-value=4.5  Score=44.76  Aligned_cols=158  Identities=20%  Similarity=0.274  Sum_probs=111.0

Q ss_pred             hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-------------HHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111          172 SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQ-------------IAQSSYVKKELEVARNKIKELQRQIQLDAN  238 (520)
Q Consensus       172 a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~q-------------v~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~  238 (520)
                      ..|.+||..|.+.+.||..-..--..|.++.++|-..             +.-..+...++-..-..-++||+++....+
T Consensus       345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se  424 (521)
T KOG1937|consen  345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESE  424 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5688999999999999986555556666666655443             333344444455555666778888887777


Q ss_pred             hhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHH---HHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCC
Q 046111          239 QTKGQLLLLKQQVSGLQAKEEEAIKKDVELEK---KLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSN  315 (520)
Q Consensus       239 q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~Ek---Kl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsn  315 (520)
                      +--.......+.|-.       .++.|+...+   =+.+|..-=.++.|+=+.+-.+-.|-++|-.++..-+.+. .+.+
T Consensus       425 ~L~Rsfavtdellf~-------sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~-~l~s  496 (521)
T KOG1937|consen  425 ALNRSFAVTDELLFM-------SAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQ-YLKS  496 (521)
T ss_pred             HHhhhHHHHHHHHHH-------HhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHH-HHhh
Confidence            777777777666543       2344444443   3455666667999999999999999999999998765433 2233


Q ss_pred             CchhHHHHHHHHHHHhhhhhcHHHHHHH
Q 046111          316 MTESEKVAKAREEVNNLRHANDDLLKQV  343 (520)
Q Consensus       316 v~e~~~Va~a~eE~~~LR~~NEdL~kqV  343 (520)
                      .      .++.+++..+|+.|+.|.++|
T Consensus       497 l------Ekl~~Dyqairqen~~L~~~i  518 (521)
T KOG1937|consen  497 L------EKLHQDYQAIRQENDQLFSEI  518 (521)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHH
Confidence            2      456789999999999999887

>PRK11637 AmiB activator; Provisional

Probab=95.41  E-value=4.6  Score=43.10  Aligned_cols=77  Identities=22%  Similarity=0.260  Sum_probs=38.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 046111          136 NARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYV  215 (520)
Q Consensus       136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v  215 (520)
                      +..+|..+...+..++.....++.++-.+      +..+..++.+|.....+|..++.+|..++.+...+++++......
T Consensus        52 l~~qi~~~~~~i~~~~~~~~~~~~~l~~l------~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~  125 (428)
T PRK11637         52 IQQDIAAKEKSVRQQQQQRASLLAQLKKQ------EEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL  125 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555655555554332      333444444444444455555555555555555554444444444


Q ss_pred             HHH
Q 046111          216 KKE  218 (520)
Q Consensus       216 ~~E  218 (520)
                      .+.
T Consensus       126 l~~  128 (428)
T PRK11637        126 LAA  128 (428)
T ss_pred             HHH
Confidence            433

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.29  E-value=3.2  Score=40.64  Aligned_cols=146  Identities=19%  Similarity=0.277  Sum_probs=103.3

Q ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111          133 MADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQS  212 (520)
Q Consensus       133 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~  212 (520)
                      -.+|-.-|..|+.-|.+++.++...+..+.+.                    ..|...|..-+..++.+...|+.++..|
T Consensus        22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei--------------------~~eN~~L~epL~~a~~e~~eL~k~L~~y   81 (201)
T PF13851_consen   22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEI--------------------SQENKRLSEPLKKAEEEVEELRKQLKNY   81 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            46667779999999999999998887766554                    4567889999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHH
Q 046111          213 SYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKEL  292 (520)
Q Consensus       213 ~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~L  292 (520)
                      .+-...|..++++++.+++++...    +-+-..|.|++..++..-.+...+..      ..+.++-...   --.|.-|
T Consensus        82 ~kdK~~L~~~k~rl~~~ek~l~~L----k~e~evL~qr~~kle~ErdeL~~kf~------~~i~evqQk~---~~kn~lL  148 (201)
T PF13851_consen   82 EKDKQSLQNLKARLKELEKELKDL----KWEHEVLEQRFEKLEQERDELYRKFE------SAIQEVQQKT---GLKNLLL  148 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH---HHHHHHH
Confidence            999999999999999998888754    44456788888888776544332211      1122222111   1133445


Q ss_pred             HHHHHHHHHhHHHHHHHHh
Q 046111          293 QIEKRELLVKLDAAESKIA  311 (520)
Q Consensus       293 Q~EK~eL~~kL~~AE~~~~  311 (520)
                      +.--..|...|+..++++.
T Consensus       149 EkKl~~l~~~lE~keaqL~  167 (201)
T PF13851_consen  149 EKKLQALSEQLEKKEAQLN  167 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5555555566666666554

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=95.27  E-value=4.8  Score=42.48  Aligned_cols=21  Identities=38%  Similarity=0.477  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 046111          141 ERLRSLVLELQEREVKLEGEL  161 (520)
Q Consensus       141 ~~Lr~lVeeLqERE~~LE~eL  161 (520)
                      +.|+..|.+|+..=..|..+|
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El   43 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKREL   43 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHH
Confidence            677777777777655555544

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=95.27  E-value=11  Score=47.77  Aligned_cols=109  Identities=28%  Similarity=0.284  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-----------
Q 046111          138 RELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQ-----------  206 (520)
Q Consensus       138 ~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~-----------  206 (520)
                      .+..++-.-+++|+++=.+|+.++.             -|++.|.....++..+...+..|+.++.+-.           
T Consensus      1236 ee~~~~~~k~qEl~~~i~kl~~el~-------------plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k 1302 (1822)
T KOG4674|consen 1236 EENEANLEKIQELRDKIEKLNFELA-------------PLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYK 1302 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444444445555555555555444             4555555555555555555555555544332           


Q ss_pred             --------HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH
Q 046111          207 --------EQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEE  259 (520)
Q Consensus       207 --------~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Ee  259 (520)
                              ....++..+.+||+.....|-+|..++....++.+.++..+...+..+...-.
T Consensus      1303 ~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ 1363 (1822)
T KOG4674|consen 1303 DSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELE 1363 (1822)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    22335556667777777777777777777777777777777776666655543

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.22  E-value=2.9  Score=41.41  Aligned_cols=63  Identities=25%  Similarity=0.299  Sum_probs=30.2

Q ss_pred             hHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhh
Q 046111          274 SVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQM  348 (520)
Q Consensus       274 ~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~  348 (520)
                      .++.||.-....=.....++...+.|..+|..|+.++            ..|...+..|-+.+++|-..|..-+.
T Consensus       156 ~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Ra------------e~aE~~v~~Le~~id~le~eL~~~k~  218 (237)
T PF00261_consen  156 NLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRA------------EFAERRVKKLEKEIDRLEDELEKEKE  218 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444445555555555555555443            22344455555555555555544433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=95.21  E-value=7.8  Score=47.21  Aligned_cols=81  Identities=19%  Similarity=0.234  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHH--HHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 046111          142 RLRSLVLELQEREVKLEG--ELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKEL  219 (520)
Q Consensus       142 ~Lr~lVeeLqERE~~LE~--eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~EL  219 (520)
                      .|.+.+..+.-++..|..  +-+-....++=+..+.+.++++..-..++..+....+-++..|..++.........+++|
T Consensus       469 eL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~l  548 (1317)
T KOG0612|consen  469 ELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQL  548 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            444444444444444442  111122233333344455555555555555666666666666666666666666666776


Q ss_pred             HHH
Q 046111          220 EVA  222 (520)
Q Consensus       220 e~a  222 (520)
                      +.+
T Consensus       549 e~~  551 (1317)
T KOG0612|consen  549 EEA  551 (1317)
T ss_pred             HHh
Confidence            643

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.13  E-value=2.5  Score=38.47  Aligned_cols=84  Identities=20%  Similarity=0.309  Sum_probs=48.6

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHH
Q 046111          205 LQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVE  284 (520)
Q Consensus       205 L~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~E  284 (520)
                      .+.++.-+....++|..+|..+..++.++......+..--..|.+.-..+...                 -..|+.++.+
T Consensus        47 YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~q-----------------k~~le~e~~~  109 (132)
T PF07926_consen   47 YERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQ-----------------KEQLEKELSE  109 (132)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----------------HHHHHHHHHH
Confidence            34455566666666666666665555544433332222222222211111111                 1458999999


Q ss_pred             HHHHhHHHHHHHHHHHHhHHH
Q 046111          285 LKRKNKELQIEKRELLVKLDA  305 (520)
Q Consensus       285 LRr~Nk~LQ~EK~eL~~kL~~  305 (520)
                      +++...+|..+|.-|--.|++
T Consensus       110 ~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen  110 LEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999998777763

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=95.02  E-value=2.6  Score=51.00  Aligned_cols=80  Identities=20%  Similarity=0.153  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCC--chhHHHHHHHHHHHhhhhhcHHHHHHHHH------Hhh
Q 046111          277 DLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNM--TESEKVAKAREEVNNLRHANDDLLKQVEG------LQM  348 (520)
Q Consensus       277 ~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv--~e~~~Va~a~eE~~~LR~~NEdL~kqVEq------Lq~  348 (520)
                      .++-++.+|...+..||..+..|.....--.+-+..+...  ...+|++.+++++..|-.+|+.+..++..      .+.
T Consensus       578 ~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~  657 (1317)
T KOG0612|consen  578 QELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQ  657 (1317)
T ss_pred             HHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            3333666777778777777766654332222211111111  13567788888888888888776655443      344


Q ss_pred             cccchhhH
Q 046111          349 NRFGEVEE  356 (520)
Q Consensus       349 dR~seVEE  356 (520)
                      .+++++|+
T Consensus       658 e~~~~~ek  665 (1317)
T KOG0612|consen  658 ERISDSEK  665 (1317)
T ss_pred             HHHHHHHH
Confidence            56666666

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=95.00  E-value=0.0065  Score=68.43  Aligned_cols=175  Identities=23%  Similarity=0.284  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHH
Q 046111          189 DMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVEL  268 (520)
Q Consensus       189 ~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~  268 (520)
                      ..+..++..|+.|+.++.+...++..-..   .....|..|+.+.......++ ....|+..|..|..+-..+.+...++
T Consensus       242 ~~l~~ql~~L~~el~~~e~~~~d~~~~~e---~le~ei~~L~q~~~eL~~~A~-~a~~LrDElD~lR~~a~r~~klE~~v  317 (713)
T PF05622_consen  242 ADLRAQLRRLREELERLEEQRDDLKIELE---ELEKEIDELRQENEELQAEAR-EARALRDELDELREKADRADKLENEV  317 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555554444432222   222334444444333222221 23333333333333332222222222


Q ss_pred             ---HHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH---HHhhcCC-Cc--hhHHHHHHHHHHHhhhhhcHHH
Q 046111          269 ---EKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAES---KIASLSN-MT--ESEKVAKAREEVNNLRHANDDL  339 (520)
Q Consensus       269 ---EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~---~~~~lsn-v~--e~~~Va~a~eE~~~LR~~NEdL  339 (520)
                         .+|+..+.+|...|.+|+-.|..|...+..|-..|..+-+   ++..+.. +.  +... ......+..|...|..|
T Consensus       318 e~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l-~~~~~~~~~l~~e~~~L  396 (713)
T PF05622_consen  318 EKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKL-SEESRRADKLEFENKQL  396 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence               2466666666666666666666666666555444443322   1111000 00  0011 11234455666777777


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHHHH
Q 046111          340 LKQVEGLQMNRFGEVEELVYLRWVNACLR  368 (520)
Q Consensus       340 ~kqVEqLq~dR~seVEELVYLRWVNACLR  368 (520)
                      ...++.|+..+-.-+.|.--|||.+.-|+
T Consensus       397 ~ek~~~l~~eke~l~~e~~~L~e~~eeL~  425 (713)
T PF05622_consen  397 EEKLEALEEEKERLQEERDSLRETNEELE  425 (713)
T ss_dssp             -----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            77888887777777778888888766553

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=94.95  E-value=4.2  Score=42.89  Aligned_cols=74  Identities=34%  Similarity=0.441  Sum_probs=42.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH-hh----cCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcccchh
Q 046111          280 VEVVELKRKNKELQIEKRELLVKLDAAESKI-AS----LSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEV  354 (520)
Q Consensus       280 ~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~-~~----lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~seV  354 (520)
                      .-...|-|...+|+.||-+|...|..=+..+ ..    +..+ +.++++ -..+..+||.+.-||-+.+|+=|       
T Consensus       106 ~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~L-e~e~~~-~q~~le~Lr~EKVdlEn~LE~EQ-------  176 (310)
T PF09755_consen  106 FLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERL-EKEKSA-KQEELERLRREKVDLENTLEQEQ-------  176 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHH-hHHHHHHHHHHHHhHHHHHHHHH-------
Confidence            3445677777888888888888887644221 11    1111 111221 13556677777777777777643       


Q ss_pred             hHHHHHHH
Q 046111          355 EELVYLRW  362 (520)
Q Consensus       355 EELVYLRW  362 (520)
                      |-||.-=|
T Consensus       177 E~lvN~L~  184 (310)
T PF09755_consen  177 EALVNRLW  184 (310)
T ss_pred             HHHHHHHH
Confidence            55665555

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=94.94  E-value=7  Score=44.53  Aligned_cols=31  Identities=26%  Similarity=0.206  Sum_probs=17.5

Q ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046111          133 MADNARELERLRSLVLELQEREVKLEGELLE  163 (520)
Q Consensus       133 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLE  163 (520)
                      +.....+|..|++--.....|-..|+..|-+
T Consensus        31 ~~qmseev~~L~eEk~~~~~~V~eLE~sL~e   61 (617)
T PF15070_consen   31 MQQMSEEVRTLKEEKEHDISRVQELERSLSE   61 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555555555555566666555

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=94.84  E-value=2.5  Score=46.41  Aligned_cols=145  Identities=19%  Similarity=0.178  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 046111          149 ELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKE  228 (520)
Q Consensus       149 eLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~  228 (520)
                      -..+||..|+.+.++.        .++.|+.+-..-...|-.|.--+..|..+.+|+.+++....--......-+..+..
T Consensus       289 ~k~eReasle~Enlqm--------r~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d  360 (502)
T KOG0982|consen  289 IKKEREASLEKENLQM--------RDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMND  360 (502)
T ss_pred             HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555444422        22333333333334444444455555555555555544444333333333333333


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 046111          229 LQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKL  303 (520)
Q Consensus       229 Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL  303 (520)
                      .=++++.+-+.+.+-|.-|+.+...++..--..+..  -.-.---++-+||.||..||.-|.-|..+|.+|--..
T Consensus       361 ~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p--~rgrsSaRe~eleqevkrLrq~nr~l~eqneelngti  433 (502)
T KOG0982|consen  361 ILRRFQEEKEATQELIEELRKELEHLRRRKLVLANP--VRGRSSAREIELEQEVKRLRQPNRILSEQNEELNGTI  433 (502)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccCchhHHHHHHHHHHHHhccccchhhhhhhhhhhhh
Confidence            334466666666666666666665555443221100  0000114567899999999999999999999985443

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=94.83  E-value=12  Score=44.73  Aligned_cols=164  Identities=21%  Similarity=0.305  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHH-------HHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHH----HHHHHHHHHHHHHHHHHHHHHh
Q 046111          143 LRSLVLELQER-------EVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEID----MLNITINSLQAERKKLQEQIAQ  211 (520)
Q Consensus       143 Lr~lVeeLqER-------E~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~----~L~~kI~sLEsEn~RL~~qv~e  211 (520)
                      ||..|++|.|+       ...=...|+|+..||=|---++|...++-.+.+.+.    .-+.....+++=..++..++++
T Consensus       229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad  308 (1243)
T KOG0971|consen  229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMAD  308 (1243)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555554       444456788888888777777776666655544332    2333333344434444444433


Q ss_pred             HHh------------------HHHHHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHhhhhHHH----
Q 046111          212 SSY------------------VKKELEVARNKIKELQRQIQLDA-----------NQTKGQLLLLKQQVSGLQAKE----  258 (520)
Q Consensus       212 ~~~------------------v~~ELe~ar~Kir~Lqkk~~~~a-----------~q~K~qi~~Lkq~V~~Lq~~E----  258 (520)
                      +.-                  +.-|++.++.++.+|.--+...-           ..+--|..-|-|+...|+..=    
T Consensus       309 ~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLR  388 (1243)
T KOG0971|consen  309 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLR  388 (1243)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            322                  23344444444444433332211           112234444444444443321    


Q ss_pred             -------HHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 046111          259 -------EEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAA  306 (520)
Q Consensus       259 -------ee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~A  306 (520)
                             ...-+-..|+|+|-+.+.+|..-.+-|.|....++....+|-...|+|
T Consensus       389 DlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA  443 (1243)
T KOG0971|consen  389 DLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA  443 (1243)
T ss_pred             hcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                   122233445555555555555555555555555555555555555554

>PRK09039 hypothetical protein; Validated

Probab=94.82  E-value=1.5  Score=46.17  Aligned_cols=96  Identities=18%  Similarity=0.175  Sum_probs=55.4

Q ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046111          133 MADNARELERLRSLVLELQEREVKLEGELLEYYG-LKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQ  211 (520)
Q Consensus       133 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~-LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e  211 (520)
                      ..++..+|..|+.....++.+..+|+..+-.-+. ..+-+..+..|+..|.....++......|..|..+...|++|   
T Consensus        76 ~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q---  152 (343)
T PRK09039         76 NQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ---  152 (343)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---
Confidence            3456677777777777777777777776554433 233355566666666666666666666666666666666655   


Q ss_pred             HHhHHHHHHHHHHHHHHHHH
Q 046111          212 SSYVKKELEVARNKIKELQR  231 (520)
Q Consensus       212 ~~~v~~ELe~ar~Kir~Lqk  231 (520)
                      +..+..+|+.++.+.+..+.
T Consensus       153 la~le~~L~~ae~~~~~~~~  172 (343)
T PRK09039        153 LAALEAALDASEKRDRESQA  172 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            23334444444444433333

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.81  E-value=1.7  Score=42.51  Aligned_cols=119  Identities=24%  Similarity=0.328  Sum_probs=80.5

Q ss_pred             HHhhhcc--hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111          161 LLEYYGL--KEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDAN  238 (520)
Q Consensus       161 LLEy~~L--KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~  238 (520)
                      +=.||.=  ...-..|.-|..++..-..........+..+..||.+|          ++-|..|+.++..|++++.. ..
T Consensus        14 iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L----------~epL~~a~~e~~eL~k~L~~-y~   82 (201)
T PF13851_consen   14 IKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRL----------SEPLKKAEEEVEELRKQLKN-YE   82 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHH-HH
Confidence            3446651  23333445555555544445555555555666666654          56677888889999999886 66


Q ss_pred             hhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 046111          239 QTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAE  307 (520)
Q Consensus       239 q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE  307 (520)
                      +.|..+..++.++..++..                 +++|+.|-.-|......|+.|..+|-.|..++=
T Consensus        83 kdK~~L~~~k~rl~~~ek~-----------------l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i  134 (201)
T PF13851_consen   83 KDKQSLQNLKARLKELEKE-----------------LKDLKWEHEVLEQRFEKLEQERDELYRKFESAI  134 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788887777777654322                 577888888888888999999999988887664

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=94.72  E-value=10  Score=43.36  Aligned_cols=50  Identities=18%  Similarity=0.285  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhH----HhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046111          191 LNITINSLQAERKKLQEQIAQS----SYVKKELEVARNKIKELQRQIQLDANQT  240 (520)
Q Consensus       191 L~~kI~sLEsEn~RL~~qv~e~----~~v~~ELe~ar~Kir~Lqkk~~~~a~q~  240 (520)
                      |...+..|+.|...|..++...    ..+-.-...-..++.+|.++++......
T Consensus        85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~  138 (617)
T PF15070_consen   85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQ  138 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444544444444433322    2222222333566777777666554443

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=94.61  E-value=1.6  Score=51.96  Aligned_cols=20  Identities=35%  Similarity=0.645  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHH
Q 046111          278 LEVEVVELKRKNKELQIEKR  297 (520)
Q Consensus       278 LE~Ev~ELRr~Nk~LQ~EK~  297 (520)
                      ||-++.-|++....|+.++.
T Consensus       299 leseiiqlkqkl~dm~~erd  318 (1195)
T KOG4643|consen  299 LESEIIQLKQKLDDMRSERD  318 (1195)
T ss_pred             hHHHHHHHHHHHHHHHHhhh
Confidence            44444444444444444443

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=94.59  E-value=4.3  Score=48.41  Aligned_cols=43  Identities=23%  Similarity=0.359  Sum_probs=24.7

Q ss_pred             hcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 046111          165 YGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQE  207 (520)
Q Consensus       165 ~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~  207 (520)
                      +.|.++...-..|+.-+.-++.-+..|...|..|+-+-+++++
T Consensus       181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~re  223 (1072)
T KOG0979|consen  181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRE  223 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555566666666666666666666555555555543

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=94.59  E-value=11  Score=46.43  Aligned_cols=18  Identities=11%  Similarity=0.274  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 046111          140 LERLRSLVLELQEREVKL  157 (520)
Q Consensus       140 I~~Lr~lVeeLqERE~~L  157 (520)
                      |..|...+.+|.++-..+
T Consensus       744 i~el~~~IaeL~~~i~~l  761 (1353)
T TIGR02680       744 IAELDARLAAVDDELAEL  761 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function

Probab=94.55  E-value=0.14  Score=45.42  Aligned_cols=91  Identities=29%  Similarity=0.396  Sum_probs=63.2

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 046111          174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSG  253 (520)
Q Consensus       174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~  253 (520)
                      ..+|..+|..-..|...|+++|.-|+.+|++|..++..|..--..++.                             ++.
T Consensus         3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~-----------------------------~~~   53 (96)
T PF11365_consen    3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDS-----------------------------LAK   53 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-----------------------------ccc
Confidence            578999999999999999999999999999999988877654443321                             011


Q ss_pred             hhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHH
Q 046111          254 LQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKR  297 (520)
Q Consensus       254 Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~  297 (520)
                      +-.... -..+.+.++..++.   .+.++.+|.+...+||.|||
T Consensus        54 ~~~g~~-~~~~~~~l~~eLk~---a~~qi~~Ls~kv~eLq~ENR   93 (96)
T PF11365_consen   54 LSEGGS-PSGREAELQEELKL---AREQINELSGKVMELQYENR   93 (96)
T ss_pred             CCCCCC-CccccHHHHHHHHH---HHHHHHHHhhHHHHHhhccc
Confidence            111110 02233345555555   56677888888888888887

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.41  E-value=5.8  Score=39.32  Aligned_cols=217  Identities=21%  Similarity=0.210  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Q 046111          141 ERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELE  220 (520)
Q Consensus       141 ~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe  220 (520)
                      ..|+.-+...++|...++.+|-+.             +..+.....++..|+.+|..|+.+..+....+.....=..+++
T Consensus         4 ~~l~~eld~~~~~~~~~~~~l~~~-------------~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e   70 (237)
T PF00261_consen    4 QQLKDELDEAEERLEEAEEKLKEA-------------EKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAE   70 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            344445555555555554443332             2222333455555666666665555554443332222222222


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhh----HHhHHHHHHHHHHHhHHHHHHH
Q 046111          221 VARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKS----VKDLEVEVVELKRKNKELQIEK  296 (520)
Q Consensus       221 ~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~----l~~LE~Ev~ELRr~Nk~LQ~EK  296 (520)
                      ..-..+..-.+.+.......-..+..|..++......-.++-.+..++..|+..    |...|.-+..+-....+|+.+.
T Consensus        71 ~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el  150 (237)
T PF00261_consen   71 KRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEEL  150 (237)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Confidence            222222222222222223333444455555555444444444455555544433    2223334444444555555555


Q ss_pred             HHHHHhHHHHHHHHhhcCCCchhHHHHH---HHHHHHhhhhhcHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH
Q 046111          297 RELLVKLDAAESKIASLSNMTESEKVAK---AREEVNNLRHANDDLLKQVEGLQMNRFGEVEELVYLRWVNACLRYEL  371 (520)
Q Consensus       297 ~eL~~kL~~AE~~~~~lsnv~e~~~Va~---a~eE~~~LR~~NEdL~kqVEqLq~dR~seVEELVYLRWVNACLR~EL  371 (520)
                      ..+.-.|.+.++.-...+.. +..+-.+   ..+.....-..-+..-+.|..|+..-..=-.+|.-.+==+.|++.||
T Consensus       151 ~~~~~~lk~lE~~~~~~~~r-e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el  227 (237)
T PF00261_consen  151 KSVGNNLKSLEASEEKASER-EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL  227 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54444444444322111111 1111111   11111111112233445555555444433445555666666777666

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.18  E-value=9.7  Score=40.95  Aligned_cols=73  Identities=15%  Similarity=0.324  Sum_probs=46.5

Q ss_pred             HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcc
Q 046111          276 KDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNR  350 (520)
Q Consensus       276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR  350 (520)
                      ..|...+.+++.....|+.+...|...++..+..+..++..  ..-......+++..+..=+.|.+..++.+...
T Consensus       313 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~--~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~~  385 (498)
T TIGR03007       313 QQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEV--EAELTQLNRDYEVNKSNYEQLLTRRESAEVSK  385 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            44555556666666666666666666666666665555543  33334467777777777788888888887663

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=94.09  E-value=7.5  Score=44.11  Aligned_cols=164  Identities=23%  Similarity=0.272  Sum_probs=82.1

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Q 046111          175 VELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGL  254 (520)
Q Consensus       175 ~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~L  254 (520)
                      .+++.+++.-++++..+...+...+.++.+++.++.-..++..=|.-+-.-|    .|++.....+.+.+..|.++-...
T Consensus       345 ~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni----~kL~~~v~~s~~rl~~L~~qWe~~  420 (594)
T PF05667_consen  345 EELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI----AKLQALVEASEQRLVELAQQWEKH  420 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444445555555555555555555555554444443333333333    344444445555555555554332


Q ss_pred             hHHHHHHhhhhHHHHH----HHhhHHhHHHHHHHHHHHhHHHHHHH---HHHHHhHHHHHHHHhhcCC-CchhHHHHHHH
Q 046111          255 QAKEEEAIKKDVELEK----KLKSVKDLEVEVVELKRKNKELQIEK---RELLVKLDAAESKIASLSN-MTESEKVAKAR  326 (520)
Q Consensus       255 q~~Eee~~~~d~E~Ek----Kl~~l~~LE~Ev~ELRr~Nk~LQ~EK---~eL~~kL~~AE~~~~~lsn-v~e~~~Va~a~  326 (520)
                      ..-=.+   ....+..    +....+..-.++.+||+.-+++..|.   .++..+|.+.   +..++. ++-+--+.++.
T Consensus       421 R~pL~~---e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e---~e~~~k~~~Rs~Yt~RIl  494 (594)
T PF05667_consen  421 RAPLIE---EYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKE---LEKLPKDVNRSAYTRRIL  494 (594)
T ss_pred             HhHHHH---HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCCCCHHHHHHHHH
Confidence            221111   1111111    11122334467777777777777664   4455555543   322222 22345666777


Q ss_pred             HHHHhhhhhcHHHHHHHH---HHhh
Q 046111          327 EEVNNLRHANDDLLKQVE---GLQM  348 (520)
Q Consensus       327 eE~~~LR~~NEdL~kqVE---qLq~  348 (520)
                      +=+.+.|.-++|..|-+.   +||+
T Consensus       495 EIv~NI~KQk~eI~KIl~DTr~lQk  519 (594)
T PF05667_consen  495 EIVKNIRKQKEEIEKILSDTRELQK  519 (594)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888777665   4554

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.09  E-value=7.1  Score=41.96  Aligned_cols=19  Identities=26%  Similarity=0.130  Sum_probs=11.4

Q ss_pred             cccchhhHHHHHHHHHHHH
Q 046111          349 NRFGEVEELVYLRWVNACL  367 (520)
Q Consensus       349 dR~seVEELVYLRWVNACL  367 (520)
                      .|-.++.+=+|.--+...-
T Consensus       361 ~Re~~~~~~~Y~~l~~r~e  379 (498)
T TIGR03007       361 NRDYEVNKSNYEQLLTRRE  379 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4445666667776666443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=94.07  E-value=15  Score=42.69  Aligned_cols=188  Identities=22%  Similarity=0.273  Sum_probs=90.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH-HHHHH----HHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH
Q 046111          185 TVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVAR-NKIKE----LQRQIQLDANQTKGQLLLLKQQVSGLQAKEE  259 (520)
Q Consensus       185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar-~Kir~----Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Ee  259 (520)
                      .+|++.|...-..-++|-+.|++-++.-..++..||.+. ..+.+    =+.++........+.+..|..++.+|+..  
T Consensus       100 a~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~--  177 (739)
T PF07111_consen  100 AEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKS--  177 (739)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            445555555555556666777776666666666555443 11111    12233333334444444444444444332  


Q ss_pred             HHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHh--------
Q 046111          260 EAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNN--------  331 (520)
Q Consensus       260 e~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~--------  331 (520)
                                  +   +.||.............|.|...|-..|.-++..+.+.     .-.|...+.-+-.        
T Consensus       178 ------------L---~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q-----~tlv~~LR~YvGeq~p~~~~~  237 (739)
T PF07111_consen  178 ------------L---ESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQ-----VTLVEQLRKYVGEQVPPEVHS  237 (739)
T ss_pred             ------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHhhhCCccccc
Confidence                        2   33333333333333344444444444444444332111     0011111111100        


Q ss_pred             --hhhhcHHHHHHHHHHhhcccc--hhhHHHHHHHHH----HHHHHHHhhcCCCCCCccccccccCCCcchHHHHHHHH
Q 046111          332 --LRHANDDLLKQVEGLQMNRFG--EVEELVYLRWVN----ACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLM  402 (520)
Q Consensus       332 --LR~~NEdL~kqVEqLq~dR~s--eVEELVYLRWVN----ACLR~ELrn~~~p~gk~sA~DLsk~lSpkSqekAKqLm  402 (520)
                        --...+.|..-|..|+.||.+  -.-||.--|-=+    =||..|=-....|+        +.+|-|.+..|+++|+
T Consensus       238 ~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp--------~d~Le~e~~~K~q~LL  308 (739)
T PF07111_consen  238 QAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQP--------SDPLEPEFSRKCQQLL  308 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--------CCCCCchhHHHHHHHH
Confidence              012235588888888888864  345666655322    26766554444432        4577888888888876

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=93.84  E-value=16  Score=42.35  Aligned_cols=173  Identities=21%  Similarity=0.169  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch---hhhhHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111          137 ARELERLRSLVLELQEREVKLEGELLEYYGLK---EQESDIVELQRQLKI---KTVEIDMLNITINSLQAERKKLQEQIA  210 (520)
Q Consensus       137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LK---EQEa~v~ELe~~L~~---k~~Ei~~L~~kI~sLEsEn~RL~~qv~  210 (520)
                      ..|++.|+..+..+.+.|..=-.+.-.=..++   +.....-+|+...+.   --+|+..-.-.++-+|++|.+|-.++.
T Consensus       399 ~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~  478 (698)
T KOG0978|consen  399 RAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELR  478 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666666555544322111111112   334444444444443   346666667778889999999887775


Q ss_pred             h----HHhHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhhHHHHH----HhhhhHHHHHHHhhHHhHH
Q 046111          211 Q----SSYVKKELEVARNKIKELQRQIQLDANQ---TKGQLLLLKQQVSGLQAKEEE----AIKKDVELEKKLKSVKDLE  279 (520)
Q Consensus       211 e----~~~v~~ELe~ar~Kir~Lqkk~~~~a~q---~K~qi~~Lkq~V~~Lq~~Eee----~~~~d~E~EkKl~~l~~LE  279 (520)
                      +    +.++..+...+..+++.|....+....+   .+.+..++...+..|+.++.-    ...--.++....+.+..+=
T Consensus       479 ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~k  558 (698)
T KOG0978|consen  479 EKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLK  558 (698)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHH
Confidence            4    5678888888888888888877655443   355666666666666666521    1222334444444555555


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 046111          280 VEVVELKRKNKELQIEKRELLVKLDAAESK  309 (520)
Q Consensus       280 ~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~  309 (520)
                      ..+.++.+....||.+......+|...+-+
T Consensus       559 k~~~e~~~~~~~Lq~~~ek~~~~le~i~~~  588 (698)
T KOG0978|consen  559 KKAQEAKQSLEDLQIELEKSEAKLEQIQEQ  588 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666666666666666666665555443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=93.80  E-value=17  Score=42.57  Aligned_cols=101  Identities=18%  Similarity=0.209  Sum_probs=56.7

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHH
Q 046111          212 SSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKE  291 (520)
Q Consensus       212 ~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~  291 (520)
                      +..+..+|.+.....-.||.-+....-.-...-..|-++-..+..-+++...-..|+...-..+..-+.+|.-|++....
T Consensus       324 i~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~  403 (775)
T PF10174_consen  324 IEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIEN  403 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555554443333332222223333333333344445555566666666666777777777777777


Q ss_pred             HHHHHHHHHHhHHHHHHHHhh
Q 046111          292 LQIEKRELLVKLDAAESKIAS  312 (520)
Q Consensus       292 LQ~EK~eL~~kL~~AE~~~~~  312 (520)
                      |+...++=..+|+.+..++.+
T Consensus       404 Lee~l~ekd~ql~~~k~Rl~~  424 (775)
T PF10174_consen  404 LEEQLREKDRQLDEEKERLSS  424 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            777777777777777776654

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=93.55  E-value=2.7  Score=48.89  Aligned_cols=66  Identities=23%  Similarity=0.219  Sum_probs=50.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 046111          185 TVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSG  253 (520)
Q Consensus       185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~  253 (520)
                      ......++.++.+||+=|.-|+.|+.+..+   .++..+.|+.+|-|-+......+|.=..+++++=..
T Consensus       419 ~~~~~~~n~El~sLqSlN~~Lq~ql~es~k---~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~  484 (861)
T PF15254_consen  419 TSGSQDCNLELFSLQSLNMSLQNQLQESLK---SQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQE  484 (861)
T ss_pred             cCCCcccchhhHHHHHHHHHHHHHHHHHHH---hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444456889999999999999999988765   456778888888888888888887666665554333

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=93.43  E-value=17  Score=41.36  Aligned_cols=56  Identities=18%  Similarity=0.205  Sum_probs=37.4

Q ss_pred             hHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111          255 QAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI  310 (520)
Q Consensus       255 q~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~  310 (520)
                      +..+......-.+++.++..+...+.+..+|.|.-.-.+.--..|..|++.+....
T Consensus       351 ~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~  406 (754)
T TIGR01005       351 QARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ  406 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33333333334446666666777788888888888887777788888888776543

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=93.35  E-value=16  Score=40.76  Aligned_cols=83  Identities=16%  Similarity=0.217  Sum_probs=63.4

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 046111          173 DIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVS  252 (520)
Q Consensus       173 ~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~  252 (520)
                      .+..|++++......|..  .++...++.+..+..++..+-.+.+--..|+..+.....++.....+++++...|+..+.
T Consensus       257 ~i~~l~~~i~~~~~~l~~--l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~  334 (569)
T PRK04778        257 EIQDLKEQIDENLALLEE--LDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEID  334 (569)
T ss_pred             HHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444433333333  355667788889999999998888888899999999999999999999999999998888


Q ss_pred             hhhHH
Q 046111          253 GLQAK  257 (520)
Q Consensus       253 ~Lq~~  257 (520)
                      .++..
T Consensus       335 ~l~~s  339 (569)
T PRK04778        335 RVKQS  339 (569)
T ss_pred             HHHHc
Confidence            88765

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.24  E-value=11  Score=44.44  Aligned_cols=35  Identities=31%  Similarity=0.386  Sum_probs=23.6

Q ss_pred             HHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHH
Q 046111          267 ELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLV  301 (520)
Q Consensus       267 E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~  301 (520)
                      |++.|++.+.-+-+.+.|||....-+|..+++|-.
T Consensus       557 E~esk~~eidi~n~qlkelk~~~~~q~lake~~yk  591 (1118)
T KOG1029|consen  557 ETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYK  591 (1118)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666777777777777777766666644

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=93.20  E-value=21  Score=41.58  Aligned_cols=166  Identities=26%  Similarity=0.340  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HhhhcchhhhhH-----------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 046111          139 ELERLRSLVLELQEREVKLEGEL----LEYYGLKEQESD-----------IVELQRQLKIKTVEIDMLNITINSLQAERK  203 (520)
Q Consensus       139 EI~~Lr~lVeeLqERE~~LE~eL----LEy~~LKEQEa~-----------v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~  203 (520)
                      +-..+....++|+.+|..|-.-|    -+...|+.|-+.           |.+|.++|...+.-=..|......|.-||.
T Consensus       423 ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk  502 (786)
T PF05483_consen  423 EKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKK  502 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566777788888887765432    133334333332           334455554433333345556666677777


Q ss_pred             HHHHHHHhHH----hHHHHHHHHHHHHHHHHHHHH----------HHHHhhHHHHHHHHHHHhh-hhHHHHHHhhhhHHH
Q 046111          204 KLQEQIAQSS----YVKKELEVARNKIKELQRQIQ----------LDANQTKGQLLLLKQQVSG-LQAKEEEAIKKDVEL  268 (520)
Q Consensus       204 RL~~qv~e~~----~v~~ELe~ar~Kir~Lqkk~~----------~~a~q~K~qi~~Lkq~V~~-Lq~~Eee~~~~d~E~  268 (520)
                      .++-+.....    ++.+.+...+.+--.+-++|.          -+.+..+.++.--.+.|.. |...++.+.....++
T Consensus       503 ~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~  582 (786)
T PF05483_consen  503 QLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEI  582 (786)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHH
Confidence            6665444332    233333333322222222222          2233333333333333433 455556666667778


Q ss_pred             HHHHhhHHhHHHHHHHHHH-------HhHHHHHHHHHHHHhHH
Q 046111          269 EKKLKSVKDLEVEVVELKR-------KNKELQIEKRELLVKLD  304 (520)
Q Consensus       269 EkKl~~l~~LE~Ev~ELRr-------~Nk~LQ~EK~eL~~kL~  304 (520)
                      .++.+.++-||.++.-||+       ...+||.+|--|-.+..
T Consensus       583 ~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~  625 (786)
T PF05483_consen  583 LKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKIT  625 (786)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            8888888888888888876       44678888888866654

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.16  E-value=16  Score=44.06  Aligned_cols=176  Identities=16%  Similarity=0.192  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh----H
Q 046111          137 ARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQ----S  212 (520)
Q Consensus       137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e----~  212 (520)
                      .++|......++.-++.=..||.-.-++..  +++..+.+|++.|.....+++......+.=+-+-++|+-++.+    +
T Consensus       754 ~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~--~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~  831 (1174)
T KOG0933|consen  754 EQQIKEKERALKKCEDKISTLEKKMKDAKA--NRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEI  831 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444445555555555566666666655  4444555565555554444443333332222222222222211    1


Q ss_pred             HhHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHH
Q 046111          213 SYVKKELEVA-------RNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVEL  285 (520)
Q Consensus       213 ~~v~~ELe~a-------r~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~EL  285 (520)
                      .....+|+..       +.++-.|..++.......++-...|+.+=..+.....++...-...++.++...+++.++.+|
T Consensus       832 ~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkl  911 (1174)
T KOG0933|consen  832 SSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKL  911 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHH
Confidence            1112222222       222333333332222222222222222222222222333344445566666677777777777


Q ss_pred             HHHhHHHHHHHHHHHHhHHHHHHHHhhcC
Q 046111          286 KRKNKELQIEKRELLVKLDAAESKIASLS  314 (520)
Q Consensus       286 Rr~Nk~LQ~EK~eL~~kL~~AE~~~~~ls  314 (520)
                      -.-...++.++.+...+++.-..+..-++
T Consensus       912 e~e~~~~~~e~~~~~k~v~~l~~k~~wi~  940 (1174)
T KOG0933|consen  912 EHEVTKLESEKANARKEVEKLLKKHEWIG  940 (1174)
T ss_pred             HhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence            77778888888888888887776655444

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=93.04  E-value=23  Score=41.62  Aligned_cols=73  Identities=25%  Similarity=0.271  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 046111          143 LRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQL-KIKTVEIDMLNITINSLQAERKKLQEQIAQSSYV  215 (520)
Q Consensus       143 Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L-~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v  215 (520)
                      |+..++.+.++...|+..+-.|-.++-+-..+..++.+. ......++.+...+..++...++|.+...+....
T Consensus       230 l~~e~e~l~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~  303 (908)
T COG0419         230 LEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEEL  303 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667777777776666655555333333322222222 2333334444444444444444444433333333

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=93.00  E-value=12  Score=39.60  Aligned_cols=88  Identities=18%  Similarity=0.320  Sum_probs=47.7

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH------------------hHHHHHHHHHHHHHHHHHHHH-
Q 046111          174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSS------------------YVKKELEVARNKIKELQRQIQ-  234 (520)
Q Consensus       174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~------------------~v~~ELe~ar~Kir~Lqkk~~-  234 (520)
                      +.=|-++|.--..|-|.|...++.|+.....|.....+..                  .+..-|..+|..++-|+..+. 
T Consensus        11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~   90 (319)
T PF09789_consen   11 LLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEE   90 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3334455555556666666666666666555554433322                  233444555666655555433 


Q ss_pred             --HHHHhhHHHHHHHHHHHhhhhHHHHHH
Q 046111          235 --LDANQTKGQLLLLKQQVSGLQAKEEEA  261 (520)
Q Consensus       235 --~~a~q~K~qi~~Lkq~V~~Lq~~Eee~  261 (520)
                        .....+++++-+|+++++..+..-..+
T Consensus        91 Lrqkl~E~qGD~KlLR~~la~~r~~~~~~  119 (319)
T PF09789_consen   91 LRQKLNEAQGDIKLLREKLARQRVGDEGI  119 (319)
T ss_pred             HHHHHHHHhchHHHHHHHHHhhhhhhccc
Confidence              333445666777777766665555333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=92.84  E-value=19  Score=40.21  Aligned_cols=53  Identities=23%  Similarity=0.314  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHhhhhhcHHHHHHHHHHh-----hcccchhhHHHHHHHHHHHHHHHHhhcC
Q 046111          321 KVAKAREEVNNLRHANDDLLKQVEGLQ-----MNRFGEVEELVYLRWVNACLRYELRNYQ  375 (520)
Q Consensus       321 ~Va~a~eE~~~LR~~NEdL~kqVEqLq-----~dR~seVEELVYLRWVNACLR~ELrn~~  375 (520)
                      -+..+.+.++.|...-.||...+..|.     .+||-..-+-|--..-.|=.-|  |+|.
T Consensus       477 e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~~f~~Ae~lF--~~~~  534 (569)
T PRK04778        477 LLEEATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEEVAEALNEAERLF--REYD  534 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH--HhCC
Confidence            345566777777777777777666554     6777555555555555555555  5554

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=92.81  E-value=18  Score=39.79  Aligned_cols=30  Identities=20%  Similarity=0.337  Sum_probs=15.7

Q ss_pred             HHhhHHhHHHHHHHHHHHhHHHHHHHHHHH
Q 046111          271 KLKSVKDLEVEVVELKRKNKELQIEKRELL  300 (520)
Q Consensus       271 Kl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~  300 (520)
                      ..+.+..|.....+|...-..+.-|+.+|.
T Consensus       159 ~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~  188 (420)
T COG4942         159 RAERIDALKATLKQLAAVRAEIAAEQAELT  188 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555555555555555554

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.75  E-value=18  Score=41.14  Aligned_cols=58  Identities=24%  Similarity=0.238  Sum_probs=32.2

Q ss_pred             HHHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 046111          174 IVELQRQLKIKTVEID-MLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQR  231 (520)
Q Consensus       174 v~ELe~~L~~k~~Ei~-~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqk  231 (520)
                      .-+++.+|+.+=...- -...+|+.|++.|..|.+++.+..+.-.-++-.|.+.+.||.
T Consensus       215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~  273 (581)
T KOG0995|consen  215 SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQD  273 (581)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHh
Confidence            5555555554433332 255666777777777777766555555555555555554443

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.70  E-value=15  Score=43.26  Aligned_cols=163  Identities=28%  Similarity=0.310  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----Hh--hhcchhhhhH-HHHHHHHHhhhhhHHHH-----HHHHHHHHHHHHHH
Q 046111          137 ARELERLRSLVLELQEREVKLEGEL----LE--YYGLKEQESD-IVELQRQLKIKTVEIDM-----LNITINSLQAERKK  204 (520)
Q Consensus       137 ~~EI~~Lr~lVeeLqERE~~LE~eL----LE--y~~LKEQEa~-v~ELe~~L~~k~~Ei~~-----L~~kI~sLEsEn~R  204 (520)
                      ..|+++=|..+++=|.||..=..+.    -+  -...+|||-- -.|||++|.- .-||++     -++.|+..|+-.+-
T Consensus       326 qaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLer-QReiE~qrEEerkkeie~rEaar~E  404 (1118)
T KOG1029|consen  326 QAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLER-QREIERQREEERKKEIERREAAREE  404 (1118)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688888888887776665322211    11  2234444432 3455555542 222222     22233333322222


Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHhhhhHHHHHHhhh-----------------
Q 046111          205 LQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQT---KGQLLLLKQQVSGLQAKEEEAIKK-----------------  264 (520)
Q Consensus       205 L~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~---K~qi~~Lkq~V~~Lq~~Eee~~~~-----------------  264 (520)
                      |+.        ..+|+.-|+++.+|+.+..++.+..   +++...|.+....|+.+-.+...+                 
T Consensus       405 lEk--------qRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~  476 (1118)
T KOG1029|consen  405 LEK--------QRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEE  476 (1118)
T ss_pred             HHH--------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHH
Confidence            222        2334555577777777776665554   334444444454444443332222                 


Q ss_pred             -hHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111          265 -DVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAES  308 (520)
Q Consensus       265 -d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~  308 (520)
                       +--.+..+..+..|-..+.|+...+-.|--|+..|--+|-..++
T Consensus       477 ~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~  521 (1118)
T KOG1029|consen  477 VTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQS  521 (1118)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence             11122334445556666666777777777778888777776554

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=92.62  E-value=11  Score=42.81  Aligned_cols=26  Identities=8%  Similarity=0.098  Sum_probs=13.1

Q ss_pred             HHHHHHHhhhhhcHHHHHHHHHHhhc
Q 046111          324 KAREEVNNLRHANDDLLKQVEGLQMN  349 (520)
Q Consensus       324 ~a~eE~~~LR~~NEdL~kqVEqLq~d  349 (520)
                      ..+.+++..+..=+.|....++.+..
T Consensus       380 ~L~Re~~~~~~~Y~~ll~r~~e~~~~  405 (754)
T TIGR01005       380 ALQRDAAAKRQLYESYLTNYRQAASR  405 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455555555555555555554443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=92.56  E-value=18  Score=42.24  Aligned_cols=130  Identities=26%  Similarity=0.260  Sum_probs=78.8

Q ss_pred             hhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 046111          163 EYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKG  242 (520)
Q Consensus       163 Ey~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~  242 (520)
                      |-+.|+|.-+.=..|.+++..-..|++-++..+...++||.||.....++....+.++.-|.++|.=-       +..|.
T Consensus        18 Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~-------ke~K~   90 (717)
T PF09730_consen   18 EESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEI-------KEYKF   90 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence            33444444444444555555556677777888888888888888888887777777766655543322       22222


Q ss_pred             HHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 046111          243 QLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAA  306 (520)
Q Consensus       243 qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~A  306 (520)
                      .=.-|=+-.+.|+...+.       ++|-+..++.=-+|++-|+--+++|++|..-|--.|+.|
T Consensus        91 rE~rll~dyselEeENis-------lQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~  147 (717)
T PF09730_consen   91 REARLLQDYSELEEENIS-------LQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA  147 (717)
T ss_pred             HHHHHhhhhHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            112222233333333322       555556666666777888888888888888776666644

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=92.51  E-value=16  Score=39.39  Aligned_cols=24  Identities=13%  Similarity=0.088  Sum_probs=11.2

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHhh
Q 046111          289 NKELQIEKRELLVKLDAAESKIAS  312 (520)
Q Consensus       289 Nk~LQ~EK~eL~~kL~~AE~~~~~  312 (520)
                      ..+++.+...|.-.+..++.++..
T Consensus       238 ~~~~~~~i~~l~~~i~~~~~~~~~  261 (457)
T TIGR01000       238 LATIQQQIDQLQKSIASYQVQKAG  261 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334444444444445555544443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=92.49  E-value=1.5  Score=49.61  Aligned_cols=73  Identities=14%  Similarity=0.360  Sum_probs=50.3

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHH
Q 046111          181 LKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAK  257 (520)
Q Consensus       181 L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~  257 (520)
                      +.....++..|..+++.|+.||.-|+..+.++.   .+++..++++..+++++.......+ ++.++..++..|+.+
T Consensus       417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k---~eie~L~~~l~~~~r~~~~~~~~~r-ei~~~~~~I~~L~~~  489 (652)
T COG2433         417 ITVYEKRIKKLEETVERLEEENSELKRELEELK---REIEKLESELERFRREVRDKVRKDR-EIRARDRRIERLEKE  489 (652)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHH
Confidence            345566788889999999999999888877765   6677777788777777775544443 344555555554443

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.44  E-value=26  Score=40.74  Aligned_cols=189  Identities=25%  Similarity=0.226  Sum_probs=100.2

Q ss_pred             hhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHhhhhhHHHHHHHH----HHHHHH
Q 046111          126 NKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYY-GLKEQESDIVELQRQLKIKTVEIDMLNIT----INSLQA  200 (520)
Q Consensus       126 ~~~~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~-~LKEQEa~v~ELe~~L~~k~~Ei~~L~~k----I~sLEs  200 (520)
                      .+.|+.+.+-..-....|+.+-..+..+|..|+-++++-- .+++-...+-+|-+.+..+.+|.+-|..+    ++.++-
T Consensus        93 ~r~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~  172 (716)
T KOG4593|consen   93 ARNYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQW  172 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555444455566777777888889999999988877 67766666777777777666666555443    444554


Q ss_pred             HHHHHHHHHHhH----HhHHHHHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHH--
Q 046111          201 ERKKLQEQIAQS----SYVKKELEVARNKIKELQRQIQL------DANQTKGQLLLLKQQVSGLQAKEEEAIKKDVEL--  268 (520)
Q Consensus       201 En~RL~~qv~e~----~~v~~ELe~ar~Kir~Lqkk~~~------~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~--  268 (520)
                      +-.-+...+...    ....++|..-..++....+++..      ...+.++|+.-.-++++.....+.--....+.+  
T Consensus       173 e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqe  252 (716)
T KOG4593|consen  173 EVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQE  252 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            444333333322    22233333333333333333331      223334444444445444422222111111111  


Q ss_pred             -HHHHhhHHhHHHHHH---HHHHHhHHHHHHHHHHHHhHHHHHHHHhhcC
Q 046111          269 -EKKLKSVKDLEVEVV---ELKRKNKELQIEKRELLVKLDAAESKIASLS  314 (520)
Q Consensus       269 -EkKl~~l~~LE~Ev~---ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~ls  314 (520)
                       +.--.++..+-.|+.   +.++++.-||.|+..|-.||--++--.+.+-
T Consensus       253 l~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~  302 (716)
T KOG4593|consen  253 LEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLL  302 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             111111222223444   6677888888888888888777665444333

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=92.43  E-value=12  Score=36.84  Aligned_cols=27  Identities=19%  Similarity=0.263  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 046111          188 IDMLNITINSLQAERKKLQEQIAQSSY  214 (520)
Q Consensus       188 i~~L~~kI~sLEsEn~RL~~qv~e~~~  214 (520)
                      +-.+...|..+.+++..|+.++.+...
T Consensus        22 L~~~~~~l~~~~~~~~~l~~~i~~~l~   48 (302)
T PF10186_consen   22 LLELRSELQQLKEENEELRRRIEEILE   48 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555666666666665555544

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.36  E-value=2.6  Score=43.85  Aligned_cols=33  Identities=30%  Similarity=0.313  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111          278 LEVEVVELKRKNKELQIEKRELLVKLDAAESKI  310 (520)
Q Consensus       278 LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~  310 (520)
                      |..+-.+.-+....++.+..++...+++.+.++
T Consensus        90 l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~  122 (314)
T PF04111_consen   90 LDEEEEEYWREYNELQLELIEFQEERDSLKNQY  122 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444555555555555555555554443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=92.36  E-value=42  Score=42.95  Aligned_cols=27  Identities=26%  Similarity=0.039  Sum_probs=20.0

Q ss_pred             HHHHHHHHhhcccchhhHHHHHHHHHH
Q 046111          339 LLKQVEGLQMNRFGEVEELVYLRWVNA  365 (520)
Q Consensus       339 L~kqVEqLq~dR~seVEELVYLRWVNA  365 (520)
                      ...-+||+.+.|..+-|+++-.+-.++
T Consensus      1481 ~~~~le~~k~e~~~e~e~~~~~~~~~~ 1507 (1822)
T KOG4674|consen 1481 KSENLEGTKKELESEKEELKQRLTELA 1507 (1822)
T ss_pred             HHHhHHHHHHHHhhhHHHHHHHHHHHH
Confidence            456778888888888888887665544

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=92.10  E-value=7  Score=41.96  Aligned_cols=117  Identities=21%  Similarity=0.146  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 046111          140 LERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKEL  219 (520)
Q Consensus       140 I~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~EL  219 (520)
                      =+.||..-+.++||-...+.=-+----|+.|-..+++   -+.-...++..|.-.|..+.+||.+|+.++.++..-..|-
T Consensus        84 ~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~---vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ek  160 (401)
T PF06785_consen   84 DEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVRE---VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEK  160 (401)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHh
Confidence            3567777777777765443222222334444443333   2233456778899999999999999999999888776544


Q ss_pred             H-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH
Q 046111          220 E-VARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEE  259 (520)
Q Consensus       220 e-~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Ee  259 (520)
                      + .+..=+|+|..-+...+.=+-+.-..+-+|-+.|..+..
T Consensus       161 eeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~  201 (401)
T PF06785_consen  161 EEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQA  201 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHH
Confidence            3 444555565555544444444444444444444444443

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=92.07  E-value=14  Score=36.81  Aligned_cols=22  Identities=27%  Similarity=0.332  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhH
Q 046111          191 LNITINSLQAERKKLQEQIAQS  212 (520)
Q Consensus       191 L~~kI~sLEsEn~RL~~qv~e~  212 (520)
                      |...|+.|+.-|++|..+.+.+
T Consensus         6 L~~~v~dL~~~n~~L~~en~kL   27 (193)
T PF14662_consen    6 LLSCVEDLQLNNQKLADENAKL   27 (193)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHH
Confidence            3344555666666655554433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.01  E-value=9.6  Score=44.15  Aligned_cols=68  Identities=24%  Similarity=0.311  Sum_probs=50.8

Q ss_pred             hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046111          170 QESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQT  240 (520)
Q Consensus       170 QEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~  240 (520)
                      |..+..+++.++..-..+.+.-..++..|+.+.+.|++.+..   +.+.++.|+.+-+.|.+|++...+..
T Consensus       556 ~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~---LaeR~e~a~d~Qe~L~~R~~~vl~~l  623 (717)
T PF10168_consen  556 QDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEK---LAERYEEAKDKQEKLMKRVDRVLQLL  623 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556778888888888888888888888888888877754443   33568888888888888887766554

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=91.95  E-value=11  Score=35.56  Aligned_cols=101  Identities=29%  Similarity=0.395  Sum_probs=50.3

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 046111          173 DIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVS  252 (520)
Q Consensus       173 ~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~  252 (520)
                      .+.++++++..-..+++.+...+..++.+...++.......   +++...+.++..+...++......            
T Consensus        82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~e~------------  146 (191)
T PF04156_consen   82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR---ELLKSVEERLDSLDESIKELEKEI------------  146 (191)
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence            45555555555556666666666666666665555554444   333333333333322222111111            


Q ss_pred             hhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111          253 GLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLD  304 (520)
Q Consensus       253 ~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~  304 (520)
                                   .++.   +.++++..++.+++....+++.....+..++.
T Consensus       147 -------------~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  182 (191)
T PF04156_consen  147 -------------RELQ---KELQDSREEVQELRSQLERLQENLQQLEEKIQ  182 (191)
T ss_pred             -------------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         1111   33455666666666666666666666655444

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.85  E-value=29  Score=41.13  Aligned_cols=85  Identities=16%  Similarity=0.225  Sum_probs=55.7

Q ss_pred             HHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhh--hhhc
Q 046111          259 EEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNL--RHAN  336 (520)
Q Consensus       259 ee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~L--R~~N  336 (520)
                      .+.-+...+++.++..+......+.+|.-.++-+-.++.....||..-+.++...+|.     +++.-|....|  -..+
T Consensus       813 ~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nl-----i~~ltEk~~sl~~qads  887 (970)
T KOG0946|consen  813 SELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNL-----IKELTEKISSLEAQADS  887 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhH-----HHHHhhhhhhHHHhhcc
Confidence            3334445567777777888888888888888888888888888888777777655554     22222333322  2245


Q ss_pred             HHHHHHHHHHhh
Q 046111          337 DDLLKQVEGLQM  348 (520)
Q Consensus       337 EdL~kqVEqLq~  348 (520)
                      +-|+|.|++-.+
T Consensus       888 e~l~ka~~~~k~  899 (970)
T KOG0946|consen  888 ETLSKALKTVKS  899 (970)
T ss_pred             hHHHHHHHHhhc
Confidence            667888877666

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=91.48  E-value=15  Score=36.08  Aligned_cols=20  Identities=30%  Similarity=0.355  Sum_probs=8.9

Q ss_pred             HHHHHHHHHhhhhhcHHHHH
Q 046111          322 VAKAREEVNNLRHANDDLLK  341 (520)
Q Consensus       322 Va~a~eE~~~LR~~NEdL~k  341 (520)
                      +..+..++..|......|..
T Consensus       166 ~~~~~~~~~~l~~ei~~L~~  185 (194)
T PF15619_consen  166 HKEAQEEVKSLQEEIQRLNQ  185 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444555554444444433

>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants

Probab=91.39  E-value=27  Score=38.84  Aligned_cols=77  Identities=29%  Similarity=0.308  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcccchhhHH
Q 046111          279 EVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEEL  357 (520)
Q Consensus       279 E~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~seVEEL  357 (520)
                      |.|..=||.-|+.||.+.++-+.-..+|=--+-+|...  ++-+.-|++-+....+.|+.+-+|++.|+..+-.+|.=|
T Consensus       402 EkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~ea--eea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~  478 (488)
T PF06548_consen  402 EKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREA--EEAASVAQERAMDAEQENEKAKKQIEKLKRKHKMEISTM  478 (488)
T ss_pred             HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556677799999999765433333332222222222  122233566677778889999999999999987766433

Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.31  E-value=44  Score=41.09  Aligned_cols=28  Identities=29%  Similarity=0.315  Sum_probs=20.7

Q ss_pred             HHHHHHhhhhhcHHHHHHHHHHhhcccc
Q 046111          325 AREEVNNLRHANDDLLKQVEGLQMNRFG  352 (520)
Q Consensus       325 a~eE~~~LR~~NEdL~kqVEqLq~dR~s  352 (520)
                      ++.|..-|-...+.+.+.||.|+..=-+
T Consensus       505 aesel~~L~~~~~~~~~~~e~lk~~L~~  532 (1293)
T KOG0996|consen  505 AESELDILLSRHETGLKKVEELKGKLLA  532 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777778888889999988765443

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=91.28  E-value=11  Score=34.25  Aligned_cols=71  Identities=21%  Similarity=0.343  Sum_probs=34.7

Q ss_pred             HHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHH
Q 046111          275 VKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGL  346 (520)
Q Consensus       275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqL  346 (520)
                      |..|..++.+++.....|+.+.......|+.++.....--..- ..-+..++.-+.-|..-|.=|-.|||-|
T Consensus        61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~l-e~e~~~~~~r~~dL~~QN~lLh~QlE~l  131 (132)
T PF07926_consen   61 LQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQL-EKELSELEQRIEDLNEQNKLLHDQLESL  131 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4445555555555555555555555555555554321111111 1112233444555556666666776654

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.27  E-value=34  Score=40.63  Aligned_cols=46  Identities=28%  Similarity=0.431  Sum_probs=25.5

Q ss_pred             hhcc-hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046111          164 YYGL-KEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQI  209 (520)
Q Consensus       164 y~~L-KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv  209 (520)
                      |||| ++|...+..|+.+.+.-+.|.+.|+.++..+.++...|.+++
T Consensus       662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~  708 (970)
T KOG0946|consen  662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQL  708 (970)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4544 555555555555555555566666555555555555554444

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=91.09  E-value=9.8  Score=42.80  Aligned_cols=100  Identities=18%  Similarity=0.222  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcc--hhhhhHH----HH--HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046111          140 LERLRSLVLELQEREVKLEGELLEYYGL--KEQESDI----VE--LQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQ  211 (520)
Q Consensus       140 I~~Lr~lVeeLqERE~~LE~eLLEy~~L--KEQEa~v----~E--Le~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e  211 (520)
                      ++.-+..|-.|+ -|.....+||..|.-  .|.+++.    +-  =+..-.....-.+.|..++..+++||.+|+..+..
T Consensus       106 v~~~~d~vvql~-hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~~~~~~~EaL~ekLk~~~een~~lr~k~~l  184 (596)
T KOG4360|consen  106 VDAPWDRVVQLG-HELSRKDELLRGYSAAIEESEAASVCSTPLVSNESRSAFQRELLEALQEKLKPLEEENTQLRSKAML  184 (596)
T ss_pred             hcchHHHHHHhh-hhhhhhhhhhheeeeccccccccccccCCCccCcchhhHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Confidence            444444443332 356667778887753  3332211    00  00001111234677888888888888888876654


Q ss_pred             ---------------HHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046111          212 ---------------SSYVKKELEVARNKIKELQRQIQLDANQT  240 (520)
Q Consensus       212 ---------------~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~  240 (520)
                                     |..+++||..+..+++-+++.|+....++
T Consensus       185 lk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el  228 (596)
T KOG4360|consen  185 LKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKEL  228 (596)
T ss_pred             HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           34678888888888888877666554443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=91.02  E-value=23  Score=37.24  Aligned_cols=55  Identities=33%  Similarity=0.384  Sum_probs=30.8

Q ss_pred             hhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCc
Q 046111          263 KKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMT  317 (520)
Q Consensus       263 ~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~  317 (520)
                      .-+.+++.+.+.+.+++.++.+++........++.++-..+..|+.........|
T Consensus       215 ~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t  269 (312)
T smart00787      215 KLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFT  269 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            3344455555555666666666666666666666666666666655444444444

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=90.99  E-value=16  Score=42.79  Aligned_cols=91  Identities=24%  Similarity=0.330  Sum_probs=65.5

Q ss_pred             hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046111          130 ETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQI  209 (520)
Q Consensus       130 ~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv  209 (520)
                      +.+.++-..++..+++.+..|++|=.-+|-+|---  ++  -..++++|..|.-...+.-+-..+-...++-.++|..++
T Consensus        97 E~~Lankda~lrq~eekn~slqerLelaE~~l~qs--~r--ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~  172 (916)
T KOG0249|consen   97 ENELANKDADLRQNEEKNRSLQERLELAEPKLQQS--LR--AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQL  172 (916)
T ss_pred             HHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhH--Hh--hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            34456667888899999999999876666666543  33  445788888888888888888888888887777777776


Q ss_pred             HhHHhHHHHHHHHHHHHH
Q 046111          210 AQSSYVKKELEVARNKIK  227 (520)
Q Consensus       210 ~e~~~v~~ELe~ar~Kir  227 (520)
                      .+..   .||..|+-+.+
T Consensus       173 qe~n---aeL~rarqree  187 (916)
T KOG0249|consen  173 EELN---AELQRARQREK  187 (916)
T ss_pred             HHHH---HHHHHHHHHHH
Confidence            6543   46666664443

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=90.83  E-value=17  Score=41.90  Aligned_cols=112  Identities=28%  Similarity=0.316  Sum_probs=70.8

Q ss_pred             hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 046111          168 KEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLL  247 (520)
Q Consensus       168 KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~L  247 (520)
                      .+.+..+..+..+|......+.........++.++..|++.+.       .+..++.+++.|+......-++    |..|
T Consensus       178 ~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~-------~~~~~~~~~~~l~~~~~~~~~~----i~~l  246 (670)
T KOG0239|consen  178 LKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG-------NYADLRRNIKPLEGLESTIKKK----IQAL  246 (670)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hhhhHHHhhhhhhhhhhHHHHH----HHHH
Confidence            3445567777777877788888888888888888888888776       4445555555555544433333    7777


Q ss_pred             HHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 046111          248 KQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAE  307 (520)
Q Consensus       248 kq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE  307 (520)
                      ++++..|+...                 ..|...+..+.+.+.+.....+.+...|..+.
T Consensus       247 ~~~l~~l~~~~-----------------~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  289 (670)
T KOG0239|consen  247 QQELEELKAEL-----------------KELNDQVSLLTREVQEALKESNTLQSDLESLE  289 (670)
T ss_pred             HHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777665553                 34555555555555555555566555555443

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=90.77  E-value=18  Score=35.61  Aligned_cols=29  Identities=10%  Similarity=0.228  Sum_probs=13.3

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhhhHHH
Q 046111          230 QRQIQLDANQTKGQLLLLKQQVSGLQAKE  258 (520)
Q Consensus       230 qkk~~~~a~q~K~qi~~Lkq~V~~Lq~~E  258 (520)
                      +..+-....+..+++..|+.+.-..+..+
T Consensus        56 e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~   84 (194)
T PF15619_consen   56 EAELPQLLQRHNEEVRVLRERLRKSQEQE   84 (194)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444555555544444444

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=90.69  E-value=1.7  Score=41.76  Aligned_cols=42  Identities=36%  Similarity=0.415  Sum_probs=29.4

Q ss_pred             HHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 046111          268 LEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESK  309 (520)
Q Consensus       268 ~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~  309 (520)
                      +..--..+++|+.++.|+.+.|..|+.|.--|-..+..+|.+
T Consensus       125 ~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k  166 (194)
T PF08614_consen  125 LAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEK  166 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444567888888888888888888887776666655443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.68  E-value=16  Score=41.75  Aligned_cols=174  Identities=26%  Similarity=0.336  Sum_probs=106.6

Q ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046111          134 ADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSS  213 (520)
Q Consensus       134 ~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~  213 (520)
                      ++.+.+=.+||.-+++++.||.+|   |-+|-.|.|-...+...=.-|.-..+|.+-|+-.|..|+++..=|-.++.+..
T Consensus       145 ~~~E~qR~rlr~elKe~KfRE~Rl---lseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~  221 (772)
T KOG0999|consen  145 AAVEDQRRRLRDELKEYKFREARL---LSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAI  221 (772)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667788999999999999998   66788888877777766667778888899999999999999988888877766


Q ss_pred             hHH----HHHHHHHHHH---HHHHHHHHHHHHhh--HHHHHHHHHHHhhhhH-HHHHHhh--hhHH------------HH
Q 046111          214 YVK----KELEVARNKI---KELQRQIQLDANQT--KGQLLLLKQQVSGLQA-KEEEAIK--KDVE------------LE  269 (520)
Q Consensus       214 ~v~----~ELe~ar~Ki---r~Lqkk~~~~a~q~--K~qi~~Lkq~V~~Lq~-~Eee~~~--~d~E------------~E  269 (520)
                      .++    ++||.|=.-+   |+-+.-++++..|.  ...+-.|-...-+|.. ..+..+.  +|++            +-
T Consensus       222 ~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n~e~~~~~n~l~~sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~  301 (772)
T KOG0999|consen  222 RLKEIAEKQLEEALETLQQEREQKNALKKELSQYRNAEDISSLNHLLFSLDGKFGEDGAEPNNDPEEEHGALKKLASDLF  301 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchhhhhhhhhhheecccccccccCCCCCChhhhcchhhhccchhh
Confidence            544    3444442111   12222233333332  2333333333334432 1111111  1222            00


Q ss_pred             HHHhh------HHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111          270 KKLKS------VKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI  310 (520)
Q Consensus       270 kKl~~------l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~  310 (520)
                      .-++-      ..-...|+.-|+......+-+|-+|+--|..++.++
T Consensus       302 tel~~p~sDl~sel~iseiqkLkqqL~smErek~~l~anL~dtqt~l  348 (772)
T KOG0999|consen  302 TELQGPVSDLFSELNISEIQKLKQQLMSMEREKAELLANLQDTQTQL  348 (772)
T ss_pred             hhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence            11100      123455666677777777888888888888887654

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=90.62  E-value=7.6  Score=38.59  Aligned_cols=93  Identities=31%  Similarity=0.294  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 046111          173 DIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVS  252 (520)
Q Consensus       173 ~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~  252 (520)
                      .+.+.-++|..--.||..|+       ..|+||+++=.++.-+.=-|.-.|.|.|.|-+.-|.-...|   +-+.++.|+
T Consensus        42 lm~evNrrlQ~hl~EIR~LK-------e~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryt---a~vmr~eV~  111 (195)
T PF10226_consen   42 LMKEVNRRLQQHLNEIRGLK-------EVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYT---ASVMRQEVA  111 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHH---HHHHHHHHH
Confidence            34444444444445555444       44555555555555555566678888888888877777666   445566666


Q ss_pred             hhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHH
Q 046111          253 GLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKEL  292 (520)
Q Consensus       253 ~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~L  292 (520)
                      ..+.                 .|++||..-.+|-+-|.+|
T Consensus       112 ~Y~~-----------------KL~eLE~kq~~L~rEN~eL  134 (195)
T PF10226_consen  112 QYQQ-----------------KLKELEDKQEELIRENLEL  134 (195)
T ss_pred             HHHH-----------------HHHHHHHHHHHHHHhHHHH
Confidence            5433                 3577887777777777665

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=90.56  E-value=38  Score=38.99  Aligned_cols=101  Identities=25%  Similarity=0.222  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc----c------hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH------
Q 046111          142 RLRSLVLELQEREVKLEGELLEYYG----L------KEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKL------  205 (520)
Q Consensus       142 ~Lr~lVeeLqERE~~LE~eLLEy~~----L------KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL------  205 (520)
                      -++..|+-|.+|=..++.++.+.-.    .      +++--.-..|.++....+.++..+..+|.+|+.-+..-      
T Consensus       142 ~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~  221 (629)
T KOG0963|consen  142 TQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFD  221 (629)
T ss_pred             hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            3344566666666666555554443    2      22222334556666666778888899999887654332      


Q ss_pred             ---------HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 046111          206 ---------QEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKG  242 (520)
Q Consensus       206 ---------~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~  242 (520)
                               -...+++..+..+|+.|..+|..|++.+.....|...
T Consensus       222 ~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~  267 (629)
T KOG0963|consen  222 LKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAK  267 (629)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                     2346788899999999999999999999988877753

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=90.48  E-value=26  Score=37.02  Aligned_cols=26  Identities=15%  Similarity=0.179  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046111          140 LERLRSLVLELQEREVKLEGELLEYY  165 (520)
Q Consensus       140 I~~Lr~lVeeLqERE~~LE~eLLEy~  165 (520)
                      +..|...+.+++.+=...+.+|-.|.
T Consensus       173 ~~fl~~ql~~~~~~l~~ae~~l~~fr  198 (444)
T TIGR03017       173 ALWFVQQIAALREDLARAQSKLSAYQ  198 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555556666666556666555554

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=90.48  E-value=1.1  Score=38.81  Aligned_cols=74  Identities=30%  Similarity=0.394  Sum_probs=58.0

Q ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhh------------hhHHHHHHHHHHHHHHH
Q 046111          134 ADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIK------------TVEIDMLNITINSLQAE  201 (520)
Q Consensus       134 ~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k------------~~Ei~~L~~kI~sLEsE  201 (520)
                      .....||..|+..+..|+..-..+.++=|+-+.++|    +..||.+|...            ..+|+.|..++..|+.+
T Consensus        15 e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~e----L~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~e   90 (100)
T PF01486_consen   15 EELQQEIAKLRKENESLQKELRHLMGEDLESLSLKE----LQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEE   90 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccccchHH----HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445789999999999999999999999888888544    66677766533            45667788888888888


Q ss_pred             HHHHHHHHHh
Q 046111          202 RKKLQEQIAQ  211 (520)
Q Consensus       202 n~RL~~qv~e  211 (520)
                      |..|+.++++
T Consensus        91 n~~L~~~~~e  100 (100)
T PF01486_consen   91 NNQLRQKIEE  100 (100)
T ss_pred             HHHHHHHhcC
Confidence            8888887754

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=90.44  E-value=42  Score=39.31  Aligned_cols=57  Identities=18%  Similarity=0.313  Sum_probs=35.4

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHH
Q 046111          202 RKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKE  258 (520)
Q Consensus       202 n~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~E  258 (520)
                      ..++...+.++..+..||...|.++..++.+...+..+-+..+-.|++++..++...
T Consensus       358 e~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~  414 (717)
T PF09730_consen  358 ECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSS  414 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344555555556666666666666666666666655566666777777777765543

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=90.27  E-value=4.8  Score=45.86  Aligned_cols=91  Identities=20%  Similarity=0.285  Sum_probs=61.8

Q ss_pred             hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHHHHHHH
Q 046111          132 EMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDM---LNITINSLQAERKKLQEQ  208 (520)
Q Consensus       132 ~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~---L~~kI~sLEsEn~RL~~q  208 (520)
                      +-..+..+|..|.++|+.|++.=..|+.++.++.      ..+..|+++|..-..++..   -+++|..++.++.+|+-.
T Consensus       416 ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k------~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~  489 (652)
T COG2433         416 EITVYEKRIKKLEETVERLEEENSELKRELEELK------REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKE  489 (652)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3445678899999999999999888888877665      5677788877755554442   455666777777777666


Q ss_pred             HHhHHhHHHHHHHHHHHHHH
Q 046111          209 IAQSSYVKKELEVARNKIKE  228 (520)
Q Consensus       209 v~e~~~v~~ELe~ar~Kir~  228 (520)
                      +.+-...+++|+.-=.+++.
T Consensus       490 L~e~~~~ve~L~~~l~~l~k  509 (652)
T COG2433         490 LEEKKKRVEELERKLAELRK  509 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66665555555544444433

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=90.25  E-value=38  Score=38.60  Aligned_cols=64  Identities=23%  Similarity=0.385  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhcchhh-hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111          147 VLELQEREVKLEGELLEYYGLKEQ-ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIA  210 (520)
Q Consensus       147 VeeLqERE~~LE~eLLEy~~LKEQ-Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~  210 (520)
                      .+.|+++-.+|+.-.-.|-.-=.| ...-+.+++-|+-.+.||..-...|+.|++++..|+.+|.
T Consensus       261 ~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie  325 (581)
T KOG0995|consen  261 EESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE  325 (581)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555544444332111 2233456667777777777777777788888877777664

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=90.11  E-value=5.4  Score=38.76  Aligned_cols=67  Identities=30%  Similarity=0.423  Sum_probs=50.8

Q ss_pred             HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHH
Q 046111          276 KDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGL  346 (520)
Q Consensus       276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqL  346 (520)
                      .+|+.++.+|...+.+|+.+..+|..+.+.++.+....-..    ...+-.+|+..|++.|..|..+++++
T Consensus       123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~----~~k~~~~ei~~lk~~~~ql~~~l~~~  189 (189)
T PF10211_consen  123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQE----EEKKHQEEIDFLKKQNQQLKAQLEQI  189 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            57788888888888888888888888888887665332221    22333789999999999999999864

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PRK12704 phosphodiesterase; Provisional

Probab=90.11  E-value=36  Score=38.07  Aligned_cols=93  Identities=24%  Similarity=0.346  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHH
Q 046111          222 ARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLV  301 (520)
Q Consensus       222 ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~  301 (520)
                      ++.++...+.+++.+.++-+.++   +++=..|..+++..-++...++++.+.+.   ..-.+|.+..++|+..+.++..
T Consensus        62 aeeE~~~~R~Ele~e~~~~e~~L---~qrE~rL~~Ree~Le~r~e~Lekke~eL~---~re~~Le~re~eLe~~~~~~~~  135 (520)
T PRK12704         62 AKEEIHKLRNEFEKELRERRNEL---QKLEKRLLQKEENLDRKLELLEKREEELE---KKEKELEQKQQELEKKEEELEE  135 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444433333332   22222234444443344444444443322   2223333444444444444444


Q ss_pred             hHHHHHHHHhhcCCCchhH
Q 046111          302 KLDAAESKIASLSNMTESE  320 (520)
Q Consensus       302 kL~~AE~~~~~lsnv~e~~  320 (520)
                      ........+..++++|.++
T Consensus       136 ~~~~~~~~l~~~a~lt~~e  154 (520)
T PRK12704        136 LIEEQLQELERISGLTAEE  154 (520)
T ss_pred             HHHHHHHHHHHHhCCCHHH
Confidence            4555555566678888655

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=90.07  E-value=46  Score=39.20  Aligned_cols=9  Identities=44%  Similarity=0.623  Sum_probs=3.8

Q ss_pred             HHHHHHHHh
Q 046111          339 LLKQVEGLQ  347 (520)
Q Consensus       339 L~kqVEqLq  347 (520)
                      +.++++.+.
T Consensus       731 ~~~~~~~~~  739 (908)
T COG0419         731 LKKELEKLE  739 (908)
T ss_pred             HHHHHHHHH
Confidence            444444443

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=89.86  E-value=29  Score=41.96  Aligned_cols=150  Identities=24%  Similarity=0.304  Sum_probs=82.6

Q ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111          133 MADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQS  212 (520)
Q Consensus       133 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~  212 (520)
                      .-|+..||++|++-|...+++.=-.-.           +..+.+.+.+...+...|+.+..+|..++.+-..|++...-.
T Consensus       406 lKd~~~EIerLK~dl~AaReKnGvyis-----------ee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~  474 (1041)
T KOG0243|consen  406 LKDLYEEIERLKRDLAAAREKNGVYIS-----------EERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQ  474 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhCceEec-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            456789999999999888776432211           222334555666667777777777777777777777655433


Q ss_pred             H----hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHH
Q 046111          213 S----YVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRK  288 (520)
Q Consensus       213 ~----~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~  288 (520)
                      .    .+.++++..+.++..--..+..    .+.++   ++-...|..++.- .......|.+      +..-+.+||+.
T Consensus       475 ~~~~~~l~~~~~~~k~~L~~~~~el~~----~~ee~---~~~~~~l~~~e~i-i~~~~~se~~------l~~~a~~l~~~  540 (1041)
T KOG0243|consen  475 LEIKELLKEEKEKLKSKLQNKNKELES----LKEEL---QQAKATLKEEEEI-ISQQEKSEEK------LVDRATKLRRS  540 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHHHHH-HHHHHHHHHH------HHHHHHHHHHH
Confidence            3    3333333333333222222211    11111   1222222223222 2222223323      23337889999


Q ss_pred             hHHHHHHHHHHHHhHHHHH
Q 046111          289 NKELQIEKRELLVKLDAAE  307 (520)
Q Consensus       289 Nk~LQ~EK~eL~~kL~~AE  307 (520)
                      +..-|.....|..||+.-.
T Consensus       541 ~~~s~~d~s~l~~kld~~~  559 (1041)
T KOG0243|consen  541 LEESQDDLSSLFEKLDRKD  559 (1041)
T ss_pred             HHHHHHHHHHHHHHhhhhh
Confidence            9999999999988888654

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=89.42  E-value=26  Score=35.40  Aligned_cols=73  Identities=25%  Similarity=0.214  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcch-hhhh-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046111          140 LERLRSLVLELQEREVKLEGELLEYYGLK-EQES-DIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQS  212 (520)
Q Consensus       140 I~~Lr~lVeeLqERE~~LE~eLLEy~~LK-EQEa-~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~  212 (520)
                      +..--.-|+.|+..=..|+.++-.+.+=+ .+.+ .-.-.+.+|..-...|+.+......|+.+...+..++.++
T Consensus        13 la~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~   87 (312)
T PF00038_consen   13 LASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDL   87 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHH
Confidence            44445567777888888888877777652 2221 2333455555555555555555555555555555444443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.40  E-value=59  Score=39.55  Aligned_cols=68  Identities=26%  Similarity=0.349  Sum_probs=50.3

Q ss_pred             hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHH
Q 046111          129 YETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITIN  196 (520)
Q Consensus       129 ~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~  196 (520)
                      |.+..++.-.+|..|.....+|+.-...|+.==-+..+|+-|-.....|+++|..+.-+..++...+.
T Consensus       665 s~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~  732 (1174)
T KOG0933|consen  665 SRSKGADLLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLE  732 (1174)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445666777888888888887777766655555666777777888888999888888888777665

>PF15294 Leu_zip: Leucine zipper

Probab=89.30  E-value=13  Score=38.90  Aligned_cols=133  Identities=29%  Similarity=0.346  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHh----HHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHhhhhHH
Q 046111          188 IDMLNITINSLQAERKKLQEQIAQSSY----VKKELEVARNKIKELQRQIQLDANQ------TKGQLLLLKQQVSGLQAK  257 (520)
Q Consensus       188 i~~L~~kI~sLEsEn~RL~~qv~e~~~----v~~ELe~ar~Kir~Lqkk~~~~a~q------~K~qi~~Lkq~V~~Lq~~  257 (520)
                      +..|++.|..|++||++|++.+..+..    +..|=......++.||. ++.....      .-+++.-|..+|+.++..
T Consensus       127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~-~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e  205 (278)
T PF15294_consen  127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD-EQGDQKGKKDLSFKAQDLSDLENKMAALKSE  205 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhccccccccccchhhHHHHHHHHHHH
Confidence            345899999999999999998875544    44455555566666666 3332222      225666777788777654


Q ss_pred             HHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHH----HHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhh
Q 046111          258 EEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEK----RELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLR  333 (520)
Q Consensus       258 Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK----~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR  333 (520)
                      =+..      +..+-...+.|+..+.-.+-....+|.+-    .+|..|+..    -+.+.||  -+|+.+-..++-.||
T Consensus       206 ~ek~------~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqq----T~ay~NM--k~~ltkKn~QiKeLR  273 (278)
T PF15294_consen  206 LEKA------LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQ----TAAYRNM--KEILTKKNEQIKELR  273 (278)
T ss_pred             HHHH------HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCc----cHHHHHh--HHHHHhccHHHHHHH
Confidence            2221      22222345667777777666666666652    244444442    2235565  455655445555544

>PRK10884 SH3 domain-containing protein; Provisional

Probab=89.05  E-value=8.6  Score=38.13  Aligned_cols=44  Identities=27%  Similarity=0.434  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 046111          188 IDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQ  234 (520)
Q Consensus       188 i~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~  234 (520)
                      +...+..|..|+.+|.+|..++..   +..+++.++.++..+++.+.
T Consensus       127 ~~~~~~~~~~L~~~n~~L~~~l~~---~~~~~~~l~~~~~~~~~~~~  170 (206)
T PRK10884        127 VAQSDSVINGLKEENQKLKNQLIV---AQKKVDAANLQLDDKQRTII  170 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            333566677789999988665544   34444444444444444443

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=89.04  E-value=54  Score=38.57  Aligned_cols=18  Identities=17%  Similarity=0.207  Sum_probs=11.7

Q ss_pred             cHHHHHHHHHHHHHHHHH
Q 046111          136 NARELERLRSLVLELQER  153 (520)
Q Consensus       136 ~~~EI~~Lr~lVeeLqER  153 (520)
                      ...|++.+...|.+|.+.
T Consensus       344 ~q~eLdK~~~~i~~Ln~~  361 (961)
T KOG4673|consen  344 VQLELDKTKKEIKMLNNA  361 (961)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            356777777777766543

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=88.79  E-value=0.59  Score=45.35  Aligned_cols=105  Identities=28%  Similarity=0.335  Sum_probs=63.0

Q ss_pred             HHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHH
Q 046111          249 QQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREE  328 (520)
Q Consensus       249 q~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE  328 (520)
                      +-|.+||++=..-.++|.+++.++..-+.|+..-.. +....+--..-.+...||+..+.+...|+.|  +   +-.++.
T Consensus        16 ~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~-~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qv--N---~lLReQ   89 (182)
T PF15035_consen   16 QLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQR-RRSEEEHSPDLEEALIRLEEEQQRSEELAQV--N---ALLREQ   89 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCcCccccc-ccccccCcccHHHHHHHHHHHHHhHHHHHHH--H---HHHHHH
Confidence            346677777666666777777766332111111111 1111111122223666777666666555544  3   334788


Q ss_pred             HHhhhhhcHHHHHHHHHHhhcccchhhHHHH
Q 046111          329 VNNLRHANDDLLKQVEGLQMNRFGEVEELVY  359 (520)
Q Consensus       329 ~~~LR~~NEdL~kqVEqLq~dR~seVEELVY  359 (520)
                      ....+.+|+.|...+..|..++-.-.+||-.
T Consensus        90 LEq~~~~N~~L~~dl~klt~~~~~l~~eL~~  120 (182)
T PF15035_consen   90 LEQARKANEALQEDLQKLTQDWERLRDELEQ  120 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999887777764

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=88.61  E-value=22  Score=33.60  Aligned_cols=112  Identities=27%  Similarity=0.297  Sum_probs=69.0

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHH
Q 046111          175 VELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDAN---QTKGQLLLLKQQV  251 (520)
Q Consensus       175 ~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~---q~K~qi~~Lkq~V  251 (520)
                      ...++.|+.-..+.+.|..+|.+|+++..-.+...   ..+..+.+-+++.|.-|+.++...+.   +-...+..|.   
T Consensus         6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~---e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~---   79 (140)
T PF10473_consen    6 LHVEEKLKESESEKDSLEDHVESLERELEMSQENK---ECLILDAENSKAEIETLEEELEELTSELNQLELELDTLR---   79 (140)
T ss_pred             HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            35677888889999999999999999988777543   34556666777777777666654332   2233333332   


Q ss_pred             hhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHH
Q 046111          252 SGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKREL  299 (520)
Q Consensus       252 ~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL  299 (520)
                          .....   -+.+++++-.+|.+||.-...+++....+..++..+
T Consensus        80 ----sEk~~---L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~  120 (140)
T PF10473_consen   80 ----SEKEN---LDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQL  120 (140)
T ss_pred             ----HHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence                11111   222345555556666666666666666666654444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=88.40  E-value=46  Score=37.03  Aligned_cols=36  Identities=19%  Similarity=0.298  Sum_probs=22.1

Q ss_pred             hcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 046111          165 YGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQA  200 (520)
Q Consensus       165 ~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEs  200 (520)
                      ..|+.+......|+..|.....+|..|...+....+
T Consensus       228 ~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~  263 (522)
T PF05701_consen  228 EELKEELEAAKDLESKLAEASAELESLQAELEAAKE  263 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555566666777777666666666666555444

Several sequences in this family are described as being myosin heavy chain-like.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.36  E-value=35  Score=35.53  Aligned_cols=55  Identities=22%  Similarity=0.296  Sum_probs=23.4

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111          181 LKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDAN  238 (520)
Q Consensus       181 L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~  238 (520)
                      |.....+|+.+..+|..++.++.+++.++.   .+.++++..+..|+..+..+...++
T Consensus        54 i~~L~~qi~~~~~k~~~~~~~i~~~~~eik---~l~~eI~~~~~~I~~r~~~l~~raR  108 (265)
T COG3883          54 IESLDNQIEEIQSKIDELQKEIDQSKAEIK---KLQKEIAELKENIVERQELLKKRAR  108 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333344444444444444433332   2344455555555555554444333

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=88.33  E-value=48  Score=37.09  Aligned_cols=15  Identities=20%  Similarity=0.454  Sum_probs=8.5

Q ss_pred             HHHHHhhcCCCchhH
Q 046111          306 AESKIASLSNMTESE  320 (520)
Q Consensus       306 AE~~~~~lsnv~e~~  320 (520)
                      ....+..++++|.++
T Consensus       134 ~~~~le~~a~lt~~e  148 (514)
T TIGR03319       134 QREELERISGLTQEE  148 (514)
T ss_pred             HHHHHHHHhCCCHHH
Confidence            334455567777554

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=88.25  E-value=71  Score=39.03  Aligned_cols=64  Identities=20%  Similarity=0.330  Sum_probs=38.2

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 046111          174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQE-QIAQSSYVKKELEVARNKIKELQRQIQLDA  237 (520)
Q Consensus       174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~-qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a  237 (520)
                      ..++..++......+..++.++..++......+. .+.++..-...+..|+..+..++..+....
T Consensus       308 ~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt  372 (1201)
T PF12128_consen  308 RDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLT  372 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            3445566666666677777777777777766654 455555555555555555555555444333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=88.05  E-value=49  Score=36.87  Aligned_cols=51  Identities=24%  Similarity=0.309  Sum_probs=23.8

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 046111          174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARN  224 (520)
Q Consensus       174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~  224 (520)
                      +..+++.|.....++..|+..+...+.=...|..--.....+..||..++.
T Consensus       213 ~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~  263 (522)
T PF05701_consen  213 AEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKE  263 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555543333333333333444444444444443

Several sequences in this family are described as being myosin heavy chain-like.

>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants

Probab=88.04  E-value=8.3  Score=41.05  Aligned_cols=58  Identities=24%  Similarity=0.322  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHH
Q 046111          195 INSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKE  258 (520)
Q Consensus       195 I~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~E  258 (520)
                      -..|+.+..++.+|+.++...+.++|      ..|-+|+-...+.=|+.|+.|++.+..++..+
T Consensus       153 nerL~~e~~~~~~qlE~~v~~K~~~E------~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~  210 (342)
T PF06632_consen  153 NERLESEANKLLKQLEKFVNAKEEHE------EDLYAKFVLVLNEKKAKIRELQRLLASAKEEE  210 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccc
Confidence            33444444555555555555555444      36888999999999999999999988877544

XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=87.93  E-value=61  Score=37.89  Aligned_cols=146  Identities=26%  Similarity=0.278  Sum_probs=79.0

Q ss_pred             HhhhcchhhhhH-HHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 046111          162 LEYYGLKEQESD-IVELQRQLK---IKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDA  237 (520)
Q Consensus       162 LEy~~LKEQEa~-v~ELe~~L~---~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a  237 (520)
                      -.|-.|+||... +.+|.....   .-..+-...+.++..|..+...|..++..+.....=+..--.++.+.-+.++...
T Consensus       461 sA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~  540 (698)
T KOG0978|consen  461 SAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNE  540 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence            345556666554 233333222   1123444566777777778888887777776665544433333333333333333


Q ss_pred             HhhHHHHHHHHHHHhhhhHHHHHHhh-----------hhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 046111          238 NQTKGQLLLLKQQVSGLQAKEEEAIK-----------KDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAA  306 (520)
Q Consensus       238 ~q~K~qi~~Lkq~V~~Lq~~Eee~~~-----------~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~A  306 (520)
                      ..-..++..+.+.+...+..=.++..           ....++.=-..+.+++.++.-++..+++||.|...|-+||...
T Consensus       541 ~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~  620 (698)
T KOG0978|consen  541 SKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL  620 (698)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33334444444433333333222222           2222222223467778888888888999999999998888854


Q ss_pred             H
Q 046111          307 E  307 (520)
Q Consensus       307 E  307 (520)
                      .
T Consensus       621 k  621 (698)
T KOG0978|consen  621 K  621 (698)
T ss_pred             c
Confidence            3

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=87.87  E-value=53  Score=37.09  Aligned_cols=189  Identities=18%  Similarity=0.248  Sum_probs=111.1

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 046111          173 DIVELQRQLKIKTVEIDMLNITINSLQAERK-------KLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLL  245 (520)
Q Consensus       173 ~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~-------RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~  245 (520)
                      .+..|+.++..+..||..|...+..|..+-.       .++.+.++--.+..||+....++..|.+-|..--..+.+-+.
T Consensus       331 ~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~  410 (622)
T COG5185         331 KLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFK  410 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHH
Confidence            3556777777888888888888888877643       466778888889999999999998888887654444444444


Q ss_pred             HHHHHHhhhhHHHHHHhhh----------------------------------hHH----HHHHHhh----HHhHHHHHH
Q 046111          246 LLKQQVSGLQAKEEEAIKK----------------------------------DVE----LEKKLKS----VKDLEVEVV  283 (520)
Q Consensus       246 ~Lkq~V~~Lq~~Eee~~~~----------------------------------d~E----~EkKl~~----l~~LE~Ev~  283 (520)
                      .|-..+-.+..--..+...                                  -.|    +.-....    -=.||.-+-
T Consensus       411 slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~  490 (622)
T COG5185         411 SLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIK  490 (622)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhh
Confidence            3333333322222111111                                  111    1111111    112666677


Q ss_pred             HHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHh---hcccchhhHHH--
Q 046111          284 ELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQ---MNRFGEVEELV--  358 (520)
Q Consensus       284 ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq---~dR~seVEELV--  358 (520)
                      ++.-...+|+.+.+-+..+|..|-+.....-        ..+.+|.++.|-+-|.|-+++-+|.   +.-..+.|++|  
T Consensus       491 ~~~~~i~El~~~l~~~e~~L~~a~s~~~~~k--------e~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs  562 (622)
T COG5185         491 NLKHDINELTQILEKLELELSEANSKFELSK--------EENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQS  562 (622)
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHH
Confidence            7777778888888888888887755431111        1233445555555556777776654   23334445443  


Q ss_pred             ----HHHHHHHHHHH
Q 046111          359 ----YLRWVNACLRY  369 (520)
Q Consensus       359 ----YLRWVNACLR~  369 (520)
                          -=+-.|+|-||
T Consensus       563 ~~i~ld~~~~~~n~~  577 (622)
T COG5185         563 TEIKLDELKVDLNRK  577 (622)
T ss_pred             HHhhHHHHHHHHHHH
Confidence                44667888765

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=87.77  E-value=22  Score=32.65  Aligned_cols=24  Identities=33%  Similarity=0.398  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhH
Q 046111          218 ELEVARNKIKELQRQIQLDANQTK  241 (520)
Q Consensus       218 ELe~ar~Kir~Lqkk~~~~a~q~K  241 (520)
                      ++..+..+.+.|+++++......|
T Consensus        88 e~~~~~~~~~~l~~~~~~~~~~~k  111 (151)
T PF11559_consen   88 ELASAEEKERQLQKQLKSLEAKLK  111 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445555555444443333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=87.52  E-value=65  Score=37.75  Aligned_cols=104  Identities=26%  Similarity=0.310  Sum_probs=64.1

Q ss_pred             hhhHHHHHHHhhHHhHHHHHHHHHHHhHHHH------HHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhc
Q 046111          263 KKDVELEKKLKSVKDLEVEVVELKRKNKELQ------IEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHAN  336 (520)
Q Consensus       263 ~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ------~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~N  336 (520)
                      ++..+++.....-+.=|+++.+|+....+=|      ..-.-.+-.|..++..+.-+-.+++.++ -..+...+..-..|
T Consensus       388 kks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev-~dLe~~l~~~~~~e  466 (786)
T PF05483_consen  388 KKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEV-HDLEIQLTTIKESE  466 (786)
T ss_pred             HhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHhh
Confidence            3444555444444455666888888776655      2223345667777777766655555443 45677888888888


Q ss_pred             HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 046111          337 DDLLKQVEGLQMNRFGEVEELVYLRWVNACLRY  369 (520)
Q Consensus       337 EdL~kqVEqLq~dR~seVEELVYLRWVNACLR~  369 (520)
                      -..++||+.|+.+=-.  |.|=|.--.=-|-.-
T Consensus       467 q~yskQVeeLKtELE~--EkLKN~ELt~~~nkL  497 (786)
T PF05483_consen  467 QHYSKQVEELKTELEQ--EKLKNTELTVNCNKL  497 (786)
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            8999999999873211  245555443344333

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=87.51  E-value=51  Score=36.51  Aligned_cols=54  Identities=24%  Similarity=0.180  Sum_probs=30.0

Q ss_pred             HHHHHHHhhhhhcHHHHHHHH-HHhhcccchhhHHHHHHHH-HHHHHHHHhhcCCCC
Q 046111          324 KAREEVNNLRHANDDLLKQVE-GLQMNRFGEVEELVYLRWV-NACLRYELRNYQAPA  378 (520)
Q Consensus       324 ~a~eE~~~LR~~NEdL~kqVE-qLq~dR~seVEELVYLRWV-NACLR~ELrn~~~p~  378 (520)
                      .+--|-+.|+--.|.|..++- .+..+|-+.+- ..|+.|+ +|-.|+.+--...|+
T Consensus       410 ~l~~ek~al~lqlErl~~~l~~~~~~~~~~~~~-~~~~~~~~d~~~r~~~~~~~~~~  465 (511)
T PF09787_consen  410 SLGSEKNALRLQLERLETQLKEEASNNRPSSIL-MKYSNSEDDAESRVPLLMKDSPH  465 (511)
T ss_pred             HHHhhhhhccccHHHHHHHHHhhccCCCCchhh-HhhccCCCchhhhhhhhccCCCc
Confidence            334456666666666666665 44445554432 2566664 366777664444443

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=87.25  E-value=27  Score=33.02  Aligned_cols=155  Identities=22%  Similarity=0.249  Sum_probs=88.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHH---------HHHHHHhhhhhHHHHHHHHHH----HHHHHH
Q 046111          136 NARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIV---------ELQRQLKIKTVEIDMLNITIN----SLQAER  202 (520)
Q Consensus       136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~---------ELe~~L~~k~~Ei~~L~~kI~----sLEsEn  202 (520)
                      -..+|..+|--.-.|+-.-.+++.+|-..-.|-|--..|-         .|-..+..++.|+-.|..++.    .|.--.
T Consensus         4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~k   83 (177)
T PF13870_consen    4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVK   83 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3557777777777778777788887777766666555443         344455556666666555543    233344


Q ss_pred             HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhH--HHHHHHhhHHhHHH
Q 046111          203 KKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDV--ELEKKLKSVKDLEV  280 (520)
Q Consensus       203 ~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~--E~EkKl~~l~~LE~  280 (520)
                      ++|..-..++..+..+|......+.    +++.+..+.+.+...++.+...|+.+..-.....-  +..+....+.+|+.
T Consensus        84 eKl~~~~~~~~~l~~~l~~~~~~~~----~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~  159 (177)
T PF13870_consen   84 EKLHFLSEELERLKQELKDREEELA----KLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRK  159 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444333333    33344455566666666666666555432211111  24556666777777


Q ss_pred             HHHHHHHHhHHHHH
Q 046111          281 EVVELKRKNKELQI  294 (520)
Q Consensus       281 Ev~ELRr~Nk~LQ~  294 (520)
                      .|..|++....|+.
T Consensus       160 ~i~~l~rk~~~l~~  173 (177)
T PF13870_consen  160 EIKELERKVEILEM  173 (177)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777776654

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.03  E-value=39  Score=38.63  Aligned_cols=143  Identities=21%  Similarity=0.324  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHH-HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH----HHhhhhHH
Q 046111          193 ITINSLQAERKKLQ-EQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEE----EAIKKDVE  267 (520)
Q Consensus       193 ~kI~sLEsEn~RL~-~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Ee----e~~~~d~E  267 (520)
                      .+|..|-....|=+ +...++..-.+|+...+.+|..||+    +.....+++.-||+..+.|.+...    +....+..
T Consensus       313 r~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~----~l~eke~sl~dlkehassLas~glk~ds~Lk~leIa  388 (654)
T KOG4809|consen  313 RIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQA----ELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIA  388 (654)
T ss_pred             HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence            34444444333322 2233333344444444444444444    445556778888888888877653    23334555


Q ss_pred             HHHHHhhHHhHHHHHHHHHHHhHH--HHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHH
Q 046111          268 LEKKLKSVKDLEVEVVELKRKNKE--LQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEG  345 (520)
Q Consensus       268 ~EkKl~~l~~LE~Ev~ELRr~Nk~--LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEq  345 (520)
                      +|.|-..|.+||...+--.....+  .--+-.++...|+-+-..+        .+...+|..++..|    =.+++|||+
T Consensus       389 lEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y--------~de~~kaqaevdrl----Leilkeven  456 (654)
T KOG4809|consen  389 LEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYY--------RDECGKAQAEVDRL----LEILKEVEN  456 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH----HHHHHHHHh
Confidence            666666666666543322211111  1123344444455443322        23333444555543    348999999


Q ss_pred             Hhhccc
Q 046111          346 LQMNRF  351 (520)
Q Consensus       346 Lq~dR~  351 (520)
                      +++|--
T Consensus       457 eKnDkd  462 (654)
T KOG4809|consen  457 EKNDKD  462 (654)
T ss_pred             hhcccc
Confidence            988743

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=86.73  E-value=40  Score=41.05  Aligned_cols=42  Identities=19%  Similarity=0.409  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 046111          193 ITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQ  234 (520)
Q Consensus       193 ~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~  234 (520)
                      ..+..|-....||..++.++..-..++.....++.-|..+++
T Consensus       652 k~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~  693 (1141)
T KOG0018|consen  652 KEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIHGLEMRLK  693 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            445555555666666666666655566666666666666655

>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.57  E-value=26  Score=39.30  Aligned_cols=110  Identities=26%  Similarity=0.329  Sum_probs=78.1

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 046111          174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSG  253 (520)
Q Consensus       174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~  253 (520)
                      -.+|..+|+....+++..+..|..+.+...+|+   ..+...+..++.+|.|..+|.++|=+.+-+    +..|+.+=-.
T Consensus       336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq---k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ik----qeilr~~G~~  408 (508)
T KOG3091|consen  336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQ---KHHADAVAKIEEAKNRHVELSHRILRVMIK----QEILRKRGYA  408 (508)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhccCCc
Confidence            357999999999999999999999999999999   777888888999999999999998765432    2233333334


Q ss_pred             hhHHHHHHhhhhHHHHHHHhhH-HhHHHHHHHHHHHhHHHHHHHHH
Q 046111          254 LQAKEEEAIKKDVELEKKLKSV-KDLEVEVVELKRKNKELQIEKRE  298 (520)
Q Consensus       254 Lq~~Eee~~~~d~E~EkKl~~l-~~LE~Ev~ELRr~Nk~LQ~EK~e  298 (520)
                      |...|++       +..|++.| +.|..= .|+++....|...-+-
T Consensus       409 L~~~EE~-------Lr~Kldtll~~ln~P-nq~k~Rl~~L~e~~r~  446 (508)
T KOG3091|consen  409 LTPDEEE-------LRAKLDTLLAQLNAP-NQLKARLDELYEILRM  446 (508)
T ss_pred             CCccHHH-------HHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHh
Confidence            5555544       55555543 223332 6777777776655443

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=86.31  E-value=21  Score=41.79  Aligned_cols=70  Identities=21%  Similarity=0.168  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHhhhcchhhh---hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 046111          151 QEREVKLEGELLEYYGLKEQE---SDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVAR  223 (520)
Q Consensus       151 qERE~~LE~eLLEy~~LKEQE---a~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar  223 (520)
                      .+|-..++..|+---+  |--   -..-+||++|+.+.+.+.-+..+..+|+..-.-++.++....+ .+-|..+.
T Consensus        69 E~ritt~e~rflnaqr--e~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeve  141 (916)
T KOG0249|consen   69 EERITTLEKRFLNAQR--ESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVE  141 (916)
T ss_pred             ccccchHHHHHHhccC--CCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhH
Confidence            3455556666654332  222   1367899999999999998888888888888877777777666 44344433

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=86.17  E-value=54  Score=35.41  Aligned_cols=27  Identities=11%  Similarity=0.131  Sum_probs=22.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111          136 NARELERLRSLVLELQEREVKLEGELL  162 (520)
Q Consensus       136 ~~~EI~~Lr~lVeeLqERE~~LE~eLL  162 (520)
                      +..++..|+..+..|+.+..+|+.++-
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~rL~a~~~  121 (457)
T TIGR01000        95 EENQKQLLEQQLDNLKDQKKSLDTLKQ  121 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888888888888888888887764

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=86.13  E-value=63  Score=36.17  Aligned_cols=29  Identities=24%  Similarity=0.294  Sum_probs=24.2

Q ss_pred             HhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111          276 KDLEVEVVELKRKNKELQIEKRELLVKLD  304 (520)
Q Consensus       276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~  304 (520)
                      ..|..++..|...|.++..|-..|+.=|-
T Consensus       168 ~~L~~qi~~L~~~n~~i~~ea~nLt~ALk  196 (475)
T PRK10361        168 HTLAHEIRNLQQLNAQMAQEAINLTRALK  196 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            56888889999999999999888877664

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=86.00  E-value=30  Score=32.37  Aligned_cols=37  Identities=35%  Similarity=0.324  Sum_probs=23.7

Q ss_pred             hHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111          274 SVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI  310 (520)
Q Consensus       274 ~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~  310 (520)
                      +|+-||.++.......+.....-++.-++.+..+-++
T Consensus        81 riq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv  117 (143)
T PF12718_consen   81 RIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKV  117 (143)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3566787777777777666666666666655554443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PLN02939 transferase, transferring glycosyl groups

Probab=85.73  E-value=73  Score=38.61  Aligned_cols=154  Identities=19%  Similarity=0.284  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh-----------hhHHHHHHHHHhhhhh--------HHHHHHHHHHH
Q 046111          137 ARELERLRSLVLELQEREVKLEGELLEYYGLKEQ-----------ESDIVELQRQLKIKTV--------EIDMLNITINS  197 (520)
Q Consensus       137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQ-----------Ea~v~ELe~~L~~k~~--------Ei~~L~~kI~s  197 (520)
                      ..|+..||.-=-.|++--.-|..+|-+...--|.           ++.+.+||..+.+...        +++.+-.|++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (977)
T PLN02939        225 SKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVEN  304 (977)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHH
Confidence            3444444444444444444444444444332222           3456666666554433        33556667777


Q ss_pred             HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhh
Q 046111          198 LQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQ---TKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKS  274 (520)
Q Consensus       198 LEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q---~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~  274 (520)
                      ||.=..+.-.|+.....+..+-...+.|+..|..-+.. ++-   .-.-+..++|+|..++..   ..+++.++..-+  
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--  378 (977)
T PLN02939        305 LQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKE-ANVSKFSSYKVELLQQKLKLLEER---LQASDHEIHSYI--  378 (977)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-hhHhhhhHHHHHHHHHHHHHHHHH---HHhhHHHHHHHH--
Confidence            77777777777777666666555555555555544431 111   123445667777665544   344666665443  


Q ss_pred             HHhHHHHHHHHHHHhHHHHHHHH
Q 046111          275 VKDLEVEVVELKRKNKELQIEKR  297 (520)
Q Consensus       275 l~~LE~Ev~ELRr~Nk~LQ~EK~  297 (520)
                       +--..++.|++.+.+.|-.|..
T Consensus       379 -~~~~~~~~~~~~~~~~~~~~~~  400 (977)
T PLN02939        379 -QLYQESIKEFQDTLSKLKEESK  400 (977)
T ss_pred             -HHHHHHHHHHHHHHHHHHhhhh
Confidence             4466778888888887766643

>TIGR00634 recN DNA repair protein RecN

Probab=85.46  E-value=66  Score=35.84  Aligned_cols=170  Identities=15%  Similarity=0.159  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH---H-HHHHHH
Q 046111          137 ARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIK---TVEIDMLNITINSLQAER---K-KLQEQI  209 (520)
Q Consensus       137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k---~~Ei~~L~~kI~sLEsEn---~-RL~~qv  209 (520)
                      ..++..++.-..++++|-..|+.++-|...+.=+.....+|+.+...-   ..=...+..-...|..+.   . ..-+.+
T Consensus       174 ~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l  253 (563)
T TIGR00634       174 RQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNALAALRGDVDVQEGSLLEGL  253 (563)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHHHHHHHhCCccccccCHHHHH
Confidence            445555555555666666666777777766666656666666655421   111222333333342210   0 011111


Q ss_pred             H------------hHHhHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHhhhhHH-------HHHHhhhhHH
Q 046111          210 A------------QSSYVKKELEVARNKIKELQRQIQLDA---NQTKGQLLLLKQQVSGLQAK-------EEEAIKKDVE  267 (520)
Q Consensus       210 ~------------e~~~v~~ELe~ar~Kir~Lqkk~~~~a---~q~K~qi~~Lkq~V~~Lq~~-------Eee~~~~d~E  267 (520)
                      .            .+..+...|+.+...+.++...++...   .-.-+.+..+.+++..++.-       -.+....-.+
T Consensus       254 ~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~  333 (563)
T TIGR00634       254 GEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEK  333 (563)
T ss_pred             HHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            1            112222233333333333333333311   11223344444444444432       2334444455


Q ss_pred             HHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 046111          268 LEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAA  306 (520)
Q Consensus       268 ~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~A  306 (520)
                      +++++..+...+.++.+|+.....++.+-.+++.+|..+
T Consensus       334 l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~  372 (563)
T TIGR00634       334 IKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLI  372 (563)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555555555555544

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=84.89  E-value=43  Score=33.17  Aligned_cols=59  Identities=24%  Similarity=0.303  Sum_probs=34.4

Q ss_pred             CCcchhhHHhhccc----cc-----cCCCCcccchhhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 046111           97 EDILPEFEDLLSGE----IE-----YQLPIDKFDEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYG  166 (520)
Q Consensus        97 ~~llpef~~l~~~~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~  166 (520)
                      .+|--||+.+-+|.    ||     +|.|.....         ........-|.......+-+.-|-.+|  +||.=||
T Consensus        63 ~~l~~E~~R~~~~~~~~~lD~sRY~l~~p~~~~~---------~d~~~w~~al~na~a~lehq~~R~~NL--eLl~~~g  130 (221)
T PF05700_consen   63 PLLQAELERVASGEPMQGLDMSRYELPPPPSGKS---------NDVEAWKEALDNAYAQLEHQRLRLENL--ELLSKYG  130 (221)
T ss_pred             hhHHHHHHHHHcCCCCCccCHHhcCCCCCCCCCc---------ccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence            67778888887772    33     222221110         011122345666777777777787777  5788888

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=84.70  E-value=99  Score=37.18  Aligned_cols=145  Identities=21%  Similarity=0.242  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 046111          151 QEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQ  230 (520)
Q Consensus       151 qERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lq  230 (520)
                      -+++..|-.++-=+--||-.-+.+.|.---|.+-+.+|   ..+...|++-|.+|..++++...+++++...=.-++--.
T Consensus       231 l~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~i---eE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~  307 (1265)
T KOG0976|consen  231 LKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEI---EEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTR  307 (1265)
T ss_pred             HHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            34566666665555555655555555555554444333   346667777788888888777777666543322222111


Q ss_pred             HH-----------HHHHHHhhHHHHHHHHH-------HHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHH
Q 046111          231 RQ-----------IQLDANQTKGQLLLLKQ-------QVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKEL  292 (520)
Q Consensus       231 kk-----------~~~~a~q~K~qi~~Lkq-------~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~L  292 (520)
                      .+           +..+...-++|++.|+|       ++.+|..+-.+.-+..+++.....+|+++-.-|+++.+....|
T Consensus       308 t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l  387 (1265)
T KOG0976|consen  308 TRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLEL  387 (1265)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            11           11222223455555554       4667777777777777788888888877766677777777766


Q ss_pred             HHHHHH
Q 046111          293 QIEKRE  298 (520)
Q Consensus       293 Q~EK~e  298 (520)
                      |.+..+
T Consensus       388 ~aerqe  393 (1265)
T KOG0976|consen  388 QAERQE  393 (1265)
T ss_pred             HHHHHH
Confidence            655433

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=84.66  E-value=36  Score=34.40  Aligned_cols=70  Identities=26%  Similarity=0.314  Sum_probs=33.5

Q ss_pred             HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcccchhh
Q 046111          276 KDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVE  355 (520)
Q Consensus       276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~seVE  355 (520)
                      .+++.+...|+......+.++..|..++..++..|.            .+.++....-...+.|..+++..|.+.-.-.+
T Consensus        57 ~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~------------~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~  124 (246)
T PF00769_consen   57 QEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIA------------RLEEESERKEEEAEELQEELEEAREDEEEAKE  124 (246)
T ss_dssp             HHHHHHHHHHHH------------HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888888888888889999999888888876552            22233333333334455566655555444444


Q ss_pred             HH
Q 046111          356 EL  357 (520)
Q Consensus       356 EL  357 (520)
                      +|
T Consensus       125 ~L  126 (246)
T PF00769_consen  125 EL  126 (246)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]

Probab=84.31  E-value=11  Score=38.24  Aligned_cols=64  Identities=31%  Similarity=0.389  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHH-HHHHHHHHhhhhhcHHHHHHHHHH
Q 046111          278 LEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKV-AKAREEVNNLRHANDDLLKQVEGL  346 (520)
Q Consensus       278 LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~V-a~a~eE~~~LR~~NEdL~kqVEqL  346 (520)
                      ++.++..|.-.+++|+....++..|+++++.+-+..     -.++ .+.++++..|..+|--|..|+|+.
T Consensus       190 ~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~-----r~ieEkk~~eei~fLk~tN~qLKaQLegI  254 (259)
T KOG4001|consen  190 ATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEE-----REIEEKKMKEEIEFLKETNRQLKAQLEGI  254 (259)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            556667777778888888888888999888653211     1233 456899999999999999999985

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=84.02  E-value=28  Score=37.32  Aligned_cols=128  Identities=17%  Similarity=0.192  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 046111          153 REVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAE-RKKLQEQIAQSSYVKKELEVARNKIKELQR  231 (520)
Q Consensus       153 RE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsE-n~RL~~qv~e~~~v~~ELe~ar~Kir~Lqk  231 (520)
                      +.+|.-.+-+.-+. +.=....++...+|.--..+|..--.+|.+-|.- |..|+..+.+|..+..+|..++.+.+.+..
T Consensus       216 kDWR~hleqm~~~~-~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~  294 (359)
T PF10498_consen  216 KDWRSHLEQMKQHK-KSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASE  294 (359)
T ss_pred             chHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45554444333322 1223446777777777778888877888887765 778999999999999999999999999988


Q ss_pred             HHHHHHHhhH---HHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHH
Q 046111          232 QIQLDANQTK---GQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVEL  285 (520)
Q Consensus       232 k~~~~a~q~K---~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~EL  285 (520)
                      -|....+.-.   +++..+|+++   +.++..+...-+=+..| ++|..|..|+.+|
T Consensus       295 ~V~~~t~~L~~IseeLe~vK~em---eerg~~mtD~sPlv~IK-qAl~kLk~EI~qM  347 (359)
T PF10498_consen  295 GVSERTRELAEISEELEQVKQEM---EERGSSMTDGSPLVKIK-QALTKLKQEIKQM  347 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCCCCCHHHHHH-HHHHHHHHHHHHh
Confidence            8776554433   3444444433   33554444444422222 3444555555444

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=83.99  E-value=79  Score=35.51  Aligned_cols=218  Identities=17%  Similarity=0.231  Sum_probs=112.5

Q ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHHHHH
Q 046111          133 MADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVE----IDMLNITINSLQAERKKLQEQ  208 (520)
Q Consensus       133 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~E----i~~L~~kI~sLEsEn~RL~~q  208 (520)
                      .+..+.+|..++.-+.+|.+.|..-..+..+...      ...+|.+.|......    ++.|...+..++.+-..+.+.
T Consensus       110 l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~------~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~l  183 (560)
T PF06160_consen  110 LDEIEEDIKEILDELDELLESEEKNREEIEELKE------KYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEEL  183 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence            3444566666666666666666655555444332      345555666555543    344666666666666666653


Q ss_pred             HH--hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhh-----hHHHHHHHhhHHhHHHH
Q 046111          209 IA--QSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKK-----DVELEKKLKSVKDLEVE  281 (520)
Q Consensus       209 v~--e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~-----d~E~EkKl~~l~~LE~E  281 (520)
                      ..  ++..+.+.|..++..+..|...|...=.=-+.=-..+-.|+..|+..=.++...     +.++.+.   ++.++..
T Consensus       184 t~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~---i~~i~~~  260 (560)
T PF06160_consen  184 TENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEE---IEQIEEQ  260 (560)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHH---HHHHHHH
Confidence            33  467777888888888888887776543333322223334444444333222221     1122222   2333333


Q ss_pred             H------------HHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhc
Q 046111          282 V------------VELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMN  349 (520)
Q Consensus       282 v------------~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~d  349 (520)
                      +            .+.+..|..++.+...|-..|+.   -+.+-..|  ..-...+..-++.++..|..|..+++.|+.+
T Consensus       261 l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~---E~~Ak~~V--~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~s  335 (560)
T PF06160_consen  261 LEEALALLKNLELDEVEEENEEIEERIDQLYDILEK---EVEAKKYV--EKNLKELYEYLEHAKEQNKELKEELERVSQS  335 (560)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3            33444444444444444333321   11111111  1112233466778888888899999999877


Q ss_pred             ccchhhHHHHHHHHH
Q 046111          350 RFGEVEELVYLRWVN  364 (520)
Q Consensus       350 R~seVEELVYLRWVN  364 (520)
                      .-=.=.|+--.|=++
T Consensus       336 Y~L~~~e~~~~~~l~  350 (560)
T PF06160_consen  336 YTLNHNELEIVRELE  350 (560)
T ss_pred             cCCCchHHHHHHHHH
Confidence            644444443333333

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=83.82  E-value=17  Score=30.72  Aligned_cols=60  Identities=15%  Similarity=0.346  Sum_probs=36.1

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----hHHhHHHHHHHHHHHHHHHHHHH
Q 046111          174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIA----QSSYVKKELEVARNKIKELQRQI  233 (520)
Q Consensus       174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~----e~~~v~~ELe~ar~Kir~Lqkk~  233 (520)
                      .-.||..+...-..|..|.++|..|+.+|..|.++-.    +...++.+...|..+|+-|=.|+
T Consensus         6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl   69 (72)
T PF06005_consen    6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL   69 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4567777777777777777777777777776663332    22334455555555555554444

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=83.66  E-value=46  Score=32.52  Aligned_cols=150  Identities=23%  Similarity=0.234  Sum_probs=86.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 046111          136 NARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYV  215 (520)
Q Consensus       136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v  215 (520)
                      ..+-|..|..-|..++.|=..|+.++..--.|--.... ..      ....-.-.|...+..|++|..|-..-..-...+
T Consensus        14 qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~-~~------~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lL   86 (182)
T PF15035_consen   14 QAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQR-RR------SEEEHSPDLEEALIRLEEEQQRSEELAQVNALL   86 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCccccc-cc------ccccCcccHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            35556677777777766666666666211000000000 00      000002234448899999999999988888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHH
Q 046111          216 KKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIE  295 (520)
Q Consensus       216 ~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~E  295 (520)
                      +++|+.++..+..|..-+.+...+-..=-.-|..+=..++..++....-   +..-=.++=.|=-+|+-+||.-.+|...
T Consensus        87 ReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y---~~~eh~rll~LWr~v~~lRr~f~elr~~  163 (182)
T PF15035_consen   87 REQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQY---LSSEHSRLLSLWREVVALRRQFAELRTA  163 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998877655544332222233334444444332111   1111223455667888888888877654

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=83.58  E-value=57  Score=33.58  Aligned_cols=29  Identities=28%  Similarity=0.313  Sum_probs=21.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046111          135 DNARELERLRSLVLELQEREVKLEGELLE  163 (520)
Q Consensus       135 ~~~~EI~~Lr~lVeeLqERE~~LE~eLLE  163 (520)
                      .+..++..|+..+..|+.+-.+|+..+-.
T Consensus        78 ~~~~~l~~l~~~~~~l~a~~~~l~~~~~~  106 (423)
T TIGR01843        78 DVEADAAELESQVLRLEAEVARLRAEADS  106 (423)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            35778888888888888777777665543

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=83.41  E-value=17  Score=36.08  Aligned_cols=17  Identities=24%  Similarity=0.264  Sum_probs=7.1

Q ss_pred             HHHHHHHhHHHHHHHHH
Q 046111          282 VVELKRKNKELQIEKRE  298 (520)
Q Consensus       282 v~ELRr~Nk~LQ~EK~e  298 (520)
                      +.+|+..|.+|+.+...
T Consensus       134 ~~~L~~~n~~L~~~l~~  150 (206)
T PRK10884        134 INGLKEENQKLKNQLIV  150 (206)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444444444433333

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=82.94  E-value=65  Score=33.70  Aligned_cols=121  Identities=26%  Similarity=0.303  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHH-HHHH-HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-------hhhhHHH
Q 046111          188 IDMLNITINSLQAER-KKLQ-EQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQV-------SGLQAKE  258 (520)
Q Consensus       188 i~~L~~kI~sLEsEn-~RL~-~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V-------~~Lq~~E  258 (520)
                      ++.|..-|.-|+.-+ +.|. +.+.+...++..|+.|+-++.=|+.++...++. ++....-...+       ..+....
T Consensus       128 Le~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea-~e~~~~~~~~e~eke~~~r~l~~~~  206 (269)
T PF05278_consen  128 LECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEA-KEIYDQHETREEEKEEKDRKLELKK  206 (269)
T ss_pred             HHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555565432 4444 467777778888888887777777777654432 11111111111       1111122


Q ss_pred             HHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 046111          259 EEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESK  309 (520)
Q Consensus       259 ee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~  309 (520)
                      .+.-....++.++-+.++++-..+.|+|....+|+++-..|...+..+.++
T Consensus       207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sK  257 (269)
T PF05278_consen  207 EELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSK  257 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222233333334444455555555555555555555555544444443

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=82.92  E-value=51  Score=32.47  Aligned_cols=25  Identities=32%  Similarity=0.375  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q 046111          140 LERLRSLVLELQEREVKLEGELLEY  164 (520)
Q Consensus       140 I~~Lr~lVeeLqERE~~LE~eLLEy  164 (520)
                      +..++..+..++..-..|..++-+.
T Consensus        22 L~~~~~~l~~~~~~~~~l~~~i~~~   46 (302)
T PF10186_consen   22 LLELRSELQQLKEENEELRRRIEEI   46 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556666666655555555554443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=82.83  E-value=18  Score=33.92  Aligned_cols=83  Identities=29%  Similarity=0.426  Sum_probs=47.7

Q ss_pred             HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcccc---
Q 046111          276 KDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFG---  352 (520)
Q Consensus       276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~s---  352 (520)
                      .+|..++.+|+..+.+|+.+...|...|...      .+..|.+++    ...+..|...++.|...++.|+.++..   
T Consensus        75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L------~~~~t~~el----~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~  144 (169)
T PF07106_consen   75 AELDAEIKELREELAELKKEVKSLEAELASL------SSEPTNEEL----REEIEELEEEIEELEEKLEKLRSGSKPVSP  144 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            3344444444444444444444443333322      223333443    456888888889999999999987655   


Q ss_pred             -hhhHH--HHHHHHHHHHH
Q 046111          353 -EVEEL--VYLRWVNACLR  368 (520)
Q Consensus       353 -eVEEL--VYLRWVNACLR  368 (520)
                       +++.+  -|-+|...|-.
T Consensus       145 ee~~~~~~~~~~~~k~w~k  163 (169)
T PF07106_consen  145 EEKEKLEKEYKKWRKEWKK  163 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence             23322  37788877754

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=82.77  E-value=30  Score=32.97  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 046111          216 KKELEVARNKIKELQRQIQLDANQTKGQLLLLK  248 (520)
Q Consensus       216 ~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lk  248 (520)
                      +.+......||.++..|+..+...-|.+|..+|
T Consensus       119 r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K  151 (177)
T PF07798_consen  119 REEQAKQELKIQELNNKIDTEIANLRTEIESLK  151 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444333

>TIGR00634 recN DNA repair protein RecN

Probab=82.52  E-value=88  Score=34.92  Aligned_cols=79  Identities=15%  Similarity=0.257  Sum_probs=44.0

Q ss_pred             HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcccchhh
Q 046111          276 KDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVE  355 (520)
Q Consensus       276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~seVE  355 (520)
                      .+++.....+++.....-....++...++..+.++..+.+.  ++-++..+++...++..=.++..++=..+..-+...+
T Consensus       304 ~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~--~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~  381 (563)
T TIGR00634       304 NEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDS--DESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLA  381 (563)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444433444433333335556777777777777666665  3344556666777666666666666666555554444


Q ss_pred             H
Q 046111          356 E  356 (520)
Q Consensus       356 E  356 (520)
                      +
T Consensus       382 ~  382 (563)
T TIGR00634       382 K  382 (563)
T ss_pred             H
Confidence            3

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=82.51  E-value=90  Score=35.07  Aligned_cols=69  Identities=20%  Similarity=0.266  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchh-----HHHHHHHHHHHhhhhhcHHHHHHHHHH
Q 046111          278 LEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTES-----EKVAKAREEVNNLRHANDDLLKQVEGL  346 (520)
Q Consensus       278 LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~-----~~Va~a~eE~~~LR~~NEdL~kqVEqL  346 (520)
                      ...++..|.....+.......+...|..|+..+..+..-|.+     .++..+-+=+|+.|..|+++...+.+-
T Consensus       449 ~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYaNRYR~~~~~v~~al~~A  522 (560)
T PF06160_consen  449 VSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQYANRYRSDNPEVDEALTEA  522 (560)
T ss_pred             HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence            334444444444444455566666777777766655554422     244445566788888888887777654

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PRK00106 hypothetical protein; Provisional

Probab=82.30  E-value=96  Score=35.21  Aligned_cols=37  Identities=11%  Similarity=0.275  Sum_probs=19.0

Q ss_pred             HHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhH
Q 046111          284 ELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESE  320 (520)
Q Consensus       284 ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~  320 (520)
                      +|.....+|+..+.++..........+..++.+|.++
T Consensus       133 eLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~e  169 (535)
T PRK00106        133 SLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAE  169 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            3334444444444444444444445566677777555

>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function

Probab=82.20  E-value=2.2  Score=39.84  Aligned_cols=38  Identities=29%  Similarity=0.440  Sum_probs=35.5

Q ss_pred             hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 046111          171 ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQ  208 (520)
Q Consensus       171 Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~q  208 (520)
                      |+.+..|+.++..|.+||..|+.++..+...|.+|...
T Consensus        93 E~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr  130 (131)
T PF04859_consen   93 EIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR  130 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            68899999999999999999999999999999999754

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=82.19  E-value=13  Score=34.89  Aligned_cols=64  Identities=27%  Similarity=0.355  Sum_probs=48.2

Q ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 046111          133 MADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQA  200 (520)
Q Consensus       133 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEs  200 (520)
                      ...+..+|..|+..+.+|+.....|+.+|-.+..    .....+|...+..-..++..+..++..|++
T Consensus        74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~----~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   74 LAELDAEIKELREELAELKKEVKSLEAELASLSS----EPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4445778999999999999999999999988877    555666666666666666666666666655

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=82.18  E-value=1.3e+02  Score=36.71  Aligned_cols=32  Identities=41%  Similarity=0.453  Sum_probs=17.7

Q ss_pred             hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111          130 ETEMADNARELERLRSLVLELQEREVKLEGEL  161 (520)
Q Consensus       130 ~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eL  161 (520)
                      +++.|-..+|+..-..-+.+|+++|..|+.-+
T Consensus       166 eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~  197 (1072)
T KOG0979|consen  166 ETEKAIGAEELLQYHIELMDLREDEKSLEDKL  197 (1072)
T ss_pred             HHHHhcCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555556666666665543

>PRK11281 hypothetical protein; Provisional

Probab=81.49  E-value=1.4e+02  Score=36.71  Aligned_cols=28  Identities=18%  Similarity=0.226  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046111          137 ARELERLRSLVLELQEREVKLEGELLEY  164 (520)
Q Consensus       137 ~~EI~~Lr~lVeeLqERE~~LE~eLLEy  164 (520)
                      ..+.+.|+..+....++=.....+|.++
T Consensus        79 ~~~~~~L~k~l~~Ap~~l~~a~~~Le~L  106 (1113)
T PRK11281         79 KEETEQLKQQLAQAPAKLRQAQAELEAL  106 (1113)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            4445555555555555444444444443

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=81.49  E-value=30  Score=36.19  Aligned_cols=32  Identities=19%  Similarity=0.340  Sum_probs=15.5

Q ss_pred             HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 046111          276 KDLEVEVVELKRKNKELQIEKRELLVKLDAAE  307 (520)
Q Consensus       276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE  307 (520)
                      ..+..+..++......|..+.......|+..+
T Consensus       102 n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~  133 (314)
T PF04111_consen  102 NELQLELIEFQEERDSLKNQYEYASNQLDRLR  133 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445455545555555555544445333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=80.88  E-value=16  Score=34.61  Aligned_cols=81  Identities=26%  Similarity=0.333  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 046111          224 NKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKL  303 (520)
Q Consensus       224 ~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL  303 (520)
                      .-+|+|.++   ....+|+++.-|||+=-.|+-.+....=+-    |+++--.+||.+-.+|.+-...|-.|+..+...|
T Consensus        32 mSVReLNr~---LrG~~reEVvrlKQrRRTLKNRGYA~sCR~----KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~  104 (135)
T KOG4196|consen   32 MSVRELNRH---LRGLSREEVVRLKQRRRTLKNRGYAQSCRV----KRVQQKHELEKEKAELQQQVEKLKEENSRLRREL  104 (135)
T ss_pred             hhHHHHHHH---hcCCCHHHHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346777774   456789999999999999999987653332    4444446666666666666666666666666666


Q ss_pred             HHHHHHHh
Q 046111          304 DAAESKIA  311 (520)
Q Consensus       304 ~~AE~~~~  311 (520)
                      ++-..+..
T Consensus       105 da~k~k~e  112 (135)
T KOG4196|consen  105 DAYKSKYE  112 (135)
T ss_pred             HHHHHHHH
Confidence            65554443

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=80.85  E-value=1.2e+02  Score=35.48  Aligned_cols=85  Identities=22%  Similarity=0.270  Sum_probs=46.6

Q ss_pred             HHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhhcccchh
Q 046111          275 VKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEV  354 (520)
Q Consensus       275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~dR~seV  354 (520)
                      ++.|..+..+.-.....|..+-.+|=-+|++..-.....-.||+.++-..----++.+++    +.++|..|+.=+..-+
T Consensus       235 v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~~ls~d~I~~----ve~Ev~Rl~qlK~s~m  310 (660)
T KOG4302|consen  235 VKKLKEEKKQRLQKLQDLRTKLLELWNLLDTSDEERQRFVHVTESEATEPNSLSLDIIEQ----VEKEVDRLEQLKASNM  310 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHccccHHHhhccccccHHHHHH----HHHHHHHHHHHHHHhH
Confidence            666777777777777777777788888887776655555555544433210001111111    2234444444444446


Q ss_pred             hHHHHHHHH
Q 046111          355 EELVYLRWV  363 (520)
Q Consensus       355 EELVYLRWV  363 (520)
                      .|||.-+|+
T Consensus       311 Keli~k~r~  319 (660)
T KOG4302|consen  311 KELIEKKRS  319 (660)
T ss_pred             HHHHHHHHH
Confidence            666666653

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=80.84  E-value=66  Score=32.43  Aligned_cols=37  Identities=27%  Similarity=0.307  Sum_probs=26.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 046111          185 TVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEV  221 (520)
Q Consensus       185 ~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~  221 (520)
                      .++|..++.+|..|+.+..+-++.+....--..|.+-
T Consensus         3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq   39 (205)
T KOG1003|consen    3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQ   39 (205)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4678889999999998888877766655444444443

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=80.83  E-value=98  Score=34.36  Aligned_cols=25  Identities=36%  Similarity=0.492  Sum_probs=17.0

Q ss_pred             hhccHHHHHHHHHHHHHH-HHHHHHH
Q 046111          133 MADNARELERLRSLVLEL-QEREVKL  157 (520)
Q Consensus       133 ~~~~~~EI~~Lr~lVeeL-qERE~~L  157 (520)
                      .....+|+..|+..+.++ .++-..+
T Consensus       118 l~e~~~El~~l~~~l~~l~~~~~~~~  143 (511)
T PF09787_consen  118 LQELDQELRRLRRQLEELQNEKSRIL  143 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccC
Confidence            445678888888888888 4443333

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=80.82  E-value=0.5  Score=55.06  Aligned_cols=36  Identities=36%  Similarity=0.522  Sum_probs=0.0

Q ss_pred             hhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111          273 KSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAES  308 (520)
Q Consensus       273 ~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~  308 (520)
                      ..+.++...+..|+|.|+.|+.|..+|+-.++.+..
T Consensus       419 ~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k  454 (859)
T PF01576_consen  419 NELEELQEQLEELERENKQLQDELEDLTSQLDDAGK  454 (859)
T ss_dssp             ------------------------------------
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcc
Confidence            345666677778888888888888888777776654

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=80.65  E-value=1.3e+02  Score=35.67  Aligned_cols=126  Identities=22%  Similarity=0.305  Sum_probs=70.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH----HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHhhhhH
Q 046111          182 KIKTVEIDMLNITINSLQAERKKLQEQIAQS----SYVKKELEVARNKIKELQRQIQLDANQTKGQ-LLLLKQQVSGLQA  256 (520)
Q Consensus       182 ~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~----~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~q-i~~Lkq~V~~Lq~  256 (520)
                      .........+..++..|+++...|...+..+    -....+|..+..++..|+.++.. ++.++.. -.-|+.+....+.
T Consensus       585 ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~-~keS~s~~E~ql~~~~e~~e~  663 (769)
T PF05911_consen  585 EADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELES-AKESNSLAETQLKAMKESYES  663 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            4456666677888888888888777655433    33444555555566666666652 2222221 1122222222222


Q ss_pred             HHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111          257 KEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAES  308 (520)
Q Consensus       257 ~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~  308 (520)
                      -+.....-..|++.-...+.-||.|+..=|....++--.-++|-.+|+....
T Consensus       664 le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~  715 (769)
T PF05911_consen  664 LETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKK  715 (769)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhc
Confidence            2211111234455555567778888888888777777777777777776653

The function of this family is unknown.

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=80.31  E-value=1.5e+02  Score=36.26  Aligned_cols=84  Identities=11%  Similarity=0.162  Sum_probs=67.0

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Q 046111          175 VELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGL  254 (520)
Q Consensus       175 ~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~L  254 (520)
                      .+|..++..-...+..-...+.+++++...+++.+....-+..+++..-.++...--+++...+.++..+..|=.++..+
T Consensus       479 ~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~  558 (1041)
T KOG0243|consen  479 ELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRK  558 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            34445555555666667777888889999999998888888888888888988888999999999999998888888776


Q ss_pred             hHHH
Q 046111          255 QAKE  258 (520)
Q Consensus       255 q~~E  258 (520)
                      ..-.
T Consensus       559 ~~~~  562 (1041)
T KOG0243|consen  559 DRLD  562 (1041)
T ss_pred             hccc
Confidence            5544

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=80.17  E-value=1.7e+02  Score=36.62  Aligned_cols=35  Identities=26%  Similarity=0.302  Sum_probs=21.8

Q ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 046111          133 MADNARELERLRSLVLELQEREVKLEGELLEYYGL  167 (520)
Q Consensus       133 ~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~L  167 (520)
                      ++.....++.++..++.|+++-..|+.=+-.|...
T Consensus       225 l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y  259 (1353)
T TIGR02680       225 VADALEQLDEYRDELERLEALERALRNFLQRYRRY  259 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445567777777777777777776555444443

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=80.12  E-value=19  Score=31.35  Aligned_cols=45  Identities=16%  Similarity=0.353  Sum_probs=35.1

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Q 046111          174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKE  218 (520)
Q Consensus       174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~E  218 (520)
                      +-.||..+...-..|..|.++|+-|.+.|..|..++.....-+.+
T Consensus         6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~   50 (79)
T PRK15422          6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREE   50 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            446777777778899999999999999999999877654444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	520
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-09
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	4e-07
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	7e-07
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	8e-04
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	5e-06
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	5e-05
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.0 bits (165), Expect = 4e-12
 Identities = 70/496 (14%), Positives = 136/496 (27%), Gaps = 136/496 (27%)

Query: 1   MIVRAGF----LVAASIAAYAVKQ--------LNLKASNSSAPLTKPSGNGEARFEQQQS 48
           +    G     +      +Y V+         LNLK  NS   + +       + +   +
Sbjct: 158 V---LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 49  QGKEKQQFTCPDGGLREKKREEEEEEEEVKLISS--------IFDRARGSSSNTDDEDIL 100
                      D     K R    + E  +L+ S        +         N  +    
Sbjct: 215 SR--------SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-------NVQNAKAW 259

Query: 101 PEFE---------------DLLSGEIEYQLPIDKFDEAEKNKVYETEMADNARELERLRS 145
             F                D LS      + +D            T       E++ L  
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL------TP-----DEVKSLLL 308

Query: 146 LVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKL 205
             L+ + ++            L  +       +  + I     D L    N       KL
Sbjct: 309 KYLDCRPQD------------LPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKL 355

Query: 206 QEQIAQSSYVKKELEVARNKIKELQRQ------IQLDANQTKGQLLLLKQQVSGLQAKEE 259
              I +SS     LE A     E ++           A+     L L+   V      + 
Sbjct: 356 TTII-ESSL--NVLEPA-----EYRKMFDRLSVFPPSAHIPTILLSLIWFDV-----IKS 402

Query: 260 EAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASL-SNMTE 318
           + +    +L K   S+         ++++ KE  I    + ++L        +L  ++ +
Sbjct: 403 DVMVVVNKLHKY--SL---------VEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 319 SEKVAKAREEVNNLRHANDDL---------LKQVEGLQMNRFGEVEELVYL--RWVNACL 367
              + K  +  ++L     D          LK +E     R      + +L  R++   +
Sbjct: 452 HYNIPKTFDS-DDLIPPYLDQYFYSHIGHHLKNIE--HPERMTLFRMV-FLDFRFLEQKI 507

Query: 368 RYELRNYQAPAGKTSA-RDLNKSLS------PKSQERAKQLM--LEYAGSE--RGQVDTD 416
           R++   + A     +  + L           PK +     ++  L          +  TD
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK-YTD 566

Query: 417 L-ESNFSHPSSPGSED 431
           L             E+
Sbjct: 567 LLRIALMAEDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 5e-09
 Identities = 68/408 (16%), Positives = 130/408 (31%), Gaps = 99/408 (24%)

Query: 97  EDILPEFEDLLSGEIEYQLPIDKFDEAEKNKVYE--TEMADNARELERLRSLVLELQERE 154
           +DIL  FED      + +   D        +  +      D      RL   +L  QE  
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78

Query: 155 VK--LEGELLEYYG-LKEQESDIVELQRQLKIKTVE-IDMLNITINSLQAERK------- 203
           V+  +E  L   Y  L      I   QRQ  + T   I+  +   N  Q   K       
Sbjct: 79  VQKFVEEVLRINYKFLMSP---IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 204 ---KLQE---QIAQSSYV---------KKEL--EVARNKIKELQRQ-------IQLDANQ 239
              KL++   ++  +  V         K  +  +V  +   ++Q +       + L  N 
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS--YKVQCKMDFKIFWLNL-KNC 192

Query: 240 TKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEK--- 296
              + +L   Q    Q         D     +     ++++ +  ++ + + L   K   
Sbjct: 193 NSPETVLEMLQKLLYQI--------DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 297 RELLVKLDAAESKIASLSNM-------TESEKVAKAREEVNNLRHANDDLLKQVEGLQMN 349
             LLV L+   +K  +  N+       T  ++V      ++     +  L      L   
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF---LSAATTTHISLDHHSMTLTP- 300

Query: 350 RFGEVEELVYLRWVNACLRYELRNYQAPAGKTSARDLNKSLSPKSQERAKQLMLEYAGSE 409
              EV+ L  L++++ C   +L   +             + +P          L     E
Sbjct: 301 --DEVKSL-LLKYLD-CRPQDLPR-EV-----------LTTNP--------RRLSIIA-E 335

Query: 410 RGQVDTDLESNFSHPSSPGSEDFDNASIDSSTSKYSNLSKKPSLIQKL 457
             +       N+ H      +      I+SS    + L  +P+  +K+
Sbjct: 336 SIRDGLATWDNWKH---VNCDKLTTI-IESS---LNVL--EPAEYRKM 374

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 54/351 (15%), Positives = 106/351 (30%), Gaps = 84/351 (23%)

Query: 3   VRAGFLVAASIAAYAVKQLNLKASN--SSAPLTKP---SGNGE------ARFEQQQSQGK 51
                      +    K L+ +  +       T P   S   E      A ++  +    
Sbjct: 294 HSMTLTPDEVKSLLL-KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 52  EKQQFTCPDGGLREKKREEEEEEEEVKLIS--SIFDRARGSSSNTDDEDILPEFEDLLS- 108
           +K           E      E  E  K+    S+F              I P    LLS 
Sbjct: 353 DKLTTI------IESSLNVLEPAEYRKMFDRLSVFP---------PSAHI-PT--ILLSL 394

Query: 109 --GEIEYQLPIDKFDEAEKNKVYETEMADNARELERLRSLVLELQ---EREVKLEGELLE 163
              ++     +   ++  K  + E            + S+ LEL+   E E  L   +++
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVE---KQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 164 YYGLKEQ-ESDIVELQRQLKIKTVEIDM---------LNITINSLQAERKKLQEQIAQSS 213
           +Y + +  +SD         +    +D          L    N    ER  L   +    
Sbjct: 452 HYNIPKTFDSD--------DLIPPYLDQYFYSHIGHHLK---NIEHPERMTLFRMV---- 496

Query: 214 YVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLK 273
           ++  +      KI    R      N +   L  L+Q    L+  +      D + E+ + 
Sbjct: 497 FL--DFRFLEQKI----RHDSTAWNASGSILNTLQQ----LKFYKPYICDNDPKYERLVN 546

Query: 274 SVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAK 324
           ++ D       L +  + L   K   L+++ A  ++  ++      + V +
Sbjct: 547 AILDF------LPKIEENLICSKYTDLLRI-ALMAEDEAIFEEAHKQ-VQR 589

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 67.6 bits (165), Expect = 6e-12
 Identities = 48/244 (19%), Positives = 95/244 (38%), Gaps = 33/244 (13%)

Query: 124  EKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKI 183
            +K+     E      +L+    L  E +E  V+L  +       +E E  + E++ +++ 
Sbjct: 885  QKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK------QELEEILHEMEARIEE 938

Query: 184  KTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQ 243
            +             LQAE+KK+Q+Q+       +E E AR K++  +        + +  
Sbjct: 939  EEERS-------QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDD 991

Query: 244  LLLLKQQV------------------SGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVEL 285
            +L+++ Q                   + L  +EE+A        K    + +LEV + + 
Sbjct: 992  ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE 1051

Query: 286  KRKNKELQIEKRELLVKLDAAESKIASLSNMTES--EKVAKAREEVNNLRHANDDLLKQV 343
            ++  +EL+  KR+L  +      +IA L         ++AK  EE+       +D   Q 
Sbjct: 1052 EKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQK 1111

Query: 344  EGLQ 347
                
Sbjct: 1112 NNAL 1115

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 50/271 (18%), Positives = 114/271 (42%), Gaps = 19/271 (7%)

Query: 64   REKKREEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEY--QLPIDKFD 121
            ++++ EE   E E ++        +  +     +  + + E+ L  E     +L ++K  
Sbjct: 921  KKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVT 980

Query: 122  EAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQL 181
               K K  E ++     +  +L      L+ER   L   L E    +E+  ++ +L+ + 
Sbjct: 981  ADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE---EEEKAKNLTKLKNKH 1037

Query: 182  KIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTK 241
            +    E++        L+ E K  QE       ++ E      +I ELQ QI     + K
Sbjct: 1038 ESMISELE------VRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA----ELK 1087

Query: 242  GQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKS----VKDLEVEVVELKRKNKELQIEKR 297
             QL   ++++    A+ E+   +     KK++     + DL+ ++   K    + + +KR
Sbjct: 1088 AQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKR 1147

Query: 298  ELLVKLDAAESKIASLSNMTESEKVAKAREE 328
            +L  +L+A ++++    + T +++  +  + 
Sbjct: 1148 DLSEELEALKTELEDTLDTTATQQELRGSDY 1178

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 42/227 (18%), Positives = 98/227 (43%), Gaps = 29/227 (12%)

Query: 137  ARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITIN 196
             R+ E +++   ELQ  + + +    E   L+++ + + E +  L+ K            
Sbjct: 853  TRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK------------ 900

Query: 197  SLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLL---LKQQVSG 253
             LQAE +   E       +  + +     + E++ +I+ +  +++        ++QQ+  
Sbjct: 901  -LQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD 959

Query: 254  LQAK--EEEAIKKDVELEK-----KLKSVKD----LEVEVVELKRKNKELQIEKRELLVK 302
            L+ +  EEEA ++ ++LEK     K+K ++D    +E +  +L ++ K L+    +L   
Sbjct: 960  LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019

Query: 303  LDAAESKIASLSNMTES--EKVAKAREEVNNLRHANDDLLKQVEGLQ 347
            L   E K  +L+ +       +++    +     +  +L K    L+
Sbjct: 1020 LAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 45/248 (18%), Positives = 107/248 (43%), Gaps = 23/248 (9%)

Query: 63   LREKKREEEEEEEEVKLISSIFDRARGS--SSNTDDEDILPEFEDLLSGEIEYQLPIDKF 120
            L+ +K++ +++  +++      + AR          +  + + ED      +  +  D+ 
Sbjct: 946  LQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMED------DILIMEDQN 999

Query: 121  DEAEK-NKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYG-LKEQESDIVELQ 178
            ++  K  K+ E  ++D    L         L + + K E  + E    LK++E    EL+
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELE 1059

Query: 179  RQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDAN 238
            +  +    E   L+  I  LQA+  +L+ Q+A+    ++EL+ A  ++++   Q      
Sbjct: 1060 KIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK---EEELQAALARLEDETSQKNNALK 1116

Query: 239  QTK---GQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVK-------DLEVEVVELKRK 288
            + +     +  L++ +   +A   +A K+  +L ++L+++K       D      EL+  
Sbjct: 1117 KIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGS 1176

Query: 289  NKELQIEK 296
            + +   +K
Sbjct: 1177 DYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.1 bits (130), Expect = 8e-08
 Identities = 33/204 (16%), Positives = 83/204 (40%), Gaps = 22/204 (10%)

Query: 163  EYYGLKEQESDIVELQRQ----LKIKTVEIDMLNITINSLQA------ERKKLQEQIAQS 212
             +   ++Q   I  +Q      + +       L   I  L        E +   E++ + 
Sbjct: 810  AFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQR- 868

Query: 213  SYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKL 272
               K+  + A  ++KEL+++      +       L+ +       EE  ++   + ++  
Sbjct: 869  --TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELE 926

Query: 273  KSVKDLEVEVVELKRKNKELQIEKR-------ELLVKLDAAESKIASLS--NMTESEKVA 323
            + + ++E  + E + ++++LQ EK+       +L  +L+  E+    L    +T   K+ 
Sbjct: 927  EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIK 986

Query: 324  KAREEVNNLRHANDDLLKQVEGLQ 347
            K  +++  +   N+ L K+ + L+
Sbjct: 987  KMEDDILIMEDQNNKLTKERKLLE 1010

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 40/228 (17%), Positives = 81/228 (35%), Gaps = 17/228 (7%)

Query: 133  MADNARELERLRSLVLELQER------EVKLEGELLEYYGLKEQESDIVELQRQLKIKTV 186
            M    +  + +R   + LQ          K +  L E+  +  Q+     L R    +T+
Sbjct: 828  MYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTL 887

Query: 187  EIDML---NITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDAN----- 238
            +  +           + E KKL+ +       KK      NKI +LQR+I          
Sbjct: 888  KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSL 947

Query: 239  --QTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEK 296
              +     +    +   L++  E     + E +     V  L+ E+ +L+++  + Q EK
Sbjct: 948  LEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007

Query: 297  RELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVE 344
            + +    D  + +   L +  + +     + E   L     D  K++ 
Sbjct: 1008 KTIEEWADKYKHETEQLVSELKEQN-TLLKTEKEELNRRIHDQAKEIT 1054

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 57.8 bits (140), Expect = 6e-09
 Identities = 32/257 (12%), Positives = 91/257 (35%), Gaps = 14/257 (5%)

Query: 102  EFEDLLSGEIEYQLPIDKFDEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGEL 161
             ++ +    I  Q  +  +    K ++   E    +  +++     L        L+  +
Sbjct: 834  RYQCMRDATIALQALLRGYLVRNKYQMMLREHK--SIIIQKHVRGWLARVHYHRTLKAIV 891

Query: 162  LEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEV 221
                  +   +      ++LKI+   ++        L+ +  +LQ +I +     KE + 
Sbjct: 892  YLQCCYRRMMAK--RELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDE---QNKEYKS 946

Query: 222  ARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVE 281
               K+  L+     +  +       L+  V  L+  EEEA      +    + +  L  E
Sbjct: 947  LLEKMNNLEITYSTETEK-------LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE 999

Query: 282  VVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLK 341
            + + + + K ++    +   + +   S++   + + ++EK    R   +  +   + + K
Sbjct: 1000 LHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEK 1059

Query: 342  QVEGLQMNRFGEVEELV 358
            ++         ++ +  
Sbjct: 1060 KLVEETKQLELDLNDER 1076

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 32/199 (16%), Positives = 86/199 (43%), Gaps = 24/199 (12%)

Query: 149  ELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEID---------MLNITINSLQ 199
            +L+E ++ L   L +   L++ E+ + +LQ  L  K  E+D         +  +  +   
Sbjct: 1914 QLEEEQLHLNIGLKK---LRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQA 1970

Query: 200  AERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEE 259
            AE K+       +  ++ +L+V   +I   + +   D  + +     L+++V  L+    
Sbjct: 1971 AEIKQ-----KDARELQVQLDVRNKEIAVQKVKAYADLEKAE-PTGPLREEVEQLENAAN 2024

Query: 260  EAIKKDVELEKKLKS----VKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSN 315
            E   K  E+   + +    +   + E   L R+ ++++ E  ++  K+D + + + +L++
Sbjct: 2025 ELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNS 2084

Query: 316  MTE--SEKVAKAREEVNNL 332
                  ++      +++ +
Sbjct: 2085 ERGRWEQQSENFNTQMSTV 2103

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 25/182 (13%), Positives = 61/182 (33%), Gaps = 2/182 (1%)

Query: 102  EFEDLLSGEIEYQLPIDKFDEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGEL 161
            E E + +        I +        +   E+      LE+      E    E+K + ++
Sbjct: 825  ELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKI 884

Query: 162  LEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEV 221
                    +    +E     K   +  +    +I ++QA+ K L+    +   ++ +   
Sbjct: 885  AVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNS 944

Query: 222  ARNKIKE--LQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLE 279
                I     +         T+ +     QQ +G+++  E      +   ++L+ ++DL 
Sbjct: 945  DLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLH 1004

Query: 280  VE 281
              
Sbjct: 1005 HH 1006

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 21/177 (11%), Positives = 49/177 (27%), Gaps = 7/177 (3%)

Query: 63   LREKKREEEEEEEEVKLISSIFDRARGSSSNTDDEDILPEFEDLLSGEIEYQ----LPID 118
                + +    + E  +  +        S+ +  E    E  + L  E++ Q    + + 
Sbjct: 830  YNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQ 889

Query: 119  KFDEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGL-KEQESDIVEL 177
            K++   K                     +  +Q +   LE    E   L  +  SD++ +
Sbjct: 890  KYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSI 949

Query: 178  QRQLKIKTVE--IDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQ 232
              QL         ++          +   ++                  KI++L   
Sbjct: 950  LAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHH 1006

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 23/175 (13%), Positives = 59/175 (33%), Gaps = 2/175 (1%)

Query: 106 LLSGEIEYQLPIDKFDEAEKNKVYETEMADNARELERLRSLVLELQEREVKLEGELLEYY 165
           + +        I +        +   E+      LE+      E    E+K + ++    
Sbjct: 821 IYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLL 880

Query: 166 GLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNK 225
               +    +E     K   +  +    +I ++QA+ K L+    +   ++ +       
Sbjct: 881 QKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLS 940

Query: 226 IKE--LQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDL 278
           I     +         T+ +     QQ +G+++  E      +   ++L+ ++DL
Sbjct: 941 ILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDL 995

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 17/164 (10%), Positives = 40/164 (24%), Gaps = 12/164 (7%)

Query: 201 ERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEE 260
            + +L ++    +          +    L++  Q  A   + +L   K+    LQ     
Sbjct: 827 TKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRI 886

Query: 261 AIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKR-------ELLVKLDAAESKIASL 313
             K      +   + K + +   E       +Q + +       E       + S + S+
Sbjct: 887 LKK-----LENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSI 941

Query: 314 SNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQMNRFGEVEEL 357
                        E               V+         +   
Sbjct: 942 LAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAE 985

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 18/141 (12%), Positives = 53/141 (37%), Gaps = 3/141 (2%)

Query: 195 INSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQI---QLDANQTKGQLLLLKQQV 251
           ++   +E+ +   ++      +K  +     +KE ++++   + + N  +  L    +++
Sbjct: 141 LSLKPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEM 200

Query: 252 SGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIA 311
           S L+ ++E+  K    L+K  +       +    ++    +Q    E   + D   S + 
Sbjct: 201 SNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVE 260

Query: 312 SLSNMTESEKVAKAREEVNNL 332
              +             ++NL
Sbjct: 261 LTKDFEVRVHAPNGVLTIDNL 281

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	520
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.17
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	97.02
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.93
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.76
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.57
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.5
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.34
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.23
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	96.19
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	93.51
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	92.85
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	92.42
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	91.94
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	90.69
1ik9_A	213	DNA repair protein XRCC4; DNA END joining, double-	90.46
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	90.28
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	89.59
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	89.38
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	87.01
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	86.79
2wt7_B	90	Transcription factor MAFB; transcription, transcri	86.62
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	86.02
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	85.3
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	84.53
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	84.35
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	84.28
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	82.97
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	82.1
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	81.39
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	80.97

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.17  E-value=0.099  Score=50.57  Aligned_cols=30  Identities=13%  Similarity=0.150  Sum_probs=11.9

Q ss_pred             HHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111          275 VKDLEVEVVELKRKNKELQIEKRELLVKLD  304 (520)
Q Consensus       275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~  304 (520)
                      +..||.++.++-.....++.+..++..++.
T Consensus       106 i~~lE~eile~~e~ie~~~~~l~~~~~~l~  135 (256)
T 3na7_A          106 SNQANREIENLQNEIKRKSEKQEDLKKEML  135 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444333333333333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=97.02  E-value=0.03  Score=64.59  Aligned_cols=129  Identities=18%  Similarity=0.238  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHh
Q 046111          198 LQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKD  277 (520)
Q Consensus       198 LEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~  277 (520)
                      |...+..|++.+.++..   .|+.....++.|+.+++........++..|+..+..|+..+.+       .+.....++.
T Consensus       919 l~~~~~~LE~kl~eLq~---rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e-------~~~~~~~v~~  988 (1080)
T 2dfs_A          919 YKKLHIGLENKIMQLQR---KIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE-------AKNATNRVLS  988 (1080)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence            33444444444444332   2333333444444443333333333444444444444443322       2222233455


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHH
Q 046111          278 LEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVE  344 (520)
Q Consensus       278 LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVE  344 (520)
                      |+.|+.+|+.....+..|+..|-.+.+..+..+        .+.|...+.+...||+..+||..++.
T Consensus       989 L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L--------~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A          989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHET--------EQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666666666665555555544444443222        24455555555556655555554333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.93  E-value=0.17  Score=48.32  Aligned_cols=132  Identities=23%  Similarity=0.316  Sum_probs=91.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 046111          136 NARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYV  215 (520)
Q Consensus       136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v  215 (520)
                      ...||...|.....++.+=..|+.+|-||-.      -=.+||.+|.   .+|..+..++.-|+..+.+|.         
T Consensus         8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqe------sSrELE~ELE---~eL~~~Ek~~~~L~~~~~~L~---------   69 (189)
T 2v71_A            8 LKEETAYWKELSMKYKQSFQEARDELVEFQE------GSRELEAELE---AQLVQAEQRNRDLQADNQRLK---------   69 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---------
Confidence            3678999999999999999999999999965      2456666653   456666666666666666554         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHH
Q 046111          216 KKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIE  295 (520)
Q Consensus       216 ~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~E  295 (520)
                       .|++.||.|+...+.....       ++..|+..+..|....                 ..|-..+++|-..|..|+-.
T Consensus        70 -~E~e~~k~K~~~~~~e~~~-------~~~~Lq~el~~l~~~~-----------------~~l~~~ireLEq~NDdlEr~  124 (189)
T 2v71_A           70 -YEVEALKEKLEHQYAQSYK-------QVSVLEDDLSQTRAIK-----------------EQLHKYVRELEQANDDLERA  124 (189)
T ss_dssp             -HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhhHHHHH
Confidence             4567777777666655444       4555555555555432                 23444556666778888888


Q ss_pred             HHHHHHhHHHHHHHH
Q 046111          296 KRELLVKLDAAESKI  310 (520)
Q Consensus       296 K~eL~~kL~~AE~~~  310 (520)
                      .|..+.-|+..++++
T Consensus       125 ~R~~~~SleD~e~kl  139 (189)
T 2v71_A          125 KRATIMSLEDFEQRL  139 (189)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHH
Confidence            888888777777765

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.76  E-value=0.0056  Score=70.66  Aligned_cols=32  Identities=19%  Similarity=0.173  Sum_probs=12.4

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111          179 RQLKIKTVEIDMLNITINSLQAERKKLQEQIA  210 (520)
Q Consensus       179 ~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~  210 (520)
                      .+|.....++..+...+..|+.+...|+.++.
T Consensus       899 ~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~  930 (1184)
T 1i84_S          899 EKLQAETELYAEAEEMRVRLAAKKQELEEILH  930 (1184)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333344444444444443333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.57  E-value=0.34  Score=46.80  Aligned_cols=70  Identities=14%  Similarity=0.178  Sum_probs=27.1

Q ss_pred             hhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH----hHHHHHHHHHHHHHHHHHHH
Q 046111          164 YYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSS----YVKKELEVARNKIKELQRQI  233 (520)
Q Consensus       164 y~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~----~v~~ELe~ar~Kir~Lqkk~  233 (520)
                      ++.|++-.+.+..|+.++..--.+|..|...+..++..-..+..++.+..    .+..+++.++.+++..+.++
T Consensus        10 L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l   83 (256)
T 3na7_A           10 LIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM   83 (256)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444333333333333333333333333333332222    22233334444444444444

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.50  E-value=0.098  Score=60.47  Aligned_cols=111  Identities=24%  Similarity=0.313  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHH-hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhH
Q 046111          188 IDMLNITINSLQAERKKLQEQIAQSS-YVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDV  266 (520)
Q Consensus       188 i~~L~~kI~sLEsEn~RL~~qv~e~~-~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~  266 (520)
                      |..|..++..++.+|..|++.+..+. +...|....+..+.+|+.. ..+...+++++..|.+++..++..=.+..+--.
T Consensus       930 l~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~-~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~ 1008 (1080)
T 2dfs_A          930 IMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS-EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008 (1080)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455555555555555443222 2334444444444444442 444445555666666666665554444443333


Q ss_pred             HHHHHHhhH-HhHHHHHHHHHHHhHHHHHHHHHH
Q 046111          267 ELEKKLKSV-KDLEVEVVELKRKNKELQIEKREL  299 (520)
Q Consensus       267 E~EkKl~~l-~~LE~Ev~ELRr~Nk~LQ~EK~eL  299 (520)
                      +++.+.+.+ .+|+..|..|+..|..|+.+..+|
T Consensus      1009 ~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A         1009 TIEEWADKYKHETEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444443332 244444444444444444444444

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.34  E-value=0.0094  Score=68.82  Aligned_cols=73  Identities=12%  Similarity=0.150  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHhhh-------cchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 046111          138 RELERLRSLVLELQEREV----KLEGELLEYY-------GLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQ  206 (520)
Q Consensus       138 ~EI~~Lr~lVeeLqERE~----~LE~eLLEy~-------~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~  206 (520)
                      .-+..+...|+....|..    +|-.++-.+.       .|++....+.+|+..|......+..+..++..|+.+...++
T Consensus       819 ~a~~~iQ~~~r~~~~~k~~~~~rl~~klkpLl~~a~~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~  898 (1184)
T 1i84_S          819 ESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ  898 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHTTTCCCCTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666655532    3322222211       22223334444555555444455555555555555555555


Q ss_pred             HHHH
Q 046111          207 EQIA  210 (520)
Q Consensus       207 ~qv~  210 (520)
                      .++.
T Consensus       899 ~~L~  902 (1184)
T 1i84_S          899 EKLQ  902 (1184)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            4433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.23  E-value=0.69  Score=59.07  Aligned_cols=181  Identities=18%  Similarity=0.238  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH----HhHHHHHHHHHH
Q 046111          149 ELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQS----SYVKKELEVARN  224 (520)
Q Consensus       149 eLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~----~~v~~ELe~ar~  224 (520)
                      ++.++-.+|+.=|-   -|.|....|.+|+.+|..+..++..-+.+.+.+=.+-..=++++.+-    ....++++....
T Consensus      1914 el~~~~~rl~~GL~---KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ 1990 (3245)
T 3vkg_A         1914 QLEEEQLHLNIGLK---KLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNK 1990 (3245)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444443333   35666667777777777766666555444443322222222222211    122223333334


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 046111          225 KIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLD  304 (520)
Q Consensus       225 Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~  304 (520)
                      ++...+...+.+..++.=- .=+++++..+++.   .....+.+..+-..|++|+.++.+|+..-.++..||..|....+
T Consensus      1991 ei~~~k~~~e~dL~~A~Pa-~Pkr~~l~~ae~~---l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A         1991 EIAVQKVKAYADLEKAEPT-GPLREEVEQLENA---ANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp             HHHHHHHHHHHCC--------CHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCC-ChHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444443332100 2244555544433   23344456666667788888888888888888888888877777


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHhhhhhcHHHHHHHHHHhh
Q 046111          305 AAESKIASLSNMTESEKVAKAREEVNNLRHANDDLLKQVEGLQM  348 (520)
Q Consensus       305 ~AE~~~~~lsnv~e~~~Va~a~eE~~~LR~~NEdL~kqVEqLq~  348 (520)
                      .++.++            .+|..-++.|-.++.+-..++++|+.
T Consensus      2067 ~~~~kl------------~rA~~Li~gL~~Ek~RW~~~~~~l~~ 2098 (3245)
T 3vkg_A         2067 KVKNKV------------DRSIALLDNLNSERGRWEQQSENFNT 2098 (3245)
T ss_dssp             HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH------------HHHHHHHHhhhhccccHHHHHHHHHH
Confidence            666654            34555566777777777777776654

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=96.19  E-value=0.65  Score=41.56  Aligned_cols=25  Identities=12%  Similarity=-0.043  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046111          137 ARELERLRSLVLELQEREVKLEGEL  161 (520)
Q Consensus       137 ~~EI~~Lr~lVeeLqERE~~LE~eL  161 (520)
                      ..++..+...+..|...-..++.++
T Consensus        12 ~~~~~~~~~~~~~l~~~l~~l~~~~   36 (284)
T 1c1g_A           12 KLDKENALDRADEAEADKKAAEDRS   36 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555544444444443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=93.51  E-value=5.4  Score=38.03  Aligned_cols=100  Identities=20%  Similarity=0.249  Sum_probs=55.4

Q ss_pred             hhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 046111          127 KVYETEMADNARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQ  206 (520)
Q Consensus       127 ~~~~~~~~~~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~  206 (520)
                      ..|-..-..+.+.+..|+.-..++++==.-||.+|-.  .|...+.....|+..+.--..|++.++.|......+..   
T Consensus        13 ~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~--eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~---   87 (189)
T 2v71_A           13 AYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEA--QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY---   87 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            3343444555677777777777777766666666521  23334555666666666666666666666655555522   


Q ss_pred             HHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 046111          207 EQIAQSSYVKKELEVARNKIKELQRQIQ  234 (520)
Q Consensus       207 ~qv~e~~~v~~ELe~ar~Kir~Lqkk~~  234 (520)
                         .....+..|+...+..+..|+++|.
T Consensus        88 ---~~~~~Lq~el~~l~~~~~~l~~~ir  112 (189)
T 2v71_A           88 ---KQVSVLEDDLSQTRAIKEQLHKYVR  112 (189)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2334444444444555555554443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=93.36  E-value=5.2  Score=51.48  Aligned_cols=19  Identities=16%  Similarity=0.151  Sum_probs=10.2

Q ss_pred             HHHHHHHHhhcccchhhHH
Q 046111          339 LLKQVEGLQMNRFGEVEEL  357 (520)
Q Consensus       339 L~kqVEqLq~dR~seVEEL  357 (520)
                      |...+.+=+..|-..+++|
T Consensus      2078 Li~gL~~Ek~RW~~~~~~l 2096 (3245)
T 3vkg_A         2078 LLDNLNSERGRWEQQSENF 2096 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhccccHHHHHHHH
Confidence            4445555555565555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.85  E-value=3  Score=43.42  Aligned_cols=36  Identities=25%  Similarity=0.171  Sum_probs=22.8

Q ss_pred             HHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111          275 VKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI  310 (520)
Q Consensus       275 l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~  310 (520)
                      +.+||....+.++...+|+.|+..+..++..-+.++
T Consensus       546 ~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~  581 (597)
T 3oja_B          546 NIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK  581 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345666666666677777777776666666555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.42  E-value=1.6  Score=45.58  Aligned_cols=92  Identities=13%  Similarity=0.092  Sum_probs=44.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHH-----------hhhhhHHHHHHHHHHHHHHHHHH
Q 046111          136 NARELERLRSLVLELQEREVKLEGELLEYYGLKEQESDIVELQRQL-----------KIKTVEIDMLNITINSLQAERKK  204 (520)
Q Consensus       136 ~~~EI~~Lr~lVeeLqERE~~LE~eLLEy~~LKEQEa~v~ELe~~L-----------~~k~~Ei~~L~~kI~sLEsEn~R  204 (520)
                      ...|+..++..|..|+++....+..+-....      .+.+....+           ..-..++..+..++..++.++++
T Consensus       454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~------~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  527 (597)
T 3oja_B          454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHA------EIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQA  527 (597)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            4557777777777777776665554432221      111111111           11123344445555666666666


Q ss_pred             HHHHH----HhHHhHHHHHHHHHHHHHHHHHHH
Q 046111          205 LQEQI----AQSSYVKKELEVARNKIKELQRQI  233 (520)
Q Consensus       205 L~~qv----~e~~~v~~ELe~ar~Kir~Lqkk~  233 (520)
                      ++.++    .++..+.+|.+..+.+++..++++
T Consensus       528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~  560 (597)
T 3oja_B          528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQ  560 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence            66655    344444444444444444444333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=91.94  E-value=6.1  Score=34.74  Aligned_cols=16  Identities=13%  Similarity=0.054  Sum_probs=6.9

Q ss_pred             HHHHHHHHhhhhHHHH
Q 046111          244 LLLLKQQVSGLQAKEE  259 (520)
Q Consensus       244 i~~Lkq~V~~Lq~~Ee  259 (520)
                      +.-.-++...|.+...
T Consensus        64 l~e~EE~~~~L~~~k~   79 (129)
T 2fxo_A           64 LADAEERCDQLIKNKI   79 (129)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHH
Confidence            3334444444444443

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=90.69  E-value=0.47  Score=39.68  Aligned_cols=74  Identities=30%  Similarity=0.456  Sum_probs=47.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHH--HHHHHHHHhhhhh-------cHHHHHHHHHHhhccc
Q 046111          281 EVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKV--AKAREEVNNLRHA-------NDDLLKQVEGLQMNRF  351 (520)
Q Consensus       281 Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~V--a~a~eE~~~LR~~-------NEdL~kqVEqLq~dR~  351 (520)
                      |+.+||+....+..+|.-|...++.++..+..+-.--|+++.  ..++.++..||..       .-||-.+||.|+    
T Consensus         1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~----   76 (86)
T 3swk_A            1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ----   76 (86)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----
Confidence            356777777777777777777777776655444333344433  2334555555554       345888888886    


Q ss_pred             chhhHHHHHH
Q 046111          352 GEVEELVYLR  361 (520)
Q Consensus       352 seVEELVYLR  361 (520)
                         +||.|||
T Consensus        77 ---eEl~fLk   83 (86)
T 3swk_A           77 ---EEIAFLK   83 (86)
T ss_dssp             ---HHHHHHT
T ss_pred             ---HHHHHHh
Confidence               7899887

>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*

Probab=90.46  E-value=1.8  Score=41.67  Aligned_cols=56  Identities=20%  Similarity=0.256  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 046111          190 MLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQV  251 (520)
Q Consensus       190 ~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V  251 (520)
                      .|..+...|+.+..+|.+++.++...+.++|..      |=.|+-...|.=|..|+.|++++
T Consensus       143 ~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~------L~~KF~~lLNeKK~KIR~lq~~L  198 (213)
T 1ik9_A          143 HLQKENERLLRDWNDVQGRFEKAVSAKEALETD------LYKRFILVLNEKKTKIRSLHNKL  198 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhHHHHHHHHHHH
Confidence            344555667777777788888888888877753      44555555555566666666554

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=90.28  E-value=12  Score=35.14  Aligned_cols=108  Identities=20%  Similarity=0.167  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHh-------h
Q 046111          191 LNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAI-------K  263 (520)
Q Consensus       191 L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~-------~  263 (520)
                      ++.+...--.-..||+.+.+++.+....++.   .+++|+-++...    ..+-..|.+.++.||+.=....       .
T Consensus        18 ~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~---~~rELq~~~~~L----~~~k~~Leke~~~LQa~L~qEr~~r~q~se   90 (168)
T 3o0z_A           18 ANDLLRTESDTAVRLRKSHTEMSKSISQLES---LNRELQERNRIL----ENSKSQTDKDYYQLQAILEAERRDRGHDSE   90 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334445555555555555554443   345555444433    2344566667766666542221       1


Q ss_pred             hhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111          264 KDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDAAES  308 (520)
Q Consensus       264 ~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~  308 (520)
                      .-.+++.   ++..|..|+..+|-.-..++.+|+.|..|+..-|.
T Consensus        91 ~~~elq~---ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK  132 (168)
T 3o0z_A           91 MIGDLQA---RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK  132 (168)
T ss_dssp             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1233443   35668888888888888888888888888776654

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=89.59  E-value=10  Score=33.31  Aligned_cols=11  Identities=18%  Similarity=0.685  Sum_probs=5.0

Q ss_pred             HHHHHHHHHhh
Q 046111          338 DLLKQVEGLQM  348 (520)
Q Consensus       338 dL~kqVEqLq~  348 (520)
                      +|-++++.+..
T Consensus       115 ~Lk~~led~e~  125 (129)
T 2fxo_A          115 ELKRDIDDLEL  125 (129)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            34444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=89.38  E-value=20  Score=36.64  Aligned_cols=37  Identities=16%  Similarity=0.159  Sum_probs=27.2

Q ss_pred             hHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 046111          274 SVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKI  310 (520)
Q Consensus       274 ~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~  310 (520)
                      ..+..-.++..|++.|.+|+.+.+++-.++..|.+.+
T Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (487)
T 3oja_A          436 DWDMYQHKETQLAEENARLKKLNGEADLALASANATL  472 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHH
Confidence            3455556777788888888888888888888776654

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=87.01  E-value=19  Score=33.33  Aligned_cols=27  Identities=30%  Similarity=0.335  Sum_probs=19.7

Q ss_pred             hHHHHHHHHHHHhhhhhcHHHHHHHHH
Q 046111          319 SEKVAKAREEVNNLRHANDDLLKQVEG  345 (520)
Q Consensus       319 ~~~Va~a~eE~~~LR~~NEdL~kqVEq  345 (520)
                      +.||+.|+.+-..+-.-|+.|.+|+..
T Consensus       100 N~MVa~ar~~~~~~e~r~~~L~~ql~e  126 (154)
T 2ocy_A          100 NNMVADARKEKYAIEILNKRLTEQLRE  126 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568888877777777777777776653

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=86.79  E-value=6.2  Score=33.60  Aligned_cols=63  Identities=19%  Similarity=0.156  Sum_probs=45.7

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH----HHHHHHHHHHHH
Q 046111          174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARN----KIKELQRQIQLD  236 (520)
Q Consensus       174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~----Kir~Lqkk~~~~  236 (520)
                      +..++....-...+|..|..+|..|+.+-.+++..+.+......+-+....    .+..|+|||+..
T Consensus        32 ~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll   98 (101)
T 3u1c_A           32 KKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555667788889999999999988888888877666665555554    777788877753

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=86.62  E-value=3.7  Score=35.03  Aligned_cols=81  Identities=26%  Similarity=0.311  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 046111          226 IKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKLDA  305 (520)
Q Consensus       226 ir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~  305 (520)
                      +++|.+.+   ..-+++++..|||+=-.|+-++..  .+|  =.+|++...+||.++..|.+....|..|+..+..-+++
T Consensus         8 VreLN~~L---~gls~eev~~lKq~RRtlKNRgyA--q~C--R~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~   80 (90)
T 2wt7_B            8 VRELNRHL---RGFTKDEVIRLKQKRRTLKNRGYA--QSC--RYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDA   80 (90)
T ss_dssp             HHHHHTTC---TTCCHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---cCCCHHHHHHHHHHHHhhhhhHHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555   367889999999998888888854  334  34788888999999999999999999999999887777


Q ss_pred             HHHHHhhc
Q 046111          306 AESKIASL  313 (520)
Q Consensus       306 AE~~~~~l  313 (520)
                      ...+...|
T Consensus        81 ~k~k~~~L   88 (90)
T 2wt7_B           81 YKVKSEKL   88 (90)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            76666544

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=86.02  E-value=12  Score=38.12  Aligned_cols=71  Identities=24%  Similarity=0.269  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHHHhhHHhHHHHHHHHHHHhHHHH
Q 046111          217 KELEVARNKIKELQRQIQ---LDANQTKGQLLLLKQQVSGLQAKEEEAIKKDVELEKKLKSVKDLEVEVVELKRKNKELQ  293 (520)
Q Consensus       217 ~ELe~ar~Kir~Lqkk~~---~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ  293 (520)
                      ..-..+++...+||+||.   ...-+.+.|...----|..|++-=+.      +.-.-.+++++||.||.+|-...+++.
T Consensus       390 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (471)
T 3mq9_A          390 RAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDA------EKAQGQKKVEELEGEITTLNHKLQDAS  463 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333456666677777664   44455666666555556666543211      111122467777777766544444333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=85.30  E-value=11  Score=34.03  Aligned_cols=95  Identities=18%  Similarity=0.205  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHH--HHHHHH-HHHhHH--hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHh
Q 046111          188 IDMLNITINSLQAE--RKKLQE-QIAQSS--YVKKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQAKEEEAI  262 (520)
Q Consensus       188 i~~L~~kI~sLEsE--n~RL~~-qv~e~~--~v~~ELe~ar~Kir~Lqkk~~~~a~q~K~qi~~Lkq~V~~Lq~~Eee~~  262 (520)
                      +..++.+|..+...  +.++.. .++-.+  -+.-|+-.++.++..|..++...    ..++-.||..+..++.+-    
T Consensus        34 A~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~----~kE~~~lK~el~~~~~k~----  105 (138)
T 3hnw_A           34 ASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENK----DKEIYDLKHELIAAQIKA----  105 (138)
T ss_dssp             HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH----
Confidence            34556666666633  555542 222222  24556666666666666555543    445555666555544443    


Q ss_pred             hhhHHHHHHHhhHHhHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 046111          263 KKDVELEKKLKSVKDLEVEVVELKRKNKELQIEKRELLVKL  303 (520)
Q Consensus       263 ~~d~E~EkKl~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL  303 (520)
                                   ..+..++.+|++.+..||.++..|-..|
T Consensus       106 -------------e~~~~e~~~l~~~~~~l~~~~~~le~~~  133 (138)
T 3hnw_A          106 -------------ESSAKEIKELKSEINKYQKNIVKLETEL  133 (138)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         4456666777777777777777664333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=84.53  E-value=11  Score=31.27  Aligned_cols=33  Identities=9%  Similarity=0.245  Sum_probs=27.2

Q ss_pred             HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 046111          276 KDLEVEVVELKRKNKELQIEKRELLVKLDAAES  308 (520)
Q Consensus       276 ~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~  308 (520)
                      ..+|.+++-||+-...+-.-+.+|-.|+++-..
T Consensus        45 ~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~e   77 (86)
T 3swk_A           45 EEAENTLQSFRQDVDNASLARLDLERKVESLQE   77 (86)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999777665443

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=84.28  E-value=12  Score=31.32  Aligned_cols=41  Identities=15%  Similarity=0.339  Sum_probs=30.1

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 046111          174 IVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSY  214 (520)
Q Consensus       174 v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~  214 (520)
                      +-.||..+...-..|..|.++|+-|..+|..|..++.+...
T Consensus         8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~   48 (81)
T 2jee_A            8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH   48 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44566777767777888888888888888888877666444

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=82.97  E-value=31  Score=32.37  Aligned_cols=38  Identities=21%  Similarity=0.247  Sum_probs=24.5

Q ss_pred             hhHHhHHHHHHHHHHHhHHHHHHHHHHH----HhHHHHHHHH
Q 046111          273 KSVKDLEVEVVELKRKNKELQIEKRELL----VKLDAAESKI  310 (520)
Q Consensus       273 ~~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~----~kL~~AE~~~  310 (520)
                      .++..++.+...|--....|+.++..+-    .+|-+++.++
T Consensus       111 ~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~  152 (168)
T 3o0z_A          111 HNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRL  152 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3345566666666666677777776666    6677777654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=82.10  E-value=29  Score=35.40  Aligned_cols=64  Identities=23%  Similarity=0.175  Sum_probs=30.6

Q ss_pred             hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 046111          171 ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEQIAQSSYVKKELEVARNKIKELQRQIQLDA  237 (520)
Q Consensus       171 Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLEsEn~RL~~qv~e~~~v~~ELe~ar~Kir~Lqkk~~~~a  237 (520)
                      +....++|++....+.+.+....+|..|.+|++|++..+.++..   +++.|+.+.+.+-.+-+..|
T Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  483 (487)
T 3oja_A          420 EEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADL---ALASANATLQELVVREQNLA  483 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhh---hhHhcccHHHHHHHHHHHHH
Confidence            33444444444444455555555555555555555555444332   33344444444444433333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=81.39  E-value=33  Score=31.63  Aligned_cols=95  Identities=23%  Similarity=0.300  Sum_probs=58.0

Q ss_pred             HHHHhhhhHHHHHHhhhhHHHHHHHh----hHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHhhcCCCchhHHHH
Q 046111          248 KQQVSGLQAKEEEAIKKDVELEKKLK----SVKDLEVEVVELKRKNKELQIEKRELLVKLDAAESKIASLSNMTESEKVA  323 (520)
Q Consensus       248 kq~V~~Lq~~Eee~~~~d~E~EkKl~----~l~~LE~Ev~ELRr~Nk~LQ~EK~eL~~kL~~AE~~~~~lsnv~e~~~Va  323 (520)
                      .+.+-.|+..+.....+....+.++.    .+++-|.-+..--|....||.+...|-.+|.++..+...+     .+...
T Consensus        55 ~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i-----~~eLd  129 (155)
T 2efr_A           55 TNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAI-----SEEMK  129 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_pred             HHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence            34444566666666666555555443    3566666777777888888888888888888776554222     22233


Q ss_pred             HHHHHHHhhhhhcHHHHHHHHHHh
Q 046111          324 KAREEVNNLRHANDDLLKQVEGLQ  347 (520)
Q Consensus       324 ~a~eE~~~LR~~NEdL~kqVEqLq  347 (520)
                      .+-.+++.+-.-|..|-++|-.|+
T Consensus       130 ~tl~el~~~~~~~~~~~~~~~~~~  153 (155)
T 2efr_A          130 QLEDKVEELLSKNYHLENEVARLK  153 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccchHHHHHHHHHhh
Confidence            344555555555666666666654

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=80.97  E-value=25  Score=30.44  Aligned_cols=27  Identities=30%  Similarity=0.335  Sum_probs=21.9

Q ss_pred             hHHHHHHHHHHHhhhhhcHHHHHHHHH
Q 046111          319 SEKVAKAREEVNNLRHANDDLLKQVEG  345 (520)
Q Consensus       319 ~~~Va~a~eE~~~LR~~NEdL~kqVEq  345 (520)
                      +.||+.++.+-..+-.-|+.|..||..
T Consensus        68 N~MVa~ar~e~~~~e~kn~~L~~qL~d   94 (97)
T 2eqb_B           68 NNMVADARKEKYAIEILNKRLTEQLRE   94 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            679999988888888888888877753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00